Query 000924
Match_columns 1222
No_of_seqs 163 out of 229
Neff 3.0
Searched_HMMs 13730
Date Tue Mar 26 15:58:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000924.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_694-698//hhsearch_scop/000924hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gqea_ e.38.1.1 (A:) Polypept 76.3 1.6 0.00011 18.2 11.5 59 724-782 7-67 (362)
2 d1seta1 a.2.7.1 (A:1-110) Sery 61.0 3.2 0.00023 16.1 8.8 24 763-786 35-58 (110)
3 d1qvra2 c.37.1.20 (A:149-535) 27.0 11 0.00079 12.4 11.8 30 649-679 174-203 (387)
4 d2efla1 a.238.1.4 (A:1-288) Fo 5.4 64 0.0046 7.2 27.6 34 855-888 169-202 (288)
5 d2ayua1 d.305.1.1 (A:70-370) N 4.9 72 0.0052 6.8 8.0 32 853-884 39-70 (301)
6 d1fxkc_ a.2.5.1 (C:) Prefoldin 4.9 72 0.0052 6.8 11.4 25 803-827 94-118 (133)
7 d1nzea_ a.24.18.1 (A:) Oxygen- 3.7 1E+02 0.0074 5.8 7.8 21 682-702 37-57 (112)
8 d2axtj1 f.23.32.1 (J:7-40) Pho 3.7 1E+02 0.0075 5.7 3.2 25 1186-1210 1-28 (34)
9 d1ybza1 a.130.1.1 (A:2-75) mon 3.7 1E+02 0.0075 5.7 6.9 68 662-729 3-73 (74)
10 d2ap3a1 a.24.27.1 (A:12-196) H 3.6 1.1E+02 0.0078 5.6 18.6 175 694-875 4-180 (185)
No 1
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=76.25 E-value=1.6 Score=18.18 Aligned_cols=59 Identities=8% Similarity=0.244 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999997300599978799999977788620888--9399999999999999999985
Q 000924 724 EIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRREQI 782 (1222)
Q Consensus 724 ELesLQeaLnKLRnAKSVEEIDakIk~LE~RIQTeSL--SLeEEKKLIKEIKQLKKsRekV 782 (1222)
.+..|+..+..++..-.++.+..+|..|+.++....+ -...=+++++|++.|+.....+
T Consensus 7 ~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~ 67 (362)
T d1gqea_ 7 RIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTL 67 (362)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999776979899999999998639714449999999999999999999999
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=61.02 E-value=3.2 Score=16.06 Aligned_cols=24 Identities=13% Similarity=0.509 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999853100
Q 000924 763 KEEKQIIREIKQLKQRREQISSSI 786 (1222)
Q Consensus 763 eEEKKLIKEIKQLKKsRekViAnA 786 (1222)
.+-+.++.++.+|+..|..+..-+
T Consensus 35 ~~rr~l~~~~e~l~~~rN~~sk~i 58 (110)
T d1seta1 35 REVQELKKRLQEVQTERNQVAKRV 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999998
No 3
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=26.97 E-value=11 Score=12.43 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=20.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7741552489999179999999999699999
Q 000924 649 QPFYFLVKVPRYDDENLREQIKAAQSKVDEK 679 (1222)
Q Consensus 649 ~sFyYiVKvPRpDDEeLKAKIdeLeKEIeEL 679 (1222)
+-| ..|.+..|+.+.-..-+..+....+.+
T Consensus 174 rrF-~~v~v~ep~~~~~~~il~~~~~~~e~~ 203 (387)
T d1qvra2 174 RRF-QPVYVDEPTVEETISILRGLKEKYEVH 203 (387)
T ss_dssp SCC-CCEEECCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHC-CCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 824-611279986788999999999998740
No 4
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.41 E-value=64 Score=7.16 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998999999999898999993878999989
Q 000924 855 RQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND 888 (1222)
Q Consensus 855 RDEAYEeLkELRKErDEkNkeFyqnRR~i~KARE 888 (1222)
.++..........+.......|.......++++.
T Consensus 169 ~~K~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~ 202 (288)
T d2efla1 169 VEKARQQAQIRHQMAEDSKADYSSILQKFNHEQH 202 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8877889999999998889999999999999999
No 5
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.91 E-value=72 Score=6.80 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999899999999989899999387899
Q 000924 853 EIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTK 884 (1222)
Q Consensus 853 EkRDEAYEeLkELRKErDEkNkeFyqnRR~i~ 884 (1222)
....+.+.++.+|.+++..+..-+|+.|+.+-
T Consensus 39 ~le~~f~~e~~~LE~ky~~~~~ply~kR~~II 70 (301)
T d2ayua1 39 EVEKEFQVEMFELENKFLQKYKPIWEQRSRII 70 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 99999999999999999998685999999997
No 6
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=4.91 E-value=72 Score=6.80 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999
Q 000924 803 EEKMKFLRKEADSLRENVIKAEAAT 827 (1222)
Q Consensus 803 qEQIKaLKKEIDELRkKLkkLkaEl 827 (1222)
..+++.+.+.++.+.+++..+.+.+
T Consensus 94 ~~ri~~l~~~~~~l~~~~~~~~~~i 118 (133)
T d1fxkc_ 94 KSQKNELESTLQKMGENLRAITDIM 118 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999
No 7
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=3.72 E-value=1e+02 Score=5.77 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799999967999999999999
Q 000924 682 SRDAIRDDIQTIRASYKEYAE 702 (1222)
Q Consensus 682 kRdeI~aELkalRaERdELiE 702 (1222)
.|+.|+..+..+|.....++.
T Consensus 37 v~~~Lr~~~~~Lr~dl~~li~ 57 (112)
T d1nzea_ 37 LQNDLRLRASYLRYDLKTVIS 57 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999878789999999987
No 8
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.69 E-value=1e+02 Score=5.74 Aligned_cols=25 Identities=28% Similarity=0.760 Sum_probs=0.0
Q ss_pred CCCCHHHHHHH---HHHHHHHHHHHCCC
Q ss_conf 88724899999---99999999952032
Q 000924 1186 RVPSWMWVLII---ALVVFALFLLGNSS 1210 (1222)
Q Consensus 1186 ~~~~WmW~~~A---AlvVlaLfvlGy~y 1210 (1222)
|+.-|+-+.++ ++.++-+|+-|-|+
T Consensus 1 riPLWlv~tv~G~~vi~~vG~FfYGsYs 28 (34)
T d2axtj1 1 RIPLWIVATVAGMGVIVIVGLFFYGAYA 28 (34)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEEEHHHHHHHHHEEEEEEEEEC
T ss_conf 9747976530013067520123444003
No 9
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}
Probab=3.67 E-value=1e+02 Score=5.72 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1799999999996999999979999996799999999999---9999999999999999999999999999
Q 000924 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYA---EKLEAAISDERSARESLKSKRQEIDSVQ 729 (1222)
Q Consensus 662 DEeLKAKIdeLeKEIeELKqkRdeI~aELkalRaERdELi---EQLKeLReE~KqlReeidEKIKELesLQ 729 (1222)
.+.+..+|+.++.+|-.+-..|..+..++..++.....-+ ++-..+......+...+..-+..-..+|
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~~~~~I~~~K~~~~~~i~dp~RE~~il~~~~~i~~if~~I~~~S~~~Q 73 (74)
T d1ybza1 3 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKELNLPIEDRKREEEVLRRAGEFREIFEKILEVSKDVQ 73 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999988598999848999999999999999999999999862
No 10
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=3.56 E-value=1.1e+02 Score=5.61 Aligned_cols=175 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999973005999787999999777886208889399999999999
Q 000924 694 RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIK 773 (1222)
Q Consensus 694 RaERdELiEQLKeLReE~KqlReeidEKIKELesLQeaLnKLRnAKSVEEIDakIk~LE~RIQTeSLSLeEEKKLIKEIK 773 (1222)
+.....|...+..+....+.+..........-..+......+.. .....+...+..+...+.. ..+.+-....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 76 (185)
T d2ap3a1 4 KKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVNS-KDTAVRGKAVKDLIKNADD------RLKEFEKEED 76 (185)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGGGC-SSHHHHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_conf 88999999999999999988999999999999988888989999-9888766556899998888------8888988898
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999985310022158978776799--999999999999999999999999999999999999999999999988999
Q 000924 774 QLKQRREQISSSIGEHDEVQLAFDQKD--QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAA 851 (1222)
Q Consensus 774 QLKKsRekViAnAa~KAKIQESidQKE--aIqEQIKaLKKEIDELRkKLkkLkaElKAIkKKiDELkeEI~ELqEElkAL 851 (1222)
.|......+.................. .....+..+...+..+...+..+......+...+......+..+...+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 156 (185)
T d2ap3a1 77 AIKKSEQDFKKAKSHVDNIDNDVKRKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAI 156 (185)
T ss_dssp HHHHHHHHHTTC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87899999999999988888888877788877889999999999999999888666779999976676799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999899999999989899
Q 000924 852 DEIRQEAYKHWQSLKKQAYDKNQH 875 (1222)
Q Consensus 852 dEkRDEAYEeLkELRKErDEkNke 875 (1222)
.......-..+..+.......+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~e 180 (185)
T d2ap3a1 157 EQNYKKLKEVSDKYTKVLNKVQKE 180 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999998
Done!