Query 000924
Match_columns 1222
No_of_seqs 158 out of 229
Neff 3.0
Searched_HMMs 46136
Date Tue Apr 2 00:51:01 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1340 Uncharacterized archae 99.7 1.8E-15 4E-20 164.6 32.1 208 662-883 8-237 (294)
2 COG1340 Uncharacterized archae 99.0 9.9E-07 2.1E-11 97.4 31.2 198 663-874 23-249 (294)
3 PHA02562 46 endonuclease subun 98.4 0.00052 1.1E-08 79.6 31.3 78 801-878 327-404 (562)
4 TIGR02169 SMC_prok_A chromosom 98.3 0.0008 1.7E-08 83.3 33.4 34 664-697 678-711 (1164)
5 PRK03918 chromosome segregatio 98.3 0.0011 2.5E-08 80.8 33.4 30 664-693 456-485 (880)
6 TIGR02169 SMC_prok_A chromosom 98.3 0.00079 1.7E-08 83.4 31.4 32 663-694 684-715 (1164)
7 COG1196 Smc Chromosome segrega 98.2 0.0017 3.6E-08 83.0 33.1 54 664-717 671-724 (1163)
8 TIGR02168 SMC_prok_B chromosom 98.2 0.0028 6E-08 78.2 33.9 54 663-716 673-726 (1179)
9 TIGR02168 SMC_prok_B chromosom 98.2 0.0021 4.6E-08 79.1 32.9 67 662-728 679-745 (1179)
10 KOG0161 Myosin class II heavy 98.2 0.0018 3.8E-08 85.8 33.2 217 694-913 956-1198(1930)
11 COG1196 Smc Chromosome segrega 98.2 0.0032 6.9E-08 80.5 34.8 93 798-890 391-483 (1163)
12 PF07888 CALCOCO1: Calcium bin 98.2 0.0027 5.8E-08 75.9 31.6 188 665-863 141-328 (546)
13 PHA02562 46 endonuclease subun 98.1 0.0058 1.3E-07 71.2 33.3 25 666-690 173-197 (562)
14 PRK02224 chromosome segregatio 98.1 0.0063 1.4E-07 74.9 35.0 41 850-890 409-449 (880)
15 PRK11637 AmiB activator; Provi 98.1 0.0061 1.3E-07 70.1 31.3 67 663-729 43-109 (428)
16 PRK02224 chromosome segregatio 98.0 0.012 2.7E-07 72.4 34.7 41 827-867 648-688 (880)
17 PRK03918 chromosome segregatio 98.0 0.012 2.5E-07 72.3 34.3 22 662-683 461-482 (880)
18 TIGR00606 rad50 rad50. This fa 98.0 0.0033 7.1E-08 81.3 30.8 148 739-899 822-973 (1311)
19 PRK11637 AmiB activator; Provi 98.0 0.007 1.5E-07 69.6 28.9 73 661-733 48-120 (428)
20 PF00261 Tropomyosin: Tropomyo 97.9 0.0023 5E-08 68.6 22.8 91 797-887 134-224 (237)
21 KOG0964 Structural maintenance 97.9 0.012 2.6E-07 73.5 29.9 245 663-927 681-932 (1200)
22 COG1579 Zn-ribbon protein, pos 97.8 0.0055 1.2E-07 67.0 24.0 169 686-880 15-183 (239)
23 TIGR00606 rad50 rad50. This fa 97.8 0.023 4.9E-07 73.8 33.3 39 662-700 824-862 (1311)
24 KOG0964 Structural maintenance 97.8 0.0095 2.1E-07 74.4 27.5 171 740-923 357-542 (1200)
25 PTZ00121 MAEBL; Provisional 97.7 0.22 4.7E-06 65.0 36.9 24 757-780 1239-1262(2084)
26 KOG0996 Structural maintenance 97.6 0.04 8.7E-07 70.2 29.9 58 831-888 534-591 (1293)
27 PRK01156 chromosome segregatio 97.6 0.1 2.3E-06 64.9 33.6 29 664-692 473-501 (895)
28 TIGR03185 DNA_S_dndD DNA sulfu 97.6 0.2 4.3E-06 60.9 34.7 75 804-878 398-474 (650)
29 PRK01156 chromosome segregatio 97.6 0.033 7.2E-07 69.2 28.7 36 833-868 410-445 (895)
30 PRK04778 septation ring format 97.6 0.05 1.1E-06 65.2 29.1 82 809-890 353-434 (569)
31 TIGR03185 DNA_S_dndD DNA sulfu 97.5 0.082 1.8E-06 64.1 30.4 49 662-710 204-252 (650)
32 PF05667 DUF812: Protein of un 97.5 0.13 2.9E-06 62.6 31.3 24 747-770 409-432 (594)
33 KOG0250 DNA repair protein RAD 97.5 0.027 5.8E-07 71.4 26.2 80 798-877 395-474 (1074)
34 KOG0612 Rho-associated, coiled 97.5 0.15 3.3E-06 65.5 32.5 39 387-425 243-281 (1317)
35 KOG0161 Myosin class II heavy 97.5 0.12 2.6E-06 69.5 32.9 85 801-885 1052-1136(1930)
36 KOG0250 DNA repair protein RAD 97.5 0.26 5.7E-06 62.9 33.8 131 798-937 359-490 (1074)
37 KOG4674 Uncharacterized conser 97.4 0.2 4.4E-06 66.8 33.1 292 655-949 1155-1522(1822)
38 KOG1029 Endocytic adaptor prot 97.4 0.17 3.7E-06 62.7 29.4 29 740-768 445-473 (1118)
39 PF10174 Cast: RIM-binding pro 97.3 0.21 4.5E-06 62.6 30.9 236 684-926 325-591 (775)
40 KOG0996 Structural maintenance 97.3 0.21 4.5E-06 64.2 30.9 70 805-874 487-556 (1293)
41 KOG1029 Endocytic adaptor prot 97.3 0.05 1.1E-06 67.1 24.2 15 694-708 415-429 (1118)
42 KOG0979 Structural maintenance 97.3 0.072 1.6E-06 67.3 25.7 88 648-736 113-215 (1072)
43 PRK04778 septation ring format 97.3 0.66 1.4E-05 56.0 33.0 111 662-772 81-203 (569)
44 PF12128 DUF3584: Protein of u 97.3 0.3 6.6E-06 63.4 32.3 73 661-733 601-673 (1201)
45 PF00038 Filament: Intermediat 97.2 0.46 1E-05 52.2 34.1 56 663-718 50-105 (312)
46 PF00038 Filament: Intermediat 97.2 0.58 1.2E-05 51.4 28.7 31 664-694 58-88 (312)
47 COG4942 Membrane-bound metallo 97.1 0.59 1.3E-05 55.2 30.0 61 666-726 37-97 (420)
48 PTZ00121 MAEBL; Provisional 97.1 1.3 2.9E-05 58.3 34.2 8 505-512 946-953 (2084)
49 PF06160 EzrA: Septation ring 97.0 1 2.2E-05 54.5 31.6 112 662-773 77-200 (560)
50 PF12128 DUF3584: Protein of u 97.0 0.47 1E-05 61.8 30.5 50 834-883 471-520 (1201)
51 PRK04863 mukB cell division pr 97.0 0.49 1.1E-05 63.1 30.6 73 654-726 773-875 (1486)
52 COG0419 SbcC ATPase involved i 96.9 1.4 3.1E-05 55.8 32.9 42 740-782 601-642 (908)
53 KOG0933 Structural maintenance 96.9 0.67 1.5E-05 59.1 28.9 103 802-913 792-894 (1174)
54 TIGR02680 conserved hypothetic 96.9 0.65 1.4E-05 61.4 30.5 39 665-703 740-778 (1353)
55 COG1579 Zn-ribbon protein, pos 96.9 0.13 2.9E-06 56.6 20.6 17 826-842 118-134 (239)
56 COG4942 Membrane-bound metallo 96.9 1.6 3.5E-05 51.7 30.3 58 663-720 41-98 (420)
57 PF07888 CALCOCO1: Calcium bin 96.9 1.9 4.2E-05 52.5 32.8 66 667-732 150-215 (546)
58 KOG0933 Structural maintenance 96.8 0.58 1.3E-05 59.7 27.8 76 802-877 841-916 (1174)
59 PRK09039 hypothetical protein; 96.8 0.35 7.6E-06 55.3 24.2 54 665-718 44-97 (343)
60 KOG0971 Microtubule-associated 96.8 0.43 9.3E-06 60.2 26.2 70 833-903 476-546 (1243)
61 KOG4673 Transcription factor T 96.8 2.3 5.1E-05 52.8 41.9 205 695-938 402-624 (961)
62 PF09726 Macoilin: Transmembra 96.8 0.36 7.7E-06 60.0 25.9 140 686-834 430-575 (697)
63 KOG0977 Nuclear envelope prote 96.8 0.2 4.4E-06 60.5 23.1 26 693-718 160-185 (546)
64 KOG0977 Nuclear envelope prote 96.8 1.7 3.7E-05 53.0 30.4 19 892-910 263-281 (546)
65 PF05701 WEMBL: Weak chloropla 96.7 1.6 3.4E-05 52.5 29.7 76 798-873 303-378 (522)
66 COG5185 HEC1 Protein involved 96.7 1.4 3.1E-05 52.7 28.0 42 739-780 462-504 (622)
67 KOG4673 Transcription factor T 96.7 1.6 3.4E-05 54.2 29.0 37 660-696 402-438 (961)
68 COG4372 Uncharacterized protei 96.7 2.2 4.7E-05 50.3 31.9 206 681-906 102-311 (499)
69 KOG4674 Uncharacterized conser 96.6 2.5 5.5E-05 57.2 32.5 66 668-733 53-118 (1822)
70 PRK04863 mukB cell division pr 96.6 3.9 8.6E-05 55.0 34.6 152 739-890 435-619 (1486)
71 PF09728 Taxilin: Myosin-like 96.6 1.9 4.1E-05 49.0 32.3 72 812-883 203-274 (309)
72 PF06160 EzrA: Septation ring 96.6 1.2 2.6E-05 53.9 27.4 68 660-727 161-233 (560)
73 PF09789 DUF2353: Uncharacteri 96.5 2.2 4.8E-05 49.1 29.1 116 665-782 4-145 (319)
74 KOG0018 Structural maintenance 96.5 0.64 1.4E-05 59.6 25.5 89 799-887 404-492 (1141)
75 PF05667 DUF812: Protein of un 96.5 1.6 3.4E-05 53.7 28.3 39 743-784 423-461 (594)
76 PF05701 WEMBL: Weak chloropla 96.5 1.1 2.3E-05 53.9 26.3 216 662-883 174-409 (522)
77 PF00261 Tropomyosin: Tropomyo 96.4 1 2.3E-05 48.7 23.4 187 668-872 2-188 (237)
78 TIGR00634 recN DNA repair prot 96.4 1.1 2.4E-05 53.9 25.7 31 861-891 347-377 (563)
79 PF15070 GOLGA2L5: Putative go 96.4 2.7 5.8E-05 52.0 29.1 30 681-710 29-58 (617)
80 KOG0976 Rho/Rac1-interacting s 96.4 2.3 5E-05 53.5 28.1 17 804-820 291-307 (1265)
81 PRK09039 hypothetical protein; 96.4 0.56 1.2E-05 53.7 21.9 70 803-872 115-184 (343)
82 PF15070 GOLGA2L5: Putative go 96.3 4.4 9.5E-05 50.2 32.9 21 859-879 222-242 (617)
83 KOG0962 DNA repair protein RAD 96.3 1.6 3.4E-05 57.4 27.6 192 740-946 796-991 (1294)
84 PF08317 Spc7: Spc7 kinetochor 96.3 1.6 3.5E-05 49.4 24.9 15 695-709 115-129 (325)
85 KOG0995 Centromere-associated 96.3 4.4 9.4E-05 49.7 31.3 41 742-782 311-351 (581)
86 KOG0971 Microtubule-associated 96.3 5.8 0.00013 50.8 32.9 133 810-946 402-559 (1243)
87 KOG0979 Structural maintenance 96.1 5.2 0.00011 51.7 30.0 20 493-512 45-64 (1072)
88 PF08317 Spc7: Spc7 kinetochor 96.1 2 4.3E-05 48.7 24.4 60 810-869 208-267 (325)
89 TIGR01843 type_I_hlyD type I s 96.1 2 4.4E-05 48.1 24.3 22 662-683 76-97 (423)
90 KOG0612 Rho-associated, coiled 96.0 6.3 0.00014 51.8 30.5 16 903-918 762-777 (1317)
91 KOG0994 Extracellular matrix g 95.9 8.8 0.00019 50.4 30.5 63 673-735 1421-1483(1758)
92 KOG0946 ER-Golgi vesicle-tethe 95.9 0.63 1.4E-05 58.3 20.5 70 666-735 649-718 (970)
93 TIGR02680 conserved hypothetic 95.9 4.1 8.8E-05 54.3 29.2 37 662-698 744-780 (1353)
94 KOG0962 DNA repair protein RAD 95.8 11 0.00023 50.2 33.8 30 897-926 1062-1097(1294)
95 PF15619 Lebercilin: Ciliary p 95.8 3.5 7.7E-05 44.3 25.4 88 667-756 12-99 (194)
96 PF10168 Nup88: Nuclear pore c 95.7 0.89 1.9E-05 56.8 21.2 99 667-778 543-647 (717)
97 smart00787 Spc7 Spc7 kinetocho 95.6 2.5 5.4E-05 48.3 22.4 30 660-689 63-92 (312)
98 TIGR01000 bacteriocin_acc bact 95.6 2.8 6E-05 49.2 23.5 32 661-692 91-122 (457)
99 PF04912 Dynamitin: Dynamitin 95.6 2.9 6.4E-05 48.3 23.4 134 739-884 209-360 (388)
100 PF12718 Tropomyosin_1: Tropom 95.6 1.3 2.8E-05 45.3 18.2 43 690-732 2-44 (143)
101 PF10174 Cast: RIM-binding pro 95.5 11 0.00024 48.0 33.3 14 901-914 440-453 (775)
102 COG0419 SbcC ATPase involved i 95.4 12 0.00026 47.8 33.9 9 945-953 456-464 (908)
103 KOG0994 Extracellular matrix g 95.4 14 0.00031 48.6 31.2 61 662-726 1421-1481(1758)
104 smart00787 Spc7 Spc7 kinetocho 95.3 7.4 0.00016 44.6 25.8 47 663-709 73-124 (312)
105 TIGR03007 pepcterm_ChnLen poly 95.1 9.3 0.0002 45.0 25.6 10 771-780 255-264 (498)
106 COG5185 HEC1 Protein involved 94.8 13 0.00028 45.1 28.3 41 742-782 347-387 (622)
107 KOG4643 Uncharacterized coiled 94.8 19 0.00042 46.9 31.2 22 764-785 437-458 (1195)
108 KOG0976 Rho/Rac1-interacting s 94.8 17 0.00038 46.3 31.1 66 661-726 93-158 (1265)
109 PF10146 zf-C4H2: Zinc finger- 94.7 0.87 1.9E-05 50.0 15.1 84 790-873 18-101 (230)
110 PRK10869 recombination and rep 94.7 7.5 0.00016 47.3 24.3 30 861-890 342-371 (553)
111 PF13514 AAA_27: AAA domain 94.7 17 0.00038 47.5 28.7 11 108-118 112-122 (1111)
112 PF12252 SidE: Dot/Icm substra 94.6 4.1 8.9E-05 52.7 22.1 43 863-905 1301-1345(1439)
113 PF09726 Macoilin: Transmembra 94.6 6.4 0.00014 49.4 23.8 57 664-720 422-478 (697)
114 KOG0018 Structural maintenance 94.6 12 0.00025 49.0 25.9 69 815-883 406-474 (1141)
115 PF04849 HAP1_N: HAP1 N-termin 94.4 12 0.00026 43.1 28.1 136 740-887 161-303 (306)
116 PF09755 DUF2046: Uncharacteri 94.3 13 0.00028 43.0 24.8 42 663-711 23-64 (310)
117 TIGR01843 type_I_hlyD type I s 94.3 12 0.00025 42.2 24.0 20 662-681 83-102 (423)
118 PF05483 SCP-1: Synaptonemal c 94.0 23 0.00051 44.6 33.0 110 805-914 588-710 (786)
119 PF15450 DUF4631: Domain of un 93.9 21 0.00045 43.8 26.3 121 739-883 358-478 (531)
120 COG3883 Uncharacterized protei 93.9 14 0.00031 41.8 27.8 63 668-730 39-101 (265)
121 PF09789 DUF2353: Uncharacteri 93.7 12 0.00025 43.5 21.8 36 700-735 77-112 (319)
122 KOG0963 Transcription factor/C 93.7 8.8 0.00019 47.6 21.7 36 801-844 321-356 (629)
123 KOG0999 Microtubule-associated 93.5 25 0.00054 43.5 25.9 181 694-948 99-287 (772)
124 TIGR00634 recN DNA repair prot 93.5 14 0.00031 44.8 23.2 38 698-735 164-201 (563)
125 PLN03229 acetyl-coenzyme A car 93.4 26 0.00057 44.6 25.5 19 659-677 454-472 (762)
126 PF13166 AAA_13: AAA domain 93.4 25 0.00055 43.1 25.4 12 660-671 265-276 (712)
127 COG3883 Uncharacterized protei 93.4 18 0.00038 41.2 27.3 64 669-732 33-96 (265)
128 KOG0946 ER-Golgi vesicle-tethe 93.3 18 0.00039 46.3 23.9 25 482-506 455-479 (970)
129 PF11600 CAF-1_p150: Chromatin 93.3 0.71 1.5E-05 49.5 11.0 25 1090-1114 154-178 (216)
130 KOG4809 Rab6 GTPase-interactin 93.2 28 0.00061 43.0 25.5 15 901-915 439-453 (654)
131 PF12325 TMF_TATA_bd: TATA ele 93.1 2.6 5.7E-05 42.5 13.9 24 885-910 97-120 (120)
132 PF05622 HOOK: HOOK protein; 93.1 0.026 5.7E-07 69.1 0.0 60 809-868 361-420 (713)
133 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.0 9.8 0.00021 38.2 17.7 30 827-856 100-129 (132)
134 PF13166 AAA_13: AAA domain 93.0 29 0.00062 42.7 29.0 6 324-329 26-31 (712)
135 PF13851 GAS: Growth-arrest sp 93.0 15 0.00032 39.7 20.1 17 719-735 23-39 (201)
136 PRK10929 putative mechanosensi 93.0 11 0.00024 49.7 22.4 92 659-757 22-120 (1109)
137 KOG0239 Kinesin (KAR3 subfamil 92.9 2.7 5.8E-05 52.4 16.4 75 795-870 232-306 (670)
138 PF09730 BicD: Microtubule-ass 92.8 15 0.00034 46.4 22.6 44 834-877 414-457 (717)
139 TIGR01005 eps_transp_fam exopo 92.7 34 0.00074 42.7 26.6 62 654-716 158-222 (754)
140 KOG0980 Actin-binding protein 92.6 41 0.0009 43.6 28.8 50 685-734 348-397 (980)
141 KOG2072 Translation initiation 92.5 41 0.0009 43.4 38.8 86 827-926 672-758 (988)
142 PRK11281 hypothetical protein; 92.5 46 0.001 44.3 27.0 106 659-765 35-147 (1113)
143 TIGR01005 eps_transp_fam exopo 92.5 36 0.00078 42.5 27.8 32 702-733 237-268 (754)
144 TIGR01000 bacteriocin_acc bact 92.3 29 0.00062 41.0 26.0 25 662-686 99-123 (457)
145 KOG1850 Myosin-like coiled-coi 92.3 28 0.0006 40.8 26.2 117 766-895 207-331 (391)
146 KOG4593 Mitotic checkpoint pro 92.2 41 0.00089 42.6 29.8 20 763-782 190-209 (716)
147 PF04111 APG6: Autophagy prote 92.1 2.7 5.9E-05 47.8 14.1 34 833-866 100-133 (314)
148 PF10168 Nup88: Nuclear pore c 92.1 14 0.00031 46.6 21.3 85 672-756 563-649 (717)
149 PRK10869 recombination and rep 91.8 17 0.00037 44.4 20.9 40 894-933 342-381 (553)
150 TIGR03017 EpsF chain length de 91.7 25 0.00055 40.7 21.3 27 690-716 173-199 (444)
151 PF13851 GAS: Growth-arrest sp 91.7 22 0.00048 38.4 24.0 100 667-782 27-126 (201)
152 PF06008 Laminin_I: Laminin Do 91.6 25 0.00053 38.8 28.5 27 863-889 230-256 (264)
153 KOG0995 Centromere-associated 91.5 45 0.00097 41.5 32.4 48 681-728 339-386 (581)
154 PF04111 APG6: Autophagy prote 91.4 4 8.7E-05 46.5 14.4 115 806-944 45-159 (314)
155 PRK00247 putative inner membra 91.4 1.8 4E-05 51.4 12.1 24 1092-1115 366-389 (429)
156 PRK10884 SH3 domain-containing 91.3 3.5 7.6E-05 44.7 13.2 72 799-873 95-166 (206)
157 PF02403 Seryl_tRNA_N: Seryl-t 91.2 2.3 5E-05 40.6 10.5 27 801-827 33-59 (108)
158 PF05384 DegS: Sensor protein 91.1 19 0.0004 38.2 17.7 89 802-890 25-128 (159)
159 PF10186 Atg14: UV radiation r 91.1 16 0.00035 39.4 17.9 27 805-831 71-97 (302)
160 PF06818 Fez1: Fez1; InterPro 90.8 16 0.00035 40.1 17.5 161 703-889 11-174 (202)
161 PF09787 Golgin_A5: Golgin sub 90.8 46 0.001 40.4 25.7 34 664-697 106-139 (511)
162 PF15066 CAGE1: Cancer-associa 90.6 49 0.0011 40.4 24.1 89 767-871 433-521 (527)
163 KOG4364 Chromatin assembly fac 90.5 2.4 5.2E-05 52.5 12.1 16 935-950 133-148 (811)
164 PF03999 MAP65_ASE1: Microtubu 90.3 0.13 2.9E-06 62.4 1.7 75 800-874 224-300 (619)
165 KOG1003 Actin filament-coating 90.0 35 0.00075 37.7 23.0 79 803-881 108-186 (205)
166 PF10146 zf-C4H2: Zinc finger- 89.9 8.2 0.00018 42.7 14.6 75 799-873 17-94 (230)
167 cd08915 V_Alix_like Protein-in 89.7 42 0.0009 38.2 29.3 34 844-878 289-322 (342)
168 PF04156 IncA: IncA protein; 89.7 19 0.00041 37.3 16.4 64 803-866 87-150 (191)
169 KOG2751 Beclin-like protein [S 89.7 43 0.00094 40.5 20.8 94 739-869 176-269 (447)
170 KOG1937 Uncharacterized conser 89.6 58 0.0013 39.7 30.2 101 799-899 384-491 (521)
171 PLN03229 acetyl-coenzyme A car 89.6 42 0.00092 42.9 21.8 12 713-724 558-569 (762)
172 PF09730 BicD: Microtubule-ass 89.6 51 0.0011 42.1 22.5 46 691-736 23-68 (717)
173 KOG0804 Cytoplasmic Zn-finger 89.5 12 0.00026 45.1 16.3 109 800-920 350-458 (493)
174 PF14662 CCDC155: Coiled-coil 89.3 38 0.00082 37.2 25.5 38 809-846 100-137 (193)
175 KOG4302 Microtubule-associated 89.2 74 0.0016 40.4 25.7 34 841-874 228-261 (660)
176 PF07106 TBPIP: Tat binding pr 89.1 6.1 0.00013 40.7 12.2 27 802-828 77-103 (169)
177 PF13949 ALIX_LYPXL_bnd: ALIX 88.7 41 0.0009 36.9 32.0 19 766-784 147-165 (296)
178 KOG4302 Microtubule-associated 88.6 81 0.0018 40.1 28.4 37 699-735 100-136 (660)
179 PF07106 TBPIP: Tat binding pr 88.6 6.1 0.00013 40.7 11.8 19 760-778 69-87 (169)
180 PRK10929 putative mechanosensi 88.6 1E+02 0.0022 41.3 33.0 18 740-757 145-162 (1109)
181 PF13514 AAA_27: AAA domain 88.5 97 0.0021 40.9 34.7 35 917-951 971-1010(1111)
182 PF06008 Laminin_I: Laminin Do 88.4 44 0.00096 36.8 30.3 24 866-889 226-249 (264)
183 COG4477 EzrA Negative regulato 88.3 77 0.0017 39.4 26.3 66 809-874 352-417 (570)
184 KOG0999 Microtubule-associated 88.2 80 0.0017 39.5 30.2 179 666-854 7-192 (772)
185 PRK10361 DNA recombination pro 88.1 73 0.0016 39.0 24.1 12 937-948 233-244 (475)
186 PF06705 SF-assemblin: SF-asse 88.0 46 0.00099 36.5 26.4 18 740-757 93-110 (247)
187 COG3096 MukB Uncharacterized p 87.8 96 0.0021 40.0 33.5 89 642-730 758-878 (1480)
188 KOG0239 Kinesin (KAR3 subfamil 87.6 20 0.00043 45.1 17.4 47 805-851 228-274 (670)
189 PF12325 TMF_TATA_bd: TATA ele 87.5 15 0.00032 37.3 13.4 77 800-876 33-112 (120)
190 KOG1144 Translation initiation 87.5 1.6 3.5E-05 54.8 8.0 37 1074-1115 242-278 (1064)
191 PF06818 Fez1: Fez1; InterPro 87.2 52 0.0011 36.3 21.5 66 669-734 12-77 (202)
192 PF08614 ATG16: Autophagy prot 86.9 9.2 0.0002 40.5 12.2 54 803-856 115-168 (194)
193 PRK09510 tolA cell envelope in 86.9 5.5 0.00012 47.1 11.5 8 924-931 12-19 (387)
194 PF11932 DUF3450: Protein of u 86.5 43 0.00094 36.7 17.4 98 808-913 53-155 (251)
195 TIGR02894 DNA_bind_RsfA transc 86.2 13 0.00028 39.7 12.6 51 808-858 101-151 (161)
196 PF14915 CCDC144C: CCDC144C pr 86.2 74 0.0016 37.0 26.9 110 744-854 156-271 (305)
197 PF10498 IFT57: Intra-flagella 86.1 51 0.0011 38.8 18.6 54 804-857 266-319 (359)
198 PF10234 Cluap1: Clusterin-ass 86.0 46 0.001 38.0 17.6 84 801-884 166-249 (267)
199 PF03962 Mnd1: Mnd1 family; I 85.8 14 0.0003 39.6 12.9 66 813-879 64-129 (188)
200 COG4372 Uncharacterized protei 85.8 90 0.002 37.6 31.3 48 687-734 94-141 (499)
201 KOG1962 B-cell receptor-associ 85.6 9.5 0.00021 42.1 11.7 58 813-870 153-210 (216)
202 PRK00247 putative inner membra 85.4 7.5 0.00016 46.5 11.7 10 860-869 89-98 (429)
203 PF15619 Lebercilin: Ciliary p 85.4 60 0.0013 35.3 21.6 17 664-680 16-32 (194)
204 COG0497 RecN ATPase involved i 85.2 70 0.0015 39.9 19.9 40 740-779 179-221 (557)
205 PF04156 IncA: IncA protein; 85.0 40 0.00086 35.1 15.5 11 808-818 106-116 (191)
206 PF05010 TACC: Transforming ac 84.7 69 0.0015 35.3 24.2 33 715-749 68-100 (207)
207 PLN02939 transferase, transfer 84.4 1.6E+02 0.0034 39.2 31.5 53 661-713 129-181 (977)
208 PRK15422 septal ring assembly 84.2 5.3 0.00012 38.2 7.9 64 663-726 7-77 (79)
209 COG4026 Uncharacterized protei 84.2 11 0.00024 42.2 11.4 62 810-871 141-202 (290)
210 PF13800 Sigma_reg_N: Sigma fa 83.9 0.44 9.5E-06 45.0 0.8 31 1177-1208 2-32 (96)
211 PF10481 CENP-F_N: Cenp-F N-te 83.8 45 0.00097 38.5 16.1 64 807-870 63-126 (307)
212 PF07946 DUF1682: Protein of u 83.7 3.8 8.2E-05 46.6 8.2 12 1049-1060 259-270 (321)
213 KOG1962 B-cell receptor-associ 83.6 12 0.00027 41.3 11.6 80 766-855 130-209 (216)
214 COG4717 Uncharacterized conser 83.6 1.6E+02 0.0035 38.7 24.2 22 1091-1112 725-746 (984)
215 PF12795 MscS_porin: Mechanose 83.5 74 0.0016 34.8 22.0 34 739-772 78-111 (240)
216 KOG3054 Uncharacterized conser 83.3 4.7 0.0001 45.4 8.3 10 1175-1184 244-253 (299)
217 cd09234 V_HD-PTP_like Protein- 83.3 93 0.002 35.8 29.1 19 766-784 194-212 (337)
218 PF15290 Syntaphilin: Golgi-lo 83.3 15 0.00033 42.1 12.4 65 708-784 74-138 (305)
219 PTZ00266 NIMA-related protein 83.0 7.5 0.00016 50.7 11.2 9 1176-1184 679-687 (1021)
220 KOG0163 Myosin class VI heavy 82.9 6.8 0.00015 49.5 10.2 74 1042-1117 941-1015(1259)
221 PF06705 SF-assemblin: SF-asse 82.7 81 0.0017 34.7 25.1 25 896-920 196-220 (247)
222 KOG4438 Centromere-associated 82.7 1.2E+02 0.0027 36.8 27.1 29 688-716 173-201 (446)
223 KOG2129 Uncharacterized conser 82.6 1.3E+02 0.0027 36.8 22.8 41 662-709 45-85 (552)
224 KOG0288 WD40 repeat protein Ti 82.1 34 0.00074 41.2 15.0 71 802-872 32-109 (459)
225 PF01576 Myosin_tail_1: Myosin 82.0 0.43 9.4E-06 60.4 0.0 52 829-880 409-460 (859)
226 PF02403 Seryl_tRNA_N: Seryl-t 81.9 9.7 0.00021 36.4 9.0 63 665-727 34-99 (108)
227 PF05010 TACC: Transforming ac 81.9 88 0.0019 34.5 21.4 42 714-757 14-55 (207)
228 cd07651 F-BAR_PombeCdc15_like 81.8 83 0.0018 34.2 20.7 108 813-932 109-217 (236)
229 PF05622 HOOK: HOOK protein; 81.7 0.45 9.7E-06 58.7 0.0 40 664-703 243-282 (713)
230 PTZ00266 NIMA-related protein 81.6 8.8 0.00019 50.2 11.1 6 508-513 124-129 (1021)
231 PF09738 DUF2051: Double stran 81.4 18 0.00039 41.6 12.3 99 664-764 81-179 (302)
232 PF01576 Myosin_tail_1: Myosin 81.3 0.47 1E-05 60.0 0.0 49 801-849 261-309 (859)
233 COG4026 Uncharacterized protei 81.2 13 0.00027 41.7 10.5 76 678-755 132-207 (290)
234 cd09235 V_Alix Middle V-domain 81.0 1.1E+02 0.0025 35.2 27.1 19 766-784 194-212 (339)
235 PF09755 DUF2046: Uncharacteri 80.8 1.2E+02 0.0026 35.5 24.6 17 766-782 80-96 (310)
236 PRK10698 phage shock protein P 80.5 21 0.00044 39.1 11.9 19 740-758 167-185 (222)
237 PF15397 DUF4618: Domain of un 80.5 98 0.0021 35.3 17.3 134 766-913 23-158 (258)
238 PF11932 DUF3450: Protein of u 80.5 63 0.0014 35.5 15.6 70 795-864 47-116 (251)
239 PF08614 ATG16: Autophagy prot 80.2 35 0.00076 36.2 13.2 67 808-874 113-179 (194)
240 PF06005 DUF904: Protein of un 80.2 27 0.00059 32.7 10.8 61 663-723 7-67 (72)
241 KOG1144 Translation initiation 80.1 7.2 0.00016 49.5 9.1 6 1095-1100 285-290 (1064)
242 KOG0288 WD40 repeat protein Ti 80.0 68 0.0015 38.8 16.4 50 686-735 18-67 (459)
243 COG2433 Uncharacterized conser 79.3 70 0.0015 40.2 16.8 16 682-697 343-358 (652)
244 PRK05431 seryl-tRNA synthetase 79.3 15 0.00032 43.5 11.2 8 923-930 190-197 (425)
245 PF04949 Transcrip_act: Transc 78.5 45 0.00098 35.5 12.9 56 809-864 82-137 (159)
246 smart00502 BBC B-Box C-termina 78.4 60 0.0013 30.5 17.5 88 805-892 8-104 (127)
247 PF13870 DUF4201: Domain of un 78.3 91 0.002 32.6 20.2 56 816-871 82-137 (177)
248 PF12777 MT: Microtubule-bindi 78.3 1.4E+02 0.003 34.6 19.5 41 806-846 216-256 (344)
249 KOG4643 Uncharacterized coiled 78.1 2.5E+02 0.0055 37.5 29.7 114 660-778 257-372 (1195)
250 PF03904 DUF334: Domain of unk 78.1 71 0.0015 36.0 15.0 16 771-786 44-59 (230)
251 COG2433 Uncharacterized conser 78.0 26 0.00057 43.7 12.8 98 660-759 415-517 (652)
252 KOG0163 Myosin class VI heavy 77.7 2.3E+02 0.0051 36.9 23.3 65 713-779 865-930 (1259)
253 TIGR00414 serS seryl-tRNA synt 77.5 19 0.00041 42.6 11.3 6 771-776 31-36 (418)
254 PF10234 Cluap1: Clusterin-ass 76.9 69 0.0015 36.6 14.9 67 801-874 194-260 (267)
255 KOG4460 Nuclear pore complex, 76.7 96 0.0021 38.8 16.7 13 588-600 467-479 (741)
256 PF09766 FimP: Fms-interacting 76.5 41 0.00089 39.2 13.4 18 890-907 194-211 (355)
257 KOG3647 Predicted coiled-coil 76.4 1.3E+02 0.0029 34.8 16.7 14 768-781 55-68 (338)
258 PF04108 APG17: Autophagy prot 76.4 1.7E+02 0.0038 34.8 32.4 81 841-923 313-394 (412)
259 cd07627 BAR_Vps5p The Bin/Amph 76.3 1.2E+02 0.0026 32.8 23.5 127 767-913 81-210 (216)
260 KOG4451 Uncharacterized conser 76.2 79 0.0017 35.8 14.6 120 755-874 1-120 (286)
261 PLN03188 kinesin-12 family pro 75.7 3.2E+02 0.0069 37.5 24.9 37 834-870 1206-1242(1320)
262 KOG3647 Predicted coiled-coil 75.6 1.6E+02 0.0036 34.1 20.7 22 710-731 47-68 (338)
263 PF14197 Cep57_CLD_2: Centroso 75.4 39 0.00084 31.4 10.3 66 664-729 2-67 (69)
264 PRK03947 prefoldin subunit alp 75.4 94 0.002 31.2 14.0 34 831-864 100-133 (140)
265 PF10498 IFT57: Intra-flagella 75.4 48 0.001 39.0 13.6 129 638-771 194-339 (359)
266 PF03962 Mnd1: Mnd1 family; I 75.2 27 0.00059 37.4 10.8 72 646-719 50-127 (188)
267 PF15035 Rootletin: Ciliary ro 75.2 1.3E+02 0.0027 32.6 16.2 72 853-925 88-159 (182)
268 PF15290 Syntaphilin: Golgi-lo 75.1 27 0.00059 40.2 11.1 92 655-750 51-149 (305)
269 PF07946 DUF1682: Protein of u 75.1 11 0.00025 42.8 8.4 27 1038-1064 251-277 (321)
270 cd07623 BAR_SNX1_2 The Bin/Amp 74.8 1.3E+02 0.0029 32.7 20.7 164 742-916 15-193 (224)
271 PRK10698 phage shock protein P 74.7 1.4E+02 0.003 32.9 19.5 59 794-852 89-147 (222)
272 KOG1850 Myosin-like coiled-coi 74.7 1.9E+02 0.0041 34.4 28.3 59 813-871 210-268 (391)
273 KOG0804 Cytoplasmic Zn-finger 74.6 95 0.0021 38.0 15.8 14 533-546 133-146 (493)
274 KOG2412 Nuclear-export-signal 74.5 18 0.0004 44.5 10.2 27 1063-1089 204-230 (591)
275 cd00632 Prefoldin_beta Prefold 73.9 48 0.001 32.1 11.1 28 748-775 15-42 (105)
276 COG3096 MukB Uncharacterized p 73.8 2.9E+02 0.0063 36.1 25.3 43 674-716 836-878 (1480)
277 PF07200 Mod_r: Modifier of ru 73.7 1.1E+02 0.0023 31.0 17.8 20 905-927 125-144 (150)
278 TIGR02338 gimC_beta prefoldin, 73.7 54 0.0012 32.1 11.5 37 744-780 15-51 (110)
279 PF06005 DUF904: Protein of un 73.6 72 0.0016 30.0 11.7 30 839-868 39-68 (72)
280 PRK10884 SH3 domain-containing 73.5 59 0.0013 35.6 12.9 13 806-818 95-107 (206)
281 PF06785 UPF0242: Uncharacteri 73.5 2.1E+02 0.0045 34.3 18.6 22 713-734 89-110 (401)
282 KOG4809 Rab6 GTPase-interactin 73.4 2.6E+02 0.0056 35.3 25.1 90 762-858 323-413 (654)
283 TIGR02449 conserved hypothetic 73.3 26 0.00057 32.5 8.6 50 662-711 2-51 (65)
284 PF15254 CCDC14: Coiled-coil d 73.3 2.8E+02 0.006 36.2 19.8 29 685-713 384-412 (861)
285 COG3074 Uncharacterized protei 73.3 22 0.00048 33.7 8.2 60 663-722 7-73 (79)
286 PF09304 Cortex-I_coil: Cortex 73.2 1E+02 0.0022 31.4 13.2 19 801-819 13-31 (107)
287 TIGR01612 235kDa-fam reticuloc 73.2 4.7E+02 0.01 38.3 23.5 236 663-899 879-1172(2757)
288 cd07654 F-BAR_FCHSD The F-BAR 72.6 1.8E+02 0.0038 33.1 17.8 151 767-933 74-224 (264)
289 KOG0978 E3 ubiquitin ligase in 72.4 3E+02 0.0064 35.6 30.3 21 919-939 604-624 (698)
290 KOG4360 Uncharacterized coiled 72.4 1.3E+02 0.0029 37.4 16.3 146 707-866 157-302 (596)
291 KOG4438 Centromere-associated 72.1 2.4E+02 0.0053 34.5 28.5 41 740-780 280-323 (446)
292 PF12795 MscS_porin: Mechanose 71.9 1.6E+02 0.0034 32.3 21.4 22 686-707 43-64 (240)
293 PF05557 MAD: Mitotic checkpoi 71.9 1.2 2.7E-05 55.0 0.0 19 1191-1209 628-647 (722)
294 PF09304 Cortex-I_coil: Cortex 71.9 63 0.0014 32.8 11.5 55 664-718 13-74 (107)
295 PF09731 Mitofilin: Mitochondr 71.9 2.5E+02 0.0053 34.4 20.9 33 851-883 369-401 (582)
296 PF06009 Laminin_II: Laminin D 71.8 1.3 2.7E-05 44.7 0.0 89 804-892 17-108 (138)
297 PF05262 Borrelia_P83: Borreli 71.3 18 0.00039 44.0 9.3 68 858-949 77-151 (489)
298 KOG2412 Nuclear-export-signal 71.2 19 0.0004 44.4 9.3 9 664-672 28-36 (591)
299 KOG1003 Actin filament-coating 70.7 1.8E+02 0.0039 32.4 23.4 62 801-862 141-202 (205)
300 PRK03947 prefoldin subunit alp 70.5 1E+02 0.0022 31.0 12.9 32 840-871 95-126 (140)
301 PRK15422 septal ring assembly 70.3 45 0.00098 32.2 9.7 17 806-822 20-36 (79)
302 KOG2891 Surface glycoprotein [ 70.2 30 0.00065 39.9 10.0 27 1082-1109 381-407 (445)
303 PF05557 MAD: Mitotic checkpoi 69.8 4.1 8.8E-05 50.7 3.7 77 694-782 349-425 (722)
304 PF14662 CCDC155: Coiled-coil 69.8 1.8E+02 0.004 32.1 26.5 27 805-831 110-136 (193)
305 PF13870 DUF4201: Domain of un 69.7 1.5E+02 0.0032 31.0 20.4 29 896-924 141-169 (177)
306 KOG3091 Nuclear pore complex, 69.5 2.9E+02 0.0064 34.4 18.8 157 698-876 337-507 (508)
307 KOG0978 E3 ubiquitin ligase in 69.1 3.5E+02 0.0075 35.0 32.2 23 900-922 576-598 (698)
308 KOG2891 Surface glycoprotein [ 69.0 30 0.00065 39.9 9.7 75 1035-1112 342-424 (445)
309 cd07665 BAR_SNX1 The Bin/Amphi 68.9 2E+02 0.0044 32.3 20.1 166 743-921 26-206 (234)
310 TIGR01010 BexC_CtrB_KpsE polys 68.6 2.2E+02 0.0048 32.6 17.5 35 635-670 113-149 (362)
311 COG1842 PspA Phage shock prote 68.4 2E+02 0.0044 32.1 21.0 17 766-782 88-104 (225)
312 PLN02678 seryl-tRNA synthetase 68.3 26 0.00055 42.3 9.6 66 664-729 37-105 (448)
313 TIGR00414 serS seryl-tRNA synt 68.3 28 0.0006 41.3 9.8 65 664-728 34-102 (418)
314 cd07653 F-BAR_CIP4-like The F- 68.1 1.8E+02 0.004 31.5 21.0 191 743-940 2-215 (251)
315 TIGR03545 conserved hypothetic 68.0 1.2E+02 0.0027 37.7 15.3 53 809-864 217-269 (555)
316 PF12252 SidE: Dot/Icm substra 67.9 4.4E+02 0.0095 35.8 26.5 24 856-879 1318-1348(1439)
317 PF05384 DegS: Sensor protein 67.5 1.8E+02 0.0039 31.1 19.4 108 673-780 5-115 (159)
318 cd00179 SynN Syntaxin N-termin 67.5 1.4E+02 0.003 29.8 13.5 22 862-883 90-111 (151)
319 KOG4603 TBP-1 interacting prot 67.1 76 0.0017 34.7 11.7 57 798-867 117-173 (201)
320 PF04782 DUF632: Protein of un 67.1 2.6E+02 0.0055 32.7 19.0 154 763-937 92-256 (312)
321 KOG4603 TBP-1 interacting prot 67.0 2E+02 0.0044 31.6 14.8 24 808-831 90-113 (201)
322 cd07686 F-BAR_Fer The F-BAR (F 67.0 2.2E+02 0.0048 32.0 19.1 39 875-913 180-222 (234)
323 cd00176 SPEC Spectrin repeats, 66.9 1.4E+02 0.003 29.6 18.0 92 666-760 39-134 (213)
324 PF06103 DUF948: Bacterial pro 66.4 76 0.0016 29.7 10.4 58 810-867 25-82 (90)
325 PF06658 DUF1168: Protein of u 66.4 33 0.00071 36.0 8.7 25 1092-1116 79-103 (142)
326 PF03148 Tektin: Tektin family 66.4 2.8E+02 0.006 32.9 26.6 30 663-692 60-89 (384)
327 PF14812 PBP1_TM: Transmembran 66.1 0.47 1E-05 45.2 -4.0 15 1188-1202 65-79 (81)
328 cd09236 V_AnPalA_UmRIM20_like 66.0 2.6E+02 0.0057 32.5 26.4 33 845-878 301-333 (353)
329 PLN02678 seryl-tRNA synthetase 65.8 44 0.00094 40.4 10.8 13 769-781 32-44 (448)
330 PF15233 SYCE1: Synaptonemal c 65.6 1.8E+02 0.004 30.6 15.4 119 768-894 11-129 (134)
331 PF10473 CENP-F_leu_zip: Leuci 65.4 1.8E+02 0.004 30.5 20.5 16 765-780 2-17 (140)
332 PF12329 TMF_DNA_bd: TATA elem 65.3 98 0.0021 29.0 10.8 33 805-837 13-45 (74)
333 PRK11281 hypothetical protein; 65.3 4.9E+02 0.011 35.4 32.1 20 740-759 164-183 (1113)
334 TIGR01069 mutS2 MutS2 family p 65.2 1.3E+02 0.0029 38.6 15.4 30 678-707 519-548 (771)
335 cd09238 V_Alix_like_1 Protein- 64.5 2.8E+02 0.006 32.2 27.1 19 766-784 198-216 (339)
336 PF04912 Dynamitin: Dynamitin 64.3 2.9E+02 0.0062 32.5 16.8 17 664-680 206-222 (388)
337 PRK05431 seryl-tRNA synthetase 64.2 47 0.001 39.6 10.6 6 772-777 44-49 (425)
338 PF05529 Bap31: B-cell recepto 64.1 65 0.0014 33.9 10.6 38 839-876 154-191 (192)
339 KOG0963 Transcription factor/C 63.9 4.1E+02 0.0088 34.0 31.4 23 658-680 13-35 (629)
340 PF06810 Phage_GP20: Phage min 63.8 1.3E+02 0.0027 31.7 12.5 81 665-746 18-104 (155)
341 PF10481 CENP-F_N: Cenp-F N-te 63.7 2.9E+02 0.0064 32.3 17.6 15 770-784 74-88 (307)
342 PF08581 Tup_N: Tup N-terminal 63.6 45 0.00098 31.8 8.4 71 686-756 2-74 (79)
343 KOG2150 CCR4-NOT transcription 63.3 3E+02 0.0065 34.8 17.1 17 768-784 47-63 (575)
344 COG4499 Predicted membrane pro 63.3 4.4 9.5E-05 47.9 2.1 37 1178-1214 210-246 (434)
345 KOG2072 Translation initiation 63.2 4.8E+02 0.01 34.6 33.3 22 486-511 388-409 (988)
346 PRK09841 cryptic autophosphory 62.8 4.2E+02 0.0091 33.8 18.9 21 649-670 226-246 (726)
347 KOG2002 TPR-containing nuclear 62.8 17 0.00037 47.2 7.1 15 876-890 662-676 (1018)
348 PF03993 DUF349: Domain of Unk 62.4 67 0.0014 28.7 8.9 57 855-915 11-68 (77)
349 PRK12714 flgK flagellar hook-a 62.0 2.6E+02 0.0057 35.2 16.7 65 798-865 135-207 (624)
350 TIGR03017 EpsF chain length de 61.7 3.2E+02 0.0069 32.0 24.5 16 654-670 135-150 (444)
351 KOG4403 Cell surface glycoprot 61.5 2.7E+02 0.0059 34.3 15.8 22 459-480 21-42 (575)
352 PF14197 Cep57_CLD_2: Centroso 61.4 1E+02 0.0022 28.8 10.0 37 839-875 26-62 (69)
353 PRK08871 flgK flagellar hook-a 61.0 2.8E+02 0.006 35.1 16.7 68 795-865 135-209 (626)
354 PF05262 Borrelia_P83: Borreli 60.4 41 0.0009 41.1 9.4 22 890-911 116-137 (489)
355 PF07889 DUF1664: Protein of u 60.2 1.6E+02 0.0035 30.5 12.1 48 799-846 63-110 (126)
356 PF10211 Ax_dynein_light: Axon 60.2 2.1E+02 0.0046 30.9 13.7 36 800-835 123-158 (189)
357 PF03148 Tektin: Tektin family 60.2 3.5E+02 0.0076 32.0 24.8 48 830-877 322-369 (384)
358 PF12958 DUF3847: Protein of u 60.1 1.3E+02 0.0027 29.5 10.7 26 898-923 60-85 (86)
359 PF05911 DUF869: Plant protein 60.1 5.2E+02 0.011 33.9 26.4 64 808-871 124-187 (769)
360 PF05911 DUF869: Plant protein 60.0 5.2E+02 0.011 33.9 27.7 15 936-950 315-329 (769)
361 TIGR03319 YmdA_YtgF conserved 59.9 4.2E+02 0.0091 32.8 22.5 12 925-936 185-196 (514)
362 PRK10246 exonuclease subunit S 59.7 5.6E+02 0.012 34.2 36.4 7 584-590 501-507 (1047)
363 TIGR00020 prfB peptide chain r 59.7 1.1E+02 0.0023 36.4 12.3 60 723-782 7-68 (364)
364 PRK05683 flgK flagellar hook-a 59.3 2.4E+02 0.0051 36.0 15.9 67 796-865 133-209 (676)
365 PF03961 DUF342: Protein of un 59.1 70 0.0015 38.0 10.9 75 661-735 328-408 (451)
366 COG1256 FlgK Flagellar hook-as 58.7 1.7E+02 0.0037 36.5 14.2 49 800-851 141-189 (552)
367 PRK00578 prfB peptide chain re 58.7 1.4E+02 0.0029 35.7 12.9 60 723-782 7-68 (367)
368 PF08826 DMPK_coil: DMPK coile 58.3 1.3E+02 0.0029 27.7 10.0 50 681-730 11-60 (61)
369 COG3074 Uncharacterized protei 58.2 1E+02 0.0022 29.6 9.4 12 808-819 22-33 (79)
370 PRK11519 tyrosine kinase; Prov 58.1 5E+02 0.011 33.1 19.2 9 662-670 238-246 (719)
371 PF03999 MAP65_ASE1: Microtubu 58.1 3.3 7.2E-05 50.7 0.0 36 700-735 82-117 (619)
372 cd07655 F-BAR_PACSIN The F-BAR 58.0 3.1E+02 0.0067 30.6 19.7 106 817-934 125-237 (258)
373 KOG0810 SNARE protein Syntaxin 57.8 3.6E+02 0.0079 31.4 23.8 106 663-784 43-148 (297)
374 PRK11546 zraP zinc resistance 57.8 81 0.0018 33.2 9.8 17 855-871 91-107 (143)
375 PRK09841 cryptic autophosphory 57.8 4.9E+02 0.011 33.2 18.2 17 933-949 400-416 (726)
376 TIGR02231 conserved hypothetic 57.8 1.4E+02 0.003 36.2 13.1 28 840-867 139-166 (525)
377 TIGR02977 phageshock_pspA phag 57.3 2.9E+02 0.0063 30.1 19.3 47 798-844 93-139 (219)
378 PRK10636 putative ABC transpor 57.2 63 0.0014 40.1 10.5 66 808-873 560-632 (638)
379 TIGR03545 conserved hypothetic 57.1 92 0.002 38.7 11.7 38 826-863 220-257 (555)
380 TIGR02338 gimC_beta prefoldin, 57.0 2E+02 0.0044 28.2 13.5 9 769-777 9-17 (110)
381 cd09237 V_ScBro1_like Protein- 57.0 3.7E+02 0.008 31.3 26.2 19 766-784 204-222 (356)
382 PF05531 NPV_P10: Nucleopolyhe 56.6 45 0.00097 31.9 7.0 50 803-852 10-62 (75)
383 cd07656 F-BAR_srGAP The F-BAR 56.5 3.3E+02 0.0071 30.5 19.9 72 818-889 124-206 (241)
384 PF07889 DUF1664: Protein of u 56.5 85 0.0018 32.4 9.5 14 740-753 111-124 (126)
385 PLN02320 seryl-tRNA synthetase 56.4 51 0.0011 40.5 9.3 28 678-705 97-124 (502)
386 PF12329 TMF_DNA_bd: TATA elem 55.9 1.7E+02 0.0037 27.5 10.6 19 826-844 48-66 (74)
387 COG4487 Uncharacterized protei 55.8 4.8E+02 0.01 32.2 28.5 37 875-913 185-221 (438)
388 KOG4572 Predicted DNA-binding 55.7 6.4E+02 0.014 33.6 25.6 31 742-772 1128-1158(1424)
389 PF10368 YkyA: Putative cell-w 55.6 3.1E+02 0.0068 30.0 16.8 13 742-754 35-47 (204)
390 PF14712 Snapin_Pallidin: Snap 55.6 1.5E+02 0.0031 27.9 10.3 14 803-816 34-47 (92)
391 PF05529 Bap31: B-cell recepto 55.5 49 0.0011 34.8 8.0 23 809-831 159-181 (192)
392 PF04728 LPP: Lipoprotein leuc 55.4 92 0.002 28.5 8.4 37 826-862 11-47 (56)
393 PF14942 Muted: Organelle biog 55.4 2.7E+02 0.006 29.3 14.4 21 764-784 31-51 (145)
394 TIGR01069 mutS2 MutS2 family p 55.4 2.6E+02 0.0057 36.1 15.6 18 596-613 323-341 (771)
395 PF11559 ADIP: Afadin- and alp 55.4 2.4E+02 0.0053 28.7 16.6 57 796-852 51-107 (151)
396 PF06632 XRCC4: DNA double-str 55.1 1.1E+02 0.0023 36.2 11.2 58 678-735 148-206 (342)
397 PF04415 DUF515: Protein of un 55.1 11 0.00023 45.2 3.4 17 1148-1164 2-18 (416)
398 COG0497 RecN ATPase involved i 54.9 5.5E+02 0.012 32.6 25.0 34 857-890 339-372 (557)
399 PF05672 MAP7: MAP7 (E-MAP-115 54.5 1.4E+02 0.0029 32.5 11.0 24 1088-1111 111-134 (171)
400 PF06156 DUF972: Protein of un 54.4 56 0.0012 32.6 7.7 33 799-831 10-42 (107)
401 PF13863 DUF4200: Domain of un 54.0 2.2E+02 0.0048 27.8 13.1 94 662-757 13-106 (126)
402 PRK06945 flgK flagellar hook-a 54.0 4.1E+02 0.0089 33.8 16.6 49 798-849 136-184 (651)
403 KOG0240 Kinesin (SMY1 subfamil 53.8 5.8E+02 0.013 32.5 20.8 36 385-420 178-213 (607)
404 PF01920 Prefoldin_2: Prefoldi 53.4 2E+02 0.0042 27.0 12.8 10 769-778 4-13 (106)
405 TIGR02492 flgK_ends flagellar 53.2 2.6E+02 0.0056 32.1 13.7 65 800-874 137-205 (322)
406 cd07648 F-BAR_FCHO The F-BAR ( 53.1 3.5E+02 0.0076 29.8 19.6 32 902-933 180-211 (261)
407 KOG2391 Vacuolar sorting prote 53.1 2.8E+02 0.006 33.2 13.9 112 664-782 222-348 (365)
408 PF04420 CHD5: CHD5-like prote 53.0 46 0.00099 34.8 7.2 24 759-782 36-59 (161)
409 TIGR01541 tape_meas_lam_C phag 52.8 4.5E+02 0.0097 31.0 17.0 70 844-927 81-153 (332)
410 cd00890 Prefoldin Prefoldin is 52.6 56 0.0012 31.6 7.3 36 807-842 90-125 (129)
411 PRK12715 flgK flagellar hook-a 52.5 1.8E+02 0.0038 37.0 13.2 65 798-865 135-205 (649)
412 PRK09343 prefoldin subunit bet 52.4 2.6E+02 0.0057 28.2 13.5 13 770-782 11-23 (121)
413 PF10392 COG5: Golgi transport 52.4 2.7E+02 0.0058 28.2 13.2 56 827-882 67-122 (132)
414 KOG2391 Vacuolar sorting prote 52.3 2.4E+02 0.0053 33.7 13.3 47 767-819 229-275 (365)
415 PRK06665 flgK flagellar hook-a 52.3 2.3E+02 0.0051 35.6 14.2 22 892-913 279-300 (627)
416 PRK07521 flgK flagellar hook-a 52.3 2.2E+02 0.0048 34.5 13.6 46 800-848 132-177 (483)
417 COG1842 PspA Phage shock prote 52.2 3.8E+02 0.0083 30.0 21.2 55 795-849 90-144 (225)
418 PF04949 Transcrip_act: Transc 52.2 3.4E+02 0.0073 29.3 15.9 46 829-874 81-126 (159)
419 PF05483 SCP-1: Synaptonemal c 52.1 6.6E+02 0.014 32.7 32.5 97 763-859 464-561 (786)
420 PRK01844 hypothetical protein; 51.9 12 0.00027 35.3 2.6 22 1188-1209 2-23 (72)
421 PRK00409 recombination and DNA 51.7 2.4E+02 0.0051 36.5 14.3 8 572-579 462-469 (782)
422 PLN03188 kinesin-12 family pro 51.6 8.5E+02 0.018 33.8 29.7 75 841-920 1157-1232(1320)
423 TIGR03752 conj_TIGR03752 integ 51.4 1.7E+02 0.0036 36.1 12.3 47 806-859 61-107 (472)
424 KOG2357 Uncharacterized conser 51.0 58 0.0012 39.3 8.3 24 1049-1072 367-392 (440)
425 PRK07739 flgK flagellar hook-a 50.9 2.9E+02 0.0062 33.8 14.3 45 801-848 150-194 (507)
426 KOG4055 Uncharacterized conser 50.8 95 0.0021 34.2 9.2 7 1031-1037 82-88 (213)
427 KOG1103 Predicted coiled-coil 50.8 5.3E+02 0.011 31.2 18.0 196 740-948 87-297 (561)
428 PF09738 DUF2051: Double stran 50.6 3.4E+02 0.0075 31.7 14.1 7 940-946 174-180 (302)
429 TIGR03794 NHPM_micro_HlyD NHPM 50.6 4.8E+02 0.01 30.7 20.4 27 661-687 90-116 (421)
430 PF07798 DUF1640: Protein of u 50.6 3.1E+02 0.0068 29.0 12.9 18 740-757 121-138 (177)
431 PF05278 PEARLI-4: Arabidopsis 50.4 4E+02 0.0087 30.9 14.4 61 798-865 194-254 (269)
432 KOG0980 Actin-binding protein 50.0 7.8E+02 0.017 32.9 29.0 10 1187-1196 831-840 (980)
433 PHA01750 hypothetical protein 49.9 63 0.0014 30.6 6.7 8 811-818 42-49 (75)
434 KOG2273 Membrane coat complex 49.9 5.4E+02 0.012 31.1 25.1 13 631-643 254-266 (503)
435 cd00179 SynN Syntaxin N-termin 49.8 2.7E+02 0.006 27.6 13.4 26 902-927 90-115 (151)
436 PF03961 DUF342: Protein of un 49.6 85 0.0018 37.3 9.6 13 766-778 330-342 (451)
437 PF01496 V_ATPase_I: V-type AT 49.3 47 0.001 41.9 7.8 17 757-773 147-163 (759)
438 PF06810 Phage_GP20: Phage min 49.3 1.4E+02 0.003 31.4 10.0 11 937-948 114-124 (155)
439 smart00503 SynN Syntaxin N-ter 49.2 2.4E+02 0.0052 26.7 13.9 12 866-877 95-106 (117)
440 PF15450 DUF4631: Domain of un 49.2 6.5E+02 0.014 31.8 27.7 52 800-851 379-431 (531)
441 PF05266 DUF724: Protein of un 49.1 3.9E+02 0.0084 29.2 16.5 48 828-875 127-174 (190)
442 PRK12704 phosphodiesterase; Pr 49.1 6.2E+02 0.013 31.5 21.7 14 923-936 189-202 (520)
443 PF09403 FadA: Adhesion protei 49.1 3.3E+02 0.0071 28.3 14.5 8 859-866 119-126 (126)
444 PF10140 YukC: WXG100 protein 49.0 5.7 0.00012 46.4 0.0 28 1186-1213 192-219 (359)
445 KOG2002 TPR-containing nuclear 48.8 1.2E+02 0.0026 40.1 11.1 41 1074-1116 858-898 (1018)
446 PF08581 Tup_N: Tup N-terminal 48.8 2.6E+02 0.0055 27.0 11.7 10 860-869 64-73 (79)
447 KOG2264 Exostosin EXT1L [Signa 48.7 1.3E+02 0.0028 37.9 10.8 55 676-730 81-135 (907)
448 PF11559 ADIP: Afadin- and alp 48.7 3.1E+02 0.0067 27.9 14.9 12 767-778 35-46 (151)
449 cd00632 Prefoldin_beta Prefold 48.7 2.6E+02 0.0057 27.1 12.3 10 769-778 5-14 (105)
450 COG4477 EzrA Negative regulato 48.6 6.7E+02 0.015 31.8 29.1 86 685-770 108-200 (570)
451 PF03879 Cgr1: Cgr1 family; I 48.6 2.2E+02 0.0047 29.0 10.7 51 1061-1117 52-102 (108)
452 PF05278 PEARLI-4: Arabidopsis 48.4 5E+02 0.011 30.2 20.4 12 699-710 126-137 (269)
453 PF06156 DUF972: Protein of un 48.1 1.8E+02 0.0038 29.3 10.0 49 819-867 9-57 (107)
454 KOG3433 Protein involved in me 48.1 2.9E+02 0.0063 30.7 12.2 43 829-871 120-162 (203)
455 PF07426 Dynactin_p22: Dynacti 47.8 3.9E+02 0.0085 28.8 17.0 133 740-876 6-156 (174)
456 PRK00409 recombination and DNA 47.7 5.3E+02 0.011 33.5 16.5 15 595-609 327-341 (782)
457 smart00502 BBC B-Box C-termina 47.5 2.5E+02 0.0053 26.4 15.7 36 739-774 86-123 (127)
458 PRK11519 tyrosine kinase; Prov 47.4 4.9E+02 0.011 33.1 16.0 12 937-948 404-415 (719)
459 PRK07191 flgK flagellar hook-a 46.9 2.8E+02 0.006 33.4 13.2 46 800-848 137-182 (456)
460 KOG0243 Kinesin-like protein [ 46.8 9.2E+02 0.02 32.8 30.9 57 662-718 450-513 (1041)
461 PF12777 MT: Microtubule-bindi 46.8 5.2E+02 0.011 30.0 15.8 32 871-902 79-113 (344)
462 PF12711 Kinesin-relat_1: Kine 46.6 1.3E+02 0.0028 29.5 8.5 35 745-779 2-40 (86)
463 KOG2150 CCR4-NOT transcription 46.2 4E+02 0.0088 33.7 14.5 45 899-943 153-208 (575)
464 PRK08147 flgK flagellar hook-a 46.1 3E+02 0.0065 33.8 13.5 22 892-913 277-298 (547)
465 PF07851 TMPIT: TMPIT-like pro 46.0 1.5E+02 0.0032 35.0 10.5 70 684-754 7-76 (330)
466 PHA01750 hypothetical protein 46.0 1E+02 0.0022 29.3 7.4 32 803-834 41-72 (75)
467 PLN02316 synthase/transferase 45.7 45 0.00097 44.1 7.0 29 1075-1104 270-298 (1036)
468 PRK05529 cell division protein 45.6 18 0.00039 40.1 3.1 19 1188-1206 35-53 (255)
469 PRK06799 flgK flagellar hook-a 45.5 3.9E+02 0.0085 32.1 14.1 45 801-848 143-187 (431)
470 PF06717 DUF1202: Protein of u 45.5 5.8E+02 0.013 30.1 16.7 46 661-706 132-177 (308)
471 PF02050 FliJ: Flagellar FliJ 45.4 2.5E+02 0.0054 25.9 14.0 108 791-898 6-118 (123)
472 PF06658 DUF1168: Protein of u 45.3 1.7E+02 0.0038 30.8 9.9 6 1031-1036 38-43 (142)
473 COG0172 SerS Seryl-tRNA synthe 45.1 73 0.0016 38.6 8.1 72 664-735 33-108 (429)
474 PF14257 DUF4349: Domain of un 44.9 22 0.00047 39.0 3.6 40 721-762 160-199 (262)
475 COG1382 GimC Prefoldin, chaper 44.9 3.3E+02 0.0072 28.2 11.5 88 770-860 10-112 (119)
476 KOG4196 bZIP transcription fac 44.6 1.6E+02 0.0034 31.0 9.2 79 739-836 32-113 (135)
477 PF09787 Golgin_A5: Golgin sub 44.3 6.9E+02 0.015 30.7 26.2 25 662-686 111-135 (511)
478 KOG1103 Predicted coiled-coil 44.1 6.6E+02 0.014 30.4 19.6 73 843-923 256-329 (561)
479 PF09325 Vps5: Vps5 C terminal 43.9 4.2E+02 0.0092 28.1 25.0 32 793-824 124-155 (236)
480 TIGR01495 ETRAMP Plasmodium ri 43.6 23 0.00049 34.2 3.1 40 1172-1211 36-76 (85)
481 KOG1853 LIS1-interacting prote 43.5 5.9E+02 0.013 29.7 17.5 126 662-821 54-181 (333)
482 PF07851 TMPIT: TMPIT-like pro 43.4 2.6E+02 0.0057 33.1 11.9 78 801-878 1-86 (330)
483 PF05615 THOC7: Tho complex su 43.3 2.6E+02 0.0056 28.2 10.6 76 767-843 50-126 (139)
484 PF08647 BRE1: BRE1 E3 ubiquit 43.2 3.2E+02 0.007 26.5 12.0 81 809-889 1-81 (96)
485 TIGR03752 conj_TIGR03752 integ 43.2 2.4E+02 0.0052 34.9 11.9 81 803-883 58-139 (472)
486 KOG2963 RNA-binding protein re 43.1 76 0.0017 37.8 7.6 64 1068-1133 318-383 (405)
487 PF13747 DUF4164: Domain of un 43.1 3.1E+02 0.0068 26.6 10.5 69 665-733 13-84 (89)
488 PF09731 Mitofilin: Mitochondr 43.1 7.2E+02 0.016 30.6 24.2 178 663-867 254-441 (582)
489 PF13949 ALIX_LYPXL_bnd: ALIX 42.8 5E+02 0.011 28.7 28.2 245 663-919 9-288 (296)
490 PF14817 HAUS5: HAUS augmin-li 42.6 4.5E+02 0.0097 33.6 14.5 95 793-887 75-169 (632)
491 COG0172 SerS Seryl-tRNA synthe 42.1 1.7E+02 0.0036 35.7 10.4 102 772-876 4-105 (429)
492 PTZ00464 SNF-7-like protein; P 42.1 5.3E+02 0.011 28.7 13.6 94 663-756 21-138 (211)
493 smart00030 CLb CLUSTERIN Beta 41.9 2.4E+02 0.0053 31.5 10.7 90 837-942 20-109 (206)
494 TIGR01554 major_cap_HK97 phage 41.8 1.3E+02 0.0028 34.7 9.3 68 806-873 1-68 (378)
495 cd07657 F-BAR_Fes_Fer The F-BA 41.6 5.4E+02 0.012 28.7 21.1 145 766-913 68-221 (237)
496 PF03194 LUC7: LUC7 N_terminus 41.5 5.5E+02 0.012 29.1 13.7 153 741-894 92-253 (254)
497 KOG0244 Kinesin-like protein [ 41.4 1E+03 0.022 31.9 19.5 266 664-935 334-644 (913)
498 PLN03086 PRLI-interacting fact 40.7 1.3E+02 0.0029 37.7 9.5 62 1045-1107 4-65 (567)
499 PF14362 DUF4407: Domain of un 40.6 5.8E+02 0.013 28.7 15.0 122 778-901 111-248 (301)
500 KOG2264 Exostosin EXT1L [Signa 40.5 1.8E+02 0.0039 36.8 10.3 68 801-868 80-150 (907)
No 1
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=99.75 E-value=1.8e-15 Score=164.56 Aligned_cols=208 Identities=17% Similarity=0.307 Sum_probs=145.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----
Q 000924 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK----- 736 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLR----- 736 (1222)
...+..++..+...+..+++.|+.++.+++.++++|++|+.++++++++.++++..+++.++++..++...+.++
T Consensus 8 ~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 8 LDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777888899999999999999999999999999999999888887777776666666655544322110
Q ss_pred -----------------cCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHH
Q 000924 737 -----------------NAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQK 799 (1222)
Q Consensus 737 -----------------nAkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQK 799 (1222)
...++..|.+.|.+|||.+||.+||+.+|+++|++|++|++...... ..
T Consensus 88 L~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~--------------k~ 153 (294)
T COG1340 88 LRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAK--------------KA 153 (294)
T ss_pred HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH--------------HH
Confidence 13699999999999999999999999999999999999998865441 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000924 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY 879 (1222)
Q Consensus 800 EaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqn 879 (1222)
...+.+++.|.+++++++.+...++.++.+|..+.++++.+|..+..+.+.++...|++-+.+-.+++..++.+..|-+.
T Consensus 154 ~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~ 233 (294)
T COG1340 154 LEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNL 233 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 23455666777777777776666666555555555555555555555555555555555555444444444444444444
Q ss_pred HHHH
Q 000924 880 KDDT 883 (1222)
Q Consensus 880 Rr~i 883 (1222)
+..+
T Consensus 234 ~~el 237 (294)
T COG1340 234 QNEL 237 (294)
T ss_pred HHHH
Confidence 3333
No 2
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.97 E-value=9.9e-07 Score=97.45 Aligned_cols=198 Identities=16% Similarity=0.237 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000924 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQT-------IRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN-- 733 (1222)
Q Consensus 663 EeLKAKIdeLqKEIeKLnq~RdaI~eELka-------lRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLn-- 733 (1222)
..+..+.+.+.+++..+...|++++.+.+. ++.+|+++++++..+++++...+..++..+++++.+...++
T Consensus 23 ~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~ 102 (294)
T COG1340 23 EELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEF 102 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345566667777777777777777666543 46677777777777777777777666666666666555433
Q ss_pred --hhcc------------------CCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHH
Q 000924 734 --MMKN------------------AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQ 793 (1222)
Q Consensus 734 --KLRn------------------AkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQ 793 (1222)
..+. -.|+++=+..|..+.. |..+....+.+........ +.++++.
T Consensus 103 ~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~--------L~k~le~~~k~~e~~~~~~------el~aei~ 168 (294)
T COG1340 103 NLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKE--------LRKELEDAKKALEENEKLK------ELKAEID 168 (294)
T ss_pred hccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 1111 1243333333333322 4444444444444443322 2245555
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 794 LAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN 873 (1222)
Q Consensus 794 ESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkN 873 (1222)
+.......++++|..|..+++++..++..+..+++++.++.+.++.++.++....+.+++....++++|..|.+....+.
T Consensus 169 ~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 169 ELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666678888999999999999999999999999999999999999999999999999998888888888888766554
Q ss_pred H
Q 000924 874 Q 874 (1222)
Q Consensus 874 k 874 (1222)
.
T Consensus 249 ~ 249 (294)
T COG1340 249 A 249 (294)
T ss_pred H
Confidence 4
No 3
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.37 E-value=0.00052 Score=79.60 Aligned_cols=78 Identities=9% Similarity=0.118 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (1222)
Q Consensus 801 aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYq 878 (1222)
....++..+..++.+++..+...+..+..+..+...++.+|.+|......+.....++..+|.+++.++.+..+..+.
T Consensus 327 ~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 327 EIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555666666666665566666666666667777777776666677777777777777777776665544
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.33 E-value=0.0008 Score=83.29 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHH
Q 000924 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY 697 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalRaER 697 (1222)
.+..++..+..++..+......+..++..++.+.
T Consensus 678 ~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~ 711 (1164)
T TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQEL 711 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444444444443333
No 5
>PRK03918 chromosome segregation protein; Provisional
Probab=98.30 E-value=0.0011 Score=80.84 Aligned_cols=30 Identities=10% Similarity=0.353 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHH
Q 000924 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTI 693 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLnq~RdaI~eELkal 693 (1222)
.+..+|..++.++..++..+..+..++..+
T Consensus 456 ~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~ 485 (880)
T PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELREL 485 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665555555554433
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.27 E-value=0.00079 Score=83.36 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHH
Q 000924 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR 694 (1222)
Q Consensus 663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalR 694 (1222)
..+..++..++.++..+......+..++..++
T Consensus 684 ~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~ 715 (1164)
T TIGR02169 684 EGLKRELSSLQSELRRIENRLDELSQELSDAS 715 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444444444444444443333
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.20 E-value=0.0017 Score=83.02 Aligned_cols=54 Identities=9% Similarity=0.292 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARES 717 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlRee 717 (1222)
.+..+|..+...+..+......+..++..+...+.++..++..++-++..++..
T Consensus 671 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1163)
T COG1196 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE 724 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444444444444444444444444444444443333333
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.20 E-value=0.0028 Score=78.20 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (1222)
Q Consensus 663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlRe 716 (1222)
..+..+++.++.++..+......+..++..+..+...+..++..+..++..+..
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 726 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666655555555555555555555555444444444333333
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.20 E-value=0.0021 Score=79.14 Aligned_cols=67 Identities=18% Similarity=0.348 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSV 728 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~L 728 (1222)
...++..++.++.++..+......+..++..++.+...+..++..+...+..++..+.....++..+
T Consensus 679 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 745 (1179)
T TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666555555555555555555554444444444444444433333333333
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.18 E-value=0.0018 Score=85.82 Aligned_cols=217 Identities=17% Similarity=0.259 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----CCHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q 000924 694 RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNA-----ISVDDIDGSIRNMEHRIAHETLPLKEEKQI 768 (1222)
Q Consensus 694 RaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnA-----kSVEEIDarIa~LE~RIQTgSLSLvEEKKL 768 (1222)
..+...+..+++.|..++..+++.+....++-+.+.+.++.+... .-...+.+.+..||-.|.---..|..|+++
T Consensus 956 ~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~ 1035 (1930)
T KOG0161|consen 956 ELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRI 1035 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333333333332110 134456667788888888888899999999
Q ss_pred HHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 769 IREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQF 848 (1222)
Q Consensus 769 LKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeEl 848 (1222)
..+....++..+ ......+..+.....+++.+..+++....++..+..++......+..+.+.+.++...|.+|.+++
T Consensus 1036 r~e~Ek~~rkle--~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1036 RMELEKAKRKLE--GELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred HHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998884433322 222233444444455666677777777777777777777766666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHH--------------HHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000924 849 KAADEIRQEAYKHWQS-------LKKQAYDK--------------NQHFWKYKDDTKQANDLASKGDREALQHLCVNQVE 907 (1222)
Q Consensus 849 kAL~EKRDEAYeeIke-------LRKERDEk--------------NkeFYqnRr~i~KARELAakgdveELeelC~aEVE 907 (1222)
.+-...|.++=..+.. |+.+.++. ...|+..|+.+..+. +.....+.+|+..|...+.
T Consensus 1114 e~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~-~~~e~~~~~lr~~~~~~~~ 1192 (1930)
T KOG0161|consen 1114 EAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEET-LDHEAQIEELRKKHADSLA 1192 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence 6555555555444444 44433332 124444454444332 2234555666666666666
Q ss_pred HHHHHH
Q 000924 908 RVLELW 913 (1222)
Q Consensus 908 kFMelW 913 (1222)
..-+..
T Consensus 1193 el~~ql 1198 (1930)
T KOG0161|consen 1193 ELQEQL 1198 (1930)
T ss_pred HHHHHH
Confidence 655554
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.18 E-value=0.0032 Score=80.54 Aligned_cols=93 Identities=14% Similarity=0.251 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (1222)
Q Consensus 798 QKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFY 877 (1222)
+...++.++..++.+++.+...++.+...+..+..++.++..++..++.++..+......+-+.+..++..+.++...|-
T Consensus 391 ~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 470 (1163)
T COG1196 391 ELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA 470 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777777777777777777777777777777777777777777777777888888888888888777
Q ss_pred HhHHHHHHHHHHH
Q 000924 878 KYKDDTKQANDLA 890 (1222)
Q Consensus 878 qnRr~i~KARELA 890 (1222)
.++..+..++...
T Consensus 471 ~~~~~~~~~~~~l 483 (1163)
T COG1196 471 ELQEELQRLEKEL 483 (1163)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666653
No 12
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.17 E-value=0.0027 Score=75.85 Aligned_cols=188 Identities=17% Similarity=0.286 Sum_probs=91.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHH
Q 000924 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDI 744 (1222)
Q Consensus 665 LKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEI 744 (1222)
+..+++..+++..+|.+....|..+...++.+-..|...|...+.+...+.....+.....+.+......|. ...++.
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~--~q~~e~ 218 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLK--EQLAEA 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 556666666666666666666666665555555555555555555544444444333333333333333332 134455
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 745 DGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAE 824 (1222)
Q Consensus 745 DarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLe 824 (1222)
..+|..||..|.+-+-...+--+++.+++.++..+++... ..+..++....+......+...+..+++.++.+|..++
T Consensus 219 ~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~--eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~q 296 (546)
T PF07888_consen 219 RQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEA--ELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQ 296 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6677777777765554455666666666666555544321 11122333333322222222333444444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 825 AATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQ 863 (1222)
Q Consensus 825 aElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIk 863 (1222)
.. +...+.+..-|.+++.++...||.....+.
T Consensus 297 e~-------lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh 328 (546)
T PF07888_consen 297 EQ-------LQASQQEAELLRKELSDAVNVRDRTMAELH 328 (546)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 333334444455555555555555544443
No 13
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.14 E-value=0.0058 Score=71.17 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=10.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhH
Q 000924 666 REQIKAAQSKVDEKTRSRDAIRDDI 690 (1222)
Q Consensus 666 KAKIdeLqKEIeKLnq~RdaI~eEL 690 (1222)
+.++..+++++..+......+..++
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i 197 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQI 197 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333333
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=98.14 E-value=0.0063 Score=74.92 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000924 850 AADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLA 890 (1222)
Q Consensus 850 AL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELA 890 (1222)
.+....+.+-.++..|+..........-.++..+..++.+.
T Consensus 409 ~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l 449 (880)
T PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEALL 449 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566666665565555555666666666533
No 15
>PRK11637 AmiB activator; Provisional
Probab=98.07 E-value=0.0061 Score=70.07 Aligned_cols=67 Identities=21% Similarity=0.325 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQ 729 (1222)
Q Consensus 663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQ 729 (1222)
..++.+|++++++|+++.+....+..+++....+...+..+|..+..++......+...-.+|..++
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~ 109 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELN 109 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777666666555555555555444444444444444444444444433333333333
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=98.03 E-value=0.012 Score=72.44 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 827 TQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKK 867 (1222)
Q Consensus 827 lKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRK 867 (1222)
++.+..+++.+...+..+..++..+...+..+...+..|..
T Consensus 648 ~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~ 688 (880)
T PRK02224 648 IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVEN 688 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555554444444443
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=98.03 E-value=0.012 Score=72.30 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHH
Q 000924 662 DENLREQIKAAQSKVDEKTRSR 683 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq~R 683 (1222)
...+..+|..++.++..++...
T Consensus 461 i~~l~~~~~~l~~~~~~l~~~~ 482 (880)
T PRK03918 461 LKRIEKELKEIEEKERKLRKEL 482 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444433
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.02 E-value=0.0033 Score=81.30 Aligned_cols=148 Identities=14% Similarity=0.182 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCC----hHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHH
Q 000924 739 ISVDDIDGSIRNMEHRIAHETLP----LKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEAD 814 (1222)
Q Consensus 739 kSVEEIDarIa~LE~RIQTgSLS----LvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEID 814 (1222)
.|+++|...|..++..+..-.-. ..+-.++-++|++|+.....+ -..+.++...+..+..+..+|..|..++.
T Consensus 822 ~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el---~~~klkl~~~l~~r~~le~~L~el~~el~ 898 (1311)
T TIGR00606 822 RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNEL---KSEKLQIGTNLQRRQQFEEQLVELSTEVQ 898 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666655543211 122223334444444332222 12233333333334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC
Q 000924 815 SLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGD 894 (1222)
Q Consensus 815 ELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgd 894 (1222)
.++.. ++.+..++..+...+..++.++..+...++..+. +++.+.+..+..+-+........++|...|-
T Consensus 899 ~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~ 968 (1311)
T TIGR00606 899 SLIRE-------IKDAKEQDSPLETFLEKDQQEKEELISSKETSNK---KAQDKVNDIKEKVKNIHGYMKDIENKIQDGK 968 (1311)
T ss_pred HHHHH-------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44444 3344444444444444444444444433333332 2244444444444444555555555555554
Q ss_pred HHHHH
Q 000924 895 REALQ 899 (1222)
Q Consensus 895 veELe 899 (1222)
-..|.
T Consensus 969 ~~qL~ 973 (1311)
T TIGR00606 969 DDYLK 973 (1311)
T ss_pred HHHHH
Confidence 44343
No 19
>PRK11637 AmiB activator; Provisional
Probab=97.96 E-value=0.007 Score=69.60 Aligned_cols=73 Identities=10% Similarity=0.214 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (1222)
Q Consensus 661 DDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLn 733 (1222)
....++.+|..++++|..+......+..++..+..+...+..++..+..++......+....++|..++..|.
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888887777777777777776666666666666666666655555555555555555555443
No 20
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.92 E-value=0.0023 Score=68.60 Aligned_cols=91 Identities=23% Similarity=0.274 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 797 DQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHF 876 (1222)
Q Consensus 797 dQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeF 876 (1222)
..-+.+..+|..|..++..+...++.+......+..+.+.+..+|..|..+++.+-...+.+-.....|-.+.+.+...+
T Consensus 134 eR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 134 ERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677889999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHH
Q 000924 877 WKYKDDTKQAN 887 (1222)
Q Consensus 877 YqnRr~i~KAR 887 (1222)
+..+.....++
T Consensus 214 ~~~k~~~~~~~ 224 (237)
T PF00261_consen 214 EKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87777665443
No 21
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=0.012 Score=73.51 Aligned_cols=245 Identities=13% Similarity=0.229 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHH
Q 000924 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVD 742 (1222)
Q Consensus 663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVE 742 (1222)
.+|.+.++.++.+|+..++..++++..++.....|.....+...|+.+......++....+.+.+....|..++ .+..
T Consensus 681 ~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~--~~l~ 758 (1200)
T KOG0964|consen 681 KELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIK--TSLH 758 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH--HHHH
Confidence 34666677777777777777777777777776666666666666655555555444444444444444444444 3555
Q ss_pred HHHHHHHHHHHHhhcCC---CChHHHHH---HHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHH-H
Q 000924 743 DIDGSIRNMEHRIAHET---LPLKEEKQ---IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEAD-S 815 (1222)
Q Consensus 743 EIDarIa~LE~RIQTgS---LSLvEEKK---LLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEID-E 815 (1222)
.+......+|..+.+.- |++.+..+ +=.+|.+|......+.. .+ -.|..++.++..++. .
T Consensus 759 ~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~---er----------~~~~~rk~~le~~l~~k 825 (1200)
T KOG0964|consen 759 KLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALRE---ER----------IDIETRKTALEANLNTK 825 (1200)
T ss_pred HHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHH---HH----------HHHHHHHHHHHHHHHHH
Confidence 56666666666666543 56666543 33456555555433311 11 112222223322222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCH
Q 000924 816 LRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDR 895 (1222)
Q Consensus 816 LRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdv 895 (1222)
|...++.+.+++..+. ......++...+.++..+..+...+..++..|....+.+.+.--+.+..+-+++.|+.....
T Consensus 826 L~~r~~~l~~ei~~~~--d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~ 903 (1200)
T KOG0964|consen 826 LYKRVNELEQEIGDLN--DSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKD 903 (1200)
T ss_pred HHhhhhHHHHHhhhcc--cccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333222 11223344444444555555555555555566666666666666666666677777543222
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHhh
Q 000924 896 EALQHLCVNQVERVLELWNNNDEFRKEYVNSN 927 (1222)
Q Consensus 896 eELeelC~aEVEkFMelWN~dkeFRkDYeKrn 927 (1222)
. +. ...++|+.|..-+.-..=|++|.++|
T Consensus 904 ~-~~--~dKe~Ek~~~rk~~Ll~KreE~~ekI 932 (1200)
T KOG0964|consen 904 N-IN--FDKELEKLVRRKHMLLKKREECCEKI 932 (1200)
T ss_pred h-hh--hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22 23899999999888888888888884
No 22
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.84 E-value=0.0055 Score=67.01 Aligned_cols=169 Identities=17% Similarity=0.245 Sum_probs=95.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCCChHHH
Q 000924 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEE 765 (1222)
Q Consensus 686 I~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSLSLvEE 765 (1222)
|..++..+.-+++..+.-|+.+++++..++..+..+..+++.++..+..+. ..+.++..+|+.++..| ...-+..+=
T Consensus 15 lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e--~ei~~~r~r~~~~e~kl-~~v~~~~e~ 91 (239)
T COG1579 15 LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLE--SEIQEIRERIKRAEEKL-SAVKDEREL 91 (239)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-hccccHHHH
Confidence 333334444444455555555555555666666666666666666555443 46777788899999988 444455555
Q ss_pred HHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 766 KQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLL 845 (1222)
Q Consensus 766 KKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQ 845 (1222)
..|-.||..++..+..+ ..+...+.+++..|.+++..++..+..++..+-++. +. +.
T Consensus 92 ~aL~~E~~~ak~r~~~l-------------e~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~-------~~---~e 148 (239)
T COG1579 92 RALNIEIQIAKERINSL-------------EDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE-------AR---LE 148 (239)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HH
Confidence 66667777777775544 112233344444455555555554444443333333 22 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000924 846 GQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (1222)
Q Consensus 846 eElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnR 880 (1222)
.++..+++++...+.++..|....+.---.||+..
T Consensus 149 ~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri 183 (239)
T COG1579 149 EEVAEIREEGQELSSKREELKEKLDPELLSEYERI 183 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 23555556666677777777776666555566443
No 23
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.82 E-value=0.023 Score=73.82 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000924 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEY 700 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdEL 700 (1222)
...+..+|..++.++..+......+..+...++.+...|
T Consensus 824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666655444444444444444433333
No 24
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=0.0095 Score=74.42 Aligned_cols=171 Identities=13% Similarity=0.194 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHHHhh--------cCCCChH--HHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHH
Q 000924 740 SVDDIDGSIRNMEHRIA--------HETLPLK--EEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFL 809 (1222)
Q Consensus 740 SVEEIDarIa~LE~RIQ--------TgSLSLv--EEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaL 809 (1222)
....+..+|..|+.+.. .+..+-+ .+|||=.||.+|.+.. .+..++...++..+..+
T Consensus 357 ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i-------------~~~ke~e~~lq~e~~~~ 423 (1200)
T KOG0964|consen 357 EEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGI-------------NDTKEQENILQKEIEDL 423 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHH-------------hhhhhHHHHHHHHHHHH
Confidence 44555667777776332 2334433 4567888888887762 33344555667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000924 810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDL 889 (1222)
Q Consensus 810 KKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KAREL 889 (1222)
..++.+.-.+++++...+.+...++++..+++.++..+++++...|+.++.+=++||.....+....-.+.+.++.+-.-
T Consensus 424 e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r 503 (1200)
T KOG0964|consen 424 ESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNR 503 (1200)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77777777777777777888888888888888888888888888898888888888888887777666666655543222
Q ss_pred HhcCCHHHHHHHHHHHH-----HHHHHHHhCChHHHHHH
Q 000924 890 ASKGDREALQHLCVNQV-----ERVLELWNNNDEFRKEY 923 (1222)
Q Consensus 890 AakgdveELeelC~aEV-----EkFMelWN~dkeFRkDY 923 (1222)
.-.+=+..+...|...- =-.|++..-+..|+--.
T Consensus 504 ~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tav 542 (1200)
T KOG0964|consen 504 SVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAV 542 (1200)
T ss_pred hhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHH
Confidence 11222333333322111 12467777777777543
No 25
>PTZ00121 MAEBL; Provisional
Probab=97.67 E-value=0.22 Score=64.97 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=16.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHH
Q 000924 757 HETLPLKEEKQIIREIKQLKQRRE 780 (1222)
Q Consensus 757 TgSLSLvEEKKLLKEIKQLKKsRK 780 (1222)
-+-+...||.+.+.||.+++..|.
T Consensus 1239 aEEAkraEEeR~~EE~Rk~Eear~ 1262 (2084)
T PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARM 1262 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777664
No 26
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=0.04 Score=70.22 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000924 831 KKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND 888 (1222)
Q Consensus 831 sKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARE 888 (1222)
...+.+.+..++.+...+.....++.++-..+..|+++...++...+..|.-+..++.
T Consensus 534 ~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 534 SESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444555555555555555555555555555444444444
No 27
>PRK01156 chromosome segregation protein; Provisional
Probab=97.62 E-value=0.1 Score=64.90 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHH
Q 000924 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQT 692 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLnq~RdaI~eELka 692 (1222)
.+..+|..+.+++.+++.....|...+..
T Consensus 473 ~~~~~i~~l~~~i~~l~~~~~~l~~~~~~ 501 (895)
T PRK01156 473 HYNEKKSRLEEKIREIEIEVKDIDEKIVD 501 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554444444443
No 28
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.60 E-value=0.2 Score=60.92 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 804 EKMKFLRKEADSLRENVIKA--EAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (1222)
Q Consensus 804 EQIKaLKKEIDELRkKLkkL--eaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYq 878 (1222)
+++..+..+++.+..++... ...+..+.+++++++.++.++..++..+..++..+...+..++++..........
T Consensus 398 ~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 474 (650)
T TIGR03185 398 KELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKIN 474 (650)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555544432 2345555666666666666666666666666666666666666666554444333
No 29
>PRK01156 chromosome segregation protein; Provisional
Probab=97.59 E-value=0.033 Score=69.18 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 833 LHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (1222)
Q Consensus 833 K~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKE 868 (1222)
+++++..++..|.+++..+..++.+.-..+.+|++.
T Consensus 410 ~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~ 445 (895)
T PRK01156 410 ELNEINVKLQDISSKVSSLNQRIRALRENLDELSRN 445 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555544444444443
No 30
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.58 E-value=0.05 Score=65.23 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000924 809 LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND 888 (1222)
Q Consensus 809 LKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARE 888 (1222)
+.+++..+.+.+..+...+......|+.+...+.++.+++..+...+.+..+.+..||+.-.+....+-.++..+...+.
T Consensus 353 lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr 432 (569)
T PRK04778 353 LEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKR 432 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334444455555555555555555555555555555555554444444444444443
Q ss_pred HH
Q 000924 889 LA 890 (1222)
Q Consensus 889 LA 890 (1222)
+.
T Consensus 433 ~l 434 (569)
T PRK04778 433 YL 434 (569)
T ss_pred HH
Confidence 33
No 31
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.54 E-value=0.082 Score=64.15 Aligned_cols=49 Identities=16% Similarity=0.330 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000924 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD 710 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE 710 (1222)
...+..+++.+++++..+......+..++..++.+++.+..++..++.+
T Consensus 204 ~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~ 252 (650)
T TIGR03185 204 PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKK 252 (650)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777766666666666666666666666655554
No 32
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.50 E-value=0.13 Score=62.61 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=11.9
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHH
Q 000924 747 SIRNMEHRIAHETLPLKEEKQIIR 770 (1222)
Q Consensus 747 rIa~LE~RIQTgSLSLvEEKKLLK 770 (1222)
++..|..+.+.--.+|.+|.+-|+
T Consensus 409 rl~~L~~qWe~~R~pL~~e~r~lk 432 (594)
T PF05667_consen 409 RLVELAQQWEKHRAPLIEEYRRLK 432 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344444444444455555555444
No 33
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.50 E-value=0.027 Score=71.36 Aligned_cols=80 Identities=24% Similarity=0.316 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (1222)
Q Consensus 798 QKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFY 877 (1222)
++..+.++++-|.+++..+...+..|+.++..+..++.....+...+...+..+..++.---.+|+.|++-.+.....|=
T Consensus 395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG 474 (1074)
T KOG0250|consen 395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG 474 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc
Confidence 45556666667777777777777777777777777777777777777777777777777777777777776655555444
No 34
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.50 E-value=0.15 Score=65.54 Aligned_cols=39 Identities=31% Similarity=0.298 Sum_probs=30.7
Q ss_pred cchhhhcccccCCCcceeccccccccccccccccccccc
Q 000924 387 TEPEVLQGGIDGVDERSISVDNAAVESCTSESVYEESTA 425 (1222)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (1222)
.-|||||+..+|-++--...|--.+--|.-+-.|.+.|.
T Consensus 243 ISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPF 281 (1317)
T KOG0612|consen 243 ISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPF 281 (1317)
T ss_pred cCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcc
Confidence 469999999999777777778777777777777777664
No 35
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.48 E-value=0.12 Score=69.48 Aligned_cols=85 Identities=13% Similarity=0.229 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000924 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (1222)
Q Consensus 801 aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnR 880 (1222)
..++.+..++....++..++.+.+.++-.+..++++++..+..++..++.+...+.++-+.+.+.|..+.+..+.+....
T Consensus 1052 ~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~ 1131 (1930)
T KOG0161|consen 1052 DLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLS 1131 (1930)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555556677777788888888888889999999999999999999999999999999999999998888888777666
Q ss_pred HHHHH
Q 000924 881 DDTKQ 885 (1222)
Q Consensus 881 r~i~K 885 (1222)
..+..
T Consensus 1132 ~ele~ 1136 (1930)
T KOG0161|consen 1132 EELEE 1136 (1930)
T ss_pred HHHHH
Confidence 65543
No 36
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.46 E-value=0.26 Score=62.95 Aligned_cols=131 Identities=19% Similarity=0.252 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 798 QKDQIEEKMKFLRKEADSLRENVIKAEAAT-QAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHF 876 (1222)
Q Consensus 798 QKEaIqEQIKaLKKEIDELRkKLkkLeaEl-KELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeF 876 (1222)
+...++..|..++.+++.+++.+..++++. +.+..+..+..+++..|..+...+..++..+-.+++.++..........
T Consensus 359 ~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 359 EIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344566677788888888888888877777 6666666666666666666666666666666666666666666655555
Q ss_pred HHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhhhcC
Q 000924 877 WKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKT 937 (1222)
Q Consensus 877 YqnRr~i~KARELAakgdveELeelC~aEVEkFMelWN~dkeFRkDYeKrnl~Sl~rRqlT 937 (1222)
+.-++.+...+-- -+.+-..|+.+...+-++.+. |= .|+-.+|.-..||-.-
T Consensus 439 ~~i~~~i~~l~k~-i~~~~~~l~~lk~~k~dkvs~-------FG-~~m~~lL~~I~r~~~~ 490 (1074)
T KOG0250|consen 439 EHIEGEILQLRKK-IENISEELKDLKKTKTDKVSA-------FG-PNMPQLLRAIERRKRR 490 (1074)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhcccchhhh-------cc-hhhHHHHHHHHHHHhc
Confidence 5443333222111 123445555555555544443 33 6677777666665443
No 37
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.41 E-value=0.2 Score=66.84 Aligned_cols=292 Identities=14% Similarity=0.161 Sum_probs=151.6
Q ss_pred ecCCCCChHHHHHHHHHHHhHHHHHHHHHHH-------HHHhHHHHH----------HHH---HHHHHHHHHHHHHHHHH
Q 000924 655 VKVPRYDDENLREQIKAAQSKVDEKTRSRDA-------IRDDIQTIR----------ASY---KEYAEKLEAAISDERSA 714 (1222)
Q Consensus 655 VKvpRPDDEeLKAKIdeLqKEIeKLnq~Rda-------I~eELkalR----------aER---dELiEQLKeLReE~Kql 714 (1222)
|++=|-+.+-+..+++-+..+...+++.-.- ++..+...| .++ -....+++.|++-.+.+
T Consensus 1155 v~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~L 1234 (1822)
T KOG4674|consen 1155 VSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVL 1234 (1822)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHH
Confidence 3334446667777777776666555543333 222222211 111 22234555555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc----C--------CCHHHHHHHHHHHH-----HHh-------hcCCCChHHHHHHHH
Q 000924 715 RESLKSKRQEIDSVQSRINMMKN----A--------ISVDDIDGSIRNME-----HRI-------AHETLPLKEEKQIIR 770 (1222)
Q Consensus 715 Reer~EKIKEIk~LQeaLnKLRn----A--------kSVEEIDarIa~LE-----~RI-------QTgSLSLvEEKKLLK 770 (1222)
|.........+..|+..+++++. + ..+..+-+.+..|+ |++ ++....+.+=+++-.
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ 1314 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKS 1314 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 66666655555666666655531 0 12222222222222 222 234455667778888
Q ss_pred HHHHHHHHHHHhhhhccchhHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 771 EIKQLKQRREQISSSIGEHDEVQLAFDQ-KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK 849 (1222)
Q Consensus 771 EIKQLKKsRKkViAnAa~rAKIQESidQ-KEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElk 849 (1222)
+|.+|+........ ..+.+...+.. +++++.+++.+..++..+.+++..++..-..+...+.+.++++-++.....
T Consensus 1315 ei~~Lk~el~~ke~---~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~ 1391 (1822)
T KOG4674|consen 1315 EISRLKEELEEKEN---LIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKK 1391 (1822)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887653211 22333333443 356777888888888888888888877777777777777777777776666
Q ss_pred HHHHHHHHH-----------H--HHHHHHHHHHHHHHHHHHHhHH--------------HHHHHHHHHhcCCHHHHHHHH
Q 000924 850 AADEIRQEA-----------Y--KHWQSLKKQAYDKNQHFWKYKD--------------DTKQANDLASKGDREALQHLC 902 (1222)
Q Consensus 850 AL~EKRDEA-----------Y--eeIkeLRKERDEkNkeFYqnRr--------------~i~KARELAakgdveELeelC 902 (1222)
+.+..+... | .++..|++++.+.+.-+-..+. ....-+.---...+..+....
T Consensus 1392 ~~~~~~e~t~rk~e~~~~k~~~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~~~~e~~~~~i~~~~e~~ 1471 (1822)
T KOG4674|consen 1392 AHELMQEDTSRKLEKLKEKLELSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEEEKSTTERLLEEIKKLLETV 1471 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 655444322 2 4455555555443332222222 111100000112223333333
Q ss_pred HHHHHHHHHHHhC----ChHHHHHHHHhhhhhHhhhhcCCCCCCCCCCCCC
Q 000924 903 VNQVERVLELWNN----NDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEA 949 (1222)
Q Consensus 903 ~aEVEkFMelWN~----dkeFRkDYeKrnl~Sl~rRqlT~DGR~rnPDEkP 949 (1222)
+.....--..-.+ .+.++++|..--.+.+..=+-..+=|+|=|.+.-
T Consensus 1472 ~~~~~~~~~~~~~le~~k~e~~~e~e~~~~~~~~~~~E~lk~r~Rl~~eeq 1522 (1822)
T KOG4674|consen 1472 RKKTVDADSKSENLEGTKKELESEKEELKQRLTELAAENLKLRSRLAKEEQ 1522 (1822)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 3333333333333 3344455554445555555566777888888874
No 38
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.17 Score=62.67 Aligned_cols=29 Identities=3% Similarity=0.242 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q 000924 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQI 768 (1222)
Q Consensus 740 SVEEIDarIa~LE~RIQTgSLSLvEEKKL 768 (1222)
-.+-|+.+|..|..+++---..+.--|..
T Consensus 445 eletLn~k~qqls~kl~Dvr~~~tt~kt~ 473 (1118)
T KOG1029|consen 445 ELETLNFKLQQLSGKLQDVRVDITTQKTE 473 (1118)
T ss_pred HHHHHHHHHHHHhhhhhhheeccchHHHH
Confidence 56667778888888888766665555543
No 39
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.34 E-value=0.21 Score=62.61 Aligned_cols=236 Identities=12% Similarity=0.212 Sum_probs=136.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cc-----CCCHHHHHHHHHHH
Q 000924 684 DAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM-------KN-----AISVDDIDGSIRNM 751 (1222)
Q Consensus 684 daI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL-------Rn-----AkSVEEIDarIa~L 751 (1222)
+.+...+..+..+..-|...+..|+.++......+..|.+.+..++..++.+ +. -.-+.-|..+|..|
T Consensus 325 ~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~L 404 (775)
T PF10174_consen 325 EVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENL 404 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555677777777777777777777777777777666666654432 11 01223333344444
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 000924 752 EHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFL--------RKEADSLRENVIKA 823 (1222)
Q Consensus 752 E~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaL--------KKEIDELRkKLkkL 823 (1222)
+..+- ..++++-..-..|... ......-.....+..++..++.++..|... ..+++.+++++..+
T Consensus 405 ee~l~------ekd~ql~~~k~Rl~~~-~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~l 477 (775)
T PF10174_consen 405 EEQLR------EKDRQLDEEKERLSSQ-ADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKEL 477 (775)
T ss_pred HHHHH------HHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44442 3444444444444410 001011111233444444555554444333 55667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CCH-------
Q 000924 824 EAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASK-GDR------- 895 (1222)
Q Consensus 824 eaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAak-gdv------- 895 (1222)
+..+..+.+++.+....+..++.+.-.+..-..+.+.+|..|...+...++.+-..-..+.+++..+-. ..+
T Consensus 478 k~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev 557 (775)
T PF10174_consen 478 KAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEV 557 (775)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHH
Confidence 777777777777777777777777777777788888888888888877777776666666553322111 111
Q ss_pred HH---HHHHHHHHHHHHHHHHhCChHHHHHHHHh
Q 000924 896 EA---LQHLCVNQVERVLELWNNNDEFRKEYVNS 926 (1222)
Q Consensus 896 eE---LeelC~aEVEkFMelWN~dkeFRkDYeKr 926 (1222)
.. --.-|.+||||.|...-.-..-+.+-.+-
T Consensus 558 ~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~k 591 (775)
T PF10174_consen 558 TRYREESEKAQAEVERLLDILREAENEKNDKEKK 591 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 11 23457899999998776655555555444
No 40
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.21 Score=64.21 Aligned_cols=70 Identities=21% Similarity=0.233 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1222)
Q Consensus 805 QIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNk 874 (1222)
.+..+.++++.++.+++-++.+++-|..+-+....++.+++..+.+.....++.-..+..|...+..++.
T Consensus 487 el~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~ 556 (1293)
T KOG0996|consen 487 ELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQ 556 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3333444444444444444444444444444444444444444444443444433344444443333333
No 41
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.05 Score=67.07 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHH
Q 000924 694 RASYKEYAEKLEAAI 708 (1222)
Q Consensus 694 RaERdELiEQLKeLR 708 (1222)
|++|.++..|...-.
T Consensus 415 rar~qem~~Qk~req 429 (1118)
T KOG1029|consen 415 RARRQEMLNQKNREQ 429 (1118)
T ss_pred HHHHHHHHhhhhHHH
Confidence 677777777665433
No 42
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.27 E-value=0.072 Score=67.27 Aligned_cols=88 Identities=14% Similarity=0.268 Sum_probs=53.7
Q ss_pred cCCceeeecCCCCChHHHHHHHHHHHhHHHHHHH----HHHHHHHhHHHH----------H-HHHHHHHHHHHHHHHHHH
Q 000924 648 KQPFYFLVKVPRYDDENLREQIKAAQSKVDEKTR----SRDAIRDDIQTI----------R-ASYKEYAEKLEAAISDER 712 (1222)
Q Consensus 648 K~~FyYfVKvpRPDDEeLKAKIdeLqKEIeKLnq----~RdaI~eELkal----------R-aERdELiEQLKeLReE~K 712 (1222)
+.|+ ||+-=-.+....+...+++++.+|..+-+ .|=.=-+++.+. - .+.-.+...|..|+...+
T Consensus 113 k~S~-y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~ 191 (1072)
T KOG0979|consen 113 KESK-YFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEK 191 (1072)
T ss_pred CCcc-eeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHH
Confidence 5688 45555666788899999999888875553 333333333322 1 225555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 000924 713 SARESLKSKRQEIDSVQSRINMMK 736 (1222)
Q Consensus 713 qlReer~EKIKEIk~LQeaLnKLR 736 (1222)
++......+-..++.|...+.++.
T Consensus 192 ~Le~~~~~~~~~l~~L~~~~~~l~ 215 (1072)
T KOG0979|consen 192 SLEDKLTTKTEKLNRLEDEIDKLE 215 (1072)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 666666666666666665555553
No 43
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.26 E-value=0.66 Score=56.01 Aligned_cols=111 Identities=15% Similarity=0.273 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHhHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000924 662 DENLREQIKAAQSKVDEKT-----RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLn-----q~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLR 736 (1222)
.+.+...|-.++..+.+++ ..-+.+...+.....+-..+...|..|.......|..+.......+.++..|-..+
T Consensus 81 ~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~ 160 (569)
T PRK04778 81 LPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANR 160 (569)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567777777777665333 44455667777778888888888888888888888888888888888888775433
Q ss_pred --cCCCHHHHHHHHHHHHHHhh-----cCCCChHHHHHHHHHH
Q 000924 737 --NAISVDDIDGSIRNMEHRIA-----HETLPLKEEKQIIREI 772 (1222)
Q Consensus 737 --nAkSVEEIDarIa~LE~RIQ-----TgSLSLvEEKKLLKEI 772 (1222)
...+.+.|+.+|..||.... |.+--..+=+.+|.+|
T Consensus 161 ~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l 203 (569)
T PRK04778 161 FSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQL 203 (569)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 23688888888888886654 3334444444444444
No 44
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.26 E-value=0.3 Score=63.45 Aligned_cols=73 Identities=16% Similarity=0.394 Sum_probs=56.3
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (1222)
Q Consensus 661 DDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLn 733 (1222)
+.+.|+++++.+...+..+.....++...+.....+.+.+...+..+..++++.+..+.....+...++..+.
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5779999999999999999988888888888877777777777777777777666666666666665555443
No 45
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.25 E-value=0.46 Score=52.16 Aligned_cols=56 Identities=14% Similarity=0.415 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESL 718 (1222)
Q Consensus 663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer 718 (1222)
..+...|..++..|..+...+..+..++..++.....+..++.........+...+
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el 105 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEEL 105 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777766666666666665555555555444444444333333333
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.15 E-value=0.58 Score=51.44 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHH
Q 000924 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIR 694 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalR 694 (1222)
.+...|+.+..+..++...++.+..++..++
T Consensus 58 ~lr~~id~~~~eka~l~~e~~~l~~e~~~~r 88 (312)
T PF00038_consen 58 ELRRQIDDLSKEKARLELEIDNLKEELEDLR 88 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhHHhhhhhhHHHHHHHHH
Confidence 3444555444444444444444444444433
No 47
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.14 E-value=0.59 Score=55.19 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=30.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID 726 (1222)
Q Consensus 666 KAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk 726 (1222)
..++++.+++|.+++........+.+++......+...+..+..++.+.-..+.+..+.|.
T Consensus 37 ~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 37 DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 3556666666666665555555555555444444444444444444444333333333333
No 48
>PTZ00121 MAEBL; Provisional
Probab=97.10 E-value=1.3 Score=58.34 Aligned_cols=8 Identities=38% Similarity=0.156 Sum_probs=4.3
Q ss_pred chhHHHHh
Q 000924 505 DLVCKEVL 512 (1222)
Q Consensus 505 ~~~~~~~~ 512 (1222)
-..|.+.|
T Consensus 946 f~eC~e~l 953 (2084)
T PTZ00121 946 FGGCLEYL 953 (2084)
T ss_pred HHHHHHHH
Confidence 34566654
No 49
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.03 E-value=1 Score=54.51 Aligned_cols=112 Identities=16% Similarity=0.341 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHhHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000924 662 DENLREQIKAAQSKVDE-----KTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeK-----Lnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLR 736 (1222)
.+++...|..++..+.. .++.-..+...+.....+-..+...|..|.......|..+....+..+.++..|-..+
T Consensus 77 ~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~ 156 (560)
T PF06160_consen 77 LPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHS 156 (560)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666665552 2344445566666777777777777777777777777777777777777777664433
Q ss_pred --cCCCHHHHHHHHHHHHHHhh-----cCCCChHHHHHHHHHHH
Q 000924 737 --NAISVDDIDGSIRNMEHRIA-----HETLPLKEEKQIIREIK 773 (1222)
Q Consensus 737 --nAkSVEEIDarIa~LE~RIQ-----TgSLSLvEEKKLLKEIK 773 (1222)
...+.+.|+.++..||.... |.+--..+=+.+|.+|+
T Consensus 157 ~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~ 200 (560)
T PF06160_consen 157 FSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLK 200 (560)
T ss_pred hhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 23578888888877776554 23334445555555543
No 50
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.01 E-value=0.47 Score=61.79 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000924 834 HREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT 883 (1222)
Q Consensus 834 ~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i 883 (1222)
++.....+...+.+...+......+-....+++.+++.....+-..++.+
T Consensus 471 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 520 (1201)
T PF12128_consen 471 LEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARREL 520 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444555555555555554444443333
No 51
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.99 E-value=0.49 Score=63.06 Aligned_cols=73 Identities=14% Similarity=0.287 Sum_probs=45.2
Q ss_pred eecCCCCChHHHHHHHHHHHhHHHHHHHHHHHH------------------------------HHhHHHHHHHHHHHHHH
Q 000924 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAI------------------------------RDDIQTIRASYKEYAEK 703 (1222)
Q Consensus 654 fVKvpRPDDEeLKAKIdeLqKEIeKLnq~RdaI------------------------------~eELkalRaERdELiEQ 703 (1222)
|..+|.+-..+.++.|..|+.+++.+-..=... ..+|..++.+|.++..+
T Consensus 773 ~p~~p~~gr~are~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~f~~~pe~~~~~~~~~~~~~~~~ 852 (1486)
T PRK04863 773 FPEVPLFGRAAREKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERA 852 (1486)
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCcchhcCCCcHHHHHHHHHHHHHHHHH
Confidence 466677788899999999988887555421111 12234456777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000924 704 LEAAISDERSARESLKSKRQEID 726 (1222)
Q Consensus 704 LKeLReE~KqlReer~EKIKEIk 726 (1222)
|..+..+..+.+..+..-...+.
T Consensus 853 l~~~~~~~~~~~~~~~~~~~~~~ 875 (1486)
T PRK04863 853 LADHESQEQQQRSQLEQAKEGLS 875 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666655555544333333
No 52
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.93 E-value=1.4 Score=55.80 Aligned_cols=42 Identities=10% Similarity=0.235 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHh
Q 000924 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI 782 (1222)
Q Consensus 740 SVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkV 782 (1222)
...+|..+...|+..+++- +.......+=..++.|...+..+
T Consensus 601 ~~~~l~~~~~~l~~~~~~~-~~~~~~~e~~~~~~~l~~~~~~l 642 (908)
T COG0419 601 KLKELEERLSQLEELLQSL-ELSEAENELEEAEEELESELEKL 642 (908)
T ss_pred HHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888888888777 55555656666666666665555
No 53
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.89 E-value=0.67 Score=59.15 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000924 802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD 881 (1222)
Q Consensus 802 IqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr 881 (1222)
+...|+.++..+++-.+.+.+...+...|.-..+++..++.....++..+......+-.++..|+...+.....
T Consensus 792 l~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~------ 865 (1174)
T KOG0933|consen 792 LEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKD------ 865 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH------
Confidence 33344444445555445444444444445544444444444444444444444444444444444433332222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 000924 882 DTKQANDLASKGDREALQHLCVNQVERVLELW 913 (1222)
Q Consensus 882 ~i~KARELAakgdveELeelC~aEVEkFMelW 913 (1222)
..++... =++..+-+..|++|+..++..|
T Consensus 866 -~~~~~~e--l~~~k~k~~~~dt~i~~~~~~~ 894 (1174)
T KOG0933|consen 866 -VKKAQAE--LKDQKAKQRDIDTEISGLLTSQ 894 (1174)
T ss_pred -HHHHHHH--HHHHHHHHHhhhHHHhhhhhHH
Confidence 1121111 1334445566777777777777
No 54
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.89 E-value=0.65 Score=61.38 Aligned_cols=39 Identities=8% Similarity=0.195 Sum_probs=20.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000924 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEK 703 (1222)
Q Consensus 665 LKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQ 703 (1222)
-..+|.+|+.+|..+......+..++..+..++..|...
T Consensus 740 R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 740 RLRRIAELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554444444443
No 55
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.88 E-value=0.13 Score=56.61 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000924 826 ATQAVKKLHREESEKLK 842 (1222)
Q Consensus 826 ElKELsKK~DEIkaEI~ 842 (1222)
++..+.+++..++.++.
T Consensus 118 ~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 118 EIEKLEKEIEDLKERLE 134 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 56
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.86 E-value=1.6 Score=51.73 Aligned_cols=58 Identities=14% Similarity=0.345 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKS 720 (1222)
Q Consensus 663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~E 720 (1222)
..+...|+.+.+.|....+.+.+|..+|+.+..+-+.+..+|.+....++.++..+..
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~ 98 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 3566666666666666666666666666555555555555555555444444444433
No 57
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.85 E-value=1.9 Score=52.51 Aligned_cols=66 Identities=12% Similarity=0.297 Sum_probs=27.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (1222)
Q Consensus 667 AKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaL 732 (1222)
.+...|.+....+......+..++..+.........+...|..+.+.+.........+.+.|...+
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~ 215 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQL 215 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444333333333344444444333
No 58
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.84 E-value=0.58 Score=59.68 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (1222)
Q Consensus 802 IqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFY 877 (1222)
...+|..|+.+++.++.++.......+++.+++.++++.+..+..++..+-...++...++....-.+.++...+-
T Consensus 841 ~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~ 916 (1174)
T KOG0933|consen 841 LEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVT 916 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHH
Confidence 3344455555555555555555555555555555555555555554444444445555555444444444444443
No 59
>PRK09039 hypothetical protein; Validated
Probab=96.82 E-value=0.35 Score=55.30 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=34.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESL 718 (1222)
Q Consensus 665 LKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer 718 (1222)
|...|...++++.++......+-..+.--+.+...+..++..++.++..++..+
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r 97 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAER 97 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665555666666667777777777777777666444433
No 60
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.82 E-value=0.43 Score=60.17 Aligned_cols=70 Identities=17% Similarity=0.166 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHH
Q 000924 833 LHREESEKLKRLLGQFK-AADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCV 903 (1222)
Q Consensus 833 K~DEIkaEI~ELQeElk-AL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~ 903 (1222)
.++++++++.+.+.++. .|.++.|.+--++++|.++++...+..|.+--.|.|.|+|.++-+ ..|+++.+
T Consensus 476 alee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lq-dqlqe~~d 546 (1243)
T KOG0971|consen 476 ALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQ-DQLQELTD 546 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 34556667777666654 788999999999999999999999999999999999999986522 34444433
No 61
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.81 E-value=2.3 Score=52.81 Aligned_cols=205 Identities=18% Similarity=0.216 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 000924 695 ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN-MMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIK 773 (1222)
Q Consensus 695 aERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLn-KLRnAkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIK 773 (1222)
.-|.++..++-.|..+...+-.+++..+++++.|+..|. +|.. .-..|-|..|+.|...=+- | =|+.|.+=.
T Consensus 402 sl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~-DeLaEkdE~I~~lm~EGEk--L----SK~ql~qs~ 474 (961)
T KOG4673|consen 402 SLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK-DELAEKDEIINQLMAEGEK--L----SKKQLAQSA 474 (961)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH--h----HHHHHHHHH
Confidence 345566666666666655666666666777776666553 2221 2345567777776432111 1 155666555
Q ss_pred HHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 000924 774 QLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLR--------------ENVIKAEAATQAVKKLHREESE 839 (1222)
Q Consensus 774 QLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELR--------------kKLkkLeaElKELsKK~DEIka 839 (1222)
..+++|.+...+-.+-+ ...++|+.|-.|.+-|+ ..+.++.++++-..+.|...+.
T Consensus 475 iIkKLRAk~ke~etl~~----------K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~ 544 (961)
T KOG4673|consen 475 IIKKLRAKIKEAETLEE----------KKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRA 544 (961)
T ss_pred HHHHHHHHhhhhhHHHH----------HhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 55555554433221111 12223334433333333 3333334444444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH---HhCC
Q 000924 840 KLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLEL---WNNN 916 (1222)
Q Consensus 840 EI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMel---WN~d 916 (1222)
.+..|+.++.++..--|.+|..+ .++..|- +-..++=+..+..||+-.-.- --..
T Consensus 545 ~~~~le~~~~a~qat~d~a~~Dl---------------------qk~nrlk-Qdear~~~~~lvqqv~dLR~~L~~~Eq~ 602 (961)
T KOG4673|consen 545 LAAALEAQALAEQATNDEARSDL---------------------QKENRLK-QDEARERESMLVQQVEDLRQTLSKKEQQ 602 (961)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhH---------------------HHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555422 1111110 111111222223333322211 1223
Q ss_pred hHHHHHHHHhhhhhHhhhhcCC
Q 000924 917 DEFRKEYVNSNIRSTLRRLKTL 938 (1222)
Q Consensus 917 keFRkDYeKrnl~Sl~rRqlT~ 938 (1222)
-++|+||.+.-..-|-||+.--
T Consensus 603 aarrEd~~R~Ei~~LqrRlqaa 624 (961)
T KOG4673|consen 603 AARREDMFRGEIEDLQRRLQAA 624 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888887643
No 62
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.81 E-value=0.36 Score=59.99 Aligned_cols=140 Identities=21% Similarity=0.332 Sum_probs=71.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCCChHHH
Q 000924 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEE 765 (1222)
Q Consensus 686 I~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSLSLvEE 765 (1222)
|+.+|+..|..=.+|+.++..|..-.+.++..+..++++.+.|+..+..|.+ +-..=...|..||.+ |.+|
T Consensus 430 LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~--aRq~DKq~l~~LEkr-------L~eE 500 (697)
T PF09726_consen 430 LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ--ARQQDKQSLQQLEKR-------LAEE 500 (697)
T ss_pred HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-------HHHH
Confidence 4455566666666777777766666677777777778888888777766532 111112346677776 4455
Q ss_pred HHHHHHH-HHHHHHHHHhhh--hccchh--HHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 766 KQIIREI-KQLKQRREQISS--SIGEHD--EVQLAF-DQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLH 834 (1222)
Q Consensus 766 KKLLKEI-KQLKKsRKkViA--nAa~rA--KIQESi-dQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~ 834 (1222)
++.=..+ +||...|+.-.. -.+.++ .-+..+ +--+....+.+.|-.|+..||.+++..++.+..+..++
T Consensus 501 ~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 501 RRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333 234333332111 011111 000111 11223445555566666666665555555555554444
No 63
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.81 E-value=0.2 Score=60.48 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 693 IRASYKEYAEKLEAAISDERSARESL 718 (1222)
Q Consensus 693 lRaERdELiEQLKeLReE~KqlReer 718 (1222)
++.+...+.++++.|+.+...++..+
T Consensus 160 ~krr~~~le~e~~~Lk~en~rl~~~l 185 (546)
T KOG0977|consen 160 LKRRIKALEDELKRLKAENSRLREEL 185 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33444444444444444433333333
No 64
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.78 E-value=1.7 Score=52.97 Aligned_cols=19 Identities=5% Similarity=0.331 Sum_probs=9.9
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q 000924 892 KGDREALQHLCVNQVERVL 910 (1222)
Q Consensus 892 kgdveELeelC~aEVEkFM 910 (1222)
+...++|+..|..++.+.-
T Consensus 263 ~~nR~diE~~Y~~kI~~i~ 281 (546)
T KOG0977|consen 263 RQNRKDIESWYKRKIQEIR 281 (546)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 3445555555555555544
No 65
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.72 E-value=1.6 Score=52.54 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN 873 (1222)
Q Consensus 798 QKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkN 873 (1222)
+...++..+..|+.+|...+..+..++.........+..++.++..++.++..+...-.++-..+..|...+..+.
T Consensus 303 E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~ 378 (522)
T PF05701_consen 303 EASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLS 378 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555555555555555555555554444433333333333333333
No 66
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.68 E-value=1.4 Score=52.70 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH-HHHHHHHHH
Q 000924 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIRE-IKQLKQRRE 780 (1222)
Q Consensus 739 kSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKE-IKQLKKsRK 780 (1222)
+++.+|++.|..+=+..+..+|+|.|-..-++- |..|.....
T Consensus 462 ~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~ 504 (622)
T COG5185 462 KSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILE 504 (622)
T ss_pred HHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHH
Confidence 488999999999999999999999988766553 444544433
No 67
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.68 E-value=1.6 Score=54.18 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=27.2
Q ss_pred CChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHH
Q 000924 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (1222)
Q Consensus 660 PDDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaE 696 (1222)
++.+++-.+|+.|++.++-+...|++++.+++.+|.+
T Consensus 402 sl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~e 438 (961)
T KOG4673|consen 402 SLREEYHQRVATLEKKVQALTKERDALRREQKSLKKE 438 (961)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3556677778888888888888888888877766543
No 68
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.65 E-value=2.2 Score=50.31 Aligned_cols=206 Identities=16% Similarity=0.164 Sum_probs=93.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCC
Q 000924 681 RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL 760 (1222)
Q Consensus 681 q~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSL 760 (1222)
-.|++.+.++.+.+.+|.....++.+++..+-.....+....+....||..|+.+ -..-.+|+.+.|+
T Consensus 102 ~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l---------~~qr~ql~aq~qs--- 169 (499)
T COG4372 102 TEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTL---------AEQRRQLEAQAQS--- 169 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH---
Confidence 3455555555555555555555555554444333333333333444444444332 2333444444444
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 761 PLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKD----QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHRE 836 (1222)
Q Consensus 761 SLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKE----aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DE 836 (1222)
=+.+-|.|-.-..+|+-.+..+..-. ++ +.|.+ .-.+.+..+.+|+......+...-+++....++++.
T Consensus 170 l~a~~k~LQ~s~~Qlk~~~~~L~~r~---~~----ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q 242 (499)
T COG4372 170 LQASQKQLQASATQLKSQVLDLKLRS---AQ----IEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQ 242 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222223334444333331110 11 11211 112334444555554444444444444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000924 837 ESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQV 906 (1222)
Q Consensus 837 IkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEV 906 (1222)
...+|..-.+.+.+--.+-+.+-....-|-.+...+..+|..|++....+--+. .|.+-+--.+-.+++
T Consensus 243 ~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q~~a~~-rGQvla~a~~rv~q~ 311 (499)
T COG4372 243 KAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQ-RGQVLAGAAQRVAQA 311 (499)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHH
Confidence 555555544444444444444444555555566667777778888776554442 455544433333443
No 69
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.62 E-value=2.5 Score=57.21 Aligned_cols=66 Identities=11% Similarity=0.161 Sum_probs=41.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (1222)
Q Consensus 668 KIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLn 733 (1222)
....+.+.|..+.++-..+..+...++.+++.+..+|..+..+...+...+......+.+|+....
T Consensus 53 ~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~s 118 (1822)
T KOG4674|consen 53 QLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKS 118 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHH
Confidence 344455555566666666666666677777777777777777766666666666665555555443
No 70
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.61 E-value=3.9 Score=54.99 Aligned_cols=152 Identities=14% Similarity=0.193 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH----HHHHHHHHHhhhhccchhH--HHHHH----h---HHHHHHHH
Q 000924 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREI----KQLKQRREQISSSIGEHDE--VQLAF----D---QKDQIEEK 805 (1222)
Q Consensus 739 kSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEI----KQLKKsRKkViAnAa~rAK--IQESi----d---QKEaIqEQ 805 (1222)
-|.++|...+..++.+++.-.-.+.+-++-+..+ ++|++....+....+.... .++.. . +...+-++
T Consensus 435 ~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~ 514 (1486)
T PRK04863 435 LTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQ 514 (1486)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 4889999999999988887776666655544433 3444444333332222111 11111 1 01111223
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 806 MKFLRKEADSLRENVIKAE---AAT--------------QAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (1222)
Q Consensus 806 IKaLKKEIDELRkKLkkLe---aEl--------------KELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKE 868 (1222)
+-.++.++.+|+..+.... .-+ ..+..-..+....+..+......+.+.|...-..++.|..+
T Consensus 515 ~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~ 594 (1486)
T PRK04863 515 LQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQAR 594 (1486)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443221111 011 12222333444455566666666666666666666666665
Q ss_pred HHHHHH---HHHHhHHHHHHHHHHH
Q 000924 869 AYDKNQ---HFWKYKDDTKQANDLA 890 (1222)
Q Consensus 869 RDEkNk---eFYqnRr~i~KARELA 890 (1222)
...... .|.++...+.+-++..
T Consensus 595 i~~l~~~ap~W~~a~~al~~L~eq~ 619 (1486)
T PRK04863 595 IQRLAARAPAWLAAQDALARLREQS 619 (1486)
T ss_pred HHHHHHhChHHHhhHHHHHHHHHhc
Confidence 555444 6888888887777764
No 71
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.60 E-value=1.9 Score=49.01 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000924 812 EADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT 883 (1222)
Q Consensus 812 EIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i 883 (1222)
.+..+...-..++.++..+..+|++.++.|...++-+......+++...++..|-++-......|-.+-..+
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l 274 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKAL 274 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 777777777788888889999999999999999999999999999999999888887766665555554443
No 72
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.55 E-value=1.2 Score=53.90 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=37.7
Q ss_pred CChHHHHHHHHHHHhHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 660 YDDENLREQIKAAQSKVDEKTRSRD-----AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (1222)
Q Consensus 660 PDDEeLKAKIdeLqKEIeKLnq~Rd-----aI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~ 727 (1222)
|..+.|..+++.+...+.+....-. +.+.-+..++.+-..|...+..+=.-++.+...+-.++.++..
T Consensus 161 ~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~ 233 (560)
T PF06160_consen 161 PAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKE 233 (560)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHH
Confidence 4567888888888888776654222 1233344445555555544444444445555555555555443
No 73
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.55 E-value=2.2 Score=49.10 Aligned_cols=116 Identities=14% Similarity=0.236 Sum_probs=56.8
Q ss_pred HHHHHHHH---HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Q 000924 665 LREQIKAA---QSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS---------------------DERSARESLKS 720 (1222)
Q Consensus 665 LKAKIdeL---qKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLRe---------------------E~KqlReer~E 720 (1222)
+..|.+++ .++++++...|++....+..++.+.+.|..+.+++.. -+...|..-..
T Consensus 4 L~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~ 83 (319)
T PF09789_consen 4 LQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKK 83 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHH
Confidence 34444443 3455666666776666666666665555555554441 11233333333
Q ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHHHHh
Q 000924 721 KRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRREQI 782 (1222)
Q Consensus 721 KIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSL--SLvEEKKLLKEIKQLKKsRKkV 782 (1222)
...+++.|++.|..+. ....-+...|+.+.-..+.... .+.|--.+|.++..++....++
T Consensus 84 L~~Ev~~Lrqkl~E~q--GD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQ--GDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred HHHHHHHHHHHHHHHh--chHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444432 2333334444443322222221 1256667777777777776555
No 74
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.54 E-value=0.64 Score=59.59 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (1222)
Q Consensus 799 KEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYq 878 (1222)
...+..+++.++..+..+...+..+...++++..-+.++...+.+|+...-.+..+-.++..++.+++.+.......++.
T Consensus 404 ~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e 483 (1141)
T KOG0018|consen 404 RAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHE 483 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 44677888888888888888888898889999999999999999999988888888888888888888888888888887
Q ss_pred hHHHHHHHH
Q 000924 879 YKDDTKQAN 887 (1222)
Q Consensus 879 nRr~i~KAR 887 (1222)
.-|.++...
T Consensus 484 ~sR~~~~~e 492 (1141)
T KOG0018|consen 484 GSRRSRKQE 492 (1141)
T ss_pred cHHHHHHHH
Confidence 766665433
No 75
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.54 E-value=1.6 Score=53.71 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 000924 743 DIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISS 784 (1222)
Q Consensus 743 EIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViA 784 (1222)
.|..+++.|.....+.. .+=++.+.+|+.|+...+.+..
T Consensus 423 pL~~e~r~lk~~~~~~~---~e~~~~~~~ik~~r~~~k~~~~ 461 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRE---SESKQKLQEIKELREEIKEIEE 461 (594)
T ss_pred HHHHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444322 3334566667666666555533
No 76
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.50 E-value=1.1 Score=53.94 Aligned_cols=216 Identities=17% Similarity=0.214 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHH-------HHHh----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 000924 662 DENLREQIKAAQSKVDEKTRSRDA-------IRDD----IQTIRASYKEYAEKLEAAISDE---RSARESLKSKRQEIDS 727 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq~Rda-------I~eE----LkalRaERdELiEQLKeLReE~---KqlReer~EKIKEIk~ 727 (1222)
.+.|...|..++..+......... +..+ ...+.........++..|+.++ +.+...+..-..++..
T Consensus 174 ve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~ 253 (522)
T PF05701_consen 174 VEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELES 253 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666544332222 2211 1222333333333344444333 2233333344444555
Q ss_pred HHHHHHhhcc--CCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH----HHHHHHHHHHhhhhccchhHHHHHHhHHHH
Q 000924 728 VQSRINMMKN--AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIRE----IKQLKQRREQISSSIGEHDEVQLAFDQKDQ 801 (1222)
Q Consensus 728 LQeaLnKLRn--AkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKE----IKQLKKsRKkViAnAa~rAKIQESidQKEa 801 (1222)
|+..|..... .....+-...+..+...+.+-..-|.+=|.-|.. +..|+..-..+ +.++.........
T Consensus 254 Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL------~~ELe~~K~el~~ 327 (522)
T PF05701_consen 254 LQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESL------RSELEKEKEELER 327 (522)
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 5554433221 0111122333444444455555555555555543 33333332222 1222222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000924 802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD 881 (1222)
Q Consensus 802 IqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr 881 (1222)
++++.......+..|..++...+.++..+...-...+..+..+...++.+...-..+-......+.+.........+.+.
T Consensus 328 lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 328 LKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444443333333333444444444444444444444444444444444444444443
Q ss_pred HH
Q 000924 882 DT 883 (1222)
Q Consensus 882 ~i 883 (1222)
.+
T Consensus 408 ~i 409 (522)
T PF05701_consen 408 AI 409 (522)
T ss_pred HH
Confidence 33
No 77
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.42 E-value=1 Score=48.73 Aligned_cols=187 Identities=14% Similarity=0.236 Sum_probs=96.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH
Q 000924 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGS 747 (1222)
Q Consensus 668 KIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDar 747 (1222)
||..++.++.........+..++.....++...-.++..|..++..+-..+..--..+..+...|..+. +..++..+.
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e--~~~de~er~ 79 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAE--KRADESERA 79 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH--HHHHHHCHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 566666666666666666666666666666666666655555544444333332222223333333222 345555556
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 748 IRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAAT 827 (1222)
Q Consensus 748 Ia~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaEl 827 (1222)
.+.||.+..+.. ..|..|+...+.+... ..++.-..+.+..++..+-..+......+..+...+
T Consensus 80 ~k~lE~r~~~~e----------eri~~lE~~l~ea~~~------~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki 143 (237)
T PF00261_consen 80 RKVLENREQSDE----------ERIEELEQQLKEAKRR------AEEAERKYEEVERKLKVLEQELERAEERAEAAESKI 143 (237)
T ss_dssp HHHHHHHHHHHH----------HHHHHCHHHHHHHHHH------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH----------HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH
Confidence 666665554321 2233333333322111 112222233444555556666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 828 QAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDK 872 (1222)
Q Consensus 828 KELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEk 872 (1222)
..+...+..+...|..|......+....+.+-.+|..|..++.+.
T Consensus 144 ~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 144 KELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 666655555556666665555555555566666666666666554
No 78
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.39 E-value=1.1 Score=53.86 Aligned_cols=31 Identities=10% Similarity=0.010 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 000924 861 HWQSLKKQAYDKNQHFWKYKDDTKQANDLAS 891 (1222)
Q Consensus 861 eIkeLRKERDEkNkeFYqnRr~i~KARELAa 891 (1222)
.+..|.++..+..+.|..+-..+++.|.-++
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a 377 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIRRKAA 377 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777666666666553
No 79
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.39 E-value=2.7 Score=52.01 Aligned_cols=30 Identities=3% Similarity=0.219 Sum_probs=12.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000924 681 RSRDAIRDDIQTIRASYKEYAEKLEAAISD 710 (1222)
Q Consensus 681 q~RdaI~eELkalRaERdELiEQLKeLReE 710 (1222)
++-..+..++..++.++...+.++..|...
T Consensus 29 qr~~qmseev~~L~eEk~~~~~~V~eLE~s 58 (617)
T PF15070_consen 29 QRMQQMSEEVRTLKEEKEHDISRVQELERS 58 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444333
No 80
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.39 E-value=2.3 Score=53.52 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000924 804 EKMKFLRKEADSLRENV 820 (1222)
Q Consensus 804 EQIKaLKKEIDELRkKL 820 (1222)
..++.+..+++.++...
T Consensus 291 elVk~~qeeLd~lkqt~ 307 (1265)
T KOG0976|consen 291 ELVKELQEELDTLKQTR 307 (1265)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555443
No 81
>PRK09039 hypothetical protein; Validated
Probab=96.36 E-value=0.56 Score=53.71 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 803 EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDK 872 (1222)
Q Consensus 803 qEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEk 872 (1222)
+.++..+..++...+......+..+..|+.++..++.++..|+..+.++..+..++...+..|...+...
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666667777777777777777777777777777777777777666655543
No 82
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.34 E-value=4.4 Score=50.22 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 000924 859 YKHWQSLKKQAYDKNQHFWKY 879 (1222)
Q Consensus 859 YeeIkeLRKERDEkNkeFYqn 879 (1222)
-.++..|..+++.....+-+|
T Consensus 222 ~qE~~~Lq~q~dq~~~~Lqqy 242 (617)
T PF15070_consen 222 SQEAQSLQEQRDQYLGHLQQY 242 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 83
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.32 E-value=1.6 Score=57.41 Aligned_cols=192 Identities=11% Similarity=0.162 Sum_probs=115.2
Q ss_pred CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000924 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLREN 819 (1222)
Q Consensus 740 SVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkK 819 (1222)
..+.+..+|..+-....|......-...+..|-..+...+..+..-.+ ..+....+.......+..++.++-.
T Consensus 796 d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E---~~~k~~~~~~~~i~~l~~~~~e~k~---- 868 (1294)
T KOG0962|consen 796 DLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIE---CLQKEVIEQEREISRLINLRNELKE---- 868 (1294)
T ss_pred HHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 455566678888888888665555555555555554333333311100 0011111111111122222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHH
Q 000924 820 VIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQ 899 (1222)
Q Consensus 820 LkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELe 899 (1222)
....+...-.+...+..++..|++....++.+++++-+.+.-|+...++....|++-....+. -++.++..+..+.
T Consensus 869 ---~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~-~~~~aqk~~~~in 944 (1294)
T KOG0962|consen 869 ---EKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNT-SEKLAQKKRNDIN 944 (1294)
T ss_pred ---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHH
Confidence 222233333455566688888999999999999999999999999999999988877666554 3343444444443
Q ss_pred HHHHHHHHHHHHHHhCChHHHH----HHHHhhhhhHhhhhcCCCCCCCCCC
Q 000924 900 HLCVNQVERVLELWNNNDEFRK----EYVNSNIRSTLRRLKTLDGRSLGPD 946 (1222)
Q Consensus 900 elC~aEVEkFMelWN~dkeFRk----DYeKrnl~Sl~rRqlT~DGR~rnPD 946 (1222)
.=+..|.....-+..||. +|-..+++.+..|+..+|+|+++--
T Consensus 945 ----e~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~ 991 (1294)
T KOG0962|consen 945 ----EKVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIK 991 (1294)
T ss_pred ----HHHHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777777777775 3445678889999999999887543
No 84
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.30 E-value=1.6 Score=49.36 Aligned_cols=15 Identities=0% Similarity=-0.097 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q 000924 695 ASYKEYAEKLEAAIS 709 (1222)
Q Consensus 695 aERdELiEQLKeLRe 709 (1222)
..|..+..|++-++.
T Consensus 115 d~r~~m~~q~~~vK~ 129 (325)
T PF08317_consen 115 DMRLLMDNQFQLVKT 129 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666666655
No 85
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.29 E-value=4.4 Score=49.69 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHh
Q 000924 742 DDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI 782 (1222)
Q Consensus 742 EEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkV 782 (1222)
+-|...+..|.++|.--.+|..+=+++-.|-.+|.+....+
T Consensus 311 e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i 351 (581)
T KOG0995|consen 311 EKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKI 351 (581)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666677777777777777777777776665433
No 86
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.25 E-value=5.8 Score=50.80 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHH-------HHHHHHHH
Q 000924 810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD----------------EIRQEA-------YKHWQSLK 866 (1222)
Q Consensus 810 KKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~----------------EKRDEA-------YeeIkeLR 866 (1222)
-+|+.-++.++..++.....|+.+++.....|..|+++.+++- +.|-+. .+.+.++.
T Consensus 402 ~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~ 481 (1243)
T KOG0971|consen 402 QKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMN 481 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555554555556666666666666666665542 111111 22222223
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHh--hhhcCCCCCCCC
Q 000924 867 KQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTL--RRLKTLDGRSLG 944 (1222)
Q Consensus 867 KERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMelWN~dkeFRkDYeKrnl~Sl~--rRqlT~DGR~rn 944 (1222)
+|+-+-|. +.-.++++-=|++ +|.+++|+.--.+..|...-+-.+=..||+---+-|-.-.+ -++.+.--++..
T Consensus 482 EQL~Esn~---ele~DLreEld~~-~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~q 557 (1243)
T KOG0971|consen 482 EQLQESNR---ELELDLREELDMA-KGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQQ 557 (1243)
T ss_pred HHHHHHHH---HHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcC
Confidence 33333222 2223445555554 68888888888888887777777777788755443322221 234444444444
Q ss_pred CC
Q 000924 945 PD 946 (1222)
Q Consensus 945 PD 946 (1222)
|+
T Consensus 558 ~~ 559 (1243)
T KOG0971|consen 558 PP 559 (1243)
T ss_pred CC
Confidence 44
No 87
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.13 E-value=5.2 Score=51.65 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=15.0
Q ss_pred hccccccCCCCCchhHHHHh
Q 000924 493 NMETEFTGEESDDLVCKEVL 512 (1222)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~ 512 (1222)
||----.|..-++++|-=+|
T Consensus 45 NmIiGpNGSGKSSiVcAIcL 64 (1072)
T KOG0979|consen 45 NMIIGPNGSGKSSIVCAICL 64 (1072)
T ss_pred eeEECCCCCCchHHHHHHHH
Confidence 55555667888999998765
No 88
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.11 E-value=2 Score=48.69 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQA 869 (1222)
Q Consensus 810 KKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKER 869 (1222)
..++..+|.++..+..++.+..+++.+++.++..+..++.++.+++.++-..|.++.+.+
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554445544544444444444454444444444444444444444433
No 89
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.10 E-value=2 Score=48.13 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHH
Q 000924 662 DENLREQIKAAQSKVDEKTRSR 683 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq~R 683 (1222)
...+..++..++.++..+....
T Consensus 76 ~~~~~~~l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 76 ATDVEADAAELESQVLRLEAEV 97 (423)
T ss_pred cchhhhHHHHHHHHHHHHHHHH
Confidence 3345556666666555554433
No 90
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.05 E-value=6.3 Score=51.81 Aligned_cols=16 Identities=6% Similarity=-0.020 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhCChH
Q 000924 903 VNQVERVLELWNNNDE 918 (1222)
Q Consensus 903 ~aEVEkFMelWN~dke 918 (1222)
+.++|++|..-|....
T Consensus 762 q~~LEqe~~~r~~~~~ 777 (1317)
T KOG0612|consen 762 QSMLEQEISKRLSLQR 777 (1317)
T ss_pred HHHHHHHHHHhhhhHH
Confidence 3788888888887764
No 91
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.93 E-value=8.8 Score=50.37 Aligned_cols=63 Identities=10% Similarity=0.227 Sum_probs=29.9
Q ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000924 673 QSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1222)
Q Consensus 673 qKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL 735 (1222)
+.+|....+.-.++...+...+.+-++...+-+.+-.+-+..+...++-+++++.|-..|+.+
T Consensus 1421 ~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~F 1483 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDF 1483 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444555555555666666666555555443
No 92
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.63 Score=58.32 Aligned_cols=70 Identities=7% Similarity=0.098 Sum_probs=45.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000924 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1222)
Q Consensus 666 KAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL 735 (1222)
++...+++..+.+++..+..+..++..++..-.+|.-+.++|.++...+........++++-|+..|+..
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3344556666667777777777777777766666666666666666666666666666666666666643
No 93
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.90 E-value=4.1 Score=54.29 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHH
Q 000924 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYK 698 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERd 698 (1222)
..+|..+|+.++.+|..+...+..+...+..+..++.
T Consensus 744 i~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~ 780 (1353)
T TIGR02680 744 IAELDARLAAVDDELAELARELRALGARQRALADELA 780 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777666666666666655555544433
No 94
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.82 E-value=11 Score=50.19 Aligned_cols=30 Identities=10% Similarity=0.213 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHh------CChHHHHHHHHh
Q 000924 897 ALQHLCVNQVERVLELWN------NNDEFRKEYVNS 926 (1222)
Q Consensus 897 ELeelC~aEVEkFMelWN------~dkeFRkDYeKr 926 (1222)
+.--.+.+++.+|-..+. ..+.||+.|++-
T Consensus 1062 g~~ke~e~~i~~~k~eL~~~~~kd~~~nyr~~~ie~ 1097 (1294)
T KOG0962|consen 1062 GEMKQYESQIKKLKQELREKDFKDAEKNYRKALIEL 1097 (1294)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHH
Confidence 333445678888866665 567777777664
No 95
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.78 E-value=3.5 Score=44.30 Aligned_cols=88 Identities=15% Similarity=0.296 Sum_probs=44.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHH
Q 000924 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDG 746 (1222)
Q Consensus 667 AKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDa 746 (1222)
-+|..|+.+|..+...-..+..+.+.++.-..---.-|.........+=..+...-.|++.|+..|.+... ..-++..
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~--~~r~~~~ 89 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQE--QERELER 89 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 35555666666555555555555555442222211122222222334444567777788888887766542 3444444
Q ss_pred HHHHHHHHhh
Q 000924 747 SIRNMEHRIA 756 (1222)
Q Consensus 747 rIa~LE~RIQ 756 (1222)
+|...+..+.
T Consensus 90 klk~~~~el~ 99 (194)
T PF15619_consen 90 KLKDKDEELL 99 (194)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 96
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.72 E-value=0.89 Score=56.80 Aligned_cols=99 Identities=14% Similarity=0.317 Sum_probs=58.4
Q ss_pred HHHHHHHhH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhccCCCHH
Q 000924 667 EQIKAAQSK-VDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESL---KSKRQEIDSVQSRINMMKNAISVD 742 (1222)
Q Consensus 667 AKIdeLqKE-IeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer---~EKIKEIk~LQeaLnKLRnAkSVE 742 (1222)
.-+..+..+ |.++...|.+|...+..++.+++.-..+|..++++++.++... .++++++..-|+.|
T Consensus 543 ~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L---------- 612 (717)
T PF10168_consen 543 QATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKL---------- 612 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 334444444 4566667888877777777777777777777776665555433 55566665555544
Q ss_pred HHHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHHHHH
Q 000924 743 DIDGSIRNMEHRIAH--ETLPLKEEKQIIREIKQLKQR 778 (1222)
Q Consensus 743 EIDarIa~LE~RIQT--gSLSLvEEKKLLKEIKQLKKs 778 (1222)
..|+..|=..++. -.||. .||++.+|+..++..
T Consensus 613 --~~R~~~vl~~l~~~~P~LS~-AEr~~~~EL~~~~~~ 647 (717)
T PF10168_consen 613 --MKRVDRVLQLLNSQLPVLSE-AEREFKKELERMKDQ 647 (717)
T ss_pred --HHHHHHHHHHHhccCCCCCH-HHHHHHHHHHHHHHH
Confidence 3334433333322 22444 358888887777665
No 97
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.59 E-value=2.5 Score=48.29 Aligned_cols=30 Identities=13% Similarity=-0.016 Sum_probs=14.4
Q ss_pred CChHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000924 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDD 689 (1222)
Q Consensus 660 PDDEeLKAKIdeLqKEIeKLnq~RdaI~eE 689 (1222)
|..+-+.---.+|.+-|.+-+..=.++.++
T Consensus 63 P~LElY~~sC~EL~~~I~egr~~~~~~E~e 92 (312)
T smart00787 63 PLLELYQFSCKELKKYISEGRDLFKEIEEE 92 (312)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445444444555555555544433333333
No 98
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.58 E-value=2.8 Score=49.16 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHH
Q 000924 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQT 692 (1222)
Q Consensus 661 DDEeLKAKIdeLqKEIeKLnq~RdaI~eELka 692 (1222)
|+..+.+.+..++.++..+...+..|.++++.
T Consensus 91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 91 DNGNEENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777666666655543
No 99
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=95.58 E-value=2.9 Score=48.31 Aligned_cols=134 Identities=16% Similarity=0.266 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHHhhcCC--CChH----HHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHH
Q 000924 739 ISVDDIDGSIRNMEHRIAHET--LPLK----EEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKE 812 (1222)
Q Consensus 739 kSVEEIDarIa~LE~RIQTgS--LSLv----EEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKE 812 (1222)
..+.+||+||..||..|.+++ |+.- .-+-|+.-|..|......+- . ...+.|..+++.|..+
T Consensus 209 a~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~----------~--~~Ld~i~~rl~~L~~~ 276 (388)
T PF04912_consen 209 ARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLD----------P--AKLDSIERRLKSLLSE 276 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcC----------H--HHHHHHHHHHHHHHHH
Confidence 478999999999999999943 2222 25678888888888744441 1 1356777888888888
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhH
Q 000924 813 ADSLRENVIKA------EAATQAVKKLH---REESEKLKRLLGQFKAADEIR---QEAYKHWQSLKKQAYDKNQHFWKYK 880 (1222)
Q Consensus 813 IDELRkKLkkL------eaElKELsKK~---DEIkaEI~ELQeElkAL~EKR---DEAYeeIkeLRKERDEkNkeFYqnR 880 (1222)
++.|.+..... ..++.+|+..+ +.+..-|..|-++++.|.... ...+..+..|-.....+...+-+++
T Consensus 277 ~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~ 356 (388)
T PF04912_consen 277 LEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWE 356 (388)
T ss_pred HHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776543322 12233332222 222234444444444333322 2334444444444444444444444
Q ss_pred HHHH
Q 000924 881 DDTK 884 (1222)
Q Consensus 881 r~i~ 884 (1222)
..+.
T Consensus 357 ~~L~ 360 (388)
T PF04912_consen 357 ELLN 360 (388)
T ss_pred HHHH
Confidence 4433
No 100
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.57 E-value=1.3 Score=45.34 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 690 IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (1222)
Q Consensus 690 LkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaL 732 (1222)
|..+|.+.+....+...+.++.+.+......+=.+|.+|+..+
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~ 44 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKN 44 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777766777665544
No 101
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.50 E-value=11 Score=48.04 Aligned_cols=14 Identities=21% Similarity=0.238 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHh
Q 000924 901 LCVNQVERVLELWN 914 (1222)
Q Consensus 901 lC~aEVEkFMelWN 914 (1222)
.|..+-+++++..+
T Consensus 440 ea~~eker~~e~l~ 453 (775)
T PF10174_consen 440 EALREKERLQERLE 453 (775)
T ss_pred HHHHHHHHHHHHHH
Confidence 46677777777653
No 102
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.40 E-value=12 Score=47.81 Aligned_cols=9 Identities=22% Similarity=0.483 Sum_probs=6.3
Q ss_pred CCCCCCccC
Q 000924 945 PDEEAPLIR 953 (1222)
Q Consensus 945 PDEkPpvip 953 (1222)
|++..||--
T Consensus 456 ~~~~CPvCg 464 (908)
T COG0419 456 AGEKCPVCG 464 (908)
T ss_pred CCCCCCCCC
Confidence 778877743
No 103
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.36 E-value=14 Score=48.56 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID 726 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk 726 (1222)
+..|..++++++.-+.-+.+.+....+ .+++-....++.+.-+.+..+.+.++...|++++
T Consensus 1421 ~~~l~~~~ae~eq~~~~v~ea~~~ase----A~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~ 1481 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAKLSASE----AQQSAQRALEQANASRSQMEESNRELRNLIQQVR 1481 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655544443333222 2222233334444444444444444444444443
No 104
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.27 E-value=7.4 Score=44.61 Aligned_cols=47 Identities=6% Similarity=0.026 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHH
Q 000924 663 ENLREQIKAAQSKVDEKTRSRDAIRDDI-----QTIRASYKEYAEKLEAAIS 709 (1222)
Q Consensus 663 EeLKAKIdeLqKEIeKLnq~RdaI~eEL-----kalRaERdELiEQLKeLRe 709 (1222)
.+|++.|.+=+..+.++.+.-..-+--+ .+--..|..+..|++-++.
T Consensus 73 ~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~ 124 (312)
T smart00787 73 KELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKT 124 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3777777776666665554433222111 1112445555555555544
No 105
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.06 E-value=9.3 Score=44.95 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 000924 771 EIKQLKQRRE 780 (1222)
Q Consensus 771 EIKQLKKsRK 780 (1222)
+|.+|+..+.
T Consensus 255 ~l~~l~~~l~ 264 (498)
T TIGR03007 255 RIEALEKQLD 264 (498)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 106
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.83 E-value=13 Score=45.14 Aligned_cols=41 Identities=10% Similarity=0.295 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHh
Q 000924 742 DDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI 782 (1222)
Q Consensus 742 EEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkV 782 (1222)
+.|...|..|.+++....++..+=+.+.+|=.+|-+....+
T Consensus 347 ~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i 387 (622)
T COG5185 347 KALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKI 387 (622)
T ss_pred HHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33445677777777777777777777777777776665433
No 107
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.77 E-value=19 Score=46.89 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 000924 764 EEKQIIREIKQLKQRREQISSS 785 (1222)
Q Consensus 764 EEKKLLKEIKQLKKsRKkViAn 785 (1222)
.+|.++.|-.+|...-+.+...
T Consensus 437 ~~K~L~~E~ekl~~e~~t~~~s 458 (1195)
T KOG4643|consen 437 LEKKLQFELEKLLEETSTVTRS 458 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666555444333
No 108
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.76 E-value=17 Score=46.33 Aligned_cols=66 Identities=11% Similarity=0.126 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID 726 (1222)
Q Consensus 661 DDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk 726 (1222)
|...++..+.+++.+|..|...-..+..+++++++-+..+.+++++..-++...+..+...++++-
T Consensus 93 dv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLs 158 (1265)
T KOG0976|consen 93 DVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELS 158 (1265)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 444556666666666665555555555556666666666666666555555555555544444444
No 109
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.73 E-value=0.87 Score=50.03 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=42.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 790 DEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQA 869 (1222)
Q Consensus 790 AKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKER 869 (1222)
..|...+...+....-|..+++|++.|..+....-+++..|+.-++.+...|..+..+.....+....+|+++..|+.+.
T Consensus 18 ~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~i 97 (230)
T PF10146_consen 18 NEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEI 97 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444333333445566666666666655555555555555555545554444444444444444455444444444
Q ss_pred HHHH
Q 000924 870 YDKN 873 (1222)
Q Consensus 870 DEkN 873 (1222)
+++.
T Consensus 98 n~~R 101 (230)
T PF10146_consen 98 NELR 101 (230)
T ss_pred HHHH
Confidence 4433
No 110
>PRK10869 recombination and repair protein; Provisional
Probab=94.72 E-value=7.5 Score=47.33 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000924 861 HWQSLKKQAYDKNQHFWKYKDDTKQANDLA 890 (1222)
Q Consensus 861 eIkeLRKERDEkNkeFYqnRr~i~KARELA 890 (1222)
.+..|.++..+..+.|......+.++|.-+
T Consensus 342 ~l~~Le~e~~~l~~~l~~~A~~LS~~R~~a 371 (553)
T PRK10869 342 DLETLALAVEKHHQQALETAQKLHQSRQRY 371 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555444
No 111
>PF13514 AAA_27: AAA domain
Probab=94.66 E-value=17 Score=47.45 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=6.5
Q ss_pred hhccccccccC
Q 000924 108 AELGDQKFESG 118 (1222)
Q Consensus 108 ~~~~~~~~~~~ 118 (1222)
-++|..-|..|
T Consensus 112 gdlg~~Lf~ag 122 (1111)
T PF13514_consen 112 GDLGQLLFSAG 122 (1111)
T ss_pred hHHHHHHHHhc
Confidence 34666666655
No 112
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=94.64 E-value=4.1 Score=52.72 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 000924 863 QSLKKQAYDKNQHFWKYKDDTKQANDLASKG--DREALQHLCVNQ 905 (1222)
Q Consensus 863 keLRKERDEkNkeFYqnRr~i~KARELAakg--dveELeelC~aE 905 (1222)
.++|+..-.+++.|..-+.+.-+.-+|.++- -+-.|++||..-
T Consensus 1301 ~Kqk~di~kl~~~lv~kQKAYP~M~QlQ~ksealI~qLRelC~~h 1345 (1439)
T PF12252_consen 1301 QKQKEDIVKLNDFLVEKQKAYPAMVQLQFKSEALIIQLRELCEAH 1345 (1439)
T ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3445555555666666666665666665553 367889999864
No 113
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.60 E-value=6.4 Score=49.44 Aligned_cols=57 Identities=12% Similarity=0.314 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKS 720 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~E 720 (1222)
.|++.|..|+.+|+..++.=.+|+..+..+-.-...+..+|..++.+..+++..+..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~ 478 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQN 478 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888887777777777777666554446666666666665555554433
No 114
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.55 E-value=12 Score=48.96 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000924 815 SLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT 883 (1222)
Q Consensus 815 ELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i 883 (1222)
++.++++.++..+..+.+..+.+...|+++...+..+....++.-.....+..+-++.|..|..-+.-+
T Consensus 406 elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql 474 (1141)
T KOG0018|consen 406 ELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQL 474 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 344455555555556666666666666666666555555555555555555555566666665555544
No 115
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.44 E-value=12 Score=43.14 Aligned_cols=136 Identities=14% Similarity=0.218 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHH-------HHH
Q 000924 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFL-------RKE 812 (1222)
Q Consensus 740 SVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaL-------KKE 812 (1222)
..+.|..+|+.||. |-++|-.|..+|...-..+... .+.-|.+-..|....+.+|..| ..+
T Consensus 161 ~le~Lq~Klk~LEe----------EN~~LR~Ea~~L~~et~~~Eek--EqqLv~dcv~QL~~An~qia~LseELa~k~Ee 228 (306)
T PF04849_consen 161 QLEALQEKLKSLEE----------ENEQLRSEASQLKTETDTYEEK--EQQLVLDCVKQLSEANQQIASLSEELARKTEE 228 (306)
T ss_pred hHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHhhccHH--HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Confidence 35778888887775 3344445555555433222110 0000111111222223333333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000924 813 ADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAN 887 (1222)
Q Consensus 813 IDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KAR 887 (1222)
....+.+|..|-.++-.+..++..+-.+-.+|+..+.+..+....+-.++..|+..+.+...-|...+..+++-|
T Consensus 229 ~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 229 NRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444445555555555666666666666777777777777777777788888887777777777666665433
No 116
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.31 E-value=13 Score=42.96 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000924 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE 711 (1222)
Q Consensus 663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~ 711 (1222)
+.+..+|..|+++ -..+..++...|.+...|...++.|+...
T Consensus 23 ~~l~~~~~sL~qe-------n~~Lk~El~~ek~~~~~L~~e~~~lr~~s 64 (310)
T PF09755_consen 23 EQLRKRIESLQQE-------NRVLKRELETEKARCKHLQEENRALREAS 64 (310)
T ss_pred HHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666665554 33455677778888888888888887753
No 117
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.27 E-value=12 Score=42.25 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHhHHHHHHH
Q 000924 662 DENLREQIKAAQSKVDEKTR 681 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq 681 (1222)
...++.++..++.++..+..
T Consensus 83 l~~l~~~~~~l~a~~~~l~~ 102 (423)
T TIGR01843 83 AAELESQVLRLEAEVARLRA 102 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45688888888877766544
No 118
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.97 E-value=23 Score=44.63 Aligned_cols=110 Identities=15% Similarity=0.231 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----
Q 000924 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK---- 880 (1222)
Q Consensus 805 QIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnR---- 880 (1222)
+|+.+..+++.||+++.....-+.++...-..++.++..-.+++..+.-+..++-.++..+.+.+.+++..|..--
T Consensus 588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~ 667 (786)
T PF05483_consen 588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKS 667 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 3445555555555555444444555555555555666666666666666666666777777777777776665422
Q ss_pred -------HHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHh
Q 000924 881 -------DDTKQANDLASK--GDREALQHLCVNQVERVLELWN 914 (1222)
Q Consensus 881 -------r~i~KARELAak--gdveELeelC~aEVEkFMelWN 914 (1222)
..+.++|-.|.. +..++..--|+-.+--+++|--
T Consensus 668 ~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALME 710 (786)
T PF05483_consen 668 ISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALME 710 (786)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 224555555544 5667777778776666666653
No 119
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=93.89 E-value=21 Score=43.78 Aligned_cols=121 Identities=12% Similarity=0.136 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000924 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRE 818 (1222)
Q Consensus 739 kSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRk 818 (1222)
..+.+|+.+|-.|-|++-| .|+-+=..|..++...... ++.++. .|..=-+.+.+.+..++.
T Consensus 358 ~~lkDLd~~~~aLs~rld~------qEqtL~~rL~e~~~e~~~~---------~r~~le---kl~~~q~e~~~~l~~v~e 419 (531)
T PF15450_consen 358 RQLKDLDDHILALSWRLDL------QEQTLNLRLSEAKNEWESD---------ERKSLE---KLDQWQNEMEKHLKEVQE 419 (531)
T ss_pred HHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHHHHHHHH---------HHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4777888888888888655 2444444455554432211 111221 222122344556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000924 819 NVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT 883 (1222)
Q Consensus 819 KLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i 883 (1222)
+++.+...+..|+.+++-++.+++-. ++.+-..-|.++.++|.++..+....--.+...
T Consensus 420 KVd~LpqqI~~vs~Kc~~~Ksd~d~k------IdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~ 478 (531)
T PF15450_consen 420 KVDSLPQQIEEVSDKCDLHKSDSDTK------IDTEGKAREREVGAVRQELATLLSSVQLLKEDN 478 (531)
T ss_pred HHHhhhHHHHHHHHHHHHHHhhhhhh------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77777777777777777766665544 445556667888888998888777655444443
No 120
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.88 E-value=14 Score=41.85 Aligned_cols=63 Identities=10% Similarity=0.256 Sum_probs=27.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (1222)
Q Consensus 668 KIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQe 730 (1222)
+|..++++...+...-..|..++..+..+++++..++..+.++++.++..+....+.|...+.
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444444444444444444444444444443333
No 121
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.70 E-value=12 Score=43.49 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000924 700 YAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1222)
Q Consensus 700 LiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL 735 (1222)
..++.+.|..+...++..+.+-..+++-||..+.+.
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 334444444444444444455555555555555444
No 122
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.66 E-value=8.8 Score=47.59 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRL 844 (1222)
Q Consensus 801 aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~EL 844 (1222)
++..+++.++.+|.+++.+++.. .-|++|+.++.-|
T Consensus 321 ~le~~l~~~~~~leel~~kL~~~--------sDYeeIK~ELsiL 356 (629)
T KOG0963|consen 321 ALEKELKAKISELEELKEKLNSR--------SDYEEIKKELSIL 356 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh--------ccHHHHHHHHHHH
Confidence 33444444444444444443332 2345555555544
No 123
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.55 E-value=25 Score=43.54 Aligned_cols=181 Identities=17% Similarity=0.232 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH-----HHHHHHHHHhhcCCCChHHHHHH
Q 000924 694 RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDID-----GSIRNMEHRIAHETLPLKEEKQI 768 (1222)
Q Consensus 694 RaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEID-----arIa~LE~RIQTgSLSLvEEKKL 768 (1222)
-++-..|..++-.|..++|++|..+..+..|.+.|-+....++...+--|++ ..|+.+-+ .|-++
T Consensus 99 aakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~Kf----------RE~Rl 168 (772)
T KOG0999|consen 99 AAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKF----------REARL 168 (772)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH----------HHHHH
Confidence 3555667777888888888888888888888777766555543211111221 22333222 24556
Q ss_pred HHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 769 IREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLR---KEADSLRENVIKAEAATQAVKKLHREESEKLKRLL 845 (1222)
Q Consensus 769 LKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLK---KEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQ 845 (1222)
|.+-+.|+.. |. .++.++..|| -|+..++-.++-+..++.-++..+ .+..
T Consensus 169 lseYSELEEE------NI--------------sLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~-------ee~~ 221 (772)
T KOG0999|consen 169 LSEYSELEEE------NI--------------SLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQL-------EEAI 221 (772)
T ss_pred HHHHHHHHHh------cc--------------hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 6666555543 11 2233333332 345555555555555554444332 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q 000924 846 GQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVN 925 (1222)
Q Consensus 846 eElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMelWN~dkeFRkDYeK 925 (1222)
.-..-+..+..+|..-++.=|+++..+.+.+-+|+.. ++- -|..
T Consensus 222 ~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~---------------------------------e~~---~~~n 265 (772)
T KOG0999|consen 222 RLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNA---------------------------------EDI---SSLN 265 (772)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcch---------------------------------hhh---hhhh
Confidence 2122334466677777666666655554443333211 111 1445
Q ss_pred hhhhhHhhhhcCCCCCCCCCCCC
Q 000924 926 SNIRSTLRRLKTLDGRSLGPDEE 948 (1222)
Q Consensus 926 rnl~Sl~rRqlT~DGR~rnPDEk 948 (1222)
.++.|+++ -...||-.-|||-+
T Consensus 266 ~l~~sldg-k~~eDga~pn~d~e 287 (772)
T KOG0999|consen 266 HLLFSLDG-KFGEDGAEPNNDPE 287 (772)
T ss_pred hhheeccc-ccccccCCCCCChh
Confidence 56667766 67789998888877
No 124
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.46 E-value=14 Score=44.77 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000924 698 KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1222)
Q Consensus 698 dELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL 735 (1222)
..+..+++.++.+++.++....+..++++-++..|..+
T Consensus 164 ~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 164 RELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444333
No 125
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=93.41 E-value=26 Score=44.62 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=12.0
Q ss_pred CCChHHHHHHHHHHHhHHH
Q 000924 659 RYDDENLREQIKAAQSKVD 677 (1222)
Q Consensus 659 RPDDEeLKAKIdeLqKEIe 677 (1222)
.|..+.|+.+|+.|..+++
T Consensus 454 ~~~~~~L~e~IeKLk~E~d 472 (762)
T PLN03229 454 KPSELALNEMIEKLKKEID 472 (762)
T ss_pred CCCChHHHHHHHHHHHHHH
Confidence 4555666677776666665
No 126
>PF13166 AAA_13: AAA domain
Probab=93.37 E-value=25 Score=43.10 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=6.8
Q ss_pred CChHHHHHHHHH
Q 000924 660 YDDENLREQIKA 671 (1222)
Q Consensus 660 PDDEeLKAKIde 671 (1222)
|..++++.+|..
T Consensus 265 ~l~~~~~~~l~~ 276 (712)
T PF13166_consen 265 PLSEERKERLEK 276 (712)
T ss_pred CCcHHHHHHHHH
Confidence 445566666654
No 127
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.35 E-value=18 Score=41.19 Aligned_cols=64 Identities=19% Similarity=0.398 Sum_probs=33.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (1222)
Q Consensus 669 IdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaL 732 (1222)
|...+.++..+......|..+++.+-++-.++..+++.++.+..+.+..+....++|+.+.+.|
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555555555555555555444444
No 128
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.34 E-value=18 Score=46.28 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=16.9
Q ss_pred CCccchhHHhhhccccccCCCCCch
Q 000924 482 KDDHRSKELEENMETEFTGEESDDL 506 (1222)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (1222)
.+||++.+|-+---+--||...++|
T Consensus 455 dn~~~kEeLlrV~l~~~~gn~p~tl 479 (970)
T KOG0946|consen 455 DNDQLKEELLRVPLAVDTGNDPDTL 479 (970)
T ss_pred HhHHHHHHHHhhhhcccCCCCchHH
Confidence 3567777777766666677665555
No 129
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=93.30 E-value=0.71 Score=49.52 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Q 000924 1090 TRAALRAQKEAEQKEKEREKRARKK 1114 (1222)
Q Consensus 1090 a~A~~raqKEAEkKeKErEKKAKKK 1114 (1222)
++.+.+.+|+.+++.++.+++.|+.
T Consensus 154 ~k~eek~~keeekr~~eE~~~~k~~ 178 (216)
T PF11600_consen 154 AKEEEKRKKEEEKRKKEEEKRLKKE 178 (216)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5556677777777777766555544
No 130
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.15 E-value=28 Score=43.02 Aligned_cols=15 Identities=27% Similarity=0.497 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhC
Q 000924 901 LCVNQVERVLELWNN 915 (1222)
Q Consensus 901 lC~aEVEkFMelWN~ 915 (1222)
.++++|++.+++...
T Consensus 439 kaqaevdrlLeilke 453 (654)
T KOG4809|consen 439 KAQAEVDRLLEILKE 453 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346778887777643
No 131
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.14 E-value=2.6 Score=42.45 Aligned_cols=24 Identities=17% Similarity=0.520 Sum_probs=18.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000924 885 QANDLASKGDREALQHLCVNQVERVL 910 (1222)
Q Consensus 885 KARELAakgdveELeelC~aEVEkFM 910 (1222)
.+.+| +.|+..|+.+|..||+..|
T Consensus 97 ~veEL--~~Dv~DlK~myr~Qi~~lv 120 (120)
T PF12325_consen 97 EVEEL--RADVQDLKEMYREQIDQLV 120 (120)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHhC
Confidence 45556 7889999999999998653
No 132
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.10 E-value=0.026 Score=69.06 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 809 LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (1222)
Q Consensus 809 LKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKE 868 (1222)
++.++..++.++..++.++.....+++.+.-++..|.+++.++...+.....++..||..
T Consensus 361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~ 420 (713)
T PF05622_consen 361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRET 420 (713)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555545555554555554555555555555555555555555444443
No 133
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.03 E-value=9.8 Score=38.19 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 827 TQAVKKLHREESEKLKRLLGQFKAADEIRQ 856 (1222)
Q Consensus 827 lKELsKK~DEIkaEI~ELQeElkAL~EKRD 856 (1222)
...|.+.+.++...+..|..+++-|+.+.+
T Consensus 100 k~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555555555566666665555543
No 134
>PF13166 AAA_13: AAA domain
Probab=93.00 E-value=29 Score=42.66 Aligned_cols=6 Identities=83% Similarity=1.237 Sum_probs=3.0
Q ss_pred CCCCCC
Q 000924 324 GSGKSS 329 (1222)
Q Consensus 324 ~~~~~~ 329 (1222)
|||||.
T Consensus 26 GsGKSt 31 (712)
T PF13166_consen 26 GSGKST 31 (712)
T ss_pred CCCHHH
Confidence 455554
No 135
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.99 E-value=15 Score=39.68 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 000924 719 KSKRQEIDSVQSRINMM 735 (1222)
Q Consensus 719 ~EKIKEIk~LQeaLnKL 735 (1222)
..-+.-|++|+..+..+
T Consensus 23 ~~NL~lIksLKeei~em 39 (201)
T PF13851_consen 23 LNNLELIKSLKEEIAEM 39 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444455555554444
No 136
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.96 E-value=11 Score=49.70 Aligned_cols=92 Identities=10% Similarity=0.259 Sum_probs=42.2
Q ss_pred CCChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q 000924 659 RYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK-- 736 (1222)
Q Consensus 659 RPDDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLR-- 736 (1222)
.|+...++.+|+++.+. +... ...+...++. --.+.++++...++.++|+..+..-=++++.+++.|..++
T Consensus 22 ~p~~~~iq~~l~~~~~~--~~~~-~k~~~~~l~~----tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~ 94 (1109)
T PRK10929 22 APDEKQITQELEQAKAA--KTPA-QAEIVEALQS----ALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDE 94 (1109)
T ss_pred CCCHHHHHHHHHHhhcC--CChh-hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 36777899999887663 1111 1112222211 1112222333333333444444333333444444443221
Q ss_pred -----cCCCHHHHHHHHHHHHHHhhc
Q 000924 737 -----NAISVDDIDGSIRNMEHRIAH 757 (1222)
Q Consensus 737 -----nAkSVEEIDarIa~LE~RIQT 757 (1222)
...|..+|+.++.....+++.
T Consensus 95 ~~~~~~~~s~~~Leq~l~~~~~~L~~ 120 (1109)
T PRK10929 95 PRSVPPNMSTDALEQEILQVSSQLLE 120 (1109)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHH
Confidence 114678888877766666443
No 137
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=92.88 E-value=2.7 Score=52.43 Aligned_cols=75 Identities=12% Similarity=0.160 Sum_probs=44.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 795 AFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAY 870 (1222)
Q Consensus 795 SidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERD 870 (1222)
.......+.++|..|..++..++..+..++.....+...+.+....+..++.++..+...-.+.+ ...++|+++.
T Consensus 232 l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~ 306 (670)
T KOG0239|consen 232 LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLH 306 (670)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33334455556777777777777777777777777776666666666666555555554444444 3334444333
No 138
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.79 E-value=15 Score=46.42 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 834 HREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (1222)
Q Consensus 834 ~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFY 877 (1222)
...-++.+..|..+++.+...-.+....+...+.++-......+
T Consensus 414 ~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLA 457 (717)
T PF09730_consen 414 SREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELA 457 (717)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33334567777777777777777777777666666655444333
No 139
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.70 E-value=34 Score=42.73 Aligned_cols=62 Identities=10% Similarity=0.131 Sum_probs=29.5
Q ss_pred eecCCCCChHHHHHHHHHHHhHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 654 LVKVPRYDDENLREQIKAAQSKVD---EKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (1222)
Q Consensus 654 fVKvpRPDDEeLKAKIdeLqKEIe---KLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlRe 716 (1222)
-+.+.. .+|++-++|..+-.+.= .+..++........-+..+..++..++.....++..|+.
T Consensus 158 ~Is~~~-~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 158 AIEFRS-EDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred EEEEec-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 36677777754433321 111222223333333455555566666555555555554
No 140
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.63 E-value=41 Score=43.57 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=26.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000924 685 AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM 734 (1222)
Q Consensus 685 aI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnK 734 (1222)
.+-..+...|.....+..++.++.-++.+.+-...+-+.+-+.||..+..
T Consensus 348 ~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaq 397 (980)
T KOG0980|consen 348 QLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQ 397 (980)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555566666666665555555555555555555554433
No 141
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=92.55 E-value=41 Score=43.37 Aligned_cols=86 Identities=7% Similarity=0.096 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000924 827 TQAVKKLHREESEKLKRLLGQFKAA-DEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQ 905 (1222)
Q Consensus 827 lKELsKK~DEIkaEI~ELQeElkAL-~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aE 905 (1222)
+.++.|.-.+++..|..+.++++-+ .++|-+...-|.+-.+++...-..||..+..-+..... ++
T Consensus 672 ~eel~Ke~kElq~rL~~q~KkiDh~ERA~R~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~~~~--------------ae 737 (988)
T KOG2072|consen 672 IEELEKERKELQSRLQYQEKKIDHLERAKRLEEIPLIEKAYDERQEEDRELYEAREKQRIEAAI--------------AE 737 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH--------------HH
Confidence 4444555555555555555555533 36666777777666676666667888766554443333 45
Q ss_pred HHHHHHHHhCChHHHHHHHHh
Q 000924 906 VERVLELWNNNDEFRKEYVNS 926 (1222)
Q Consensus 906 VEkFMelWN~dkeFRkDYeKr 926 (1222)
-|.-|..|+.-.-|+.+|.+-
T Consensus 738 ~e~~vk~k~~l~rm~~d~~~f 758 (988)
T KOG2072|consen 738 RESAVKDKKRLSRMYDDRDKF 758 (988)
T ss_pred HHHHHHHHHHHHHHhhhHHHH
Confidence 577789999888888888764
No 142
>PRK11281 hypothetical protein; Provisional
Probab=92.47 E-value=46 Score=44.31 Aligned_cols=106 Identities=10% Similarity=0.195 Sum_probs=49.6
Q ss_pred CCChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000924 659 RYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQT---IRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1222)
Q Consensus 659 RPDDEeLKAKIdeLqKEIeKLnq~RdaI~eELka---lRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL 735 (1222)
.|+...++++|+++.+. +........+...++. .-.+.+....+..+++.+...+-..+.+-.++++.+++.....
T Consensus 35 ~p~~~~iq~~l~~~~~~-~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~ 113 (1113)
T PRK11281 35 LPTEADVQAQLDALNKQ-KLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEE 113 (1113)
T ss_pred CCCHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccc
Confidence 46777788888887662 2111111111111111 1122222233333333333333333333333344333311110
Q ss_pred --c--cCCCHHHHHHHHHHHHHHhhcCCCChHHH
Q 000924 736 --K--NAISVDDIDGSIRNMEHRIAHETLPLKEE 765 (1222)
Q Consensus 736 --R--nAkSVEEIDarIa~LE~RIQTgSLSLvEE 765 (1222)
. ...|..+|+.++.+++..++...-.|.+.
T Consensus 114 ~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~ 147 (1113)
T PRK11281 114 TRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEY 147 (1113)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12577889999998888777765555555
No 143
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.46 E-value=36 Score=42.50 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 702 EKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (1222)
Q Consensus 702 EQLKeLReE~KqlReer~EKIKEIk~LQeaLn 733 (1222)
.+|..+..++...+..+......++.++..+.
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~ 268 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKALQ 268 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666666666666555555666655553
No 144
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.33 E-value=29 Score=41.02 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHH
Q 000924 662 DENLREQIKAAQSKVDEKTRSRDAI 686 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq~RdaI 686 (1222)
...++.++..++.++..+...+..+
T Consensus 99 ~~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 99 KQLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888887776654
No 145
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=92.29 E-value=28 Score=40.77 Aligned_cols=117 Identities=16% Similarity=0.231 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHH-HhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 766 KQIIREIKQLKQRRE-QISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRL 844 (1222)
Q Consensus 766 KKLLKEIKQLKKsRK-kViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~EL 844 (1222)
|.+|.++.+-..+.+ +..-|++....++..+. ..++-+...+.|+..+.+++++++.+.--...+++..+..+-.+
T Consensus 207 k~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~---KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~l 283 (391)
T KOG1850|consen 207 KIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLA---KSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQL 283 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 445555555554443 33346655555555543 23445667788888888888888888777788888888777776
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCH
Q 000924 845 LGQFKA-------ADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDR 895 (1222)
Q Consensus 845 QeElkA-------L~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdv 895 (1222)
..+... +..+++.+-.=.++|+.+|.+.|. .++++.+++..
T Consensus 284 a~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~----------~~~~~e~~v~~ 331 (391)
T KOG1850|consen 284 AEEKTVRDKEYETLQKKIQRLEKLCRALQTERNELNK----------KLEDLEAQVSA 331 (391)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH----------HHHHHhcccch
Confidence 654332 223333333333444555555444 56677555443
No 146
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.24 E-value=41 Score=42.61 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 000924 763 KEEKQIIREIKQLKQRREQI 782 (1222)
Q Consensus 763 vEEKKLLKEIKQLKKsRKkV 782 (1222)
.+||++=+.+.+|...-..+
T Consensus 190 ~~eke~~~~~~ql~~~~q~~ 209 (716)
T KOG4593|consen 190 NEEKELDRQHKQLQEENQKI 209 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777665544
No 147
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.14 E-value=2.7 Score=47.83 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 833 LHREESEKLKRLLGQFKAADEIRQEAYKHWQSLK 866 (1222)
Q Consensus 833 K~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLR 866 (1222)
.++...-++...+++++.+..+.+-+.+++..||
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444333
No 148
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.12 E-value=14 Score=46.60 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=44.0
Q ss_pred HHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH--HHHHHH
Q 000924 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDD--IDGSIR 749 (1222)
Q Consensus 672 LqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEE--IDarIa 749 (1222)
+++.+..++..+..-..++..++.+|..+.+....|.++++...+.-....+.++.+...++...-..|.+| .-++++
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~ 642 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELE 642 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 344444455555555566666667777776666666666655555555555555554333322111134444 333455
Q ss_pred HHHHHhh
Q 000924 750 NMEHRIA 756 (1222)
Q Consensus 750 ~LE~RIQ 756 (1222)
.|..+++
T Consensus 643 ~~~~~l~ 649 (717)
T PF10168_consen 643 RMKDQLQ 649 (717)
T ss_pred HHHHHHH
Confidence 5555443
No 149
>PRK10869 recombination and repair protein; Provisional
Probab=91.75 E-value=17 Score=44.37 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhh
Q 000924 894 DREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLR 933 (1222)
Q Consensus 894 dveELeelC~aEVEkFMelWN~dkeFRkDYeKrnl~Sl~r 933 (1222)
+..+|+..+..--+.++.+=..-...|+.+-+....++..
T Consensus 342 ~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~ 381 (553)
T PRK10869 342 DLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITE 381 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666667777888887776666543
No 150
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.70 E-value=25 Score=40.70 Aligned_cols=27 Identities=15% Similarity=0.017 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 690 IQTIRASYKEYAEKLEAAISDERSARE 716 (1222)
Q Consensus 690 LkalRaERdELiEQLKeLReE~KqlRe 716 (1222)
+.-+..+..++..++.....++..|+.
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 151
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.70 E-value=22 Score=38.39 Aligned_cols=100 Identities=18% Similarity=0.339 Sum_probs=53.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHH
Q 000924 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDG 746 (1222)
Q Consensus 667 AKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDa 746 (1222)
+.|..|..+|..++..-......+..+..+-..|.+-|..+..+...++..+..-.+.-..|+ .++ .....++.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~----~~k--~rl~~~ek 100 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQ----NLK--ARLKELEK 100 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHH
Confidence 345555555555555444445555555555555555555555554444444433322222222 222 24456678
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHh
Q 000924 747 SIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI 782 (1222)
Q Consensus 747 rIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkV 782 (1222)
.|..|+|.-+. +.....+|.+.|..+
T Consensus 101 ~l~~Lk~e~ev----------L~qr~~kle~ErdeL 126 (201)
T PF13851_consen 101 ELKDLKWEHEV----------LEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 88888886653 445666777777655
No 152
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=91.61 E-value=25 Score=38.75 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000924 863 QSLKKQAYDKNQHFWKYKDDTKQANDL 889 (1222)
Q Consensus 863 keLRKERDEkNkeFYqnRr~i~KAREL 889 (1222)
..|..+........-+.+..+..|..+
T Consensus 230 ~~l~~~~~~~~~~L~~a~~~L~~a~~l 256 (264)
T PF06008_consen 230 QELSEQQNEVSETLKEAEDLLDQANDL 256 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444
No 153
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.49 E-value=45 Score=41.50 Aligned_cols=48 Identities=10% Similarity=0.219 Sum_probs=20.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 681 RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSV 728 (1222)
Q Consensus 681 q~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~L 728 (1222)
..|+++...+..+..+++.|...+-.+.-+.......+..+..+++.+
T Consensus 339 ~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l 386 (581)
T KOG0995|consen 339 LERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSL 386 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433334444444444444443
No 154
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.42 E-value=4 Score=46.50 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000924 806 MKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQ 885 (1222)
Q Consensus 806 IKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~K 885 (1222)
+..+.+++..+..+...+.+++.++.+...++..++..++.+...+.+...+.+...+.+.-++....+..- .+..
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~----sl~~ 120 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERD----SLKN 120 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 344455555555555555556666666666666777777777777776666666666666655554333211 1111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhhhcCCCCCCCC
Q 000924 886 ANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLG 944 (1222)
Q Consensus 886 ARELAakgdveELeelC~aEVEkFMelWN~dkeFRkDYeKrnl~Sl~rRqlT~DGR~rn 944 (1222)
.. .+..+++++-...=-=++.|+ | |.+-..+|=.|=.+|
T Consensus 121 q~------------~~~~~~L~~L~ktNv~n~~F~------I--~hdG~fGTINGlRLG 159 (314)
T PF04111_consen 121 QY------------EYASNQLDRLRKTNVYNDTFH------I--WHDGPFGTINGLRLG 159 (314)
T ss_dssp HH------------HHHHHHHHCHHT--TTTTT--------E--EEETTEEEETTEEE-
T ss_pred HH------------HHHHHHHHHHHhcCchhceee------E--eecCCeeeECCeeec
Confidence 11 223445555444434466774 2 224466666665555
No 155
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=91.35 E-value=1.8 Score=51.37 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHh
Q 000924 1092 AALRAQKEAEQKEKEREKRARKKE 1115 (1222)
Q Consensus 1092 A~~raqKEAEkKeKErEKKAKKK~ 1115 (1222)
+++|+++-|++|....++|+++++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~ 389 (429)
T PRK00247 366 RQERAAAMARARARRAAVKAKKKG 389 (429)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhcc
Confidence 445555555554444555565553
No 156
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.33 E-value=3.5 Score=44.74 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN 873 (1222)
Q Consensus 799 KEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkN 873 (1222)
...++.++..++.+++.++.+.+. ...++..++.+....+.+|.++++.|.++-..+-.++..|+.+.+...
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWNQ---RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666665554442 344555566666666666777677776666666666666666555443
No 157
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=91.22 E-value=2.3 Score=40.57 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 801 QIEEKMKFLRKEADSLRENVIKAEAAT 827 (1222)
Q Consensus 801 aIqEQIKaLKKEIDELRkKLkkLeaEl 827 (1222)
.+.++.+.+..+++.++.+.+.+..++
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I 59 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEI 59 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334444444444555444444443333
No 158
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=91.10 E-value=19 Score=38.18 Aligned_cols=89 Identities=19% Similarity=0.336 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--------------HH
Q 000924 802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD-EIRQEAYKHWQS--------------LK 866 (1222)
Q Consensus 802 IqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~-EKRDEAYeeIke--------------LR 866 (1222)
.......+++||.+++.++...-++.+.+..+.-..+..+.+....+.... +.+.+||++... ||
T Consensus 25 ~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr 104 (159)
T PF05384_consen 25 ARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLR 104 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666666666666666655554433 345556655544 55
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 000924 867 KQAYDKNQHFWKYKDDTKQANDLA 890 (1222)
Q Consensus 867 KERDEkNkeFYqnRr~i~KARELA 890 (1222)
..||.+....-+....+.+|..|+
T Consensus 105 ~rRD~LErrl~~l~~tierAE~l~ 128 (159)
T PF05384_consen 105 ERRDELERRLRNLEETIERAENLV 128 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555556666663
No 159
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.06 E-value=16 Score=39.41 Aligned_cols=27 Identities=15% Similarity=0.395 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 805 KMKFLRKEADSLRENVIKAEAATQAVK 831 (1222)
Q Consensus 805 QIKaLKKEIDELRkKLkkLeaElKELs 831 (1222)
++..|+..+..++..+...+..+.++.
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~~l~~~~ 97 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRERLEELR 97 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333333333
No 160
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=90.83 E-value=16 Score=40.07 Aligned_cols=161 Identities=13% Similarity=0.199 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHh
Q 000924 703 KLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI 782 (1222)
Q Consensus 703 QLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkV 782 (1222)
++-=|+.+++.....+..|..+|=.|+..|...+ .....-+..|..|.....+.++.|. ..-.|+.+.+..
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~--~~l~~~~~~~~~l~~~~~~K~~ELE---~ce~ELqr~~~E---- 81 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELR--AELRNKESQIQELQDSLRTKQLELE---VCENELQRKKNE---- 81 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHhhHhHH---HhHHHHHHHhCH----
Confidence 4455666777788888888888888888776655 2555556667666666655544332 111222221111
Q ss_pred hhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 783 SSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAE---AATQAVKKLHREESEKLKRLLGQFKAADEIRQEAY 859 (1222)
Q Consensus 783 iAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLe---aElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAY 859 (1222)
.+-+.+++..|..++..||..+..+. ...-.+ ...++.+..-..-......+...-+.+-
T Consensus 82 ----------------a~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l-~~~deak~~~~~~~~~~~~l~~e~erL~ 144 (202)
T PF06818_consen 82 ----------------AELLREKLGQLEAELAELREELACAGRLKRQCQLL-SESDEAKAQRQAGEDELGSLRREVERLR 144 (202)
T ss_pred ----------------HHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccc-cccchhHHhhccccccchhHHHHHHHHH
Confidence 11122233334444444444333320 000000 0111111100000122445555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000924 860 KHWQSLKKQAYDKNQHFWKYKDDTKQANDL 889 (1222)
Q Consensus 860 eeIkeLRKERDEkNkeFYqnRr~i~KAREL 889 (1222)
.++..+|..++.....|-+-|+.+..=|+-
T Consensus 145 aeL~~er~~~e~q~~~Fe~ER~~W~eEKek 174 (202)
T PF06818_consen 145 AELQRERQRREEQRSSFEQERRTWQEEKEK 174 (202)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888888888888888765554
No 161
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.78 E-value=46 Score=40.36 Aligned_cols=34 Identities=9% Similarity=0.273 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHH
Q 000924 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY 697 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalRaER 697 (1222)
.+..++..+.-.+.++.+.+..++.++..++.++
T Consensus 106 sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~ 139 (511)
T PF09787_consen 106 SLSSELAVLKIRLQELDQELRRLRRQLEELQNEK 139 (511)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566666666666666666666666665554333
No 162
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=90.58 E-value=49 Score=40.39 Aligned_cols=89 Identities=19% Similarity=0.288 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 767 QIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG 846 (1222)
Q Consensus 767 KLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQe 846 (1222)
+.+.||++-.+.--+. .+|..++.+|+.=.+++..||.++...-. ..++-|+.+-+.-..++-.|++
T Consensus 433 ry~~eiQqKnksvsqc-------lEmdk~LskKeeeverLQ~lkgelEkat~------SALdlLkrEKe~~EqefLslqe 499 (527)
T PF15066_consen 433 RYMTEIQQKNKSVSQC-------LEMDKTLSKKEEEVERLQQLKGELEKATT------SALDLLKREKETREQEFLSLQE 499 (527)
T ss_pred HHHHHHHHhhhHHHHH-------HHHHHHhhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777666663322 23344555665444566677766663221 1222333333333455666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 847 QFKAADEIRQEAYKHWQSLKKQAYD 871 (1222)
Q Consensus 847 ElkAL~EKRDEAYeeIkeLRKERDE 871 (1222)
+++.-.. +-.+++++|+-.+.+
T Consensus 500 EfQk~ek---enl~ERqkLKs~leK 521 (527)
T PF15066_consen 500 EFQKHEK---ENLEERQKLKSRLEK 521 (527)
T ss_pred HHHHHHH---hhHHHHHHHHHHHHH
Confidence 6554332 234455555554444
No 163
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=90.50 E-value=2.4 Score=52.52 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=10.2
Q ss_pred hcCCCCCCCCCCCCCC
Q 000924 935 LKTLDGRSLGPDEEAP 950 (1222)
Q Consensus 935 qlT~DGR~rnPDEkPp 950 (1222)
-..-||-.++|+++-.
T Consensus 133 ~e~~d~p~~~~~~eq~ 148 (811)
T KOG4364|consen 133 VENVDAPVLEDDSEQC 148 (811)
T ss_pred ccccCCcccCchhhhh
Confidence 3455777777776654
No 164
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=90.27 E-value=0.13 Score=62.38 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000924 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREE-SEKLKRLLGQFKAADEIRQEAYKHW-QSLKKQAYDKNQ 874 (1222)
Q Consensus 800 EaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEI-kaEI~ELQeElkAL~EKRDEAYeeI-keLRKERDEkNk 874 (1222)
.....++..|+.++..|...|+-...+++.--.....+ ...|..+..+++-|.+.+.+....+ ..+|.+..++++
T Consensus 224 ~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd 300 (619)
T PF03999_consen 224 EEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWD 300 (619)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33445566777777777777666655554221111111 1345555555555554444443332 344444444444
No 165
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=89.98 E-value=35 Score=37.67 Aligned_cols=79 Identities=20% Similarity=0.234 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000924 803 EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD 881 (1222)
Q Consensus 803 qEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr 881 (1222)
..++..|-.++..+...++.+...-..+..+.+....+|..+..+++.+.-.-.-+-.....|-+++|.+....+..+.
T Consensus 108 Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ 186 (205)
T KOG1003|consen 108 ESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKE 186 (205)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHH
Confidence 3455566666666667666666666666666666667777777766666544444445555666666665555444433
No 166
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.91 E-value=8.2 Score=42.70 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 799 KDQIEEKMKFLR---KEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN 873 (1222)
Q Consensus 799 KEaIqEQIKaLK---KEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkN 873 (1222)
+..|...+..+. +=|.+++++++.|..+.......+..|+.+|+.|..-++.+...|.+..+.+..|+.++..+.
T Consensus 17 k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk 94 (230)
T PF10146_consen 17 KNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK 94 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544 447888888888888888888888888888888888888888888888777776666544433
No 167
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=89.72 E-value=42 Score=38.24 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 844 LLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (1222)
Q Consensus 844 LQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYq 878 (1222)
...++..+-.....+|..+.+|+.-..+..+ ||+
T Consensus 289 ~~~~r~~~l~~L~~ay~~y~el~~~l~eG~~-FY~ 322 (342)
T cd08915 289 SLDPREEALQDLEASYKKYLELKENLNEGSK-FYN 322 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHH
Confidence 3444556666677777777777777777666 553
No 168
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.70 E-value=19 Score=37.33 Aligned_cols=64 Identities=25% Similarity=0.331 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 803 EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLK 866 (1222)
Q Consensus 803 qEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLR 866 (1222)
+.++..+.++++.+...+..+...+..+...+............+++.+.......+.++..|+
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555555555555555555
No 169
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=89.66 E-value=43 Score=40.46 Aligned_cols=94 Identities=13% Similarity=0.281 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000924 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRE 818 (1222)
Q Consensus 739 kSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRk 818 (1222)
.+++++..+.+.|.+ ||++++++++.|.+....+ ...+..+..+..
T Consensus 176 ~~~~~~~~e~~~l~~----------eE~~L~q~lk~le~~~~~l--------------------~~~l~e~~~~~~---- 221 (447)
T KOG2751|consen 176 VSEEDLLKELKNLKE----------EEERLLQQLEELEKEEAEL--------------------DHQLKELEFKAE---- 221 (447)
T ss_pred cchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH----
Confidence 467777776666653 7888888888888875554 112222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 819 NVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQA 869 (1222)
Q Consensus 819 KLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKER 869 (1222)
.+.++-..+.++|...+-++.+.+++++++..+|.=+-..++.||+.-
T Consensus 222 ---~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktN 269 (447)
T KOG2751|consen 222 ---RLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTN 269 (447)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 222334455667777778888889999999999998888888888753
No 170
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.64 E-value=58 Score=39.74 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHH
Q 000924 799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD---EIRQ----EAYKHWQSLKKQAYD 871 (1222)
Q Consensus 799 KEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~---EKRD----EAYeeIkeLRKERDE 871 (1222)
+.....+|+++.+-+...+..|-+.-.++.+|.|+.+-+...++--..=.+.+- .+.| .||.-+..|-.--.+
T Consensus 384 rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~e 463 (521)
T KOG1937|consen 384 RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCME 463 (521)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777777777666777777666666555554433222221 2222 333333333333333
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCHHHHH
Q 000924 872 KNQHFWKYKDDTKQANDLASKGDREALQ 899 (1222)
Q Consensus 872 kNkeFYqnRr~i~KARELAakgdveELe 899 (1222)
+....-..=+..+++++|..+=..+++.
T Consensus 464 i~E~i~~tg~~~revrdlE~qI~~E~~k 491 (521)
T KOG1937|consen 464 ILEMIRETGALKREVRDLESQIYVEEQK 491 (521)
T ss_pred HHHHHHHcchHHHHHHHHHHHHhHHHHH
Confidence 3333344445567788886555444443
No 171
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=89.64 E-value=42 Score=42.87 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 000924 713 SARESLKSKRQE 724 (1222)
Q Consensus 713 qlReer~EKIKE 724 (1222)
.+...+++|+.+
T Consensus 558 ~Lk~ei~kki~e 569 (762)
T PLN03229 558 KLKAEINKKFKE 569 (762)
T ss_pred hhhHHHHHHHHH
Confidence 345555555555
No 172
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.55 E-value=51 Score=42.08 Aligned_cols=46 Identities=9% Similarity=0.106 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000924 691 QTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (1222)
Q Consensus 691 kalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLR 736 (1222)
+.-..+=..|..++.+|..++++.|..+.....|.+.|......++
T Consensus 23 ~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~ 68 (717)
T PF09730_consen 23 QESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELR 68 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666777888888888888888888888777777766665554
No 173
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.50 E-value=12 Score=45.11 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000924 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY 879 (1222)
Q Consensus 800 EaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqn 879 (1222)
+...+....+..+.+++....+.++...+.+..++.+++.++..++++++...+.-..+.+..+.|+.++.+++...-..
T Consensus 350 en~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~ 429 (493)
T KOG0804|consen 350 ENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEA 429 (493)
T ss_pred HhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444555667778888888888888888888899999999999999999999888888888888888888876633221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHH
Q 000924 880 KDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFR 920 (1222)
Q Consensus 880 Rr~i~KARELAakgdveELeelC~aEVEkFMelWN~dkeFR 920 (1222)
+ .++| ..+.+|+ .|+--.|-..-+...|-
T Consensus 430 ~----~s~d----~~I~dLq----EQlrDlmf~le~qqklk 458 (493)
T KOG0804|consen 430 L----GSKD----EKITDLQ----EQLRDLMFFLEAQQKLK 458 (493)
T ss_pred H----HHHH----HHHHHHH----HHHHhHheehhhhhhhh
Confidence 1 1222 2355555 56777777776665554
No 174
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.29 E-value=38 Score=37.16 Aligned_cols=38 Identities=26% Similarity=0.220 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 809 LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG 846 (1222)
Q Consensus 809 LKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQe 846 (1222)
|-+++..|..+-.++..+++.+.+++.++..+-..|+.
T Consensus 100 L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~ 137 (193)
T PF14662_consen 100 LVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQR 137 (193)
T ss_pred HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHH
Confidence 33444444444444444444444444444444444433
No 175
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.17 E-value=74 Score=40.37 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 841 LKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1222)
Q Consensus 841 I~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNk 874 (1222)
|..|.+-.+.+.+++.+-..+++.|+.+.-+++.
T Consensus 228 l~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn 261 (660)
T KOG4302|consen 228 LDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWN 261 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666667777777776666544
No 176
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.06 E-value=6.1 Score=40.71 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 802 IEEKMKFLRKEADSLRENVIKAEAATQ 828 (1222)
Q Consensus 802 IqEQIKaLKKEIDELRkKLkkLeaElK 828 (1222)
+..+|..|+.++.+++..++.++.++.
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433333
No 177
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=88.72 E-value=41 Score=36.86 Aligned_cols=19 Identities=21% Similarity=0.653 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 000924 766 KQIIREIKQLKQRREQISS 784 (1222)
Q Consensus 766 KKLLKEIKQLKKsRKkViA 784 (1222)
+.+|.++..|+..|..+..
T Consensus 147 ~~ll~~l~~l~~eR~~~~~ 165 (296)
T PF13949_consen 147 RELLNKLEELKKEREELLE 165 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5789999999999987644
No 178
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.61 E-value=81 Score=40.07 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000924 699 EYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1222)
Q Consensus 699 ELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL 735 (1222)
-|+.++..|...+.++|...+++++++..++..+.++
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l 136 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKL 136 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888899999999999988888877665
No 179
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.57 E-value=6.1 Score=40.71 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=8.5
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 000924 760 LPLKEEKQIIREIKQLKQR 778 (1222)
Q Consensus 760 LSLvEEKKLLKEIKQLKKs 778 (1222)
++..+-..+=.+|.+|+..
T Consensus 69 ~s~eel~~ld~ei~~L~~e 87 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREE 87 (169)
T ss_pred CCchhHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 180
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=88.57 E-value=1e+02 Score=41.26 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHHHhhc
Q 000924 740 SVDDIDGSIRNMEHRIAH 757 (1222)
Q Consensus 740 SVEEIDarIa~LE~RIQT 757 (1222)
...+...++..++.+++.
T Consensus 145 ~~~~~~~~l~~i~~~L~~ 162 (1109)
T PRK10929 145 QQTEARRQLNEIERRLQT 162 (1109)
T ss_pred hHHHHHHHHHHHHHHHhC
Confidence 337777888888887777
No 181
>PF13514 AAA_27: AAA domain
Probab=88.54 E-value=97 Score=40.91 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=15.4
Q ss_pred hHHHHHHHHhhhh--hHhhhhcCCC---CCCCCCCCCCCc
Q 000924 917 DEFRKEYVNSNIR--STLRRLKTLD---GRSLGPDEEAPL 951 (1222)
Q Consensus 917 keFRkDYeKrnl~--Sl~rRqlT~D---GR~rnPDEkPpv 951 (1222)
..||.+|.-..+. |-.-+.+|.. +-+.++|..+|+
T Consensus 971 ~~~r~~~~p~vl~~As~~f~~LT~G~Y~~l~~d~d~~~~~ 1010 (1111)
T PF13514_consen 971 ERYREERQPPVLARASEYFSRLTGGRYSRLRVDEDGDKPV 1010 (1111)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhCCCCceeeeccccCccc
Confidence 3455555443322 2233344442 334566655543
No 182
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=88.44 E-value=44 Score=36.84 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 000924 866 KKQAYDKNQHFWKYKDDTKQANDL 889 (1222)
Q Consensus 866 RKERDEkNkeFYqnRr~i~KAREL 889 (1222)
.++...+....-.....+..|+.+
T Consensus 226 ~~k~~~l~~~~~~~~~~L~~a~~~ 249 (264)
T PF06008_consen 226 EKKKQELSEQQNEVSETLKEAEDL 249 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555555554
No 183
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=88.27 E-value=77 Score=39.42 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 809 LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1222)
Q Consensus 809 LKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNk 874 (1222)
.-++|+++...+..+-..+.+=...|..++..+..+.+.+..+..+..+..++++.||+.--+...
T Consensus 352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are 417 (570)
T COG4477 352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARE 417 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555566777888888888888888889999999999999986544333
No 184
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.15 E-value=80 Score=39.48 Aligned_cols=179 Identities=12% Similarity=0.155 Sum_probs=78.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCHH
Q 000924 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNA---ISVD 742 (1222)
Q Consensus 666 KAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnA---kSVE 742 (1222)
....+.++.+|..+...-.+...+.-....==-++.++...|..++..+....+.-+.||+.+++++++.+.. ....
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~ 86 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARD 86 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445555556655554444433332111111112333444455555555666666666777777777765410 0111
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHH----HHHHHHHHH
Q 000924 743 DIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFL----RKEADSLRE 818 (1222)
Q Consensus 743 EIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaL----KKEIDELRk 818 (1222)
.+ .+=|..+|- |-..|--++..|-.|+...++.+.... ..++..+........++.. -.+.--+|.
T Consensus 87 g~----e~EesLLqE---SaakE~~yl~kI~eleneLKq~r~el~---~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~ 156 (772)
T KOG0999|consen 87 GE----EREESLLQE---SAAKEEYYLQKILELENELKQLRQELT---NVQEENERLEKVHSDLKESNAAVEDQRRRLRD 156 (772)
T ss_pred ch----hhHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 11 111222222 234555667777666655555433111 1111111111111111111 111222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 819 NVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEI 854 (1222)
Q Consensus 819 KLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EK 854 (1222)
+|+.++-.-.-+-..|.++..+=..||++.-.|+.-
T Consensus 157 elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~s 192 (772)
T KOG0999|consen 157 ELKEYKFREARLLSEYSELEEENISLQKQVSNLRQS 192 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhh
Confidence 333332222234456777777777777766666543
No 185
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=88.14 E-value=73 Score=39.02 Aligned_cols=12 Identities=17% Similarity=0.122 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCC
Q 000924 937 TLDGRSLGPDEE 948 (1222)
Q Consensus 937 T~DGR~rnPDEk 948 (1222)
+-||+.+-||--
T Consensus 233 ~~~g~~~rPDvi 244 (475)
T PRK10361 233 NDARSRMQPDVI 244 (475)
T ss_pred CCCCCeeCCeEE
Confidence 446666556643
No 186
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=88.04 E-value=46 Score=36.53 Aligned_cols=18 Identities=22% Similarity=0.505 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHHhhc
Q 000924 740 SVDDIDGSIRNMEHRIAH 757 (1222)
Q Consensus 740 SVEEIDarIa~LE~RIQT 757 (1222)
.++.|..+|..|+..++-
T Consensus 93 ~l~~L~~ri~~L~~~i~e 110 (247)
T PF06705_consen 93 RLDSLNDRIEALEEEIQE 110 (247)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555554443
No 187
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=87.81 E-value=96 Score=40.02 Aligned_cols=89 Identities=9% Similarity=0.307 Sum_probs=51.1
Q ss_pred ccceeccCCcee--eecCCCCChHHHHHHHHHHHhHHHHHHHHHHHH------------------------------HHh
Q 000924 642 IGVEVVKQPFYF--LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAI------------------------------RDD 689 (1222)
Q Consensus 642 ~~~qv~K~~FyY--fVKvpRPDDEeLKAKIdeLqKEIeKLnq~RdaI------------------------------~eE 689 (1222)
+.+++..+.+-| |.-+|-|-....+..++.|..+-..+.+.-..+ ...
T Consensus 758 VvVqi~dRq~RYSrfPeiPLFGrAAREqrLE~L~~eRD~v~EqhA~~sFDvQK~QRlh~~FsqFvg~HLavAF~~dPE~~ 837 (1480)
T COG3096 758 VVVKIADRQWRYSRFPEIPLFGRAAREQRLESLHAERDVLSERHATLSFDVQKTQRLHQAFSRFIGSHLAVAFEADPEAE 837 (1480)
T ss_pred eEEEechhhhhhhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 344555555522 344555666677777776666554333221111 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 690 IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (1222)
Q Consensus 690 LkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQe 730 (1222)
+..++.+|+++...|.....+..++|..++.-...+..|..
T Consensus 838 ~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~Lnk 878 (1480)
T COG3096 838 IRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNR 878 (1480)
T ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888777777777777555444444433
No 188
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=87.58 E-value=20 Score=45.12 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAA 851 (1222)
Q Consensus 805 QIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL 851 (1222)
.++.+......++++++.+..++.++.+++.+++..+..++.+++..
T Consensus 228 ~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~ 274 (670)
T KOG0239|consen 228 NIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEA 274 (670)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444445455544444444444444443333
No 189
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.55 E-value=15 Score=37.29 Aligned_cols=77 Identities=23% Similarity=0.357 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 800 DQIEEKMKFLRKEADSLRENVIKAEAAT---QAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHF 876 (1222)
Q Consensus 800 EaIqEQIKaLKKEIDELRkKLkkLeaEl---KELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeF 876 (1222)
..++.++..|.++.+.++.++-.+-.+. .+..+++..++.++..|+.+++++=+..-+.-+...+||.-...+..-|
T Consensus 33 ~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 33 ASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554443333 3445666677777777777777777777777777777777666655533
No 190
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=87.45 E-value=1.6 Score=54.82 Aligned_cols=37 Identities=43% Similarity=0.559 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 000924 1074 AQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKE 1115 (1222)
Q Consensus 1074 ak~a~eRKkk~aeKaaa~A~~raqKEAEkKeKErEKKAKKK~ 1115 (1222)
.+++++|++++.+-++++-+.+++ |+||++|+.|+|.
T Consensus 242 r~eeEEer~~ee~E~~~eEak~kk-----Kekekek~er~Ka 278 (1064)
T KOG1144|consen 242 RREEEEERRREEEEAQEEEAKEKK-----KEKEKEKKERKKA 278 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhh
Confidence 344444444444444444233333 4445555555553
No 191
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=87.20 E-value=52 Score=36.30 Aligned_cols=66 Identities=18% Similarity=0.329 Sum_probs=37.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000924 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM 734 (1222)
Q Consensus 669 IdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnK 734 (1222)
|+-|..++++....-+.-..+|-.+|....++..+++....+...++..+..|--+++.....|..
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr 77 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQR 77 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHH
Confidence 444444443333333333444555566666666666666666666666666666666665555544
No 192
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.88 E-value=9.2 Score=40.47 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 803 EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQ 856 (1222)
Q Consensus 803 qEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRD 856 (1222)
..+|..|..++..++.++..+..++++..+-++.+++++..|+-++..+.++..
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~ 168 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLR 168 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777777777777666666666666666665555544433
No 193
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=86.87 E-value=5.5 Score=47.05 Aligned_cols=8 Identities=25% Similarity=0.032 Sum_probs=3.1
Q ss_pred HHhhhhhH
Q 000924 924 VNSNIRST 931 (1222)
Q Consensus 924 eKrnl~Sl 931 (1222)
.+.++.|+
T Consensus 12 ~~aiiiSv 19 (387)
T PRK09510 12 KRAIIISV 19 (387)
T ss_pred hhHHHHHH
Confidence 33333443
No 194
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.49 E-value=43 Score=36.71 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHH
Q 000924 808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ-----HFWKYKDD 882 (1222)
Q Consensus 808 aLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNk-----eFYqnRr~ 882 (1222)
.|..++..+..++..++...+.+.+.++..+.+|.+|+.++..+...+.+..--+...-+.+...-. ..-+.+.-
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~R 132 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQER 132 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH
Confidence 3344444444444444444555555555666666666666666666666666555555554444222 11122333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 000924 883 TKQANDLASKGDREALQHLCVNQVERVLELW 913 (1222)
Q Consensus 883 i~KARELAakgdveELeelC~aEVEkFMelW 913 (1222)
+..-+.+....++.-. |+|..+|
T Consensus 133 l~~L~~~l~~~dv~~~--------ek~r~vl 155 (251)
T PF11932_consen 133 LARLRAMLDDADVSLA--------EKFRRVL 155 (251)
T ss_pred HHHHHHhhhccCCCHH--------HHHHHHH
Confidence 4555666666664433 5566555
No 195
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=86.24 E-value=13 Score=39.66 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEA 858 (1222)
Q Consensus 808 aLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEA 858 (1222)
.+..|...++.++..+..+++.|.+++..+..++..+++.+.++-..+++|
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555555555555555555555555555554
No 196
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=86.16 E-value=74 Score=37.04 Aligned_cols=110 Identities=18% Similarity=0.299 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHH-----HHHHHHHHHHHhhh-hccchhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000924 744 IDGSIRNMEHRIAHETLPLKEEKQIIR-----EIKQLKQRREQISS-SIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLR 817 (1222)
Q Consensus 744 IDarIa~LE~RIQTgSLSLvEEKKLLK-----EIKQLKKsRKkViA-nAa~rAKIQESidQKEaIqEQIKaLKKEIDELR 817 (1222)
-..++..|+..+.+..-+|.| |-++- +.+|-..+.+.+.. |...++++...++..+.++++|-.|..|--=|+
T Consensus 156 aesK~nsLe~elh~trdaLrE-KtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLr 234 (305)
T PF14915_consen 156 AESKFNSLEIELHHTRDALRE-KTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLR 234 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888888777766654 44332 22333333332222 333466777777777777777766655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 818 ENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEI 854 (1222)
Q Consensus 818 kKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EK 854 (1222)
.+++.++.+...-.+-+-.++.....+..++++=.++
T Consensus 235 QQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ek 271 (305)
T PF14915_consen 235 QQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEK 271 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5555544433333333444444444444444443333
No 197
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=86.07 E-value=51 Score=38.84 Aligned_cols=54 Identities=11% Similarity=0.179 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQE 857 (1222)
Q Consensus 804 EQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDE 857 (1222)
+++..+..++..++.++.++..+.+.++.-+.+...+++.|.+++..+..++++
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444443
No 198
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=86.04 E-value=46 Score=37.98 Aligned_cols=84 Identities=7% Similarity=0.183 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000924 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (1222)
Q Consensus 801 aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnR 880 (1222)
.+...|+.+..++..++..+..+...-..|..|++.-+.++.-.++++++|...|=..+++...|..++.+.-..|+..=
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kf 245 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKF 245 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777777778888888888888888999999998888888888888888888777666544
Q ss_pred HHHH
Q 000924 881 DDTK 884 (1222)
Q Consensus 881 r~i~ 884 (1222)
|++.
T Consensus 246 RNl~ 249 (267)
T PF10234_consen 246 RNLD 249 (267)
T ss_pred HhHH
Confidence 4443
No 199
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.83 E-value=14 Score=39.55 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000924 813 ADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY 879 (1222)
Q Consensus 813 IDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqn 879 (1222)
...++..+..+..++..+.+++.++..+|..... -+.-...|.+..+++.+|+++...+...+-.|
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~-~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKK-GREESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555556655533 33444788888888888888888887766544
No 200
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=85.76 E-value=90 Score=37.65 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=30.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000924 687 RDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM 734 (1222)
Q Consensus 687 ~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnK 734 (1222)
..++...+.+|..-+.++...+.+.+..+..+..-.+++-..+..|..
T Consensus 94 ~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar 141 (499)
T COG4372 94 QGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELAR 141 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777778777777777777666665555555444443
No 201
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.56 E-value=9.5 Score=42.15 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 813 ADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAY 870 (1222)
Q Consensus 813 IDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERD 870 (1222)
.+.+.+++..+++++++..++++..+.+..++.++.+.+..+-|.+.++-..||++..
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3333333333333444444444444444455555555555555555555555555543
No 202
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=85.40 E-value=7.5 Score=46.51 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 000924 860 KHWQSLKKQA 869 (1222)
Q Consensus 860 eeIkeLRKER 869 (1222)
.+..+|+++.
T Consensus 89 qe~~~LyKe~ 98 (429)
T PRK00247 89 QKQKDLNKEY 98 (429)
T ss_pred HHHHHHHHHc
Confidence 3444444433
No 203
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.39 E-value=60 Score=35.25 Aligned_cols=17 Identities=24% Similarity=0.392 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhHHHHHH
Q 000924 664 NLREQIKAAQSKVDEKT 680 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLn 680 (1222)
.|+..|..++.+++.+.
T Consensus 16 ~L~n~l~elq~~l~~l~ 32 (194)
T PF15619_consen 16 ELQNELAELQRKLQELR 32 (194)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555443
No 204
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.21 E-value=70 Score=39.85 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHh---hcCCCChHHHHHHHHHHHHHHHHH
Q 000924 740 SVDDIDGSIRNMEHRI---AHETLPLKEEKQIIREIKQLKQRR 779 (1222)
Q Consensus 740 SVEEIDarIa~LE~RI---QTgSLSLvEEKKLLKEIKQLKKsR 779 (1222)
+..++-+++..|+|++ ++-.+...|+-+|..+++.|-..-
T Consensus 179 ~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~e 221 (557)
T COG0497 179 KERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSE 221 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHH
Confidence 4445556666666664 345566677777777766665553
No 205
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.00 E-value=40 Score=35.05 Aligned_cols=11 Identities=36% Similarity=0.489 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 000924 808 FLRKEADSLRE 818 (1222)
Q Consensus 808 aLKKEIDELRk 818 (1222)
.+..++..++.
T Consensus 106 ~~~~~l~~~~~ 116 (191)
T PF04156_consen 106 ELESELEKLKE 116 (191)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 206
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=84.68 E-value=69 Score=35.34 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 000924 715 RESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIR 749 (1222)
Q Consensus 715 Reer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa 749 (1222)
...+...+.+.+.+..-|+.+- +|..++.++-.
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~E--~sfsdl~~rye 100 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSLE--KSFSDLHKRYE 100 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH--hhHHHHHHHHH
Confidence 3344455555555555554442 34444444433
No 207
>PLN02939 transferase, transferring glycosyl groups
Probab=84.44 E-value=1.6e+02 Score=39.23 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERS 713 (1222)
Q Consensus 661 DDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~Kq 713 (1222)
-.+.+---|..+++-|--+++.|-.....++++..++..|+.+++-|.-++.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 129 QLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred cHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 35567778888999999999999999999999999999999999988766544
No 208
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=84.24 E-value=5.3 Score=38.20 Aligned_cols=64 Identities=13% Similarity=0.263 Sum_probs=50.7
Q ss_pred HHHHHHHHH-------HHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 663 ENLREQIKA-------AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID 726 (1222)
Q Consensus 663 EeLKAKIde-------LqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk 726 (1222)
+.|.+||.. |+-+|+++++....+..+.+.++..|.+|..+...|+.++..|...+...+..|+
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455566554 4668889999999999999999999999999999999998888877665554443
No 209
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.16 E-value=11 Score=42.17 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1222)
Q Consensus 810 KKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDE 871 (1222)
+.+++++.++...+..++.++..+|++.+..|..|..++..|.+++++.-.+.-.|++..++
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 33344444433333334555555555555666666555555555555555555555555444
No 210
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=83.95 E-value=0.44 Score=44.95 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=20.6
Q ss_pred hhhhhcccCCCCchHHHHHHHHHHHHHHHhhc
Q 000924 1177 LPLRNRGKRRVPSWMWVLIIALVVFALFLLGN 1208 (1222)
Q Consensus 1177 kaI~nRkKr~~~yWmW~~~AAlvVlaLfvlGy 1208 (1222)
+.|++|.||| +.|-|++++++++++++++++
T Consensus 2 k~i~kK~K~k-~~l~~~~isi~~~lvi~~i~~ 32 (96)
T PF13800_consen 2 KKILKKAKRK-SRLRTVVISIISALVIFIISF 32 (96)
T ss_pred chHHHHHHHH-HHHHHHHHHHhhhhhhHHHHH
Confidence 5678888875 888877666555555555444
No 211
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=83.76 E-value=45 Score=38.46 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 807 KFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAY 870 (1222)
Q Consensus 807 KaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERD 870 (1222)
..|+.|...|...++.+....+.|.-.+.--...+.-|..++...+.....+-.+++-++.++.
T Consensus 63 s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444444444333333344455555555555544444444444444443
No 212
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=83.73 E-value=3.8 Score=46.57 Aligned_cols=12 Identities=42% Similarity=0.595 Sum_probs=4.7
Q ss_pred HHHHhhhHHHHH
Q 000924 1049 KAEEKRKEEATA 1060 (1222)
Q Consensus 1049 k~~~~~~e~~~a 1060 (1222)
|+...|.++.++
T Consensus 259 K~~k~R~~~~~~ 270 (321)
T PF07946_consen 259 KAKKNREEEEEK 270 (321)
T ss_pred HHHHHHHHHHHH
Confidence 333334443333
No 213
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.59 E-value=12 Score=41.29 Aligned_cols=80 Identities=21% Similarity=0.328 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 766 KQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLL 845 (1222)
Q Consensus 766 KKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQ 845 (1222)
+++++++.+|++.-+.-.. .-.+.+...+.++.|+.++....++++.+.....++.|+.+.++.+++.|.
T Consensus 130 ~~~~~~~~~lk~~~~~~~~----------~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSK----------LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHHHHHHHHhhhcccc----------hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 7778888887777443311 011223344455566666666666666666666677777766666666666
Q ss_pred HHHHHHHHHH
Q 000924 846 GQFKAADEIR 855 (1222)
Q Consensus 846 eElkAL~EKR 855 (1222)
++...+.++.
T Consensus 200 ee~~~Lq~~i 209 (216)
T KOG1962|consen 200 EEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHH
Confidence 6655555543
No 214
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=83.56 E-value=1.6e+02 Score=38.70 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 000924 1091 RAALRAQKEAEQKEKEREKRAR 1112 (1222)
Q Consensus 1091 ~A~~raqKEAEkKeKErEKKAK 1112 (1222)
++++|.--.-++.++.++-|..
T Consensus 725 ed~F~e~A~~~qq~~q~~srl~ 746 (984)
T COG4717 725 EDAFREAAREEQQLTQRESRLE 746 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555556666655544
No 215
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=83.49 E-value=74 Score=34.75 Aligned_cols=34 Identities=15% Similarity=0.347 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 000924 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREI 772 (1222)
Q Consensus 739 kSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEI 772 (1222)
.|.++|..+|......++.-.-.|......|..|
T Consensus 78 ~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~ 111 (240)
T PF12795_consen 78 LSLEELEQRLSQEQAQLQELQEQLQQENSQLIEI 111 (240)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888877776665444444444433333
No 216
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.34 E-value=4.7 Score=45.37 Aligned_cols=10 Identities=30% Similarity=0.531 Sum_probs=5.4
Q ss_pred CChhhhhccc
Q 000924 1175 IPLPLRNRGK 1184 (1222)
Q Consensus 1175 lPkaI~nRkK 1184 (1222)
|.-.|--|||
T Consensus 244 ltGVmDDRGK 253 (299)
T KOG3054|consen 244 LTGVMDDRGK 253 (299)
T ss_pred heeeecCCCc
Confidence 4444555666
No 217
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=83.32 E-value=93 Score=35.81 Aligned_cols=19 Identities=16% Similarity=0.625 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 000924 766 KQIIREIKQLKQRREQISS 784 (1222)
Q Consensus 766 KKLLKEIKQLKKsRKkViA 784 (1222)
+.+|.++..|+..|..+..
T Consensus 194 r~ll~kl~~lk~eR~~l~~ 212 (337)
T cd09234 194 KRILNKVNEMRKQRRSLEQ 212 (337)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5577788888888876644
No 218
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=83.28 E-value=15 Score=42.06 Aligned_cols=65 Identities=31% Similarity=0.439 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 000924 708 ISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISS 784 (1222)
Q Consensus 708 ReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViA 784 (1222)
+.++|.....+.+.--||..|+..|.+|+ ++=|+.+-.+.|.++ .|+ .+=+||+||++--+.+.+
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMr----EDWIEEECHRVEAQL-----ALK---EARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMR----EDWIEEECHRVEAQL-----ALK---EARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHh
Confidence 33444444455555668888888898887 344555555666554 343 445688888877665543
No 219
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=82.96 E-value=7.5 Score=50.74 Aligned_cols=9 Identities=22% Similarity=0.434 Sum_probs=4.6
Q ss_pred Chhhhhccc
Q 000924 1176 PLPLRNRGK 1184 (1222)
Q Consensus 1176 PkaI~nRkK 1184 (1222)
|-+..+||+
T Consensus 679 ~~~~~~~~~ 687 (1021)
T PTZ00266 679 PYAYDSRKA 687 (1021)
T ss_pred hhhhccccc
Confidence 344555554
No 220
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=82.89 E-value=6.8 Score=49.48 Aligned_cols=74 Identities=34% Similarity=0.430 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHhhh
Q 000924 1042 EEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKE-KEREKRARKKEKR 1117 (1222)
Q Consensus 1042 ee~e~~rk~~~~~~e~~~ak~kE~kr~Ee~~Kak~a~eRKkk~aeKaaa~A~~raqKEAEkKe-KErEKKAKKK~~~ 1117 (1222)
|++|+.|.+++..+.-++.+...+|-+||++|++++.+|. .+-..+++++..+.+|+...- -|+|++.+--+-|
T Consensus 941 Eaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~--l~~e~q~qla~e~eee~k~q~~~Eqer~D~~la~R 1015 (1259)
T KOG0163|consen 941 EAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERR--LALELQEQLAKEAEEEAKRQNQLEQERRDHELALR 1015 (1259)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444444433333332333333344455555554444432 222222222333333333332 3666776655544
No 221
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=82.74 E-value=81 Score=34.66 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHHH
Q 000924 896 EALQHLCVNQVERVLELWNNNDEFR 920 (1222)
Q Consensus 896 eELeelC~aEVEkFMelWN~dkeFR 920 (1222)
..++.+...|+..+-.-.+--..=|
T Consensus 196 e~f~~~v~~Ei~~lk~~l~~e~~~R 220 (247)
T PF06705_consen 196 EQFQNFVLEEIAALKNALALESQER 220 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333
No 222
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.68 E-value=1.2e+02 Score=36.79 Aligned_cols=29 Identities=10% Similarity=0.252 Sum_probs=14.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 688 DDIQTIRASYKEYAEKLEAAISDERSARE 716 (1222)
Q Consensus 688 eELkalRaERdELiEQLKeLReE~KqlRe 716 (1222)
.+++.+-..-.+|+.++..+..+...++.
T Consensus 173 ee~kqlEe~ieeL~qsl~kd~~~~~~l~~ 201 (446)
T KOG4438|consen 173 EEVKQLEENIEELNQSLLKDFNQQMSLLA 201 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566666665555444433
No 223
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=82.63 E-value=1.3e+02 Score=36.79 Aligned_cols=41 Identities=12% Similarity=0.318 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000924 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS 709 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLRe 709 (1222)
.+.|-+.|.-+ .++-..+..++..++..|.-+.+.-+.|+.
T Consensus 45 ~e~l~~rv~sl-------sq~Nkvlk~elet~k~kcki~qeenr~l~~ 85 (552)
T KOG2129|consen 45 GESLGARVSSL-------SQRNKVLKGELETLKGKCKIMQEENRPLLL 85 (552)
T ss_pred HHHHHHHHHHH-------HhhhhhhhhhHHhhhhHHHHHHhcCchhhh
Confidence 44555555544 444445667777777777777766555544
No 224
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=82.08 E-value=34 Score=41.16 Aligned_cols=71 Identities=15% Similarity=0.264 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKR-------LLGQFKAADEIRQEAYKHWQSLKKQAYDK 872 (1222)
Q Consensus 802 IqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~E-------LQeElkAL~EKRDEAYeeIkeLRKERDEk 872 (1222)
+..|...++++.+.+++++...+.++..|+++...++++... +..+...+...|-....++.+|+++.-+.
T Consensus 32 ~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~ 109 (459)
T KOG0288|consen 32 LSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEF 109 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334444455555555555555555555554444444433322 22223333344455566666666665553
No 225
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=82.00 E-value=0.43 Score=60.35 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000924 829 AVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (1222)
Q Consensus 829 ELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnR 880 (1222)
.+..++-.++..+.++...+..+......+-.++..|..+.+.....++...
T Consensus 409 ~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLe 460 (859)
T PF01576_consen 409 ELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELE 460 (859)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHH
Confidence 3333333344444444444444444444555555555555555555544433
No 226
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=81.93 E-value=9.7 Score=36.42 Aligned_cols=63 Identities=16% Similarity=0.332 Sum_probs=33.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRA---SYKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (1222)
Q Consensus 665 LKAKIdeLqKEIeKLnq~RdaI~eELkalRa---ERdELiEQLKeLReE~KqlReer~EKIKEIk~ 727 (1222)
+..+...+..+++.++..|+.+..++..++. .+.+|..+.+.++.+++.+...+...-.++..
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566666666655555433 35555555555555555555544444444443
No 227
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=81.91 E-value=88 Score=34.54 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhc
Q 000924 714 ARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAH 757 (1222)
Q Consensus 714 lReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQT 757 (1222)
.+..+..+-.+...|+..+..+. .+..+...-|..+|..|+.
T Consensus 14 ~~~e~~~~E~e~~~l~~k~~e~~--~~~~~m~~i~~e~Ek~i~~ 55 (207)
T PF05010_consen 14 VQEEVAEKEEEEQELKKKYEELH--KENQEMRKIMEEYEKTIAQ 55 (207)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHH
Confidence 33333333344555555555544 4566666666666666554
No 228
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=81.83 E-value=83 Score=34.17 Aligned_cols=108 Identities=8% Similarity=0.084 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 000924 813 ADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD-EIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLAS 891 (1222)
Q Consensus 813 IDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~-EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAa 891 (1222)
+..+.+........++...++|+..-.++..+..+.+.+. ...+++-.++.............|..+...++..
T Consensus 109 ~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~----- 183 (236)
T cd07651 109 MEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALREL----- 183 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3444444444444555666666666666665554433222 2334444444444444444444444444433333
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHh
Q 000924 892 KGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTL 932 (1222)
Q Consensus 892 kgdveELeelC~aEVEkFMelWN~dkeFRkDYeKrnl~Sl~ 932 (1222)
...+..+|-.++..+-.-.+.|=.+.|.++++..
T Consensus 184 -------~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a 217 (236)
T cd07651 184 -------NEIWNREWKAALDDFQDLEEERIQFLKSNCWTFA 217 (236)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677777777777778888888888877654
No 229
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=81.74 E-value=0.45 Score=58.73 Aligned_cols=40 Identities=15% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000924 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEK 703 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQ 703 (1222)
.++++++.++.++.++...|+.+...+..+..+-.+|..+
T Consensus 243 ~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~ 282 (713)
T PF05622_consen 243 DLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQE 282 (713)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666555555555444444333333333333
No 230
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=81.63 E-value=8.8 Score=50.18 Aligned_cols=6 Identities=17% Similarity=0.562 Sum_probs=2.8
Q ss_pred HHHHhh
Q 000924 508 CKEVLE 513 (1222)
Q Consensus 508 ~~~~~~ 513 (1222)
|.++|.
T Consensus 124 a~QIL~ 129 (1021)
T PTZ00266 124 TRQLLH 129 (1021)
T ss_pred HHHHHH
Confidence 445544
No 231
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=81.43 E-value=18 Score=41.65 Aligned_cols=99 Identities=12% Similarity=0.225 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Q 000924 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDD 743 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEE 743 (1222)
.|+..+.+++...++-=-.-.+|.++...+.=+-+-|...|..+.+.+-+++..+.+|+++++.++..+..|+ .-..+
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~--~e~~~ 158 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLR--EELDE 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 5566666666555544444555666666666666666677777777777777777788888887777777665 36677
Q ss_pred HHHHHHHHHHHhhcCCCChHH
Q 000924 744 IDGSIRNMEHRIAHETLPLKE 764 (1222)
Q Consensus 744 IDarIa~LE~RIQTgSLSLvE 764 (1222)
|...|...+..|+--.|=|..
T Consensus 159 Lre~L~~rdeli~khGlVlv~ 179 (302)
T PF09738_consen 159 LREQLKQRDELIEKHGLVLVP 179 (302)
T ss_pred HHHHHHHHHHHHHHCCeeeCC
Confidence 777888777777665555544
No 232
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=81.34 E-value=0.47 Score=60.03 Aligned_cols=49 Identities=18% Similarity=0.374 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK 849 (1222)
Q Consensus 801 aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElk 849 (1222)
.+..++..+..+++.|+..+..-......+.+.+..++.+|..+..++.
T Consensus 261 ~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e 309 (859)
T PF01576_consen 261 ALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYE 309 (859)
T ss_dssp -------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344444555555555555444433344444444444444444444333
No 233
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.19 E-value=13 Score=41.71 Aligned_cols=76 Identities=13% Similarity=0.241 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q 000924 678 EKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRI 755 (1222)
Q Consensus 678 KLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RI 755 (1222)
.++..+..+..+++...++..+|+.++..+..++...+..+.....+.-.|...+.++. .-+..|..+...|+..+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~--~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP--GEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch--hHHHHHHHHHHHhcccc
Confidence 45566666777777777777777777777777666666666655555555555554443 35666777777776553
No 234
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=80.96 E-value=1.1e+02 Score=35.20 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 000924 766 KQIIREIKQLKQRREQISS 784 (1222)
Q Consensus 766 KKLLKEIKQLKKsRKkViA 784 (1222)
+.+|.++..|+..|..+..
T Consensus 194 r~~l~~l~~lk~eR~~~~~ 212 (339)
T cd09235 194 RQLMEQVETIKAEREVIES 212 (339)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887633
No 235
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=80.82 E-value=1.2e+02 Score=35.47 Aligned_cols=17 Identities=24% Similarity=0.696 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000924 766 KQIIREIKQLKQRREQI 782 (1222)
Q Consensus 766 KKLLKEIKQLKKsRKkV 782 (1222)
..+++.|.+|++.++.+
T Consensus 80 N~LlKkl~~l~keKe~L 96 (310)
T PF09755_consen 80 NTLLKKLQQLKKEKETL 96 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36889999999998877
No 236
>PRK10698 phage shock protein PspA; Provisional
Probab=80.54 E-value=21 Score=39.12 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHhhcC
Q 000924 740 SVDDIDGSIRNMEHRIAHE 758 (1222)
Q Consensus 740 SVEEIDarIa~LE~RIQTg 758 (1222)
-.+.++.+|..||.+.+..
T Consensus 167 ~f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 167 RFESFERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHHHHHHhHh
Confidence 3455778888888888764
No 237
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=80.54 E-value=98 Score=35.35 Aligned_cols=134 Identities=10% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HHhhhhccchhHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 766 KQIIREIKQLKQRR-EQISSSIGEHDEVQLAFDQKDQI-EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKR 843 (1222)
Q Consensus 766 KKLLKEIKQLKKsR-KkViAnAa~rAKIQESidQKEaI-qEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~E 843 (1222)
+.++++|...+.+= ..|.........+..++.-.+.. ..++..++.++.+..++... .+..|...+++++++|..
T Consensus 23 ~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~---~l~~Lq~ql~~l~akI~k 99 (258)
T PF15397_consen 23 KELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEES---KLSKLQQQLEQLDAKIQK 99 (258)
T ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 000924 844 LLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELW 913 (1222)
Q Consensus 844 LQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMelW 913 (1222)
.++++..|.--+|.-|--. .-..++..+.+..+++-. +-+..+|.+.|..+...|-..|
T Consensus 100 ~~~el~~L~TYkD~EYPvK----------~vqIa~L~rqlq~lk~~q-qdEldel~e~~~~el~~l~~~~ 158 (258)
T PF15397_consen 100 TQEELNFLSTYKDHEYPVK----------AVQIANLVRQLQQLKDSQ-QDELDELNEMRQMELASLSRKI 158 (258)
T ss_pred HHHHHHHHHHHhhhhhhHH----------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
No 238
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.50 E-value=63 Score=35.48 Aligned_cols=70 Identities=9% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 795 AFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQS 864 (1222)
Q Consensus 795 SidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIke 864 (1222)
..+++..+..++..+.++++.++...+.+...+....+++.+++.+|..+..-.+.+.-.....+..+..
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666666666666666666666666666666666666665555555554444444444
No 239
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=80.23 E-value=35 Score=36.21 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1222)
Q Consensus 808 aLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNk 874 (1222)
.....|..++..+..+..++..+...+.+....+..+++++.++.-.-..+=+++..|.++..++-+
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444444444444444444443
No 240
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.16 E-value=27 Score=32.69 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQ 723 (1222)
Q Consensus 663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIK 723 (1222)
+.|..||..|-.-|.-++.....+..+-..+..++..|..+...|+.++.++..-+...+.
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566555555555555555555555555555555555555555555555444444333
No 241
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=80.05 E-value=7.2 Score=49.49 Aligned_cols=6 Identities=50% Similarity=0.473 Sum_probs=2.3
Q ss_pred HHHHHH
Q 000924 1095 RAQKEA 1100 (1222)
Q Consensus 1095 raqKEA 1100 (1222)
+.||++
T Consensus 285 akQK~~ 290 (1064)
T KOG1144|consen 285 AKQKEE 290 (1064)
T ss_pred HhhHHH
Confidence 334433
No 242
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=79.96 E-value=68 Score=38.80 Aligned_cols=50 Identities=12% Similarity=0.268 Sum_probs=25.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000924 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1222)
Q Consensus 686 I~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL 735 (1222)
++.++...-.+...+++|+-.++++.+.++..+..+-.+|..||.....+
T Consensus 18 ~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 18 LNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQL 67 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333444444555555555555555555555555555555544433
No 243
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.30 E-value=70 Score=40.25 Aligned_cols=16 Identities=25% Similarity=0.220 Sum_probs=10.3
Q ss_pred HHHHHHHhHHHHHHHH
Q 000924 682 SRDAIRDDIQTIRASY 697 (1222)
Q Consensus 682 ~RdaI~eELkalRaER 697 (1222)
.|++|-+++++...=+
T Consensus 343 ~RDALAAA~kAY~~yk 358 (652)
T COG2433 343 ERDALAAAYKAYLAYK 358 (652)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5777777776655433
No 244
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=79.26 E-value=15 Score=43.52 Aligned_cols=8 Identities=13% Similarity=-0.018 Sum_probs=3.0
Q ss_pred HHHhhhhh
Q 000924 923 YVNSNIRS 930 (1222)
Q Consensus 923 YeKrnl~S 930 (1222)
|...+.+.
T Consensus 190 ~~ev~~P~ 197 (425)
T PRK05431 190 YTEVIPPY 197 (425)
T ss_pred CEEEeccc
Confidence 43333333
No 245
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=78.52 E-value=45 Score=35.51 Aligned_cols=56 Identities=13% Similarity=0.266 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 809 LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQS 864 (1222)
Q Consensus 809 LKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIke 864 (1222)
+++++.-+|++|+...-+++.+..-+..-..++....+.+++.+....-+...+.+
T Consensus 82 ~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~e 137 (159)
T PF04949_consen 82 MRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLME 137 (159)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433333333333333333333
No 246
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=78.39 E-value=60 Score=30.46 Aligned_cols=88 Identities=14% Similarity=0.171 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q 000924 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK-AADEIRQEAYKHWQSL--------KKQAYDKNQH 875 (1222)
Q Consensus 805 QIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElk-AL~EKRDEAYeeIkeL--------RKERDEkNke 875 (1222)
.+..++..+..+...+..+......+...++..+..|......+. .|.+.++.+...+... ..+...+...
T Consensus 8 ~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~ 87 (127)
T smart00502 8 LLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQK 87 (127)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444333322 3333344444444333 3333334444
Q ss_pred HHHhHHHHHHHHHHHhc
Q 000924 876 FWKYKDDTKQANDLASK 892 (1222)
Q Consensus 876 FYqnRr~i~KARELAak 892 (1222)
.-..+..+.-+..+...
T Consensus 88 l~~l~~~~~~~e~~l~~ 104 (127)
T smart00502 88 QEKLSHAINFTEEALNS 104 (127)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 44444444444444444
No 247
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=78.33 E-value=91 Score=32.55 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 816 LRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1222)
Q Consensus 816 LRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDE 871 (1222)
+|.++..+..+...+...+......+..+.+++..+...|+++......|+.+..-
T Consensus 82 ~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~ 137 (177)
T PF13870_consen 82 VKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGL 137 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333333334444444444555666666666666666777777777776665543
No 248
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=78.32 E-value=1.4e+02 Score=34.58 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 806 MKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG 846 (1222)
Q Consensus 806 IKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQe 846 (1222)
|+.++.++..+..++......+.++..++.++.+.|..|+.
T Consensus 216 V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~ 256 (344)
T PF12777_consen 216 VEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQK 256 (344)
T ss_dssp CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333333333333333
No 249
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=78.09 E-value=2.5e+02 Score=37.55 Aligned_cols=114 Identities=12% Similarity=0.207 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000924 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY--KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN 737 (1222)
Q Consensus 660 PDDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaER--dELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRn 737 (1222)
.|.+-++.+..+|...-.-+-+...-+.++|+.+|++= -.+-.++=.+.+++..++..+.--+..+..|......|..
T Consensus 257 mDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 257 MDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV 336 (1195)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34444566666665554444444555555566555443 3333444444444444444433333333333333222211
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000924 738 AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQR 778 (1222)
Q Consensus 738 AkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKs 778 (1222)
. -+.|+. .++-..-|....-.+.+-+..|-.+|...
T Consensus 337 q--~eqL~~---~~ellq~~se~~E~en~Sl~~e~eqLts~ 372 (1195)
T KOG4643|consen 337 Q--KEQLDG---QMELLQIFSENEELENESLQVENEQLTSD 372 (1195)
T ss_pred H--HHHhhh---hhhHhhhhhcchhhhhhhHHHHHHHhhhH
Confidence 0 011111 12222223344445566666666666663
No 250
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=78.09 E-value=71 Score=35.95 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhhhc
Q 000924 771 EIKQLKQRREQISSSI 786 (1222)
Q Consensus 771 EIKQLKKsRKkViAnA 786 (1222)
||+.|+++-+-+.+++
T Consensus 44 e~~eLk~qnkli~K~l 59 (230)
T PF03904_consen 44 EIQELKRQNKLIIKYL 59 (230)
T ss_pred HHHHHHHhhHHHHHHH
Confidence 8888888877665543
No 251
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.96 E-value=26 Score=43.71 Aligned_cols=98 Identities=8% Similarity=0.277 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhc
Q 000924 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDER---SARESLKSKRQEIDSVQSRINMMK 736 (1222)
Q Consensus 660 PDDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~K---qlReer~EKIKEIk~LQeaLnKLR 736 (1222)
.+...+...|..+...++++......|...+..++.+-..|.++|..++.+.+ ..+..+..+..+|..|+..|...
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~- 493 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEK- 493 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-
Confidence 34445566666666666666666666666666666555555555555544432 11112222333333444333222
Q ss_pred cCCCHHHHHHHHHHHH--HHhhcCC
Q 000924 737 NAISVDDIDGSIRNME--HRIAHET 759 (1222)
Q Consensus 737 nAkSVEEIDarIa~LE--~RIQTgS 759 (1222)
.+-+++|..++.+|. |.|+++.
T Consensus 494 -~~~ve~L~~~l~~l~k~~~lE~sG 517 (652)
T COG2433 494 -KKRVEELERKLAELRKMRKLELSG 517 (652)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhhcC
Confidence 246666666666666 5555543
No 252
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=77.68 E-value=2.3e+02 Score=36.93 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCCChH-HHHHHHHHHHHHHHHH
Q 000924 713 SARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLK-EEKQIIREIKQLKQRR 779 (1222)
Q Consensus 713 qlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSLSLv-EEKKLLKEIKQLKKsR 779 (1222)
.++..++....+|+.|-+.| |+. -.+-.+++..+..+..-+++-+-.|. .|++.+.+.+.|++.-
T Consensus 865 e~~~~~~~~~~~id~lv~~I-K~~-~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~q 930 (1259)
T KOG0163|consen 865 EIISGANSTYRQIDDLVKKI-KMP-RITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQ 930 (1259)
T ss_pred HHHhhhhhHHHHHHHHHHHh-ccc-ccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34444445555555553333 111 13566666666666665555555555 5666666666655553
No 253
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=77.52 E-value=19 Score=42.59 Aligned_cols=6 Identities=17% Similarity=0.346 Sum_probs=2.1
Q ss_pred HHHHHH
Q 000924 771 EIKQLK 776 (1222)
Q Consensus 771 EIKQLK 776 (1222)
+|-.|.
T Consensus 31 ~i~~ld 36 (418)
T TIGR00414 31 KLIALD 36 (418)
T ss_pred HHHHHH
Confidence 333333
No 254
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=76.92 E-value=69 Score=36.62 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1222)
Q Consensus 801 aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNk 874 (1222)
.+..+|+-.+.|++-.++.+..+...+=+.- ++...|..+++.+++.=-..|..+.-|..+++..+.
T Consensus 194 ~Le~KIekkk~ELER~qKRL~sLq~vRPAfm-------dEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~ 260 (267)
T PF10234_consen 194 NLEAKIEKKKQELERNQKRLQSLQSVRPAFM-------DEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNR 260 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455566666666666666666555554555 445555666666666777788888888888887654
No 255
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.73 E-value=96 Score=38.82 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=8.0
Q ss_pred CCccccccccccc
Q 000924 588 TCPEVKENRGIQL 600 (1222)
Q Consensus 588 ~~~~~~~~~~~~~ 600 (1222)
+|-.|.--+|.-+
T Consensus 467 ~c~~V~pi~Gf~~ 479 (741)
T KOG4460|consen 467 PCRQVAPIRGFWI 479 (741)
T ss_pred cccccccccceee
Confidence 6666666666544
No 256
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=76.52 E-value=41 Score=39.20 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=11.2
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 000924 890 ASKGDREALQHLCVNQVE 907 (1222)
Q Consensus 890 AakgdveELeelC~aEVE 907 (1222)
.-.|+..+.+.+......
T Consensus 194 ~I~G~~~~A~~~~~~~~~ 211 (355)
T PF09766_consen 194 EIVGDEEEAKAFERQQEN 211 (355)
T ss_pred EEEecHHHHHHHHhcccc
Confidence 335888777766655433
No 257
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=76.38 E-value=1.3e+02 Score=34.83 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 000924 768 IIREIKQLKQRREQ 781 (1222)
Q Consensus 768 LLKEIKQLKKsRKk 781 (1222)
|=..|..|++.|..
T Consensus 55 i~~k~~e~r~~r~l 68 (338)
T KOG3647|consen 55 IGDKIEELRKAREL 68 (338)
T ss_pred HHHHHHHHHHHHHH
Confidence 44556666666653
No 258
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=76.36 E-value=1.7e+02 Score=34.77 Aligned_cols=81 Identities=11% Similarity=0.095 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHhCChHH
Q 000924 841 LKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLE-LWNNNDEF 919 (1222)
Q Consensus 841 I~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMe-lWN~dkeF 919 (1222)
+..+...+.............+..|+.=+......|..+-..+ +|.......++.+-..|+.|+.++.+ --.....|
T Consensus 313 ~~~~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F~~aY~~LL~Ev--~RRr~~~~k~~~i~~~~~eeL~~l~eeE~~~Re~F 390 (412)
T PF04108_consen 313 FHDFEERWEEEKESIQAYIDELEQLCEFYEGFLSAYDSLLLEV--ERRRAVRDKMKKIIREANEELDKLREEEQRRREAF 390 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444444444444433322 33334456666777778888888765 23344555
Q ss_pred HHHH
Q 000924 920 RKEY 923 (1222)
Q Consensus 920 RkDY 923 (1222)
|.+|
T Consensus 391 ~~e~ 394 (412)
T PF04108_consen 391 LKEY 394 (412)
T ss_pred HHHc
Confidence 5555
No 259
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=76.28 E-value=1.2e+02 Score=32.81 Aligned_cols=127 Identities=13% Similarity=0.222 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 767 QIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG 846 (1222)
Q Consensus 767 KLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQe 846 (1222)
...++...|--+ +..|.....-+...+.++..+...+..+.+.++.++.++.++...-+.-.+|+..+..+|.+++.
T Consensus 81 ~a~~e~~~l~~~---L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~ 157 (216)
T cd07627 81 QALQDVLTLGVT---LDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAER 157 (216)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 333444444433 33333344445666777777766677777788877777666642111113344444445544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HHHH
Q 000924 847 QFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERV---LELW 913 (1222)
Q Consensus 847 ElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkF---MelW 913 (1222)
....+.. .|+.+ -+....-...|.. .++.++ ...|..|...+++.+ +++|
T Consensus 158 ~~~~a~~----~~e~i---s~~~k~El~rF~~-----~r~~df-----k~~l~~~~e~~ie~~k~~ie~W 210 (216)
T cd07627 158 RASELKK----EFEEV---SELIKSELERFER-----ERVEDF-----RNSVEIYLESAIESQKELIELW 210 (216)
T ss_pred HHHHHHH----HHHHH---HHHHHHHHHHHHH-----HHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 23333 3322233333332 223334 345667777777765 6666
No 260
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=76.16 E-value=79 Score=35.82 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=67.4
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 755 IAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLH 834 (1222)
Q Consensus 755 IQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~ 834 (1222)
|.|..|+-..|.-+++..+..+..|.....+..-++.+.-.+.-.+.-++-+..-+.+++-+-..--..-.+++++.+-+
T Consensus 1 ma~~~i~~s~e~~~~~Kle~ik~Ir~ktl~~ek~k~r~~~ei~a~~~ee~~leey~~em~~lL~ekm~Hveelr~iHadi 80 (286)
T KOG4451|consen 1 MAHQPIPRSSEFLFLQKLELIKSIRSKTLFFEKFKERCRFEICAFTWEEENLEEYELEMGVLLLEKMGHVEELREIHADI 80 (286)
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45677888888888888888777776543322112211111111111122333445555554333333334566677667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 835 REESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1222)
Q Consensus 835 DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNk 874 (1222)
+++.+.|....+..+.+..--...|++..+|+...|++..
T Consensus 81 N~men~ikq~k~~~~~~~~~~~r~~eey~~lk~h~d~lR~ 120 (286)
T KOG4451|consen 81 NEMENDIKQVKALEQHITSCNGRKGEEYMELKSHADELRQ 120 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 7776666666665666666666667777777777777654
No 261
>PLN03188 kinesin-12 family protein; Provisional
Probab=75.68 E-value=3.2e+02 Score=37.47 Aligned_cols=37 Identities=27% Similarity=0.291 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 834 HREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAY 870 (1222)
Q Consensus 834 ~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERD 870 (1222)
+.+......--+++...+-.+-.++|.++.+|++.++
T Consensus 1206 l~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~ 1242 (1320)
T PLN03188 1206 LKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHE 1242 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455566666777788889999999988873
No 262
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=75.65 E-value=1.6e+02 Score=34.14 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000924 710 DERSARESLKSKRQEIDSVQSR 731 (1222)
Q Consensus 710 E~KqlReer~EKIKEIk~LQea 731 (1222)
+..+||..+..|+.|++..++.
T Consensus 47 ~~~q~~~~i~~k~~e~r~~r~l 68 (338)
T KOG3647|consen 47 QRDQYRSLIGDKIEELRKAREL 68 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888877766553
No 263
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=75.41 E-value=39 Score=31.44 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQ 729 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQ 729 (1222)
.|++.+..|+..+..+...-.....+++.++.+|+....+|..+..+...++..+....++++..+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667777777766666666666777888888888888888888887777777777777766554
No 264
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=75.37 E-value=94 Score=31.22 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 831 KKLHREESEKLKRLLGQFKAADEIRQEAYKHWQS 864 (1222)
Q Consensus 831 sKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIke 864 (1222)
.++++.+...+..++..+..+.+..+..+..+..
T Consensus 100 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 100 DKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 265
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=75.37 E-value=48 Score=39.02 Aligned_cols=129 Identities=17% Similarity=0.292 Sum_probs=69.7
Q ss_pred ccccccceeccCCceeeecCCCCChHHHHHHHHHHHhHHH-----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000924 638 ESRNIGVEVVKQPFYFLVKVPRYDDENLREQIKAAQSKVD-----------EKTRSRDAIRDDIQTIRASYKEYAEKLEA 706 (1222)
Q Consensus 638 de~~~~~qv~K~~FyYfVKvpRPDDEeLKAKIdeLqKEIe-----------KLnq~RdaI~eELkalRaERdELiEQLKe 706 (1222)
.+|.--.+-+-+.+ =|.+ +.|-..+..-+++...... .|......|...+..+..+=.-|+.|+..
T Consensus 194 ~eWklEvERV~PqL--Kv~~-~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~ 270 (359)
T PF10498_consen 194 AEWKLEVERVLPQL--KVTI-RADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEP 270 (359)
T ss_pred HHHHHHHHHHhhhh--eeec-cCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45655555444544 1111 2344556666655554433 23334444555556666677777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCC------CChHHHHHHHHH
Q 000924 707 AISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHET------LPLKEEKQIIRE 771 (1222)
Q Consensus 707 LReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgS------LSLvEEKKLLKE 771 (1222)
+..++++.+..+.+-..+++.+...+..+. ....+|..++..+-..|+-.. =||+.=|+.|..
T Consensus 271 l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t--~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~k 339 (359)
T PF10498_consen 271 LIQEYRSAQDELSEVQEKYKQASEGVSERT--RELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTK 339 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 888777777777777766666665554432 244445555544444444332 255555555443
No 266
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.24 E-value=27 Score=37.39 Aligned_cols=72 Identities=14% Similarity=0.366 Sum_probs=49.5
Q ss_pred eccCCceeeecCCCCChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 646 VVKQPFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR------ASYKEYAEKLEAAISDERSARESLK 719 (1222)
Q Consensus 646 v~K~~FyYfVKvpRPDDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalR------aERdELiEQLKeLReE~KqlReer~ 719 (1222)
++...||| -+|.-..-.++.+++.+++++..++.....+..++...+ .+|..+..++..|+.+.+.++..+.
T Consensus 50 iGssn~YW--sFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 50 IGSSNYYW--SFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred ccCeeEEE--ecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455655 556656778889999999999999999999988887775 4555555555555555544444443
No 267
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=75.22 E-value=1.3e+02 Score=32.60 Aligned_cols=72 Identities=17% Similarity=0.350 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q 000924 853 EIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVN 925 (1222)
Q Consensus 853 EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMelWN~dkeFRkDYeK 925 (1222)
++-+.+-..-..|......+...|-..+..+. -++-..+.....+..|...|=.++|.||-.=-.||..|..
T Consensus 88 eQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~-~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~e 159 (182)
T PF15035_consen 88 EQLEQARKANEALQEDLQKLTQDWERLRDELE-QKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAE 159 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444443334433333332 2223334444456678889999999999999999988753
No 268
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=75.06 E-value=27 Score=40.15 Aligned_cols=92 Identities=17% Similarity=0.272 Sum_probs=49.3
Q ss_pred ecCCCCChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 000924 655 VKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD-------ERSARESLKSKRQEIDS 727 (1222)
Q Consensus 655 VKvpRPDDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE-------~KqlReer~EKIKEIk~ 727 (1222)
||+|.|+ .+-.=+.+-+--|..|+.+-.+-...+...-.+-.+|..||-..++. +=+.+-.+++-++||++
T Consensus 51 ikPP~PE--QYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQ 128 (305)
T PF15290_consen 51 IKPPNPE--QYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQ 128 (305)
T ss_pred CCCCCHH--HhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555443 33333333333444444433333344444445555555555555543 22455567788888888
Q ss_pred HHHHHHhhccCCCHHHHHHHHHH
Q 000924 728 VQSRINMMKNAISVDDIDGSIRN 750 (1222)
Q Consensus 728 LQeaLnKLRnAkSVEEIDarIa~ 750 (1222)
|++.+.-+|+ |..+-|+-|+.
T Consensus 129 LkQvieTmrs--sL~ekDkGiQK 149 (305)
T PF15290_consen 129 LKQVIETMRS--SLAEKDKGIQK 149 (305)
T ss_pred HHHHHHHHHh--hhchhhhhHHH
Confidence 8888877774 55555655543
No 269
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=75.05 E-value=11 Score=42.85 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=10.7
Q ss_pred CcchHHHHHHHHHHHhhhHHHHHHHHH
Q 000924 1038 KLTKEEEEMARKAEEKRKEEATAKLRE 1064 (1222)
Q Consensus 1038 k~~Kee~e~~rk~~~~~~e~~~ak~kE 1064 (1222)
+.+++...++.|.-++..++-.....+
T Consensus 251 ~l~~e~~~K~~k~R~~~~~~~~K~~~~ 277 (321)
T PF07946_consen 251 KLSPEAKKKAKKNREEEEEKILKEAHQ 277 (321)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333333333
No 270
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=74.83 E-value=1.3e+02 Score=32.71 Aligned_cols=164 Identities=11% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 742 DDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVI 821 (1222)
Q Consensus 742 EEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLk 821 (1222)
++....|..||.++ |++.+.+..|-+.|+.+....+..+..-..++.-+. ...+...-..+..+-.++.
T Consensus 15 ~~~k~~i~~Le~~L----------k~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~-~~~Ls~al~~la~~~~ki~ 83 (224)
T cd07623 15 EEKQQQIENLDQQL----------RKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEE-HTSLSRALSQLAEVEEKIE 83 (224)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHhHHHHHHHHH
Q 000924 822 KAEAA-TQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQH------------FWKYKDDTKQAND 888 (1222)
Q Consensus 822 kLeaE-lKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNke------------FYqnRr~i~KARE 888 (1222)
.+... ...-.-.+-+.=.+.-.+..-.+.+-..|.++|..|+.+...+..+... +.+....+..+..
T Consensus 84 ~~~~~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~ 163 (224)
T cd07623 84 QLHGEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEA 163 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q ss_pred HHhc--CCHHHHHHHHHHHHHHHHHHHhCC
Q 000924 889 LASK--GDREALQHLCVNQVERVLELWNNN 916 (1222)
Q Consensus 889 LAak--gdveELeelC~aEVEkFMelWN~d 916 (1222)
-... .+...+-..+..|+.+|-..+..|
T Consensus 164 ~~~~a~~~fe~is~~~k~El~rF~~erv~d 193 (224)
T cd07623 164 KVDRGQKEFEEISKTIKKEIERFEKNRVKD 193 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 271
>PRK10698 phage shock protein PspA; Provisional
Probab=74.75 E-value=1.4e+02 Score=32.89 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=35.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 794 LAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD 852 (1222)
Q Consensus 794 ESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~ 852 (1222)
.++.++....+++..|..+++.....+..+...+..|..++.+.+.+-..|..+.+.+.
T Consensus 89 ~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 89 AALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666677777777766666666666666555555555555554444443
No 272
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=74.71 E-value=1.9e+02 Score=34.37 Aligned_cols=59 Identities=10% Similarity=0.024 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 813 ADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1222)
Q Consensus 813 IDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDE 871 (1222)
+.+.+..--.++.++..+..+|++...-|...++-+......+.+...++..|-++---
T Consensus 210 ~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~ 268 (391)
T KOG1850|consen 210 LEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLI 268 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344556667888999999888888888888888888888888777665433
No 273
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.63 E-value=95 Score=37.99 Aligned_cols=14 Identities=43% Similarity=0.503 Sum_probs=6.9
Q ss_pred HhccCcccccCCCC
Q 000924 533 KEKGGIQFTSGESD 546 (1222)
Q Consensus 533 ~~~~~~~~~~~~~~ 546 (1222)
.+-.|-+|-+.|.|
T Consensus 133 ~efNGk~Fn~le~e 146 (493)
T KOG0804|consen 133 EEFNGKQFNSLEPE 146 (493)
T ss_pred HHcCCCcCCCCCcc
Confidence 34455555555544
No 274
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=74.48 E-value=18 Score=44.46 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 1063 REQRRLEEKAKAQEALERKKRIAEKAQ 1089 (1222)
Q Consensus 1063 kE~kr~Ee~~Kak~a~eRKkk~aeKaa 1089 (1222)
.+.+|.|+|++.++++++|+.+||.++
T Consensus 204 ~~~q~~eqi~~~~~~~e~kr~Eaerk~ 230 (591)
T KOG2412|consen 204 REKQRKEQIRERKERSEEKREEAERKR 230 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 334444455555555555555444443
No 275
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=73.92 E-value=48 Score=32.07 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=10.9
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000924 748 IRNMEHRIAHETLPLKEEKQIIREIKQL 775 (1222)
Q Consensus 748 Ia~LE~RIQTgSLSLvEEKKLLKEIKQL 775 (1222)
+..|--+++.=...+.|=+.++.+|..|
T Consensus 15 ~~~l~~~~~~l~~~~~E~~~v~~EL~~l 42 (105)
T cd00632 15 LQAYIVQRQKVEAQLNENKKALEELEKL 42 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333333333344444444444444
No 276
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=73.85 E-value=2.9e+02 Score=36.13 Aligned_cols=43 Identities=5% Similarity=0.142 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 674 SKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (1222)
Q Consensus 674 KEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlRe 716 (1222)
..|..++.+|++|..+++..-..-+.++.|+...++....++.
T Consensus 836 ~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~Lnk 878 (1480)
T COG3096 836 AEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNR 878 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888877766666666666666555544443
No 277
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=73.71 E-value=1.1e+02 Score=31.05 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=12.2
Q ss_pred HHHHHHHHHhCChHHHHHHHHhh
Q 000924 905 QVERVLELWNNNDEFRKEYVNSN 927 (1222)
Q Consensus 905 EVEkFMelWN~dkeFRkDYeKrn 927 (1222)
.|+.|+... .+-|+.|+.|-
T Consensus 125 d~~~Fl~~f---~~~R~~yH~R~ 144 (150)
T PF07200_consen 125 DVDDFLKQF---KEKRKLYHLRR 144 (150)
T ss_dssp HHHHHHHHH---HHHHHHHHHHH
T ss_pred CHHHHHHHH---HHHHHHHHHHH
Confidence 455555444 45677887764
No 278
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=73.65 E-value=54 Score=32.06 Aligned_cols=37 Identities=14% Similarity=0.303 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHH
Q 000924 744 IDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRRE 780 (1222)
Q Consensus 744 IDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRK 780 (1222)
+...|..|.-+++.=...+.|=+..+++|+.|...++
T Consensus 15 ~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~ 51 (110)
T TIGR02338 15 LQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTP 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcch
Confidence 3444555555555544555555555555555554444
No 279
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.62 E-value=72 Score=29.98 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 839 EKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (1222)
Q Consensus 839 aEI~ELQeElkAL~EKRDEAYeeIkeLRKE 868 (1222)
.+...|..+...+...|...+.+|+.|=..
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444555555555555555555443
No 280
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.54 E-value=59 Score=35.62 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 000924 806 MKFLRKEADSLRE 818 (1222)
Q Consensus 806 IKaLKKEIDELRk 818 (1222)
+..+.+++.+++.
T Consensus 95 lp~le~el~~l~~ 107 (206)
T PRK10884 95 VPDLENQVKTLTD 107 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 281
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=73.51 E-value=2.1e+02 Score=34.25 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 000924 713 SARESLKSKRQEIDSVQSRINM 734 (1222)
Q Consensus 713 qlReer~EKIKEIk~LQeaLnK 734 (1222)
..++.+.+...|++.||..-.+
T Consensus 89 ~i~es~~e~q~e~~qL~~qnqk 110 (401)
T PF06785_consen 89 KIRESVEERQQESEQLQSQNQK 110 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 3344445555555555543333
No 282
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.45 E-value=2.6e+02 Score=35.33 Aligned_cols=90 Identities=18% Similarity=0.307 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh-hccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 762 LKEEKQIIREIKQLKQRREQISS-SIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEK 840 (1222)
Q Consensus 762 LvEEKKLLKEIKQLKKsRKkViA-nAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaE 840 (1222)
-.+||..+.||.+.++.++.+.. ....++...+. ..++..++.+...|..-+.+...+++-+.=.++.-+.+
T Consensus 323 ~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~ek-------e~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEe 395 (654)
T KOG4809|consen 323 ERDERERLEEIESFRKENKDLKEKVNALQAELTEK-------ESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEE 395 (654)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 46788888888888887776522 11122222222 22334455555555555555544555555555555666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000924 841 LKRLLGQFKAADEIRQEA 858 (1222)
Q Consensus 841 I~ELQeElkAL~EKRDEA 858 (1222)
+..+..++..++..-+.|
T Consensus 396 c~kme~qLkkAh~~~dda 413 (654)
T KOG4809|consen 396 CSKMEAQLKKAHNIEDDA 413 (654)
T ss_pred HHHHHHHHHHHHHhhHhh
Confidence 666666676666666555
No 283
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=73.30 E-value=26 Score=32.54 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000924 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE 711 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~ 711 (1222)
...|..||+.|-...++++..-..|+.++..+..+|..|++++...+.+.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999988877766543
No 284
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=73.28 E-value=2.8e+02 Score=36.25 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=19.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 685 AIRDDIQTIRASYKEYAEKLEAAISDERS 713 (1222)
Q Consensus 685 aI~eELkalRaERdELiEQLKeLReE~Kq 713 (1222)
+|.-+++++|.+-..|+.+|+.|-+++++
T Consensus 384 EIALA~QplrsENaqLrRrLrilnqqlre 412 (861)
T PF15254_consen 384 EIALAMQPLRSENAQLRRRLRILNQQLRE 412 (861)
T ss_pred hhHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34455677888888888888777665543
No 285
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.26 E-value=22 Score=33.74 Aligned_cols=60 Identities=13% Similarity=0.270 Sum_probs=46.1
Q ss_pred HHHHHHHHH-------HHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 663 ENLREQIKA-------AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKR 722 (1222)
Q Consensus 663 EeLKAKIde-------LqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKI 722 (1222)
+.|.+||.+ |+-+|++++++.+.|..+.+..+..|..|..+-..|+++...|+.-+...+
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555554 466888999999999999999999999999888888888888776554443
No 286
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=73.19 E-value=1e+02 Score=31.39 Aligned_cols=19 Identities=5% Similarity=0.342 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000924 801 QIEEKMKFLRKEADSLREN 819 (1222)
Q Consensus 801 aIqEQIKaLKKEIDELRkK 819 (1222)
.++.++..|-..|...+..
T Consensus 13 el~n~La~Le~slE~~K~S 31 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTS 31 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444443
No 287
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=73.15 E-value=4.7e+02 Score=38.27 Aligned_cols=236 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000924 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTI-------------RASYKEYAEKLEAAISDERSARESLKSKRQEIDS-- 727 (1222)
Q Consensus 663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkal-------------RaERdELiEQLKeLReE~KqlReer~EKIKEIk~-- 727 (1222)
+-...+|.+.++++...+..-......+... ...+....+-+..++.....++..++..+++++.
T Consensus 879 e~s~~kLn~yE~eFnd~ks~V~~t~k~IE~~~KnIdtlK~LN~~In~c~~~kesI~~~~nkk~~LkekL~k~I~~I~~~~ 958 (2757)
T TIGR01612 879 EISDDKLNDYEKKFNDSKSLINEINKSIEEEYQNINTLKKVDEYIKICENTKESIEKFHNKQNILKEILNKNIDTIKESN 958 (2757)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHhccC
Q ss_pred -------------HHHHHHhhc---cCCCHHHHHHHHHHHHHHhhcCC--CChHHHHHHHHHHHHHHHHHHHhhh-----
Q 000924 728 -------------VQSRINMMK---NAISVDDIDGSIRNMEHRIAHET--LPLKEEKQIIREIKQLKQRREQISS----- 784 (1222)
Q Consensus 728 -------------LQeaLnKLR---nAkSVEEIDarIa~LE~RIQTgS--LSLvEEKKLLKEIKQLKKsRKkViA----- 784 (1222)
|+..++++. +-.+..+++..+..|-.--...- |...+|--++.++..-+++-..+..
T Consensus 959 ~Iek~~t~~ll~~L~dkk~~i~~~l~e~sLNdletk~~~Ll~Yf~~~K~nl~~~~e~~~~~qlde~ek~~~dIk~ki~~l 1038 (2757)
T TIGR01612 959 LIEKSYKDKFDNTLIDKINELDKAFKDASLNDYEAKNNELIKYFNDLKANLGKNKENMLYHQFDEKEKATNDIEQKIEDA 1038 (2757)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHhhHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------------------hccchhHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 785 ------------------SIGEHDEVQLAFDQKD-QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLL 845 (1222)
Q Consensus 785 ------------------nAa~rAKIQESidQKE-aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQ 845 (1222)
.......+...+..+. .|.+.++.--.-|.+++.+|..+.- -+-...+--....+|.++.
T Consensus 1039 N~Ny~nie~~i~~sI~n~~eei~~~i~k~I~~~~~eI~ekv~~ni~~LneIK~KL~~~~~-~D~~K~~N~k~~~eI~kik 1117 (2757)
T TIGR01612 1039 NKNIPNIEIAIHTSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNEIKEKLKHYNF-DDFGKEENIKYADEINKIK 1117 (2757)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhHHHHHHHHhcccH-hhhhhhhccccHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHhcCCHHHHH
Q 000924 846 GQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND-LASKGDREALQ 899 (1222)
Q Consensus 846 eElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARE-LAakgdveELe 899 (1222)
.....+...+|....++..+++.-+.....|-.-...+-++.+ -.+.-+.++|+
T Consensus 1118 ~~i~~l~~~ID~~i~kl~~ikkks~~~~~e~~~~~~~~ek~~~kt~~n~~~k~Ie 1172 (2757)
T TIGR01612 1118 DDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIE 1172 (2757)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcchhhhhcchhhcccCHHHHH
No 288
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=72.57 E-value=1.8e+02 Score=33.08 Aligned_cols=151 Identities=11% Similarity=0.148 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 767 QIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG 846 (1222)
Q Consensus 767 KLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQe 846 (1222)
.+|.+..++-+.|..+..+. ...|-..++.++..++.++++.... ...+...+...-.+|....+
T Consensus 74 ~~L~qt~~~A~~~~~~ae~l------------~~~i~~~l~~l~~~~~~~~Kk~~e~---~~~lq~el~~~~~eL~ksKK 138 (264)
T cd07654 74 AWLEGLDAVAQSRQNRCEAY------------RRYISEPAKTGRSAKEQQLKKCTEQ---LQRAQAEVQQTVRELSKSRK 138 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666553321 1234445566666666666554332 33344444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHh
Q 000924 847 QFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNS 926 (1222)
Q Consensus 847 ElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMelWN~dkeFRkDYeKr 926 (1222)
.+..+...-..++++..+--++.......|++.|..+.|+++-+.....+.-..+..+--|=.+.+-..|..-.+.|..
T Consensus 139 ~Y~~~~~~~~~ar~K~~~a~~~~~k~~~~~~~sk~~~eK~~~K~~~k~~~~~~k~~~akNeYll~L~~aN~~q~kYY~~- 217 (264)
T cd07654 139 TYFEREQVAHLAREKAADVQAREARSDLSIFQSRTSLQKASVKLSARKAECSSKATAARNDYLLNLAATNAHQDRYYQT- 217 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 4433333222333333221112222223555555555555444333322222223334444445555555555444443
Q ss_pred hhhhHhh
Q 000924 927 NIRSTLR 933 (1222)
Q Consensus 927 nl~Sl~r 933 (1222)
-++-+..
T Consensus 218 dLP~lld 224 (264)
T cd07654 218 DLPAIIK 224 (264)
T ss_pred hHHHHHH
Confidence 3444443
No 289
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=72.43 E-value=3e+02 Score=35.60 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=10.3
Q ss_pred HHHHHHHhhhhhHhhhhcCCC
Q 000924 919 FRKEYVNSNIRSTLRRLKTLD 939 (1222)
Q Consensus 919 FRkDYeKrnl~Sl~rRqlT~D 939 (1222)
+|-+=+=-+++-..+|+...+
T Consensus 604 ~rleEE~e~L~~kle~~k~~~ 624 (698)
T KOG0978|consen 604 KRLEEELERLKRKLERLKKEE 624 (698)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 444444445555555555443
No 290
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=72.41 E-value=1.3e+02 Score=37.39 Aligned_cols=146 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhc
Q 000924 707 AISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSI 786 (1222)
Q Consensus 707 LReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnA 786 (1222)
.+.....++..+....+++..|+....-++ -..|-.=+|..++-+|=+.+++-.=.+|..+.+.....
T Consensus 157 ~~~~~EaL~ekLk~~~een~~lr~k~~llk--------~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~k---- 224 (596)
T KOG4360|consen 157 QRELLEALQEKLKPLEEENTQLRSKAMLLK--------TETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSK---- 224 (596)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHH--------hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 787 GEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLK 866 (1222)
Q Consensus 787 a~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLR 866 (1222)
-.+.....++.-.+..+|..+.+++..++=+...+..-+.+..+.-+++.+++.+++++.-+.-..--++-++|+.||
T Consensus 225 --t~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 225 --TKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 291
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.06 E-value=2.4e+02 Score=34.47 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHhhcCC---CChHHHHHHHHHHHHHHHHHH
Q 000924 740 SVDDIDGSIRNMEHRIAHET---LPLKEEKQIIREIKQLKQRRE 780 (1222)
Q Consensus 740 SVEEIDarIa~LE~RIQTgS---LSLvEEKKLLKEIKQLKKsRK 780 (1222)
+..-|......+-..++..+ =+++-.-..+++|..|+.+.+
T Consensus 280 ~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e 323 (446)
T KOG4438|consen 280 NLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIE 323 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555 456666667777777777754
No 292
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=71.92 E-value=1.6e+02 Score=32.26 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=8.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 000924 686 IRDDIQTIRASYKEYAEKLEAA 707 (1222)
Q Consensus 686 I~eELkalRaERdELiEQLKeL 707 (1222)
+...+...=.+...+..++..+
T Consensus 43 ~~~~i~~aP~~~~~l~~~l~~l 64 (240)
T PF12795_consen 43 YQKQIDQAPKEIRELQKELEAL 64 (240)
T ss_pred HHHHHHHhHHHHHHHHHHHHhh
Confidence 3333333333333333333333
No 293
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=71.89 E-value=1.2 Score=55.00 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=12.3
Q ss_pred HHHH-HHHHHHHHHHHhhcc
Q 000924 1191 MWVL-IIALVVFALFLLGNS 1209 (1222)
Q Consensus 1191 mW~~-~AAlvVlaLfvlGy~ 1209 (1222)
||.. +.-+--+...++||-
T Consensus 628 vf~~ks~eFr~av~~llGyk 647 (722)
T PF05557_consen 628 VFKAKSQEFREAVYSLLGYK 647 (722)
T ss_dssp HHHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHHHHHHhcce
Confidence 4754 444666667778886
No 294
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=71.86 E-value=63 Score=32.77 Aligned_cols=55 Identities=15% Similarity=0.363 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 664 NLREQIKAAQSKVDEKTRSRDA-------IRDDIQTIRASYKEYAEKLEAAISDERSARESL 718 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLnq~Rda-------I~eELkalRaERdELiEQLKeLReE~KqlReer 718 (1222)
.+..++..++..|+..+..+.. |.+.++.+++++.....++.+|..++..++..+
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655544444 444444444444444444444444444444433
No 295
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=71.86 E-value=2.5e+02 Score=34.42 Aligned_cols=33 Identities=6% Similarity=0.051 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000924 851 ADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT 883 (1222)
Q Consensus 851 L~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i 883 (1222)
+..+|+.-..++.+|+.....+...+.......
T Consensus 369 v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~ 401 (582)
T PF09731_consen 369 VEQERNGRLAKLAELNSRLKALEEALDARSEAE 401 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666677776666666555444333
No 296
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=71.76 E-value=1.3 Score=44.75 Aligned_cols=89 Identities=10% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhH
Q 000924 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD---KNQHFWKYK 880 (1222)
Q Consensus 804 EQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDE---kNkeFYqnR 880 (1222)
+.+..+...++..+..+..+...++.+...+......+......+..|......++.+++.|...... +....-+-|
T Consensus 17 ~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~~Ir 96 (138)
T PF06009_consen 17 DRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSNLSRNISRIR 96 (138)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 34444555555555555555555555555555555666666666666666667777777777776666 777777888
Q ss_pred HHHHHHHHHHhc
Q 000924 881 DDTKQANDLASK 892 (1222)
Q Consensus 881 r~i~KARELAak 892 (1222)
+.+.+||+.|.+
T Consensus 97 elI~qAR~~An~ 108 (138)
T PF06009_consen 97 ELIAQARDAANR 108 (138)
T ss_dssp ------------
T ss_pred HHHHHHHHHHhh
Confidence 888889998764
No 297
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=71.27 E-value=18 Score=44.04 Aligned_cols=68 Identities=26% Similarity=0.349 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHhhhhhHh
Q 000924 858 AYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWN-----NNDEFRKEYVNSNIRSTL 932 (1222)
Q Consensus 858 AYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMelWN-----~dkeFRkDYeKrnl~Sl~ 932 (1222)
-|.||+.||.=.......=|.|...- |.-|| .|++.+| +-.-|++-|-.--+
T Consensus 77 ~vdhI~nlrrIiagyl~~aygY~~~~--a~~lA-----------------~fit~YNAv~R~~~~~~~~~Y~~~v~---- 133 (489)
T PF05262_consen 77 RVDHINNLRRIIAGYLEAAYGYSDED--AETLA-----------------TFITIYNAVYRGDLDYFKKKYKNVVI---- 133 (489)
T ss_pred CccHHHHHHHHHHHHHHHhcCCChhh--HHHHH-----------------HHHHHHHHHHcCCHHHHHHHhhHHHH----
Confidence 37888888887777666555554432 22232 4666655 34455666654433
Q ss_pred hhhcCCC--CCCCCCCCCC
Q 000924 933 RRLKTLD--GRSLGPDEEA 949 (1222)
Q Consensus 933 rRqlT~D--GR~rnPDEkP 949 (1222)
+-||.+ |=+|..++=|
T Consensus 134 -~~l~~~k~Gls~~y~eWp 151 (489)
T PF05262_consen 134 -KNLTPEKAGLSRRYSEWP 151 (489)
T ss_pred -hhcChhhcccccccccCC
Confidence 444544 5555656555
No 298
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=71.18 E-value=19 Score=44.42 Aligned_cols=9 Identities=22% Similarity=0.398 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 000924 664 NLREQIKAA 672 (1222)
Q Consensus 664 eLKAKIdeL 672 (1222)
.+.+.|+.+
T Consensus 28 dl~a~~as~ 36 (591)
T KOG2412|consen 28 DLVAEIASV 36 (591)
T ss_pred hHHHHhhhh
Confidence 344444433
No 299
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=70.73 E-value=1.8e+02 Score=32.42 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHW 862 (1222)
Q Consensus 801 aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeI 862 (1222)
....+|+.+-..+.+--.....+.-.+..|.+.++++...+.....++..+....|..+..+
T Consensus 141 ~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L 202 (205)
T KOG1003|consen 141 KYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQEL 202 (205)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555544444433333334444555555556655555555555555555555555544
No 300
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=70.52 E-value=1e+02 Score=30.99 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 840 KLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1222)
Q Consensus 840 EI~ELQeElkAL~EKRDEAYeeIkeLRKERDE 871 (1222)
.+.-|.++++.+...+++....+..++++...
T Consensus 95 A~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~ 126 (140)
T PRK03947 95 AIEILDKRKEELEKALEKLEEALQKLASRIAQ 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333
No 301
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=70.28 E-value=45 Score=32.19 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000924 806 MKFLRKEADSLRENVIK 822 (1222)
Q Consensus 806 IKaLKKEIDELRkKLkk 822 (1222)
|..|+-||++|+.+-..
T Consensus 20 I~LLqmEieELKekn~~ 36 (79)
T PRK15422 20 ITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554333
No 302
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=70.18 E-value=30 Score=39.89 Aligned_cols=27 Identities=44% Similarity=0.400 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 1082 KRIAEKAQTRAALRAQKEAEQKEKEREK 1109 (1222)
Q Consensus 1082 kk~aeKaaa~A~~raqKEAEkKeKErEK 1109 (1222)
|.+.||..++-+.|-||+.| |+|..+-
T Consensus 381 kf~fekieareerrkqkeee-klk~e~q 407 (445)
T KOG2891|consen 381 KFEFEKIEAREERRKQKEEE-KLKAEEQ 407 (445)
T ss_pred HHHHHHHHHHHHHHhhhHHH-HHHHHHH
Confidence 44555666665555555555 4444443
No 303
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=69.81 E-value=4.1 Score=50.65 Aligned_cols=77 Identities=21% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 000924 694 RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIK 773 (1222)
Q Consensus 694 RaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIK 773 (1222)
+.+...|.+++..+..+.+.+...+...-.++..+...+.+++ .+.......+.+||.+... +.+|+.
T Consensus 349 q~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~--~~~~~~~~~~~RLerq~~L----------~~kE~d 416 (722)
T PF05557_consen 349 QQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELE--ASLEALKKLIRRLERQKAL----------ATKERD 416 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 4444444444444444444444444333333333333333332 2333344445555444332 235555
Q ss_pred HHHHHHHHh
Q 000924 774 QLKQRREQI 782 (1222)
Q Consensus 774 QLKKsRKkV 782 (1222)
-|+.+.+.+
T Consensus 417 ~LR~~L~sy 425 (722)
T PF05557_consen 417 YLRAQLKSY 425 (722)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 555554433
No 304
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=69.75 E-value=1.8e+02 Score=32.13 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 805 KMKFLRKEADSLRENVIKAEAATQAVK 831 (1222)
Q Consensus 805 QIKaLKKEIDELRkKLkkLeaElKELs 831 (1222)
+-..+..+.+.++++...|-.+...+.
T Consensus 110 en~kl~~e~~~lk~~~~eL~~~~~~Lq 136 (193)
T PF14662_consen 110 ENGKLLAERDGLKKRSKELATEKATLQ 136 (193)
T ss_pred HHhHHHHhhhhHHHHHHHHHHhhHHHH
Confidence 333344444444444444433333333
No 305
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=69.72 E-value=1.5e+02 Score=31.03 Aligned_cols=29 Identities=24% Similarity=0.157 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHH
Q 000924 896 EALQHLCVNQVERVLELWNNNDEFRKEYV 924 (1222)
Q Consensus 896 eELeelC~aEVEkFMelWN~dkeFRkDYe 924 (1222)
..|=.-|...++..-.++..=..+|..+.
T Consensus 141 P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~ 169 (177)
T PF13870_consen 141 PALLRDYDKTKEEVEELRKEIKELERKVE 169 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544456666666666665555555443
No 306
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.46 E-value=2.9e+02 Score=34.35 Aligned_cols=157 Identities=11% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000924 698 KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQ 777 (1222)
Q Consensus 698 dELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKK 777 (1222)
.+|..++|.-.++.+.+|..++.-..++..|+ -..+-.+..++++..+...|.|||- |++..+.-|++
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq--k~~ad~~~KI~~~k~r~~~Ls~RiL----------Rv~ikqeilr~ 404 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQ--KHHADAVAKIEEAKNRHVELSHRIL----------RVMIKQEILRK 404 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhc
Q ss_pred HHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Q 000924 778 RREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAV-------------KKLHREESEKLKRL 844 (1222)
Q Consensus 778 sRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKEL-------------sKK~DEIkaEI~EL 844 (1222)
. .|+...++ .+...+.+.|..+++.= .+++..++.|...++.. ..+..+...-+..-
T Consensus 405 ~-----G~~L~~~E-E~Lr~Kldtll~~ln~P----nq~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~ 474 (508)
T KOG3091|consen 405 R-----GYALTPDE-EELRAKLDTLLAQLNAP----NQLKARLDELYEILRMQNSQLKLQESYWIDFDKLIEMKEHLTQE 474 (508)
T ss_pred c-----CCcCCccH-HHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHhhcchhccccceeechhhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000924 845 LGQFKAADEIRQEAYKHW-QSLKKQAYDKNQHF 876 (1222)
Q Consensus 845 QeElkAL~EKRDEAYeeI-keLRKERDEkNkeF 876 (1222)
++-+..|......-|+.| ..|-+-.....++|
T Consensus 475 ~e~l~~Lv~Ilk~d~edi~~~l~E~~~~~~~~~ 507 (508)
T KOG3091|consen 475 QEALTKLVNILKGDQEDIKHQLIEDLEICRKSL 507 (508)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhHHHHhhhc
No 307
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=69.10 E-value=3.5e+02 Score=35.03 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhCChHHHHH
Q 000924 900 HLCVNQVERVLELWNNNDEFRKE 922 (1222)
Q Consensus 900 elC~aEVEkFMelWN~dkeFRkD 922 (1222)
+.|.++++.+....+....-.+.
T Consensus 576 ek~~~~le~i~~~~~e~~~ele~ 598 (698)
T KOG0978|consen 576 EKSEAKLEQIQEQYAELELELEI 598 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677776666555544443
No 308
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=68.96 E-value=30 Score=39.88 Aligned_cols=75 Identities=35% Similarity=0.346 Sum_probs=38.5
Q ss_pred cCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 1035 EVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLE-------EKAKAQ-EALERKKRIAEKAQTRAALRAQKEAEQKEKE 1106 (1222)
Q Consensus 1035 e~Pk~~Kee~e~~rk~~~~~~e~~~ak~kE~kr~E-------e~~Kak-~a~eRKkk~aeKaaa~A~~raqKEAEkKeKE 1106 (1222)
+..++.++.+|+.|-++..++| .+....+.+|++ +.+|.. .++.||+|..||-+++ ...-||-|.|-|+
T Consensus 342 eekkr~eeaeerqraeekeq~e-aee~~ra~kr~egvkllkf~fekieareerrkqkeeeklk~e--~qkikeleek~~e 418 (445)
T KOG2891|consen 342 EEKKREEEAEERQRAEEKEQKE-AEELERARKREEGVKLLKFEFEKIEAREERRKQKEEEKLKAE--EQKIKELEEKIKE 418 (445)
T ss_pred HHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHH
Confidence 3435545555555533333333 444445555555 222222 3445666666665544 4444777777777
Q ss_pred HHHHHh
Q 000924 1107 REKRAR 1112 (1222)
Q Consensus 1107 rEKKAK 1112 (1222)
.|.+.+
T Consensus 419 eedal~ 424 (445)
T KOG2891|consen 419 EEDALL 424 (445)
T ss_pred HHHHHH
Confidence 776554
No 309
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=68.94 E-value=2e+02 Score=32.27 Aligned_cols=166 Identities=13% Similarity=0.184 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 743 DIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIK 822 (1222)
Q Consensus 743 EIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkk 822 (1222)
+-...|..||.++ |++.+-+..|-+.|+.+....+..++.-..++.-+. ...+...-..+-++..++..
T Consensus 26 ~k~~~ie~LE~qL----------k~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~-~~~Ls~als~laev~~~i~~ 94 (234)
T cd07665 26 EKLQEVECEEQRL----------RKLHAVVETLVNHRKELALNTALFAKSLAMLGSSED-NTALSRALSQLAEVEEKIEQ 94 (234)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHH
Confidence 3444566666666 678888888888998887766666654444443221 11111222233333333333
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHhHHHHHH--HH
Q 000924 823 AEAA-TQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQH------------FWKYKDDTKQ--AN 887 (1222)
Q Consensus 823 LeaE-lKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNke------------FYqnRr~i~K--AR 887 (1222)
+.+. .....-.+.+.=.+...+-.-++.+-..|.++|..|+.+...+..+... +.+....++. .|
T Consensus 95 ~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k 174 (234)
T cd07665 95 LHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESR 174 (234)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3211 1111222333334555555567778888999988888876655444333 2222222221 11
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHH
Q 000924 888 DLASKGDREALQHLCVNQVERVLELWNNNDEFRK 921 (1222)
Q Consensus 888 ELAakgdveELeelC~aEVEkFMelWN~dkeFRk 921 (1222)
=..++.+...+-..+..|++||-.--. ..||.
T Consensus 175 ~~~a~~~fe~is~~ik~El~rFe~er~--~Dfk~ 206 (234)
T cd07665 175 VTQYERDFERISATVRKEVIRFEKEKS--KDFKN 206 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 222356777888899999999976543 45665
No 310
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=68.60 E-value=2.2e+02 Score=32.64 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=16.3
Q ss_pred ccccccccccee--ccCCceeeecCCCCChHHHHHHHH
Q 000924 635 DASESRNIGVEV--VKQPFYFLVKVPRYDDENLREQIK 670 (1222)
Q Consensus 635 DA~de~~~~~qv--~K~~FyYfVKvpRPDDEeLKAKId 670 (1222)
++++.|...+.| ...+-+.-+++.-+| |+.-++|.
T Consensus 113 ~~~~~~~~~v~v~~~~~s~ii~I~~~~~d-P~~A~~ia 149 (362)
T TIGR01010 113 AFYRYYKKRLSVDVDSVSGILTLNVTAFD-AEEAQKIN 149 (362)
T ss_pred HHHHHHHhceEEeecCCCCeEEEEEEecC-HHHHHHHH
Confidence 444444444333 223333456666644 45555554
No 311
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=68.37 E-value=2e+02 Score=32.08 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000924 766 KQIIREIKQLKQRREQI 782 (1222)
Q Consensus 766 KKLLKEIKQLKKsRKkV 782 (1222)
+.+|.+|+.|+.+.+..
T Consensus 88 r~al~~~~~le~~~~~~ 104 (225)
T COG1842 88 REALEEKQSLEDLAKAL 104 (225)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666666665444
No 312
>PLN02678 seryl-tRNA synthetase
Probab=68.26 E-value=26 Score=42.28 Aligned_cols=66 Identities=8% Similarity=0.196 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIR---ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQ 729 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalR---aERdELiEQLKeLReE~KqlReer~EKIKEIk~LQ 729 (1222)
.+..+...+..+++.++..|+++..++..++ ..+.+|+++++.|+++++.+...+.....++..+-
T Consensus 37 ~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 37 ALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666677777777777777775432 34556666666666666666666666655555543
No 313
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=68.26 E-value=28 Score=41.31 Aligned_cols=65 Identities=17% Similarity=0.269 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRA---S-YKEYAEKLEAAISDERSARESLKSKRQEIDSV 728 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalRa---E-RdELiEQLKeLReE~KqlReer~EKIKEIk~L 728 (1222)
.+..+..++..+++.++..|+.+..++..++. . +.+|+++++.|+++++.+...+.....++..+
T Consensus 34 ~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666677777777766655321 1 45556666666665555555554444444433
No 314
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=68.11 E-value=1.8e+02 Score=31.48 Aligned_cols=191 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHH--------HHHHHHHHHhh-----------hhccchhHHHHHHhHHHHHH
Q 000924 743 DIDGSIRNMEHRIAHETLPLKEEKQIIREI--------KQLKQRREQIS-----------SSIGEHDEVQLAFDQKDQIE 803 (1222)
Q Consensus 743 EIDarIa~LE~RIQTgSLSLvEEKKLLKEI--------KQLKKsRKkVi-----------AnAa~rAKIQESidQKEaIq 803 (1222)
+|-..+..|..+++.|.--+.+=..++++- ++|.+.-..+. .+......+..........+
T Consensus 2 ~L~d~~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H 81 (251)
T cd07653 2 ELWDQFDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQH 81 (251)
T ss_pred cchhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000924 804 EKMKF-LRKEA-DSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD 881 (1222)
Q Consensus 804 EQIKa-LKKEI-DELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr 881 (1222)
.++.. |..++ +.+..-+...+..++.+...+..++..+.....++..+...=..++......+.............+.
T Consensus 82 ~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~ 161 (251)
T cd07653 82 ELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKA 161 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchh
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhhhcCCCC
Q 000924 882 DTKQANDLASK--GDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDG 940 (1222)
Q Consensus 882 ~i~KARELAak--gdveELeelC~aEVEkFMelWN~dkeFRkDYeKrnl~Sl~rRqlT~DG 940 (1222)
.+.|++....+ ......+.-|...|..+ -.+...|+..-++.++.++...++
T Consensus 162 ~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~~-------N~~~~~~y~~~~p~~~~~~q~le~ 215 (251)
T cd07653 162 DVEKAKANANLKTQAAEEAKNEYAAQLQKF-------NKEQRQHYSTDLPQIFDKLQELDE 215 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHhH
No 315
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=67.99 E-value=1.2e+02 Score=37.68 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 809 LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQS 864 (1222)
Q Consensus 809 LKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIke 864 (1222)
.+++++.|+++++...+.++.+. ++++.....++.++.++....++-|..+..
T Consensus 217 ~~~e~d~lk~e~~~~~~~i~~~~---~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~ 269 (555)
T TIGR03545 217 IKEEFDKLKKEGKADKQKIKSAK---NDLQNDKKQLKADLAELKKAPQNDLKRLEN 269 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHhccHhHHHHHHH
Confidence 34444444444444333333333 223334444444555555556666666653
No 316
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=67.93 E-value=4.4e+02 Score=35.79 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=14.1
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHh
Q 000924 856 QEAYKHWQSL-------KKQAYDKNQHFWKY 879 (1222)
Q Consensus 856 DEAYeeIkeL-------RKERDEkNkeFYqn 879 (1222)
++||-++..| -.|+.++-..-+.+
T Consensus 1318 QKAYP~M~QlQ~ksealI~qLRelC~~h~~~ 1348 (1439)
T PF12252_consen 1318 QKAYPAMVQLQFKSEALIIQLRELCEAHQDN 1348 (1439)
T ss_pred hhhchHHHHHhhhhHHHHHHHHHHHHHhhHH
Confidence 3777777666 55555554444433
No 317
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=67.52 E-value=1.8e+02 Score=31.12 Aligned_cols=108 Identities=17% Similarity=0.232 Sum_probs=62.4
Q ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCC--CHHHHHHHHH
Q 000924 673 QSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM-KNAI--SVDDIDGSIR 749 (1222)
Q Consensus 673 qKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL-RnAk--SVEEIDarIa 749 (1222)
++-|..+...+.+|..-....|.+...+..+|..++.+....-...+..-..-...+..|... ++|. |.++|...-.
T Consensus 5 ~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe 84 (159)
T PF05384_consen 5 KKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYE 84 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHH
Confidence 344555556666666666677777777777777777666666666655555555555555433 2332 7888876655
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHHH
Q 000924 750 NMEHRIAHETLPLKEEKQIIREIKQLKQRRE 780 (1222)
Q Consensus 750 ~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRK 780 (1222)
....-+-.=.|--.+|++|...=..|+....
T Consensus 85 ~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~ 115 (159)
T PF05384_consen 85 EAHELQVRLAMLREREKQLRERRDELERRLR 115 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444334444455555554444444433
No 318
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=67.46 E-value=1.4e+02 Score=29.75 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 000924 862 WQSLKKQAYDKNQHFWKYKDDT 883 (1222)
Q Consensus 862 IkeLRKERDEkNkeFYqnRr~i 883 (1222)
...|...+......|...+...
T Consensus 90 ~~~L~~~f~~~m~~fq~~Q~~~ 111 (151)
T cd00179 90 HSGLSKKFVEVMTEFNKAQRKY 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555444333
No 319
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=67.15 E-value=76 Score=34.66 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKK 867 (1222)
Q Consensus 798 QKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRK 867 (1222)
..+.+++.|..|+++....++.|..+++-+..+. -+....++..++++...|++.+.
T Consensus 117 t~eemQe~i~~L~kev~~~~erl~~~k~g~~~vt-------------pedk~~v~~~y~~~~~~wrk~kr 173 (201)
T KOG4603|consen 117 TTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVT-------------PEDKEQVYREYQKYCKEWRKRKR 173 (201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666665555544333332 12244556666666666644443
No 320
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=67.07 E-value=2.6e+02 Score=32.75 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 763 KEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLK 842 (1222)
Q Consensus 763 vEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ 842 (1222)
.-||||.+|++.-++.|......- ..+ ...+.+.+-...|...|+.+..|..++.-.-..+ +.+...|.
T Consensus 92 aWEKKLY~EVKa~E~~r~~yeKK~---~~L-r~~d~kg~~~~kidkTra~v~~L~tri~Vaiq~v-------~siS~~I~ 160 (312)
T PF04782_consen 92 AWEKKLYDEVKAEEKLRIEYEKKC---KQL-RKQDAKGADSSKIDKTRASVKDLHTRIRVAIQSV-------DSISKRIE 160 (312)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHH---HHH-HHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 579999999998888876552210 111 1111222222334444555555555444443333 44445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHhC
Q 000924 843 RLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK----DDTKQANDLASK---GDREALQHLCVNQVERVLELWNN 915 (1222)
Q Consensus 843 ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnR----r~i~KARELAak---gdveELeelC~aEVEkFMelWN~ 915 (1222)
.|.+ .++|-.+.+|-.=+-.|.+.+|++= ..+..++-|... .-..+.....-.|.|.-+..|+.
T Consensus 161 kLRD---------eEL~PQL~eLi~Gl~~MWk~M~ecHq~Q~~ii~~~k~l~~~~~~~~~s~~h~~at~~Le~el~~W~~ 231 (312)
T PF04782_consen 161 KLRD---------EELYPQLVELIQGLMRMWKSMLECHQKQFQIIQEAKSLDSSPSNEPTSESHRQATLQLEAELQNWHS 231 (312)
T ss_pred HHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCChHHHHHHHHHHHHHHHHHH
Confidence 5522 4677777777777777777666653 344555544222 34456666677777777777776
Q ss_pred Ch----HHHHHHHHhhhhhHhhhhcC
Q 000924 916 ND----EFRKEYVNSNIRSTLRRLKT 937 (1222)
Q Consensus 916 dk----eFRkDYeKrnl~Sl~rRqlT 937 (1222)
.. ..=++|++.. ..-+++-+.
T Consensus 232 sF~~~i~~Qk~YV~aL-n~WL~~~l~ 256 (312)
T PF04782_consen 232 SFCKWIKAQKSYVKAL-NGWLKLCLM 256 (312)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcc
Confidence 54 4567888764 455555543
No 321
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=66.98 E-value=2e+02 Score=31.59 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 808 FLRKEADSLRENVIKAEAATQAVK 831 (1222)
Q Consensus 808 aLKKEIDELRkKLkkLeaElKELs 831 (1222)
.|...+++|...+....++++.|+
T Consensus 90 ~l~ek~q~l~~t~s~veaEik~L~ 113 (201)
T KOG4603|consen 90 ALTEKVQSLQQTCSYVEAEIKELS 113 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444334444444333
No 322
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=66.97 E-value=2.2e+02 Score=32.02 Aligned_cols=39 Identities=5% Similarity=0.009 Sum_probs=19.8
Q ss_pred HHHHhHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHH
Q 000924 875 HFWKYKDDTKQANDLASKGDR----EALQHLCVNQVERVLELW 913 (1222)
Q Consensus 875 eFYqnRr~i~KARELAakgdv----eELeelC~aEVEkFMelW 913 (1222)
.|.-.-...++-++.=+.-++ ..||.++..=|-.+..+|
T Consensus 180 ~Yll~i~~aN~~k~~Yy~~~lP~lLd~lQ~l~E~rv~~ln~i~ 222 (234)
T cd07686 180 QYVLAVKGAQLHQHQYYDFTLPLLLDSLQKMQEEMIKALKGIL 222 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444344333 345666666666666666
No 323
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=66.87 E-value=1.4e+02 Score=29.62 Aligned_cols=92 Identities=17% Similarity=0.253 Sum_probs=47.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCH
Q 000924 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRA----SYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISV 741 (1222)
Q Consensus 666 KAKIdeLqKEIeKLnq~RdaI~eELkalRa----ERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSV 741 (1222)
..++..+..++......-..+......+.. ....+...+..|......+......+...++........+. ..
T Consensus 39 l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~---~~ 115 (213)
T cd00176 39 LKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFR---DA 115 (213)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 333445555555444444555544444443 33455566666666666666666666665554433232221 22
Q ss_pred HHHHHHHHHHHHHhhcCCC
Q 000924 742 DDIDGSIRNMEHRIAHETL 760 (1222)
Q Consensus 742 EEIDarIa~LE~RIQTgSL 760 (1222)
-++..-|...+..+.....
T Consensus 116 ~~l~~wl~~~e~~l~~~~~ 134 (213)
T cd00176 116 DDLEQWLEEKEAALASEDL 134 (213)
T ss_pred HHHHHHHHHHHHHhcCccc
Confidence 2266666666666665443
No 324
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=66.42 E-value=76 Score=29.73 Aligned_cols=58 Identities=12% Similarity=0.156 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKK 867 (1222)
Q Consensus 810 KKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRK 867 (1222)
++-++++++.++.+..+++.+.++.+++-.+.+.+.+..+.-.+.-+..+.....+-.
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~ 82 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGE 82 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444443
No 325
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=66.42 E-value=33 Score=35.96 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhh
Q 000924 1092 AALRAQKEAEQKEKEREKRARKKEK 1116 (1222)
Q Consensus 1092 A~~raqKEAEkKeKErEKKAKKK~~ 1116 (1222)
++.|..|-.+|++|.++++.+++..
T Consensus 79 ~eekTaKkR~KR~KkK~kk~~~k~~ 103 (142)
T PF06658_consen 79 AEEKTAKKRAKRQKKKQKKKKKKKK 103 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3566777777777777766666643
No 326
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=66.40 E-value=2.8e+02 Score=32.88 Aligned_cols=30 Identities=7% Similarity=0.303 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHH
Q 000924 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQT 692 (1222)
Q Consensus 663 EeLKAKIdeLqKEIeKLnq~RdaI~eELka 692 (1222)
.+|...+..+..+|..+...|..+...+..
T Consensus 60 ~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~ 89 (384)
T PF03148_consen 60 NELERELEELDEEIDLLEEEKRRLEKALEA 89 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888888888887777777755
No 327
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=66.10 E-value=0.47 Score=45.17 Aligned_cols=15 Identities=47% Similarity=1.181 Sum_probs=5.9
Q ss_pred CchHHHHHHHHHHHH
Q 000924 1188 PSWMWVLIIALVVFA 1202 (1222)
Q Consensus 1188 ~yWmW~~~AAlvVla 1202 (1222)
+.|+|.++.++||+|
T Consensus 65 rrwlwLlikl~lV~a 79 (81)
T PF14812_consen 65 RRWLWLLIKLFLVFA 79 (81)
T ss_dssp ------TTTTHCCHC
T ss_pred chhHHHHHHHHHHhe
Confidence 579999887666644
No 328
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=66.03 E-value=2.6e+02 Score=32.52 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 845 LGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (1222)
Q Consensus 845 QeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYq 878 (1222)
..++..+-.....+|..+.+|..-..+..+ ||+
T Consensus 301 ~~~re~~lq~L~~ay~~y~el~~nl~eG~k-FY~ 333 (353)
T cd09236 301 TKERERALQSLDLAYFKYKEIVSNLDEGRK-FYN 333 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 334455555666667777777776666655 553
No 329
>PLN02678 seryl-tRNA synthetase
Probab=65.82 E-value=44 Score=40.40 Aligned_cols=13 Identities=23% Similarity=0.389 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 000924 769 IREIKQLKQRREQ 781 (1222)
Q Consensus 769 LKEIKQLKKsRKk 781 (1222)
|.+|-+|...|.+
T Consensus 32 id~il~ld~~~r~ 44 (448)
T PLN02678 32 VDEVIALDKEWRQ 44 (448)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 330
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=65.65 E-value=1.8e+02 Score=30.57 Aligned_cols=119 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 768 IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQ 847 (1222)
Q Consensus 768 LLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeE 847 (1222)
+|..|..|.+.++.. -+.+.++..-.++++..+..|..|.--|..-+++-...+.-+.-.+.+...+......-
T Consensus 11 LInrInelQQaKKk~------~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~~ 84 (134)
T PF15233_consen 11 LINRINELQQAKKKS------SEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQTL 84 (134)
T ss_pred HHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC
Q 000924 848 FKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGD 894 (1222)
Q Consensus 848 lkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgd 894 (1222)
+..-. .|-..-..+..|..+++.++. |+.-.+..+..+.|-+.++
T Consensus 85 ~~eck-~R~~fe~qLE~lm~qHKdLwe-fh~~erLa~EI~~l~~sKE 129 (134)
T PF15233_consen 85 LQECK-LRLDFEEQLEDLMGQHKDLWE-FHMPERLAREICALESSKE 129 (134)
T ss_pred hHhHH-HHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhHH
No 331
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=65.42 E-value=1.8e+02 Score=30.51 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 000924 765 EKQIIREIKQLKQRRE 780 (1222)
Q Consensus 765 EKKLLKEIKQLKKsRK 780 (1222)
+++.+.-...|++.+.
T Consensus 2 e~K~l~v~~kLK~~~~ 17 (140)
T PF10473_consen 2 EEKFLHVEEKLKESES 17 (140)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4555555556665543
No 332
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=65.29 E-value=98 Score=28.98 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREE 837 (1222)
Q Consensus 805 QIKaLKKEIDELRkKLkkLeaElKELsKK~DEI 837 (1222)
+|..|..|-..|..+-..+...++.|..++.+.
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~ 45 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKEL 45 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455555666655555555555555555333333
No 333
>PRK11281 hypothetical protein; Provisional
Probab=65.28 E-value=4.9e+02 Score=35.37 Aligned_cols=20 Identities=0% Similarity=0.061 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHHhhcCC
Q 000924 740 SVDDIDGSIRNMEHRIAHET 759 (1222)
Q Consensus 740 SVEEIDarIa~LE~RIQTgS 759 (1222)
-..+...++..+..+++.+.
T Consensus 164 ~lsea~~RlqeI~~~L~~~~ 183 (1113)
T PRK11281 164 ALYANSQRLQQIRNLLKGGK 183 (1113)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 44667778888888887743
No 334
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=65.23 E-value=1.3e+02 Score=38.63 Aligned_cols=30 Identities=7% Similarity=0.056 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000924 678 EKTRSRDAIRDDIQTIRASYKEYAEKLEAA 707 (1222)
Q Consensus 678 KLnq~RdaI~eELkalRaERdELiEQLKeL 707 (1222)
++.+.|.++..+...++..+.++....+.+
T Consensus 519 ~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l 548 (771)
T TIGR01069 519 KLSALEKELEQKNEHLEKLLKEQEKLKKEL 548 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 335
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=64.49 E-value=2.8e+02 Score=32.23 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 000924 766 KQIIREIKQLKQRREQISS 784 (1222)
Q Consensus 766 KKLLKEIKQLKKsRKkViA 784 (1222)
+.+|.++..|+..|..+..
T Consensus 198 r~~l~~l~~lk~eR~~l~~ 216 (339)
T cd09238 198 RSNLEELEALGNERAGIED 216 (339)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3478888888888876533
No 336
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=64.35 E-value=2.9e+02 Score=32.52 Aligned_cols=17 Identities=0% Similarity=0.001 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhHHHHHH
Q 000924 664 NLREQIKAAQSKVDEKT 680 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLn 680 (1222)
..-+++..|++.|..|-
T Consensus 206 ~~la~~a~LE~RL~~LE 222 (388)
T PF04912_consen 206 QQLARAADLEKRLARLE 222 (388)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34466666666665553
No 337
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=64.18 E-value=47 Score=39.55 Aligned_cols=6 Identities=17% Similarity=0.612 Sum_probs=2.1
Q ss_pred HHHHHH
Q 000924 772 IKQLKQ 777 (1222)
Q Consensus 772 IKQLKK 777 (1222)
|.+|++
T Consensus 44 ~~~lr~ 49 (425)
T PRK05431 44 LEELQA 49 (425)
T ss_pred HHHHHH
Confidence 333333
No 338
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=64.08 E-value=65 Score=33.94 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 839 EKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHF 876 (1222)
Q Consensus 839 aEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeF 876 (1222)
.+...+.+++..+.++..++-.++..|++|....+++|
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555555556666667777777777777766654
No 339
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=63.94 E-value=4.1e+02 Score=33.99 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=15.9
Q ss_pred CCCChHHHHHHHHHHHhHHHHHH
Q 000924 658 PRYDDENLREQIKAAQSKVDEKT 680 (1222)
Q Consensus 658 pRPDDEeLKAKIdeLqKEIeKLn 680 (1222)
.++|.+.|+..+++.--+|....
T Consensus 13 k~~dle~LQreLd~~~~~l~~~Q 35 (629)
T KOG0963|consen 13 KRFDLERLQRELDAEATEIAQRQ 35 (629)
T ss_pred HhccHHHHHHHHHHHHHHHHhhh
Confidence 56788888888887666665433
No 340
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=63.82 E-value=1.3e+02 Score=31.71 Aligned_cols=81 Identities=12% Similarity=0.271 Sum_probs=42.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhccC
Q 000924 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRA---SYKEYAEKLEAAISDERSARESLKSKRQEID---SVQSRINMMKNA 738 (1222)
Q Consensus 665 LKAKIdeLqKEIeKLnq~RdaI~eELkalRa---ERdELiEQLKeLReE~KqlReer~EKIKEIk---~LQeaLnKLRnA 738 (1222)
.+.+.+.+..++..++..-...+..|..++. .-.+|..++..|..+.+........++.++. .|..+|.... +
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~ak-a 96 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALKGAK-A 96 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 4444444444444444444444444444443 5556666666666666666666666666555 3444454433 3
Q ss_pred CCHHHHHH
Q 000924 739 ISVDDIDG 746 (1222)
Q Consensus 739 kSVEEIDa 746 (1222)
++...|-.
T Consensus 97 kn~~av~a 104 (155)
T PF06810_consen 97 KNPKAVKA 104 (155)
T ss_pred CCHHHHHH
Confidence 45544443
No 341
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=63.66 E-value=2.9e+02 Score=32.26 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhh
Q 000924 770 REIKQLKQRREQISS 784 (1222)
Q Consensus 770 KEIKQLKKsRKkViA 784 (1222)
..-..|.+.|.++..
T Consensus 74 e~c~~lek~rqKlsh 88 (307)
T PF10481_consen 74 ESCENLEKTRQKLSH 88 (307)
T ss_pred HHHHHHHHHHHHhhH
Confidence 334677777776633
No 342
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=63.59 E-value=45 Score=31.83 Aligned_cols=71 Identities=8% Similarity=0.273 Sum_probs=44.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHhh
Q 000924 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN--AISVDDIDGSIRNMEHRIA 756 (1222)
Q Consensus 686 I~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRn--AkSVEEIDarIa~LE~RIQ 756 (1222)
|+.-++.+|.+-+.+..++..++.+...|...+..++.||..+|..+-.|-. .+--..-+.+|.+|-..++
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777777777788888888888776654421 0122233445555554443
No 343
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=63.35 E-value=3e+02 Score=34.76 Aligned_cols=17 Identities=41% Similarity=0.710 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhh
Q 000924 768 IIREIKQLKQRREQISS 784 (1222)
Q Consensus 768 LLKEIKQLKKsRKkViA 784 (1222)
|=+||+.|++.|.++..
T Consensus 47 LKkEIKKLQRlRdQIKt 63 (575)
T KOG2150|consen 47 LKKEIKKLQRLRDQIKT 63 (575)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34566666666665544
No 344
>COG4499 Predicted membrane protein [Function unknown]
Probab=63.29 E-value=4.4 Score=47.90 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=27.8
Q ss_pred hhhhcccCCCCchHHHHHHHHHHHHHHHhhccccccc
Q 000924 1178 PLRNRGKRRVPSWMWVLIIALVVFALFLLGNSSFSFK 1214 (1222)
Q Consensus 1178 aI~nRkKr~~~yWmW~~~AAlvVlaLfvlGy~y~~~~ 1214 (1222)
++-.|+|-.++.|+=++.++|+|+||.++-|+|||.+
T Consensus 210 a~VpK~k~~ifk~~giGliillvl~li~~~Y~~f~~~ 246 (434)
T COG4499 210 AFVPKKKYTIFKYFGIGLIILLVLLLIYFTYYYFSNQ 246 (434)
T ss_pred eecccccceehhhHHHhHHHHHHHHHHHHHHHHHHcC
Confidence 3444566556777656678899999999999999875
No 345
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=63.20 E-value=4.8e+02 Score=34.56 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=13.6
Q ss_pred chhHHhhhccccccCCCCCchhHHHH
Q 000924 486 RSKELEENMETEFTGEESDDLVCKEV 511 (1222)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (1222)
--|.|-.-+|.+|. ..-+|+.|
T Consensus 388 e~kdLY~iLEveF~----PL~l~k~l 409 (988)
T KOG2072|consen 388 EVKDLYNILEVEFH----PLKLCKKL 409 (988)
T ss_pred HHHHHHHHHHhcCC----HHHHHHHH
Confidence 34666667777774 34467665
No 346
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=62.85 E-value=4.2e+02 Score=33.76 Aligned_cols=21 Identities=14% Similarity=0.089 Sum_probs=9.3
Q ss_pred CCceeeecCCCCChHHHHHHHH
Q 000924 649 QPFYFLVKVPRYDDENLREQIK 670 (1222)
Q Consensus 649 ~~FyYfVKvpRPDDEeLKAKId 670 (1222)
.+...-+.+..+ +|..-+.|.
T Consensus 226 ~s~ii~Is~~~~-dP~~Aa~il 246 (726)
T PRK09841 226 ESGMLELTMTGD-DPQLITRIL 246 (726)
T ss_pred CCCeEEEEEeCC-CHHHHHHHH
Confidence 343233444443 455555553
No 347
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=62.85 E-value=17 Score=47.16 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=7.0
Q ss_pred HHHhHHHHHHHHHHH
Q 000924 876 FWKYKDDTKQANDLA 890 (1222)
Q Consensus 876 FYqnRr~i~KARELA 890 (1222)
|-..|.+.+++|+-.
T Consensus 662 ~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 662 FSEARDIFSQVREAT 676 (1018)
T ss_pred chHHHHHHHHHHHHH
Confidence 344444445555443
No 348
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=62.40 E-value=67 Score=28.66 Aligned_cols=57 Identities=11% Similarity=0.225 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhC
Q 000924 855 RQEAYKHWQSLKKQAYDK-NQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNN 915 (1222)
Q Consensus 855 RDEAYeeIkeLRKERDEk-NkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMelWN~ 915 (1222)
.+..|..+++++++++.. ...+-..+..+.+++.|+...+...+- .++..++..|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d~~~~~----~~~k~l~~~Wk~ 68 (77)
T PF03993_consen 11 CDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESEDWKEAA----EEIKELQQEWKE 68 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH----HHHHHHHHHHHH
Confidence 344444455555544443 235556667778899999888854444 777788888864
No 349
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=61.97 E-value=2.6e+02 Score=35.18 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q 000924 798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKA--------ADEIRQEAYKHWQSL 865 (1222)
Q Consensus 798 QKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkA--------L~EKRDEAYeeIkeL 865 (1222)
+-+.+-.+++.+...|+.++..++. ++....++++.+-.+|..|+.++.. |.++||.+..+|.+|
T Consensus 135 ~A~~La~~f~~~~~~L~~~~~~~n~---~i~~~V~~IN~l~~~IA~LN~~I~~~~~~~~ndLlDqRD~ll~eLS~~ 207 (624)
T PRK12714 135 SGNSLATRFKQLNGQMDSLSNEVNS---GLTSSVDEVNRLTQQIAKINGTIGSSAQNAAPDLLDQRDALVSKLVGY 207 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHhh
Confidence 3344555566666666666664443 4445555555555555555555532 445555555555444
No 350
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=61.67 E-value=3.2e+02 Score=31.97 Aligned_cols=16 Identities=6% Similarity=0.194 Sum_probs=7.7
Q ss_pred eecCCCCChHHHHHHHH
Q 000924 654 LVKVPRYDDENLREQIK 670 (1222)
Q Consensus 654 fVKvpRPDDEeLKAKId 670 (1222)
-+.+.-+ +|++-++|.
T Consensus 135 ~is~~~~-dp~~A~~i~ 150 (444)
T TIGR03017 135 SIEFSGV-DPRFAATVA 150 (444)
T ss_pred EEEEeCC-CHHHHHHHH
Confidence 3444443 455555553
No 351
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=61.49 E-value=2.7e+02 Score=34.28 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=14.9
Q ss_pred cceecccccccccccccccCCC
Q 000924 459 GSVSSIPEDVNVENVGIQHAGG 480 (1222)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~ 480 (1222)
|.+..+..---+-|+.+-|||.
T Consensus 21 Gr~~~~sas~~at~~aa~~agd 42 (575)
T KOG4403|consen 21 GRSLWISASELATNVAAVVAGD 42 (575)
T ss_pred chhhhhHHHHhhcchhhhhcCC
Confidence 6666655555667777788876
No 352
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=61.43 E-value=1e+02 Score=28.79 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 839 EKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQH 875 (1222)
Q Consensus 839 aEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNke 875 (1222)
..+..|..+.+.+-.....+|..+..|+.+...+.+.
T Consensus 26 ~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 26 IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555666666666655554443
No 353
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=61.00 E-value=2.8e+02 Score=35.14 Aligned_cols=68 Identities=4% Similarity=0.045 Sum_probs=37.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 000924 795 AFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK-------AADEIRQEAYKHWQSL 865 (1222)
Q Consensus 795 SidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElk-------AL~EKRDEAYeeIkeL 865 (1222)
.+.+-+.+-.+++.+...|+.++..++. ++.....+++.+-.+|..|+.++. .|.++||.+..+|.+|
T Consensus 135 vl~~A~~La~~fn~~~~~L~~~~~~vn~---qi~~~V~~IN~l~~qIA~LN~qI~~~~g~pNdLlDqRD~ll~eLS~~ 209 (626)
T PRK08871 135 VLEKAKLISQTLNDFHETVRQQKDVTNK---KLDLGVERINQIALEIRDIHRLMMRTPGPHNDLMDQHEKLVKELSQY 209 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHhh
Confidence 3334445555666666666666665443 455555555555566666655553 4445555555555444
No 354
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=60.44 E-value=41 Score=41.15 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=13.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHHH
Q 000924 890 ASKGDREALQHLCVNQVERVLE 911 (1222)
Q Consensus 890 AakgdveELeelC~aEVEkFMe 911 (1222)
.++||..-...-|..-|=++++
T Consensus 116 v~R~~~~~~~~~Y~~~v~~~l~ 137 (489)
T PF05262_consen 116 VYRGDLDYFKKKYKNVVIKNLT 137 (489)
T ss_pred HHcCCHHHHHHHhhHHHHhhcC
Confidence 3466666666666666655554
No 355
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=60.23 E-value=1.6e+02 Score=30.48 Aligned_cols=48 Identities=8% Similarity=0.171 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG 846 (1222)
Q Consensus 799 KEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQe 846 (1222)
|..+..+|..+...+|+..+-....++++.++...+..++.++..++.
T Consensus 63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444555555555555555554444444444444444444444444433
No 356
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=60.22 E-value=2.1e+02 Score=30.86 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHR 835 (1222)
Q Consensus 800 EaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~D 835 (1222)
..+..+|..|..++..|..++..+....+.+.++..
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~ 158 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE 158 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666655555544444444333
No 357
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=60.21 E-value=3.5e+02 Score=32.02 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 830 VKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (1222)
Q Consensus 830 LsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFY 877 (1222)
|..++..+..-|..|+.++..+....+.++..+..|-....-++...|
T Consensus 322 L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~ 369 (384)
T PF03148_consen 322 LIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLF 369 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666666666666666666666555554
No 358
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=60.10 E-value=1.3e+02 Score=29.55 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHH
Q 000924 898 LQHLCVNQVERVLELWNNNDEFRKEY 923 (1222)
Q Consensus 898 LeelC~aEVEkFMelWN~dkeFRkDY 923 (1222)
...|.+.|+..||.......++|.-|
T Consensus 60 ~~~lT~~E~~~ll~~~~~~~~~~~~~ 85 (86)
T PF12958_consen 60 PKDLTNDEFYELLEFLFHLPEVQEAL 85 (86)
T ss_pred chhcCHHHHHHHHHHHHcCHHHHHhh
Confidence 45566899999999999998888755
No 359
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.07 E-value=5.2e+02 Score=33.88 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1222)
Q Consensus 808 aLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDE 871 (1222)
.|.......-.++..+...++.+.|....++=++--+++++.--+..|+=-......-.+|+-+
T Consensus 124 ~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle 187 (769)
T PF05911_consen 124 ELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLE 187 (769)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444444555555555666666666666666666666666666666555555555555544
No 360
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.03 E-value=5.2e+02 Score=33.88 Aligned_cols=15 Identities=13% Similarity=0.178 Sum_probs=9.0
Q ss_pred cCCCCCCCCCCCCCC
Q 000924 936 KTLDGRSLGPDEEAP 950 (1222)
Q Consensus 936 lT~DGR~rnPDEkPp 950 (1222)
.+.|+....|...||
T Consensus 315 ~~~e~~~s~~~~~~~ 329 (769)
T PF05911_consen 315 VSMELSSSQNTSNPP 329 (769)
T ss_pred cccccccccCCCCCC
Confidence 356666666666655
No 361
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=59.88 E-value=4.2e+02 Score=32.82 Aligned_cols=12 Identities=8% Similarity=0.310 Sum_probs=7.2
Q ss_pred HhhhhhHhhhhc
Q 000924 925 NSNIRSTLRRLK 936 (1222)
Q Consensus 925 Krnl~Sl~rRql 936 (1222)
++|+.+...|.-
T Consensus 185 ~~i~~~aiqr~a 196 (514)
T TIGR03319 185 KEILATAIQRYA 196 (514)
T ss_pred HHHHHHHHHhcc
Confidence 556666666653
No 362
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=59.67 E-value=5.6e+02 Score=34.19 Aligned_cols=7 Identities=43% Similarity=1.104 Sum_probs=3.5
Q ss_pred cccCCCc
Q 000924 584 QNDKTCP 590 (1222)
Q Consensus 584 ~~~~~~~ 590 (1222)
..+..||
T Consensus 501 ~~GePCP 507 (1047)
T PRK10246 501 QAGQPCP 507 (1047)
T ss_pred CCCCCcC
Confidence 3345565
No 363
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=59.67 E-value=1.1e+02 Score=36.44 Aligned_cols=60 Identities=12% Similarity=0.364 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHHHHh
Q 000924 723 QEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRREQI 782 (1222)
Q Consensus 723 KEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSL--SLvEEKKLLKEIKQLKKsRKkV 782 (1222)
+.++.|...+..+..+..++.+..++..|+..+....+ ....=.+++++++.|+.....+
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~ 68 (364)
T TIGR00020 7 NRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTL 68 (364)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555565665567899999999999999988876 5666667888888888775554
No 364
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=59.28 E-value=2.4e+02 Score=36.05 Aligned_cols=67 Identities=13% Similarity=0.184 Sum_probs=35.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 000924 796 FDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK----------AADEIRQEAYKHWQSL 865 (1222)
Q Consensus 796 idQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElk----------AL~EKRDEAYeeIkeL 865 (1222)
+.+-+.+-.+++.+...|+.++..++. ++....++++.+-.+|..|+.++. .|.++||.+..+|.+|
T Consensus 133 l~~A~~La~~fn~~~~~L~~l~~~vn~---qI~~~V~~IN~l~~qIA~LN~qI~~~~~~G~~~NdLlDqRD~Ll~eLS~~ 209 (676)
T PRK05683 133 LTQAQGLSKRFNSLSSQLNQQNSNINS---QLSAMTDQVNNLTTSIASYNKQIAQASASGATPNDLLDARDEAVRQLNEL 209 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHhHHHHHHHHHHHHhh
Confidence 333445555666666666666665443 455555555555555555555543 3344555555444443
No 365
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=59.13 E-value=70 Score=38.01 Aligned_cols=75 Identities=15% Similarity=0.363 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000924 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY------KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM 734 (1222)
Q Consensus 661 DDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaER------dELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnK 734 (1222)
+.+.++.++..+..++++++.....|...+..++... .+...+++.++..+..+...+.+...++..|++.+..
T Consensus 328 ~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 328 DRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4468888888888888888888888877776665422 2344555555555566666666666666666665544
Q ss_pred h
Q 000924 735 M 735 (1222)
Q Consensus 735 L 735 (1222)
+
T Consensus 408 ~ 408 (451)
T PF03961_consen 408 S 408 (451)
T ss_pred h
Confidence 3
No 366
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=58.69 E-value=1.7e+02 Score=36.53 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAA 851 (1222)
Q Consensus 800 EaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL 851 (1222)
+.+-.+|+..-..|..+++.++. ++....++++.+-.+|.+|++++..+
T Consensus 141 ~~l~~~in~~~~~L~~l~~~i~~---~I~~~V~~vNsLl~qIa~lN~qI~~~ 189 (552)
T COG1256 141 QTLVNQINNTYEQLTDLRKDINA---EIAATVDEVNSLLKQIADLNKQIRKV 189 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666665444 55555655555555555555554433
No 367
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=58.65 E-value=1.4e+02 Score=35.66 Aligned_cols=60 Identities=10% Similarity=0.393 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHHHHh
Q 000924 723 QEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRREQI 782 (1222)
Q Consensus 723 KEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSL--SLvEEKKLLKEIKQLKKsRKkV 782 (1222)
+.++.|...+..+..+-.++.+..++..|+..+....+ ....=.+++++++.|+..-..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~ 68 (367)
T PRK00578 7 ERLKDLDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTL 68 (367)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555565555567888999999999999987765 4555556777777777664444
No 368
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=58.34 E-value=1.3e+02 Score=27.70 Aligned_cols=50 Identities=18% Similarity=0.475 Sum_probs=30.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 681 RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (1222)
Q Consensus 681 q~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQe 730 (1222)
.++..|..+|...+..--.+-.+|++...+.+.+...+....++|+.+|.
T Consensus 11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445666666666666666666666666666666666666666666553
No 369
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.22 E-value=1e+02 Score=29.58 Aligned_cols=12 Identities=33% Similarity=0.636 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 000924 808 FLRKEADSLREN 819 (1222)
Q Consensus 808 aLKKEIDELRkK 819 (1222)
.|.-|+++|+.+
T Consensus 22 LLQmEieELKEk 33 (79)
T COG3074 22 LLQMEIEELKEK 33 (79)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 370
>PRK11519 tyrosine kinase; Provisional
Probab=58.07 E-value=5e+02 Score=33.08 Aligned_cols=9 Identities=22% Similarity=0.195 Sum_probs=4.7
Q ss_pred hHHHHHHHH
Q 000924 662 DENLREQIK 670 (1222)
Q Consensus 662 DEeLKAKId 670 (1222)
||.+-+.|.
T Consensus 238 dP~~Aa~ia 246 (719)
T PRK11519 238 DREQIRDIL 246 (719)
T ss_pred CHHHHHHHH
Confidence 455555553
No 371
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=58.06 E-value=3.3 Score=50.74 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000924 700 YAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1222)
Q Consensus 700 LiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL 735 (1222)
|..++..|+.++..++....+.+++++.|+..+..+
T Consensus 82 L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l 117 (619)
T PF03999_consen 82 LKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQL 117 (619)
T ss_dssp ------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777777777777777777776665544
No 372
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=58.02 E-value=3.1e+02 Score=30.64 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000924 817 RENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD-------EIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDL 889 (1222)
Q Consensus 817 RkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~-------EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KAREL 889 (1222)
.+.+...-..+....++|+..-.++...+.+.+... .+.+++-.++.............|......+
T Consensus 125 qk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~------ 198 (258)
T cd07655 125 QKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEKALEDL------ 198 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 333333334455555566655555555544443322 3334444444444444433333333222222
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhh
Q 000924 890 ASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRR 934 (1222)
Q Consensus 890 AakgdveELeelC~aEVEkFMelWN~dkeFRkDYeKrnl~Sl~rR 934 (1222)
..++..+..+|..+...+-.-.+-|-.+.|.+++....=
T Consensus 199 ------n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~ 237 (258)
T cd07655 199 ------NKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRH 237 (258)
T ss_pred ------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233446788888888999999999999999999998774
No 373
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.85 E-value=3.6e+02 Score=31.42 Aligned_cols=106 Identities=8% Similarity=0.160 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHH
Q 000924 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVD 742 (1222)
Q Consensus 663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVE 742 (1222)
+.++.-|+.+...++++.+.-..+.....+.+.-|+.|...+..++.+ -..+..|++.++.........+.+..
T Consensus 43 e~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~----a~~Ik~kL~~~e~~~~~~~~~~~~~~-- 116 (297)
T KOG0810|consen 43 EEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRR----ARKIKTKLKALEKENEADETQNRSSA-- 116 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccccCCCCc--
Confidence 445555555555555554444333333334444455544444444443 33344444444443333322221111
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 000924 743 DIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISS 784 (1222)
Q Consensus 743 EIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViA 784 (1222)
+.++ ++.||+.++ |++..-|...++.+....+
T Consensus 117 --~~r~----rrtq~~~~~----kkf~~~M~~f~~~~~~~r~ 148 (297)
T KOG0810|consen 117 --GLRT----RRTQTSALS----KKLKELMNEFNRTQSKYRE 148 (297)
T ss_pred --cchh----HHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 1222 245566665 8999999998888776543
No 374
>PRK11546 zraP zinc resistance protein; Provisional
Probab=57.83 E-value=81 Score=33.22 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000924 855 RQEAYKHWQSLKKQAYD 871 (1222)
Q Consensus 855 RDEAYeeIkeLRKERDE 871 (1222)
+.++..+|..||.++++
T Consensus 91 I~aL~kEI~~Lr~kL~e 107 (143)
T PRK11546 91 INAVAKEMENLRQSLDE 107 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444443333
No 375
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=57.78 E-value=4.9e+02 Score=33.19 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=10.5
Q ss_pred hhhcCCCCCCCCCCCCC
Q 000924 933 RRLKTLDGRSLGPDEEA 949 (1222)
Q Consensus 933 rRqlT~DGR~rnPDEkP 949 (1222)
.-.-..+-|+.+|-.-|
T Consensus 400 ~a~~~~~~rIid~A~~p 416 (726)
T PRK09841 400 KSSAIGNVRIIDPAVTQ 416 (726)
T ss_pred hccCCCceeeccCCCCC
Confidence 33344677888777644
No 376
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=57.77 E-value=1.4e+02 Score=36.17 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 840 KLKRLLGQFKAADEIRQEAYKHWQSLKK 867 (1222)
Q Consensus 840 EI~ELQeElkAL~EKRDEAYeeIkeLRK 867 (1222)
++.++..++.++..++.++-+++..|+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 139 EIERLLTEDREAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 377
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=57.26 E-value=2.9e+02 Score=30.11 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRL 844 (1222)
Q Consensus 798 QKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~EL 844 (1222)
++....+++..|..+++.++..+..++..+..+..++.+.+.+-..|
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l 139 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKAL 139 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443333333333333
No 378
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=57.24 E-value=63 Score=40.06 Aligned_cols=66 Identities=21% Similarity=0.172 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 808 FLRKEADSLRENVIKAEAATQAVKKLHREE-------SEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN 873 (1222)
Q Consensus 808 aLKKEIDELRkKLkkLeaElKELsKK~DEI-------kaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkN 873 (1222)
.+++++..+.+++.+++.++.++..++.+- ..++.++.+++.++....+++|.+|.+|-.++.+.+
T Consensus 560 ~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 560 PLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444454444444221 125777888888888888888888888877665543
No 379
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=57.12 E-value=92 Score=38.69 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 826 ATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQ 863 (1222)
Q Consensus 826 ElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIk 863 (1222)
++++|.+.+....+.+..+..++....+.....+.++.
T Consensus 220 e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 220 EFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 380
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.04 E-value=2e+02 Score=28.21 Aligned_cols=9 Identities=33% Similarity=0.708 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 000924 769 IREIKQLKQ 777 (1222)
Q Consensus 769 LKEIKQLKK 777 (1222)
+.+.++|+.
T Consensus 9 ~~~~q~~q~ 17 (110)
T TIGR02338 9 LAQLQQLQQ 17 (110)
T ss_pred HHHHHHHHH
Confidence 333333333
No 381
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=57.02 E-value=3.7e+02 Score=31.25 Aligned_cols=19 Identities=11% Similarity=0.539 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 000924 766 KQIIREIKQLKQRREQISS 784 (1222)
Q Consensus 766 KKLLKEIKQLKKsRKkViA 784 (1222)
+.+|.++..|+..|..++.
T Consensus 204 ~~ll~~l~~lk~eR~~~~~ 222 (356)
T cd09237 204 EELLEDLNLIKEERQRVLK 222 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677777777777766533
No 382
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=56.62 E-value=45 Score=31.90 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 803 EEKMKFLRKEADSLRENVIKAEAAT---QAVKKLHREESEKLKRLLGQFKAAD 852 (1222)
Q Consensus 803 qEQIKaLKKEIDELRkKLkkLeaEl---KELsKK~DEIkaEI~ELQeElkAL~ 852 (1222)
.+.|+++..+.++|+..++.++..+ .+|.+|++.....+..++.+...+.
T Consensus 10 r~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 10 RQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443322 2355566666666666655444443
No 383
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=56.47 E-value=3.3e+02 Score=30.51 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000924 818 ENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQ----------EAYKHWQSLKKQAYDKNQHFWKYKDDTKQAN 887 (1222)
Q Consensus 818 kKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRD----------EAYeeIkeLRKERDEkNkeFYqnRr~i~KAR 887 (1222)
.++...-.++....+.|.....+-.....+++.+...+. ..+..+..+++..++....|.+..-.+.+||
T Consensus 124 ~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~k~~~~~~~~~~~~~~~~~~~~~~eK~k~k~~~~~~k~~~ak 203 (241)
T cd07656 124 DELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKCTKAR 203 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445555555555555555555555554444 2344455566666666666666666666666
Q ss_pred -HH
Q 000924 888 -DL 889 (1222)
Q Consensus 888 -EL 889 (1222)
+|
T Consensus 204 NeY 206 (241)
T cd07656 204 NEY 206 (241)
T ss_pred HHH
Confidence 44
No 384
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=56.46 E-value=85 Score=32.41 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHH
Q 000924 740 SVDDIDGSIRNMEH 753 (1222)
Q Consensus 740 SVEEIDarIa~LE~ 753 (1222)
.+..|+.+|.+||+
T Consensus 111 ~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 111 MVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHHHHhc
Confidence 44445555555554
No 385
>PLN02320 seryl-tRNA synthetase
Probab=56.40 E-value=51 Score=40.51 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000924 678 EKTRSRDAIRDDIQTIRASYKEYAEKLE 705 (1222)
Q Consensus 678 KLnq~RdaI~eELkalRaERdELiEQLK 705 (1222)
.+.+.|.++..++..+|++|+.+..+++
T Consensus 97 ~ld~~~r~~~~~~~~lr~ern~~sk~i~ 124 (502)
T PLN02320 97 ELYENMLALQKEVERLRAERNAVANKMK 124 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555543
No 386
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=55.90 E-value=1.7e+02 Score=27.48 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000924 826 ATQAVKKLHREESEKLKRL 844 (1222)
Q Consensus 826 ElKELsKK~DEIkaEI~EL 844 (1222)
.+..+.++++....++..|
T Consensus 48 ~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 48 QIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344333
No 387
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.84 E-value=4.8e+02 Score=32.18 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=21.9
Q ss_pred HHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 000924 875 HFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELW 913 (1222)
Q Consensus 875 eFYqnRr~i~KARELAakgdveELeelC~aEVEkFMelW 913 (1222)
.||+++..+.-.+-. -++...+.++|..|+.-+-...
T Consensus 185 e~~e~~e~~~s~~~~--~k~~k~~ae~~~qq~q~~a~~~ 221 (438)
T COG4487 185 EFKENEEQRESKWAI--LKKLKRRAELGSQQVQGEALEL 221 (438)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHhc
Confidence 566666655433322 2444566778888887776544
No 388
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=55.67 E-value=6.4e+02 Score=33.57 Aligned_cols=31 Identities=13% Similarity=0.039 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 000924 742 DDIDGSIRNMEHRIAHETLPLKEEKQIIREI 772 (1222)
Q Consensus 742 EEIDarIa~LE~RIQTgSLSLvEEKKLLKEI 772 (1222)
=+.|-.|..|-.+....|-.+.++-.-|..|
T Consensus 1128 iekDmcaselfneheeeS~ifdaa~nKiaki 1158 (1424)
T KOG4572|consen 1128 IEKDMCASELFNEHEEESGIFDAAGNKIAKI 1158 (1424)
T ss_pred cchhHHHHHHHHHhhhhcchHHHHHHHHHHH
Confidence 3557777778888888888888876655554
No 389
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=55.59 E-value=3.1e+02 Score=30.02 Aligned_cols=13 Identities=8% Similarity=0.383 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 000924 742 DDIDGSIRNMEHR 754 (1222)
Q Consensus 742 EEIDarIa~LE~R 754 (1222)
.+.-..|..||..
T Consensus 35 ~~~~k~L~~lE~~ 47 (204)
T PF10368_consen 35 KEQQKKLNELEKK 47 (204)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444443
No 390
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=55.57 E-value=1.5e+02 Score=27.85 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 000924 803 EEKMKFLRKEADSL 816 (1222)
Q Consensus 803 qEQIKaLKKEIDEL 816 (1222)
..+|..+..++..+
T Consensus 34 ~~~i~~~~~~L~~~ 47 (92)
T PF14712_consen 34 LQQIDRLNEKLKEL 47 (92)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 391
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=55.50 E-value=49 Score=34.83 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000924 809 LRKEADSLRENVIKAEAATQAVK 831 (1222)
Q Consensus 809 LKKEIDELRkKLkkLeaElKELs 831 (1222)
+..|+..+++++.+.+.++++++
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~Lk 181 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALK 181 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333344444
No 392
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=55.44 E-value=92 Score=28.48 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 826 ATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHW 862 (1222)
Q Consensus 826 ElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeI 862 (1222)
.+..|+.+++.+..+|+.++....++.++=..+...|
T Consensus 11 dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 11 DVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555444444444433333333
No 393
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=55.42 E-value=2.7e+02 Score=29.29 Aligned_cols=21 Identities=43% Similarity=0.457 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 000924 764 EEKQIIREIKQLKQRREQISS 784 (1222)
Q Consensus 764 EEKKLLKEIKQLKKsRKkViA 784 (1222)
|||+-.+|+..|...+..+..
T Consensus 31 E~KRgdRE~~~L~~~~~~~~e 51 (145)
T PF14942_consen 31 EEKRGDREVRVLENLTEMISE 51 (145)
T ss_pred HHccCcHHHHHHHHHHHHHHH
Confidence 578888888888888776633
No 394
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.41 E-value=2.6e+02 Score=36.07 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=9.4
Q ss_pred ccccccCCCC-CCCccccc
Q 000924 596 RGIQLTGGED-GDRTFQDV 613 (1222)
Q Consensus 596 ~~~~~~~~~~-~~~~~~~~ 613 (1222)
+.+-|||-.. |--||-..
T Consensus 323 ~~liItGpNg~GKSTlLK~ 341 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKT 341 (771)
T ss_pred eEEEEECCCCCCchHHHHH
Confidence 5566777544 33444433
No 395
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=55.38 E-value=2.4e+02 Score=28.68 Aligned_cols=57 Identities=19% Similarity=0.415 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 796 FDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD 852 (1222)
Q Consensus 796 idQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~ 852 (1222)
+..++.+.+++..+..++..+...+..++..+..+..++.....+...++.+++.+.
T Consensus 51 ~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 51 MEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777776666655555555444444444444444443333
No 396
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=55.13 E-value=1.1e+02 Score=36.18 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 000924 678 EKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD-ERSARESLKSKRQEIDSVQSRINMM 735 (1222)
Q Consensus 678 KLnq~RdaI~eELkalRaERdELiEQLKeLReE-~KqlReer~EKIKEIk~LQeaLnKL 735 (1222)
.+......|..+...+.++..+++....++-.+ +..+...+++|...|+.|+..|..+
T Consensus 148 ~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~ 206 (342)
T PF06632_consen 148 HLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASA 206 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 333333334444444444444444433333333 2556666677777777777666543
No 397
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=55.06 E-value=11 Score=45.15 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=9.4
Q ss_pred CCCCCCCccccCCCccc
Q 000924 1148 ELRDKPSTATKKPKKAS 1164 (1222)
Q Consensus 1148 e~~Ekp~~~kkK~~k~s 1164 (1222)
+.+.||.+.|++++|.+
T Consensus 2 ~~~~K~kplk~~~kr~~ 18 (416)
T PF04415_consen 2 EQPPKPKPLKKPSKRSS 18 (416)
T ss_pred CCCCCCCCCCCCCcccc
Confidence 34567777665554333
No 398
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=54.86 E-value=5.5e+02 Score=32.56 Aligned_cols=34 Identities=9% Similarity=0.111 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000924 857 EAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLA 890 (1222)
Q Consensus 857 EAYeeIkeLRKERDEkNkeFYqnRr~i~KARELA 890 (1222)
....+...|.++.......|.+.-..+.+.|.-+
T Consensus 339 ~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~ 372 (557)
T COG0497 339 NSEESLEALEKEVKKLKAELLEAAEALSAIRKKA 372 (557)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666665555555555444
No 399
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=54.48 E-value=1.4e+02 Score=32.53 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 1088 AQTRAALRAQKEAEQKEKEREKRA 1111 (1222)
Q Consensus 1088 aaa~A~~raqKEAEkKeKErEKKA 1111 (1222)
....|.++||-+|++.-+|+|+..
T Consensus 111 Qkeeae~ka~EeAek~r~ErE~~~ 134 (171)
T PF05672_consen 111 QKEEAEAKAREEAEKQRKERERIM 134 (171)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677888888888888776653
No 400
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=54.35 E-value=56 Score=32.65 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVK 831 (1222)
Q Consensus 799 KEaIqEQIKaLKKEIDELRkKLkkLeaElKELs 831 (1222)
...+.++|..|-.++.+|+..+..+-++-..|.
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555554444433333333
No 401
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=54.00 E-value=2.2e+02 Score=27.79 Aligned_cols=94 Identities=9% Similarity=0.261 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCH
Q 000924 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISV 741 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSV 741 (1222)
...|..+.......-..+......|...-..++..-..+..=|+....+..........-.+........|.+|. ..+
T Consensus 13 ~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~--~~l 90 (126)
T PF13863_consen 13 QLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLK--AEL 90 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q ss_pred HHHHHHHHHHHHHhhc
Q 000924 742 DDIDGSIRNMEHRIAH 757 (1222)
Q Consensus 742 EEIDarIa~LE~RIQT 757 (1222)
+.|...|..|+..++.
T Consensus 91 ~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 91 EELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHH
No 402
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=53.97 E-value=4.1e+02 Score=33.82 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK 849 (1222)
Q Consensus 798 QKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElk 849 (1222)
+-+.+-.+++.+...|+.++..++. +++...++++.+-.+|..|+.++.
T Consensus 136 ~a~~La~~fn~~~~~L~~~~~~~n~---~I~~~V~~IN~l~~qIA~LN~~I~ 184 (651)
T PRK06945 136 NAQTLASQFNAAGQQLDQLRQSVNT---QLTSSVTQINSYTKQIAQLNDQIA 184 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666664433 444555455555555555554443
No 403
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=53.78 E-value=5.8e+02 Score=32.54 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=25.5
Q ss_pred cccchhhhcccccCCCcceecccccccccccccccc
Q 000924 385 QRTEPEVLQGGIDGVDERSISVDNAAVESCTSESVY 420 (1222)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (1222)
.+..-+|++++..|-+-|-|-+-|---++--|-|++
T Consensus 178 v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF 213 (607)
T KOG0240|consen 178 VSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIF 213 (607)
T ss_pred ecCHHHHHHHHhcccccchhhhccccccccccceEE
Confidence 345567788888887777777777777777776663
No 404
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=53.38 E-value=2e+02 Score=26.98 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 000924 769 IREIKQLKQR 778 (1222)
Q Consensus 769 LKEIKQLKKs 778 (1222)
+.++..|+..
T Consensus 4 ~~~~~~l~~~ 13 (106)
T PF01920_consen 4 QNKFQELNQQ 13 (106)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 405
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=53.17 E-value=2.6e+02 Score=32.07 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 000924 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYK----HWQSLKKQAYDKNQ 874 (1222)
Q Consensus 800 EaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYe----eIkeLRKERDEkNk 874 (1222)
+.+-.+|+.+...|+.++..++. +++...++++.+-.+|..| +.++..+.. .-..|+.+||.+-+
T Consensus 137 ~~l~~~~n~~~~~L~~~~~~~~~---~i~~~V~~iN~ll~~Ia~l-------N~~I~~~~~~~g~~~n~L~DqRD~ll~ 205 (322)
T TIGR02492 137 QALANSFNQTSNELQDLRKGINA---EIKSAVTEINSLLKQIASL-------NKEIQQVEAKSGQDANDLLDQRDLLLK 205 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HHHHHHHhccCCCCchHhHHHHHHHHH
Confidence 34455666666666666665433 3444444444444444444 444433322 35668888887544
No 406
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=53.12 E-value=3.5e+02 Score=29.85 Aligned_cols=32 Identities=6% Similarity=0.016 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHhhhhhHhh
Q 000924 902 CVNQVERVLELWNNNDEFRKEYVNSNIRSTLR 933 (1222)
Q Consensus 902 C~aEVEkFMelWN~dkeFRkDYeKrnl~Sl~r 933 (1222)
...+|..+...+-.-.+-|=++.|.+++....
T Consensus 180 ~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~ 211 (261)
T cd07648 180 FETKMTDSCKRFQEIEESHLRQMKEFLASYAE 211 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556667788888888877554
No 407
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.05 E-value=2.8e+02 Score=33.22 Aligned_cols=112 Identities=13% Similarity=0.242 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------H
Q 000924 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDS---------------V 728 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~---------------L 728 (1222)
..++++..+.++...++..-..|+.-.++++..+..|-.++-.|.....-+.....+-+..++. |
T Consensus 222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~~~~~~l 301 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAIECTAPL 301 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhhhccchH
Confidence 6778888888888888877777777777777777777777766655543333333221111111 1
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHh
Q 000924 729 QSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI 782 (1222)
Q Consensus 729 QeaLnKLRnAkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkV 782 (1222)
-..+ +.++--...|++.|..|+.-.+-|+|.|.. .|+....| +|++|
T Consensus 302 ~kq~--l~~~A~d~aieD~i~~L~~~~r~G~i~l~~---yLr~VR~l--sReQF 348 (365)
T KOG2391|consen 302 YKQI--LECYALDLAIEDAIYSLGKSLRDGVIDLDQ---YLRHVRLL--SREQF 348 (365)
T ss_pred HHHH--HHhhhhhhHHHHHHHHHHHHHhcCeeeHHH---HHHHHHHH--HHHHH
Confidence 0000 111124456788899999999999999975 45544444 46666
No 408
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=52.98 E-value=46 Score=34.83 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=17.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHh
Q 000924 759 TLPLKEEKQIIREIKQLKQRREQI 782 (1222)
Q Consensus 759 SLSLvEEKKLLKEIKQLKKsRKkV 782 (1222)
+-...+++++.+||.+|++....+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~i 59 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAI 59 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccccHHHHHHHHHHHHHHHHHHcC
Confidence 445678888888888888886655
No 409
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=52.76 E-value=4.5e+02 Score=30.95 Aligned_cols=70 Identities=11% Similarity=0.183 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHH
Q 000924 844 LLGQFKAADEIRQEAYKHWQSLKKQAYD---KNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFR 920 (1222)
Q Consensus 844 LQeElkAL~EKRDEAYeeIkeLRKERDE---kNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMelWN~dkeFR 920 (1222)
.+++++++...+++....+..|.+++.. +....|+. ....|+.....++......|..-+..|
T Consensus 81 ~~~r~~~~~~i~~~~~~q~~~l~~~~~~~~~~s~~~y~~--------------~~~~l~~~l~~~l~~~~~~y~~~d~~q 146 (332)
T TIGR01541 81 QRERLDARLQIDRTFRKQQRDLNKAMTAKGLAGSDLYKE--------------QLAAIKAALNEALAELHAYYAAEDALQ 146 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555432 22233322 223344444555566666677777777
Q ss_pred HHHHHhh
Q 000924 921 KEYVNSN 927 (1222)
Q Consensus 921 kDYeKrn 927 (1222)
.+|+---
T Consensus 147 ~dw~~G~ 153 (332)
T TIGR01541 147 GDWLAGA 153 (332)
T ss_pred hhHHHHH
Confidence 7776553
No 410
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=52.58 E-value=56 Score=31.61 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 807 KFLRKEADSLRENVIKAEAATQAVKKLHREESEKLK 842 (1222)
Q Consensus 807 KaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ 842 (1222)
+.+.+.++.+.+.++.+...++.+.++++.+...|.
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444434433
No 411
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=52.54 E-value=1.8e+02 Score=36.96 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 000924 798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK------AADEIRQEAYKHWQSL 865 (1222)
Q Consensus 798 QKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElk------AL~EKRDEAYeeIkeL 865 (1222)
+-+.+-.+++.+...|+.++..++. ++....++++.+-++|.+|+.++. .|.++||.+..+|.+|
T Consensus 135 ~A~~L~~~fn~~~~~L~~~~~~~n~---~I~~~V~~iN~l~~qIA~LN~qI~~~~~~ndLlDqRD~ll~eLS~~ 205 (649)
T PRK12715 135 QSQLLAQQFNSLQTKLEEYERNSTL---QVTESVKIINRITKELAEVNGKLLGNNNIPELLDHRDELLKQLSGY 205 (649)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHhHHHHHHHHHHHHhh
Confidence 3345555666666666666664443 444445555555555555555442 3445555555555444
No 412
>PRK09343 prefoldin subunit beta; Provisional
Probab=52.43 E-value=2.6e+02 Score=28.18 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHh
Q 000924 770 REIKQLKQRREQI 782 (1222)
Q Consensus 770 KEIKQLKKsRKkV 782 (1222)
.+|.+|+..+.++
T Consensus 11 ~~~~~~q~lq~~l 23 (121)
T PRK09343 11 AQLAQLQQLQQQL 23 (121)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 413
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=52.39 E-value=2.7e+02 Score=28.22 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000924 827 TQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDD 882 (1222)
Q Consensus 827 lKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~ 882 (1222)
++.+..-.+.++..|..|+..++-+..+.-+-|+++..+..++..++.----.|+.
T Consensus 67 ~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~ 122 (132)
T PF10392_consen 67 IEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSV 122 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566777788888988888899999999999999999888877744433333
No 414
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.34 E-value=2.4e+02 Score=33.69 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000924 767 QIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLREN 819 (1222)
Q Consensus 767 KLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkK 819 (1222)
++..+++.|++.-+.+... + ++....+++|..++..|.+.+|-|..+
T Consensus 229 ~~~aeq~slkRt~EeL~~G---~---~kL~~~~etLEqq~~~L~~niDIL~~k 275 (365)
T KOG2391|consen 229 RLQAEQESLKRTEEELNIG---K---QKLVAMKETLEQQLQSLQKNIDILKSK 275 (365)
T ss_pred HHHHHHHHHHhhHHHHHhh---H---HHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3455566666665544221 1 112223344444444455555544443
No 415
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=52.31 E-value=2.3e+02 Score=35.62 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=14.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHH
Q 000924 892 KGDREALQHLCVNQVERVLELW 913 (1222)
Q Consensus 892 kgdveELeelC~aEVEkFMelW 913 (1222)
.|.+.+|-.+-...+-.+|..+
T Consensus 279 gG~L~gll~~rd~~l~~~~~~L 300 (627)
T PRK06665 279 TGKLGALIELRDTDIRDEINEL 300 (627)
T ss_pred CcchHhHHHHHHhhHHHHHHHH
Confidence 4677777776666666666555
No 416
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=52.30 E-value=2.2e+02 Score=34.50 Aligned_cols=46 Identities=4% Similarity=0.008 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQF 848 (1222)
Q Consensus 800 EaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeEl 848 (1222)
+.+-++|+.+...|+.++..++. ++....++++.+-.+|..|+.++
T Consensus 132 ~~L~~~~n~~~~~L~~~~~~~~~---~i~~~V~~iN~l~~~Ia~LN~~I 177 (483)
T PRK07521 132 QDLANSLNDASDAVQSARADADA---EIADSVDTLNDLLAQFEDANNAV 177 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666654433 34444444444444555554444
No 417
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=52.23 E-value=3.8e+02 Score=30.00 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=33.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 795 AFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK 849 (1222)
Q Consensus 795 SidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElk 849 (1222)
.+..+..+.+.++.+...+..+......++..+..+..+|.+++.++..+.....
T Consensus 90 al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 90 ALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666666666666666555544433
No 418
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=52.20 E-value=3.4e+02 Score=29.35 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 829 AVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1222)
Q Consensus 829 ELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNk 874 (1222)
-..+.+..++..|+..+.+++.|....+++-.+....-+++.++|+
T Consensus 81 P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknk 126 (159)
T PF04949_consen 81 PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNK 126 (159)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777776666665555555555555554
No 419
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=52.10 E-value=6.6e+02 Score=32.74 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 763 KEEKQIIREIKQLKQRREQI-SSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKL 841 (1222)
Q Consensus 763 vEEKKLLKEIKQLKKsRKkV-iAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI 841 (1222)
.-|..+..++..|+.....- ..|...-.......-++..+..+...+.-++..+...++..+..-..+-+.+..+...-
T Consensus 464 ~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~ 543 (786)
T PF05483_consen 464 ESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETN 543 (786)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777765431 12222222222222234444444444444444444444444333333444444443333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000924 842 KRLLGQFKAADEIRQEAY 859 (1222)
Q Consensus 842 ~ELQeElkAL~EKRDEAY 859 (1222)
..|.+++..+++.....+
T Consensus 544 ~~Lrneles~~eel~~k~ 561 (786)
T PF05483_consen 544 TQLRNELESVKEELKQKG 561 (786)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334333333333333333
No 420
>PRK01844 hypothetical protein; Provisional
Probab=51.90 E-value=12 Score=35.32 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=15.2
Q ss_pred CchHHHHHHHHHHHHHHHhhcc
Q 000924 1188 PSWMWVLIIALVVFALFLLGNS 1209 (1222)
Q Consensus 1188 ~yWmW~~~AAlvVlaLfvlGy~ 1209 (1222)
+.|+|+++.++.+++-+++|++
T Consensus 2 ~~~~~I~l~I~~li~G~~~Gff 23 (72)
T PRK01844 2 PIWLGILVGVVALVAGVALGFF 23 (72)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 5799987766666666666665
No 421
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.66 E-value=2.4e+02 Score=36.53 Aligned_cols=8 Identities=38% Similarity=0.729 Sum_probs=3.7
Q ss_pred eeeCcccc
Q 000924 572 VVNGGIKF 579 (1222)
Q Consensus 572 ~~~~~~~~ 579 (1222)
|.|+.+.|
T Consensus 462 v~~~~~~~ 469 (782)
T PRK00409 462 VENASVEF 469 (782)
T ss_pred eEEEEEEE
Confidence 34544444
No 422
>PLN03188 kinesin-12 family protein; Provisional
Probab=51.58 E-value=8.5e+02 Score=33.81 Aligned_cols=75 Identities=9% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HhCChHH
Q 000924 841 LKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLEL-WNNNDEF 919 (1222)
Q Consensus 841 I~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMel-WN~dkeF 919 (1222)
|+.|..++-+|+.+|.+ ++.-||++-..+...+-.-=.+..+|=+|.-+ .++.++...-.=+|||.. .-+.+.|
T Consensus 1157 ~~alaae~s~l~~erek---er~~~~~enk~l~~qlrdtaeav~aagellvr--l~eaeea~~~a~~r~~~~eqe~~~~~ 1231 (1320)
T PLN03188 1157 INALAAEISALKVEREK---ERRYLRDENKSLQAQLRDTAEAVQAAGELLVR--LKEAEEALTVAQKRAMDAEQEAAEAY 1231 (1320)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555443 22233443333333333333344455555332 345555555555666654 3344455
Q ss_pred H
Q 000924 920 R 920 (1222)
Q Consensus 920 R 920 (1222)
.
T Consensus 1232 k 1232 (1320)
T PLN03188 1232 K 1232 (1320)
T ss_pred H
Confidence 4
No 423
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=51.44 E-value=1.7e+02 Score=36.13 Aligned_cols=47 Identities=26% Similarity=0.307 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 806 MKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAY 859 (1222)
Q Consensus 806 IKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAY 859 (1222)
|+.|-.++.++|+++..+..+-+.+. ++-..|+++.+.++.+++.+.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~-------~eN~~L~~r~~~id~~i~~av 107 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALK-------AENERLQKREQSIDQQIQQAV 107 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhHHHHHHHHH
Confidence 33444444444444444333333333 333334444444444444444
No 424
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.99 E-value=58 Score=39.34 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=10.6
Q ss_pred HHHHhhhHHHHHHHHHH--HHHHHHH
Q 000924 1049 KAEEKRKEEATAKLREQ--RRLEEKA 1072 (1222)
Q Consensus 1049 k~~~~~~e~~~ak~kE~--kr~Ee~~ 1072 (1222)
|...+|+.++++-+|+. .|+|..+
T Consensus 367 kt~~~RQ~~~e~~~K~th~~rqEaaQ 392 (440)
T KOG2357|consen 367 KTDKNRQRVEEEFLKLTHAARQEAAQ 392 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555444444443 4444333
No 425
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=50.89 E-value=2.9e+02 Score=33.82 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQF 848 (1222)
Q Consensus 801 aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeEl 848 (1222)
.+-.+|+.+...|+.++..++. ++.....+++.+-.+|..|+.++
T Consensus 150 ~La~~~n~~~~~L~~~~~~~~~---~i~~~V~~iN~ll~~Ia~LN~~I 194 (507)
T PRK07739 150 ALAETFNYLSQSLTDIQNDLKS---EIDVTVKEINSLASQISDLNKQI 194 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666654333 34444444444444444444444
No 426
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.82 E-value=95 Score=34.22 Aligned_cols=7 Identities=0% Similarity=-0.614 Sum_probs=3.6
Q ss_pred hhhhcCC
Q 000924 1031 EAKEEVP 1037 (1222)
Q Consensus 1031 ~~~~e~P 1037 (1222)
+-.+-+-
T Consensus 82 FHvYR~l 88 (213)
T KOG4055|consen 82 FHVYRHL 88 (213)
T ss_pred hHHHHHH
Confidence 5555553
No 427
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=50.81 E-value=5.3e+02 Score=31.21 Aligned_cols=196 Identities=21% Similarity=0.239 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHh-HHHHHHHHHHHHHHHHHHH
Q 000924 740 SVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFD-QKDQIEEKMKFLRKEADSL 816 (1222)
Q Consensus 740 SVEEIDarIa~LE~RIQTgSL--SLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESid-QKEaIqEQIKaLKKEIDEL 816 (1222)
.++.||.-++. ...+|..-+ =..-||+--+=|+.|+.-|+.-..+++.-+.+...++ +++.+++||..-+.+....
T Consensus 87 pl~iL~~mM~q-cKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~ 165 (561)
T KOG1103|consen 87 PLDILDKMMAQ-CKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKA 165 (561)
T ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554433 333443333 3356888888888888888765554443333322222 2344555554333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHH
Q 000924 817 RENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDRE 896 (1222)
Q Consensus 817 RkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdve 896 (1222)
....+++.-.+.+-.++...|.- -|.-.+.++..+.-+++....+++-...+-..-..+-.+-++....+
T Consensus 166 E~~k~Kl~~qLeeEk~RHeqis~----------mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERer 235 (561)
T KOG1103|consen 166 EIAKDKLEMQLEEEKKRHEQISL----------MLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERER 235 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhh
Confidence 22222222222222222222111 12234555555555555555444333222221112222223333334
Q ss_pred HHHHHHHHHHHHHHHHHhCChHH----------HHHHHHhhhhhHhh--hhcCCCCCCCCCCCC
Q 000924 897 ALQHLCVNQVERVLELWNNNDEF----------RKEYVNSNIRSTLR--RLKTLDGRSLGPDEE 948 (1222)
Q Consensus 897 ELeelC~aEVEkFMelWN~dkeF----------RkDYeKrnl~Sl~r--RqlT~DGR~rnPDEk 948 (1222)
.|| ..+|||+.++.+.-..+| |-..+|.-+-||-. |-+--|-.++-|+|+
T Consensus 236 glq--teaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNeq 297 (561)
T KOG1103|consen 236 GLQ--TEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPNEQ 297 (561)
T ss_pred ccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcccc
Confidence 444 346777777776555554 22233333334322 333445566666665
No 428
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=50.65 E-value=3.4e+02 Score=31.66 Aligned_cols=7 Identities=57% Similarity=0.781 Sum_probs=4.3
Q ss_pred CCCCCCC
Q 000924 940 GRSLGPD 946 (1222)
Q Consensus 940 GR~rnPD 946 (1222)
|-+++||
T Consensus 174 GlVlv~~ 180 (302)
T PF09738_consen 174 GLVLVPD 180 (302)
T ss_pred CeeeCCC
Confidence 5566666
No 429
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=50.62 E-value=4.8e+02 Score=30.67 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=15.1
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000924 661 DDENLREQIKAAQSKVDEKTRSRDAIR 687 (1222)
Q Consensus 661 DDEeLKAKIdeLqKEIeKLnq~RdaI~ 687 (1222)
+++.+...+..++..+..+......+.
T Consensus 90 ~~~~~~~~~~~~~~~l~~~~~q~~~l~ 116 (421)
T TIGR03794 90 FQPELRERLQESYQKLTQLQEQLEEVR 116 (421)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666665555544443
No 430
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=50.58 E-value=3.1e+02 Score=28.98 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHHhhc
Q 000924 740 SVDDIDGSIRNMEHRIAH 757 (1222)
Q Consensus 740 SVEEIDarIa~LE~RIQT 757 (1222)
-...++.+|..++++|.+
T Consensus 121 e~~~~~~ki~e~~~ki~~ 138 (177)
T PF07798_consen 121 EQAKQELKIQELNNKIDT 138 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455667777666644
No 431
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=50.43 E-value=4e+02 Score=30.90 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSL 865 (1222)
Q Consensus 798 QKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeL 865 (1222)
+++....+|...+.|+..+..+++..+++++++..++.++++. +-.+..++-+....+..+
T Consensus 194 eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~r-------l~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 194 EKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGR-------LGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3444455566777777777776666666666665444444444 444444554444444333
No 432
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=49.99 E-value=7.8e+02 Score=32.94 Aligned_cols=10 Identities=30% Similarity=0.342 Sum_probs=6.2
Q ss_pred CCchHHHHHH
Q 000924 1187 VPSWMWVLII 1196 (1222)
Q Consensus 1187 ~~yWmW~~~A 1196 (1222)
+++|.=++|+
T Consensus 831 NsrWTEGLIS 840 (980)
T KOG0980|consen 831 NSRWTEGLIS 840 (980)
T ss_pred cCchhHHHHH
Confidence 4567766654
No 433
>PHA01750 hypothetical protein
Probab=49.94 E-value=63 Score=30.58 Aligned_cols=8 Identities=38% Similarity=0.613 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 000924 811 KEADSLRE 818 (1222)
Q Consensus 811 KEIDELRk 818 (1222)
+|++.|+.
T Consensus 42 ~ELdNL~~ 49 (75)
T PHA01750 42 SELDNLKT 49 (75)
T ss_pred HHHHHHHH
Confidence 44444444
No 434
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.91 E-value=5.4e+02 Score=31.08 Aligned_cols=13 Identities=23% Similarity=-0.082 Sum_probs=5.6
Q ss_pred CCCcccccccccc
Q 000924 631 GSTVDASESRNIG 643 (1222)
Q Consensus 631 ~~~kDA~de~~~~ 643 (1222)
..+.+++.-++..
T Consensus 254 ~~~~~~~~~~~~~ 266 (503)
T KOG2273|consen 254 TSSTDAVSLLPSF 266 (503)
T ss_pred ccchhhhhccccc
Confidence 3344444444443
No 435
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=49.85 E-value=2.7e+02 Score=27.65 Aligned_cols=26 Identities=8% Similarity=0.202 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHhh
Q 000924 902 CVNQVERVLELWNNNDEFRKEYVNSN 927 (1222)
Q Consensus 902 C~aEVEkFMelWN~dkeFRkDYeKrn 927 (1222)
+..-..+|...++.=-.-..+|..+.
T Consensus 90 ~~~L~~~f~~~m~~fq~~Q~~~~~~~ 115 (151)
T cd00179 90 HSGLSKKFVEVMTEFNKAQRKYRERY 115 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445544444444444444444
No 436
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=49.58 E-value=85 Score=37.35 Aligned_cols=13 Identities=8% Similarity=0.422 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 000924 766 KQIIREIKQLKQR 778 (1222)
Q Consensus 766 KKLLKEIKQLKKs 778 (1222)
..+.++++.|+..
T Consensus 330 ~~l~~~~~~l~~~ 342 (451)
T PF03961_consen 330 PELKEKLEELEEE 342 (451)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444554444
No 437
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=49.34 E-value=47 Score=41.91 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=5.9
Q ss_pred cCCCChHHHHHHHHHHH
Q 000924 757 HETLPLKEEKQIIREIK 773 (1222)
Q Consensus 757 TgSLSLvEEKKLLKEIK 773 (1222)
.|+++...-.++-+.+.
T Consensus 147 ~G~I~~~~~~~f~~~l~ 163 (759)
T PF01496_consen 147 AGVIPREKIESFERILW 163 (759)
T ss_dssp -----HHHHHHHHHHHH
T ss_pred EEEEehhhHHHHHHHHH
Confidence 56676655544444443
No 438
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=49.32 E-value=1.4e+02 Score=31.41 Aligned_cols=11 Identities=45% Similarity=0.528 Sum_probs=4.9
Q ss_pred CCCCCCCCCCCC
Q 000924 937 TLDGRSLGPDEE 948 (1222)
Q Consensus 937 T~DGR~rnPDEk 948 (1222)
+-|| ..|-+|+
T Consensus 114 ~~dg-~~Gldeq 124 (155)
T PF06810_consen 114 DDDG-LKGLDEQ 124 (155)
T ss_pred CCCc-cccHHHH
Confidence 3344 4444444
No 439
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=49.22 E-value=2.4e+02 Score=26.74 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 000924 866 KKQAYDKNQHFW 877 (1222)
Q Consensus 866 RKERDEkNkeFY 877 (1222)
...+......|.
T Consensus 95 ~~~f~~~m~~fq 106 (117)
T smart00503 95 RKKFKEVMNEFQ 106 (117)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 440
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=49.16 E-value=6.5e+02 Score=31.76 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 800 DQIEEKMKFLRKEADS-LRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAA 851 (1222)
Q Consensus 800 EaIqEQIKaLKKEIDE-LRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL 851 (1222)
.++..+|..++.++.. .|+.++++-.=.+++.+.+.+++++|++|-.++..+
T Consensus 379 qtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~v 431 (531)
T PF15450_consen 379 QTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEV 431 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444455555444432 344444443333444444444444444443333333
No 441
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=49.14 E-value=3.9e+02 Score=29.20 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 828 QAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQH 875 (1222)
Q Consensus 828 KELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNke 875 (1222)
..+..++.++..+|-+|+.+...+..++.....++..|......++..
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~ 174 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEE 174 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445566666665566666666666666665555555443
No 442
>PRK12704 phosphodiesterase; Provisional
Probab=49.14 E-value=6.2e+02 Score=31.50 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=7.3
Q ss_pred HHHhhhhhHhhhhc
Q 000924 923 YVNSNIRSTLRRLK 936 (1222)
Q Consensus 923 YeKrnl~Sl~rRql 936 (1222)
+-++|+.+...|.-
T Consensus 189 ~a~~i~~~a~qr~a 202 (520)
T PRK12704 189 KAKEILAQAIQRCA 202 (520)
T ss_pred HHHHHHHHHHHhhc
Confidence 34555555555543
No 443
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=49.13 E-value=3.3e+02 Score=28.30 Aligned_cols=8 Identities=38% Similarity=0.696 Sum_probs=4.1
Q ss_pred HHHHHHHH
Q 000924 859 YKHWQSLK 866 (1222)
Q Consensus 859 YeeIkeLR 866 (1222)
|+.|.+||
T Consensus 119 fe~i~~~~ 126 (126)
T PF09403_consen 119 FEKIQSLR 126 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 55555544
No 444
>PF10140 YukC: WXG100 protein secretion system (Wss), protein YukC; InterPro: IPR018778 Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This protein is designated YukC in Bacillus subtilis and EssB is Staphylococcus aureus. ; PDB: 4ANN_A.
Probab=49.01 E-value=5.7 Score=46.42 Aligned_cols=28 Identities=21% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcccccc
Q 000924 1186 RVPSWMWVLIIALVVFALFLLGNSSFSF 1213 (1222)
Q Consensus 1186 ~~~yWmW~~~AAlvVlaLfvlGy~y~~~ 1213 (1222)
++..|.|++.++++|++++++||++|+-
T Consensus 192 k~~K~~~i~l~~l~v~l~~~~~Y~~f~~ 219 (359)
T PF10140_consen 192 KIFKYASIGLSILLVLLLIPLGYLYFFK 219 (359)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3566777777889999999999987753
No 445
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=48.78 E-value=1.2e+02 Score=40.07 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 000924 1074 AQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEK 1116 (1222)
Q Consensus 1074 ak~a~eRKkk~aeKaaa~A~~raqKEAEkKeKErEKKAKKK~~ 1116 (1222)
+++++||.+|+.-+++.+--.+.+|+.++=. +.+..+|+++
T Consensus 858 r~~eee~~~r~~l~~qr~e~~e~tk~~~~~~--~~~e~~k~s~ 898 (1018)
T KOG2002|consen 858 RKEEEEKARREKLEKQREEYRERTKEILKLP--EIEEEKKKSG 898 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chHhhhhhcC
Confidence 4555555555555555553444555555333 3445555543
No 446
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=48.76 E-value=2.6e+02 Score=26.96 Aligned_cols=10 Identities=10% Similarity=0.312 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 000924 860 KHWQSLKKQA 869 (1222)
Q Consensus 860 eeIkeLRKER 869 (1222)
++|..||.++
T Consensus 64 eEI~rLr~eL 73 (79)
T PF08581_consen 64 EEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455555544
No 447
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=48.75 E-value=1.3e+02 Score=37.92 Aligned_cols=55 Identities=11% Similarity=0.244 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 676 VDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (1222)
Q Consensus 676 IeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQe 730 (1222)
+.++...+..+..++..+..+|++|++.+.++..++.+++..+-.+..|+..|+.
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~ 135 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKG 135 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 5667777788889999999999999999998888888888777777666666543
No 448
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=48.71 E-value=3.1e+02 Score=27.94 Aligned_cols=12 Identities=33% Similarity=0.412 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 000924 767 QIIREIKQLKQR 778 (1222)
Q Consensus 767 KLLKEIKQLKKs 778 (1222)
++|.=|-.|=..
T Consensus 35 ~vin~i~~Ll~~ 46 (151)
T PF11559_consen 35 RVINCIYDLLQQ 46 (151)
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 449
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=48.65 E-value=2.6e+02 Score=27.09 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 000924 769 IREIKQLKQR 778 (1222)
Q Consensus 769 LKEIKQLKKs 778 (1222)
+.++++|+..
T Consensus 5 ~~~~q~l~~~ 14 (105)
T cd00632 5 LAQLQQLQQQ 14 (105)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 450
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=48.60 E-value=6.7e+02 Score=31.80 Aligned_cols=86 Identities=10% Similarity=0.252 Sum_probs=39.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccCCCHHHHHHHHHHHHHHhh-----c
Q 000924 685 AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM--MKNAISVDDIDGSIRNMEHRIA-----H 757 (1222)
Q Consensus 685 aI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnK--LRnAkSVEEIDarIa~LE~RIQ-----T 757 (1222)
.|...|..+-..-..+..-++.|..+.+..+..+..-+.-...||..+-. .....+..+|++++..++-.++ +
T Consensus 108 ~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~qf~~lt 187 (570)
T COG4477 108 DIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQFVELT 187 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444444455554444444444444444444443311 1112566677777666665543 3
Q ss_pred CCCChHHHHHHHH
Q 000924 758 ETLPLKEEKQIIR 770 (1222)
Q Consensus 758 gSLSLvEEKKLLK 770 (1222)
++--..+=..+|.
T Consensus 188 ~~Gd~ieA~evl~ 200 (570)
T COG4477 188 SSGDYIEAREVLE 200 (570)
T ss_pred cCCChhHHHHHHH
Confidence 4444444444443
No 451
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=48.59 E-value=2.2e+02 Score=28.99 Aligned_cols=51 Identities=35% Similarity=0.511 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 000924 1061 KLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKR 1117 (1222)
Q Consensus 1061 k~kE~kr~Ee~~Kak~a~eRKkk~aeKaaa~A~~raqKEAEkKeKErEKKAKKK~~~ 1117 (1222)
.+++++..+.+++...-.+|+++.+|+ .|..+-|++.-..+=++.|||.+|
T Consensus 52 ElKeEKe~er~~r~~~~kerr~~keEk------eR~E~~a~km~~kKv~RmkrkekR 102 (108)
T PF03879_consen 52 ELKEEKEAERQRRIQRIKERRKRKEEK------ERYEKMAAKMHAKKVERMKRKEKR 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444333344444444433 223333333333344445555444
No 452
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=48.38 E-value=5e+02 Score=30.20 Aligned_cols=12 Identities=33% Similarity=0.321 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 000924 699 EYAEKLEAAISD 710 (1222)
Q Consensus 699 ELiEQLKeLReE 710 (1222)
.|-+-|=.|.+.
T Consensus 126 ~yLe~Lc~IIqe 137 (269)
T PF05278_consen 126 YYLECLCDIIQE 137 (269)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 453
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=48.08 E-value=1.8e+02 Score=29.28 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 819 NVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKK 867 (1222)
Q Consensus 819 KLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRK 867 (1222)
.+..++..+..+..++.+++..|.+|.++..+|.-+-+.+++.+..+..
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444455555555555566666666666666665555555555443
No 454
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=48.06 E-value=2.9e+02 Score=30.69 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 829 AVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1222)
Q Consensus 829 ELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDE 871 (1222)
+|.++++.+++.+..++.++-.+.+--...|..+..+++...+
T Consensus 120 el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~e 162 (203)
T KOG3433|consen 120 ELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAE 162 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 4444555554545555555555555555566666666665444
No 455
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=47.81 E-value=3.9e+02 Score=28.82 Aligned_cols=133 Identities=13% Similarity=0.275 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHH-------------
Q 000924 740 SVDDIDGSIRNMEHRIAH-ETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEK------------- 805 (1222)
Q Consensus 740 SVEEIDarIa~LE~RIQT-gSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQ------------- 805 (1222)
.++-|++||..||+++-- ....-..-..+ |..|......+.+....+.+++..+...+.+..=
T Consensus 6 ~l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v---~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL~~YLDP~~~e~~~l~~ 82 (174)
T PF07426_consen 6 ALDILEKRIEELERRVYGENGSKEGQPEKV---IDSLLSVQSALNSAASKRERIKELFKRIEELNKYLDPNFIEEIQLPD 82 (174)
T ss_pred HHHHHHHHHHHHHHHHcCCCccccCCchHH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcCchhhhhcccch
Confidence 566778888888888821 11110011123 3455555444544445566665555444433211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 806 ---MKFLRKEADSLRENVIKAEAATQAVKKLHREES-EKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHF 876 (1222)
Q Consensus 806 ---IKaLKKEIDELRkKLkkLeaElKELsKK~DEIk-aEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeF 876 (1222)
...+-+.-+.++.....+ ++++.+..-++... ..+.++..+++.+....-+.++...+|-+...++...|
T Consensus 83 ~~K~~~ILa~e~~i~~~~~~L-eki~~L~pvL~se~i~~vp~~~~kL~~L~~~~~~Q~e~~~~ls~~~~~Ll~~Y 156 (174)
T PF07426_consen 83 SAKLQIILAEEDEIKSTAELL-EKIKSLEPVLDSESIRNVPELCDKLQKLSQIHLEQQEESEELSEEVQELLQQY 156 (174)
T ss_pred HHHHHHHHHccHHHHHHHHHH-HHHHHhhhhcCcHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222222222221 12222222222111 34556666666666666666666666666555544433
No 456
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.70 E-value=5.3e+02 Score=33.52 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=9.9
Q ss_pred cccccccCCCCCCCc
Q 000924 595 NRGIQLTGGEDGDRT 609 (1222)
Q Consensus 595 ~~~~~~~~~~~~~~~ 609 (1222)
.+.+-|||-.-|.-|
T Consensus 327 ~~~~iITGpN~gGKT 341 (782)
T PRK00409 327 KTVLVITGPNTGGKT 341 (782)
T ss_pred ceEEEEECCCCCCcH
Confidence 466778887766544
No 457
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=47.45 E-value=2.5e+02 Score=26.40 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHHhhcCCC-C-hHHHHHHHHHHHH
Q 000924 739 ISVDDIDGSIRNMEHRIAHETL-P-LKEEKQIIREIKQ 774 (1222)
Q Consensus 739 kSVEEIDarIa~LE~RIQTgSL-S-LvEEKKLLKEIKQ 774 (1222)
.....+...|..+++.+.+++- - |..-+.++..+..
T Consensus 86 ~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~ 123 (127)
T smart00502 86 QKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQN 123 (127)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 3666777778888888887553 2 3333444443333
No 458
>PRK11519 tyrosine kinase; Provisional
Probab=47.35 E-value=4.9e+02 Score=33.12 Aligned_cols=12 Identities=25% Similarity=0.177 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCC
Q 000924 937 TLDGRSLGPDEE 948 (1222)
Q Consensus 937 T~DGR~rnPDEk 948 (1222)
..+-|+..|-.-
T Consensus 404 ~~~~rIid~A~~ 415 (719)
T PRK11519 404 VGDVRIVDPAIT 415 (719)
T ss_pred CCCeEEEecCCC
Confidence 345666665543
No 459
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=46.86 E-value=2.8e+02 Score=33.45 Aligned_cols=46 Identities=4% Similarity=0.027 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQF 848 (1222)
Q Consensus 800 EaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeEl 848 (1222)
+.+-..|+.+...++.++..++. ++....++++.+-.+|..|+.++
T Consensus 137 ~~la~~~n~~~~~l~~~~~~~~~---~i~~~V~~iN~ll~~Ia~LN~~I 182 (456)
T PRK07191 137 NAMALRFNNVNNFIVQQKKSIGQ---QRDATVKQINSLTRSIADYNQKI 182 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666655554433 34444444444444444444444
No 460
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=46.79 E-value=9.2e+02 Score=32.82 Aligned_cols=57 Identities=14% Similarity=0.302 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 662 DENLREQIKAAQSKVDEKTRSRD-------AIRDDIQTIRASYKEYAEKLEAAISDERSARESL 718 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq~Rd-------aI~eELkalRaERdELiEQLKeLReE~KqlReer 718 (1222)
.++++.+|+.++++|..+...-. .+..++..++.+......++..+..++.+.+..+
T Consensus 450 ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l 513 (1041)
T KOG0243|consen 450 IEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL 513 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888998887765433 5666666666666666666666666665555554
No 461
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=46.79 E-value=5.2e+02 Score=30.01 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=15.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHh---cCCHHHHHHHH
Q 000924 871 DKNQHFWKYKDDTKQANDLAS---KGDREALQHLC 902 (1222)
Q Consensus 871 EkNkeFYqnRr~i~KARELAa---kgdveELeelC 902 (1222)
+....+-.....+.+|.+-.. ++++.+|+.|.
T Consensus 79 ~a~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~ 113 (344)
T PF12777_consen 79 EAEEELAEAEPALEEAQEALKSLDKSDISEIKSYA 113 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence 334444444445545544333 35555665554
No 462
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=46.57 E-value=1.3e+02 Score=29.53 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhcC---CCChHHH-HHHHHHHHHHHHHH
Q 000924 745 DGSIRNMEHRIAHE---TLPLKEE-KQIIREIKQLKQRR 779 (1222)
Q Consensus 745 DarIa~LE~RIQTg---SLSLvEE-KKLLKEIKQLKKsR 779 (1222)
+.+|.+||..+..+ ...+.+| +.+..||+-|+.+-
T Consensus 2 EdkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qv 40 (86)
T PF12711_consen 2 EDKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQV 40 (86)
T ss_pred chHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 46788999887433 3445566 88899999998874
No 463
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=46.17 E-value=4e+02 Score=33.71 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhCC----------hHHHHHHHHhhhh-hHhhhhcCCCCCCC
Q 000924 899 QHLCVNQVERVLELWNNN----------DEFRKEYVNSNIR-STLRRLKTLDGRSL 943 (1222)
Q Consensus 899 eelC~aEVEkFMelWN~d----------keFRkDYeKrnl~-Sl~rRqlT~DGR~r 943 (1222)
-++++...|-.|.+..|+ ..+=.+||.+|.- --..+..-.|+--+
T Consensus 153 h~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqdpdF~e~e~iYd~l~l 208 (575)
T KOG2150|consen 153 HRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVESNQDPDFLEDETIYDDLNL 208 (575)
T ss_pred HHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccCchhhhhhHHhhccCc
Confidence 345556666666655443 5667788888776 45555555565433
No 464
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=46.14 E-value=3e+02 Score=33.82 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=14.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHH
Q 000924 892 KGDREALQHLCVNQVERVLELW 913 (1222)
Q Consensus 892 kgdveELeelC~aEVEkFMelW 913 (1222)
.|.+..|-.+....+..+|...
T Consensus 277 gG~l~gll~~rd~~l~~~~~~L 298 (547)
T PRK08147 277 TGSLGGLLTFRSQDLDQTRNQL 298 (547)
T ss_pred CcchhhhHHHhhhhHHHHHHHH
Confidence 4777777777666665555554
No 465
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=45.99 E-value=1.5e+02 Score=34.98 Aligned_cols=70 Identities=13% Similarity=0.307 Sum_probs=45.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 000924 684 DAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHR 754 (1222)
Q Consensus 684 daI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~R 754 (1222)
..|..+-+.+......+..++.++..-++..-..+..+++.++.|...|.+++.. ...+-.+.|+.|+..
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~-~~~e~~~~i~~L~~~ 76 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS-LSAEERELIEKLEED 76 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CChhHHHHHHHHHHH
Confidence 3455555566666677777777777777888888888888888888877666421 122333345555444
No 466
>PHA01750 hypothetical protein
Probab=45.98 E-value=1e+02 Score=29.27 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 803 EEKMKFLRKEADSLRENVIKAEAATQAVKKLH 834 (1222)
Q Consensus 803 qEQIKaLKKEIDELRkKLkkLeaElKELsKK~ 834 (1222)
+.++..|+.|+.+++.+++.+..+++++++++
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 44455566666666555555444444444433
No 467
>PLN02316 synthase/transferase
Probab=45.68 E-value=45 Score=44.14 Aligned_cols=29 Identities=41% Similarity=0.461 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 1075 QEALERKKRIAEKAQTRAALRAQKEAEQKE 1104 (1222)
Q Consensus 1075 k~a~eRKkk~aeKaaa~A~~raqKEAEkKe 1104 (1222)
+++++..++++||||.+ |-|||..||-++
T Consensus 270 ~~~ee~~r~~~~kaa~~-a~~a~akae~~~ 298 (1036)
T PLN02316 270 RQAEEQRRREEEKAAME-ADRAQAKAEVEK 298 (1036)
T ss_pred HHHHHHHHHHHHhhhhh-hhhhhhhHHHHH
Confidence 44444455555665555 667776666443
No 468
>PRK05529 cell division protein FtsQ; Provisional
Probab=45.59 E-value=18 Score=40.13 Aligned_cols=19 Identities=16% Similarity=0.224 Sum_probs=10.1
Q ss_pred CchHHHHHHHHHHHHHHHh
Q 000924 1188 PSWMWVLIIALVVFALFLL 1206 (1222)
Q Consensus 1188 ~yWmW~~~AAlvVlaLfvl 1206 (1222)
+.|+|++++++++++++++
T Consensus 35 ~~~~~~~~~~~~~l~~l~~ 53 (255)
T PRK05529 35 FILLACAVGAVLTLLLFVM 53 (255)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4565555555555544444
No 469
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=45.54 E-value=3.9e+02 Score=32.14 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQF 848 (1222)
Q Consensus 801 aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeEl 848 (1222)
.+-++|..+...++.++..++. +++....+++.+-.+|..|+.++
T Consensus 143 ~l~~~~n~~~~~L~~~~~~~~~---~i~~~V~~iN~ll~~Ia~LN~~I 187 (431)
T PRK06799 143 KFTSQLNRLAKGLDELEAQTTE---DIEAHVNEFNRLAKSLAEANKKI 187 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666554333 34444444444445555554444
No 470
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=45.47 E-value=5.8e+02 Score=30.12 Aligned_cols=46 Identities=9% Similarity=0.264 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000924 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEA 706 (1222)
Q Consensus 661 DDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKe 706 (1222)
++..|..+|.+++..+...+.....|..+++++..++..+..+++.
T Consensus 132 n~~~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~ 177 (308)
T PF06717_consen 132 NDQDFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDR 177 (308)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888888888888777777777777777777766665544
No 471
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=45.40 E-value=2.5e+02 Score=25.87 Aligned_cols=108 Identities=10% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 791 EVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAE-----AATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSL 865 (1222)
Q Consensus 791 KIQESidQKEaIqEQIKaLKKEIDELRkKLkkLe-----aElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeL 865 (1222)
.+.....+...+..+|..|...+..+...+.... ..+..+..-+..+...|..+...+..+......+-..|..-
T Consensus 6 ~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 6 ELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHH
Q 000924 866 KKQAYDKNQHFWKYKDDTKQANDLASKGDREAL 898 (1222)
Q Consensus 866 RKERDEkNkeFYqnRr~i~KARELAakgdveEL 898 (1222)
+.++..+..=.=..+....+.....-+....++
T Consensus 86 ~~~~k~~e~L~e~~~~~~~~~~~r~Eq~~lDE~ 118 (123)
T PF02050_consen 86 RRERKKLEKLKERRREEYQQEEERREQKELDEI 118 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=45.28 E-value=1.7e+02 Score=30.82 Aligned_cols=6 Identities=0% Similarity=-0.474 Sum_probs=3.2
Q ss_pred hhhhcC
Q 000924 1031 EAKEEV 1036 (1222)
Q Consensus 1031 ~~~~e~ 1036 (1222)
+-+|-.
T Consensus 38 FHvYR~ 43 (142)
T PF06658_consen 38 FHVYRA 43 (142)
T ss_pred HHHHHH
Confidence 555544
No 473
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.09 E-value=73 Score=38.56 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhH--HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000924 664 NLREQIKAAQSKVDEKTRSRDAIRDDI--QTIRASY--KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLnq~RdaI~eEL--kalRaER--dELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL 735 (1222)
++..+.-.+..+++.++..|+.+..++ ...+.+. ..|+++++.|..+++.+.....+...+++.+...|..+
T Consensus 33 ~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi 108 (429)
T COG0172 33 ELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNI 108 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCC
No 474
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=44.94 E-value=22 Score=39.01 Aligned_cols=40 Identities=8% Similarity=0.450 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCCCh
Q 000924 721 KRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPL 762 (1222)
Q Consensus 721 KIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSLSL 762 (1222)
.+.++=.+...|...+ ..++.+..+++.|+.++...+++|
T Consensus 160 ~~~d~l~ie~~L~~v~--~eIe~~~~~~~~l~~~v~~sti~i 199 (262)
T PF14257_consen 160 TVEDLLEIERELSRVR--SEIEQLEGQLKYLDDRVDYSTITI 199 (262)
T ss_pred CHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhceEEEEE
Confidence 4555666666776665 477778888999999999888654
No 475
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=44.91 E-value=3.3e+02 Score=28.18 Aligned_cols=88 Identities=11% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 770 REIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFL---------------RKEADSLRENVIKAEAATQAVKKLH 834 (1222)
Q Consensus 770 KEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaL---------------KKEIDELRkKLkkLeaElKELsKK~ 834 (1222)
..+.++.....++..++..+.++...+.+.+...+.+..| +...+.+..++++ ...-|..++
T Consensus 10 ~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~e---r~E~Le~ri 86 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEE---RKETLELRI 86 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHH---HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 835 REESEKLKRLLGQFKAADEIRQEAYK 860 (1222)
Q Consensus 835 DEIkaEI~ELQeElkAL~EKRDEAYe 860 (1222)
..+..+...++++++.+...+..+|.
T Consensus 87 ~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 87 KTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
No 476
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=44.63 E-value=1.6e+02 Score=31.03 Aligned_cols=79 Identities=22% Similarity=0.354 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhh--hccc-hhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000924 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISS--SIGE-HDEVQLAFDQKDQIEEKMKFLRKEADS 815 (1222)
Q Consensus 739 kSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViA--nAa~-rAKIQESidQKEaIqEQIKaLKKEIDE 815 (1222)
.||-||++++.-+-. .||-+|++.|..+.. |++. +.+ -+.|+..+..+-..|..+++.
T Consensus 32 mSVReLNr~LrG~~r----------------eEVvrlKQrRRTLKNRGYA~sCR~K---Rv~Qk~eLE~~k~~L~qqv~~ 92 (135)
T KOG4196|consen 32 MSVRELNRHLRGLSR----------------EEVVRLKQRRRTLKNRGYAQSCRVK---RVQQKHELEKEKAELQQQVEK 92 (135)
T ss_pred hhHHHHHHHhcCCCH----------------HHHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 367777765544332 367788888877743 3322 111 112333443333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000924 816 LRENVIKAEAATQAVKKLHRE 836 (1222)
Q Consensus 816 LRkKLkkLeaElKELsKK~DE 836 (1222)
|+.+...+.-+++++..+|+.
T Consensus 93 L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 93 LKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 477
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=44.35 E-value=6.9e+02 Score=30.71 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHH
Q 000924 662 DENLREQIKAAQSKVDEKTRSRDAI 686 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq~RdaI 686 (1222)
...++-.+..++.++..++..-..+
T Consensus 111 ~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 111 LAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666655555544444
No 478
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=44.14 E-value=6.6e+02 Score=30.44 Aligned_cols=73 Identities=14% Similarity=0.199 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHH
Q 000924 843 RLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND-LASKGDREALQHLCVNQVERVLELWNNNDEFRK 921 (1222)
Q Consensus 843 ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARE-LAakgdveELeelC~aEVEkFMelWN~dkeFRk 921 (1222)
-|..++.........+-++...|++-.+.........|++.+-..- -.++|- .+|-=-.|+.+|.-..|-.
T Consensus 256 ~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNeqLk~pvtvskgt--------ateplmlmsvfcqtesfpa 327 (561)
T KOG1103|consen 256 FLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPNEQLKGPVTVSKGT--------ATEPLMLMSVFCQTESFPA 327 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCccccccCceeecccc--------ccchhHHhhhhhhcccCch
Confidence 3333333333333334445555566555555555555554431110 011111 1233346888888888876
Q ss_pred HH
Q 000924 922 EY 923 (1222)
Q Consensus 922 DY 923 (1222)
+.
T Consensus 328 er 329 (561)
T KOG1103|consen 328 ER 329 (561)
T ss_pred hh
Confidence 53
No 479
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=43.93 E-value=4.2e+02 Score=28.11 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=15.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 793 QLAFDQKDQIEEKMKFLRKEADSLRENVIKAE 824 (1222)
Q Consensus 793 QESidQKEaIqEQIKaLKKEIDELRkKLkkLe 824 (1222)
+..+.++..+.-.+..+...++..+.++.++.
T Consensus 124 k~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~ 155 (236)
T PF09325_consen 124 KEALNRRDKKLIEYQNAEKELQKKKAQLEKLK 155 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44444444444444445555555555544443
No 480
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=43.60 E-value=23 Score=34.24 Aligned_cols=40 Identities=18% Similarity=0.081 Sum_probs=22.3
Q ss_pred CCCCChhhhhcccCCCCchH-HHHHHHHHHHHHHHhhcccc
Q 000924 1172 AKSIPLPLRNRGKRRVPSWM-WVLIIALVVFALFLLGNSSF 1211 (1222)
Q Consensus 1172 ~~slPkaI~nRkKr~~~yWm-W~~~AAlvVlaLfvlGy~y~ 1211 (1222)
.+.+++.++++++.+.=.+- -++.+|+++.+++-+|||++
T Consensus 36 lkk~~~~~~kKknkK~i~iS~ias~la~lv~t~~G~g~y~~ 76 (85)
T TIGR01495 36 LKKLTKAEKKKKNKKIILYSSIASGLALLVGAGVGLGYYYK 76 (85)
T ss_pred hhccCHHHHHhhcCceeehHHHHHHHHHHHHHHHHHhhhhh
Confidence 34577888776433221221 12223566677788888775
No 481
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=43.54 E-value=5.9e+02 Score=29.71 Aligned_cols=126 Identities=19% Similarity=0.341 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--
Q 000924 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAI-- 739 (1222)
Q Consensus 662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAk-- 739 (1222)
...++.+...|+...+.++-.-..+..++.-.+.+--.-+++|..=-.+.++..+.+.+-|.++++....|..-+.++
T Consensus 54 L~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~ 133 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIY 133 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhh
Q ss_pred CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000924 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLREN 819 (1222)
Q Consensus 740 SVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkK 819 (1222)
|.+++. +.|....+.. |-+.+.+++++.+-+.+.-|+.|...||.+
T Consensus 134 sleDfe---------------------------qrLnqAIErn-------AfLESELdEke~llesvqRLkdEardlrqe 179 (333)
T KOG1853|consen 134 SLEDFE---------------------------QRLNQAIERN-------AFLESELDEKEVLLESVQRLKDEARDLRQE 179 (333)
T ss_pred hHHHHH---------------------------HHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 000924 820 VI 821 (1222)
Q Consensus 820 Lk 821 (1222)
+.
T Consensus 180 la 181 (333)
T KOG1853|consen 180 LA 181 (333)
T ss_pred HH
No 482
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=43.42 E-value=2.6e+02 Score=33.10 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 000924 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEA--------YKHWQSLKKQAYDK 872 (1222)
Q Consensus 801 aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEA--------YeeIkeLRKERDEk 872 (1222)
++.+++..|.++..+|.+....+.++++++.+-.+.+...|..-..+++.+.....++ -+.+++|++...+.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 000924 873 NQHFWK 878 (1222)
Q Consensus 873 NkeFYq 878 (1222)
...|++
T Consensus 81 ~~~l~D 86 (330)
T PF07851_consen 81 RCQLFD 86 (330)
T ss_pred HhhHHH
No 483
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=43.31 E-value=2.6e+02 Score=28.24 Aligned_cols=76 Identities=16% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhccchhHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 767 QIIREIKQLKQRREQISSSIGEHDEVQLAFDQ-KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKR 843 (1222)
Q Consensus 767 KLLKEIKQLKKsRKkViAnAa~rAKIQESidQ-KEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~E 843 (1222)
.++.++..++-.-........+...-.+...+ ...|...|...++++..++.+|...+ .+..-..+|+.+...|.+
T Consensus 50 ~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak-~~r~~k~eyd~La~~I~~ 126 (139)
T PF05615_consen 50 RLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAK-RVRQNKEEYDALAKKINS 126 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc
No 484
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=43.17 E-value=3.2e+02 Score=26.54 Aligned_cols=81 Identities=17% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000924 809 LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND 888 (1222)
Q Consensus 809 LKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARE 888 (1222)
|-.||..+....+++...+......+-.+...+..|..+...++.+.-.+....+.|..+...++...-.++..+.+..+
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred H
Q 000924 889 L 889 (1222)
Q Consensus 889 L 889 (1222)
+
T Consensus 81 ~ 81 (96)
T PF08647_consen 81 T 81 (96)
T ss_pred H
No 485
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.16 E-value=2.4e+02 Score=34.86 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000924 803 EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK-AADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD 881 (1222)
Q Consensus 803 qEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElk-AL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr 881 (1222)
++-|+.|-.++.++|+++..+..+-+.+.++.+.++..-..+..+++ ++...|.++-.++..|..++.......-+..+
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 000924 882 DT 883 (1222)
Q Consensus 882 ~i 883 (1222)
-+
T Consensus 138 ~l 139 (472)
T TIGR03752 138 RL 139 (472)
T ss_pred HH
No 486
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=43.14 E-value=76 Score=37.75 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--hhhhccccccccCCccccc
Q 000924 1068 LEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKK--EKRKAAAAEDTAITNEEEY 1133 (1222)
Q Consensus 1068 ~Ee~~Kak~a~eRKkk~aeKaaa~A~~raqKEAEkKeKErEKKAKKK--~~~~~~sae~~~~~~E~es 1133 (1222)
.||+.+.+..++.|+++.|+..++-+.+.++- .|++++++++-++ .++.+..+++..+.++.+.
T Consensus 318 ~eEi~~l~~~~ekk~~lKeqRkkeQ~env~Rk--~~~~k~~~~~e~~a~eG~~~s~~~~~~~de~~~~ 383 (405)
T KOG2963|consen 318 EEEIKALRKRHEKKRRLKEQRKKEQEENVARK--VKEAKKERKLEKRAAEGGEGSEKDGDMGDEDSSE 383 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcccccCcCCCcccccchh
No 487
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=43.12 E-value=3.1e+02 Score=26.62 Aligned_cols=69 Identities=26% Similarity=0.409 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 665 LREQIKAAQSKVD---EKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (1222)
Q Consensus 665 LKAKIdeLqKEIe---KLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLn 733 (1222)
|..+|+.|++-+. .....++.+..+++.+...|..|-.+|.....+...+...-.+-...|+..-..|.
T Consensus 13 L~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 13 LEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=43.09 E-value=7.2e+02 Score=30.56 Aligned_cols=178 Identities=15% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH-HHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 000924 663 ENLREQIKAAQSKVDEKTRSRDA-IRDDIQTIRAS-YKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAIS 740 (1222)
Q Consensus 663 EeLKAKIdeLqKEIeKLnq~Rda-I~eELkalRaE-RdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkS 740 (1222)
..+..+|..|.++|.+++..-.. +...|+..+.+ .+.+..++..-..+... ........+++..+..|.+ ..
T Consensus 254 ~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~--~~~~~~~~e~~~~~~~l~~----~~ 327 (582)
T PF09731_consen 254 AHAKERIDALQKELAELKEEEEEELERALEEQREELLSKLREELEQELEEKRA--ELEEELREEFEREREELEE----KY 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH----HH
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 741 VDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENV 820 (1222)
Q Consensus 741 VEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKL 820 (1222)
.++|+.+++.-+..+...----..+..+-.+..-.+..+..| ..++..-..+|..|...+..|..-+
T Consensus 328 ~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v-------------~~Er~~~~~~l~~~~~~~~~le~~~ 394 (582)
T PF09731_consen 328 EEELRQELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKV-------------EQERNGRLAKLAELNSRLKALEEAL 394 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Q 000924 821 IKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEA--------YKHWQSLKK 867 (1222)
Q Consensus 821 kkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEA--------YeeIkeLRK 867 (1222)
........... .+..|.--..+|....... ..++..|+.
T Consensus 395 ~~~~~~~~~~~--------~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~ 441 (582)
T PF09731_consen 395 DARSEAEDENR--------RAQQLWLAVDALKSALDSGNAGSPRPFEDELRALKE 441 (582)
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHH
No 489
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=42.79 E-value=5e+02 Score=28.66 Aligned_cols=245 Identities=15% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH
Q 000924 663 ENLREQIKAAQS--KVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESL-------------KSKRQEIDS 727 (1222)
Q Consensus 663 EeLKAKIdeLqK--EIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer-------------~EKIKEIk~ 727 (1222)
+.|..++..+.. -+..+...-..|..-....+....+....|..-..+-..+|... ..-+.++..
T Consensus 9 ~~l~~~~~~v~~~~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~ 88 (296)
T PF13949_consen 9 PSLLEKSEEVRSEGGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQK 88 (296)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHH
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH---------HHHHHHHHhhhhccchhHHHHHHhH
Q 000924 728 VQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIK---------QLKQRREQISSSIGEHDEVQLAFDQ 798 (1222)
Q Consensus 728 LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIK---------QLKKsRKkViAnAa~rAKIQESidQ 798 (1222)
++..|.... .|-..|..++.....-|..=+.+..+=...|-..+ .+...+..+ .++.....+
T Consensus 89 ~~~~L~~A~--~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll-------~~l~~l~~e 159 (296)
T PF13949_consen 89 YREYLEQAS--ESDSQLRSKLESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELL-------NKLEELKKE 159 (296)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHH-------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000924 799 KDQIEEKMKFLRKEADSLRENVI--------KAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ-- 868 (1222)
Q Consensus 799 KEaIqEQIKaLKKEIDELRkKLk--------kLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKE-- 868 (1222)
+..+..+++. +-+-|.+-+-+. .....+.+--++|+.....|.........+-.....+|+.+...|+.
T Consensus 160 R~~~~~~lk~-~~~~d~i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~ 238 (296)
T PF13949_consen 160 REELLEQLKE-KLQNDDISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSDQ 238 (296)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SH
T ss_pred HHHHHHHHHH-HHhhccHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Q ss_pred -HHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHH
Q 000924 869 -AYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEF 919 (1222)
Q Consensus 869 -RDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMelWN~dkeF 919 (1222)
....+..+-..........++ ..++.+--.||+.=.+..-.+.+.=..|
T Consensus 239 ~~~~r~~~~~~l~~a~~~y~el--~~~l~eG~~FY~~L~~~~~~l~~~~~~f 288 (296)
T PF13949_consen 239 EQKERESALQRLEAAYDAYKEL--SSNLEEGLKFYNDLLEILNKLQQKVEDF 288 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=42.58 E-value=4.5e+02 Score=33.65 Aligned_cols=95 Identities=12% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 793 QLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDK 872 (1222)
Q Consensus 793 QESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEk 872 (1222)
...+..+..+..+|..|+.+|..+++.|...+.++..-.-.++...+++..++.+.-=|..-.+..-.....|++-...+
T Consensus 75 e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl 154 (632)
T PF14817_consen 75 ENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRL 154 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHH
Q 000924 873 NQHFWKYKDDTKQAN 887 (1222)
Q Consensus 873 NkeFYqnRr~i~KAR 887 (1222)
+.+.-+.++..++++
T Consensus 155 ~~~~~~~q~~~R~a~ 169 (632)
T PF14817_consen 155 QGQVEQLQDIQRKAK 169 (632)
T ss_pred HHHHHHHHHHHhhcc
No 491
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.14 E-value=1.7e+02 Score=35.68 Aligned_cols=102 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 772 IKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAA 851 (1222)
Q Consensus 772 IKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL 851 (1222)
|+-++...+.+......+......++..-++..+.+.+..+.++|+.+.+.+..++....++-.+ ....|..+.+.+
T Consensus 4 ~k~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~---~~~~l~~e~~~l 80 (429)
T COG0172 4 LKLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED---DAEELIAEVKEL 80 (429)
T ss_pred HHHhhhCHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 852 DEIRQEAYKHWQSLKKQAYDKNQHF 876 (1222)
Q Consensus 852 ~EKRDEAYeeIkeLRKERDEkNkeF 876 (1222)
.++...+-.++.++..+.+...-.+
T Consensus 81 ~~~l~~~e~~~~~~~~~l~~~ll~i 105 (429)
T COG0172 81 KEKLKELEAALDELEAELDTLLLTI 105 (429)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhC
No 492
>PTZ00464 SNF-7-like protein; Provisional
Probab=42.08 E-value=5.3e+02 Score=28.69 Aligned_cols=94 Identities=7% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH---------
Q 000924 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRA---------------SYKEYAEKLEAAISDERSARESL--------- 718 (1222)
Q Consensus 663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalRa---------------ERdELiEQLKeLReE~KqlReer--------- 718 (1222)
..+..++..+++.|+++...+...+..++..+. ++.-|..++..+..++-.+...+
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~ 100 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDT 100 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhh
Q 000924 719 KSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIA 756 (1222)
Q Consensus 719 ~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQ 756 (1222)
..-+..|+.-..+|.++....+++.||.-...++..+.
T Consensus 101 ~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e 138 (211)
T PTZ00464 101 KVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYE 138 (211)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
No 493
>smart00030 CLb CLUSTERIN Beta chain.
Probab=41.93 E-value=2.4e+02 Score=31.49 Aligned_cols=90 Identities=19% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCC
Q 000924 837 ESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNN 916 (1222)
Q Consensus 837 IkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMelWN~d 916 (1222)
+..+|...-.-.+.....+++.-++.+.|-..+.+..+ +-..++..+++. +.+.++-+.+|+ |.+|++|
T Consensus 20 vd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk---~KeeAlk~~~e~--e~kL~E~~~vCn---etm~alW--- 88 (206)
T smart00030 20 INKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKK---KKEEALKDTRES--EEKLKESQGVCN---ETMMALW--- 88 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHH--HHHHHHHHHHHH---HHHHHHH---
Q ss_pred hHHHHHHHHhhhhhHhhhhcCCCCCC
Q 000924 917 DEFRKEYVNSNIRSTLRRLKTLDGRS 942 (1222)
Q Consensus 917 keFRkDYeKrnl~Sl~rRqlT~DGR~ 942 (1222)
+==|--|.+||+|..||-=|+
T Consensus 89 -----eECKpCLk~tCmkfYsr~Crs 109 (206)
T smart00030 89 -----EECKPCLKQTCMKFYARVCRS 109 (206)
T ss_pred -----HHhHHHHHHHHHHHHHHhcCC
No 494
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=41.77 E-value=1.3e+02 Score=34.71 Aligned_cols=68 Identities=9% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 806 MKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN 873 (1222)
Q Consensus 806 IKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkN 873 (1222)
|++|+.+++.++.++..+.+.......++.+...++.+|+++...+.+.++.+-.++..+.....+.+
T Consensus 1 l~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVTEETK 68 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
No 495
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=41.65 E-value=5.4e+02 Score=28.73 Aligned_cols=145 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccchh--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 766 KQIIREIKQLKQRREQISSSIGEHD--EVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKR 843 (1222)
Q Consensus 766 KKLLKEIKQLKKsRKkViAnAa~rA--KIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~E 843 (1222)
..+|.++.++=+.++.+..+....- ++...+..+..+. |....+...+..++.....++...++.|+....+...
T Consensus 68 ~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~r---K~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~ 144 (237)
T cd07657 68 KEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAK---KAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKA 144 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 000924 844 LLGQFKAADE-------IRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELW 913 (1222)
Q Consensus 844 LQeElkAL~E-------KRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMelW 913 (1222)
...++..+.. ..+++-.+..+-..+....+..|-..-...++..+.=+.-++-+|=..-+.=-|.++..|
T Consensus 145 Ar~k~e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~lP~ll~~lQ~l~E~ri~~~ 221 (237)
T cd07657 145 AKSKFEEAVVKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLLPGLLNSLQSLQEEFITQW 221 (237)
T ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 496
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=41.45 E-value=5.5e+02 Score=29.11 Aligned_cols=153 Identities=12% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHH--HHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000924 741 VDDIDGSIRNMEHRIAHETLPLKEEKQI--IREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRE 818 (1222)
Q Consensus 741 VEEIDarIa~LE~RIQTgSLSLvEEKKL--LKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRk 818 (1222)
+.++|++|..-..++....-........ ..+|..|......+..-++.-+. +-.+++-..+..++..|+.+...+..
T Consensus 92 i~d~drrI~~~k~RL~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGe-eG~VdeA~~~~~~~e~Lk~ek~~le~ 170 (254)
T PF03194_consen 92 IRDCDRRIERAKERLEQTQEEQAKEADEEKAEKIDELDEKIGELLKEAEELGE-EGDVDEAQKLMEEVEKLKEEKEELEK 170 (254)
T ss_pred HHHHHHHHHHHHHHHHhCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 000924 819 NVIKAEAATQAVK-------KLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLAS 891 (1222)
Q Consensus 819 KLkkLeaElKELs-------KK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAa 891 (1222)
.+.++........ .-++-+-+=|...-.+.+-.+=---+.|--+..+|..+.++...+-..|...+..+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D~d~RladH~~GK~HlGy~~IR~~l~el~e~~~~~~~~~R~~~~~~~ 250 (254)
T PF03194_consen 171 ELEEYRNSIENSAQSQQQKLEVCEVCGAFLSVGDNDRRLADHFGGKQHLGYAKIREKLKELKEKREERREKERRRRELRK 250 (254)
T ss_pred hhhhhhhhhhhhhcccccCccchhhhhhHHhccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhh
Q ss_pred cCC
Q 000924 892 KGD 894 (1222)
Q Consensus 892 kgd 894 (1222)
+.+
T Consensus 251 ~R~ 253 (254)
T PF03194_consen 251 QRE 253 (254)
T ss_pred ccc
No 497
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=41.40 E-value=1e+03 Score=31.91 Aligned_cols=266 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----
Q 000924 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNA----- 738 (1222)
Q Consensus 664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnA----- 738 (1222)
.++++|..++.++-.++ ..++..+++.++.+-..+.+.++++..+..+.+..+..+....--.....++++..
T Consensus 334 ~lK~ql~~l~~ell~~~--~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~ 411 (913)
T KOG0244|consen 334 KLKAQLEPLQVELLSKA--GDELDAEINSLPFENVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCM 411 (913)
T ss_pred HHHHHHHHHHHHHHhhc--cccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHH
Q ss_pred -------------------CCHHHHHHH-------------HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhc
Q 000924 739 -------------------ISVDDIDGS-------------IRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSI 786 (1222)
Q Consensus 739 -------------------kSVEEIDar-------------Ia~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnA 786 (1222)
.+...++.. .......-.+--.++.-++ +-.|...|.+........+
T Consensus 412 ~~~~~~~~~~~~~~~~~L~~~~~~v~~~~~e~~~~~~~~~~e~~~~~~~~~~~~~~~q~~-ls~el~el~k~l~~Ke~l~ 490 (913)
T KOG0244|consen 412 NLLSEDSNEDASDKSASLPKPLEPVDSGTEEIGMNTDTSGDEAAEKELSETIGHPQKQGS-LSGELSELEKRLAEKEPLT 490 (913)
T ss_pred HHHHHhHhHHhhhccccCCccccccccccccccccccCCCchhhhcccccCccchHHHhh-hhHHHHHHHhhhccccHHH
Q ss_pred cchh----HHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 787 GEHD----EVQLAFDQKD----QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEA 858 (1222)
Q Consensus 787 a~rA----KIQESidQKE----aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEA 858 (1222)
-..+ ..+....+.+ .+..++..+..|.+.|+.++..+.....++...+-..-..+..--..++.....+-++
T Consensus 491 rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l 570 (913)
T KOG0244|consen 491 RRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKL 570 (913)
T ss_pred HHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhhh
Q 000924 859 YKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRL 935 (1222)
Q Consensus 859 YeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMelWN~dkeFRkDYeKrnl~Sl~rRq 935 (1222)
++....-...+.......+ +-...+++.+...+.-.+.-..-..--+|-|.+. +...-+..|.-.++--+.+++
T Consensus 571 ~~~~~~~~~~~~kl~~ei~--~~k~~kv~l~~~~~~d~ekfr~~K~~~~Ke~~ql-k~~~rk~~~~~~~~~~l~~~q 644 (913)
T KOG0244|consen 571 IKPKPKSEGIRAKLLQEIH--IAKGQKVQLLRVMKEDAEKFRQWKDRTEKEWNQL-KGQERKSEGEHPKLEVLVKKQ 644 (913)
T ss_pred hccchhhHHHHHHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-hccchhhccchhHHHHHHHHH
No 498
>PLN03086 PRLI-interacting factor K; Provisional
Probab=40.74 E-value=1.3e+02 Score=37.68 Aligned_cols=62 Identities=26% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 1045 EMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKER 1107 (1222)
Q Consensus 1045 e~~rk~~~~~~e~~~ak~kE~kr~Ee~~Kak~a~eRKkk~aeKaaa~A~~raqKEAEkKeKEr 1107 (1222)
|+.+.++...+|..+.+.+.+.|++..+ ..+++.+|+|+|-.|+++...--+-+|..|.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (567)
T PLN03086 4 ELRRAREKLEREQRERKQRAKLKLERER-KAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQ 65 (567)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=40.56 E-value=5.8e+02 Score=28.74 Aligned_cols=122 Identities=11% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
Q 000924 778 RREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEK------------LKRLL 845 (1222)
Q Consensus 778 sRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaE------------I~ELQ 845 (1222)
.++....+....+.......+ .+..+++.+..+++.++.+++.++..++.....+.....= ....+
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~ 188 (301)
T PF14362_consen 111 DQKLDEIRQEKQDAIQAQVQA--SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKR 188 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHhcCCHHHHHHH
Q 000924 846 GQFKAADEIRQEAYKHWQSLKKQAY----DKNQHFWKYKDDTKQANDLASKGDREALQHL 901 (1222)
Q Consensus 846 eElkAL~EKRDEAYeeIkeLRKERD----EkNkeFYqnRr~i~KARELAakgdveELeel 901 (1222)
.+++.+..+.+.+-..++....+.+ ......-..+.......+....++..-|.++
T Consensus 189 ~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~ 248 (301)
T PF14362_consen 189 AQLDAAQAELDTLQAQIDAAIAALDAQIAARKARLDEARQAKVAEFQAIISANDGFLARL 248 (301)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHhhccCCCHHHHH
No 500
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=40.51 E-value=1.8e+02 Score=36.80 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924 801 QIEEKMKFL---RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (1222)
Q Consensus 801 aIqEQIKaL---KKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKE 868 (1222)
.+.++...+ ..|+-++..+..++..++.+++.++++++..|...|-++-+|...+..+-..+.+|+++
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Done!