Query 000925
Match_columns 1222
No_of_seqs 633 out of 3725
Neff 5.7
Searched_HMMs 46136
Date Tue Apr 2 00:52:53 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 3.1E-65 6.6E-70 590.6 38.2 545 445-1197 181-780 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 6.9E-62 1.5E-66 571.9 31.6 475 465-1193 193-681 (693)
3 KOG0737 AAA+-type ATPase [Post 100.0 3.4E-54 7.3E-59 481.7 27.6 378 829-1213 6-386 (386)
4 TIGR01243 CDC48 AAA family ATP 100.0 4.2E-52 9E-57 521.7 38.5 539 449-1208 173-730 (733)
5 KOG0736 Peroxisome assembly fa 100.0 1.1E-49 2.3E-54 471.2 37.3 442 660-1194 478-940 (953)
6 COG0464 SpoVK ATPases of the A 100.0 2.5E-44 5.4E-49 433.4 34.2 410 660-1191 64-488 (494)
7 KOG0738 AAA+-type ATPase [Post 100.0 4.5E-45 9.7E-50 407.3 23.5 284 913-1209 205-490 (491)
8 COG1222 RPT1 ATP-dependent 26S 100.0 1.7E-44 3.7E-49 401.6 24.0 247 914-1189 145-395 (406)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 4.1E-44 9E-49 415.5 23.8 296 916-1214 186-521 (802)
10 KOG0735 AAA+-type ATPase [Post 100.0 9.3E-41 2E-45 392.2 29.3 297 821-1148 595-893 (952)
11 KOG0739 AAA+-type ATPase [Post 100.0 4E-41 8.6E-46 364.6 16.8 300 906-1211 119-439 (439)
12 KOG0741 AAA+-type ATPase [Post 100.0 1.7E-40 3.6E-45 380.2 19.3 371 676-1137 325-720 (744)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 6E-36 1.3E-40 357.2 32.8 412 660-1208 67-485 (489)
14 KOG0734 AAA+-type ATPase conta 100.0 1.2E-36 2.6E-41 348.8 20.7 266 914-1210 298-565 (752)
15 KOG0740 AAA+-type ATPase [Post 100.0 1.2E-35 2.5E-40 343.6 18.9 279 915-1211 148-427 (428)
16 KOG0652 26S proteasome regulat 100.0 5.4E-35 1.2E-39 312.1 18.5 244 914-1187 165-413 (424)
17 KOG0728 26S proteasome regulat 100.0 4.1E-34 8.9E-39 304.0 20.6 244 916-1188 143-390 (404)
18 KOG0727 26S proteasome regulat 100.0 5E-34 1.1E-38 303.6 20.7 247 911-1186 146-396 (408)
19 KOG0726 26S proteasome regulat 100.0 1.2E-34 2.5E-39 313.6 14.1 243 916-1187 181-427 (440)
20 KOG0731 AAA+-type ATPase conta 100.0 3.5E-33 7.5E-38 338.9 23.0 248 913-1190 304-557 (774)
21 COG1223 Predicted ATPase (AAA+ 100.0 2.8E-33 6E-38 299.7 18.6 242 916-1190 117-359 (368)
22 PTZ00454 26S protease regulato 100.0 9.3E-33 2E-37 323.5 24.5 246 914-1188 139-388 (398)
23 KOG0730 AAA+-type ATPase [Post 100.0 1.9E-33 4.1E-38 332.2 18.2 264 916-1216 181-446 (693)
24 PRK03992 proteasome-activating 100.0 7.3E-32 1.6E-36 316.2 24.7 250 915-1193 126-379 (389)
25 KOG0729 26S proteasome regulat 100.0 1.4E-32 3E-37 294.4 16.1 248 914-1190 171-422 (435)
26 PTZ00361 26 proteosome regulat 100.0 5.6E-31 1.2E-35 310.6 22.6 245 915-1188 178-426 (438)
27 TIGR01241 FtsH_fam ATP-depende 100.0 9.5E-31 2.1E-35 315.8 24.4 270 912-1211 47-320 (495)
28 COG0465 HflB ATP-dependent Zn 100.0 6.8E-31 1.5E-35 314.8 20.2 252 914-1195 144-399 (596)
29 TIGR01243 CDC48 AAA family ATP 100.0 7.3E-30 1.6E-34 321.2 22.8 289 915-1214 173-463 (733)
30 TIGR01242 26Sp45 26S proteasom 100.0 5.4E-29 1.2E-33 289.8 23.4 244 914-1186 116-363 (364)
31 KOG0732 AAA+-type ATPase conta 100.0 1.4E-30 3.1E-35 322.7 8.8 403 614-1105 299-728 (1080)
32 TIGR03689 pup_AAA proteasome A 100.0 2E-28 4.3E-33 292.7 25.3 274 913-1212 175-503 (512)
33 CHL00176 ftsH cell division pr 100.0 1.9E-28 4.1E-33 301.0 22.1 244 914-1187 177-424 (638)
34 KOG0732 AAA+-type ATPase conta 100.0 1E-28 2.3E-33 306.3 18.1 349 801-1194 176-533 (1080)
35 KOG0651 26S proteasome regulat 100.0 7.3E-29 1.6E-33 271.8 13.2 243 916-1187 128-374 (388)
36 PRK10733 hflB ATP-dependent me 100.0 1.9E-27 4.1E-32 294.5 24.0 249 914-1192 146-398 (644)
37 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.5E-26 3.3E-31 296.2 20.1 189 947-1143 1623-1860(2281)
38 KOG0741 AAA+-type ATPase [Post 99.9 1.1E-26 2.3E-31 267.4 12.3 262 917-1192 216-496 (744)
39 COG1222 RPT1 ATP-dependent 26S 99.9 3.2E-26 6.8E-31 256.1 12.1 232 448-886 145-393 (406)
40 PLN00020 ribulose bisphosphate 99.9 2.9E-24 6.3E-29 244.0 24.2 188 952-1143 145-354 (413)
41 KOG0738 AAA+-type ATPase [Post 99.9 1.2E-25 2.6E-30 252.3 12.7 259 437-888 196-472 (491)
42 KOG0737 AAA+-type ATPase [Post 99.9 3E-25 6.5E-30 249.7 10.8 233 434-856 72-317 (386)
43 KOG0736 Peroxisome assembly fa 99.9 1.5E-22 3.3E-27 241.7 15.5 249 956-1214 432-682 (953)
44 KOG0735 AAA+-type ATPase [Post 99.9 1E-21 2.2E-26 232.6 14.2 261 920-1214 408-677 (952)
45 TIGR02639 ClpA ATP-dependent C 99.9 6.2E-20 1.3E-24 231.3 30.6 201 921-1141 455-712 (731)
46 PRK11034 clpA ATP-dependent Cl 99.9 9.7E-20 2.1E-24 228.0 30.6 165 921-1105 459-668 (758)
47 KOG0739 AAA+-type ATPase [Post 99.8 7.2E-22 1.6E-26 215.5 7.7 222 435-848 115-348 (439)
48 CHL00181 cbbX CbbX; Provisiona 99.8 6E-19 1.3E-23 199.5 19.5 237 921-1182 24-282 (287)
49 KOG0734 AAA+-type ATPase conta 99.8 7.2E-20 1.6E-24 211.7 10.5 221 439-852 289-523 (752)
50 TIGR02880 cbbX_cfxQ probable R 99.8 1.6E-18 3.5E-23 195.9 18.1 237 921-1182 23-281 (284)
51 TIGR02881 spore_V_K stage V sp 99.8 2.2E-18 4.7E-23 192.3 16.8 216 919-1146 5-244 (261)
52 KOG0744 AAA+-type ATPase [Post 99.8 1.1E-18 2.5E-23 192.8 11.8 197 907-1105 129-342 (423)
53 KOG0742 AAA+-type ATPase [Post 99.8 8.8E-18 1.9E-22 189.6 17.6 208 917-1135 352-587 (630)
54 PF00004 AAA: ATPase family as 99.8 3.3E-18 7.2E-23 168.6 11.8 130 958-1089 1-132 (132)
55 CHL00095 clpC Clp protease ATP 99.8 2E-16 4.3E-21 201.9 30.5 166 920-1105 509-734 (821)
56 CHL00195 ycf46 Ycf46; Provisio 99.8 3.9E-18 8.5E-23 204.7 13.3 248 430-888 207-466 (489)
57 TIGR03345 VI_ClpV1 type VI sec 99.7 5E-16 1.1E-20 197.9 32.6 200 921-1143 567-833 (852)
58 PRK10865 protein disaggregatio 99.7 3.6E-16 7.8E-21 199.7 28.0 166 920-1105 568-781 (857)
59 KOG0731 AAA+-type ATPase conta 99.7 6E-18 1.3E-22 206.9 10.7 218 446-854 303-537 (774)
60 COG0464 SpoVK ATPases of the A 99.7 7E-17 1.5E-21 195.6 18.8 249 938-1214 2-252 (494)
61 TIGR03346 chaperone_ClpB ATP-d 99.7 1.8E-15 3.9E-20 193.8 32.2 204 920-1143 565-828 (852)
62 KOG0740 AAA+-type ATPase [Post 99.7 1.4E-17 3.1E-22 193.9 10.1 212 449-852 148-373 (428)
63 KOG0728 26S proteasome regulat 99.7 2E-17 4.4E-22 177.3 8.5 211 468-885 159-388 (404)
64 KOG0726 26S proteasome regulat 99.7 9.3E-18 2E-22 183.1 5.9 227 451-884 182-425 (440)
65 PTZ00454 26S protease regulato 99.7 3.2E-17 7E-22 192.9 10.7 215 447-853 138-369 (398)
66 PRK03992 proteasome-activating 99.7 4.9E-17 1.1E-21 191.4 12.1 234 447-887 124-374 (389)
67 CHL00206 ycf2 Ycf2; Provisiona 99.7 7.2E-17 1.6E-21 208.7 11.8 132 658-854 1718-1861(2281)
68 COG0542 clpA ATP-binding subun 99.7 3E-15 6.5E-20 184.8 25.4 362 665-1105 252-707 (786)
69 PF05496 RuvB_N: Holliday junc 99.7 6.2E-16 1.3E-20 167.0 13.1 197 917-1136 21-225 (233)
70 KOG0743 AAA+-type ATPase [Post 99.6 1.9E-15 4.2E-20 175.1 17.1 219 917-1146 198-429 (457)
71 TIGR02639 ClpA ATP-dependent C 99.6 2.5E-15 5.5E-20 189.8 19.4 184 917-1125 179-385 (731)
72 KOG0729 26S proteasome regulat 99.6 3.2E-16 6.9E-21 169.3 8.1 211 449-852 172-400 (435)
73 TIGR01241 FtsH_fam ATP-depende 99.6 3.7E-16 8E-21 189.4 9.7 216 444-852 45-277 (495)
74 COG2256 MGS1 ATPase related to 99.6 8E-15 1.7E-19 167.6 18.4 176 916-1131 20-212 (436)
75 PTZ00361 26 proteosome regulat 99.6 5.6E-16 1.2E-20 183.9 9.1 215 449-854 178-408 (438)
76 COG0465 HflB ATP-dependent Zn 99.6 9.8E-16 2.1E-20 185.1 9.7 217 446-856 142-376 (596)
77 KOG0652 26S proteasome regulat 99.6 1.1E-15 2.3E-20 164.9 8.8 212 449-853 166-395 (424)
78 TIGR00635 ruvB Holliday juncti 99.6 2.8E-14 6E-19 162.2 20.7 198 918-1138 2-207 (305)
79 PRK00080 ruvB Holliday junctio 99.6 4.9E-14 1.1E-18 162.5 22.5 200 917-1139 22-229 (328)
80 KOG0727 26S proteasome regulat 99.6 2.5E-15 5.4E-20 161.5 10.7 216 446-852 147-378 (408)
81 CHL00176 ftsH cell division pr 99.6 2.2E-15 4.8E-20 186.2 10.0 219 443-853 172-406 (638)
82 PRK11034 clpA ATP-dependent Cl 99.6 3.4E-14 7.4E-19 178.6 18.0 197 918-1138 184-407 (758)
83 TIGR00763 lon ATP-dependent pr 99.6 3.4E-14 7.3E-19 180.7 18.2 212 921-1144 321-558 (775)
84 TIGR02902 spore_lonB ATP-depen 99.5 6.8E-14 1.5E-18 170.9 17.8 218 916-1184 61-330 (531)
85 PRK12323 DNA polymerase III su 99.5 1.9E-13 4.1E-18 166.3 19.6 185 916-1137 12-230 (700)
86 TIGR03345 VI_ClpV1 type VI sec 99.5 2.8E-13 6E-18 173.1 20.9 185 917-1126 184-391 (852)
87 TIGR01242 26Sp45 26S proteasom 99.5 1.8E-14 3.9E-19 168.3 9.3 216 447-853 115-346 (364)
88 PRK10733 hflB ATP-dependent me 99.5 2.6E-14 5.7E-19 178.0 11.2 219 442-853 140-375 (644)
89 COG2255 RuvB Holliday junction 99.5 2E-13 4.3E-18 150.3 16.0 189 916-1126 22-218 (332)
90 KOG2028 ATPase related to the 99.5 9.3E-13 2E-17 148.0 19.8 214 917-1193 135-375 (554)
91 PRK07003 DNA polymerase III su 99.5 4E-13 8.7E-18 165.1 17.7 185 916-1137 12-225 (830)
92 PRK14956 DNA polymerase III su 99.5 5.1E-13 1.1E-17 159.1 17.8 183 916-1135 14-225 (484)
93 KOG0651 26S proteasome regulat 99.5 9.3E-14 2E-18 153.9 10.1 211 450-852 128-355 (388)
94 CHL00095 clpC Clp protease ATP 99.5 6E-13 1.3E-17 170.3 18.5 184 918-1126 177-382 (821)
95 PLN00020 ribulose bisphosphate 99.5 1E-13 2.2E-18 158.7 10.2 207 452-851 113-352 (413)
96 COG1223 Predicted ATPase (AAA+ 99.5 1E-13 2.2E-18 150.2 9.0 205 450-852 117-337 (368)
97 PRK10865 protein disaggregatio 99.5 4.9E-13 1.1E-17 171.3 16.7 182 918-1124 176-380 (857)
98 TIGR03346 chaperone_ClpB ATP-d 99.5 1E-12 2.3E-17 168.6 19.0 183 918-1125 171-376 (852)
99 PRK14949 DNA polymerase III su 99.4 1.6E-12 3.4E-17 162.6 19.1 191 916-1137 12-225 (944)
100 TIGR00390 hslU ATP-dependent p 99.4 7E-13 1.5E-17 154.9 14.9 178 922-1099 14-342 (441)
101 PRK14962 DNA polymerase III su 99.4 2.1E-12 4.6E-17 155.4 19.3 183 916-1135 10-221 (472)
102 PRK13342 recombination factor 99.4 3.2E-12 7E-17 152.0 20.6 181 917-1138 9-202 (413)
103 PRK00149 dnaA chromosomal repl 99.4 1.4E-12 3.1E-17 156.6 17.4 168 956-1137 149-327 (450)
104 PRK14961 DNA polymerase III su 99.4 3.4E-12 7.3E-17 149.4 20.0 186 916-1138 12-226 (363)
105 PRK14960 DNA polymerase III su 99.4 1.8E-12 3.8E-17 158.2 18.0 185 916-1137 11-224 (702)
106 PRK07994 DNA polymerase III su 99.4 2E-12 4.3E-17 159.5 18.4 185 916-1137 12-225 (647)
107 PRK14958 DNA polymerase III su 99.4 2.2E-12 4.9E-17 156.6 18.7 187 916-1139 12-227 (509)
108 PRK05342 clpX ATP-dependent pr 99.4 1.2E-12 2.6E-17 154.9 15.8 185 916-1100 66-322 (412)
109 TIGR00362 DnaA chromosomal rep 99.4 2.3E-12 5E-17 152.7 18.2 168 956-1138 137-316 (405)
110 KOG2004 Mitochondrial ATP-depe 99.4 2.3E-12 5E-17 154.7 16.8 174 920-1105 411-598 (906)
111 TIGR03689 pup_AAA proteasome A 99.4 4.6E-13 9.9E-18 161.4 10.3 223 447-852 175-412 (512)
112 PRK04195 replication factor C 99.4 4E-12 8.6E-17 154.1 18.0 186 916-1132 10-203 (482)
113 PRK06645 DNA polymerase III su 99.4 6.5E-12 1.4E-16 151.9 19.7 185 916-1137 17-234 (507)
114 PRK05201 hslU ATP-dependent pr 99.4 3.3E-12 7.3E-17 149.3 15.8 179 921-1099 16-344 (443)
115 PRK14964 DNA polymerase III su 99.4 5.7E-12 1.2E-16 151.5 18.1 186 916-1138 9-223 (491)
116 PLN03025 replication factor C 99.4 6.7E-12 1.5E-16 144.3 17.8 181 916-1134 9-202 (319)
117 PRK07940 DNA polymerase III su 99.4 4.9E-12 1.1E-16 149.2 16.9 192 918-1134 3-216 (394)
118 COG0466 Lon ATP-dependent Lon 99.4 1.4E-12 3E-17 157.6 12.4 172 921-1104 324-509 (782)
119 PRK08691 DNA polymerase III su 99.4 6.5E-12 1.4E-16 154.6 18.1 186 916-1138 12-226 (709)
120 TIGR02928 orc1/cdc6 family rep 99.4 2.8E-11 6.1E-16 140.8 22.7 202 920-1142 15-256 (365)
121 PRK14951 DNA polymerase III su 99.4 1.2E-11 2.6E-16 152.3 20.3 186 916-1138 12-231 (618)
122 PRK00411 cdc6 cell division co 99.4 4.6E-11 9.9E-16 140.6 22.1 201 919-1140 29-262 (394)
123 PRK12422 chromosomal replicati 99.3 2.4E-11 5.3E-16 145.5 19.3 167 956-1136 142-317 (445)
124 PRK07764 DNA polymerase III su 99.3 1.9E-11 4.1E-16 155.1 18.4 183 916-1135 11-224 (824)
125 PRK14086 dnaA chromosomal repl 99.3 1.8E-11 3.9E-16 149.5 17.5 166 956-1136 315-492 (617)
126 TIGR02397 dnaX_nterm DNA polym 99.3 4.3E-11 9.4E-16 138.7 19.6 186 916-1138 10-224 (355)
127 TIGR03420 DnaA_homol_Hda DnaA 99.3 6.1E-11 1.3E-15 128.7 19.5 186 916-1138 11-207 (226)
128 PHA02544 44 clamp loader, smal 99.3 3.4E-11 7.4E-16 137.7 18.5 157 916-1104 17-174 (316)
129 TIGR00382 clpX endopeptidase C 99.3 1.3E-11 2.9E-16 145.7 15.5 184 918-1101 74-329 (413)
130 PRK14959 DNA polymerase III su 99.3 3E-11 6.4E-16 148.2 18.8 181 916-1132 12-221 (624)
131 PRK05563 DNA polymerase III su 99.3 2.5E-11 5.5E-16 149.2 18.3 184 916-1136 12-224 (559)
132 PRK12402 replication factor C 99.3 3.8E-11 8.1E-16 137.9 18.2 188 916-1135 11-229 (337)
133 PRK13341 recombination factor 99.3 5.1E-11 1.1E-15 149.7 20.6 182 916-1138 24-223 (725)
134 PRK08903 DnaA regulatory inact 99.3 1.1E-10 2.3E-15 127.6 20.5 178 916-1135 14-202 (227)
135 PRK14952 DNA polymerase III su 99.3 3.2E-11 7E-16 148.0 18.1 183 916-1135 9-222 (584)
136 PRK14969 DNA polymerase III su 99.3 3.1E-11 6.6E-16 147.5 17.8 185 916-1137 12-225 (527)
137 PRK08084 DNA replication initi 99.3 1.3E-10 2.9E-15 128.3 20.6 183 916-1135 18-212 (235)
138 PRK14957 DNA polymerase III su 99.3 4.5E-11 9.7E-16 145.7 18.4 185 916-1137 12-225 (546)
139 PRK05896 DNA polymerase III su 99.3 5.8E-11 1.3E-15 145.0 18.7 183 916-1135 12-223 (605)
140 KOG0989 Replication factor C, 99.3 3.4E-11 7.4E-16 134.1 15.0 183 916-1132 32-231 (346)
141 PRK14963 DNA polymerase III su 99.3 4.7E-11 1E-15 144.9 17.7 184 916-1136 10-221 (504)
142 PF05673 DUF815: Protein of un 99.3 7E-11 1.5E-15 129.7 16.8 190 916-1135 23-244 (249)
143 PRK10787 DNA-binding ATP-depen 99.3 4.5E-11 9.7E-16 151.7 17.5 171 921-1104 323-507 (784)
144 PRK14088 dnaA chromosomal repl 99.3 5.4E-11 1.2E-15 142.6 17.0 167 956-1136 131-309 (440)
145 PRK14087 dnaA chromosomal repl 99.3 1E-10 2.2E-15 140.5 19.1 169 956-1139 142-326 (450)
146 PRK06893 DNA replication initi 99.3 2.9E-10 6.2E-15 125.1 20.8 156 957-1134 41-205 (229)
147 PRK14965 DNA polymerase III su 99.3 7.4E-11 1.6E-15 145.6 17.7 174 916-1125 12-214 (576)
148 PRK06647 DNA polymerase III su 99.3 9.1E-11 2E-15 144.1 18.0 184 916-1136 12-224 (563)
149 PRK08727 hypothetical protein; 99.3 4E-10 8.6E-15 124.3 21.4 146 956-1124 42-197 (233)
150 COG2812 DnaX DNA polymerase II 99.3 3.4E-11 7.4E-16 144.7 13.8 193 916-1139 12-227 (515)
151 CHL00081 chlI Mg-protoporyphyr 99.3 8.7E-11 1.9E-15 136.2 16.6 167 916-1103 13-232 (350)
152 PRK07133 DNA polymerase III su 99.2 1.4E-10 3E-15 144.2 18.8 189 916-1135 14-222 (725)
153 PTZ00112 origin recognition co 99.2 2.3E-10 5E-15 141.4 20.0 181 920-1122 755-969 (1164)
154 PRK14970 DNA polymerase III su 99.2 2E-10 4.3E-15 134.5 18.5 185 916-1135 13-212 (367)
155 PRK06305 DNA polymerase III su 99.2 2.2E-10 4.7E-15 137.8 19.0 183 916-1135 13-225 (451)
156 PRK13407 bchI magnesium chelat 99.2 9.6E-11 2.1E-15 135.4 14.7 165 917-1103 5-216 (334)
157 COG1221 PspF Transcriptional r 99.2 3.8E-11 8.2E-16 140.3 11.2 273 832-1143 7-312 (403)
158 PRK09111 DNA polymerase III su 99.2 2.2E-10 4.8E-15 141.4 17.9 190 916-1136 20-237 (598)
159 PRK14953 DNA polymerase III su 99.2 2.6E-10 5.7E-15 138.0 18.2 184 916-1136 12-224 (486)
160 TIGR02640 gas_vesic_GvpN gas v 99.2 1.3E-10 2.8E-15 130.3 14.5 141 956-1103 22-198 (262)
161 TIGR02903 spore_lon_C ATP-depe 99.2 3E-10 6.5E-15 141.2 18.7 231 916-1186 150-430 (615)
162 PRK08451 DNA polymerase III su 99.2 2.9E-10 6.3E-15 138.1 18.0 187 916-1139 10-225 (535)
163 PRK14948 DNA polymerase III su 99.2 2.5E-10 5.5E-15 141.6 17.7 182 916-1134 12-224 (620)
164 PRK14955 DNA polymerase III su 99.2 3.3E-10 7.3E-15 134.2 17.9 184 916-1136 12-232 (397)
165 PRK06620 hypothetical protein; 99.2 6.1E-10 1.3E-14 121.5 18.0 143 956-1135 45-192 (214)
166 PRK05642 DNA replication initi 99.2 1.3E-09 2.8E-14 120.4 20.3 157 956-1135 46-211 (234)
167 cd00009 AAA The AAA+ (ATPases 99.2 2.6E-10 5.6E-15 112.2 12.6 123 956-1088 20-150 (151)
168 PRK14950 DNA polymerase III su 99.2 5.5E-10 1.2E-14 138.4 18.0 183 916-1135 12-224 (585)
169 PRK14954 DNA polymerase III su 99.2 7.7E-10 1.7E-14 136.9 18.9 180 916-1126 12-223 (620)
170 PF00308 Bac_DnaA: Bacterial d 99.2 7.6E-10 1.7E-14 121.1 16.7 166 957-1137 36-213 (219)
171 PRK00440 rfc replication facto 99.1 7.3E-10 1.6E-14 126.2 17.2 184 916-1137 13-208 (319)
172 PHA02244 ATPase-like protein 99.1 5.9E-10 1.3E-14 129.1 15.6 129 956-1092 120-263 (383)
173 TIGR01650 PD_CobS cobaltochela 99.1 2.3E-10 5E-15 131.1 11.4 142 956-1103 65-233 (327)
174 TIGR02030 BchI-ChlI magnesium 99.1 1.1E-09 2.3E-14 127.1 16.5 164 918-1103 2-219 (337)
175 TIGR02442 Cob-chelat-sub cobal 99.1 8.2E-10 1.8E-14 138.0 15.6 165 918-1104 2-215 (633)
176 COG3829 RocR Transcriptional r 99.1 6.4E-11 1.4E-15 140.6 5.3 202 916-1138 241-477 (560)
177 KOG0615 Serine/threonine prote 99.1 1E-10 2.2E-15 134.1 6.6 113 132-245 44-167 (475)
178 PF00498 FHA: FHA domain; Int 99.1 3.3E-10 7.1E-15 100.9 8.3 67 154-224 1-68 (68)
179 PRK14971 DNA polymerase III su 99.1 3.4E-09 7.4E-14 131.7 20.0 183 916-1135 13-225 (614)
180 COG0593 DnaA ATPase involved i 99.1 6.9E-09 1.5E-13 122.0 20.9 168 955-1137 113-291 (408)
181 TIGR02974 phageshock_pspF psp 99.1 1.1E-09 2.3E-14 126.9 13.4 176 956-1140 23-233 (329)
182 PRK11608 pspF phage shock prot 99.0 1.2E-09 2.6E-14 126.4 12.8 200 919-1139 5-239 (326)
183 PRK05564 DNA polymerase III su 99.0 7.8E-09 1.7E-13 118.8 18.1 172 918-1126 2-185 (313)
184 KOG0991 Replication factor C, 99.0 3.3E-09 7.1E-14 114.2 13.5 187 916-1136 23-219 (333)
185 COG0542 clpA ATP-binding subun 99.0 3.5E-09 7.5E-14 131.9 15.4 182 918-1124 168-372 (786)
186 COG2204 AtoC Response regulato 99.0 1.2E-09 2.7E-14 129.8 10.9 206 918-1144 139-378 (464)
187 cd00060 FHA Forkhead associate 99.0 1.7E-09 3.8E-14 102.4 9.8 97 134-234 1-101 (102)
188 COG3604 FhlA Transcriptional r 99.0 2E-09 4.4E-14 126.5 12.1 201 916-1140 219-456 (550)
189 PRK09087 hypothetical protein; 99.0 6.2E-09 1.3E-13 114.6 15.2 136 957-1123 46-187 (226)
190 TIGR01817 nifA Nif-specific re 99.0 1.1E-09 2.4E-14 134.5 10.2 209 916-1145 192-433 (534)
191 COG0714 MoxR-like ATPases [Gen 99.0 2.2E-09 4.8E-14 124.2 11.9 142 956-1102 44-202 (329)
192 TIGR02329 propionate_PrpR prop 99.0 1.9E-09 4.2E-14 131.6 11.7 202 917-1139 209-449 (526)
193 PRK15424 propionate catabolism 99.0 3E-09 6.5E-14 129.9 13.2 202 917-1139 216-464 (538)
194 PRK09112 DNA polymerase III su 99.0 9.4E-09 2E-13 120.0 16.7 188 917-1136 20-244 (351)
195 PRK05022 anaerobic nitric oxid 99.0 3.1E-09 6.8E-14 129.8 12.8 204 918-1142 185-422 (509)
196 KOG1969 DNA replication checkp 99.0 1.2E-08 2.7E-13 123.8 17.3 166 953-1138 323-513 (877)
197 PRK15429 formate hydrogenlyase 99.0 5.6E-09 1.2E-13 132.0 15.3 204 917-1141 373-610 (686)
198 COG1474 CDC6 Cdc6-related prot 99.0 3.1E-08 6.7E-13 116.2 20.0 200 921-1143 18-248 (366)
199 COG2607 Predicted ATPase (AAA+ 98.9 2.9E-08 6.2E-13 107.9 17.1 190 916-1135 56-276 (287)
200 PRK07471 DNA polymerase III su 98.9 1.3E-08 2.8E-13 119.5 15.8 180 916-1128 15-235 (365)
201 PRK11388 DNA-binding transcrip 98.9 3.6E-09 7.9E-14 132.6 10.7 203 917-1140 322-554 (638)
202 PRK10820 DNA-binding transcrip 98.9 6.7E-09 1.5E-13 127.2 12.7 205 916-1141 200-438 (520)
203 smart00382 AAA ATPases associa 98.9 5.8E-09 1.3E-13 101.3 9.8 127 956-1090 3-147 (148)
204 TIGR02031 BchD-ChlD magnesium 98.9 1.1E-08 2.5E-13 126.7 14.8 212 956-1186 17-258 (589)
205 PF07728 AAA_5: AAA domain (dy 98.9 2.9E-10 6.3E-15 114.6 0.6 112 957-1081 1-139 (139)
206 COG1219 ClpX ATP-dependent pro 98.9 2.6E-09 5.5E-14 119.5 7.9 115 918-1032 58-180 (408)
207 smart00350 MCM minichromosome 98.9 2E-08 4.4E-13 122.7 16.5 175 921-1105 204-402 (509)
208 TIGR00678 holB DNA polymerase 98.9 2.1E-08 4.6E-13 106.6 14.1 144 954-1124 13-184 (188)
209 PRK07399 DNA polymerase III su 98.9 2E-08 4.4E-13 115.6 14.3 180 918-1130 2-220 (314)
210 COG1239 ChlI Mg-chelatase subu 98.9 3.6E-08 7.9E-13 114.9 15.7 166 917-1105 14-234 (423)
211 KOG0745 Putative ATP-dependent 98.9 3.6E-08 7.9E-13 113.9 15.4 73 956-1028 227-305 (564)
212 COG1224 TIP49 DNA helicase TIP 98.8 1.5E-07 3.3E-12 107.0 19.3 107 1014-1138 291-410 (450)
213 TIGR03015 pepcterm_ATPase puta 98.8 1.3E-07 2.8E-12 105.5 18.8 191 957-1187 45-267 (269)
214 PF01078 Mg_chelatase: Magnesi 98.8 1.9E-09 4.1E-14 116.2 3.7 46 918-979 1-46 (206)
215 TIGR00764 lon_rel lon-related 98.8 6.7E-08 1.4E-12 120.3 17.6 50 917-982 15-64 (608)
216 PRK11331 5-methylcytosine-spec 98.8 3.4E-08 7.4E-13 117.3 14.3 142 920-1089 175-357 (459)
217 COG1220 HslU ATP-dependent pro 98.8 1.5E-08 3.2E-13 114.2 9.7 85 1015-1100 251-346 (444)
218 PF07726 AAA_3: ATPase family 98.8 2.8E-09 6E-14 106.8 3.6 118 957-1082 1-130 (131)
219 PRK13531 regulatory ATPase Rav 98.8 1.6E-07 3.5E-12 112.6 18.5 160 921-1102 21-193 (498)
220 PF00158 Sigma54_activat: Sigm 98.8 5.9E-09 1.3E-13 109.7 5.8 128 922-1069 1-143 (168)
221 COG0470 HolB ATPase involved i 98.8 3.5E-08 7.7E-13 112.5 12.5 147 921-1098 2-176 (325)
222 PF07724 AAA_2: AAA domain (Cd 98.8 1.6E-08 3.4E-13 106.9 8.6 114 954-1070 2-130 (171)
223 PRK05707 DNA polymerase III su 98.8 7.8E-08 1.7E-12 111.4 15.1 151 954-1127 21-199 (328)
224 PRK04132 replication factor C 98.8 5.9E-08 1.3E-12 123.2 15.1 157 953-1132 562-732 (846)
225 PRK08058 DNA polymerase III su 98.8 1.4E-07 3.1E-12 109.4 16.3 153 918-1100 3-179 (329)
226 TIGR00368 Mg chelatase-related 98.7 1.6E-07 3.4E-12 114.3 16.7 152 917-1092 189-393 (499)
227 TIGR02915 PEP_resp_reg putativ 98.7 3E-08 6.4E-13 118.9 10.4 201 920-1141 139-373 (445)
228 PF06068 TIP49: TIP49 C-termin 98.7 2.1E-07 4.5E-12 107.5 15.5 93 1015-1125 279-384 (398)
229 PF05621 TniB: Bacterial TniB 98.6 1E-06 2.2E-11 100.0 18.3 177 956-1143 62-272 (302)
230 PRK10923 glnG nitrogen regulat 98.6 2.1E-07 4.6E-12 112.4 13.1 202 919-1141 137-372 (469)
231 PRK06871 DNA polymerase III su 98.6 1E-06 2.2E-11 102.0 17.0 163 926-1126 8-198 (325)
232 PRK07993 DNA polymerase III su 98.6 9.4E-07 2E-11 102.8 16.6 155 953-1128 22-201 (334)
233 PRK08116 hypothetical protein; 98.6 3.2E-07 7E-12 103.6 11.6 161 907-1091 72-250 (268)
234 KOG2035 Replication factor C, 98.5 1.9E-06 4E-11 95.6 16.4 183 917-1130 10-227 (351)
235 PRK11361 acetoacetate metaboli 98.5 4.8E-07 1E-11 108.8 13.0 176 956-1140 167-376 (457)
236 PF13177 DNA_pol3_delta2: DNA 98.5 3.6E-07 7.8E-12 95.7 10.2 133 924-1089 1-160 (162)
237 TIGR00602 rad24 checkpoint pro 98.5 1E-06 2.2E-11 109.7 15.6 195 916-1132 80-324 (637)
238 PRK08769 DNA polymerase III su 98.5 2.2E-06 4.7E-11 99.1 16.2 170 926-1130 10-207 (319)
239 PRK12377 putative replication 98.5 6.4E-07 1.4E-11 100.1 10.9 108 905-1026 59-175 (248)
240 smart00763 AAA_PrkA PrkA AAA d 98.5 1.4E-06 3.1E-11 101.3 14.0 63 918-988 48-118 (361)
241 PTZ00111 DNA replication licen 98.5 3.7E-07 8E-12 115.7 9.9 175 921-1104 451-658 (915)
242 PRK06964 DNA polymerase III su 98.5 1.3E-06 2.9E-11 101.6 13.8 133 953-1102 19-203 (342)
243 PRK15115 response regulator Gl 98.5 1.6E-06 3.4E-11 104.1 14.5 176 956-1140 158-367 (444)
244 PF00004 AAA: ATPase family as 98.5 1.4E-07 3.1E-12 92.9 4.5 55 660-717 45-111 (132)
245 KOG1514 Origin recognition com 98.5 2.8E-06 6E-11 103.8 16.2 228 922-1190 398-659 (767)
246 PRK09862 putative ATP-dependen 98.4 2.7E-06 5.8E-11 103.5 16.1 152 918-1093 189-391 (506)
247 PRK06090 DNA polymerase III su 98.4 4.3E-06 9.4E-11 96.6 17.0 144 925-1101 8-178 (319)
248 TIGR01818 ntrC nitrogen regula 98.4 6.8E-07 1.5E-11 107.7 10.2 201 921-1142 135-369 (463)
249 TIGR03354 VI_FHA type VI secre 98.4 4.2E-07 9.1E-12 107.7 7.8 82 146-232 18-103 (396)
250 KOG2227 Pre-initiation complex 98.4 1.5E-05 3.3E-10 93.9 20.1 240 921-1191 151-420 (529)
251 PRK07952 DNA replication prote 98.4 1.5E-06 3.3E-11 96.9 11.3 107 906-1026 58-174 (244)
252 KOG0742 AAA+-type ATPase [Post 98.4 1.5E-06 3.2E-11 100.1 10.8 140 660-845 430-587 (630)
253 PRK13765 ATP-dependent proteas 98.4 2.6E-06 5.6E-11 106.3 13.2 48 917-980 28-75 (637)
254 COG3283 TyrR Transcriptional r 98.3 2.7E-06 5.9E-11 96.8 11.0 202 916-1138 200-430 (511)
255 COG0606 Predicted ATPase with 98.3 2.6E-07 5.7E-12 109.2 3.0 47 916-978 175-221 (490)
256 KOG1051 Chaperone HSP104 and r 98.3 1.1E-05 2.3E-10 102.7 17.1 127 921-1069 563-710 (898)
257 PF14532 Sigma54_activ_2: Sigm 98.3 6E-07 1.3E-11 91.1 4.2 106 956-1091 22-137 (138)
258 PRK13406 bchD magnesium chelat 98.3 5.6E-06 1.2E-10 102.6 12.7 131 956-1094 26-173 (584)
259 PRK10365 transcriptional regul 98.2 3E-06 6.5E-11 101.4 10.0 175 956-1139 163-371 (441)
260 PRK08181 transposase; Validate 98.2 2.5E-06 5.5E-11 96.4 8.4 69 956-1026 107-179 (269)
261 PF01637 Arch_ATPase: Archaeal 98.2 3.3E-06 7.2E-11 90.8 8.1 180 923-1126 2-229 (234)
262 KOG0990 Replication factor C, 98.2 5E-06 1.1E-10 94.0 9.5 156 916-1105 37-205 (360)
263 KOG0744 AAA+-type ATPase [Post 98.2 1.8E-06 4E-11 97.3 5.5 74 443-521 131-204 (423)
264 PRK08699 DNA polymerase III su 98.1 9.3E-06 2E-10 94.3 10.9 132 953-1101 19-183 (325)
265 PF03215 Rad17: Rad17 cell cyc 98.1 3.9E-05 8.4E-10 94.1 16.4 196 916-1132 15-264 (519)
266 PRK06835 DNA replication prote 98.1 6.2E-06 1.4E-10 95.8 8.1 111 956-1081 184-305 (329)
267 KOG1942 DNA helicase, TBP-inte 98.1 3.8E-05 8.1E-10 85.7 13.1 90 1014-1121 296-399 (456)
268 KOG0482 DNA replication licens 98.1 4.5E-05 9.9E-10 90.1 14.4 210 921-1143 343-592 (721)
269 PF13173 AAA_14: AAA domain 98.1 8E-06 1.7E-10 81.8 7.3 69 956-1026 3-73 (128)
270 PRK08939 primosomal protein Dn 98.1 1.7E-05 3.6E-10 91.4 10.9 70 955-1026 156-229 (306)
271 PRK06526 transposase; Provisio 98.0 6.8E-06 1.5E-10 92.3 6.7 70 955-1026 98-171 (254)
272 KOG2680 DNA helicase TIP49, TB 98.0 8.6E-05 1.9E-09 83.2 14.8 112 1014-1143 288-412 (454)
273 COG1484 DnaC DNA replication p 98.0 2E-05 4.3E-10 88.6 9.8 70 955-1026 105-179 (254)
274 PF13401 AAA_22: AAA domain; P 98.0 2.8E-05 6.1E-10 77.0 9.5 72 956-1027 5-100 (131)
275 PF01695 IstB_IS21: IstB-like 98.0 4.4E-06 9.6E-11 88.9 3.7 69 955-1025 47-119 (178)
276 smart00240 FHA Forkhead associ 98.0 1.2E-05 2.5E-10 67.7 5.3 50 154-207 1-52 (52)
277 PRK09183 transposase/IS protei 97.9 2.1E-05 4.7E-10 88.5 8.2 71 955-1026 102-176 (259)
278 PLN02927 antheraxanthin epoxid 97.9 2E-05 4.4E-10 98.9 8.4 84 143-231 545-642 (668)
279 PRK06921 hypothetical protein; 97.9 2.2E-05 4.7E-10 88.8 7.6 67 956-1025 118-188 (266)
280 cd01120 RecA-like_NTPases RecA 97.9 5.7E-05 1.2E-09 76.5 9.8 71 958-1028 2-99 (165)
281 COG3284 AcoR Transcriptional a 97.9 3.1E-05 6.7E-10 94.6 8.5 177 956-1139 337-539 (606)
282 PF12775 AAA_7: P-loop contain 97.9 2.6E-05 5.7E-10 88.5 7.5 139 956-1105 34-195 (272)
283 COG1241 MCM2 Predicted ATPase 97.8 2.3E-05 4.9E-10 97.7 6.9 176 921-1106 287-486 (682)
284 PF00493 MCM: MCM2/3/5 family 97.8 2.9E-06 6.3E-11 98.7 -0.8 175 921-1106 25-224 (331)
285 PRK05917 DNA polymerase III su 97.8 0.00018 3.9E-09 82.1 13.4 121 953-1090 17-154 (290)
286 PF05729 NACHT: NACHT domain 97.8 0.0001 2.2E-09 75.3 10.3 140 957-1105 2-165 (166)
287 KOG0478 DNA replication licens 97.8 0.00045 9.8E-09 84.6 16.6 174 921-1104 430-627 (804)
288 KOG0480 DNA replication licens 97.7 0.00025 5.3E-09 86.3 13.0 201 921-1137 346-571 (764)
289 PF12774 AAA_6: Hydrolytic ATP 97.7 0.00018 3.8E-09 79.9 11.0 130 956-1098 33-175 (231)
290 PRK07276 DNA polymerase III su 97.7 0.00094 2E-08 76.5 16.3 118 953-1089 22-162 (290)
291 COG1716 FOG: FHA domain [Signa 97.7 0.00018 3.8E-09 76.6 9.6 76 146-228 83-159 (191)
292 PRK05818 DNA polymerase III su 97.6 0.00055 1.2E-08 77.0 13.2 121 953-1090 5-147 (261)
293 TIGR00763 lon ATP-dependent pr 97.6 0.00033 7.2E-09 90.3 12.5 35 492-528 347-381 (775)
294 PF00931 NB-ARC: NB-ARC domain 97.6 0.00038 8.3E-09 78.3 11.6 156 955-1132 19-202 (287)
295 COG4650 RtcR Sigma54-dependent 97.6 0.00012 2.6E-09 81.6 6.9 132 957-1098 210-367 (531)
296 PRK07132 DNA polymerase III su 97.5 0.0013 2.8E-08 75.8 14.7 125 955-1101 18-160 (299)
297 KOG2228 Origin recognition com 97.5 0.00033 7.2E-09 80.1 9.3 161 921-1103 25-219 (408)
298 KOG0477 DNA replication licens 97.5 0.0001 2.3E-09 88.9 5.5 164 899-1086 437-628 (854)
299 CHL00181 cbbX CbbX; Provisiona 97.5 0.00049 1.1E-08 78.8 10.6 128 676-856 123-260 (287)
300 KOG1970 Checkpoint RAD17-RFC c 97.5 0.0039 8.5E-08 75.4 17.7 199 917-1138 79-318 (634)
301 COG1618 Predicted nucleotide k 97.4 0.00066 1.4E-08 70.8 9.7 24 956-979 6-29 (179)
302 PRK05342 clpX ATP-dependent pr 97.4 0.0021 4.6E-08 77.1 14.5 85 443-530 59-144 (412)
303 PF00910 RNA_helicase: RNA hel 97.3 0.0004 8.7E-09 67.8 6.6 23 958-980 1-23 (107)
304 cd01124 KaiC KaiC is a circadi 97.3 0.0013 2.7E-08 69.4 10.1 71 958-1028 2-109 (187)
305 TIGR02880 cbbX_cfxQ probable R 97.3 0.0014 3.1E-08 74.9 10.8 82 675-794 121-208 (284)
306 TIGR02237 recomb_radB DNA repa 97.3 0.00091 2E-08 72.3 8.8 73 956-1028 13-111 (209)
307 COG5271 MDN1 AAA ATPase contai 97.2 0.00035 7.7E-09 90.7 6.1 138 956-1104 1544-1704(4600)
308 PF03969 AFG1_ATPase: AFG1-lik 97.2 0.0008 1.7E-08 79.4 8.7 103 952-1070 59-168 (362)
309 KOG1881 Anion exchanger adapto 97.2 0.0012 2.5E-08 81.3 10.0 89 151-241 176-272 (793)
310 TIGR02881 spore_V_K stage V sp 97.2 0.0035 7.5E-08 70.6 13.1 34 483-518 33-66 (261)
311 TIGR01618 phage_P_loop phage n 97.2 0.00084 1.8E-08 74.0 7.8 75 952-1028 9-95 (220)
312 PHA00729 NTP-binding motif con 97.2 0.00062 1.4E-08 75.1 6.5 27 956-982 18-44 (226)
313 COG3267 ExeA Type II secretory 97.2 0.0074 1.6E-07 67.4 14.8 174 957-1142 53-255 (269)
314 COG3456 Predicted component of 97.2 0.0005 1.1E-08 80.4 5.8 76 150-235 24-102 (430)
315 KOG1968 Replication factor C, 97.1 0.00086 1.9E-08 86.3 7.9 162 958-1138 360-534 (871)
316 KOG2170 ATPase of the AAA+ sup 97.1 0.0071 1.5E-07 68.8 14.0 130 922-1070 84-225 (344)
317 KOG1051 Chaperone HSP104 and r 97.1 0.0028 6.1E-08 81.3 12.1 139 956-1105 209-365 (898)
318 PF05707 Zot: Zonular occluden 97.1 0.00058 1.2E-08 73.5 5.0 121 958-1088 3-144 (193)
319 PF14516 AAA_35: AAA-like doma 97.1 0.016 3.4E-07 67.9 16.9 164 954-1125 30-233 (331)
320 PF13207 AAA_17: AAA domain; P 97.1 0.00045 9.7E-09 67.8 3.5 31 958-988 2-32 (121)
321 cd01121 Sms Sms (bacterial rad 97.0 0.0024 5.3E-08 75.7 10.1 97 954-1050 81-196 (372)
322 PRK00080 ruvB Holliday junctio 97.0 0.0065 1.4E-07 70.7 13.6 60 452-525 23-82 (328)
323 PLN03210 Resistant to P. syrin 97.0 0.0043 9.3E-08 83.6 13.7 52 918-981 182-233 (1153)
324 PRK11823 DNA repair protein Ra 97.0 0.0029 6.2E-08 76.8 10.3 96 954-1049 79-193 (446)
325 PRK08118 topology modulation p 97.0 0.0013 2.9E-08 69.3 6.3 33 956-988 2-34 (167)
326 PF05673 DUF815: Protein of un 96.9 0.024 5.2E-07 63.4 15.9 125 660-810 93-226 (249)
327 PF03266 NTPase_1: NTPase; In 96.9 0.00048 1.1E-08 72.9 2.4 23 957-979 1-23 (168)
328 PRK09361 radB DNA repair and r 96.8 0.0038 8.2E-08 68.4 8.7 34 956-989 24-60 (225)
329 PRK07261 topology modulation p 96.8 0.0023 5.1E-08 67.7 6.8 33 957-989 2-34 (171)
330 PF13191 AAA_16: AAA ATPase do 96.8 0.0025 5.4E-08 66.6 6.8 59 922-991 2-63 (185)
331 PRK00771 signal recognition pa 96.8 0.028 6E-07 68.2 16.0 36 954-989 94-132 (437)
332 PRK00131 aroK shikimate kinase 96.7 0.0013 2.9E-08 68.1 4.1 34 954-987 3-36 (175)
333 KOG0479 DNA replication licens 96.7 0.0048 1E-07 74.7 9.1 171 921-1104 302-499 (818)
334 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0058 1.3E-07 69.3 9.0 93 917-1024 57-159 (264)
335 PHA02624 large T antigen; Prov 96.7 0.0014 3.1E-08 80.7 4.3 119 956-1089 432-561 (647)
336 PRK15455 PrkA family serine pr 96.7 0.0023 4.9E-08 78.7 5.9 63 918-988 74-137 (644)
337 TIGR00635 ruvB Holliday juncti 96.6 0.014 3.1E-07 66.7 12.1 61 452-526 2-62 (305)
338 TIGR02012 tigrfam_recA protein 96.6 0.0078 1.7E-07 70.0 9.8 74 956-1029 56-148 (321)
339 PRK08533 flagellar accessory p 96.6 0.012 2.6E-07 65.4 10.9 73 955-1027 24-130 (230)
340 PRK04841 transcriptional regul 96.6 0.024 5.1E-07 74.2 15.5 153 956-1126 33-220 (903)
341 PRK00149 dnaA chromosomal repl 96.6 0.0048 1E-07 75.0 8.2 57 449-519 117-173 (450)
342 cd01131 PilT Pilus retraction 96.6 0.0038 8.3E-08 67.6 6.5 66 958-1023 4-83 (198)
343 PRK04296 thymidine kinase; Pro 96.5 0.017 3.6E-07 62.3 10.7 68 958-1026 5-90 (190)
344 cd00983 recA RecA is a bacter 96.5 0.011 2.3E-07 69.0 9.5 74 956-1029 56-148 (325)
345 PF13604 AAA_30: AAA domain; P 96.4 0.0063 1.4E-07 65.9 7.0 32 957-988 20-54 (196)
346 COG1373 Predicted ATPase (AAA+ 96.4 0.016 3.6E-07 69.4 11.1 121 957-1097 39-161 (398)
347 KOG0481 DNA replication licens 96.4 0.0072 1.6E-07 72.3 7.7 172 921-1103 332-528 (729)
348 PF13671 AAA_33: AAA domain; P 96.4 0.0051 1.1E-07 61.9 5.7 27 958-984 2-28 (143)
349 cd00544 CobU Adenosylcobinamid 96.4 0.015 3.4E-07 61.6 9.5 71 958-1030 2-89 (169)
350 cd01394 radB RadB. The archaea 96.4 0.013 2.9E-07 63.7 9.3 34 956-989 20-56 (218)
351 PRK05800 cobU adenosylcobinami 96.4 0.02 4.3E-07 60.9 10.2 69 957-1029 3-91 (170)
352 PRK13695 putative NTPase; Prov 96.4 0.013 2.8E-07 61.8 8.8 23 957-979 2-24 (174)
353 COG1219 ClpX ATP-dependent pro 96.3 0.0025 5.4E-08 72.6 3.4 68 461-530 66-133 (408)
354 PRK09376 rho transcription ter 96.3 0.0079 1.7E-07 71.3 7.5 71 957-1027 171-269 (416)
355 PRK03839 putative kinase; Prov 96.3 0.0029 6.3E-08 66.9 3.6 31 957-987 2-32 (180)
356 PRK13947 shikimate kinase; Pro 96.3 0.0031 6.6E-08 65.9 3.7 31 957-987 3-33 (171)
357 TIGR00416 sms DNA repair prote 96.2 0.017 3.6E-07 70.4 10.0 75 954-1028 93-184 (454)
358 cd00464 SK Shikimate kinase (S 96.2 0.004 8.7E-08 63.5 3.9 31 957-987 1-31 (154)
359 PRK14974 cell division protein 96.2 0.027 5.9E-07 66.0 11.1 34 955-988 140-176 (336)
360 cd01128 rho_factor Transcripti 96.2 0.033 7.1E-07 62.8 11.3 26 956-981 17-42 (249)
361 cd03283 ABC_MutS-like MutS-lik 96.2 0.022 4.8E-07 61.9 9.6 69 956-1024 26-115 (199)
362 PRK06067 flagellar accessory p 96.2 0.04 8.7E-07 60.9 11.8 73 955-1027 25-133 (234)
363 KOG3347 Predicted nucleotide k 96.2 0.0036 7.9E-08 64.6 3.2 32 956-987 8-39 (176)
364 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.029 6.4E-07 62.3 10.7 39 949-988 16-57 (237)
365 COG3854 SpoIIIAA ncharacterize 96.1 0.024 5.2E-07 62.5 9.4 71 956-1026 138-230 (308)
366 PRK00625 shikimate kinase; Pro 96.1 0.0042 9.1E-08 66.1 3.7 31 957-987 2-32 (173)
367 PF06745 KaiC: KaiC; InterPro 96.1 0.03 6.5E-07 61.5 10.4 92 955-1050 19-147 (226)
368 PRK14722 flhF flagellar biosyn 96.1 0.012 2.7E-07 69.7 7.8 24 956-979 138-161 (374)
369 PF00437 T2SE: Type II/IV secr 96.1 0.0069 1.5E-07 68.3 5.5 96 917-1024 101-207 (270)
370 COG5271 MDN1 AAA ATPase contai 96.1 0.02 4.4E-07 75.6 9.9 134 957-1101 890-1045(4600)
371 PF04665 Pox_A32: Poxvirus A32 96.1 0.052 1.1E-06 60.8 12.2 131 955-1102 13-169 (241)
372 cd00984 DnaB_C DnaB helicase C 96.1 0.039 8.4E-07 60.9 11.2 35 954-988 12-50 (242)
373 PRK13948 shikimate kinase; Pro 96.1 0.0052 1.1E-07 66.0 4.0 36 952-987 7-42 (182)
374 PRK05973 replicative DNA helic 96.1 0.046 9.9E-07 61.2 11.5 36 953-988 62-100 (237)
375 PHA02774 E1; Provisional 96.1 0.024 5.2E-07 70.0 10.0 33 956-988 435-468 (613)
376 PRK06581 DNA polymerase III su 96.1 0.13 2.7E-06 57.7 14.5 131 956-1105 16-163 (263)
377 TIGR02525 plasmid_TraJ plasmid 96.0 0.017 3.6E-07 68.7 8.3 68 957-1024 151-235 (372)
378 PRK14532 adenylate kinase; Pro 96.0 0.0049 1.1E-07 65.6 3.5 30 957-986 2-31 (188)
379 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.005 1.1E-07 65.0 3.5 33 958-992 2-34 (183)
380 COG1485 Predicted ATPase [Gene 96.0 0.05 1.1E-06 63.4 11.7 97 953-1069 63-170 (367)
381 cd01393 recA_like RecA is a b 96.0 0.025 5.5E-07 61.7 9.1 35 956-990 20-63 (226)
382 PRK13949 shikimate kinase; Pro 96.0 0.0049 1.1E-07 65.2 3.4 32 956-987 2-33 (169)
383 PRK10536 hypothetical protein; 96.0 0.033 7.1E-07 62.9 10.0 44 919-978 54-97 (262)
384 TIGR02858 spore_III_AA stage I 96.0 0.013 2.7E-07 66.8 6.8 69 956-1024 112-204 (270)
385 PRK06217 hypothetical protein; 96.0 0.0056 1.2E-07 65.2 3.7 31 957-987 3-33 (183)
386 COG5245 DYN1 Dynein, heavy cha 96.0 0.034 7.3E-07 73.2 10.9 138 955-1105 1494-1660(3164)
387 TIGR00362 DnaA chromosomal rep 96.0 0.014 3.1E-07 69.9 7.5 25 492-518 136-160 (405)
388 PF07693 KAP_NTPase: KAP famil 96.0 0.34 7.4E-06 55.8 18.5 27 954-980 19-45 (325)
389 cd01122 GP4d_helicase GP4d_hel 96.0 0.045 9.7E-07 61.6 11.0 35 954-988 29-67 (271)
390 TIGR01420 pilT_fam pilus retra 95.9 0.012 2.6E-07 69.2 6.5 69 956-1024 123-205 (343)
391 PRK09354 recA recombinase A; P 95.9 0.031 6.6E-07 65.8 9.8 73 956-1028 61-152 (349)
392 TIGR02533 type_II_gspE general 95.9 0.023 5E-07 69.8 9.2 93 916-1024 218-321 (486)
393 PRK00411 cdc6 cell division co 95.9 0.063 1.4E-06 63.7 12.7 54 660-716 125-181 (394)
394 TIGR02688 conserved hypothetic 95.9 0.0081 1.8E-07 71.7 5.0 23 956-978 210-232 (449)
395 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.026 5.6E-07 62.0 8.7 35 956-990 20-63 (235)
396 PRK08233 hypothetical protein; 95.9 0.037 8E-07 58.0 9.5 31 957-987 5-36 (182)
397 PRK13764 ATPase; Provisional 95.9 0.019 4E-07 71.9 8.3 68 956-1024 258-334 (602)
398 PRK06762 hypothetical protein; 95.9 0.015 3.2E-07 60.7 6.3 36 956-991 3-38 (166)
399 PRK10867 signal recognition pa 95.9 0.17 3.8E-06 61.3 16.2 73 954-1026 99-195 (433)
400 cd00046 DEXDc DEAD-like helica 95.9 0.015 3.3E-07 56.3 6.1 23 957-979 2-24 (144)
401 PF06309 Torsin: Torsin; Inte 95.9 0.028 6.1E-07 56.9 7.9 52 921-979 26-77 (127)
402 cd02020 CMPK Cytidine monophos 95.9 0.0066 1.4E-07 61.2 3.5 30 958-987 2-31 (147)
403 cd01428 ADK Adenylate kinase ( 95.9 0.0066 1.4E-07 64.4 3.6 29 958-986 2-30 (194)
404 PRK14531 adenylate kinase; Pro 95.8 0.0071 1.5E-07 64.5 3.8 31 956-986 3-33 (183)
405 PRK14086 dnaA chromosomal repl 95.8 0.023 4.9E-07 71.1 8.6 23 494-518 316-338 (617)
406 TIGR02782 TrbB_P P-type conjug 95.8 0.024 5.2E-07 65.5 8.3 69 956-1024 133-214 (299)
407 KOG2543 Origin recognition com 95.8 0.048 1E-06 64.0 10.6 59 921-990 7-65 (438)
408 PRK12723 flagellar biosynthesi 95.8 0.068 1.5E-06 63.9 12.2 127 955-1095 174-327 (388)
409 cd02021 GntK Gluconate kinase 95.8 0.0071 1.5E-07 61.8 3.5 29 958-986 2-30 (150)
410 PRK10436 hypothetical protein; 95.8 0.029 6.2E-07 68.5 9.1 94 916-1024 194-297 (462)
411 TIGR01313 therm_gnt_kin carboh 95.7 0.0082 1.8E-07 62.3 3.6 28 958-985 1-28 (163)
412 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.069 1.5E-06 60.4 11.3 34 955-988 36-72 (259)
413 PRK14530 adenylate kinase; Pro 95.7 0.0085 1.8E-07 65.4 3.8 30 957-986 5-34 (215)
414 smart00487 DEXDc DEAD-like hel 95.7 0.054 1.2E-06 55.9 9.5 24 956-979 25-49 (201)
415 TIGR02928 orc1/cdc6 family rep 95.7 0.15 3.2E-06 59.9 14.3 51 454-519 15-65 (365)
416 TIGR00390 hslU ATP-dependent p 95.7 0.01 2.3E-07 70.9 4.6 69 460-531 16-84 (441)
417 COG4619 ABC-type uncharacteriz 95.6 0.03 6.5E-07 59.2 7.2 27 953-979 27-53 (223)
418 PF05272 VirE: Virulence-assoc 95.6 0.018 3.9E-07 62.7 5.8 111 956-1088 53-168 (198)
419 COG2804 PulE Type II secretory 95.6 0.025 5.5E-07 68.5 7.6 94 915-1024 233-337 (500)
420 cd03281 ABC_MSH5_euk MutS5 hom 95.6 0.059 1.3E-06 59.2 9.8 22 956-977 30-51 (213)
421 PTZ00088 adenylate kinase 1; P 95.6 0.0097 2.1E-07 66.2 3.7 32 956-987 7-38 (229)
422 COG0703 AroK Shikimate kinase 95.6 0.0088 1.9E-07 63.5 3.2 32 956-987 3-34 (172)
423 PRK13900 type IV secretion sys 95.6 0.033 7.2E-07 65.3 8.1 69 956-1024 161-245 (332)
424 KOG2383 Predicted ATPase [Gene 95.6 0.026 5.7E-07 66.3 7.1 159 952-1135 111-295 (467)
425 COG4088 Predicted nucleotide k 95.6 0.05 1.1E-06 59.2 8.7 23 957-979 3-25 (261)
426 PF10236 DAP3: Mitochondrial r 95.6 0.44 9.6E-06 55.4 17.3 127 1003-1130 142-307 (309)
427 TIGR02538 type_IV_pilB type IV 95.5 0.036 7.8E-07 69.4 8.9 94 916-1024 292-395 (564)
428 PF00448 SRP54: SRP54-type pro 95.5 0.051 1.1E-06 59.1 9.0 107 956-1074 2-131 (196)
429 COG0563 Adk Adenylate kinase a 95.5 0.011 2.3E-07 63.3 3.7 28 957-984 2-29 (178)
430 PRK03731 aroL shikimate kinase 95.5 0.012 2.6E-07 61.6 3.9 32 956-987 3-34 (171)
431 cd02027 APSK Adenosine 5'-phos 95.4 0.034 7.5E-07 57.5 6.8 66 958-1023 2-79 (149)
432 PF13479 AAA_24: AAA domain 95.4 0.048 1E-06 59.8 8.3 68 956-1027 4-81 (213)
433 TIGR01360 aden_kin_iso1 adenyl 95.4 0.013 2.9E-07 61.7 3.8 30 957-986 5-34 (188)
434 cd00227 CPT Chloramphenicol (C 95.4 0.011 2.4E-07 62.5 3.1 33 956-988 3-35 (175)
435 PF09848 DUF2075: Uncharacteri 95.4 0.033 7.2E-07 65.6 7.4 23 957-979 3-25 (352)
436 PRK14528 adenylate kinase; Pro 95.4 0.013 2.9E-07 62.8 3.7 31 956-986 2-32 (186)
437 PRK14962 DNA polymerase III su 95.4 0.23 4.9E-06 61.0 14.7 51 452-520 12-62 (472)
438 PRK08154 anaerobic benzoate ca 95.4 0.022 4.8E-07 66.0 5.8 36 952-987 130-165 (309)
439 PRK04328 hypothetical protein; 95.3 0.11 2.5E-06 58.3 11.2 34 954-987 22-58 (249)
440 PRK13946 shikimate kinase; Pro 95.3 0.012 2.7E-07 62.7 3.4 32 956-987 11-42 (184)
441 cd03243 ABC_MutS_homologs The 95.3 0.079 1.7E-06 57.4 9.6 21 956-976 30-50 (202)
442 TIGR03880 KaiC_arch_3 KaiC dom 95.3 0.13 2.7E-06 56.5 11.2 34 955-988 16-52 (224)
443 PRK06547 hypothetical protein; 95.3 0.014 3E-07 62.1 3.6 33 955-987 15-47 (172)
444 KOG3928 Mitochondrial ribosome 95.3 0.29 6.2E-06 58.2 14.4 115 1015-1134 316-458 (461)
445 COG1066 Sms Predicted ATP-depe 95.3 0.087 1.9E-06 62.5 10.2 96 954-1049 92-205 (456)
446 PRK14088 dnaA chromosomal repl 95.3 0.096 2.1E-06 63.7 11.1 69 446-529 97-170 (440)
447 PRK05057 aroK shikimate kinase 95.3 0.015 3.3E-07 61.6 3.7 33 956-988 5-37 (172)
448 cd01130 VirB11-like_ATPase Typ 95.2 0.035 7.6E-07 59.4 6.5 69 956-1024 26-110 (186)
449 PRK02496 adk adenylate kinase; 95.2 0.014 3E-07 62.0 3.3 30 957-986 3-32 (184)
450 PRK13342 recombination factor 95.2 0.24 5.1E-06 59.8 14.2 32 493-526 37-68 (413)
451 TIGR01351 adk adenylate kinase 95.2 0.014 3.1E-07 63.5 3.5 29 958-986 2-30 (210)
452 PLN02200 adenylate kinase fami 95.2 0.017 3.6E-07 64.4 3.9 36 955-992 43-78 (234)
453 PF13481 AAA_25: AAA domain; P 95.2 0.064 1.4E-06 57.0 8.1 73 957-1029 34-156 (193)
454 TIGR03574 selen_PSTK L-seryl-t 95.1 0.039 8.4E-07 61.7 6.6 34 958-991 2-38 (249)
455 cd03216 ABC_Carb_Monos_I This 95.1 0.067 1.5E-06 56.0 8.0 72 954-1025 25-111 (163)
456 cd03280 ABC_MutS2 MutS2 homolo 95.1 0.11 2.4E-06 56.2 9.9 20 957-976 30-49 (200)
457 TIGR01448 recD_rel helicase, p 95.1 0.06 1.3E-06 69.3 9.0 97 957-1070 340-455 (720)
458 PRK00279 adk adenylate kinase; 95.1 0.018 3.8E-07 63.0 3.7 30 957-986 2-31 (215)
459 KOG0245 Kinesin-like protein [ 95.0 0.053 1.1E-06 69.4 7.9 80 151-237 476-558 (1221)
460 COG1102 Cmk Cytidylate kinase 95.0 0.018 4E-07 60.4 3.3 28 958-985 3-30 (179)
461 PRK11889 flhF flagellar biosyn 95.0 0.14 3E-06 61.2 10.9 72 955-1026 241-332 (436)
462 TIGR00064 ftsY signal recognit 95.0 0.44 9.6E-06 54.4 14.7 35 954-988 71-108 (272)
463 PF13238 AAA_18: AAA domain; P 95.0 0.016 3.5E-07 56.7 2.7 22 958-979 1-22 (129)
464 smart00534 MUTSac ATPase domai 95.0 0.16 3.4E-06 54.4 10.4 19 958-976 2-20 (185)
465 PRK13833 conjugal transfer pro 95.0 0.042 9E-07 64.2 6.4 69 956-1024 145-225 (323)
466 TIGR02655 circ_KaiC circadian 94.9 0.12 2.7E-06 63.5 10.8 74 954-1027 262-366 (484)
467 COG2805 PilT Tfp pilus assembl 94.9 0.058 1.3E-06 61.7 7.1 70 956-1025 125-209 (353)
468 COG2909 MalT ATP-dependent tra 94.9 0.21 4.6E-06 63.7 12.6 153 956-1127 38-229 (894)
469 PRK13894 conjugal transfer ATP 94.9 0.044 9.6E-07 63.9 6.3 69 956-1024 149-229 (319)
470 PRK05201 hslU ATP-dependent pr 94.9 0.038 8.3E-07 66.2 5.9 66 462-531 21-87 (443)
471 cd03115 SRP The signal recogni 94.9 0.092 2E-06 55.1 8.2 32 958-989 3-37 (173)
472 PRK06645 DNA polymerase III su 94.8 0.51 1.1E-05 58.5 15.6 53 452-522 19-71 (507)
473 PRK10416 signal recognition pa 94.8 0.43 9.3E-06 55.8 14.1 34 955-988 114-150 (318)
474 TIGR02788 VirB11 P-type DNA tr 94.8 0.037 8.1E-07 64.1 5.5 69 956-1024 145-228 (308)
475 TIGR00767 rho transcription te 94.8 0.074 1.6E-06 63.5 7.9 25 956-980 169-193 (415)
476 PRK13407 bchI magnesium chelat 94.8 0.5 1.1E-05 55.6 14.7 87 766-853 187-289 (334)
477 PRK04040 adenylate kinase; Pro 94.7 0.025 5.4E-07 61.0 3.6 29 956-984 3-33 (188)
478 PF01583 APS_kinase: Adenylyls 94.7 0.055 1.2E-06 56.9 6.0 66 956-1021 3-80 (156)
479 PF06414 Zeta_toxin: Zeta toxi 94.7 0.066 1.4E-06 57.9 6.9 40 955-994 15-55 (199)
480 PRK04182 cytidylate kinase; Pr 94.7 0.026 5.6E-07 59.0 3.6 29 957-985 2-30 (180)
481 PRK09519 recA DNA recombinatio 94.7 0.14 3E-06 66.0 10.6 73 956-1028 61-152 (790)
482 TIGR03420 DnaA_homol_Hda DnaA 94.7 0.3 6.5E-06 53.2 12.0 54 449-519 10-63 (226)
483 TIGR03881 KaiC_arch_4 KaiC dom 94.7 0.19 4.2E-06 55.2 10.5 35 954-988 19-56 (229)
484 PRK14527 adenylate kinase; Pro 94.7 0.023 4.9E-07 60.9 3.2 31 956-986 7-37 (191)
485 PRK13851 type IV secretion sys 94.7 0.036 7.9E-07 65.2 5.1 69 956-1024 163-246 (344)
486 PF00406 ADK: Adenylate kinase 94.7 0.026 5.7E-07 58.0 3.5 32 960-993 1-32 (151)
487 TIGR00382 clpX endopeptidase C 94.6 0.048 1E-06 65.6 6.0 84 444-530 66-152 (413)
488 PRK12724 flagellar biosynthesi 94.6 0.29 6.2E-06 59.1 12.4 33 956-988 224-260 (432)
489 COG1936 Predicted nucleotide k 94.6 0.021 4.5E-07 60.6 2.5 30 957-987 2-31 (180)
490 PLN02674 adenylate kinase 94.6 0.029 6.3E-07 63.0 3.9 32 955-986 31-62 (244)
491 PRK04301 radA DNA repair and r 94.6 0.13 2.8E-06 59.8 9.3 35 956-990 103-146 (317)
492 PRK11331 5-methylcytosine-spec 94.6 0.15 3.2E-06 61.9 9.9 26 492-519 194-219 (459)
493 PF08433 KTI12: Chromatin asso 94.6 0.087 1.9E-06 60.1 7.6 69 958-1026 4-82 (270)
494 PRK06696 uridine kinase; Valid 94.6 0.065 1.4E-06 59.0 6.5 37 956-992 23-62 (223)
495 TIGR02236 recomb_radA DNA repa 94.6 0.15 3.2E-06 59.0 9.7 35 956-990 96-139 (310)
496 cd01125 repA Hexameric Replica 94.6 0.21 4.4E-06 55.6 10.4 21 958-978 4-24 (239)
497 TIGR02173 cyt_kin_arch cytidyl 94.6 0.03 6.4E-07 58.1 3.6 29 958-986 3-31 (171)
498 PRK01184 hypothetical protein; 94.5 0.029 6.3E-07 59.5 3.5 29 957-986 3-31 (184)
499 cd00267 ABC_ATPase ABC (ATP-bi 94.5 0.12 2.6E-06 53.4 8.0 71 954-1025 24-109 (157)
500 PF13521 AAA_28: AAA domain; P 94.5 0.031 6.8E-07 58.1 3.6 26 958-984 2-27 (163)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-65 Score=590.57 Aligned_cols=545 Identities=31% Similarity=0.456 Sum_probs=424.8
Q ss_pred CCCccccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEE
Q 000925 445 GPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (1222)
Q Consensus 445 ~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~ 524 (1222)
.....+|+|..|... +.|-.-|..-.. |++|+++..|+- +- ..+.+||-|||| ..++|||.|+|.+.|+++|-
T Consensus 181 ~~~~snv~f~diGG~--d~~~~el~~li~-~i~~Pe~~~~lG-v~-PprGvLlHGPPG--CGKT~lA~AiAgel~vPf~~ 253 (802)
T KOG0733|consen 181 EFPESNVSFSDIGGL--DKTLAELCELII-HIKHPEVFSSLG-VR-PPRGVLLHGPPG--CGKTSLANAIAGELGVPFLS 253 (802)
T ss_pred CCCCCCcchhhccCh--HHHHHHHHHHHH-HhcCchhHhhcC-CC-CCCceeeeCCCC--ccHHHHHHHHhhhcCCceEe
Confidence 355678999999998 777666666554 799999976653 32 357899999999 99999999999999999998
Q ss_pred EecCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccceee
Q 000925 525 VDSLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVI 604 (1222)
Q Consensus 525 ~D~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~v~ 604 (1222)
+-...+-+ ++-|.+
T Consensus 254 isApeivS--------------------------------------------GvSGES---------------------- 267 (802)
T KOG0733|consen 254 ISAPEIVS--------------------------------------------GVSGES---------------------- 267 (802)
T ss_pred ecchhhhc--------------------------------------------ccCccc----------------------
Confidence 76655421 122210
Q ss_pred eccccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcch
Q 000925 605 LPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDI 684 (1222)
Q Consensus 605 ~~~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~di 684 (1222)
.-.|++||+-+.+ ..|+|||||||
T Consensus 268 -----------------------------------------------------EkkiRelF~~A~~---~aPcivFiDeI 291 (802)
T KOG0733|consen 268 -----------------------------------------------------EKKIRELFDQAKS---NAPCIVFIDEI 291 (802)
T ss_pred -----------------------------------------------------HHHHHHHHHHHhc---cCCeEEEeecc
Confidence 1168899999988 99999999999
Q ss_pred hhhhcc-----C----hhhHHHHHHHHhcCC------CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCC
Q 000925 685 EKSLTG-----N----NDAYGALKSKLENLP------SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPD 749 (1222)
Q Consensus 685 e~~l~~-----~----~~~~~~l~~~L~~l~------g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd 749 (1222)
|. +.. + .++.+.|-.-++.|. .+|||||++||+|+ |||
T Consensus 292 DA-I~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs----------------------lDp---- 344 (802)
T KOG0733|consen 292 DA-ITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS----------------------LDP---- 344 (802)
T ss_pred cc-cccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc----------------------cCH----
Confidence 99 552 2 344455555555552 38999999997666 454
Q ss_pred CccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHH-hhhCCCCcccchh
Q 000925 750 NFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLES 826 (1222)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~-l~~~~l~~~dLe~ 826 (1222)
|||| ||++++.+..|+..+|..||+|.-+ |+-.+ +.++..
T Consensus 345 -----------------------------------aLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g--~~d~~q 387 (802)
T KOG0733|consen 345 -----------------------------------ALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG--DFDFKQ 387 (802)
T ss_pred -----------------------------------HHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC--CcCHHH
Confidence 9999 9999999999999999999999866 55554 788999
Q ss_pred hhccccCCCHHHHHHHHhhhhhhhhccccCCCCC-CCccccccC-----------chhhhHH-----HH----H-hhhhh
Q 000925 827 LCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTE-----------SIMYGLN-----IL----Q-GIQSE 884 (1222)
Q Consensus 827 La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~-~~kl~id~~-----------sI~~~~~-----df----~-~a~~e 884 (1222)
||.+|.||-||||.+||.+|+..|+.|..++... ..+..++.. +|+.... ++ + ..++.
T Consensus 388 lA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~ 467 (802)
T KOG0733|consen 388 LAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNN 467 (802)
T ss_pred HHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhC
Confidence 9999999999999999999999999997664321 111111111 1210000 00 0 00111
Q ss_pred hhhhhhhhcc--ccChhHHHHHHhcCCCCC-------CCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCC
Q 000925 885 SKSLKKSLKD--VVTENEFEKKLLADVIPP-------SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPC 955 (1222)
Q Consensus 885 ik~~~~slk~--lv~~~e~~~~ll~~vIp~-------~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp 955 (1222)
..+....... .+..++|+..+. .+-|. .-++++|+|||++++++.+|..++.+|+++|++|...|+.. |
T Consensus 468 ~d~~S~E~~~~L~i~~eDF~~Al~-~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~-P 545 (802)
T KOG0733|consen 468 PDPLSKELLEGLSIKFEDFEEALS-KIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA-P 545 (802)
T ss_pred CCCcChHHhccceecHHHHHHHHH-hcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC-C
Confidence 1111100000 122344554431 11121 12478999999999999999999999999999999999765 5
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1035 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1035 (1222)
.|||||||||||||.||+|+|++.|++|+.|.+++|+++|+|++|..++++|..|+..+|||||+||||.|+++|+..+
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~- 624 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG- 624 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred HHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHh--hcccCCc
Q 000925 1036 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILA--KEELASD 1111 (1222)
Q Consensus 1036 ~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~--k~~l~sd 1111 (1222)
.....+++++|+++|||+.. +..|.|||+||+|+.+|++++| ||++.+++++|+.++|.+||+.+.+ +..+.++
T Consensus 625 s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~d 702 (802)
T KOG0733|consen 625 SSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSD 702 (802)
T ss_pred chhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcc
Confidence 66778999999999999864 4789999999999999999999 9999999999999999999999999 6778899
Q ss_pred ccHHHHHHHcC--CCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccc
Q 000925 1112 VDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1189 (1222)
Q Consensus 1112 idl~~LA~~t~--GySg~DL~~L~~~Aa~~airrii~~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS 1189 (1222)
+|++.||..+. ||+|+||..||++|...++++.+....... ...........+++.||++|+++++||
T Consensus 703 Vdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~----------~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 703 VDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSE----------DDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred cCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccC----------cccceeeeeeeecHHHHHHHHHhcCCC
Confidence 99999998887 999999999999999999998765322100 000000013358999999999999999
Q ss_pred ccccccch
Q 000925 1190 VSSESTNM 1197 (1222)
Q Consensus 1190 ~s~e~~~~ 1197 (1222)
+++....+
T Consensus 773 v~~~dr~~ 780 (802)
T KOG0733|consen 773 VSERDRKK 780 (802)
T ss_pred ccHHHHHH
Confidence 98774433
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-62 Score=571.89 Aligned_cols=475 Identities=31% Similarity=0.487 Sum_probs=403.4
Q ss_pred HHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEecCCCCCCCCCCCcccccc
Q 000925 465 KNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPGHRKPTSSVEADI 544 (1222)
Q Consensus 465 k~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~~~~~~~~~~~s~~~~~~ 544 (1222)
-.++.+..+..|.++...+- -=-...+.+||+||+| ...++|++|.|++.+|.|+.+....+-
T Consensus 193 ~~~i~e~v~~pl~~~~~~~s--~g~~~prg~Ll~gppg--~Gkt~l~~aVa~e~~a~~~~i~~peli------------- 255 (693)
T KOG0730|consen 193 LSVIRELVELPLRHPALFKS--IGIKPPRGLLLYGPPG--TGKTFLVRAVANEYGAFLFLINGPELI------------- 255 (693)
T ss_pred HHHHHHHHHhhhcchhhhhh--cCCCCCCCccccCCCC--CChHHHHHHHHHHhCceeEecccHHHH-------------
Confidence 34566677778888877432 2245678999999999 999999999999999999988876551
Q ss_pred cCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccceeeeccccCCCCCceeeecCCCC
Q 000925 545 TGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIP 624 (1222)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~v~~~~e~n~~~kv~v~fd~~~~ 624 (1222)
.+|.|...+
T Consensus 256 -------------------------------~k~~gEte~---------------------------------------- 264 (693)
T KOG0730|consen 256 -------------------------------SKFPGETES---------------------------------------- 264 (693)
T ss_pred -------------------------------HhcccchHH----------------------------------------
Confidence 244442111
Q ss_pred CCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCC-CeEEEEcchhhhhcc--------ChhhH
Q 000925 625 EGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSS-PLIVFVKDIEKSLTG--------NNDAY 695 (1222)
Q Consensus 625 ~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~-P~Ilfi~die~~l~~--------~~~~~ 695 (1222)
.+...|+...+ .+ |+||||+|+|. ++. ..+..
T Consensus 265 -----------------------------------~LR~~f~~a~k---~~~psii~IdEld~-l~p~r~~~~~~e~Rv~ 305 (693)
T KOG0730|consen 265 -----------------------------------NLRKAFAEALK---FQVPSIIFIDELDA-LCPKREGADDVESRVV 305 (693)
T ss_pred -----------------------------------HHHHHHHHHhc---cCCCeeEeHHhHhh-hCCcccccchHHHHHH
Confidence 34455555544 66 99999999999 663 35666
Q ss_pred HHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCC
Q 000925 696 GALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFP 773 (1222)
Q Consensus 696 ~~l~~~L~~l~--g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~ 773 (1222)
..+...++.+. +.||||++++++++ ||+
T Consensus 306 sqlltL~dg~~~~~~vivl~atnrp~s----------------------ld~---------------------------- 335 (693)
T KOG0730|consen 306 SQLLTLLDGLKPDAKVIVLAATNRPDS----------------------LDP---------------------------- 335 (693)
T ss_pred HHHHHHHhhCcCcCcEEEEEecCCccc----------------------cCh----------------------------
Confidence 67777777776 79999999996555 443
Q ss_pred CeEEecCCchhHHHH-HHHHHHhhcchhhhccchhhHHHHHhhhCCCCcccchhhhccccCCCHHHHHHHHhhhhhhhhc
Q 000925 774 NKVTIQLPQDEALLS-DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 852 (1222)
Q Consensus 774 ~~i~i~~P~DeALlR-Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~ 852 (1222)
+++| ||++++++..|+..+|.+|+++|+..-+.. ++++|+.+|..|.||.|+|+..+|++|...+++
T Consensus 336 -----------alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r 403 (693)
T KOG0730|consen 336 -----------ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATR 403 (693)
T ss_pred -----------hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhh
Confidence 8888 999999999999999999999998833333 789999999999999999999999999998887
Q ss_pred cccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhccccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHH
Q 000925 853 HCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTL 932 (1222)
Q Consensus 853 r~~~~i~~~~kl~id~~sI~~~~~df~~a~~eik~~~~slk~lv~~~e~~~~ll~~vIp~~e~~vtfddI~Gle~ik~~L 932 (1222)
+ ...+|+.++..+.+.- .. ..+ .+-++++|+||||++++|.+|
T Consensus 404 ~--------------------~~~~~~~A~~~i~psa----------~R------e~~-ve~p~v~W~dIGGlE~lK~el 446 (693)
T KOG0730|consen 404 R--------------------TLEIFQEALMGIRPSA----------LR------EIL-VEMPNVSWDDIGGLEELKREL 446 (693)
T ss_pred h--------------------hHHHHHHHHhcCCchh----------hh------hee-ccCCCCChhhccCHHHHHHHH
Confidence 5 3455655554443311 00 011 223478999999999999999
Q ss_pred HHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHh
Q 000925 933 KELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 1012 (1222)
Q Consensus 933 ~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k 1012 (1222)
++.|.+|+.+|+.|.+.++ .||+|||||||||||||++|+++|++.+++|+.+.+++|+++|+|++|+.++++|..|+.
T Consensus 447 q~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 447 QQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQ 525 (693)
T ss_pred HHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhh
Confidence 9999999999999999984 566999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh--cccccccCCCC
Q 000925 1013 IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLP 1090 (1222)
Q Consensus 1013 ~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~I~lP 1090 (1222)
.+|+|||+||||.+.+.|+.... .+..+++++|+++|||+... .+|+|||+||+|+.||++++| ||++.|+|++|
T Consensus 526 ~aP~IiFfDEiDsi~~~R~g~~~-~v~~RVlsqLLtEmDG~e~~--k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplP 602 (693)
T KOG0730|consen 526 VAPCIIFFDEIDALAGSRGGSSS-GVTDRVLSQLLTEMDGLEAL--KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLP 602 (693)
T ss_pred cCCeEEehhhHHhHhhccCCCcc-chHHHHHHHHHHHccccccc--CcEEEEeccCChhhcCHHHcCCcccceeEeecCc
Confidence 99999999999999999874333 78899999999999999754 789999999999999999999 99999999999
Q ss_pred CHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 000925 1091 DAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVD 1170 (1222)
Q Consensus 1091 d~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~e~~~~~~~~~~~~~~~~~~~ 1170 (1222)
+.+.|.+||+.+++++.+.+++|+..||+.|+||||+||.++|++|+..++++.++
T Consensus 603 D~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~------------------------ 658 (693)
T KOG0730|consen 603 DLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE------------------------ 658 (693)
T ss_pred cHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc------------------------
Confidence 99999999999999999999999999999999999999999999999999998653
Q ss_pred cccccHHHHHHHHHHhccccccc
Q 000925 1171 VRPLKMDDFKYAHEQVCASVSSE 1193 (1222)
Q Consensus 1171 ~r~Lt~eDF~~Alekv~pS~s~e 1193 (1222)
...++.+||.+|++.++++.+..
T Consensus 659 a~~i~~~hf~~al~~~r~s~~~~ 681 (693)
T KOG0730|consen 659 ATEITWQHFEEALKAVRPSLTSE 681 (693)
T ss_pred cccccHHHHHHHHHhhcccCCHH
Confidence 24589999999999999998765
No 3
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-54 Score=481.73 Aligned_cols=378 Identities=60% Similarity=0.929 Sum_probs=338.7
Q ss_pred ccccCCCHHHHHHHHhhhhhhhhccccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhcc-ccChhHHHHHHhc
Q 000925 829 IKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKD-VVTENEFEKKLLA 907 (1222)
Q Consensus 829 ~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~~eik~~~~slk~-lv~~~e~~~~ll~ 907 (1222)
..+..+...-++.++.+|.+|++.++....... ..++..+++.++..+|+....+ .+++. ++..++++..+..
T Consensus 6 ~~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i~s 79 (386)
T KOG0737|consen 6 TKDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRIAS 79 (386)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHhhh
Confidence 344455667788999999999998765443333 6677888888887777665433 34443 7889999999999
Q ss_pred CCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 908 DVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 908 ~vIp~~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
.++++.++.++|+||+|++.++++|++.|.+|+++|++|..+++.+||+||||+||||||||+||+|+|++.|++|+.+.
T Consensus 80 ~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737|consen 80 DVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred cccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEec
Q 000925 988 MSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1067 (1222)
Q Consensus 988 ~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTT 1067 (1222)
++.++++|||++++.++.+|..|.+.+|+||||||||.+++.| ...++++...+.++||..|||+.++.+.+|+|+|||
T Consensus 160 ~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgAT 238 (386)
T KOG0737|consen 160 VSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGAT 238 (386)
T ss_pred ccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCC
Confidence 9999999999999999999999999999999999999999999 678999999999999999999999988899999999
Q ss_pred CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHH
Q 000925 1068 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1147 (1222)
Q Consensus 1068 N~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~ 1147 (1222)
|+|.+||++++||++++++|++|+..+|.+|++.+++.+.+.+++|+..+|.+|+||||+||+++|..|++.++|+++..
T Consensus 239 NRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 239 NRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred CCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred H--HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHhhcCCCcc
Q 000925 1148 E--KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSR 1213 (1222)
Q Consensus 1148 ~--~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~e~~~~~~~v~W~DigGl~~~R 1213 (1222)
+ ..+.....+.....+.....-..|+++++||..|+.++.+++..+...|....+|++.+|++++|
T Consensus 319 ~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 319 ETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGEGGSR 386 (386)
T ss_pred cccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhccccCC
Confidence 6 22232233333433333445568999999999999999999999999999999999999999986
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.2e-52 Score=521.68 Aligned_cols=539 Identities=29% Similarity=0.444 Sum_probs=424.7
Q ss_pred cccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEecC
Q 000925 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1222)
Q Consensus 449 ~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~~ 528 (1222)
-+++|+++-.+ +..+..|.+.....++|+++.+.. .+ ...+.|||+||+| ..+++||||||++.+++++.++..
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~-gi-~~~~giLL~GppG--tGKT~laraia~~~~~~~i~i~~~ 246 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHL-GI-EPPKGVLLYGPPG--TGKTLLAKAVANEAGAYFISINGP 246 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhc-CC-CCCceEEEECCCC--CChHHHHHHHHHHhCCeEEEEecH
Confidence 46899999888 999999999988889998875321 12 3457799999999 899999999999999998888765
Q ss_pred CCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccceeeeccc
Q 000925 529 LLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFE 608 (1222)
Q Consensus 529 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~v~~~~e 608 (1222)
.+.. +|+|.
T Consensus 247 ~i~~--------------------------------------------~~~g~--------------------------- 255 (733)
T TIGR01243 247 EIMS--------------------------------------------KYYGE--------------------------- 255 (733)
T ss_pred HHhc--------------------------------------------ccccH---------------------------
Confidence 5521 12220
Q ss_pred cCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcchhhhh
Q 000925 609 DNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSL 688 (1222)
Q Consensus 609 ~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~die~~l 688 (1222)
..-.+..+|+.+.. ..|.||||||+|.+.
T Consensus 256 ------------------------------------------------~~~~l~~lf~~a~~---~~p~il~iDEid~l~ 284 (733)
T TIGR01243 256 ------------------------------------------------SEERLREIFKEAEE---NAPSIIFIDEIDAIA 284 (733)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHh---cCCcEEEeehhhhhc
Confidence 01145667777665 789999999999965
Q ss_pred ccC--------hhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCcccccccc
Q 000925 689 TGN--------NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 758 (1222)
Q Consensus 689 ~~~--------~~~~~~l~~~L~~l~--g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~~~~~~~ 758 (1222)
... .+..+.|...++.+. +.|+|||++++++. ++
T Consensus 285 ~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~------------------------------ld------ 328 (733)
T TIGR01243 285 PKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDA------------------------------LD------ 328 (733)
T ss_pred ccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhh------------------------------cC------
Confidence 421 233445555666553 58999999984332 22
Q ss_pred ccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHHhhhCCC-CcccchhhhccccCCC
Q 000925 759 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLT 835 (1222)
Q Consensus 759 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~dLe~La~~tkg~s 835 (1222)
++++| ||++++++++|+...|..|+++|+. .-.+ ++.+++.++..+.||+
T Consensus 329 -------------------------~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 329 -------------------------PALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLAEVTHGFV 381 (733)
T ss_pred -------------------------HHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHHHhCCCCC
Confidence 27777 9999999999999999999999864 2233 5778999999999999
Q ss_pred HHHHHHHHhhhhhhhhccccCCCCCC-Cccccc---cCchhhhHHHHHhhhhhhhhhhhhhccccChhHHHHHHhcCCCC
Q 000925 836 TEGVEKIVGWALSHHFMHCSEAPGKD-AKLKIS---TESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIP 911 (1222)
Q Consensus 836 gadI~~Lv~~A~s~Al~r~~~~i~~~-~kl~id---~~sI~~~~~df~~a~~eik~~~~slk~lv~~~e~~~~ll~~vIp 911 (1222)
+++|..+|..|+..++.+.......+ ....+. .+...+...+|..++..+++... .+ .+
T Consensus 382 gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~--~~--------------~~- 444 (733)
T TIGR01243 382 GADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAI--RE--------------VL- 444 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhcccccc--ch--------------hh-
Confidence 99999999999999988764311000 000011 12344556677766655543210 00 00
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000925 912 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 991 (1222)
Q Consensus 912 ~~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L 991 (1222)
...+.++|++|+|++.+++.|.+.+.+|+.+++.|.+.++ ++++|+|||||||||||+||+++|++++++|+.++++++
T Consensus 445 ~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~-~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l 523 (733)
T TIGR01243 445 VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI-RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEI 523 (733)
T ss_pred ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 1123578999999999999999999999999999998884 456899999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC
Q 000925 992 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 992 ~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
.++|+|++++.++.+|..|+..+|+||||||||.|++.++.........+++++|+..++++.. ..+++||+|||+++
T Consensus 524 ~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~~ 601 (733)
T TIGR01243 524 LSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE--LSNVVVIAATNRPD 601 (733)
T ss_pred hhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC--CCCEEEEEeCCChh
Confidence 9999999999999999999999999999999999998876554555677899999999999754 36799999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000925 1072 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1149 (1222)
Q Consensus 1072 ~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~ 1149 (1222)
.||++++| ||++.+++++|+.++|.+||+.++.+..+..++++..||..|+||+|+||.++|++|+..++++.+....
T Consensus 602 ~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~ 681 (733)
T TIGR01243 602 ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPA 681 (733)
T ss_pred hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999998 9999999999999999999999999888888999999999999999999999999999999998764322
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHhhc
Q 000925 1150 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1208 (1222)
Q Consensus 1150 ~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~e~~~~~~~v~W~DigG 1208 (1222)
.+.... . .........|+++||..|+++++||++.+ .+..+.+|...+|
T Consensus 682 ~~~~~~---~-----~~~~~~~~~i~~~~f~~al~~~~ps~~~~--~~~~~~~~~~~~~ 730 (733)
T TIGR01243 682 KEKLEV---G-----EEEFLKDLKVEMRHFLEALKKVKPSVSKE--DMLRYERLAKELK 730 (733)
T ss_pred chhhhc---c-----cccccccCcccHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhc
Confidence 111000 0 00011234799999999999999999877 4567888988776
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-49 Score=471.24 Aligned_cols=442 Identities=27% Similarity=0.453 Sum_probs=337.8
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcchhhhhcc-----ChhhHHHHHHHHh----cCC-CCEEEEEeccCCCCccccCCCCC
Q 000925 660 AINELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLE----NLP-SNVVVIGSHTQLDSRKEKSHPGG 729 (1222)
Q Consensus 660 ~~~~l~ev~~~esk~~P~Ilfi~die~~l~~-----~~~~~~~l~~~L~----~l~-g~vvvIgS~~~~d~~k~k~~~~~ 729 (1222)
-+++.|..+.. .+|+||||++.|-+... .-++...|+-.|. +.+ ++++|||+.+..++
T Consensus 478 kl~~~f~~a~~---~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~--------- 545 (953)
T KOG0736|consen 478 KLQAIFSRARR---CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIED--------- 545 (953)
T ss_pred HHHHHHHHHhh---cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccccc---------
Confidence 45666666666 79999999999984331 1334444544444 323 48999999986444
Q ss_pred ceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhcchhhhccchhhH
Q 000925 730 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIIS 809 (1222)
Q Consensus 730 ~~l~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~ 809 (1222)
.|- .+-.+|.. ++.++.++..-|.+||+
T Consensus 546 -----------------lp~-----------------~i~~~f~~------------------ei~~~~lse~qRl~iLq 573 (953)
T KOG0736|consen 546 -----------------LPA-----------------DIQSLFLH------------------EIEVPALSEEQRLEILQ 573 (953)
T ss_pred -----------------CCH-----------------HHHHhhhh------------------hccCCCCCHHHHHHHHH
Confidence 221 12233444 45555555555555555
Q ss_pred HHHHhhhCCC-CcccchhhhccccCCCHHHHHHHHhhhhhhhhccccCCCC----C-CCccccccCchhhhHHHHHhhhh
Q 000925 810 IRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPG----K-DAKLKISTESIMYGLNILQGIQS 883 (1222)
Q Consensus 810 IhT~l~~~~l-~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~----~-~~kl~id~~sI~~~~~df~~a~~ 883 (1222)
+- +....+ .++++..++.+|.||+-.+++.++..+...+..+-....+ . ...-.+-+....+...||..+..
T Consensus 574 ~y--~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals 651 (953)
T KOG0736|consen 574 WY--LNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALS 651 (953)
T ss_pred HH--HhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHH
Confidence 53 223334 5778899999999999999999998775544443211110 0 01111222334445555554443
Q ss_pred hhhhhhhhhccccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECC
Q 000925 884 ESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGP 963 (1222)
Q Consensus 884 eik~~~~slk~lv~~~e~~~~ll~~vIp~~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GP 963 (1222)
..+ .++...+.+ |.-++++|+||||++++|++|.+.+.+|+.+|++|..+ .++..|||||||
T Consensus 652 ~~~------------~~fs~aiGA----PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGP 713 (953)
T KOG0736|consen 652 RLQ------------KEFSDAIGA----PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGP 713 (953)
T ss_pred HHH------------HhhhhhcCC----CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECC
Confidence 332 223333333 33447999999999999999999999999999999876 445579999999
Q ss_pred CCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchH-HHHHHH
Q 000925 964 PGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKM 1042 (1222)
Q Consensus 964 pGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~-e~l~~i 1042 (1222)
||||||.+|+|+|.++..+|+.+.+++|.++|+|++|++++++|+.|+..+|||||+||+|+|.++|+..++. ..+.++
T Consensus 714 PGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRV 793 (953)
T KOG0736|consen 714 PGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRV 793 (953)
T ss_pred CCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876654 488999
Q ss_pred HHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh--cccccccCCCCC-HHHHHHHHHHHHhhcccCCcccHHHHHH
Q 000925 1043 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD-APNREKIIRVILAKEELASDVDLEGIAN 1119 (1222)
Q Consensus 1043 l~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~I~lPd-~eeR~eILk~lL~k~~l~sdidl~~LA~ 1119 (1222)
..+|+.++||+.......|+||||||+|+.||++++| ||++-+++.+++ .+.+..+|+.+.++..++.++++.++|+
T Consensus 794 VSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk 873 (953)
T KOG0736|consen 794 VSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAK 873 (953)
T ss_pred HHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHh
Confidence 9999999999987667899999999999999999999 999999999986 5668899999999999999999999999
Q ss_pred HcC-CCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccc
Q 000925 1120 MAD-GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 1194 (1222)
Q Consensus 1120 ~t~-GySg~DL~~L~~~Aa~~airrii~~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~e~ 1194 (1222)
.+. .|+|+|+..||..|+..|++|.+...+.-. .+......+...|+|+||.+|+++++||++..-
T Consensus 874 ~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~---------~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~E 940 (953)
T KOG0736|consen 874 KCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGT---------ISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQE 940 (953)
T ss_pred hCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhcc---------ccccccCCceEEEEHHHHHHHHHhcCCcccHHH
Confidence 997 899999999999999999999876544211 011112334457999999999999999998753
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-44 Score=433.40 Aligned_cols=410 Identities=35% Similarity=0.526 Sum_probs=336.5
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcchhhhhccCh--------hhHHHHHHHHhcCC-CCEEEEEeccCCCCccccCCCCCc
Q 000925 660 AINELFEVALNESKSSPLIVFVKDIEKSLTGNN--------DAYGALKSKLENLP-SNVVVIGSHTQLDSRKEKSHPGGL 730 (1222)
Q Consensus 660 ~~~~l~ev~~~esk~~P~Ilfi~die~~l~~~~--------~~~~~l~~~L~~l~-g~vvvIgS~~~~d~~k~k~~~~~~ 730 (1222)
.+..+|+-+.. ..|.|+|+++++.+..... .....+...++.+. +.|++++.+++.+
T Consensus 64 ~~~~~~~~a~~---~~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~----------- 129 (494)
T COG0464 64 RLRELFEEAEK---LAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPD----------- 129 (494)
T ss_pred HHHHHHHHHHH---hCCCeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCcc-----------
Confidence 55566666665 7779999999999766322 23444444444443 4588888666332
Q ss_pred eeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhh
Q 000925 731 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNII 808 (1222)
Q Consensus 731 ~l~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il 808 (1222)
.++ +++++ ||++++++.+|+..+|.+|+
T Consensus 130 -------------------~~~-------------------------------~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 130 -------------------GLD-------------------------------PAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred -------------------ccC-------------------------------hhHhCccccceeeecCCCCHHHHHHHH
Confidence 233 27777 99999999999999999999
Q ss_pred HHHHHhhhCCCCcccchhhhccccCCCHHHHHHHHhhhhhhhhccccCCCCCCCccccccCchhhhHHHHHhhhhhhhhh
Q 000925 809 SIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSL 888 (1222)
Q Consensus 809 ~IhT~l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~~eik~~ 888 (1222)
.+|+.++..+. ..+++.++..+.||.++++..+|+.+..+++++.. ......+.+...+|..+...+.+.
T Consensus 160 ~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~---------~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 160 QIHTRLMFLGP-PGTGKTLAARTVGKSGADLGALAKEAALRELRRAI---------DLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHhcCCCcc-cccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh---------ccCcccccccHHHHHHHHHhcCcc
Confidence 99998443332 78899999999999999999999999999988754 122344445555555444333221
Q ss_pred hhhhccccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChH
Q 000925 889 KKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGK 968 (1222)
Q Consensus 889 ~~slk~lv~~~e~~~~ll~~vIp~~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGK 968 (1222)
..+....+.++|++++|++.+++.+.+.+.+|+.+++.|.+.+ .+++.|+||||||||||
T Consensus 230 -------------------~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGK 289 (494)
T COG0464 230 -------------------RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGK 289 (494)
T ss_pred -------------------cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCH
Confidence 0112233468999999999999999999999999999998755 45668999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhh
Q 000925 969 TMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1048 (1222)
Q Consensus 969 T~LArAIA~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~ 1048 (1222)
|+||+++|++++.+|+.+..++++++|+|+++++++.+|..|++.+|+||||||||.|+..+.... .....+++++++.
T Consensus 290 T~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-~~~~~r~~~~lL~ 368 (494)
T COG0464 290 TLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE-DGSGRRVVGQLLT 368 (494)
T ss_pred HHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-chHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998886533 2233689999999
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcc--cCCcccHHHHHHHcCCC
Q 000925 1049 NWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEE--LASDVDLEGIANMADGY 1124 (1222)
Q Consensus 1049 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~--l~sdidl~~LA~~t~Gy 1124 (1222)
.++++... .+|+||+|||+++.+|++++| ||++.++|++|+..+|.+||+.++.... +..++++..++..++||
T Consensus 369 ~~d~~e~~--~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~ 446 (494)
T COG0464 369 ELDGIEKA--EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGY 446 (494)
T ss_pred HhcCCCcc--CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCC
Confidence 99998654 679999999999999999999 9999999999999999999999999644 35789999999999999
Q ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccc
Q 000925 1125 SGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1191 (1222)
Q Consensus 1125 Sg~DL~~L~~~Aa~~airrii~~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s 1191 (1222)
+++||..+|.+|++.++++.. ...++++||..|++++.|++.
T Consensus 447 sgadi~~i~~ea~~~~~~~~~-------------------------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 447 SGADIAALVREAALEALREAR-------------------------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHhc-------------------------cCCccHHHHHHHHHhcCCCCC
Confidence 999999999999999888742 256999999999999999975
No 7
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-45 Score=407.33 Aligned_cols=284 Identities=42% Similarity=0.710 Sum_probs=256.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000925 913 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 992 (1222)
Q Consensus 913 ~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 992 (1222)
..+++.|+||.|+.++|+-|+|.|.+|+..|+.|. ++.+|.+|||++||||||||+||+|+|.+++..|++|+.+.+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 45579999999999999999999999999999997 5689999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccC--CCcEEEEEecCCC
Q 000925 993 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRP 1070 (1222)
Q Consensus 993 s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~--~~~VlVIaTTN~p 1070 (1222)
++|-|++|+.++-+|++|+.++|++|||||||.|+.+|+...+++..+++..+|+.+|||+.... ...|+|+|+||-|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987543 2349999999999
Q ss_pred CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000925 1071 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1150 (1222)
Q Consensus 1071 ~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~ 1150 (1222)
++||++|+|||.++|+|++|+.+.|..+|+..+....+.++++++.||..++||+|+||.++|++|.+.++||.+.....
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987654322
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHhhcC
Q 000925 1151 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1209 (1222)
Q Consensus 1151 e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~e~~~~~~~v~W~DigGl 1209 (1222)
...... ..++-..+++++||+.|+.+++||++.. .+..+.+|.+-||.
T Consensus 443 ~ei~~l---------akE~~~~pv~~~Dfe~Al~~v~pSvs~~--d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 443 REIRQL---------AKEEPKMPVTNEDFEEALRKVRPSVSAA--DLEKYEKWMDEFGS 490 (491)
T ss_pred HHhhhh---------hhhccccccchhhHHHHHHHcCcCCCHH--HHHHHHHHHHHhcC
Confidence 111111 1112226899999999999999999855 56778899999996
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-44 Score=401.60 Aligned_cols=247 Identities=41% Similarity=0.700 Sum_probs=229.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000925 914 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 914 e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 993 (1222)
.+.++|++|||+++++++|+|.+.+|+.+|++|.+.|+ .||+|||||||||||||+||+|+|++.++.|+.+.+++|..
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI-DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC-CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 45789999999999999999999999999999999995 56799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 994 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
+|+|++.+.++.+|.+|+.++||||||||||.+.++|.+. +......+.+-+|+++|||+.+. ++|-||+|||+++
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~D 301 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRPD 301 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCcc
Confidence 9999999999999999999999999999999999988653 33334556777899999999764 8899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000925 1072 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1149 (1222)
Q Consensus 1072 ~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~ 1149 (1222)
.|||+++| ||++.|+|++|+.+.|.+||+.+.+++.+..++|++.||..++|+||+||+++|.+|.+.|+|+
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~------ 375 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRE------ 375 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHh------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccc
Q 000925 1150 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1189 (1222)
Q Consensus 1150 ~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS 1189 (1222)
....+||+||.+|.+++...
T Consensus 376 --------------------~R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 376 --------------------RRDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred --------------------ccCeecHHHHHHHHHHHHhc
Confidence 12469999999999998643
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-44 Score=415.49 Aligned_cols=296 Identities=33% Similarity=0.583 Sum_probs=261.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 995 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 995 (1222)
+++|.+|||+++...+|.+.+.. +.+|+.|...| ..||+|||||||||||||+||+|||.+++.||+.++.+++.+.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lG-v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLG-VRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcC-CCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 67999999999999999999988 99999999999 45779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccC--CCcEEEEEecCCCCCC
Q 000925 996 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRPFDL 1073 (1222)
Q Consensus 996 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~--~~~VlVIaTTN~p~~L 1073 (1222)
.|++|+.++.+|..|+...|||+||||||.+.++|.. ...+.-+++..+|+..||++.... +.+|+||+|||+|+.|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 9999999999999999999999999999999998876 667788999999999999987653 4789999999999999
Q ss_pred cHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH-
Q 000925 1074 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK- 1150 (1222)
Q Consensus 1074 d~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~- 1150 (1222)
|++++| ||++.|.+..|+..+|.+||+.++++..+..++|+..||..|.||.|+||..||.+|+..|++|+++....
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p 422 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP 422 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999999874431
Q ss_pred HHHHHHhhcc---------------------------------CCCCCCC--ccccccccHHHHHHHHHHhccccccccc
Q 000925 1151 ERALALAENR---------------------------------ASPPLYS--SVDVRPLKMDDFKYAHEQVCASVSSEST 1195 (1222)
Q Consensus 1151 e~~~~~~~~~---------------------------------~~~~~~~--~~~~r~Lt~eDF~~Alekv~pS~s~e~~ 1195 (1222)
....-.+++. ..+..++ ......|+++||.+|+..+|||..+++.
T Consensus 423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF 502 (802)
T KOG0733|consen 423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF 502 (802)
T ss_pred cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence 0000000000 0000011 1223468999999999999999999999
Q ss_pred chhhhhHHHHhhcCCCccc
Q 000925 1196 NMNELLQWNELYGEGGSRK 1214 (1222)
Q Consensus 1196 ~~~~~v~W~DigGl~~~Rk 1214 (1222)
...|.+.|+||||++.+|.
T Consensus 503 ~tVPdVtW~dIGaL~~vR~ 521 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRL 521 (802)
T ss_pred eecCCCChhhcccHHHHHH
Confidence 9999999999999998875
No 10
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-41 Score=392.15 Aligned_cols=297 Identities=31% Similarity=0.533 Sum_probs=252.3
Q ss_pred cccchhhhccccCCCHHHHHHHHhhhhhhhhccccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhccccChhH
Q 000925 821 CVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENE 900 (1222)
Q Consensus 821 ~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~~eik~~~~slk~lv~~~e 900 (1222)
-.||+.++.+|.||..-|+.-+|.-|...|+. +.+.+..| .....+|+.++....|..
T Consensus 595 ~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~l---eris~~~k--------lltke~f~ksL~~F~P~a----------- 652 (952)
T KOG0735|consen 595 MDDLDFLSVKTEGYLATDLVIFVERAIHEAFL---ERISNGPK--------LLTKELFEKSLKDFVPLA----------- 652 (952)
T ss_pred hHHHHHHHHhcCCccchhHHHHHHHHHHHHHH---HHhccCcc--------cchHHHHHHHHHhcChHH-----------
Confidence 34677799999999999999999999999883 22222222 223345554443333221
Q ss_pred HHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhC
Q 000925 901 FEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 980 (1222)
Q Consensus 901 ~~~~ll~~vIp~~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg 980 (1222)
+.++-.....+..|+||+|+.++++.|++.+++|.++|.+|.+..+.- +.|||||||||||||+||.++|...+
T Consensus 653 -----LR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~-~~giLLyGppGcGKT~la~a~a~~~~ 726 (952)
T KOG0735|consen 653 -----LRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRL-RTGILLYGPPGCGKTLLASAIASNSN 726 (952)
T ss_pred -----hhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCccc-ccceEEECCCCCcHHHHHHHHHhhCC
Confidence 111111112247899999999999999999999999999999887544 48999999999999999999999999
Q ss_pred CcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCc
Q 000925 981 ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1060 (1222)
Q Consensus 981 ~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~ 1060 (1222)
..||.+.+++|+++|+|.+|++++.+|..|+..+|||||+||+|++.++|+.. ......++.++++++|||... -..
T Consensus 727 ~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD-sTGVTDRVVNQlLTelDG~Eg--l~G 803 (952)
T KOG0735|consen 727 LRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD-STGVTDRVVNQLLTELDGAEG--LDG 803 (952)
T ss_pred eeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC-CCCchHHHHHHHHHhhccccc--cce
Confidence 99999999999999999999999999999999999999999999999998753 234567899999999999754 378
Q ss_pred EEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000925 1061 VLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAH 1138 (1222)
Q Consensus 1061 VlVIaTTN~p~~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~ 1138 (1222)
|.|+|+|.+|+.+|++++| |+++.++.++|+..+|.+|++.+.....+..++|++.+|.+|+||+|+||..|+-.|..
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999888888899999999999999999999999999999
Q ss_pred hhhHHHHHHH
Q 000925 1139 CPIREILEKE 1148 (1222)
Q Consensus 1139 ~airrii~~~ 1148 (1222)
.++++++...
T Consensus 884 ~avh~~l~~~ 893 (952)
T KOG0735|consen 884 AAVHEILKRE 893 (952)
T ss_pred HHHHHHHHhc
Confidence 9999987544
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-41 Score=364.59 Aligned_cols=300 Identities=37% Similarity=0.634 Sum_probs=256.0
Q ss_pred hcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEE
Q 000925 906 LADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN 985 (1222)
Q Consensus 906 l~~vIp~~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~ 985 (1222)
++..|..+.+++.|+|+.|++..|++|++.|.+|+..|++|... .+|.+||||||||||||++||+|+|.+.+..|+.
T Consensus 119 L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFS 196 (439)
T KOG0739|consen 119 LNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFS 196 (439)
T ss_pred hhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEE
Confidence 34555667789999999999999999999999999999999754 6788999999999999999999999999999999
Q ss_pred EeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEE
Q 000925 986 ISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1065 (1222)
Q Consensus 986 v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIa 1065 (1222)
++.++|+++|.|++|+.++++|++|+.++|+||||||||.|++.|. .++.+..+++..+|+.+|.|.... +..|+|++
T Consensus 197 vSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~-enEseasRRIKTEfLVQMqGVG~d-~~gvLVLg 274 (439)
T KOG0739|consen 197 VSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS-ENESEASRRIKTEFLVQMQGVGND-NDGVLVLG 274 (439)
T ss_pred eehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC-CCchHHHHHHHHHHHHhhhccccC-CCceEEEe
Confidence 9999999999999999999999999999999999999999988775 467888999999999999998754 58899999
Q ss_pred ecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcc-cCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHH
Q 000925 1066 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1144 (1222)
Q Consensus 1066 TTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~-l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airri 1144 (1222)
+||-|+.||.+++|||.++|+|++|+...|..+|+.++.... ...+.|+..|+.+|+||+|+||.-+++.|.+.++|++
T Consensus 275 ATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkv 354 (439)
T KOG0739|consen 275 ATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKV 354 (439)
T ss_pred cCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHh
Confidence 999999999999999999999999999999999999988744 3378899999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHh---hccCCCCCCC-----------------ccccccccHHHHHHHHHHhcccccccccchhhhhHHH
Q 000925 1145 LEKEKKERALALA---ENRASPPLYS-----------------SVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWN 1204 (1222)
Q Consensus 1145 i~~~~~e~~~~~~---~~~~~~~~~~-----------------~~~~r~Lt~eDF~~Alekv~pS~s~e~~~~~~~v~W~ 1204 (1222)
...-+..+.-.-+ +-...-..++ ..-..+|||.||..++.+.+|++... .+....+|.
T Consensus 355 qsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~--Dl~k~~~Ft 432 (439)
T KOG0739|consen 355 QSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNED--DLLKHEKFT 432 (439)
T ss_pred hhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHH--HHHHHHHHH
Confidence 6655432210000 0000000011 11134799999999999999999766 456678899
Q ss_pred HhhcCCC
Q 000925 1205 ELYGEGG 1211 (1222)
Q Consensus 1205 DigGl~~ 1211 (1222)
+-||.+|
T Consensus 433 ~dFGqEg 439 (439)
T KOG0739|consen 433 EDFGQEG 439 (439)
T ss_pred HhhccCC
Confidence 9888765
No 12
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-40 Score=380.15 Aligned_cols=371 Identities=22% Similarity=0.270 Sum_probs=271.7
Q ss_pred CeEEEEcchhhhhc-------cC----hhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhh
Q 000925 676 PLIVFVKDIEKSLT-------GN----NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTAL 742 (1222)
Q Consensus 676 P~Ilfi~die~~l~-------~~----~~~~~~l~~~L~~l~--g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l 742 (1222)
=-||-||++|. +| ++ ....+.|-++++... .||+|||=+||.|=
T Consensus 325 LHIIIFDEiDA-ICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~Dl---------------------- 381 (744)
T KOG0741|consen 325 LHIIIFDEIDA-ICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDL---------------------- 381 (744)
T ss_pred ceEEEehhhHH-HHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhh----------------------
Confidence 34999999999 66 33 344444444444442 39999999996332
Q ss_pred ccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHH-hhhCCC
Q 000925 743 LDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGL 819 (1222)
Q Consensus 743 ~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~-l~~~~l 819 (1222)
+ |||||| ||++|+|+.|||++||.+|++|||. |+++++
T Consensus 382 --------I-------------------------------DEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~ 422 (744)
T KOG0741|consen 382 --------I-------------------------------DEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNK 422 (744)
T ss_pred --------H-------------------------------HHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCC
Confidence 2 469999 9999999999999999999999998 999987
Q ss_pred --CcccchhhhccccCCCHHHHHHHHhhhhhhhhccccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhccccC
Q 000925 820 --DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVT 897 (1222)
Q Consensus 820 --~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~~eik~~~~slk~lv~ 897 (1222)
.++||++||.+||||+||||++||++|.|+|+.|+.....+........+++++...||..++.+++|+++ ..
T Consensus 423 l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG-----~s 497 (744)
T KOG0741|consen 423 LSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFG-----IS 497 (744)
T ss_pred CCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccC-----CC
Confidence 89999999999999999999999999999999998764433333445668899999999999999999998 66
Q ss_pred hhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHH
Q 000925 898 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 977 (1222)
Q Consensus 898 ~~e~~~~ll~~vIp~~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~ 977 (1222)
+++++.....+++.+..+ ...+.+.-..++.+ ++.+ -..+-..+||+||||+|||+||..||.
T Consensus 498 ee~l~~~~~~Gmi~~g~~---------v~~il~~G~llv~q-vk~s-------~~s~lvSvLl~Gp~~sGKTaLAA~iA~ 560 (744)
T KOG0741|consen 498 EEDLERFVMNGMINWGPP---------VTRILDDGKLLVQQ-VKNS-------ERSPLVSVLLEGPPGSGKTALAAKIAL 560 (744)
T ss_pred HHHHHHHHhCCceeeccc---------HHHHHhhHHHHHHH-hhcc-------ccCcceEEEEecCCCCChHHHHHHHHh
Confidence 788888898998888653 12233333333332 1211 134456799999999999999999999
Q ss_pred HhCCcEEEEeccc-cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCccc
Q 000925 978 EAGANFINISMSS-ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1056 (1222)
Q Consensus 978 elg~~fi~v~~s~-L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k 1056 (1222)
..++||+.+-.++ +.+..-...-.+++.+|+.|++.+-+||+||+|++|+. .-+......+.+++.|+..+...+++
T Consensus 561 ~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD--~vpIGPRfSN~vlQaL~VllK~~ppk 638 (744)
T KOG0741|consen 561 SSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD--YVPIGPRFSNLVLQALLVLLKKQPPK 638 (744)
T ss_pred hcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc--ccccCchhhHHHHHHHHHHhccCCCC
Confidence 9999999987765 33322122235799999999999999999999999972 23344556788999999999887765
Q ss_pred CCCcEEEEEecCCCCCCc-HHHHhcccccccCCCCCH-HHHHHHHHHHHhhcccCCcccHHHHHHHcCC----CcHHHHH
Q 000925 1057 DKERVLVLAATNRPFDLD-EAVVRRLPRRLMVNLPDA-PNREKIIRVILAKEELASDVDLEGIANMADG----YSGSDLK 1130 (1222)
Q Consensus 1057 ~~~~VlVIaTTN~p~~Ld-~aLlrRF~~~I~I~lPd~-eeR~eILk~lL~k~~l~sdidl~~LA~~t~G----ySg~DL~ 1130 (1222)
. .+++|++||++.+.|. -.+...|+..+.++..+. ++-.+++. ..++..+.+...++....+ .-...|.
T Consensus 639 g-~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~----~~n~fsd~~~~~~~~~~~~~~~~vgIKklL 713 (744)
T KOG0741|consen 639 G-RKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLE----ELNIFSDDEVRAIAEQLLSKKVNVGIKKLL 713 (744)
T ss_pred C-ceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHH----HccCCCcchhHHHHHHHhccccchhHHHHH
Confidence 4 6889999998776655 356668986666654443 33344433 2233344444444444332 2235555
Q ss_pred HHHHHHH
Q 000925 1131 NLCVTAA 1137 (1222)
Q Consensus 1131 ~L~~~Aa 1137 (1222)
.|+.+|.
T Consensus 714 ~lie~a~ 720 (744)
T KOG0741|consen 714 MLIEMAR 720 (744)
T ss_pred HHHHHHh
Confidence 6666654
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=6e-36 Score=357.19 Aligned_cols=412 Identities=22% Similarity=0.373 Sum_probs=296.8
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcchhhhhccChhhHHHHHHH---HhcCCCCEEEEEeccCCCCccccCCCCCceeeccC
Q 000925 660 AINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSK---LENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFG 736 (1222)
Q Consensus 660 ~~~~l~ev~~~esk~~P~Ilfi~die~~l~~~~~~~~~l~~~---L~~l~g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~ 736 (1222)
.+++| +.+......+|.|+.++|.+.++ .+..+...|+.. +...+..+||++....
T Consensus 67 p~~al-~~i~~~~~~~~~~~vl~d~h~~~-~~~~~~r~l~~l~~~~~~~~~~~i~~~~~~~------------------- 125 (489)
T CHL00195 67 PLQAL-EFIEKLTPETPALFLLKDFNRFL-NDISISRKLRNLSRILKTQPKTIIIIASELN------------------- 125 (489)
T ss_pred HHHHH-HHHHhcCCCCCcEEEEecchhhh-cchHHHHHHHHHHHHHHhCCCEEEEEcCCCC-------------------
Confidence 44444 34444333468999999999977 444444444432 2333445555555431
Q ss_pred cchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhcchhhhccchhhHHHHHhhh
Q 000925 737 SNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSR 816 (1222)
Q Consensus 737 ~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~IhT~l~~ 816 (1222)
.|..+.+ .+ -.+++++|+.+.+..-.+.... -..
T Consensus 126 ----------~p~el~~-----------------~~-~~~~~~lP~~~ei~~~l~~~~~------------------~~~ 159 (489)
T CHL00195 126 ----------IPKELKD-----------------LI-TVLEFPLPTESEIKKELTRLIK------------------SLN 159 (489)
T ss_pred ----------CCHHHHh-----------------ce-eEEeecCcCHHHHHHHHHHHHH------------------hcC
Confidence 3433332 22 3456777776665443221110 001
Q ss_pred CCCCcccchhhhccccCCCHHHHHHHHhhhhhhhhccccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhcccc
Q 000925 817 NGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVV 896 (1222)
Q Consensus 817 ~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~~eik~~~~slk~lv 896 (1222)
..++...++.|+..+.|++-.+++.++..+... .+ .++.+.+...+.. .+.+ +
T Consensus 160 ~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~-----------~~--~~~~~~~~~i~~~-------k~q~-------~ 212 (489)
T CHL00195 160 IKIDSELLENLTRACQGLSLERIRRVLSKIIAT-----------YK--TIDENSIPLILEE-------KKQI-------I 212 (489)
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------cC--CCChhhHHHHHHH-------HHHH-------H
Confidence 135677888999999999999999988764321 11 1222322222110 0000 0
Q ss_pred ChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHH
Q 000925 897 TENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 976 (1222)
Q Consensus 897 ~~~e~~~~ll~~vIp~~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA 976 (1222)
.. ..++.......+|++|+|++.+|+.+.+..... ...+...++ .+++||||+||||||||++|++||
T Consensus 213 ~~--------~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA 280 (489)
T CHL00195 213 SQ--------TEILEFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIA 280 (489)
T ss_pred hh--------hccccccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHH
Confidence 00 111111223578999999999999998754321 222334453 466999999999999999999999
Q ss_pred HHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCccc
Q 000925 977 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1056 (1222)
Q Consensus 977 ~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k 1056 (1222)
++++.+|+.++++.+.+.|+|+++..++++|..|+..+|+||||||||.++..+...+......+++.+|+..++.
T Consensus 281 ~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~---- 356 (489)
T CHL00195 281 NDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE---- 356 (489)
T ss_pred HHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc----
Confidence 9999999999999999999999999999999999999999999999999987655445556677888899888764
Q ss_pred CCCcEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccC--CcccHHHHHHHcCCCcHHHHHHH
Q 000925 1057 DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA--SDVDLEGIANMADGYSGSDLKNL 1132 (1222)
Q Consensus 1057 ~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~--sdidl~~LA~~t~GySg~DL~~L 1132 (1222)
...+|+||+|||.++.||++++| ||+++++|++|+.++|.+||+.++.+.... .+.++..||..|+||+|+||.++
T Consensus 357 ~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~l 436 (489)
T CHL00195 357 KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQS 436 (489)
T ss_pred CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHH
Confidence 23679999999999999999998 999999999999999999999999886432 57899999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHhhc
Q 000925 1133 CVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1208 (1222)
Q Consensus 1133 ~~~Aa~~airrii~~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~e~~~~~~~v~W~DigG 1208 (1222)
|.+|+..+..+ .+.++.+||..|++++.|++..........+.|-.-+.
T Consensus 437 v~eA~~~A~~~---------------------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~~ 485 (489)
T CHL00195 437 IIEAMYIAFYE---------------------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSGR 485 (489)
T ss_pred HHHHHHHHHHc---------------------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcCC
Confidence 99998766542 14689999999999999998766666778899976543
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=348.82 Aligned_cols=266 Identities=35% Similarity=0.562 Sum_probs=233.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000925 914 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 914 e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 993 (1222)
..+++|+|+-|.++.|++|+|.|.. |+.|+.|.+.| .+-|+||||+||||||||+||+|+|.+.++||+...++++..
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 3478999999999999999999885 99999999988 556699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCC
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1073 (1222)
Q Consensus 994 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L 1073 (1222)
.++|.+.+.++.+|..|++.+||||||||||.+.++|.... +...++.+++|+..|||+..+ ..|+||++||.|+.|
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~-~~y~kqTlNQLLvEmDGF~qN--eGiIvigATNfpe~L 452 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD-QHYAKQTLNQLLVEMDGFKQN--EGIIVIGATNFPEAL 452 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH-HHHHHHHHHHHHHHhcCcCcC--CceEEEeccCChhhh
Confidence 99999999999999999999999999999999988886544 448899999999999999755 789999999999999
Q ss_pred cHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000925 1074 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1151 (1222)
Q Consensus 1074 d~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~e 1151 (1222)
|+++.| ||+++|.++.||..-|.+||+.++.+..+..++|+..||+-|.||+|+||.||++.|+..|..+.
T Consensus 453 D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg------- 525 (752)
T KOG0734|consen 453 DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG------- 525 (752)
T ss_pred hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999998765431
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHhhcCC
Q 000925 1152 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 1210 (1222)
Q Consensus 1152 ~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~e~~~~~~~v~W~DigGl~ 1210 (1222)
...|+|.|++-|..++-.-.-+......+.-+-.--|.++
T Consensus 526 -------------------a~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~ 565 (752)
T KOG0734|consen 526 -------------------AEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEG 565 (752)
T ss_pred -------------------cccccHHHHhhhhhheeecccccccccChhhhhhhhhhcc
Confidence 1358999999999987655544433333333333334333
No 15
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-35 Score=343.55 Aligned_cols=279 Identities=47% Similarity=0.807 Sum_probs=253.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000925 915 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 994 (1222)
Q Consensus 915 ~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~ 994 (1222)
..+.|+|+.|++.+++.+.+++.+|+.++++|.. +..|.+++||+||||+|||+|+++||.+.++.|+.++.+.|.++
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~g--lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLG--LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhc--cccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 3688999999999999999999999999999974 46788999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCc
Q 000925 995 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1074 (1222)
Q Consensus 995 ~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1074 (1222)
|.|++++.++.+|..|+..+|+||||||||+++.+| .+..++..+++..+|+.++++......++|+||+|||.|+.+|
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999998 6678888899999999999999988889999999999999999
Q ss_pred HHHHhcccccccCCCCCHHHHHHHHHHHHhhc-ccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000925 1075 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1153 (1222)
Q Consensus 1075 ~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~-~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~e~~ 1153 (1222)
++++|||..+++|++|+.+.|..+|+.++.+. ....+.+++.|+++|+||+++||..+|..|++..++++......+
T Consensus 305 ea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~-- 382 (428)
T KOG0740|consen 305 EAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLE-- 382 (428)
T ss_pred HHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhh--
Confidence 99999999999999999999999999999987 334678999999999999999999999999999998764320100
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHhhcCCC
Q 000925 1154 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1211 (1222)
Q Consensus 1154 ~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~e~~~~~~~v~W~DigGl~~ 1211 (1222)
-...+..|+++..||+.|++.++++++.+ ....+..|++.+|+..
T Consensus 383 -----------~~~~~~~r~i~~~df~~a~~~i~~~~s~~--~l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 383 -----------FIDADKIRPITYPDFKNAFKNIKPSVSLE--GLEKYEKWDKEFGSSE 427 (428)
T ss_pred -----------hcchhccCCCCcchHHHHHHhhccccCcc--ccchhHHHhhhhcccc
Confidence 01234678999999999999999999887 5567889999999764
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-35 Score=312.07 Aligned_cols=244 Identities=32% Similarity=0.596 Sum_probs=224.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000925 914 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 914 e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 993 (1222)
.+..+++||||++.++++|.+.+.+|+.+++.|.+.++ +||+|+|+|||||||||.+|+|.|.+.+..|..+.++.|..
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 44568999999999999999999999999999999995 57799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC---chHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCC
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1070 (1222)
Q Consensus 994 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~---~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p 1070 (1222)
.|+|.+.+.++..|..|+..+|+||||||+|.+..+|... +..+ ..+.+.+|+.+++|+.+. .+|-||++||+.
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDRE-VQRTMLELLNQLDGFss~--~~vKviAATNRv 320 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDRE-VQRTMLELLNQLDGFSSD--DRVKVIAATNRV 320 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHH-HHHHHHHHHHhhcCCCCc--cceEEEeecccc
Confidence 9999999999999999999999999999999998887653 3344 445667899999999865 789999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 000925 1071 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1148 (1222)
Q Consensus 1071 ~~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~ 1148 (1222)
+.|||+++| |+++.|+|+.|+.+.|..|++.+.+++...+++++++||+-|++|+|+.++.+|.+|.+.++|+-
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~---- 396 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG---- 396 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999872
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000925 1149 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1187 (1222)
Q Consensus 1149 ~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~ 1187 (1222)
...++.+||.+++.+++
T Consensus 397 ----------------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 397 ----------------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred ----------------------cccccHHHHHHHHHHHH
Confidence 23589999999998876
No 17
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-34 Score=303.99 Aligned_cols=244 Identities=35% Similarity=0.612 Sum_probs=223.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 995 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 995 (1222)
..+++-+||++.+++++++.+.+|.++|++|...|+..| +|+|||||||||||.||+++|++..+.|+.++.++|..+|
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 557888999999999999999999999999999998776 9999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCC
Q 000925 996 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1073 (1222)
Q Consensus 996 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L 1073 (1222)
+|++...++.+|.+|+.|+|+|||+||||++...|.. .+......+.+.+|++++||+... .++-||++||+.+.|
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnridil 299 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRIDIL 299 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEeccccccc
Confidence 9999999999999999999999999999999876632 233344456677899999999754 789999999999999
Q ss_pred cHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000925 1074 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1151 (1222)
Q Consensus 1074 d~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~e 1151 (1222)
|++++| |+++.|+|++|+.+.|.+|++.+-+++++...+++..+|....|-+|++++.+|.+|.+.++|+-
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999861
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 000925 1152 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1188 (1222)
Q Consensus 1152 ~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~p 1188 (1222)
...+|.+||+-|..++-.
T Consensus 373 -------------------rvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 373 -------------------RVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred -------------------hccccHHHHHHHHHHHHh
Confidence 135899999999988743
No 18
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-34 Score=303.60 Aligned_cols=247 Identities=37% Similarity=0.631 Sum_probs=225.5
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000925 911 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 990 (1222)
Q Consensus 911 p~~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~ 990 (1222)
+...+.+++.||||++-+|+++++.+.+|+.+.++|.+-|+ .||+|+|||||||||||+||+|+|+...+.|+.+.+++
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigi-dpprgvllygppg~gktml~kava~~t~a~firvvgse 224 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGI-DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 224 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCC-CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHH
Confidence 33456889999999999999999999999999999999995 56799999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhHhhhccCCcccCCCcEEEEEecC
Q 000925 991 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1068 (1222)
Q Consensus 991 L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN 1068 (1222)
+..+|.|++...++.+|.+|+..+|+||||||||.+..+|... +......+++-+|+++|+|+... .+|-||++||
T Consensus 225 fvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatn 302 (408)
T KOG0727|consen 225 FVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATN 302 (408)
T ss_pred HHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecC
Confidence 9999999999999999999999999999999999999888652 33345567889999999999754 7899999999
Q ss_pred CCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHH
Q 000925 1069 RPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 1146 (1222)
Q Consensus 1069 ~p~~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~ 1146 (1222)
+.+.|||+++| |+++.|+|++|+..++.-+|..+..++.+.+++|++.+..+-+..+++||..+|++|.+.++|+.
T Consensus 303 radtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n-- 380 (408)
T KOG0727|consen 303 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN-- 380 (408)
T ss_pred cccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc--
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999862
Q ss_pred HHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh
Q 000925 1147 KEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1186 (1222)
Q Consensus 1147 ~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv 1186 (1222)
.-.+...||++|.+.+
T Consensus 381 ------------------------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 381 ------------------------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred ------------------------ceeeeHHHHHHHHHhh
Confidence 1246778999987764
No 19
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=313.59 Aligned_cols=243 Identities=39% Similarity=0.648 Sum_probs=222.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 995 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 995 (1222)
.-+|.||||++.++++|.+.+.+|+.+|+.|...| .+||+||+|||+||||||.||+|+|+...+.|+.+-.++|..+|
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemG-ikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQky 259 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcC-CCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 45899999999999999999999999999999998 46779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCC
Q 000925 996 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1073 (1222)
Q Consensus 996 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L 1073 (1222)
.|.+.+.++++|..|..++|+|+||||||.+..+|.+. +......+.+.+|+++++|+.. ++.|-||++||+.+.|
T Consensus 260 lGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--rgDvKvimATnrie~L 337 (440)
T KOG0726|consen 260 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIETL 337 (440)
T ss_pred hccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc--cCCeEEEEeccccccc
Confidence 99999999999999999999999999999998888542 2333344555689999999976 4789999999999999
Q ss_pred cHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000925 1074 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1151 (1222)
Q Consensus 1074 d~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~e 1151 (1222)
||+++| |+++.|.|++|+...+..||..+..++.+..+++++.+...-+.+||+||+++|.+|.+.|+|+.
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------- 410 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------- 410 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999999998862
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000925 1152 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1187 (1222)
Q Consensus 1152 ~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~ 1187 (1222)
...++++||..|.+++-
T Consensus 411 -------------------Rm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 411 -------------------RMKVTMEDFKKAKEKVL 427 (440)
T ss_pred -------------------HhhccHHHHHHHHHHHH
Confidence 13589999999999874
No 20
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-33 Score=338.90 Aligned_cols=248 Identities=42% Similarity=0.689 Sum_probs=226.0
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000925 913 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 992 (1222)
Q Consensus 913 ~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 992 (1222)
.+.+++|.|+.|.++++++|+|+|.. |+.|+.|.+.| .+.|+|+||+||||||||.||+|+|.++++||+.+++++++
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 34578999999999999999999985 99999999998 56679999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCC---CCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCC
Q 000925 993 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1069 (1222)
Q Consensus 993 s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~---~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~ 1069 (1222)
..+.|.....++.+|..|+..+|+||||||||.+...|. ..+.+......+++|+.+|||+... ..|+||++||+
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr 459 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNR 459 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCC
Confidence 999999899999999999999999999999999988874 3345556677899999999999765 78999999999
Q ss_pred CCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHH
Q 000925 1070 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 1146 (1222)
Q Consensus 1070 p~~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~ 1146 (1222)
++.||++++| ||++.|++++|+...|..|++.+++...+. ++.++..||.+|.||+|+||.++|++|+..+.|+-
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~-- 537 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG-- 537 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc--
Confidence 9999999999 999999999999999999999999998885 78889999999999999999999999999988862
Q ss_pred HHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 000925 1147 KEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1190 (1222)
Q Consensus 1147 ~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~ 1190 (1222)
...|+..||..|++++....
T Consensus 538 ------------------------~~~i~~~~~~~a~~Rvi~G~ 557 (774)
T KOG0731|consen 538 ------------------------LREIGTKDLEYAIERVIAGM 557 (774)
T ss_pred ------------------------cCccchhhHHHHHHHHhccc
Confidence 24588999999999776654
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.8e-33 Score=299.65 Aligned_cols=242 Identities=31% Similarity=0.485 Sum_probs=212.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 995 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 995 (1222)
..+|+|++|+++.|...+-++. .|..|+.|..+. |++||+|||||||||++|+++|++.+.|++.+...+|.+.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIME-YLENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHH-HhhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 5789999999999988765554 488999998775 58999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcH
Q 000925 996 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1075 (1222)
Q Consensus 996 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1075 (1222)
+|.+...|+++|+.|++.+|||+||||+|.+.-.|.-+.-......+.|.|++.|||+. .+..|..||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999997555333333345678999999999987 4588999999999999999
Q ss_pred HHHhcccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHH-HHHHHHHhhhhHHHHHHHHHHHHH
Q 000925 1076 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK-NLCVTAAHCPIREILEKEKKERAL 1154 (1222)
Q Consensus 1076 aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~-~L~~~Aa~~airrii~~~~~e~~~ 1154 (1222)
++++||...|+|.+|+.++|.+|++.++++..+.-+.++..++..+.|+||+||+ .++..|.++|+.+-
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed---------- 339 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED---------- 339 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc----------
Confidence 9999999999999999999999999999999998899999999999999999998 56777777777652
Q ss_pred HHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 000925 1155 ALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1190 (1222)
Q Consensus 1155 ~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~ 1190 (1222)
...|+.+||..|+++-++..
T Consensus 340 ----------------~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 340 ----------------REKVEREDIEKALKKERKRR 359 (368)
T ss_pred ----------------hhhhhHHHHHHHHHhhcccc
Confidence 12477899999999865543
No 22
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=9.3e-33 Score=323.46 Aligned_cols=246 Identities=38% Similarity=0.615 Sum_probs=221.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000925 914 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 914 e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 993 (1222)
.+.++|+||+|++.+++.|++.+.+|+.+++.|.+.++. |++++||+||||||||+||+++|++++.+|+.+.++.+..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~-~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGID-PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 457899999999999999999999999999999998854 6699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 994 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
.|.|+++..++.+|..|+..+|+||||||||.++..+... +......+++.+++..++++... .+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCch
Confidence 9999999999999999999999999999999998776432 22234557788888888887543 5799999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000925 1072 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1149 (1222)
Q Consensus 1072 ~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~ 1149 (1222)
.+|++++| ||++.|+|++|+.++|.+||+.++.+..+..++++..++..++||+++||.++|++|++.++++.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~----- 370 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN----- 370 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999999888889999999999999999999999999999988751
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 000925 1150 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1188 (1222)
Q Consensus 1150 ~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~p 1188 (1222)
...|+++||.+|++++..
T Consensus 371 ---------------------~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 371 ---------------------RYVILPKDFEKGYKTVVR 388 (398)
T ss_pred ---------------------CCccCHHHHHHHHHHHHh
Confidence 136999999999998753
No 23
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-33 Score=332.23 Aligned_cols=264 Identities=38% Similarity=0.599 Sum_probs=246.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 995 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 995 (1222)
.++ ++++|.......+++.+.+|++++..|...+ .+||+++|+|||||||||++++++|++.++.++.++++++++++
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g-~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIG-IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcC-CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 345 7899999999999999999999999999888 45679999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcC-CcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCc
Q 000925 996 FGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1074 (1222)
Q Consensus 996 ~G~se~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1074 (1222)
.|+++++++.+|++|.+++ |+||||||+|.+++++..... ..+++..+++..++++.. ..+++||++||+|+.|+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998865443 678899999999999863 37899999999999999
Q ss_pred HHHHh-cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000925 1075 EAVVR-RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1153 (1222)
Q Consensus 1075 ~aLlr-RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~e~~ 1153 (1222)
++++| ||++.+.|..|+..+|.+|++.+.+++++.++.++..+|..+.||.|+||..+|.+|+..++|+
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99999 9999999999999999999999999999888899999999999999999999999999988775
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHhhcCCCccccc
Q 000925 1154 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRKRK 1216 (1222)
Q Consensus 1154 ~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~e~~~~~~~v~W~DigGl~~~Rkk~ 1216 (1222)
++++|..|+..++||..++.....+++.|+||||++.+|++-
T Consensus 405 ---------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~el 446 (693)
T KOG0730|consen 405 ---------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKREL 446 (693)
T ss_pred ---------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHH
Confidence 668999999999999999999888999999999999998764
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=7.3e-32 Score=316.20 Aligned_cols=250 Identities=41% Similarity=0.686 Sum_probs=222.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000925 915 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 994 (1222)
Q Consensus 915 ~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~ 994 (1222)
+.++|++|+|++++++.|.+.+.+|+.+++.|...++. ++++|||+||||||||++|+++|++++.+|+.++++++...
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 46799999999999999999999999999999988854 55899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc--hHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCC
Q 000925 995 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1072 (1222)
Q Consensus 995 ~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~ 1072 (1222)
|.|+.+..++.+|..|+...|+||||||||.++..+.... ......+.+.+++..++++.. ..+++||+|||+++.
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRIDI 282 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChhh
Confidence 9999999999999999999999999999999987664322 122345566678878887653 367999999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000925 1073 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1150 (1222)
Q Consensus 1073 Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~ 1150 (1222)
++++++| ||++.|.|++|+.++|.+||+.++.+..+..+.++..||..|+||+++||..+|.+|++.++++.
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~------ 356 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD------ 356 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 9999998 99999999999999999999999998888888999999999999999999999999999887751
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccccc
Q 000925 1151 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1193 (1222)
Q Consensus 1151 e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~e 1193 (1222)
...|+++||.+|+++++++...+
T Consensus 357 --------------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 --------------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred --------------------CCCcCHHHHHHHHHHHhcccccc
Confidence 13589999999999999887665
No 25
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-32 Score=294.40 Aligned_cols=248 Identities=33% Similarity=0.580 Sum_probs=224.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000925 914 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 914 e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 993 (1222)
.+.+++.|+||..++++.|++.+..|+.+|+.|.+.++ .||+|||||||||||||.+|+|+|+..++.||.+-.++|..
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgi-dppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGI-DPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCC-CCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 45789999999999999999999999999999999995 46699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 994 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
+|+|++...++.+|++|+..+-||||+||||.+.+.|... +......+.+.+++.+++|+.+. +++-|+++||+|+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrpd 327 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRPD 327 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCCC
Confidence 9999999999999999999999999999999999888654 23334456667899999999754 8899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000925 1072 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1149 (1222)
Q Consensus 1072 ~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~ 1149 (1222)
.||++++| |+++.++|.+|+.+.|..||+.+.+.+....++-++.||..+..-+|++|+.+|.+|.+.++|.-
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar----- 402 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR----- 402 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH-----
Confidence 99999999 99999999999999999999999999888899999999999999999999999999999998741
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 000925 1150 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1190 (1222)
Q Consensus 1150 ~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~ 1190 (1222)
.+..|-.||.+|+.++...+
T Consensus 403 ---------------------rk~atekdfl~av~kvvkgy 422 (435)
T KOG0729|consen 403 ---------------------RKVATEKDFLDAVNKVVKGY 422 (435)
T ss_pred ---------------------hhhhhHHHHHHHHHHHHHHH
Confidence 12367789999999876544
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=5.6e-31 Score=310.60 Aligned_cols=245 Identities=38% Similarity=0.624 Sum_probs=218.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000925 915 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 994 (1222)
Q Consensus 915 ~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~ 994 (1222)
+..+|+||+|++++++.|.+++.+|+.++++|...++. +++++||+||||||||++|++||++++.+|+.+.++++.+.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 46799999999999999999999999999999998854 66899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCC
Q 000925 995 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1072 (1222)
Q Consensus 995 ~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~ 1072 (1222)
|.|+.+..++.+|..|....|+||||||||.++.++... +......+.+.+++..++++... .++.||+|||+++.
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNRIES 334 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCChHH
Confidence 999999999999999999999999999999998776431 22233445667788888887533 57999999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000925 1073 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1150 (1222)
Q Consensus 1073 Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~ 1150 (1222)
+|++++| ||++.|+|++|+.++|.+||+.++.+..+..++++..++..++||+++||.++|.+|+..|+++-
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------ 408 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------ 408 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 9999998 99999999999999999999999999888889999999999999999999999999999988751
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 000925 1151 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1188 (1222)
Q Consensus 1151 e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~p 1188 (1222)
...|+++||..|++++..
T Consensus 409 --------------------r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 409 --------------------RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred --------------------CCccCHHHHHHHHHHHHh
Confidence 135999999999999753
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=9.5e-31 Score=315.80 Aligned_cols=270 Identities=39% Similarity=0.597 Sum_probs=230.5
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000925 912 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 991 (1222)
Q Consensus 912 ~~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L 991 (1222)
...+.++|+||+|++++++++.+.+.. +.+++.|.+.+ ..+++|+||+||||||||+||++||.+++.+|+.++++++
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g-~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLG-AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 335578999999999999999998875 88899888777 4556899999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCC
Q 000925 992 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1069 (1222)
Q Consensus 992 ~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~ 1069 (1222)
...+.|..++.++.+|..|+..+|+||||||||.++..+... ........++++|+..++++... .+++||+|||+
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~ 202 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNR 202 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCC
Confidence 999999999999999999999999999999999998766532 22344567889999999987543 67999999999
Q ss_pred CCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHH
Q 000925 1070 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1147 (1222)
Q Consensus 1070 p~~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~ 1147 (1222)
++.||++++| ||++.+.+++|+.++|.+||+.++....+..+.++..+|..+.||+++||.++|++|+..+.++
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~---- 278 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK---- 278 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc----
Confidence 9999999998 9999999999999999999999999877777889999999999999999999999998766553
Q ss_pred HHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHhhcCCC
Q 000925 1148 EKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1211 (1222)
Q Consensus 1148 ~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~e~~~~~~~v~W~DigGl~~ 1211 (1222)
....++.+||..|++++..........+.+..+|...+.+.|
T Consensus 279 ----------------------~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaG 320 (495)
T TIGR01241 279 ----------------------NKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAG 320 (495)
T ss_pred ----------------------CCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh
Confidence 124689999999999886654444444566667776665544
No 28
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.8e-31 Score=314.80 Aligned_cols=252 Identities=40% Similarity=0.621 Sum_probs=228.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000925 914 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 914 e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 993 (1222)
...++|.|+.|.++.++++.+.|.. ++.|..|.+.|. +-|+|+||+||||||||+||+++|.+.+.||+.++.+++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 3478999999999999999999985 899999998886 66699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 994 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
.++|-+...++.+|..|++++||||||||||.+..+|+. .+.+....+.+++++.+|||+.. +..|+||++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcc
Confidence 999999999999999999999999999999999876642 34556667899999999999873 47899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000925 1072 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1149 (1222)
Q Consensus 1072 ~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~ 1149 (1222)
.||++++| ||++.|.++.|+...|++|++.++++..+..++++..+|+.|.||+++||.+++++|+..+.|+
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~------ 373 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARR------ 373 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHh------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999988886
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccccccc
Q 000925 1150 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSEST 1195 (1222)
Q Consensus 1150 ~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~e~~ 1195 (1222)
....++|.||.+|++++..-..+...
T Consensus 374 --------------------n~~~i~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 374 --------------------NKKEITMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred --------------------cCeeEeccchHHHHHHHhcCcCcCCc
Confidence 12468999999999998665544433
No 29
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=7.3e-30 Score=321.17 Aligned_cols=289 Identities=37% Similarity=0.614 Sum_probs=247.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000925 915 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 994 (1222)
Q Consensus 915 ~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~ 994 (1222)
..++|++|+|++.+++.|++.+.+|+.++++|...++ .+++++||+||||||||+||++||++++.+|+.++++++.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 3679999999999999999999999999999998885 466899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCc
Q 000925 995 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1074 (1222)
Q Consensus 995 ~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1074 (1222)
+.|..+..++.+|..|....|+||||||||.+++.+... ..+...++.++|+..++++.. ...++||++||.++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~-~~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV-TGEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC-cchHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcC
Confidence 999999999999999999999999999999998776542 223345678888888888753 36899999999999999
Q ss_pred HHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000925 1075 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1152 (1222)
Q Consensus 1075 ~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~e~ 1152 (1222)
+++++ ||++.+.+++|+.++|.+||+.+.....+..+.++..++..+.||+++||..+|..|+..++++.+.......
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 9999999999999999999999988877778889999999999999999999999999999988754221100
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhHHHHhhcCCCccc
Q 000925 1153 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1214 (1222)
Q Consensus 1153 ~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~e~~~~~~~v~W~DigGl~~~Rk 1214 (1222)
. ... ..........++++||..|++.++|+...+.....+.+.|+||+|++.+|+
T Consensus 409 ~----~~~---i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~ 463 (733)
T TIGR01243 409 E----AEE---IPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQ 463 (733)
T ss_pred c----ccc---ccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHH
Confidence 0 000 000111234689999999999999999888777778999999999988875
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=5.4e-29 Score=289.78 Aligned_cols=244 Identities=44% Similarity=0.718 Sum_probs=213.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000925 914 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 914 e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 993 (1222)
.+.++|++|+|++++++.|.+++..|+.+++.|...++. +++|+||+||||||||++|+++|++++.+|+.+.+..+..
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 346789999999999999999999999999999988854 5689999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc--hHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 994 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
.++|+....++.+|..|+...|+||||||+|.++..+.... ......+.+.+++..++++.. ..++.||+|||.++
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPD 272 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChh
Confidence 89999999999999999999999999999999986654321 122334556677777777643 35799999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000925 1072 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1149 (1222)
Q Consensus 1072 ~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~ 1149 (1222)
.++++++| ||++.+.|+.|+.++|.+||+.++....+..+.++..++..++||+++||.++|.+|++.++++.
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~----- 347 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE----- 347 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 99999998 99999999999999999999999988877778899999999999999999999999999987751
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh
Q 000925 1150 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1186 (1222)
Q Consensus 1150 ~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv 1186 (1222)
...|+.+||.+|++++
T Consensus 348 ---------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 ---------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred ---------------------CCccCHHHHHHHHHHh
Confidence 1359999999999875
No 31
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-30 Score=322.74 Aligned_cols=403 Identities=19% Similarity=0.215 Sum_probs=287.8
Q ss_pred CceeeecCCCCCCCCCC-----CCcCCCCC---cccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcchh
Q 000925 614 KIGVRFDRSIPEGNNLG-----GFCEDDHG---FFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIE 685 (1222)
Q Consensus 614 kv~v~fd~~~~~~~~l~-----~~c~~~~~---~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~die 685 (1222)
.=||.|+.|+..|.+|+ +.|..+.. ||++....| .+.|..+..+.+..||+.+.. ++|+||||++|+
T Consensus 299 PrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~--lskwvgEaERqlrllFeeA~k---~qPSIIffdeId 373 (1080)
T KOG0732|consen 299 PRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC--LSKWVGEAERQLRLLFEEAQK---TQPSIIFFDEID 373 (1080)
T ss_pred CcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh--hccccCcHHHHHHHHHHHHhc---cCceEEeccccc
Confidence 44899999999999987 67776555 898887777 568999999999999999988 999999999999
Q ss_pred hhhc-----cChhhHHHHHHHHhcC------CCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCcccc
Q 000925 686 KSLT-----GNNDAYGALKSKLENL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRL 754 (1222)
Q Consensus 686 ~~l~-----~~~~~~~~l~~~L~~l------~g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~~~ 754 (1222)
. |+ .+.+.|++++++|..| .|+|||||++||+|. +++
T Consensus 374 G-lapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda------------------------------~dp- 421 (1080)
T KOG0732|consen 374 G-LAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDA------------------------------IDP- 421 (1080)
T ss_pred c-ccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccc------------------------------cch-
Confidence 8 55 5799999999999988 579999999995444 443
Q ss_pred ccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHHhhhCCCCcccchhhhcccc
Q 000925 755 HDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQ 832 (1222)
Q Consensus 755 ~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~dLe~La~~tk 832 (1222)
||+| ||+++|||+||+..+|..|+.|||+.|.+++.-..+..||..|.
T Consensus 422 ------------------------------aLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~ 471 (1080)
T KOG0732|consen 422 ------------------------------ALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETS 471 (1080)
T ss_pred ------------------------------hhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhcc
Confidence 9988 99999999999999999999999999999999899999999999
Q ss_pred CCCHHHHHHHHhhhhhhhhccccCCCCC-CCccccccCchhhhHHHHHhhhhhhhhhhhhhccc--cChhHHHHHHhcCC
Q 000925 833 TLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQGIQSESKSLKKSLKDV--VTENEFEKKLLADV 909 (1222)
Q Consensus 833 g~sgadI~~Lv~~A~s~Al~r~~~~i~~-~~kl~id~~sI~~~~~df~~a~~eik~~~~slk~l--v~~~e~~~~ll~~v 909 (1222)
||+||||+++|++|+..++++.++++|. ..++.+++..+++...+|..+...+.+....-..+ .+.......++
T Consensus 472 gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll--- 548 (1080)
T KOG0732|consen 472 GYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLL--- 548 (1080)
T ss_pred ccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceeccc---
Confidence 9999999999999999999999999998 88899999999999999998877665432110000 00000000000
Q ss_pred CCCCCCCCCcccccCcHHHHHHHHHHHHccccChhh-hhcCCCCCCCccceEECCCCChHHHHHHHHHHHh-CCcEEEEe
Q 000925 910 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPEL-FCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINIS 987 (1222)
Q Consensus 910 Ip~~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pel-f~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el-g~~fi~v~ 987 (1222)
+-.......+.+.-.......+.+...+.++..+. |.-..+.+| .+||.|..|.|.+++..+|.+.+ +.++....
T Consensus 549 -~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~--~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~ 625 (1080)
T KOG0732|consen 549 -PFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRP--RLLINGGKGSGQDYLGPAILHRLEGLPVQSLD 625 (1080)
T ss_pred -chHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCc--HHhcCCCcccccCcccHHHHHHHhccchHHHH
Confidence 00000001111222222233333332222221111 111122333 59999999999999999999988 78888888
Q ss_pred cccccccc-ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEe
Q 000925 988 MSSITSKW-FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1066 (1222)
Q Consensus 988 ~s~L~s~~-~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaT 1066 (1222)
.+.++... ....+..|..+|.+|++..||||||.++|.|...... .+...|+..++.... ...|..+-+
T Consensus 626 issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~--------s~~~~~~~~l~~~~~--~t~i~e~~t 695 (1080)
T KOG0732|consen 626 ISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPV--------SFLEEFLSSLDEKAL--STPILELHT 695 (1080)
T ss_pred HHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcc--------hhhhcchhcchhhhh--ccchhhhcc
Confidence 87777665 6777889999999999999999999999999643322 233344433332111 112222222
Q ss_pred cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000925 1067 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1105 (1222)
Q Consensus 1067 TN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k 1105 (1222)
-..- +..-=..+..+..|..+.+..+++..+++
T Consensus 696 ~~~~------~~~~~~~~~t~~~p~~~s~~~ff~r~I~~ 728 (1080)
T KOG0732|consen 696 WDTS------FESVNKSVVTLSKPSAESTGAFFKRLIRK 728 (1080)
T ss_pred cccc------ccccCccccccccchhhhhHHHHHHHHHH
Confidence 1111 00000124566778888888888777765
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=2e-28 Score=292.67 Aligned_cols=274 Identities=28% Similarity=0.485 Sum_probs=210.4
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc----------
Q 000925 913 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------- 982 (1222)
Q Consensus 913 ~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~---------- 982 (1222)
..+.++|++|+|++..++.+++.+.+|+.+++.|...++ .|++|+|||||||||||++|+++|++++.+
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDL-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccC-CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 344789999999999999999999999999999998884 456899999999999999999999998544
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCC
Q 000925 983 FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1058 (1222)
Q Consensus 983 fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~ 1058 (1222)
|+.+..+++.++|.|+.+..++.+|..|+.. .|+||||||+|.++..+...........++++|+..++++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~-- 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL-- 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--
Confidence 6677778899999999999999999998764 6999999999999988765444455577889999999998643
Q ss_pred CcEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhc-ccC---------CcccHHHHHHH------
Q 000925 1059 ERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE-ELA---------SDVDLEGIANM------ 1120 (1222)
Q Consensus 1059 ~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~-~l~---------sdidl~~LA~~------ 1120 (1222)
.+++||+|||+++.||++++| ||+..|+|++|+.++|.+||+.++... .+. ...++..++..
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 679999999999999999999 999999999999999999999998752 220 11112222211
Q ss_pred -----------------------cCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHH
Q 000925 1121 -----------------------ADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMD 1177 (1222)
Q Consensus 1121 -----------------------t~GySg~DL~~L~~~Aa~~airrii~~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~e 1177 (1222)
++.+||++|.++|.+|...++++.+. ...+.++++
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~----------------------~~~~~~~~~ 469 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT----------------------GGQVGLRIE 469 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh----------------------cCCcCcCHH
Confidence 23455666666666666555555431 012469999
Q ss_pred HHHHHHHHhcccccccccchhhhhHHHHhhcCCCc
Q 000925 1178 DFKYAHEQVCASVSSESTNMNELLQWNELYGEGGS 1212 (1222)
Q Consensus 1178 DF~~Alekv~pS~s~e~~~~~~~v~W~DigGl~~~ 1212 (1222)
|+..|+..-..-. .+..+-.--..|..|-|..+-
T Consensus 470 ~l~~a~~~e~~~~-~~~~~~~~~~~w~~~~~~~~~ 503 (512)
T TIGR03689 470 HLLAAVLDEFRES-EDLPNTTNPDDWARISGKKGE 503 (512)
T ss_pred HHHHHHHHhhccc-ccCCCCCCHHHHhhhhCCCCC
Confidence 9999988643221 122222223569999887653
No 33
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.9e-28 Score=300.98 Aligned_cols=244 Identities=39% Similarity=0.598 Sum_probs=213.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000925 914 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 914 e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 993 (1222)
+..++|+|++|++++++.+.+.+.. +..++.|...+. .+++++||+||||||||+||+++|.+++.+|+.++++++..
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 3467999999999999999998765 788888887774 45689999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 994 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
.+.|.....++.+|..|+...|+||||||||.+...+.. .+.+.....++++|+..++++.. +.+++||++||+++
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~ 332 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVD 332 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchH
Confidence 888888889999999999999999999999999866543 22344456778889999988754 36899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000925 1072 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1149 (1222)
Q Consensus 1072 ~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~ 1149 (1222)
.+|++++| ||++.+.+++|+.++|.+||+.++.+..+..+.++..+|..+.||+++||.++|++|+..+.++-
T Consensus 333 ~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~----- 407 (638)
T CHL00176 333 ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK----- 407 (638)
T ss_pred hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 99999998 99999999999999999999999998777788999999999999999999999999988766541
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000925 1150 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1187 (1222)
Q Consensus 1150 ~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~ 1187 (1222)
...|+++||..|++++.
T Consensus 408 ---------------------~~~It~~dl~~Ai~rv~ 424 (638)
T CHL00176 408 ---------------------KATITMKEIDTAIDRVI 424 (638)
T ss_pred ---------------------CCCcCHHHHHHHHHHHH
Confidence 13588999999988873
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-28 Score=306.32 Aligned_cols=349 Identities=28% Similarity=0.391 Sum_probs=265.8
Q ss_pred hhccchhhHHHHHhhhCCCCcccchhhhccccCCCHHHHHHHHhhhhhhhhccccCCCCC-CCccccccCchhhhHHHHH
Q 000925 801 LKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQ 879 (1222)
Q Consensus 801 ~~gR~~Il~IhT~l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~-~~kl~id~~sI~~~~~df~ 879 (1222)
...+..+.++|++.|. ..+...+..+.+|.+..+...+..+......+.+..++. ..++..+.........+++
T Consensus 176 ~~~s~~~~~~~p~~~~-----~~~r~~~~s~~~~~~~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~t~~~~~~~~~~~~~ 250 (1080)
T KOG0732|consen 176 INDSDSRDHVPPGGRQ-----LTKRGQVQSRLHMHKSSGDTERSRSLRIESWSSGKNLQSLFDKLNTKGLQTAGLRVQKE 250 (1080)
T ss_pred cccccchhccCCCCch-----hhhhhhhcccccccccccchhhhhhhhhhhcccccccchhhhhhhcCccccchhhcccc
Confidence 4456667777766554 455667777778888888877777776665555554443 2333222222221111110
Q ss_pred hhhhhhhhhhhhhccccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccce
Q 000925 880 GIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGIL 959 (1222)
Q Consensus 880 ~a~~eik~~~~slk~lv~~~e~~~~ll~~vIp~~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gIL 959 (1222)
. ..-....+..+.|++|||++.++++|++.|..|+.+|+.|...++. ||+|+|
T Consensus 251 ----------~----------------d~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it-pPrgvL 303 (1080)
T KOG0732|consen 251 ----------A----------------DSDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT-PPRGVL 303 (1080)
T ss_pred ----------c----------------ccCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccC-CCccee
Confidence 0 0011123346899999999999999999999999999999998865 569999
Q ss_pred EECCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc
Q 000925 960 LFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG 1034 (1222)
Q Consensus 960 L~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~ 1034 (1222)
++||||||||..|+++|..+ ...|+.-..++..++|+|+.+..++.+|++|++.+|+|||+||||-|.+.|....
T Consensus 304 ~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq 383 (1080)
T KOG0732|consen 304 FHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ 383 (1080)
T ss_pred ecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH
Confidence 99999999999999999887 4667777889999999999999999999999999999999999999988886544
Q ss_pred hHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcc-cCCc
Q 000925 1035 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEE-LASD 1111 (1222)
Q Consensus 1035 ~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~-l~sd 1111 (1222)
++ ....+..+|+..|+|+... +.|+||+|||+++.++++++| ||++.+++++|+.+.|.+|+.....+.. ....
T Consensus 384 Eq-ih~SIvSTLLaLmdGldsR--gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~ 460 (1080)
T KOG0732|consen 384 EQ-IHASIVSTLLALMDGLDSR--GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISR 460 (1080)
T ss_pred HH-hhhhHHHHHHHhccCCCCC--CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCH
Confidence 33 3457889999999999755 889999999999999999999 9999999999999999999998876633 2244
Q ss_pred ccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccc
Q 000925 1112 VDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1191 (1222)
Q Consensus 1112 idl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s 1191 (1222)
.-+..||..+.||-|+||+.||.+|+..++++-....-. +..+. .-......|...||..|+.+..|+..
T Consensus 461 ~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~------s~~kl----~~d~~~ikV~~~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 461 ELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS------SSDKL----LIDVALIKVEVRDFVEAMSRITPSSR 530 (1080)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec------ccccc----cccchhhhhhhHhhhhhhhccCCCCC
Confidence 557899999999999999999999999998873211100 00000 01122334889999999999988887
Q ss_pred ccc
Q 000925 1192 SES 1194 (1222)
Q Consensus 1192 ~e~ 1194 (1222)
...
T Consensus 531 R~~ 533 (1080)
T KOG0732|consen 531 RSS 533 (1080)
T ss_pred ccc
Confidence 643
No 35
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.3e-29 Score=271.79 Aligned_cols=243 Identities=35% Similarity=0.667 Sum_probs=216.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 995 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 995 (1222)
..+|++++|.-.+..++++.+..|+..|++|.+.++ +||.+++||||||+|||.+|+++|..++++|+.+..+.+.++|
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 569999999999999999999999999999999884 5779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc--hHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCC
Q 000925 996 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1073 (1222)
Q Consensus 996 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L 1073 (1222)
.|++.+.|++.|..|+.+.|||||+||||...+++.+.+ ......+.+.+|+.+|+++.. ..+|-+|+|||+|+.|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCcccc
Confidence 999999999999999999999999999999988875432 223344566677778888754 3789999999999999
Q ss_pred cHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000925 1074 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1151 (1222)
Q Consensus 1074 d~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~e 1151 (1222)
+++++| |+++.+.+++|+...|..|++.+.+.....-+++.+++.+..+||++.|+.+.|++|-+.++++.-
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~------ 358 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER------ 358 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh------
Confidence 999999 999999999999999999999988888878889999999999999999999999999988887521
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000925 1152 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1187 (1222)
Q Consensus 1152 ~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~ 1187 (1222)
-.+.+|||..++.++.
T Consensus 359 --------------------~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 359 --------------------DEVLHEDFMKLVRKQA 374 (388)
T ss_pred --------------------HHHhHHHHHHHHHHHH
Confidence 1256788888877653
No 36
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=1.9e-27 Score=294.52 Aligned_cols=249 Identities=39% Similarity=0.604 Sum_probs=216.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000925 914 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 914 e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 993 (1222)
....+|+++.|.+..++.+.+.+.. +..++.|...+. ..++|+||+||||||||++|+++|.+++.+|+.++++++..
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 3457899999999999999998876 556666665553 44588999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 994 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
.+.+.....++.+|..|+..+|+||||||||.+...+.. .+.+.....++++++..++++.. +..++||+|||+++
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p~ 301 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPD 301 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCChh
Confidence 899999999999999999999999999999999877643 23344556788999999998864 36899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000925 1072 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1149 (1222)
Q Consensus 1072 ~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~ 1149 (1222)
.||++++| ||++.+.|++|+.++|.+||+.++++..+..+.++..+|..+.||+++||.++|++|+..++++
T Consensus 302 ~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~------ 375 (644)
T PRK10733 302 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------ 375 (644)
T ss_pred hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999998 9999999999999999999999999988888999999999999999999999999999887764
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccc
Q 000925 1150 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1192 (1222)
Q Consensus 1150 ~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~ 1192 (1222)
....++++||.+|+.++.+....
T Consensus 376 --------------------~~~~i~~~d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 376 --------------------NKRVVSMVEFEKAKDKIMMGAER 398 (644)
T ss_pred --------------------CCCcccHHHHHHHHHHHhccccc
Confidence 12358899999999888765543
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.94 E-value=1.5e-26 Score=296.22 Aligned_cols=189 Identities=20% Similarity=0.284 Sum_probs=155.7
Q ss_pred hcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccccc-------------------------------
Q 000925 947 CKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW------------------------------- 995 (1222)
Q Consensus 947 ~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~------------------------------- 995 (1222)
.+.| ..||+||||+||||||||+||+|+|.++++||+.++++++...+
T Consensus 1623 lrLG-l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1623 LRLA-LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHcC-CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 3444 46789999999999999999999999999999999999887543
Q ss_pred ----------ccchHH--HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcc-cCCCcEE
Q 000925 996 ----------FGEGEK--YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDKERVL 1062 (1222)
Q Consensus 996 ----------~G~se~--~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~-k~~~~Vl 1062 (1222)
.+.++. .++.+|+.|++.+||||||||||.+..... ....+.+|+..|++... ....+|+
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VI 1774 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNIL 1774 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEE
Confidence 111222 388899999999999999999999964421 11236788888887642 2346899
Q ss_pred EEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHh--hcccCC-cccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000925 1063 VLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILA--KEELAS-DVDLEGIANMADGYSGSDLKNLCVTAA 1137 (1222)
Q Consensus 1063 VIaTTN~p~~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~--k~~l~s-didl~~LA~~t~GySg~DL~~L~~~Aa 1137 (1222)
||||||+|+.||+|++| ||++.|.|+.|+..+|.+++..++. +..+.. .+++..+|..|.||+|+||.+||++|+
T Consensus 1775 VIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAa 1854 (2281)
T CHL00206 1775 VIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEAL 1854 (2281)
T ss_pred EEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999887643 333433 357999999999999999999999999
Q ss_pred hhhhHH
Q 000925 1138 HCPIRE 1143 (1222)
Q Consensus 1138 ~~airr 1143 (1222)
..++++
T Consensus 1855 liAirq 1860 (2281)
T CHL00206 1855 SISITQ 1860 (2281)
T ss_pred HHHHHc
Confidence 998886
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-26 Score=267.36 Aligned_cols=262 Identities=26% Similarity=0.437 Sum_probs=217.7
Q ss_pred CCccc--ccCcHHHHHH-HHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC-cEEEEeccccc
Q 000925 917 VTFDD--IGALENVKDT-LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSIT 992 (1222)
Q Consensus 917 vtfdd--I~Gle~ik~~-L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~-~fi~v~~s~L~ 992 (1222)
-.|++ |||++.--.. .+++....+--|++..+.|+. .-+|||||||||||||.+||.|.+-+++ +--.+|+++++
T Consensus 216 f~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~-HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL 294 (744)
T KOG0741|consen 216 FNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK-HVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL 294 (744)
T ss_pred CChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc-ceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH
Confidence 45666 8999876544 466666667778888888854 4589999999999999999999999964 44567899999
Q ss_pred cccccchHHHHHHHHHHHHhc--------CCcEEEEccchhhhcCCCCCch-HHHHHHHHHhHhhhccCCcccCCCcEEE
Q 000925 993 SKWFGEGEKYVKAVFSLASKI--------APSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLV 1063 (1222)
Q Consensus 993 s~~~G~se~~I~~lF~~A~k~--------~PsILfIDEID~L~~~r~~~~~-~e~l~~il~~Ll~~ldgl~~k~~~~VlV 1063 (1222)
++|+|++|.+++.+|..|... .--||++||||.++.+|++... ......+.++|+.-+||...- .+++|
T Consensus 295 ~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNILV 372 (744)
T KOG0741|consen 295 NKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNILV 372 (744)
T ss_pred HHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEEE
Confidence 999999999999999998532 1249999999999998877544 557788999999999998654 68999
Q ss_pred EEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhc----ccCCcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000925 1064 LAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTAA 1137 (1222)
Q Consensus 1064 IaTTN~p~~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~----~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa 1137 (1222)
|+-||+.+.+|++++| ||...+++.+||..-|.+|++.+.+++ .+..++|+++||.+|..|||++|..|++.|.
T Consensus 373 IGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~ 452 (744)
T KOG0741|consen 373 IGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQ 452 (744)
T ss_pred EeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999988774 3568999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccc
Q 000925 1138 HCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1192 (1222)
Q Consensus 1138 ~~airrii~~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~ 1192 (1222)
..|+-|.+...-. ........+...|+++||.+|++.++|++-.
T Consensus 453 S~A~nR~vk~~~~-----------~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~ 496 (744)
T KOG0741|consen 453 SFAMNRHVKAGGK-----------VEVDPVAIENLKVTRGDFLNALEDVKPAFGI 496 (744)
T ss_pred HHHHHhhhccCcc-----------eecCchhhhheeecHHHHHHHHHhcCcccCC
Confidence 9999887643311 0111223345679999999999999999854
No 39
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.2e-26 Score=256.11 Aligned_cols=232 Identities=24% Similarity=0.285 Sum_probs=188.3
Q ss_pred ccccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEec
Q 000925 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1222)
Q Consensus 448 ~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~ 527 (1222)
.-+|||+..... |....-|.++.-.+|+|+++..-. .+ ...+.|||+|||| +.+++||||.|++-+|.++=+=.
T Consensus 145 ~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PElF~~~-GI-~PPKGVLLYGPPG--TGKTLLAkAVA~~T~AtFIrvvg 218 (406)
T COG1222 145 KPDVTYEDIGGL--DEQIQEIREVVELPLKNPELFEEL-GI-DPPKGVLLYGPPG--TGKTLLAKAVANQTDATFIRVVG 218 (406)
T ss_pred CCCCChhhccCH--HHHHHHHHHHhcccccCHHHHHHc-CC-CCCCceEeeCCCC--CcHHHHHHHHHhccCceEEEecc
Confidence 457899999999 889999999999999999985311 23 3457899999999 89999999999999999998766
Q ss_pred CCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCee-eeeeccCCCccccCCCCCCCccccceeeec
Q 000925 528 LLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV-KFVGNVTSGTTVQPTLRGPGIGFRGRVILP 606 (1222)
Q Consensus 528 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v-~~~g~~~~~~~~~~~~~~~~~g~rg~v~~~ 606 (1222)
|.| | ||+|...
T Consensus 219 SEl---------------------------------------------VqKYiGEGa----------------------- 230 (406)
T COG1222 219 SEL---------------------------------------------VQKYIGEGA----------------------- 230 (406)
T ss_pred HHH---------------------------------------------HHHHhccch-----------------------
Confidence 655 3 8888311
Q ss_pred cccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcchhh
Q 000925 607 FEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEK 686 (1222)
Q Consensus 607 ~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~die~ 686 (1222)
+++.+||+++.+ +.|+|||||+||.
T Consensus 231 ----------------------------------------------------RlVRelF~lAre---kaPsIIFiDEIDA 255 (406)
T COG1222 231 ----------------------------------------------------RLVRELFELARE---KAPSIIFIDEIDA 255 (406)
T ss_pred ----------------------------------------------------HHHHHHHHHHhh---cCCeEEEEechhh
Confidence 289999999999 9999999999999
Q ss_pred hhc--------cChhhHHHHHHHHhcC-----CCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCccc
Q 000925 687 SLT--------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSR 753 (1222)
Q Consensus 687 ~l~--------~~~~~~~~l~~~L~~l-----~g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~~ 753 (1222)
+=+ +..|.-..+...|..| .++|-||+++|++|- |||
T Consensus 256 Ig~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~----------------------LDP-------- 305 (406)
T COG1222 256 IGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI----------------------LDP-------- 305 (406)
T ss_pred hhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc----------------------cCh--------
Confidence 433 2334333344444444 359999999997665 555
Q ss_pred cccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHH-hhhCCCCcccchhhhcc
Q 000925 754 LHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIK 830 (1222)
Q Consensus 754 ~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~-l~~~~l~~~dLe~La~~ 830 (1222)
|||| ||+|.+||+|||+.||.+||+|||+ |.- -+++|++.||..
T Consensus 306 -------------------------------ALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l--~~dvd~e~la~~ 352 (406)
T COG1222 306 -------------------------------ALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL--ADDVDLELLARL 352 (406)
T ss_pred -------------------------------hhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC--ccCcCHHHHHHh
Confidence 9999 9999999999999999999999987 532 268999999999
Q ss_pred ccCCCHHHHHHHHhhhhhhhhccccCCCCCCCccccccCchhhhHHHHHhhhhhhh
Q 000925 831 DQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESK 886 (1222)
Q Consensus 831 tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~~eik 886 (1222)
|.|++||||+++|++|--+|+.... ..+...||+.+..++.
T Consensus 353 ~~g~sGAdlkaictEAGm~AiR~~R---------------~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 353 TEGFSGADLKAICTEAGMFAIRERR---------------DEVTMEDFLKAVEKVV 393 (406)
T ss_pred cCCCchHHHHHHHHHHhHHHHHhcc---------------CeecHHHHHHHHHHHH
Confidence 9999999999999999999987322 2356788888776654
No 40
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=2.9e-24 Score=244.01 Aligned_cols=188 Identities=20% Similarity=0.257 Sum_probs=153.6
Q ss_pred CCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhc-----CCcEEEEccchhh
Q 000925 952 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSM 1026 (1222)
Q Consensus 952 ~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~-----~PsILfIDEID~L 1026 (1222)
.++|.+++||||||||||++|++||+++|++|+.++.++|.++|+|++|+.++++|..|... +||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 46789999999999999999999999999999999999999999999999999999999754 6999999999999
Q ss_pred hcCCCCCchHHHHHHH-HHhHhhhccCCc----------ccCCCcEEEEEecCCCCCCcHHHHh--cccccccCCCCCHH
Q 000925 1027 LGRRENPGEHEAMRKM-KNEFMVNWDGLR----------TKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAP 1093 (1222)
Q Consensus 1027 ~~~r~~~~~~e~l~~i-l~~Ll~~ldgl~----------~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~I~lPd~e 1093 (1222)
++++... ......++ ..+|+..+|+.. .....+|+||+|||+++.|+++++| ||++.+ .+|+.+
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 9888642 23333444 478888887631 1235789999999999999999999 999754 589999
Q ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHcCC----CcHHHHHHHHHHHHhhhhHH
Q 000925 1094 NREKIIRVILAKEELASDVDLEGIANMADG----YSGSDLKNLCVTAAHCPIRE 1143 (1222)
Q Consensus 1094 eR~eILk~lL~k~~l~sdidl~~LA~~t~G----ySg~DL~~L~~~Aa~~airr 1143 (1222)
+|.+||+.++++..+. ..++..|+..+.| |.|+--..+..++....+.+
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999987765 6788888888876 44544444555544444443
No 41
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-25 Score=252.28 Aligned_cols=259 Identities=19% Similarity=0.260 Sum_probs=209.4
Q ss_pred HHHhccccCCCccccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHh
Q 000925 437 DSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAK 516 (1222)
Q Consensus 437 ~~l~~~vv~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~ 516 (1222)
+.|.+-|+. ++.+|.||+.-.. ++.|.+|-+|+..++..++|++ .|...++.|||.|||| ..++|||||+|.
T Consensus 196 e~lerdIl~-~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F~---GirrPWkgvLm~GPPG--TGKTlLAKAvAT 267 (491)
T KOG0738|consen 196 EALERDILQ-RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFFK---GIRRPWKGVLMVGPPG--TGKTLLAKAVAT 267 (491)
T ss_pred HHHHHHHhc-cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHHh---hcccccceeeeeCCCC--CcHHHHHHHHHH
Confidence 334444443 4667999999999 9999999999999999999866 5788999999999999 899999999999
Q ss_pred hcCCeEEEEecCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCC
Q 000925 517 HFSARLLIVDSLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPG 596 (1222)
Q Consensus 517 ~f~a~lL~~D~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~ 596 (1222)
++|..+..|-|+.|. +||-|.+.
T Consensus 268 Ec~tTFFNVSsstlt--------------------------------------------SKwRGeSE------------- 290 (491)
T KOG0738|consen 268 ECGTTFFNVSSSTLT--------------------------------------------SKWRGESE------------- 290 (491)
T ss_pred hhcCeEEEechhhhh--------------------------------------------hhhccchH-------------
Confidence 999999999988872 26666322
Q ss_pred ccccceeeeccccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCC
Q 000925 597 IGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSP 676 (1222)
Q Consensus 597 ~g~rg~v~~~~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P 676 (1222)
-++..||+++.- ..|
T Consensus 291 --------------------------------------------------------------KlvRlLFemARf---yAP 305 (491)
T KOG0738|consen 291 --------------------------------------------------------------KLVRLLFEMARF---YAP 305 (491)
T ss_pred --------------------------------------------------------------HHHHHHHHHHHH---hCC
Confidence 288999999988 899
Q ss_pred eEEEEcchhhhhcc---------ChhhHHHHHHHHhcCCC---C---EEEEEeccCCCCccccCCCCCceeeccCcchhh
Q 000925 677 LIVFVKDIEKSLTG---------NNDAYGALKSKLENLPS---N---VVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTA 741 (1222)
Q Consensus 677 ~Ilfi~die~~l~~---------~~~~~~~l~~~L~~l~g---~---vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~ 741 (1222)
.+||||+||.+-.+ +.++.+-|--.++.+.+ + |.|++++|
T Consensus 306 StIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN------------------------- 360 (491)
T KOG0738|consen 306 STIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN------------------------- 360 (491)
T ss_pred ceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccC-------------------------
Confidence 99999999994431 34444444444555533 4 89999999
Q ss_pred hccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhcchhhhccchhhHHHHHhhhCCC-C
Q 000925 742 LLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGL-D 820 (1222)
Q Consensus 742 l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~ 820 (1222)
+||++|+ ||||||+..+|++|||.++|..+++|- |+...+ +
T Consensus 361 -----~PWdiDE-------------------------------AlrRRlEKRIyIPLP~~~~R~~Li~~~--l~~~~~~~ 402 (491)
T KOG0738|consen 361 -----FPWDIDE-------------------------------ALRRRLEKRIYIPLPDAEARSALIKIL--LRSVELDD 402 (491)
T ss_pred -----CCcchHH-------------------------------HHHHHHhhheeeeCCCHHHHHHHHHHh--hccccCCC
Confidence 8999986 999999999999999999999999996 777766 8
Q ss_pred cccchhhhccccCCCHHHHHHHHhhhhhhhhccccCCCCCCCccccccCchh--hhHHHHHhhhhhhhhh
Q 000925 821 CVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIM--YGLNILQGIQSESKSL 888 (1222)
Q Consensus 821 ~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~--~~~~df~~a~~eik~~ 888 (1222)
+++++.|+..+.||+|+||..+|+.|.-+++.|+..-........+..+.+. +...||+.++..+.+.
T Consensus 403 ~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pS 472 (491)
T KOG0738|consen 403 PVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPS 472 (491)
T ss_pred CccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcC
Confidence 8899999999999999999999999999999987654333333444455555 6778888887766553
No 42
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3e-25 Score=249.72 Aligned_cols=233 Identities=21% Similarity=0.338 Sum_probs=198.1
Q ss_pred HHHHHHhccccCCCccccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHH
Q 000925 434 AFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKA 513 (1222)
Q Consensus 434 ~~~~~l~~~vv~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakA 513 (1222)
-|+.-+...||.+++|.|+|++.... |.+|+.|.+..-..|+++++++++ +|...++.|||.|||| ..++|||||
T Consensus 72 e~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~~g-~Ll~p~kGiLL~GPpG--~GKTmlAKA 146 (386)
T KOG0737|consen 72 EYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFAKG-KLLRPPKGILLYGPPG--TGKTMLAKA 146 (386)
T ss_pred HHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhccc-ccccCCccceecCCCC--chHHHHHHH
Confidence 47778899999999999999999999 999999999999999999998754 7777999999999999 999999999
Q ss_pred HHhhcCCeEEEEecCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCC
Q 000925 514 LAKHFSARLLIVDSLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLR 593 (1222)
Q Consensus 514 LA~~f~a~lL~~D~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~ 593 (1222)
+|++-||.+..|+.+.+. .||+|..++
T Consensus 147 ~Akeaga~fInv~~s~lt--------------------------------------------~KWfgE~eK--------- 173 (386)
T KOG0737|consen 147 IAKEAGANFINVSVSNLT--------------------------------------------SKWFGEAQK--------- 173 (386)
T ss_pred HHHHcCCCcceeeccccc--------------------------------------------hhhHHHHHH---------
Confidence 999999999999998872 277774333
Q ss_pred CCCccccceeeeccccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccC
Q 000925 594 GPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESK 673 (1222)
Q Consensus 594 ~~~~g~rg~v~~~~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk 673 (1222)
++.++|-++. |
T Consensus 174 ------------------------------------------------------------------lv~AvFslAs---K 184 (386)
T KOG0737|consen 174 ------------------------------------------------------------------LVKAVFSLAS---K 184 (386)
T ss_pred ------------------------------------------------------------------HHHHHHhhhh---h
Confidence 7788898887 5
Q ss_pred CCCeEEEEcchhhhhcc----Chh----hHHHHHHHHhcC----CCCEEEEEeccCCCCccccCCCCCceeeccCcchhh
Q 000925 674 SSPLIVFVKDIEKSLTG----NND----AYGALKSKLENL----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTA 741 (1222)
Q Consensus 674 ~~P~Ilfi~die~~l~~----~~~----~~~~l~~~L~~l----~g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~ 741 (1222)
.+|.|||||+||.+|.. .-| ..+-|...|+.| ...|+|+|++|
T Consensus 185 l~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN------------------------- 239 (386)
T KOG0737|consen 185 LQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN------------------------- 239 (386)
T ss_pred cCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC-------------------------
Confidence 99999999999998862 111 223344456666 34799999999
Q ss_pred hccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhcchhhhccchhhHHHHHhhhCCC-C
Q 000925 742 LLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGL-D 820 (1222)
Q Consensus 742 l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~ 820 (1222)
+|.++| +|.+||+.+.|.+++|+...|..||++- +..-.+ +
T Consensus 240 -----RP~DlD-------------------------------eAiiRR~p~rf~V~lP~~~qR~kILkvi--Lk~e~~e~ 281 (386)
T KOG0737|consen 240 -----RPFDLD-------------------------------EAIIRRLPRRFHVGLPDAEQRRKILKVI--LKKEKLED 281 (386)
T ss_pred -----CCccHH-------------------------------HHHHHhCcceeeeCCCchhhHHHHHHHH--hcccccCc
Confidence 455555 4999999999999999999999999985 666677 8
Q ss_pred cccchhhhccccCCCHHHHHHHHhhhhhhhhccccC
Q 000925 821 CVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSE 856 (1222)
Q Consensus 821 ~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~ 856 (1222)
++|+.++|..|+||+|.||..+|+.|+...++....
T Consensus 282 ~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 282 DVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred ccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 899999999999999999999999999988765443
No 43
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.5e-22 Score=241.69 Aligned_cols=249 Identities=23% Similarity=0.321 Sum_probs=199.4
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1035 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1035 (1222)
..+||+|+||||||++++++|.++|.+++.++|.++.....+..+..+..+|..|++..|+||||-++|.+...+.. +.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-ge 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-GE 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-ch
Confidence 35999999999999999999999999999999999999988999999999999999999999999999998644433 22
Q ss_pred HHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCCcccHH
Q 000925 1036 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 1115 (1222)
Q Consensus 1036 ~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~ 1115 (1222)
...+...++.++. ++ .......+++||++|+..+.+++.+++.|.+.|.++.|+.++|.+||+.++....+..++.+.
T Consensus 511 d~rl~~~i~~~ls-~e-~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 511 DARLLKVIRHLLS-NE-DFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred hHHHHHHHHHHHh-cc-cccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 2233344444443 12 222245789999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccc
Q 000925 1116 GIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERAL-ALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 1194 (1222)
Q Consensus 1116 ~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~e~~~-~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~e~ 1194 (1222)
.+|..|.||+.+||..++..+-..+..++.++. ..... ...++.+ ......++++||.+|+.+++..++..+
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~-l~g~~~~~~~~~~------~~~~~~l~~edf~kals~~~~~fs~ai 661 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKG-LAGGLQEEDEGEL------CAAGFLLTEEDFDKALSRLQKEFSDAI 661 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhc-ccccchhcccccc------ccccceecHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999998887433333332211 00000 0011111 123367999999999999999999888
Q ss_pred cchh-hhhHHHHhhcCCCccc
Q 000925 1195 TNMN-ELLQWNELYGEGGSRK 1214 (1222)
Q Consensus 1195 ~~~~-~~v~W~DigGl~~~Rk 1214 (1222)
.+.+ |+|.|+||||++.+|+
T Consensus 662 GAPKIPnV~WdDVGGLeevK~ 682 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKT 682 (953)
T ss_pred CCCCCCccchhcccCHHHHHH
Confidence 8765 9999999999999875
No 44
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1e-21 Score=232.65 Aligned_cols=261 Identities=21% Similarity=0.283 Sum_probs=207.5
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh----CCcEEEEecccccccc
Q 000925 920 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKW 995 (1222)
Q Consensus 920 ddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~v~~s~L~s~~ 995 (1222)
.+++-...++++..+....| +.++ .+|||+||+|+|||.|++++++++ -+++..++|+.+....
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~-~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~ 475 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRH-GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS 475 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------cccc-ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh
Confidence 35666667777666544332 1222 579999999999999999999998 4678889999998888
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC-chHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCc
Q 000925 996 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP-GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1074 (1222)
Q Consensus 996 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~-~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1074 (1222)
+....+.+..+|..|.+++|+||++|++|.|++...+. +........+..+++++-....+.+..+.|||+.+....++
T Consensus 476 ~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 476 LEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 88888899999999999999999999999999743332 22233344455555544444445667789999999999999
Q ss_pred HHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000925 1075 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1151 (1222)
Q Consensus 1075 ~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~e 1151 (1222)
+.+.+ +|+.++.++.|+..+|.+||+.++++.... ...|++.++..|+||...||..++.+|.+.++++.+..
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~---- 631 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN---- 631 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc----
Confidence 99888 899999999999999999999999885422 34456669999999999999999999999888543211
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhh-hHHHHhhcCCCccc
Q 000925 1152 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNEL-LQWNELYGEGGSRK 1214 (1222)
Q Consensus 1152 ~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~e~~~~~~~-v~W~DigGl~~~Rk 1214 (1222)
.. ..+|.+||.++++.+.|...+....-.+. ..|+||||+...|+
T Consensus 632 -----------------~~-klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 632 -----------------GP-KLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKK 677 (952)
T ss_pred -----------------Cc-ccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHH
Confidence 11 15999999999999999999998877755 99999999988775
No 45
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.86 E-value=6.2e-20 Score=231.29 Aligned_cols=201 Identities=21% Similarity=0.275 Sum_probs=131.1
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCC---CCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccc---
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--- 994 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l---~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~--- 994 (1222)
.|.|++.+++.+.+.+.. .+.++ .+|...+||+||+|||||+||++||+.++.+++.++++++...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 578999999998887753 12222 2343458999999999999999999999999999999875431
Q ss_pred --cccchHH-----HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcc-------cCCCc
Q 000925 995 --WFGEGEK-----YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDKER 1060 (1222)
Q Consensus 995 --~~G~se~-----~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~-------k~~~~ 1060 (1222)
++|.... ....+....+..+.+||||||||.+ .+ .+.+.|+..++...- -+-.+
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----~~-------~~~~~Ll~~ld~g~~~d~~g~~vd~~~ 594 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----HP-------DIYNILLQVMDYATLTDNNGRKADFRN 594 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----CH-------HHHHHHHHhhccCeeecCCCcccCCCC
Confidence 2221111 1122344445666789999999987 22 233444444443211 11246
Q ss_pred EEEEEecCCC-------------------------CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcc--------
Q 000925 1061 VLVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-------- 1107 (1222)
Q Consensus 1061 VlVIaTTN~p-------------------------~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~-------- 1107 (1222)
++||+|||.- ..+.|.|+.||+.++.|...+.++..+|++..+.+..
T Consensus 595 ~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~ 674 (731)
T TIGR02639 595 VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNI 674 (731)
T ss_pred CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8899999752 1256788899999999999999999999999886421
Q ss_pred -cC-CcccHHHHHHHc--CCCcHHHHHHHHHHHHhhhh
Q 000925 1108 -LA-SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPI 1141 (1222)
Q Consensus 1108 -l~-sdidl~~LA~~t--~GySg~DL~~L~~~Aa~~ai 1141 (1222)
+. ++..++.|+... ..|-.+.|+.+++.-...++
T Consensus 675 ~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l 712 (731)
T TIGR02639 675 KLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPL 712 (731)
T ss_pred eEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHH
Confidence 11 233345555542 23445566665555544443
No 46
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.86 E-value=9.7e-20 Score=227.96 Aligned_cols=165 Identities=19% Similarity=0.293 Sum_probs=116.4
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCC---CCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc----
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS---- 993 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l---~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s---- 993 (1222)
.|+|++++++.|.+.+... +.++ .+|...+||+||||||||++|+++|..++.+++.++|+++..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~--------~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMS--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHH--------hccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccH
Confidence 4899999999999988642 1222 344456999999999999999999999999999999987532
Q ss_pred -ccccchHHHH----HHHH-HHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCc-c------cCCCc
Q 000925 994 -KWFGEGEKYV----KAVF-SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-T------KDKER 1060 (1222)
Q Consensus 994 -~~~G~se~~I----~~lF-~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~-~------k~~~~ 1060 (1222)
.++|....++ ...+ ...++.+.+||||||||.+- ..+.+.|+..++... . -+-.+
T Consensus 531 ~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn 598 (758)
T PRK11034 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------PDVFNLLLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_pred HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh------------HHHHHHHHHHHhcCeeecCCCceecCCC
Confidence 2333221111 1233 33355566999999999882 234444554444211 1 11257
Q ss_pred EEEEEecCCC-------------------------CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000925 1061 VLVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1105 (1222)
Q Consensus 1061 VlVIaTTN~p-------------------------~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k 1105 (1222)
++||+|||.- ..+.|+|+.|++.++.|...+.++..+|+..++.+
T Consensus 599 ~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred cEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 8899999821 23568899999999999999999999999888764
No 47
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.2e-22 Score=215.48 Aligned_cols=222 Identities=21% Similarity=0.318 Sum_probs=182.6
Q ss_pred HHHHHhccccCCCccccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHH
Q 000925 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (1222)
Q Consensus 435 ~~~~l~~~vv~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakAL 514 (1222)
++..|..+||- +.-+|-|+..-.. |..|++|-+|+..++|.+.+... =....++|||+|||| +.+-+||||+
T Consensus 115 Lr~~L~sAIv~-EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPqlFtG---kR~PwrgiLLyGPPG--TGKSYLAKAV 186 (439)
T KOG0739|consen 115 LRSALNSAIVR-EKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQLFTG---KRKPWRGILLYGPPG--TGKSYLAKAV 186 (439)
T ss_pred HHHHhhhhhhc-cCCCCchhhhccc--hhHHHHHHhheeecccchhhhcC---CCCcceeEEEeCCCC--CcHHHHHHHH
Confidence 44555555553 5678999999999 99999999999999999988543 335688999999999 8999999999
Q ss_pred HhhcCCeEEEEecCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCC
Q 000925 515 AKHFSARLLIVDSLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRG 594 (1222)
Q Consensus 515 A~~f~a~lL~~D~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~ 594 (1222)
|.+-+..+.-|.|++| ++||+|.+.
T Consensus 187 ATEAnSTFFSvSSSDL--------------------------------------------vSKWmGESE----------- 211 (439)
T KOG0739|consen 187 ATEANSTFFSVSSSDL--------------------------------------------VSKWMGESE----------- 211 (439)
T ss_pred HhhcCCceEEeehHHH--------------------------------------------HHHHhccHH-----------
Confidence 9999988888888877 348888432
Q ss_pred CCccccceeeeccccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCC
Q 000925 595 PGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKS 674 (1222)
Q Consensus 595 ~~~g~rg~v~~~~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~ 674 (1222)
-++..|||++.+ .
T Consensus 212 ----------------------------------------------------------------kLVknLFemARe---~ 224 (439)
T KOG0739|consen 212 ----------------------------------------------------------------KLVKNLFEMARE---N 224 (439)
T ss_pred ----------------------------------------------------------------HHHHHHHHHHHh---c
Confidence 288999999999 9
Q ss_pred CCeEEEEcchhhhhcc-----ChhhHHHHHHHHh-cC------CCCEEEEEeccCCCCccccCCCCCceeeccCcchhhh
Q 000925 675 SPLIVFVKDIEKSLTG-----NNDAYGALKSKLE-NL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTAL 742 (1222)
Q Consensus 675 ~P~Ilfi~die~~l~~-----~~~~~~~l~~~L~-~l------~g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l 742 (1222)
.|.|||||+||. +|+ -.+.-..|+..|. .+ ...|+|+|++|
T Consensus 225 kPSIIFiDEiDs-lcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN-------------------------- 277 (439)
T KOG0739|consen 225 KPSIIFIDEIDS-LCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN-------------------------- 277 (439)
T ss_pred CCcEEEeehhhh-hccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCC--------------------------
Confidence 999999999995 774 2334444444332 22 34999999999
Q ss_pred ccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhcchhhhccchhhHHHHHhhhCCCCcc
Q 000925 743 LDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCV 822 (1222)
Q Consensus 743 ~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~ 822 (1222)
.||.+|. |.||||++.+|++||+..+|..+++||--..-+.|...
T Consensus 278 ----iPw~LDs-------------------------------AIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~ 322 (439)
T KOG0739|consen 278 ----IPWVLDS-------------------------------AIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQ 322 (439)
T ss_pred ----CchhHHH-------------------------------HHHHHhhcceeccCCcHHHhhhhheeccCCCccccchh
Confidence 7888775 99999999999999999999999999944555678899
Q ss_pred cchhhhccccCCCHHHHHHHHhhhhh
Q 000925 823 DLESLCIKDQTLTTEGVEKIVGWALS 848 (1222)
Q Consensus 823 dLe~La~~tkg~sgadI~~Lv~~A~s 848 (1222)
|+.+|+.+|.||+|+||.-+|+.|.-
T Consensus 323 d~~eL~~kTeGySGsDisivVrDalm 348 (439)
T KOG0739|consen 323 DFKELARKTEGYSGSDISIVVRDALM 348 (439)
T ss_pred hHHHHHhhcCCCCcCceEEEehhhhh
Confidence 99999999999999999988887653
No 48
>CHL00181 cbbX CbbX; Provisional
Probab=99.81 E-value=6e-19 Score=199.53 Aligned_cols=237 Identities=16% Similarity=0.243 Sum_probs=171.0
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCC--CccceEECCCCChHHHHHHHHHHHh-------CCcEEEEecccc
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 991 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~P--p~gILL~GPpGTGKT~LArAIA~el-------g~~fi~v~~s~L 991 (1222)
+++|++++|++|.+++.+ +..++.+.+.++..+ +.++||+||||||||++|+++|+.+ ..+++.+++.++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 799999999999998876 334455555565443 3348999999999999999999876 236899999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCC-
Q 000925 992 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 1070 (1222)
Q Consensus 992 ~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p- 1070 (1222)
.+.++|..+..+..+|..|. ++||||||+|.|...+.. ......+.+.|+..++.. ..+++||++++..
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~ 172 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDR 172 (287)
T ss_pred HHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 99999988877788888764 489999999998643321 123345566666666542 2567888887542
Q ss_pred ----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHH----c--CCCc-HHHHHHHHHHHHh
Q 000925 1071 ----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANM----A--DGYS-GSDLKNLCVTAAH 1138 (1222)
Q Consensus 1071 ----~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~----t--~GyS-g~DL~~L~~~Aa~ 1138 (1222)
..+++++++||+.+|.|+.++.+++.+|++.++.+.... .+.....+... . +.|. +++++++++.|..
T Consensus 173 ~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 173 MDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 245699999999999999999999999999999875432 22223333332 1 2344 7999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHH
Q 000925 1139 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYA 1182 (1222)
Q Consensus 1139 ~airrii~~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~A 1182 (1222)
+...|++.... ...+.+++..++.+||...
T Consensus 253 ~~~~r~~~~~~--------------~~~~~~~l~~~~~~d~~~~ 282 (287)
T CHL00181 253 RQANRIFESGG--------------RVLTKADLVTIEAEDILKS 282 (287)
T ss_pred HHHHHHHcCCC--------------CCCCHHHHhCCCHHHHhHH
Confidence 87777654311 1123456778888888653
No 49
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.2e-20 Score=211.73 Aligned_cols=221 Identities=23% Similarity=0.367 Sum_probs=176.1
Q ss_pred HhccccCCCccccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhc
Q 000925 439 LQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 518 (1222)
Q Consensus 439 l~~~vv~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f 518 (1222)
|...|.+-+.++|+|++.=.- |+.|+-|-+-+- .||.+. ||++-=--+.+.|||.|||| +.++|||||+|-+-
T Consensus 289 l~~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~--kftrLGGKLPKGVLLvGPPG--TGKTlLARAvAGEA 361 (752)
T KOG0734|consen 289 LDSEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPT--KFTRLGGKLPKGVLLVGPPG--TGKTLLARAVAGEA 361 (752)
T ss_pred cccccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcH--HhhhccCcCCCceEEeCCCC--CchhHHHHHhhccc
Confidence 457788888889999999988 999999999876 677765 47754467789999999999 89999999999999
Q ss_pred CCeEEEEecCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCcc
Q 000925 519 SARLLIVDSLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIG 598 (1222)
Q Consensus 519 ~a~lL~~D~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g 598 (1222)
|+++.---.+.| |- -|||-
T Consensus 362 ~VPFF~~sGSEF-------------------------------------------dE-m~VGv----------------- 380 (752)
T KOG0734|consen 362 GVPFFYASGSEF-------------------------------------------DE-MFVGV----------------- 380 (752)
T ss_pred CCCeEeccccch-------------------------------------------hh-hhhcc-----------------
Confidence 998764443333 11 14441
Q ss_pred ccceeeeccccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeE
Q 000925 599 FRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLI 678 (1222)
Q Consensus 599 ~rg~v~~~~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~I 678 (1222)
.-.-+..||.-+.. +.|+|
T Consensus 381 ----------------------------------------------------------GArRVRdLF~aAk~---~APcI 399 (752)
T KOG0734|consen 381 ----------------------------------------------------------GARRVRDLFAAAKA---RAPCI 399 (752)
T ss_pred ----------------------------------------------------------cHHHHHHHHHHHHh---cCCeE
Confidence 01147788888888 89999
Q ss_pred EEEcchhhhhcc--C-hhh------HHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccC
Q 000925 679 VFVKDIEKSLTG--N-NDA------YGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAF 747 (1222)
Q Consensus 679 lfi~die~~l~~--~-~~~------~~~l~~~L~~l~--g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~ 747 (1222)
||||++|. +++ + .+. .+.|-..|+.+. .+|||||++| |
T Consensus 400 IFIDEiDa-vG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATN------------------------------f 448 (752)
T KOG0734|consen 400 IFIDEIDA-VGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATN------------------------------F 448 (752)
T ss_pred EEEechhh-hcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccC------------------------------C
Confidence 99999999 662 2 222 223333333332 3999999999 6
Q ss_pred CCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHHhhhCCC-Ccccc
Q 000925 748 PDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDL 824 (1222)
Q Consensus 748 pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~dL 824 (1222)
||++|. ||.| ||++|+-.++||+.||.+||+.| |..-.+ .++|+
T Consensus 449 pe~LD~-------------------------------AL~RPGRFD~~v~Vp~PDv~GR~eIL~~y--l~ki~~~~~VD~ 495 (752)
T KOG0734|consen 449 PEALDK-------------------------------ALTRPGRFDRHVTVPLPDVRGRTEILKLY--LSKIPLDEDVDP 495 (752)
T ss_pred hhhhhH-------------------------------HhcCCCccceeEecCCCCcccHHHHHHHH--HhcCCcccCCCH
Confidence 666665 9999 99999999999999999999999 666666 68999
Q ss_pred hhhhccccCCCHHHHHHHHhhhhhhhhc
Q 000925 825 ESLCIKDQTLTTEGVEKIVGWALSHHFM 852 (1222)
Q Consensus 825 e~La~~tkg~sgadI~~Lv~~A~s~Al~ 852 (1222)
.-||.-|.||+||||+.+|+.|+.+|-.
T Consensus 496 ~iiARGT~GFsGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 496 KIIARGTPGFSGADLANLVNQAALKAAV 523 (752)
T ss_pred hHhccCCCCCchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999866
No 50
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.79 E-value=1.6e-18 Score=195.91 Aligned_cols=237 Identities=16% Similarity=0.216 Sum_probs=172.0
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCC--CCccceEECCCCChHHHHHHHHHHHhC-------CcEEEEecccc
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISMSSI 991 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~--Pp~gILL~GPpGTGKT~LArAIA~elg-------~~fi~v~~s~L 991 (1222)
+++|++++|++|.+++.+ +..++.+.+.++.. |..++||+||||||||++|+++|+.+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998876 54555665555533 445799999999999999999988762 37999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCC-
Q 000925 992 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 1070 (1222)
Q Consensus 992 ~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p- 1070 (1222)
.+.++|..+..+..+|..|.. +||||||++.|...+.. ......+.+.|+..++.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 888999888888888888754 89999999998643321 122334555666666532 2567888887542
Q ss_pred -C---CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc------C-CCcHHHHHHHHHHHHh
Q 000925 1071 -F---DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA------D-GYSGSDLKNLCVTAAH 1138 (1222)
Q Consensus 1071 -~---~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t------~-GySg~DL~~L~~~Aa~ 1138 (1222)
+ .+++++.+||+..|.|+.++.+++..|++.++.+.... ++..+..++... + --++++++++++.|..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 35799999999999999999999999999999885432 223344444431 1 1357999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHH
Q 000925 1139 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYA 1182 (1222)
Q Consensus 1139 ~airrii~~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~A 1182 (1222)
+...|+..... ......++..++.+|+..+
T Consensus 252 ~~~~r~~~~~~--------------~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 252 RQANRLFCDLD--------------RVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHhcCcC--------------CCCCHHHHhCCCHHHHhhc
Confidence 77777643211 0123356678888888654
No 51
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=2.2e-18 Score=192.31 Aligned_cols=216 Identities=15% Similarity=0.223 Sum_probs=155.9
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCC--CccceEECCCCChHHHHHHHHHHHh-------CCcEEEEecc
Q 000925 919 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMS 989 (1222)
Q Consensus 919 fddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~P--p~gILL~GPpGTGKT~LArAIA~el-------g~~fi~v~~s 989 (1222)
+++++|++++|+.|++++.++...... .+.++..+ ..++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~-~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKR-KEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHH-HHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 568999999999999988775443222 22333322 2468999999999999999999875 3478899999
Q ss_pred ccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCC
Q 000925 990 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1069 (1222)
Q Consensus 990 ~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~ 1069 (1222)
++.+.++|+.+..++.+|..|. ++||||||+|.|.... ........++.++..++.. ..++++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~----~~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG----EKDFGKEAIDTLVKGMEDN----RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC----ccchHHHHHHHHHHHHhcc----CCCEEEEecCCc
Confidence 9999999999888999998775 4899999999985211 1112234566666666543 245666666543
Q ss_pred C-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc-------C--CCcHHHHHHHHH
Q 000925 1070 P-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA-------D--GYSGSDLKNLCV 1134 (1222)
Q Consensus 1070 p-----~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t-------~--GySg~DL~~L~~ 1134 (1222)
. ..+++++++||+..+.++.++.+++.+|++.++...... ++..+..|+... . .-+++.+.++++
T Consensus 153 ~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 153 DEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred chhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 2 246789999998889999999999999999999875432 333344443321 1 235788889999
Q ss_pred HHHhhhhHHHHH
Q 000925 1135 TAAHCPIREILE 1146 (1222)
Q Consensus 1135 ~Aa~~airrii~ 1146 (1222)
.|..+...+++.
T Consensus 233 ~a~~~~~~r~~~ 244 (261)
T TIGR02881 233 KAIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHHhc
Confidence 888777666553
No 52
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.1e-18 Score=192.82 Aligned_cols=197 Identities=28% Similarity=0.388 Sum_probs=156.3
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh-------
Q 000925 907 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------- 979 (1222)
Q Consensus 907 ~~vIp~~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el------- 979 (1222)
.+.+|..+-.--|+.++--..+|+.|..++...+...+.-....+..-.+-||||||||||||+|++|+|+.+
T Consensus 129 ~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~ 208 (423)
T KOG0744|consen 129 HWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDR 208 (423)
T ss_pred heeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCc
Confidence 3455655545567888888899999999987766554433333333333448999999999999999999998
Q ss_pred --CCcEEEEeccccccccccchHHHHHHHHHHHHhcC---C--cEEEEccchhhhcCCCC---CchHHHHHHHHHhHhhh
Q 000925 980 --GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA---P--SVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVN 1049 (1222)
Q Consensus 980 --g~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~---P--sILfIDEID~L~~~r~~---~~~~e~l~~il~~Ll~~ 1049 (1222)
...++++++..++++||+++.+.+..+|......- . -.++|||++.|...|.+ ..+....-++.+.++++
T Consensus 209 y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQ 288 (423)
T KOG0744|consen 209 YYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQ 288 (423)
T ss_pred cccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH
Confidence 34679999999999999999999999998775432 2 35678999999866522 12223344788999999
Q ss_pred ccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000925 1050 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1105 (1222)
Q Consensus 1050 ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k 1105 (1222)
+|.+.. ..+|++++|+|-.+.+|.+|..|-+.+.++..|+...|.+|++..+.+
T Consensus 289 lDrlK~--~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 289 LDRLKR--YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred HHHhcc--CCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 999864 478999999999999999999999999999999999999999998876
No 53
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=8.8e-18 Score=189.61 Aligned_cols=208 Identities=25% Similarity=0.437 Sum_probs=163.5
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 996 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~ 996 (1222)
..|++++-...+...|+.+...--. .+. -.-|-++||+|||||||||++|+.||...|..|-.+.+.++.- .-
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaN-----TK~-h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG 424 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATAN-----TKK-HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LG 424 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcc-----ccc-ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cc
Confidence 3477888778888888776542111 111 1235578999999999999999999999999998888777542 22
Q ss_pred cchHHHHHHHHHHHHhcCCc-EEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcH
Q 000925 997 GEGEKYVKAVFSLASKIAPS-VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1075 (1222)
Q Consensus 997 G~se~~I~~lF~~A~k~~Ps-ILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1075 (1222)
.+.-..|.++|..|++...+ +|||||.|.++..|......+..+..+|.|+..--. ....++++.+||+|.++|.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----cccceEEEeccCCccchhH
Confidence 23456799999999988765 789999999998888777788889999999865322 2367888899999999999
Q ss_pred HHHhcccccccCCCCCHHHHHHHHHHHHhhccc---------------------------CCcccHHHHHHHcCCCcHHH
Q 000925 1076 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL---------------------------ASDVDLEGIANMADGYSGSD 1128 (1222)
Q Consensus 1076 aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l---------------------------~sdidl~~LA~~t~GySg~D 1128 (1222)
++-.||+.+++|++|..++|.+|+..|+.+.-+ ..+..+.+.|..|+||||++
T Consensus 501 AV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 501 AVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred HHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 999999999999999999999999999876321 11122577899999999999
Q ss_pred HHHHHHH
Q 000925 1129 LKNLCVT 1135 (1222)
Q Consensus 1129 L~~L~~~ 1135 (1222)
|..|+.-
T Consensus 581 iakLva~ 587 (630)
T KOG0742|consen 581 IAKLVAS 587 (630)
T ss_pred HHHHHHH
Confidence 9988654
No 54
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.76 E-value=3.3e-18 Score=168.55 Aligned_cols=130 Identities=38% Similarity=0.644 Sum_probs=113.7
Q ss_pred ceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcC-CcEEEEccchhhhcCCCCCchH
Q 000925 958 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEH 1036 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~ 1036 (1222)
|||+||||||||++|+.+|+.++.+++.+++.++.+.+.+..++.+..+|..+.... |+||||||+|.+++.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 699999999999999999999999999999999998889999999999999999888 9999999999998776 33345
Q ss_pred HHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHH-hcccccccCCC
Q 000925 1037 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVV-RRLPRRLMVNL 1089 (1222)
Q Consensus 1037 e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLl-rRF~~~I~I~l 1089 (1222)
.....+++.++..++..... ..+++||+|||.++.+++.++ +||+.++.+++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 55667788888888876543 367999999999999999999 99998887763
No 55
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.75 E-value=2e-16 Score=201.89 Aligned_cols=166 Identities=22% Similarity=0.274 Sum_probs=113.0
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCC---CCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000925 920 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 993 (1222)
Q Consensus 920 ddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l---~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s 993 (1222)
+.|+|++.+.+.+...+... +.++ .+|...+||+||+|+|||+||+++|+.+ +.+++.++++++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 35899999999998877531 1222 3343458999999999999999999987 46899999877532
Q ss_pred c-----cccchHHH-----HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCc-------cc
Q 000925 994 K-----WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 1056 (1222)
Q Consensus 994 ~-----~~G~se~~-----I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~-------~k 1056 (1222)
. ++|....+ ...+....++.+.+||+|||||.+ . ..+.+.|+..++... .-
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----~-------~~v~~~Llq~le~g~~~d~~g~~v 648 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----H-------PDIFNLLLQILDDGRLTDSKGRTI 648 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----C-------HHHHHHHHHHhccCceecCCCcEE
Confidence 1 22211111 123445555666699999999987 2 223444444444321 11
Q ss_pred CCCcEEEEEecCCCC-------------------------------------CCcHHHHhcccccccCCCCCHHHHHHHH
Q 000925 1057 DKERVLVLAATNRPF-------------------------------------DLDEAVVRRLPRRLMVNLPDAPNREKII 1099 (1222)
Q Consensus 1057 ~~~~VlVIaTTN~p~-------------------------------------~Ld~aLlrRF~~~I~I~lPd~eeR~eIL 1099 (1222)
+-.+.+||+|||... .+.|+|+.|++.++.|.+.+.++..+|+
T Consensus 649 ~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 649 DFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred ecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHH
Confidence 235789999987421 0235778899999999999999999999
Q ss_pred HHHHhh
Q 000925 1100 RVILAK 1105 (1222)
Q Consensus 1100 k~lL~k 1105 (1222)
+..+.+
T Consensus 729 ~~~l~~ 734 (821)
T CHL00095 729 EIMLKN 734 (821)
T ss_pred HHHHHH
Confidence 888765
No 56
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.75 E-value=3.9e-18 Score=204.73 Aligned_cols=248 Identities=20% Similarity=0.252 Sum_probs=180.9
Q ss_pred HHHHHHHHHHhccccCCCccccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHH
Q 000925 430 ARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQET 509 (1222)
Q Consensus 430 ~~~~~~~~~l~~~vv~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~ 509 (1222)
.++|.+++. ++++-...+++|++...+ ++.|..|....-.+.. ....|+ + +..+.|||+|||| ..+.+
T Consensus 207 ~k~q~~~~~---~~le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~--~~~~~g--l-~~pkGILL~GPpG--TGKTl 274 (489)
T CHL00195 207 EKKQIISQT---EILEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSK--QASNYG--L-PTPRGLLLVGIQG--TGKSL 274 (489)
T ss_pred HHHHHHhhh---ccccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhH--HHHhcC--C-CCCceEEEECCCC--CcHHH
Confidence 344444432 466666778999999998 9999888764322111 122333 3 4568999999999 89999
Q ss_pred HHHHHHhhcCCeEEEEecCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCcccc
Q 000925 510 LAKALAKHFSARLLIVDSLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQ 589 (1222)
Q Consensus 510 LakALA~~f~a~lL~~D~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~ 589 (1222)
||||+|++++++|+.+|...|.+ +|+|.+
T Consensus 275 lAkaiA~e~~~~~~~l~~~~l~~--------------------------------------------~~vGes------- 303 (489)
T CHL00195 275 TAKAIANDWQLPLLRLDVGKLFG--------------------------------------------GIVGES------- 303 (489)
T ss_pred HHHHHHHHhCCCEEEEEhHHhcc--------------------------------------------cccChH-------
Confidence 99999999999999999876632 344521
Q ss_pred CCCCCCCccccceeeeccccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHh
Q 000925 590 PTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVAL 669 (1222)
Q Consensus 590 ~~~~~~~~g~rg~v~~~~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~ 669 (1222)
...+..+|+.+.
T Consensus 304 --------------------------------------------------------------------e~~l~~~f~~A~ 315 (489)
T CHL00195 304 --------------------------------------------------------------------ESRMRQMIRIAE 315 (489)
T ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Confidence 115677788776
Q ss_pred hccCCCCeEEEEcchhhhhcc---------ChhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCCCCCceeeccCcchh
Q 000925 670 NESKSSPLIVFVKDIEKSLTG---------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQT 740 (1222)
Q Consensus 670 ~esk~~P~Ilfi~die~~l~~---------~~~~~~~l~~~L~~l~g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~ 740 (1222)
. .+|+||||||+|+++.+ ..+....|-..|+....+|+|||++|+++.
T Consensus 316 ~---~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~-------------------- 372 (489)
T CHL00195 316 A---LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDL-------------------- 372 (489)
T ss_pred h---cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhh--------------------
Confidence 6 79999999999997763 123444444445555679999999995444
Q ss_pred hhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHHhhhC-
Q 000925 741 ALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRN- 817 (1222)
Q Consensus 741 ~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~- 817 (1222)
||+ |++| ||++.+++++|+...|.+|+++|.....+
T Consensus 373 --Ld~---------------------------------------allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~ 411 (489)
T CHL00195 373 --LPL---------------------------------------EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK 411 (489)
T ss_pred --CCH---------------------------------------HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC
Confidence 332 8888 99999999999999999999999663332
Q ss_pred CCCcccchhhhccccCCCHHHHHHHHhhhhhhhhccccCCCCCCCccccccCchhhhHHHHHhhhhhhhhh
Q 000925 818 GLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSL 888 (1222)
Q Consensus 818 ~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~~eik~~ 888 (1222)
...+.+++.||..|.||+|+||+.+|.+|...|+.... .+...+|..+...+.|+
T Consensus 412 ~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~----------------~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 412 SWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR----------------EFTTDDILLALKQFIPL 466 (489)
T ss_pred cccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC----------------CcCHHHHHHHHHhcCCC
Confidence 34688999999999999999999999999988865211 13456676666555554
No 57
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.75 E-value=5e-16 Score=197.94 Aligned_cols=200 Identities=22% Similarity=0.271 Sum_probs=127.3
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCC--Ccc-ceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccc
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKG-ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 994 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~P--p~g-ILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~ 994 (1222)
.++|++.+.+.+.+.+... +.++..| |.+ +||+||+|+|||+||+++|..+ ...++.++++++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred eEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 5889999998888877631 2233322 333 8999999999999999999998 457899998765321
Q ss_pred ------------cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCc-c------
Q 000925 995 ------------WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-T------ 1055 (1222)
Q Consensus 995 ------------~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~-~------ 1055 (1222)
|+|..+. ..+....++.+.+||+|||||.. .+ .+.+.|+..++... .
T Consensus 639 ~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----~~-------~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----HP-------DVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred hhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----CH-------HHHHHHHHHhhcceeecCCCcE
Confidence 3332211 11334445667799999999976 21 22333333333221 0
Q ss_pred cCCCcEEEEEecCCCC-----------------------------CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhc
Q 000925 1056 KDKERVLVLAATNRPF-----------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE 1106 (1222)
Q Consensus 1056 k~~~~VlVIaTTN~p~-----------------------------~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~ 1106 (1222)
-+-.+.+||+|||... .+.++|+.|++ +|.|...+.++..+|+...+...
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l 783 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRI 783 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHH
Confidence 0125689999988410 25577888996 88999999999999998877552
Q ss_pred --------cc---CCcccHHHHHHHcCC--CcHHHHHHHHHHHHhhhhHH
Q 000925 1107 --------EL---ASDVDLEGIANMADG--YSGSDLKNLCVTAAHCPIRE 1143 (1222)
Q Consensus 1107 --------~l---~sdidl~~LA~~t~G--ySg~DL~~L~~~Aa~~airr 1143 (1222)
++ .++..++.|+....+ |-.+.|.++++.-...++.+
T Consensus 784 ~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 784 ARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 11 123335556665532 44566766666655544443
No 58
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.73 E-value=3.6e-16 Score=199.70 Aligned_cols=166 Identities=22% Similarity=0.346 Sum_probs=109.0
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCC---CCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000925 920 DDIGALENVKDTLKELVMLPLQRPELFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 993 (1222)
Q Consensus 920 ddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~---~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s 993 (1222)
..++|++.+.+.+...+... +.++. +|...+||+||+|||||++|++||..+ +.+++.++|+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 45889999988888877631 22222 232458999999999999999999887 56799999977543
Q ss_pred c-----cccchHHH----HHHHHHHH-HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCc-------cc
Q 000925 994 K-----WFGEGEKY----VKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 1056 (1222)
Q Consensus 994 ~-----~~G~se~~----I~~lF~~A-~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~-------~k 1056 (1222)
. .+|....+ -...+..+ +..+.+|||||||+.+ ++. +.+.|+..++... ..
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----~~~-------v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----HPD-------VFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----CHH-------HHHHHHHHHhhCceecCCceEE
Confidence 2 12211100 01223333 3444589999999977 212 2233333332110 01
Q ss_pred CCCcEEEEEecCCC-------------------------CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000925 1057 DKERVLVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1105 (1222)
Q Consensus 1057 ~~~~VlVIaTTN~p-------------------------~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k 1105 (1222)
.-.+.+||+|||.. ..+.++|+.|++.++.+.+++.++..+|++.++.+
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 12456789999862 13457889999999999999999999999888865
No 59
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6e-18 Score=206.91 Aligned_cols=218 Identities=23% Similarity=0.322 Sum_probs=176.2
Q ss_pred CCccccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEE
Q 000925 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1222)
Q Consensus 446 ~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~ 525 (1222)
-.+++|+|+++-.- |+.|.-|.+-+- .||+++. |.+-=.-.-+.+||+|||| +.++.||||+|-+-|++++-+
T Consensus 303 ~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~~--Y~~lGAKiPkGvLL~GPPG--TGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPEQ--YQELGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred CCCCCCccccccCc--HHHHHHHHHHHH-HhcCHHH--HHHcCCcCcCceEEECCCC--CcHHHHHHHHhcccCCceeee
Confidence 67888999999999 999999999876 7999876 6543366778999999999 899999999999999999988
Q ss_pred ecCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccceeee
Q 000925 526 DSLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVIL 605 (1222)
Q Consensus 526 D~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~v~~ 605 (1222)
-.+.|-- .|+|-..
T Consensus 376 SGSEFvE--------------------------------------------~~~g~~a---------------------- 389 (774)
T KOG0731|consen 376 SGSEFVE--------------------------------------------MFVGVGA---------------------- 389 (774)
T ss_pred chHHHHH--------------------------------------------Hhcccch----------------------
Confidence 8777721 1333100
Q ss_pred ccccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcchh
Q 000925 606 PFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIE 685 (1222)
Q Consensus 606 ~~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~die 685 (1222)
-.++.||..+.. ..|+||||||+|
T Consensus 390 -----------------------------------------------------srvr~lf~~ar~---~aP~iifideid 413 (774)
T KOG0731|consen 390 -----------------------------------------------------SRVRDLFPLARK---NAPSIIFIDEID 413 (774)
T ss_pred -----------------------------------------------------HHHHHHHHHhhc---cCCeEEEecccc
Confidence 057889998888 899999999999
Q ss_pred hhhc----------cC---hhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCC
Q 000925 686 KSLT----------GN---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 750 (1222)
Q Consensus 686 ~~l~----------~~---~~~~~~l~~~L~~l~--g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~ 750 (1222)
. ++ +| .+.++.+--.++.+. +.||||+++|++|- +|+
T Consensus 414 a-~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~----------------------ld~----- 465 (774)
T KOG0731|consen 414 A-VGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI----------------------LDP----- 465 (774)
T ss_pred c-ccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc----------------------cCH-----
Confidence 8 44 22 344555555555553 48999999996554 443
Q ss_pred ccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHHhhhCCCCcccchhhh
Q 000925 751 FSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLC 828 (1222)
Q Consensus 751 ~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~dLe~La 828 (1222)
|||| ||+|++.+++||+++|.+|+++|-.-..-..+++++..||
T Consensus 466 ----------------------------------allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a 511 (774)
T KOG0731|consen 466 ----------------------------------ALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLA 511 (774)
T ss_pred ----------------------------------HhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHH
Confidence 9999 9999999999999999999999955222224888999999
Q ss_pred ccccCCCHHHHHHHHhhhhhhhhccc
Q 000925 829 IKDQTLTTEGVEKIVGWALSHHFMHC 854 (1222)
Q Consensus 829 ~~tkg~sgadI~~Lv~~A~s~Al~r~ 854 (1222)
.+|.||+||||..+|++|+..|..+.
T Consensus 512 ~~t~gf~gadl~n~~neaa~~a~r~~ 537 (774)
T KOG0731|consen 512 SLTPGFSGADLANLCNEAALLAARKG 537 (774)
T ss_pred hcCCCCcHHHHHhhhhHHHHHHHHhc
Confidence 99999999999999999999998743
No 60
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7e-17 Score=195.58 Aligned_cols=249 Identities=37% Similarity=0.540 Sum_probs=216.7
Q ss_pred ccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcE
Q 000925 938 LPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSV 1017 (1222)
Q Consensus 938 ~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsI 1017 (1222)
+|+..++.|...+ ..++.+++++||||+|||.++++++.. +..+..++.+...+++.+..+...+.+|..+....|++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i 79 (494)
T COG0464 2 LPLKEPELFKKLG-IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSI 79 (494)
T ss_pred CCccCHHHHHHhC-CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCe
Confidence 3566777777776 456699999999999999999999999 77678888999999999999999999999999999999
Q ss_pred EEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHH
Q 000925 1018 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNR 1095 (1222)
Q Consensus 1018 LfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~I~lPd~eeR 1095 (1222)
+++||+|.+.+.+.. ........+..+++..++++. ... +++++.+|.+..+++++++ ||+..+.+..|+...|
T Consensus 80 i~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (494)
T COG0464 80 IFIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGR 155 (494)
T ss_pred EeechhhhcccCccc-cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHH
Confidence 999999999988766 555667788999999999987 445 9999999999999999999 9999999999999999
Q ss_pred HHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCcccccccc
Q 000925 1096 EKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLK 1175 (1222)
Q Consensus 1096 ~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt 1175 (1222)
.+|+...........+.++..++..+.||.++++..+|..+...++++.+ ........++
T Consensus 156 ~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~--------------------~~~~~~~~~~ 215 (494)
T COG0464 156 LEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI--------------------DLVGEYIGVT 215 (494)
T ss_pred HHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh--------------------ccCccccccc
Confidence 99999988877777788999999999999999999999999988888753 0111234689
Q ss_pred HHHHHHHHHHhcccccccccchhhhhHHHHhhcCCCccc
Q 000925 1176 MDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1214 (1222)
Q Consensus 1176 ~eDF~~Alekv~pS~s~e~~~~~~~v~W~DigGl~~~Rk 1214 (1222)
.+||..+++++.++ .+.....+.+.|.|+||++..|.
T Consensus 216 ~~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~ 252 (494)
T COG0464 216 EDDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKE 252 (494)
T ss_pred HHHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHH
Confidence 99999999999998 66667789999999999887764
No 61
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.72 E-value=1.8e-15 Score=193.76 Aligned_cols=204 Identities=22% Similarity=0.324 Sum_probs=130.7
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCC---CCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000925 920 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 993 (1222)
Q Consensus 920 ddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l---~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s 993 (1222)
..+.|++.+.+.+.+.+... ..++ .+|...+||+||+|||||++|++||..+ +.+++.++|+++..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 45889999998888877631 1222 2344559999999999999999999987 57899999977533
Q ss_pred c-----cccchHHH-----HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCc-------cc
Q 000925 994 K-----WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 1056 (1222)
Q Consensus 994 ~-----~~G~se~~-----I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~-------~k 1056 (1222)
. ++|....+ ...+....++.+.+||||||||.+ ++ .+.+.|+..++... .-
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----~~-------~v~~~Ll~~l~~g~l~d~~g~~v 704 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----HP-------DVFNVLLQVLDDGRLTDGQGRTV 704 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----CH-------HHHHHHHHHHhcCceecCCCeEE
Confidence 2 12211110 112333445555689999999977 21 22333333332211 01
Q ss_pred CCCcEEEEEecCCCC-------------------------CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhc-----
Q 000925 1057 DKERVLVLAATNRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----- 1106 (1222)
Q Consensus 1057 ~~~~VlVIaTTN~p~-------------------------~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~----- 1106 (1222)
+-.+.+||+|||... .+.+.|+.|++.++.+.+++.++..+|+...+...
T Consensus 705 d~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 705 DFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred ecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 125678999998621 13467777999999999999999999998877631
Q ss_pred --cc---CCcccHHHHHHHcC--CCcHHHHHHHHHHHHhhhhHH
Q 000925 1107 --EL---ASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIRE 1143 (1222)
Q Consensus 1107 --~l---~sdidl~~LA~~t~--GySg~DL~~L~~~Aa~~airr 1143 (1222)
.+ .++..++.|+...- .+..+.|+++++.....++.+
T Consensus 785 ~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 785 ERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred HCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 11 12333555665422 456678888777777665554
No 62
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.4e-17 Score=193.92 Aligned_cols=212 Identities=20% Similarity=0.281 Sum_probs=171.4
Q ss_pred cccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEecC
Q 000925 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1222)
Q Consensus 449 ~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~~ 528 (1222)
-+|-|+.||.. +..|..|.+++...+-.++... +|.+.-+.|||.||+| ...+||+||+|-+.+|.+.-+-.+
T Consensus 148 ~~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F~---glr~p~rglLLfGPpg--tGKtmL~~aiAsE~~atff~iSas 220 (428)
T KOG0740|consen 148 RNVGWDDIAGL--EDAKQSLKEAVILPLLRPDLFL---GLREPVRGLLLFGPPG--TGKTMLAKAIATESGATFFNISAS 220 (428)
T ss_pred CcccccCCcch--hhHHHHhhhhhhhcccchHhhh---ccccccchhheecCCC--CchHHHHHHHHhhhcceEeeccHH
Confidence 35889999999 9999999999999999988843 7999999999999999 899999999999999999888777
Q ss_pred CCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccceeeeccc
Q 000925 529 LLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFE 608 (1222)
Q Consensus 529 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~v~~~~e 608 (1222)
.|.+ ||+|..++
T Consensus 221 sLts--------------------------------------------K~~Ge~eK------------------------ 232 (428)
T KOG0740|consen 221 SLTS--------------------------------------------KYVGESEK------------------------ 232 (428)
T ss_pred Hhhh--------------------------------------------hccChHHH------------------------
Confidence 7733 78774221
Q ss_pred cCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcchhhhh
Q 000925 609 DNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSL 688 (1222)
Q Consensus 609 ~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~die~~l 688 (1222)
++.+||+|+.. .||.|+||+|||.+|
T Consensus 233 ---------------------------------------------------~vralf~vAr~---~qPsvifidEidsll 258 (428)
T KOG0740|consen 233 ---------------------------------------------------LVRALFKVARS---LQPSVIFIDEIDSLL 258 (428)
T ss_pred ---------------------------------------------------HHHHHHHHHHh---cCCeEEEechhHHHH
Confidence 88999999999 999999999999999
Q ss_pred cc--------ChhhHHHHHHHHhc----CCCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCcccccc
Q 000925 689 TG--------NNDAYGALKSKLEN----LPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHD 756 (1222)
Q Consensus 689 ~~--------~~~~~~~l~~~L~~----l~g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~~~~~ 756 (1222)
+. +.+....|.-.+.. -..+|+|||++| +||.+|+
T Consensus 259 s~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN------------------------------~P~e~De--- 305 (428)
T KOG0740|consen 259 SKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN------------------------------RPWELDE--- 305 (428)
T ss_pred hhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCC------------------------------CchHHHH---
Confidence 83 22222222222222 245999999999 5666664
Q ss_pred ccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhcchhhhccchhhHHHHHhhh--CCCCcccchhhhccccCC
Q 000925 757 RSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSR--NGLDCVDLESLCIKDQTL 834 (1222)
Q Consensus 757 ~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~IhT~l~~--~~l~~~dLe~La~~tkg~ 834 (1222)
|.+|||-+-+|+++||...|..|++= .|.+ +.+.+.+++.|+..|.||
T Consensus 306 ----------------------------a~~Rrf~kr~yiplPd~etr~~~~~~--ll~~~~~~l~~~d~~~l~~~Tegy 355 (428)
T KOG0740|consen 306 ----------------------------AARRRFVKRLYIPLPDYETRSLLWKQ--LLKEQPNGLSDLDISLLAKVTEGY 355 (428)
T ss_pred ----------------------------HHHHHhhceeeecCCCHHHHHHHHHH--HHHhCCCCccHHHHHHHHHHhcCc
Confidence 88889999999999998888776643 2333 456888999999999999
Q ss_pred CHHHHHHHHhhhhhhhhc
Q 000925 835 TTEGVEKIVGWALSHHFM 852 (1222)
Q Consensus 835 sgadI~~Lv~~A~s~Al~ 852 (1222)
+|.||..+|.+|+..-+.
T Consensus 356 sgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 356 SGSDITALCKEAAMGPLR 373 (428)
T ss_pred ccccHHHHHHHhhcCchh
Confidence 999999999999876554
No 63
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2e-17 Score=177.27 Aligned_cols=211 Identities=21% Similarity=0.285 Sum_probs=167.4
Q ss_pred HHHhhhhcccccccccccCCC-CCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEecCCCCCCCCCCCcccccccC
Q 000925 468 LIASTYVHLKCNNFAKYASDL-PTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPGHRKPTSSVEADITG 546 (1222)
Q Consensus 468 L~~~~~~hL~~~~~~k~~~~l-~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~~~~~~~~~~~s~~~~~~~~ 546 (1222)
.-+..-.+.||+++++ .| -.-.+.+||+||+| .....||+|.|||-+++|+-+..+.|
T Consensus 159 IkEVIeLPvKHPELF~---aLGIaQPKGvlLygppg--tGktLlaraVahht~c~firvsgsel---------------- 217 (404)
T KOG0728|consen 159 IKEVIELPVKHPELFE---ALGIAQPKGVLLYGPPG--TGKTLLARAVAHHTDCTFIRVSGSEL---------------- 217 (404)
T ss_pred HHHHHhccccCHHHHH---hcCCCCCcceEEecCCC--CchhHHHHHHHhhcceEEEEechHHH----------------
Confidence 3455567889999954 34 33457899999999 89999999999999999987765554
Q ss_pred CcccCCCCCCCCCccccCCCcccccCCCee-eeeeccCCCccccCCCCCCCccccceeeeccccCCCCCceeeecCCCCC
Q 000925 547 GTAVGSQALPKPEISTASSKNYTFKKGDRV-KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPE 625 (1222)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v-~~~g~~~~~~~~~~~~~~~~~g~rg~v~~~~e~n~~~kv~v~fd~~~~~ 625 (1222)
| ||+|..
T Consensus 218 -----------------------------vqk~igeg------------------------------------------- 225 (404)
T KOG0728|consen 218 -----------------------------VQKYIGEG------------------------------------------- 225 (404)
T ss_pred -----------------------------HHHHhhhh-------------------------------------------
Confidence 2 788831
Q ss_pred CCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcchhhhhc---------cChhhHH
Q 000925 626 GNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT---------GNNDAYG 696 (1222)
Q Consensus 626 ~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~die~~l~---------~~~~~~~ 696 (1222)
-+.+.+||=++.+ +.|.|||+|+||. ++ +..+.-.
T Consensus 226 --------------------------------srmvrelfvmare---hapsiifmdeids-igs~r~e~~~ggdsevqr 269 (404)
T KOG0728|consen 226 --------------------------------SRMVRELFVMARE---HAPSIIFMDEIDS-IGSSRVESGSGGDSEVQR 269 (404)
T ss_pred --------------------------------HHHHHHHHHHHHh---cCCceEeeecccc-cccccccCCCCccHHHHH
Confidence 1278999999999 9999999999999 44 2455555
Q ss_pred HHHHHHhcCCC-----CEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhh
Q 000925 697 ALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRL 771 (1222)
Q Consensus 697 ~l~~~L~~l~g-----~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~l 771 (1222)
..-..|..|.| ++-||.++|+.|- +||
T Consensus 270 tmlellnqldgfeatknikvimatnridi----------------------ld~-------------------------- 301 (404)
T KOG0728|consen 270 TMLELLNQLDGFEATKNIKVIMATNRIDI----------------------LDP-------------------------- 301 (404)
T ss_pred HHHHHHHhccccccccceEEEEecccccc----------------------ccH--------------------------
Confidence 55566666665 9999999998664 454
Q ss_pred CCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHH-hhhCCCCcccchhhhccccCCCHHHHHHHHhhhhh
Q 000925 772 FPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALS 848 (1222)
Q Consensus 772 f~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~-l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s 848 (1222)
|||| |.+|.+||+-|+.++|.+||+||.+ |. -.-..+|..+|++..|-+||++.++|++|--
T Consensus 302 -------------allrpgridrkiefp~p~e~ar~~ilkihsrkmn--l~rgi~l~kiaekm~gasgaevk~vcteagm 366 (404)
T KOG0728|consen 302 -------------ALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN--LTRGINLRKIAEKMPGASGAEVKGVCTEAGM 366 (404)
T ss_pred -------------hhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc--hhcccCHHHHHHhCCCCccchhhhhhhhhhH
Confidence 9999 9999999999999999999999987 32 1256789999999999999999999999999
Q ss_pred hhhccccCCCCCCCccccccCchhhhHHHHHhhhhhh
Q 000925 849 HHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSES 885 (1222)
Q Consensus 849 ~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~~ei 885 (1222)
||+.. +.+-++..||+.+..++
T Consensus 367 ~alre---------------rrvhvtqedfemav~kv 388 (404)
T KOG0728|consen 367 YALRE---------------RRVHVTQEDFEMAVAKV 388 (404)
T ss_pred HHHHH---------------hhccccHHHHHHHHHHH
Confidence 99863 23445667777765443
No 64
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=9.3e-18 Score=183.10 Aligned_cols=227 Identities=22% Similarity=0.287 Sum_probs=180.2
Q ss_pred cccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEecCCC
Q 000925 451 VSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (1222)
Q Consensus 451 vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~~~~ 530 (1222)
.||.+.... |+.-+-+-+++-.+|.|++| |-.-=-...+.+.|+|+|| ..+..||||.|+.-.|.+|=+=.+.|
T Consensus 182 Ety~diGGl--e~QiQEiKEsvELPLthPE~--YeemGikpPKGVIlyG~PG--TGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 182 ETYADIGGL--ESQIQEIKESVELPLTHPEY--YEEMGIKPPKGVILYGEPG--TGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred hhhcccccH--HHHHHHHHHhhcCCCCCHHH--HHHcCCCCCCeeEEeCCCC--CchhHHHHHHhcccchhhhhhhhHHH
Confidence 468888888 88889999999999999999 5442244567888999999 89999999999998888775544333
Q ss_pred CCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccceeeeccccC
Q 000925 531 PGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDN 610 (1222)
Q Consensus 531 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~v~~~~e~n 610 (1222)
- -||.|..
T Consensus 256 i--------------------------------------------QkylGdG---------------------------- 263 (440)
T KOG0726|consen 256 I--------------------------------------------QKYLGDG---------------------------- 263 (440)
T ss_pred H--------------------------------------------HHHhccc----------------------------
Confidence 0 1555510
Q ss_pred CCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcchhhhhc-
Q 000925 611 DFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT- 689 (1222)
Q Consensus 611 ~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~die~~l~- 689 (1222)
-.++.+||.|+.+ +.|.|+|||+||. ++
T Consensus 264 -----------------------------------------------pklvRqlF~vA~e---~apSIvFiDEIdA-iGt 292 (440)
T KOG0726|consen 264 -----------------------------------------------PKLVRELFRVAEE---HAPSIVFIDEIDA-IGT 292 (440)
T ss_pred -----------------------------------------------hHHHHHHHHHHHh---cCCceEEeehhhh-hcc
Confidence 1289999999999 9999999999999 54
Q ss_pred --------cChhhHHHHHHHHhcCC-----CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCcccccc
Q 000925 690 --------GNNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHD 756 (1222)
Q Consensus 690 --------~~~~~~~~l~~~L~~l~-----g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~~~~~ 756 (1222)
+..++-..+-..|+.|. |-|-||.++|+.++ +||
T Consensus 293 KRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~----------------------LDP----------- 339 (440)
T KOG0726|consen 293 KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET----------------------LDP----------- 339 (440)
T ss_pred ccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc----------------------cCH-----------
Confidence 23555555555666664 58999999998776 565
Q ss_pred ccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHH-hhhCCCCcccchhhhccccC
Q 000925 757 RSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQT 833 (1222)
Q Consensus 757 ~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~-l~~~~l~~~dLe~La~~tkg 833 (1222)
||+| |.+|.++|++||++.++.|++|||- |.- -.+++|++|.....-
T Consensus 340 ----------------------------aLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl--~~dVnle~li~~kdd 389 (440)
T KOG0726|consen 340 ----------------------------ALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTL--AEDVNLEELIMTKDD 389 (440)
T ss_pred ----------------------------hhcCCCccccccccCCCchhhhceeEEEeecccch--hccccHHHHhhcccc
Confidence 9999 9999999999999999999999985 431 178999999999999
Q ss_pred CCHHHHHHHHhhhhhhhhccccCCCCCCCccccccCchhhhHHHHHhhhhh
Q 000925 834 LTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSE 884 (1222)
Q Consensus 834 ~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~~e 884 (1222)
++||||.++|++|-..|++. +.+.++..||+.+...
T Consensus 390 lSGAdIkAictEaGllAlRe---------------rRm~vt~~DF~ka~e~ 425 (440)
T KOG0726|consen 390 LSGADIKAICTEAGLLALRE---------------RRMKVTMEDFKKAKEK 425 (440)
T ss_pred cccccHHHHHHHHhHHHHHH---------------HHhhccHHHHHHHHHH
Confidence 99999999999999999873 2345677888766543
No 65
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.70 E-value=3.2e-17 Score=192.90 Aligned_cols=215 Identities=22% Similarity=0.350 Sum_probs=165.8
Q ss_pred CccccccccccccchhHHHHHHHHhhhhcccccccc-cccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEE
Q 000925 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1222)
Q Consensus 447 ~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~-k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~ 525 (1222)
+.-+|+|+++..+ |..|..|..+.-..|+++++. +++ + ...+.|||+||+| ..+++||||+|++.++.++.+
T Consensus 138 ~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~G--l-~~pkgvLL~GppG--TGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 138 EKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQIG--I-DPPRGVLLYGPPG--TGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhcC--C-CCCceEEEECCCC--CCHHHHHHHHHHhcCCCEEEE
Confidence 4678999999999 999999999999999998874 332 3 3467899999999 899999999999998887766
Q ss_pred ecCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccceeee
Q 000925 526 DSLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVIL 605 (1222)
Q Consensus 526 D~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~v~~ 605 (1222)
..+.|. .+|+|.
T Consensus 211 ~~s~l~--------------------------------------------~k~~ge------------------------ 222 (398)
T PTZ00454 211 VGSEFV--------------------------------------------QKYLGE------------------------ 222 (398)
T ss_pred ehHHHH--------------------------------------------HHhcch------------------------
Confidence 543331 123331
Q ss_pred ccccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcchh
Q 000925 606 PFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIE 685 (1222)
Q Consensus 606 ~~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~die 685 (1222)
....+..+|+.+.. .+|.||||||+|
T Consensus 223 ---------------------------------------------------~~~~lr~lf~~A~~---~~P~ILfIDEID 248 (398)
T PTZ00454 223 ---------------------------------------------------GPRMVRDVFRLARE---NAPSIIFIDEVD 248 (398)
T ss_pred ---------------------------------------------------hHHHHHHHHHHHHh---cCCeEEEEECHh
Confidence 11256677887766 899999999999
Q ss_pred hhhccC--------hhh---HHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCcc
Q 000925 686 KSLTGN--------NDA---YGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFS 752 (1222)
Q Consensus 686 ~~l~~~--------~~~---~~~l~~~L~~l~--g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~ 752 (1222)
.++... .+. ...|-..++.+. .+|+||++++++|. +|+
T Consensus 249 ~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~----------------------LDp------- 299 (398)
T PTZ00454 249 SIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT----------------------LDP------- 299 (398)
T ss_pred hhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh----------------------CCH-------
Confidence 965421 122 222333344432 48999999995444 333
Q ss_pred ccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHHhhhCCC-Ccccchhhhc
Q 000925 753 RLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCI 829 (1222)
Q Consensus 753 ~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~dLe~La~ 829 (1222)
|++| ||++++++++|+...|..|+++|+. ..++ .+++++.++.
T Consensus 300 --------------------------------AllR~GRfd~~I~~~~P~~~~R~~Il~~~~~--~~~l~~dvd~~~la~ 345 (398)
T PTZ00454 300 --------------------------------ALLRPGRLDRKIEFPLPDRRQKRLIFQTITS--KMNLSEEVDLEDFVS 345 (398)
T ss_pred --------------------------------HHcCCCcccEEEEeCCcCHHHHHHHHHHHHh--cCCCCcccCHHHHHH
Confidence 8888 9999999999999999999999975 3344 6789999999
Q ss_pred cccCCCHHHHHHHHhhhhhhhhcc
Q 000925 830 KDQTLTTEGVEKIVGWALSHHFMH 853 (1222)
Q Consensus 830 ~tkg~sgadI~~Lv~~A~s~Al~r 853 (1222)
.|.||+|+||+.+|++|...|+.+
T Consensus 346 ~t~g~sgaDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 346 RPEKISAADIAAICQEAGMQAVRK 369 (398)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999864
No 66
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.70 E-value=4.9e-17 Score=191.42 Aligned_cols=234 Identities=23% Similarity=0.291 Sum_probs=175.3
Q ss_pred CccccccccccccchhHHHHHHHHhhhhcccccccc-cccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEE
Q 000925 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1222)
Q Consensus 447 ~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~-k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~ 525 (1222)
+..+++|+++.++ |..+.-|..+....++++++. +++ + ...+.|||+|||| ..+++||||+|++.++.++.+
T Consensus 124 ~~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g--~-~~p~gvLL~GppG--tGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 124 ESPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEVG--I-EPPKGVLLYGPPG--TGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcC--C-CCCCceEEECCCC--CChHHHHHHHHHHhCCCEEEe
Confidence 4557999999999 999999999998899998764 332 2 3346899999999 899999999999999998888
Q ss_pred ecCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccceeee
Q 000925 526 DSLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVIL 605 (1222)
Q Consensus 526 D~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~v~~ 605 (1222)
+.+.|.. +|+|.
T Consensus 197 ~~~~l~~--------------------------------------------~~~g~------------------------ 208 (389)
T PRK03992 197 VGSELVQ--------------------------------------------KFIGE------------------------ 208 (389)
T ss_pred ehHHHhH--------------------------------------------hhccc------------------------
Confidence 7665521 23331
Q ss_pred ccccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcchh
Q 000925 606 PFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIE 685 (1222)
Q Consensus 606 ~~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~die 685 (1222)
....+..+|+.+.. ..|.||||||+|
T Consensus 209 ---------------------------------------------------~~~~i~~~f~~a~~---~~p~IlfiDEiD 234 (389)
T PRK03992 209 ---------------------------------------------------GARLVRELFELARE---KAPSIIFIDEID 234 (389)
T ss_pred ---------------------------------------------------hHHHHHHHHHHHHh---cCCeEEEEechh
Confidence 01156678887766 789999999999
Q ss_pred hhhcc--------ChhhHHHHHHHHhcCC-----CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCcc
Q 000925 686 KSLTG--------NNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFS 752 (1222)
Q Consensus 686 ~~l~~--------~~~~~~~l~~~L~~l~-----g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~ 752 (1222)
.++.. ..+.-..+...|..+. ++|+|||+++++|. +|
T Consensus 235 ~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~----------------------ld-------- 284 (389)
T PRK03992 235 AIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI----------------------LD-------- 284 (389)
T ss_pred hhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh----------------------CC--------
Confidence 96542 1222223333333332 48999999995333 22
Q ss_pred ccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHHhhhCCC-Ccccchhhhc
Q 000925 753 RLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCI 829 (1222)
Q Consensus 753 ~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~dLe~La~ 829 (1222)
+|++| ||++.+++++|+...|.+|+++|.. ...+ .+.++..||.
T Consensus 285 -------------------------------~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~--~~~~~~~~~~~~la~ 331 (389)
T PRK03992 285 -------------------------------PAILRPGRFDRIIEVPLPDEEGRLEILKIHTR--KMNLADDVDLEELAE 331 (389)
T ss_pred -------------------------------HHHcCCccCceEEEECCCCHHHHHHHHHHHhc--cCCCCCcCCHHHHHH
Confidence 28888 9999999999999999999999854 3344 4588999999
Q ss_pred cccCCCHHHHHHHHhhhhhhhhccccCCCCCCCccccccCchhhhHHHHHhhhhhhhh
Q 000925 830 KDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKS 887 (1222)
Q Consensus 830 ~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~~eik~ 887 (1222)
.|.||+|+||+.+|++|...|+.+.. -.+...||+.+...+.+
T Consensus 332 ~t~g~sgadl~~l~~eA~~~a~~~~~---------------~~i~~~d~~~A~~~~~~ 374 (389)
T PRK03992 332 LTEGASGADLKAICTEAGMFAIRDDR---------------TEVTMEDFLKAIEKVMG 374 (389)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHcCC---------------CCcCHHHHHHHHHHHhc
Confidence 99999999999999999999987421 12456777777666544
No 67
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.68 E-value=7.2e-17 Score=208.66 Aligned_cols=132 Identities=20% Similarity=0.190 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcchhhhhccChh---hHHHHHHHHhcC-----CCCEEEEEeccCCCCccccCCCCC
Q 000925 658 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGNND---AYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGG 729 (1222)
Q Consensus 658 k~~~~~l~ev~~~esk~~P~Ilfi~die~~l~~~~~---~~~~l~~~L~~l-----~g~vvvIgS~~~~d~~k~k~~~~~ 729 (1222)
+.-+..+|+.+.. ..|+||||||||. |+.+.+ ..+.|...|+.. ..+||||||++++|.
T Consensus 1718 ~~rIr~lFelARk---~SPCIIFIDEIDa-L~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~--------- 1784 (2281)
T CHL00206 1718 RFYITLQFELAKA---MSPCIIWIPNIHD-LNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQK--------- 1784 (2281)
T ss_pred HHHHHHHHHHHHH---CCCeEEEEEchhh-cCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCccc---------
Confidence 3458999999988 8999999999999 564322 245566666654 237999999995554
Q ss_pred ceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchh
Q 000925 730 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 807 (1222)
Q Consensus 730 ~~l~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~I 807 (1222)
||| ||+| ||++++++++|+..+|..|
T Consensus 1785 -------------LDP---------------------------------------ALLRPGRFDR~I~Ir~Pd~p~R~ki 1812 (2281)
T CHL00206 1785 -------------VDP---------------------------------------ALIAPNKLNTCIKIRRLLIPQQRKH 1812 (2281)
T ss_pred -------------CCH---------------------------------------hHcCCCCCCeEEEeCCCCchhHHHH
Confidence 444 9999 9999999999999999999
Q ss_pred hHHHHHhhhCCC--CcccchhhhccccCCCHHHHHHHHhhhhhhhhccc
Q 000925 808 ISIRSVLSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 854 (1222)
Q Consensus 808 l~IhT~l~~~~l--~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~ 854 (1222)
+.|+...+.-.+ .+++++.+|..|.||+||||+.||++|++.|+.+.
T Consensus 1813 L~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1813 FFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred HHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 998643333333 34689999999999999999999999999998754
No 68
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3e-15 Score=184.83 Aligned_cols=362 Identities=19% Similarity=0.249 Sum_probs=209.1
Q ss_pred HHHHhhccCCCCeEEEEcchhhhhc-c-----ChhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCCCCCceeeccCcc
Q 000925 665 FEVALNESKSSPLIVFVKDIEKSLT-G-----NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSN 738 (1222)
Q Consensus 665 ~ev~~~esk~~P~Ilfi~die~~l~-~-----~~~~~~~l~~~L~~l~g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~ 738 (1222)
-.|+.+..+..++|||||+++.+++ | ..+.-+.||.+|. +|.+-+||++|.
T Consensus 252 k~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--RGeL~~IGATT~--------------------- 308 (786)
T COG0542 252 KAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA--RGELRCIGATTL--------------------- 308 (786)
T ss_pred HHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--cCCeEEEEeccH---------------------
Confidence 3444455556799999999999887 2 3889999999998 899999999992
Q ss_pred hhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHH---HH----HHHHHHhhcchhhhccchhhHHH
Q 000925 739 QTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEAL---LS----DWKQQLERDVETLKGQSNIISIR 811 (1222)
Q Consensus 739 ~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeAL---lR----Rferq~e~~Lpd~~gR~~Il~Ih 811 (1222)
+.||...+.+.+|.++| .+|.+..|.-+.- || ||+.|-.....|.. +.-.
T Consensus 309 -----------------~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~A-----l~aA 365 (786)
T COG0542 309 -----------------DEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEA-----LVAA 365 (786)
T ss_pred -----------------HHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHH-----HHHH
Confidence 45777788889999999 7899999966553 34 77766554444432 1111
Q ss_pred HHhhhCCCCcccchhhhccccCCCHHHHHHHHhhhhhhhhccccCCCCCC------------CccccccC-chhhhHHHH
Q 000925 812 SVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD------------AKLKISTE-SIMYGLNIL 878 (1222)
Q Consensus 812 T~l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~------------~kl~id~~-sI~~~~~df 878 (1222)
-.|...-+.+.+|-. ..|.-+-..++...++...|..... ..+.-..+ .-+......
T Consensus 366 v~LS~RYI~dR~LPD----------KAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~ 435 (786)
T COG0542 366 VTLSDRYIPDRFLPD----------KAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEI 435 (786)
T ss_pred HHHHHhhcccCCCCc----------hHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 112222222222222 2222222222222222110000000 00000000 000000000
Q ss_pred Hhhh-hhhhhhhhhhccccChhHHHHHHhc-CCCCCCCC-----------CCCc-ccccCcHHHHHHHHHHHHccccChh
Q 000925 879 QGIQ-SESKSLKKSLKDVVTENEFEKKLLA-DVIPPSDI-----------GVTF-DDIGALENVKDTLKELVMLPLQRPE 944 (1222)
Q Consensus 879 ~~a~-~eik~~~~slk~lv~~~e~~~~ll~-~vIp~~e~-----------~vtf-ddI~Gle~ik~~L~e~v~~pL~~pe 944 (1222)
.... ..+......+..-+..++....... .-||.... ...+ ..++|++++...+.+.+..
T Consensus 436 ~~~~~~~~~~~~~~~~~~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr------ 509 (786)
T COG0542 436 IKLKEGRIPELEKELEAEVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR------ 509 (786)
T ss_pred HHHhhhhhhhHHHHHhhccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH------
Confidence 0000 0000000000000111111111110 01111100 0011 3489999999999888864
Q ss_pred hhhcCCCC---CCCccceEECCCCChHHHHHHHHHHHhC---CcEEEEeccccccc------------cccchHHHHHHH
Q 000925 945 LFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSK------------WFGEGEKYVKAV 1006 (1222)
Q Consensus 945 lf~k~~l~---~Pp~gILL~GPpGTGKT~LArAIA~elg---~~fi~v~~s~L~s~------------~~G~se~~I~~l 1006 (1222)
.+.|+. +|...+||.||+|+|||.||+++|..+. -.++.+||++++.+ |+|..+ .+.
T Consensus 510 --aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee---GG~ 584 (786)
T COG0542 510 --ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE---GGQ 584 (786)
T ss_pred --HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc---ccc
Confidence 344443 4444589999999999999999999994 78999999986543 444333 234
Q ss_pred HHHH-HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccC-------CCcEEEEEecCCC--------
Q 000925 1007 FSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD-------KERVLVLAATNRP-------- 1070 (1222)
Q Consensus 1007 F~~A-~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~-------~~~VlVIaTTN~p-------- 1070 (1222)
+.+| ++.+.+||++|||+.- +..+++.|+..+|...-.+ =.+.+||+|+|-=
T Consensus 585 LTEaVRr~PySViLlDEIEKA------------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~ 652 (786)
T COG0542 585 LTEAVRRKPYSVILLDEIEKA------------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDA 652 (786)
T ss_pred hhHhhhcCCCeEEEechhhhc------------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhc
Confidence 4555 4555689999999864 3567788888776543222 1468999999731
Q ss_pred --------------------CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000925 1071 --------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1105 (1222)
Q Consensus 1071 --------------------~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k 1105 (1222)
..+.|+|+.|++.+|.|...+.+...+|+...+.+
T Consensus 653 ~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 653 DGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred cccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 13457888899999999999999999999988765
No 69
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.65 E-value=6.2e-16 Score=167.01 Aligned_cols=197 Identities=22% Similarity=0.295 Sum_probs=124.9
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 996 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~ 996 (1222)
.+|+|++|+++++..+.-++.....+ ..+..++|||||||+|||+||+.||++++.+|..++.+.+..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 58999999999999988776542221 223468999999999999999999999999999988765321
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhh-hccCCccc------CCCcEEEEEecCC
Q 000925 997 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV-NWDGLRTK------DKERVLVLAATNR 1069 (1222)
Q Consensus 997 G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~-~ldgl~~k------~~~~VlVIaTTN~ 1069 (1222)
...+..++.... ...||||||||+| +...++.+...+..+.. .+-|.... +-.++.+|+||++
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRl-----nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr 158 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRL-----NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR 158 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC-------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhc-----cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc
Confidence 123344444332 3579999999998 44445555555544433 12222111 1246899999999
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 000925 1070 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1136 (1222)
Q Consensus 1070 p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~A 1136 (1222)
...|...++.||..+..+...+.++..+|++.-....++. ++....+||..+.| +++-..+|++++
T Consensus 159 ~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 159 AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 9999999999999878899999999999998766554443 44557889999887 455444554443
No 70
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.9e-15 Score=175.13 Aligned_cols=219 Identities=16% Similarity=0.289 Sum_probs=168.1
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 996 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~ 996 (1222)
.+|+.++...+.|+.|.+-+...+...+.|.+.|.... +|.|||||||||||+++.|||+++++.++.++.++....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK-RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK-RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh-ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 78999999999999999999998999999998875544 899999999999999999999999999999988765432
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc-----hHH-HHHHHHHhHhhhccCCcccCCCcEEEEEecCCC
Q 000925 997 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG-----EHE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1070 (1222)
Q Consensus 997 G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~-----~~e-~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p 1070 (1222)
. .++.++..+. ..+||+|.+||.-+.-+.... .+. ...-.+..|++.+||+......--+||+|||.+
T Consensus 275 --~--dLr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 --S--DLRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred --H--HHHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 1 2666655443 348999999998764322111 111 122356779999999988766678999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCC--CcHHHHHHHHHH---HHhhhhHH
Q 000925 1071 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADG--YSGSDLKNLCVT---AAHCPIRE 1143 (1222)
Q Consensus 1071 ~~Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~G--ySg~DL~~L~~~---Aa~~airr 1143 (1222)
+.||||++| |.+..|++..-+.+.-..++..|+.... +..-+.++....++ .+++|+...... .+..++++
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~ 426 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKG 426 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHH
Confidence 999999999 9999999999999999999999987532 23334555554444 589998855432 34555666
Q ss_pred HHH
Q 000925 1144 ILE 1146 (1222)
Q Consensus 1144 ii~ 1146 (1222)
+++
T Consensus 427 Lv~ 429 (457)
T KOG0743|consen 427 LVE 429 (457)
T ss_pred HHH
Confidence 554
No 71
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.65 E-value=2.5e-15 Score=189.82 Aligned_cols=184 Identities=25% Similarity=0.388 Sum_probs=139.4
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 986 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v 986 (1222)
-.+++++|.++....+.+.+.. +...++||+||||||||++|+++|+.+ +..++.+
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 3577899999888877766541 123579999999999999999999987 6789999
Q ss_pred eccccc--cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch-HHHHHHHHHhHhhhccCCcccCCCcEEE
Q 000925 987 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLV 1063 (1222)
Q Consensus 987 ~~s~L~--s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-~e~l~~il~~Ll~~ldgl~~k~~~~VlV 1063 (1222)
++..+. ..|.|+.+..++.+|..+.++.+.||||||||.|++.....+. .... .++. ..+ .++.+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~-~~L~---~~l------~~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDAS-NLLK---PAL------SSGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHH-HHHH---HHH------hCCCeEE
Confidence 988876 4688999999999999998888999999999999865432221 1221 2222 222 2367999
Q ss_pred EEecCCC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcc----c-CCcccHHHHHHHcCCCc
Q 000925 1064 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYS 1125 (1222)
Q Consensus 1064 IaTTN~p-----~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~----l-~sdidl~~LA~~t~GyS 1125 (1222)
|++|+.. ...|+++.|||. .|.|+.|+.+++.+|++.+..... + ..+..+..++..+..|-
T Consensus 315 IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 9999863 468999999995 799999999999999998776521 1 24555666776666554
No 72
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.2e-16 Score=169.32 Aligned_cols=211 Identities=22% Similarity=0.270 Sum_probs=161.5
Q ss_pred cccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEecC
Q 000925 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1222)
Q Consensus 449 ~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~~ 528 (1222)
-+||+.+...- .+.-.-|.+.+-.+|-|++- |..-=-...+.|||+|||| ..+..+|+|.|+.-+|.++-|=.+
T Consensus 172 pdvty~dvggc--keqieklrevve~pll~per--fv~lgidppkgvllygppg--tgktl~aravanrtdacfirvigs 245 (435)
T KOG0729|consen 172 PDVTYSDVGGC--KEQIEKLREVVELPLLHPER--FVNLGIDPPKGVLLYGPPG--TGKTLCARAVANRTDACFIRVIGS 245 (435)
T ss_pred CCcccccccch--HHHHHHHHHHHhccccCHHH--HhhcCCCCCCceEEeCCCC--CchhHHHHHHhcccCceEEeehhH
Confidence 35666666665 55566677777788888764 4331134457899999999 799999999999999998765433
Q ss_pred CCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCee-eeeeccCCCccccCCCCCCCccccceeeecc
Q 000925 529 LLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV-KFVGNVTSGTTVQPTLRGPGIGFRGRVILPF 607 (1222)
Q Consensus 529 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v-~~~g~~~~~~~~~~~~~~~~~g~rg~v~~~~ 607 (1222)
.| | ||||.
T Consensus 246 el---------------------------------------------vqkyvge-------------------------- 254 (435)
T KOG0729|consen 246 EL---------------------------------------------VQKYVGE-------------------------- 254 (435)
T ss_pred HH---------------------------------------------HHHHhhh--------------------------
Confidence 33 3 78872
Q ss_pred ccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcchhhh
Q 000925 608 EDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKS 687 (1222)
Q Consensus 608 e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~die~~ 687 (1222)
.-+.+.+||+++.. +..+||||++||.
T Consensus 255 -------------------------------------------------garmvrelf~mart---kkaciiffdeida- 281 (435)
T KOG0729|consen 255 -------------------------------------------------GARMVRELFEMART---KKACIIFFDEIDA- 281 (435)
T ss_pred -------------------------------------------------hHHHHHHHHHHhcc---cceEEEEeecccc-
Confidence 12378999999999 8999999999999
Q ss_pred hc---------cChhhHHHHHHHHhcC-----CCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCccc
Q 000925 688 LT---------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSR 753 (1222)
Q Consensus 688 l~---------~~~~~~~~l~~~L~~l-----~g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~~ 753 (1222)
++ +.++.-...-..+..| .||+-|+-++|++|. +||
T Consensus 282 iggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt----------------------ldp-------- 331 (435)
T KOG0729|consen 282 IGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT----------------------LDP-------- 331 (435)
T ss_pred ccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC----------------------cCH--------
Confidence 54 3444444433444444 469999999996554 333
Q ss_pred cccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHH-hhhCCCCcccchhhhcc
Q 000925 754 LHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIK 830 (1222)
Q Consensus 754 ~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~-l~~~~l~~~dLe~La~~ 830 (1222)
||+| |++|.+||.|||++||.+|++||++ |.-. .+.-.+-||.+
T Consensus 332 -------------------------------allrpgrldrkvef~lpdlegrt~i~kihaksmsve--rdir~ellarl 378 (435)
T KOG0729|consen 332 -------------------------------ALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE--RDIRFELLARL 378 (435)
T ss_pred -------------------------------hhcCCcccccceeccCCcccccceeEEEeccccccc--cchhHHHHHhh
Confidence 9999 9999999999999999999999987 5321 23456679999
Q ss_pred ccCCCHHHHHHHHhhhhhhhhc
Q 000925 831 DQTLTTEGVEKIVGWALSHHFM 852 (1222)
Q Consensus 831 tkg~sgadI~~Lv~~A~s~Al~ 852 (1222)
+.+-+||||+.+|++|--+|+.
T Consensus 379 cpnstgaeirsvcteagmfair 400 (435)
T KOG0729|consen 379 CPNSTGAEIRSVCTEAGMFAIR 400 (435)
T ss_pred CCCCcchHHHHHHHHhhHHHHH
Confidence 9999999999999999999986
No 73
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.63 E-value=3.7e-16 Score=189.44 Aligned_cols=216 Identities=24% Similarity=0.348 Sum_probs=160.6
Q ss_pred cCCCccccccccccccchhHHHHHHHHhhhhccccccc-ccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeE
Q 000925 444 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNF-AKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (1222)
Q Consensus 444 v~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~-~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~l 522 (1222)
...+..+++|++++.+ ++.|..|...+. .|++++. .+++ ....+.|||+|||| ..+++||||||++.++++
T Consensus 45 ~~~~~~~~~~~di~g~--~~~k~~l~~~~~-~l~~~~~~~~~g---~~~~~giLL~GppG--tGKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGI--DEAKEELMEIVD-FLKNPSKFTKLG---AKIPKGVLLVGPPG--TGKTLLAKAVAGEAGVPF 116 (495)
T ss_pred ccCCCCCCCHHHhCCH--HHHHHHHHHHHH-HHHCHHHHHhcC---CCCCCcEEEECCCC--CCHHHHHHHHHHHcCCCe
Confidence 4455789999999998 999998887666 4777654 2333 34457799999999 899999999999999888
Q ss_pred EEEecCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccce
Q 000925 523 LIVDSLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGR 602 (1222)
Q Consensus 523 L~~D~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~ 602 (1222)
+.++.+.|.. .|+|.
T Consensus 117 ~~i~~~~~~~--------------------------------------------~~~g~--------------------- 131 (495)
T TIGR01241 117 FSISGSDFVE--------------------------------------------MFVGV--------------------- 131 (495)
T ss_pred eeccHHHHHH--------------------------------------------HHhcc---------------------
Confidence 7766554411 12220
Q ss_pred eeeccccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEc
Q 000925 603 VILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVK 682 (1222)
Q Consensus 603 v~~~~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~ 682 (1222)
..-.+..+|+.+.. ..|.|||||
T Consensus 132 ------------------------------------------------------~~~~l~~~f~~a~~---~~p~Il~iD 154 (495)
T TIGR01241 132 ------------------------------------------------------GASRVRDLFEQAKK---NAPCIIFID 154 (495)
T ss_pred ------------------------------------------------------cHHHHHHHHHHHHh---cCCCEEEEe
Confidence 00145667777765 789999999
Q ss_pred chhhhhccC-----------hhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCC
Q 000925 683 DIEKSLTGN-----------NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPD 749 (1222)
Q Consensus 683 die~~l~~~-----------~~~~~~l~~~L~~l~--g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd 749 (1222)
|+|.+.... .+..+.|-..++.+. ++|+|||++|+++. ||+
T Consensus 155 Eid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~----------------------ld~---- 208 (495)
T TIGR01241 155 EIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDV----------------------LDP---- 208 (495)
T ss_pred chhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhh----------------------cCH----
Confidence 999965421 123333444444443 37999999995443 333
Q ss_pred CccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHHhhhCCC-Ccccchh
Q 000925 750 NFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLES 826 (1222)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~dLe~ 826 (1222)
|++| ||++++++++|+...|.+|+++|.. ..++ .+.+++.
T Consensus 209 -----------------------------------al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~--~~~~~~~~~l~~ 251 (495)
T TIGR01241 209 -----------------------------------ALLRPGRFDRQVVVDLPDIKGREEILKVHAK--NKKLAPDVDLKA 251 (495)
T ss_pred -----------------------------------HHhcCCcceEEEEcCCCCHHHHHHHHHHHHh--cCCCCcchhHHH
Confidence 8888 9999999999999999999999854 2233 5778999
Q ss_pred hhccccCCCHHHHHHHHhhhhhhhhc
Q 000925 827 LCIKDQTLTTEGVEKIVGWALSHHFM 852 (1222)
Q Consensus 827 La~~tkg~sgadI~~Lv~~A~s~Al~ 852 (1222)
+|..+.||+++||+.+|++|+..+..
T Consensus 252 la~~t~G~sgadl~~l~~eA~~~a~~ 277 (495)
T TIGR01241 252 VARRTPGFSGADLANLLNEAALLAAR 277 (495)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887765
No 74
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.62 E-value=8e-15 Score=167.61 Aligned_cols=176 Identities=24% Similarity=0.455 Sum_probs=131.1
Q ss_pred CCCcccccCcHHHH---HHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000925 916 GVTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 992 (1222)
Q Consensus 916 ~vtfddI~Gle~ik---~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 992 (1222)
..++++++|++.+. ..|++.+.. + ...+++||||||||||+||+.||...+..|..++...
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~----------~----~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA----------G----HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc----------C----CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 35788999998876 345555541 2 2357999999999999999999999999999998643
Q ss_pred cccccchHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEec-
Q 000925 993 SKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT- 1067 (1222)
Q Consensus 993 s~~~G~se~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTT- 1067 (1222)
.+-+.++.+|+.|++.. ..||||||||++ +...|.. |+-.+ +++.|++|++|
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----nK~QQD~-------lLp~v------E~G~iilIGATT 140 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----NKAQQDA-------LLPHV------ENGTIILIGATT 140 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----Chhhhhh-------hhhhh------cCCeEEEEeccC
Confidence 34567999999996543 489999999988 3222222 23222 34778888887
Q ss_pred -CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh--cccC------CcccHHHHHHHcCCCcHHHHHH
Q 000925 1068 -NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK--EELA------SDVDLEGIANMADGYSGSDLKN 1131 (1222)
Q Consensus 1068 -N~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k--~~l~------sdidl~~LA~~t~GySg~DL~~ 1131 (1222)
|+.+.+.+++++|. +++.+...+.++..++++..+.. ..+. ++..++.|+..++|...+-|..
T Consensus 141 ENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~ 212 (436)
T COG2256 141 ENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNL 212 (436)
T ss_pred CCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHH
Confidence 77899999999999 78999999999999999884433 2222 3445778888888876655543
No 75
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.62 E-value=5.6e-16 Score=183.88 Aligned_cols=215 Identities=24% Similarity=0.278 Sum_probs=162.9
Q ss_pred cccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEecC
Q 000925 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1222)
Q Consensus 449 ~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~~ 528 (1222)
-.+||++...+ +..+..|.++.-..|.++++.+.. .+. ..+.|||+||+| ..+++||||+|++.++.++-++.+
T Consensus 178 p~~~~~DIgGl--~~qi~~l~e~v~lpl~~p~~~~~~-gi~-~p~gVLL~GPPG--TGKT~LAraIA~el~~~fi~V~~s 251 (438)
T PTZ00361 178 PLESYADIGGL--EQQIQEIKEAVELPLTHPELYDDI-GIK-PPKGVILYGPPG--TGKTLLAKAVANETSATFLRVVGS 251 (438)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHhhhhCHHHHHhc-CCC-CCcEEEEECCCC--CCHHHHHHHHHHhhCCCEEEEecc
Confidence 35778888888 999999999998899998875321 232 446799999999 899999999999998887777654
Q ss_pred CCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccceeeeccc
Q 000925 529 LLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFE 608 (1222)
Q Consensus 529 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~v~~~~e 608 (1222)
.|.. +|+|.
T Consensus 252 eL~~--------------------------------------------k~~Ge--------------------------- 260 (438)
T PTZ00361 252 ELIQ--------------------------------------------KYLGD--------------------------- 260 (438)
T ss_pred hhhh--------------------------------------------hhcch---------------------------
Confidence 4411 23331
Q ss_pred cCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcchhhhh
Q 000925 609 DNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSL 688 (1222)
Q Consensus 609 ~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~die~~l 688 (1222)
....+..+|+.+.. ..|+||||||+|.++
T Consensus 261 ------------------------------------------------~~~~vr~lF~~A~~---~~P~ILfIDEID~l~ 289 (438)
T PTZ00361 261 ------------------------------------------------GPKLVRELFRVAEE---NAPSIVFIDEIDAIG 289 (438)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHh---CCCcEEeHHHHHHHh
Confidence 11257778887776 789999999999976
Q ss_pred cc--------ChhhHHHHHHHHhcC-----CCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCccccc
Q 000925 689 TG--------NNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLH 755 (1222)
Q Consensus 689 ~~--------~~~~~~~l~~~L~~l-----~g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~~~~ 755 (1222)
.. ..+....+...|..+ .++|+||+++|++|. +|
T Consensus 290 ~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~----------------------LD----------- 336 (438)
T PTZ00361 290 TKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES----------------------LD----------- 336 (438)
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH----------------------hh-----------
Confidence 42 122333333344333 348999999995443 22
Q ss_pred cccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHHhhhCCC-Ccccchhhhcccc
Q 000925 756 DRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQ 832 (1222)
Q Consensus 756 ~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~dLe~La~~tk 832 (1222)
+|++| ||++++++++|+...|.+|+++|+. .-.+ ++++++.++..+.
T Consensus 337 ----------------------------paLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~--k~~l~~dvdl~~la~~t~ 386 (438)
T PTZ00361 337 ----------------------------PALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS--KMTLAEDVDLEEFIMAKD 386 (438)
T ss_pred ----------------------------HHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh--cCCCCcCcCHHHHHHhcC
Confidence 38887 9999999999999999999999965 2234 6789999999999
Q ss_pred CCCHHHHHHHHhhhhhhhhccc
Q 000925 833 TLTTEGVEKIVGWALSHHFMHC 854 (1222)
Q Consensus 833 g~sgadI~~Lv~~A~s~Al~r~ 854 (1222)
||+|+||+.+|++|...|+++.
T Consensus 387 g~sgAdI~~i~~eA~~~Alr~~ 408 (438)
T PTZ00361 387 ELSGADIKAICTEAGLLALRER 408 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998743
No 76
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=9.8e-16 Score=185.06 Aligned_cols=217 Identities=23% Similarity=0.356 Sum_probs=170.3
Q ss_pred CCccccccccccccchhHHHHHHHHhhhhcccccc-cccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEE
Q 000925 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (1222)
Q Consensus 446 ~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~-~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~ 524 (1222)
...+.|+|++.-.- |+.|.-|.+-.- .||.+. |.+.+. -.-+.+||.|||| ....+||||.|-+-++++.-
T Consensus 142 ~~~~~v~F~DVAG~--dEakeel~EiVd-fLk~p~ky~~lGa---kiPkGvlLvGpPG--TGKTLLAkAvAgEA~VPFf~ 213 (596)
T COG0465 142 EDQVKVTFADVAGV--DEAKEELSELVD-FLKNPKKYQALGA---KIPKGVLLVGPPG--TGKTLLAKAVAGEAGVPFFS 213 (596)
T ss_pred ccccCcChhhhcCc--HHHHHHHHHHHH-HHhCchhhHhccc---ccccceeEecCCC--CCcHHHHHHHhcccCCCcee
Confidence 34788999997777 999999998875 777754 434443 5668999999999 89999999999999999877
Q ss_pred EecCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccceee
Q 000925 525 VDSLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVI 604 (1222)
Q Consensus 525 ~D~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~v~ 604 (1222)
.-.++|-- -|||-..+
T Consensus 214 iSGS~FVe--------------------------------------------mfVGvGAs-------------------- 229 (596)
T COG0465 214 ISGSDFVE--------------------------------------------MFVGVGAS-------------------- 229 (596)
T ss_pred ccchhhhh--------------------------------------------hhcCCCcH--------------------
Confidence 66666621 24441111
Q ss_pred eccccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcch
Q 000925 605 LPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDI 684 (1222)
Q Consensus 605 ~~~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~di 684 (1222)
-++.||+=+.+ +.|+|||||++
T Consensus 230 -------------------------------------------------------RVRdLF~qAkk---~aP~IIFIDEi 251 (596)
T COG0465 230 -------------------------------------------------------RVRDLFEQAKK---NAPCIIFIDEI 251 (596)
T ss_pred -------------------------------------------------------HHHHHHHHhhc---cCCCeEEEehh
Confidence 35567777766 89999999999
Q ss_pred hhhhcc---------C---hhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCC
Q 000925 685 EKSLTG---------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 750 (1222)
Q Consensus 685 e~~l~~---------~---~~~~~~l~~~L~~l~--g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~ 750 (1222)
|. +++ + .+..+.+...++.+. .+||||+++||+|. +|+
T Consensus 252 DA-vGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdV----------------------lD~----- 303 (596)
T COG0465 252 DA-VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDV----------------------LDP----- 303 (596)
T ss_pred hh-cccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCccc----------------------chH-----
Confidence 99 653 2 245555556666665 38999999996554 333
Q ss_pred ccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHHhhhCCC-Ccccchhh
Q 000925 751 FSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESL 827 (1222)
Q Consensus 751 ~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~dLe~L 827 (1222)
||+| ||+||+-.++||+++|.+|+++| ++..++ +++++..+
T Consensus 304 ----------------------------------ALlRpgRFDRqI~V~~PDi~gRe~IlkvH--~~~~~l~~~Vdl~~i 347 (596)
T COG0465 304 ----------------------------------ALLRPGRFDRQILVELPDIKGREQILKVH--AKNKPLAEDVDLKKI 347 (596)
T ss_pred ----------------------------------hhcCCCCcceeeecCCcchhhHHHHHHHH--hhcCCCCCcCCHHHH
Confidence 9999 99999999999999999999999 444445 89999999
Q ss_pred hccccCCCHHHHHHHHhhhhhhhhccccC
Q 000925 828 CIKDQTLTTEGVEKIVGWALSHHFMHCSE 856 (1222)
Q Consensus 828 a~~tkg~sgadI~~Lv~~A~s~Al~r~~~ 856 (1222)
|..|.||+||+++.++.+|+.+|.++...
T Consensus 348 Ar~tpGfsGAdL~nl~NEAal~aar~n~~ 376 (596)
T COG0465 348 ARGTPGFSGADLANLLNEAALLAARRNKK 376 (596)
T ss_pred hhhCCCcccchHhhhHHHHHHHHHHhcCe
Confidence 99999999999999999999999886543
No 77
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.1e-15 Score=164.90 Aligned_cols=212 Identities=20% Similarity=0.283 Sum_probs=166.6
Q ss_pred cccccccccccchhHHHHHHHHhhhhcccccccccccCCC-CCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEec
Q 000925 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDL-PTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1222)
Q Consensus 449 ~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l-~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~ 527 (1222)
-..++.+.... |..-+-|++|....+.|++-.+ +| -...+.+|++|||| ..+.+||+|-|-+-.|.+|-|-.
T Consensus 166 PtE~YsDiGGl--dkQIqELvEAiVLpmth~ekF~---~lgi~pPKGvLmYGPPG--TGKTlmARAcAaqT~aTFLKLAg 238 (424)
T KOG0652|consen 166 PTEQYSDIGGL--DKQIQELVEAIVLPMTHKEKFE---NLGIRPPKGVLMYGPPG--TGKTLMARACAAQTNATFLKLAG 238 (424)
T ss_pred CcccccccccH--HHHHHHHHHHhccccccHHHHH---hcCCCCCCceEeeCCCC--CcHHHHHHHHHHhccchHHHhcc
Confidence 34567777777 8888899999999999988643 33 23457899999999 89999999999999988764432
Q ss_pred CCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCee-eeeeccCCCccccCCCCCCCccccceeeec
Q 000925 528 LLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV-KFVGNVTSGTTVQPTLRGPGIGFRGRVILP 606 (1222)
Q Consensus 528 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v-~~~g~~~~~~~~~~~~~~~~~g~rg~v~~~ 606 (1222)
-.| | -|+|.
T Consensus 239 PQL---------------------------------------------VQMfIGd------------------------- 248 (424)
T KOG0652|consen 239 PQL---------------------------------------------VQMFIGD------------------------- 248 (424)
T ss_pred hHH---------------------------------------------Hhhhhcc-------------------------
Confidence 111 2 24441
Q ss_pred cccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcchhh
Q 000925 607 FEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEK 686 (1222)
Q Consensus 607 ~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~die~ 686 (1222)
.-.++...|.++.+ ..|.||||+++|.
T Consensus 249 --------------------------------------------------GAkLVRDAFaLAKE---kaP~IIFIDElDA 275 (424)
T KOG0652|consen 249 --------------------------------------------------GAKLVRDAFALAKE---KAPTIIFIDELDA 275 (424)
T ss_pred --------------------------------------------------hHHHHHHHHHHhhc---cCCeEEEEechhh
Confidence 11267778888888 9999999999999
Q ss_pred hhc--------cChhhHHHHHHHHhcCCC-----CEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCccc
Q 000925 687 SLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSR 753 (1222)
Q Consensus 687 ~l~--------~~~~~~~~l~~~L~~l~g-----~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~~ 753 (1222)
+=. |..+.-...-..|..|.| .|-||+++|+.|- +||
T Consensus 276 IGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi----------------------LDP-------- 325 (424)
T KOG0652|consen 276 IGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI----------------------LDP-------- 325 (424)
T ss_pred hccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc----------------------cCH--------
Confidence 422 344544444455555544 8999999998665 555
Q ss_pred cccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHH-hhhCCCCcccchhhhcc
Q 000925 754 LHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIK 830 (1222)
Q Consensus 754 ~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~-l~~~~l~~~dLe~La~~ 830 (1222)
||+| |++|.+||++|+..+|..|++||.+ |.- -++++.++||..
T Consensus 326 -------------------------------ALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv--~~DvNfeELaRs 372 (424)
T KOG0652|consen 326 -------------------------------ALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV--SDDVNFEELARS 372 (424)
T ss_pred -------------------------------HHhhcccccccccCCCCChHHHHHHHHHhhhhcCC--CCCCCHHHHhhc
Confidence 9999 9999999999999999999999987 432 268999999999
Q ss_pred ccCCCHHHHHHHHhhhhhhhhcc
Q 000925 831 DQTLTTEGVEKIVGWALSHHFMH 853 (1222)
Q Consensus 831 tkg~sgadI~~Lv~~A~s~Al~r 853 (1222)
|.+|.||...++|-+|--.|++|
T Consensus 373 TddFNGAQcKAVcVEAGMiALRr 395 (424)
T KOG0652|consen 373 TDDFNGAQCKAVCVEAGMIALRR 395 (424)
T ss_pred ccccCchhheeeehhhhHHHHhc
Confidence 99999999999999999988875
No 78
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.61 E-value=2.8e-14 Score=162.21 Aligned_cols=198 Identities=21% Similarity=0.251 Sum_probs=136.0
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccccccc
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 997 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G 997 (1222)
+|++++|++++++.|..++.....+ ..++.+++|+||||||||+||+++|++++.++..+..+.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~---- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK---- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC----
Confidence 6899999999999998877532111 223467999999999999999999999998877666543221
Q ss_pred chHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhc--cCC-cc----cCCCcEEEEEecCCC
Q 000925 998 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGL-RT----KDKERVLVLAATNRP 1070 (1222)
Q Consensus 998 ~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~l--dgl-~~----k~~~~VlVIaTTN~p 1070 (1222)
...+...+... ..+.||||||||.+. ...++.+..+++.....+ ... .. ....++.+|++|+++
T Consensus 69 --~~~l~~~l~~~--~~~~vl~iDEi~~l~-----~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 69 --PGDLAAILTNL--EEGDVLFIDEIHRLS-----PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred --chhHHHHHHhc--ccCCEEEEehHhhhC-----HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 11222222222 246899999999983 222333333333222111 100 00 012348899999999
Q ss_pred CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000925 1071 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1138 (1222)
Q Consensus 1071 ~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~Aa~ 1138 (1222)
..+++++++||...+.+..|+.+++.++++..+....+. ++..++.|+..+.|+. +.+.+++..++.
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~ 207 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRD 207 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHH
Confidence 999999999998888999999999999999888765443 4555788999988865 555677766543
No 79
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.60 E-value=4.9e-14 Score=162.45 Aligned_cols=200 Identities=22% Similarity=0.257 Sum_probs=139.5
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 996 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~ 996 (1222)
.+|++++|.++.++.+..++..... . ..++.++||+||||||||+||+++|++++..+..++.+.+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-------~--~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-------R--GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-------c--CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 4799999999999999887753111 1 234578999999999999999999999999887776554321
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhh--ccCCccc-----CCCcEEEEEecCC
Q 000925 997 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRTK-----DKERVLVLAATNR 1069 (1222)
Q Consensus 997 G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~--ldgl~~k-----~~~~VlVIaTTN~ 1069 (1222)
...+..++... ..++||||||||.+. ....+.+..+++..... ++..... .-.++.+|++|++
T Consensus 90 ---~~~l~~~l~~l--~~~~vl~IDEi~~l~-----~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 90 ---PGDLAAILTNL--EEGDVLFIDEIHRLS-----PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred ---hHHHHHHHHhc--ccCCEEEEecHhhcc-----hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 12344444433 346899999999882 12233333333322111 1110000 1134788999999
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 000925 1070 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 1139 (1222)
Q Consensus 1070 p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~Aa~~ 1139 (1222)
+..+++.+++||...+.++.|+.+++.+|++.......+. ++..+..|+..+.|+. +.+..++..+...
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~ 229 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDF 229 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHH
Confidence 9999999999998889999999999999999988876544 4455788999998864 5666666655443
No 80
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.5e-15 Score=161.53 Aligned_cols=216 Identities=25% Similarity=0.325 Sum_probs=170.2
Q ss_pred CCccccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEE
Q 000925 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1222)
Q Consensus 446 ~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~ 525 (1222)
-+.-+||+.+.... +-.|+-..+|+-.+|.|.++.+.. .+ ...+.+||+|||| ..+.|||||.|||-.|.++-+
T Consensus 147 ~ekpdvsy~diggl--d~qkqeireavelplt~~~ly~qi-gi-dpprgvllygppg--~gktml~kava~~t~a~firv 220 (408)
T KOG0727|consen 147 DEKPDVSYADIGGL--DVQKQEIREAVELPLTHADLYKQI-GI-DPPRGVLLYGPPG--TGKTMLAKAVANHTTAAFIRV 220 (408)
T ss_pred CCCCCccccccccc--hhhHHHHHHHHhccchHHHHHHHh-CC-CCCcceEEeCCCC--CcHHHHHHHHhhccchheeee
Confidence 45667899999998 999999999999999999996543 23 3458899999999 899999999999999998877
Q ss_pred ecCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccceeee
Q 000925 526 DSLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVIL 605 (1222)
Q Consensus 526 D~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~v~~ 605 (1222)
-.+.|-- ||+|...
T Consensus 221 vgsefvq--------------------------------------------kylgegp---------------------- 234 (408)
T KOG0727|consen 221 VGSEFVQ--------------------------------------------KYLGEGP---------------------- 234 (408)
T ss_pred ccHHHHH--------------------------------------------HHhccCc----------------------
Confidence 6655511 6777210
Q ss_pred ccccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcchh
Q 000925 606 PFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIE 685 (1222)
Q Consensus 606 ~~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~die 685 (1222)
+.+..+|-++.+ ..|.|||||+||
T Consensus 235 -----------------------------------------------------rmvrdvfrlake---napsiifideid 258 (408)
T KOG0727|consen 235 -----------------------------------------------------RMVRDVFRLAKE---NAPSIIFIDEID 258 (408)
T ss_pred -----------------------------------------------------HHHHHHHHHHhc---cCCcEEEeehhh
Confidence 167778888888 999999999999
Q ss_pred hhhcc--------ChhhHHHHHHHHhcCCC-----CEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCcc
Q 000925 686 KSLTG--------NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFS 752 (1222)
Q Consensus 686 ~~l~~--------~~~~~~~l~~~L~~l~g-----~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~ 752 (1222)
.+-.+ ..+.-.-|-..|..+.| ||-||.++|+.|. +||
T Consensus 259 aiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt----------------------ldp------- 309 (408)
T KOG0727|consen 259 AIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT----------------------LDP------- 309 (408)
T ss_pred hHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc----------------------cCH-------
Confidence 95442 23444445555666655 9999999998766 555
Q ss_pred ccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHHhhhCCC-Ccccchhhhc
Q 000925 753 RLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCI 829 (1222)
Q Consensus 753 ~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~dLe~La~ 829 (1222)
|||| |++|.+||+|||...++=++.-- ...-.+ +++||+.+..
T Consensus 310 --------------------------------allrpgrldrkiefplpdrrqkrlvf~ti--tskm~ls~~vdle~~v~ 355 (408)
T KOG0727|consen 310 --------------------------------ALLRPGRLDRKIEFPLPDRRQKRLVFSTI--TSKMNLSDEVDLEDLVA 355 (408)
T ss_pred --------------------------------hhcCCccccccccCCCCchhhhhhhHHhh--hhcccCCcccCHHHHhc
Confidence 9999 99999999999976655444433 233344 7899999999
Q ss_pred cccCCCHHHHHHHHhhhhhhhhc
Q 000925 830 KDQTLTTEGVEKIVGWALSHHFM 852 (1222)
Q Consensus 830 ~tkg~sgadI~~Lv~~A~s~Al~ 852 (1222)
...-.+||+|.++|.+|-.+|..
T Consensus 356 rpdkis~adi~aicqeagm~avr 378 (408)
T KOG0727|consen 356 RPDKISGADINAICQEAGMLAVR 378 (408)
T ss_pred CccccchhhHHHHHHHHhHHHHH
Confidence 99999999999999999998876
No 81
>CHL00176 ftsH cell division protein; Validated
Probab=99.59 E-value=2.2e-15 Score=186.22 Aligned_cols=219 Identities=21% Similarity=0.310 Sum_probs=161.2
Q ss_pred ccCCCccccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeE
Q 000925 443 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (1222)
Q Consensus 443 vv~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~l 522 (1222)
+....+..++|+++..+ +..|.-|.+... .|++++. |..-=....+.|||+|||| ..+++||||||++.++++
T Consensus 172 ~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~-~lk~~~~--~~~~g~~~p~gVLL~GPpG--TGKT~LAralA~e~~~p~ 244 (638)
T CHL00176 172 FQMEADTGITFRDIAGI--EEAKEEFEEVVS-FLKKPER--FTAVGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAEVPF 244 (638)
T ss_pred hhcccCCCCCHHhccCh--HHHHHHHHHHHH-HHhCHHH--HhhccCCCCceEEEECCCC--CCHHHHHHHHHHHhCCCe
Confidence 34566788999999999 999999888765 3777665 3322245567899999999 899999999999999888
Q ss_pred EEEecCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccce
Q 000925 523 LIVDSLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGR 602 (1222)
Q Consensus 523 L~~D~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~ 602 (1222)
+.++.+.|.. .|+|.
T Consensus 245 i~is~s~f~~--------------------------------------------~~~g~--------------------- 259 (638)
T CHL00176 245 FSISGSEFVE--------------------------------------------MFVGV--------------------- 259 (638)
T ss_pred eeccHHHHHH--------------------------------------------Hhhhh---------------------
Confidence 7766555411 11110
Q ss_pred eeeccccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEc
Q 000925 603 VILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVK 682 (1222)
Q Consensus 603 v~~~~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~ 682 (1222)
..-.++.+|+.+.. ..|+|||||
T Consensus 260 ------------------------------------------------------~~~~vr~lF~~A~~---~~P~ILfID 282 (638)
T CHL00176 260 ------------------------------------------------------GAARVRDLFKKAKE---NSPCIVFID 282 (638)
T ss_pred ------------------------------------------------------hHHHHHHHHHHHhc---CCCcEEEEe
Confidence 00134566666655 789999999
Q ss_pred chhhhhc--------cChhhHHHHHHH---HhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCC
Q 000925 683 DIEKSLT--------GNNDAYGALKSK---LENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPD 749 (1222)
Q Consensus 683 die~~l~--------~~~~~~~~l~~~---L~~l~--g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd 749 (1222)
|+|.+.. ++.+.-..+... ++.+. .+|+|||++++++. +|
T Consensus 283 EID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~----------------------LD----- 335 (638)
T CHL00176 283 EIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDI----------------------LD----- 335 (638)
T ss_pred cchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHh----------------------hh-----
Confidence 9999642 122322233333 33332 38999999995333 22
Q ss_pred CccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHHhhhCCC-Ccccchh
Q 000925 750 NFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLES 826 (1222)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~dLe~ 826 (1222)
+|++| ||++++++++|+.+.|..|++.|... ..+ +++++..
T Consensus 336 ----------------------------------~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~--~~~~~d~~l~~ 379 (638)
T CHL00176 336 ----------------------------------AALLRPGRFDRQITVSLPDREGRLDILKVHARN--KKLSPDVSLEL 379 (638)
T ss_pred ----------------------------------hhhhccccCceEEEECCCCHHHHHHHHHHHHhh--cccchhHHHHH
Confidence 28888 99999999999999999999999543 333 6789999
Q ss_pred hhccccCCCHHHHHHHHhhhhhhhhcc
Q 000925 827 LCIKDQTLTTEGVEKIVGWALSHHFMH 853 (1222)
Q Consensus 827 La~~tkg~sgadI~~Lv~~A~s~Al~r 853 (1222)
||..|.||+|+||+.+|++|+..+..+
T Consensus 380 lA~~t~G~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 380 IARRTPGFSGADLANLLNEAAILTARR 406 (638)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998887653
No 82
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.57 E-value=3.4e-14 Score=178.55 Aligned_cols=197 Identities=20% Similarity=0.299 Sum_probs=142.7
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 987 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v~ 987 (1222)
.++.++|.++....+.+.+.. +...++||+||||||||++|+++|... +..++.++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 456788998888888876652 122578999999999999999999875 45566666
Q ss_pred ccccc--cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEE
Q 000925 988 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1065 (1222)
Q Consensus 988 ~s~L~--s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIa 1065 (1222)
...+. ..|.|+.+..++.+|..+.+..++||||||||.|++.+...+.+.....++..++ .++.+.+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEe
Confidence 55554 3567888999999999998888999999999999876643232222223333332 236799999
Q ss_pred ecCCCC-----CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCCcc-----cHHHHHHHcC-----CCcHHHHH
Q 000925 1066 ATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV-----DLEGIANMAD-----GYSGSDLK 1130 (1222)
Q Consensus 1066 TTN~p~-----~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdi-----dl~~LA~~t~-----GySg~DL~ 1130 (1222)
+|+..+ ..|+++.|||. .|.|+.|+.+++..||+.+........++ .+..++..+. .+.+....
T Consensus 321 ATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred cCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 998754 67999999995 79999999999999999887664433333 2334444343 33455677
Q ss_pred HHHHHHHh
Q 000925 1131 NLCVTAAH 1138 (1222)
Q Consensus 1131 ~L~~~Aa~ 1138 (1222)
.++.+|+.
T Consensus 400 dlldea~a 407 (758)
T PRK11034 400 DVIDEAGA 407 (758)
T ss_pred HHHHHHHH
Confidence 77777764
No 83
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.57 E-value=3.4e-14 Score=180.68 Aligned_cols=212 Identities=18% Similarity=0.264 Sum_probs=140.3
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 992 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~-------- 992 (1222)
++.|++++++.+.+++.....+ .. .....+||+||||||||++|++||+.++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~--~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GK--MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 4889999999999987643221 11 1223699999999999999999999999999999875432
Q ss_pred -cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHh-----HhhhccCCcccCCCcEEEEEe
Q 000925 993 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 1066 (1222)
Q Consensus 993 -s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~-----Ll~~ldgl~~k~~~~VlVIaT 1066 (1222)
..|.|.....+.+.|..+....| ||||||||.+...... .....+..++.. |+....+... +-.++++|+|
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-~~~~aLl~~ld~~~~~~f~d~~~~~~~-d~s~v~~I~T 469 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-DPASALLEVLDPEQNNAFSDHYLDVPF-DLSKVIFIAT 469 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-CHHHHHHHhcCHHhcCccccccCCcee-ccCCEEEEEe
Confidence 24666666677788888866555 8999999999643211 111222222211 1111111111 1257899999
Q ss_pred cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh-----cccC------CcccHHHHHH-HcCCCcHHHHHHHHH
Q 000925 1067 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----EELA------SDVDLEGIAN-MADGYSGSDLKNLCV 1134 (1222)
Q Consensus 1067 TN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k-----~~l~------sdidl~~LA~-~t~GySg~DL~~L~~ 1134 (1222)
||..+.+++++++|| .+|.|+.|+.+++.+|++.++.. ..+. ++..+..|+. .+..+..++|+.++.
T Consensus 470 tN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~ 548 (775)
T TIGR00763 470 ANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIE 548 (775)
T ss_pred cCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHH
Confidence 999999999999999 58899999999999999887632 1221 2223444444 222344466666666
Q ss_pred HHHhhhhHHH
Q 000925 1135 TAAHCPIREI 1144 (1222)
Q Consensus 1135 ~Aa~~airri 1144 (1222)
..+..+.+++
T Consensus 549 ~~~~~~~~~~ 558 (775)
T TIGR00763 549 KICRKAAVKL 558 (775)
T ss_pred HHHHHHHHHH
Confidence 6555444444
No 84
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.55 E-value=6.8e-14 Score=170.85 Aligned_cols=218 Identities=22% Similarity=0.288 Sum_probs=142.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh----------CCcEEE
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 985 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~ 985 (1222)
..+|++++|.+..++.++..+.. ..+.++||+||||||||++|+++++++ +.+|+.
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 36899999999999888765421 123579999999999999999998753 368999
Q ss_pred Eecccc-------ccccccchHH----------------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHH
Q 000925 986 ISMSSI-------TSKWFGEGEK----------------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKM 1042 (1222)
Q Consensus 986 v~~s~L-------~s~~~G~se~----------------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~i 1042 (1222)
++|... ....++.... .-.+.+.. ...++|||||||.| +...+..+.++
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L-----~~~~q~~LL~~ 198 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGEL-----HPVQMNKLLKV 198 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhc---cCCcEEEEechhhC-----CHHHHHHHHHH
Confidence 998642 1111111000 00112222 23489999999998 33344444444
Q ss_pred HHhHhhhccC-----Cc------------ccCCCcEEE-EEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHh
Q 000925 1043 KNEFMVNWDG-----LR------------TKDKERVLV-LAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1104 (1222)
Q Consensus 1043 l~~Ll~~ldg-----l~------------~k~~~~VlV-IaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~ 1104 (1222)
+++....+.+ .. ...+..+.+ ++||+.++.+++++++|+ ..+.++.++.+++.+|++..++
T Consensus 199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred HHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHH
Confidence 4433222211 00 001123444 455678999999999998 4678888889999999999998
Q ss_pred hcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHH
Q 000925 1105 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAH 1183 (1222)
Q Consensus 1105 k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Al 1183 (1222)
+..+. ++..++.|+..+ .+++++.++++.|+..+..+ ....|+.+|+..++
T Consensus 278 k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~--------------------------~~~~It~~dI~~vl 329 (531)
T TIGR02902 278 KIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGE--------------------------GRKRILAEDIEWVA 329 (531)
T ss_pred HcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhC--------------------------CCcEEcHHHHHHHh
Confidence 86643 444566666655 37899999999887654321 11358888888887
Q ss_pred H
Q 000925 1184 E 1184 (1222)
Q Consensus 1184 e 1184 (1222)
.
T Consensus 330 ~ 330 (531)
T TIGR02902 330 E 330 (531)
T ss_pred C
Confidence 6
No 85
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.9e-13 Score=166.26 Aligned_cols=185 Identities=21% Similarity=0.241 Sum_probs=134.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC--------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 981 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 981 (1222)
..+|++|+|++.+++.|.+.+.. .+.++.+||+||+|+|||++|+.+|+.+++
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 46899999999999999998763 223456899999999999999999999976
Q ss_pred ---------------cEEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHH
Q 000925 982 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKM 1042 (1222)
Q Consensus 982 ---------------~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~i 1042 (1222)
.++.++... ..+-..++++.+.+.. ....|+||||+|.|- ...
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~A 140 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHA 140 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHH
Confidence 122332221 1123345555555432 234699999999982 234
Q ss_pred HHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc
Q 000925 1043 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1121 (1222)
Q Consensus 1043 l~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t 1121 (1222)
.|.|+..|+. ...+++||++|+.+..|.+++++|+ .++.|..++.++..+.++.++.++.+. ++..+..|+...
T Consensus 141 aNALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 141 FNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4566666654 3367899999999999999999999 789999999999999999888876654 334467788888
Q ss_pred CCCcHHHHHHHHHHHH
Q 000925 1122 DGYSGSDLKNLCVTAA 1137 (1222)
Q Consensus 1122 ~GySg~DL~~L~~~Aa 1137 (1222)
+|. .++..+++..+.
T Consensus 216 ~Gs-~RdALsLLdQai 230 (700)
T PRK12323 216 QGS-MRDALSLTDQAI 230 (700)
T ss_pred CCC-HHHHHHHHHHHH
Confidence 774 555556655543
No 86
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.52 E-value=2.8e-13 Score=173.10 Aligned_cols=185 Identities=19% Similarity=0.339 Sum_probs=137.3
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 986 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v 986 (1222)
-++++++|.+.....+.+.+.. +...++||+||||||||++|+.+|+.+ +..++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4677899999876666665431 122579999999999999999999886 3557888
Q ss_pred ecccccc--ccccchHHHHHHHHHHHHhc-CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEE
Q 000925 987 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1063 (1222)
Q Consensus 987 ~~s~L~s--~~~G~se~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlV 1063 (1222)
++..+.. .+.|+.+..++.+|..++.. .+.||||||||.|.+.+...+.+... .+ |.-.+ .++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~-n~---Lkp~l------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA-NL---LKPAL------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH-HH---hhHHh------hCCCeEE
Confidence 8877653 57788899999999999754 57899999999998765433322222 12 22122 2367999
Q ss_pred EEecCCC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcc----c-CCcccHHHHHHHcCCCcH
Q 000925 1064 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1064 IaTTN~p-----~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~----l-~sdidl~~LA~~t~GySg 1126 (1222)
|+||+.. ..+|++|.||| ..|.|+.|+.+++.+||+.+..... + ..+..+..++.++.+|..
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 9999753 46899999999 5899999999999999877665422 1 256678888898887743
No 87
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.52 E-value=1.8e-14 Score=168.35 Aligned_cols=216 Identities=24% Similarity=0.333 Sum_probs=157.6
Q ss_pred CccccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEe
Q 000925 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1222)
Q Consensus 447 ~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D 526 (1222)
+...++|+++... +..+..|.++...+++++++.+.. .+ ...+.|||+||+| ..+++||||+|++.++.++-+.
T Consensus 115 ~~p~~~~~di~Gl--~~~~~~l~~~i~~~~~~~~~~~~~-g~-~~p~gvLL~GppG--tGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 115 ERPNVSYEDIGGL--EEQIREIREAVELPLKHPELFEEV-GI-EPPKGVLLYGPPG--TGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred cCCCCCHHHhCCh--HHHHHHHHHHHHHHhcCHHHHHhc-CC-CCCceEEEECCCC--CCHHHHHHHHHHhCCCCEEecc
Confidence 3457889998888 999999999998899998864321 22 2346799999999 8999999999999988765543
Q ss_pred cCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccceeeec
Q 000925 527 SLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILP 606 (1222)
Q Consensus 527 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~v~~~ 606 (1222)
...+. .+|+|.
T Consensus 189 ~~~l~--------------------------------------------~~~~g~------------------------- 199 (364)
T TIGR01242 189 GSELV--------------------------------------------RKYIGE------------------------- 199 (364)
T ss_pred hHHHH--------------------------------------------HHhhhH-------------------------
Confidence 22220 012220
Q ss_pred cccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcchhh
Q 000925 607 FEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEK 686 (1222)
Q Consensus 607 ~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~die~ 686 (1222)
....+..+|+.+.. ..|.||||||+|.
T Consensus 200 --------------------------------------------------~~~~i~~~f~~a~~---~~p~il~iDEiD~ 226 (364)
T TIGR01242 200 --------------------------------------------------GARLVREIFELAKE---KAPSIIFIDEIDA 226 (364)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHh---cCCcEEEhhhhhh
Confidence 11245667777655 7899999999999
Q ss_pred hhcc--------Chh---hHHHHHHHHhcC--CCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCccc
Q 000925 687 SLTG--------NND---AYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSR 753 (1222)
Q Consensus 687 ~l~~--------~~~---~~~~l~~~L~~l--~g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~~ 753 (1222)
+... ..+ ....+-..++.+ .++|+||+++++++. +|
T Consensus 227 l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~----------------------ld--------- 275 (364)
T TIGR01242 227 IAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI----------------------LD--------- 275 (364)
T ss_pred hccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh----------------------CC---------
Confidence 6542 111 222222334444 358999999995332 22
Q ss_pred cccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHHhhhCCC-Ccccchhhhcc
Q 000925 754 LHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIK 830 (1222)
Q Consensus 754 ~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~dLe~La~~ 830 (1222)
++++| ||++.+++++|+...|.+|+++|+. ...+ .+.+++.|+..
T Consensus 276 ------------------------------~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~--~~~l~~~~~~~~la~~ 323 (364)
T TIGR01242 276 ------------------------------PALLRPGRFDRIIEVPLPDFEGRLEILKIHTR--KMKLAEDVDLEAIAKM 323 (364)
T ss_pred ------------------------------hhhcCcccCceEEEeCCcCHHHHHHHHHHHHh--cCCCCccCCHHHHHHH
Confidence 27777 8999999999999999999999964 2333 45789999999
Q ss_pred ccCCCHHHHHHHHhhhhhhhhcc
Q 000925 831 DQTLTTEGVEKIVGWALSHHFMH 853 (1222)
Q Consensus 831 tkg~sgadI~~Lv~~A~s~Al~r 853 (1222)
+.||+|+||+.+|+.|..+|+.+
T Consensus 324 t~g~sg~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 324 TEGASGADLKAICTEAGMFAIRE 346 (364)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999874
No 88
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.52 E-value=2.6e-14 Score=178.03 Aligned_cols=219 Identities=18% Similarity=0.286 Sum_probs=159.2
Q ss_pred cccCCCccccccccccccchhHHHHHHHHhhhhcccccccc-cccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCC
Q 000925 442 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 520 (1222)
Q Consensus 442 ~vv~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~-k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a 520 (1222)
....+..+.++|+++-.+ +..+.-|...... ++.++.. ... ....+.|||+||+| ..+.+|||+||++.++
T Consensus 140 ~~~~~~~~~~~~~di~g~--~~~~~~l~~i~~~-~~~~~~~~~~~---~~~~~gill~G~~G--~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 140 RMLTEDQIKTTFADVAGC--DEAKEEVAELVEY-LREPSRFQKLG---GKIPKGVLMVGPPG--TGKTLLAKAIAGEAKV 211 (644)
T ss_pred cccCchhhhCcHHHHcCH--HHHHHHHHHHHHH-hhCHHHHHhcC---CCCCCcEEEECCCC--CCHHHHHHHHHHHcCC
Confidence 344556778889988777 7888777776653 4443322 111 23346699999999 8999999999999999
Q ss_pred eEEEEecCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCcccc
Q 000925 521 RLLIVDSLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFR 600 (1222)
Q Consensus 521 ~lL~~D~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~r 600 (1222)
+++.++.++|.. .|+|..
T Consensus 212 ~f~~is~~~~~~--------------------------------------------~~~g~~------------------ 229 (644)
T PRK10733 212 PFFTISGSDFVE--------------------------------------------MFVGVG------------------ 229 (644)
T ss_pred CEEEEehHHhHH--------------------------------------------hhhccc------------------
Confidence 998887766511 122200
Q ss_pred ceeeeccccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEE
Q 000925 601 GRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVF 680 (1222)
Q Consensus 601 g~v~~~~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilf 680 (1222)
.-.+..+|+.+.. ..|+|||
T Consensus 230 ---------------------------------------------------------~~~~~~~f~~a~~---~~P~Iif 249 (644)
T PRK10733 230 ---------------------------------------------------------ASRVRDMFEQAKK---AAPCIIF 249 (644)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHh---cCCcEEE
Confidence 0034556666544 6899999
Q ss_pred Ecchhhhhcc--------C---hhhHHHHHHHHhcCCC--CEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccC
Q 000925 681 VKDIEKSLTG--------N---NDAYGALKSKLENLPS--NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAF 747 (1222)
Q Consensus 681 i~die~~l~~--------~---~~~~~~l~~~L~~l~g--~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~ 747 (1222)
|||+|.+..+ + .+..+.|-..++.+.+ +|||||++|+++.
T Consensus 250 IDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~--------------------------- 302 (644)
T PRK10733 250 IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV--------------------------- 302 (644)
T ss_pred ehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhh---------------------------
Confidence 9999996431 1 1233444444555543 7999999995443
Q ss_pred CCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHHhhhCCC-Ccccc
Q 000925 748 PDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDL 824 (1222)
Q Consensus 748 pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~dL 824 (1222)
+|. |++| ||++++++++||.++|..|++.|. ...++ .++++
T Consensus 303 ---lD~-------------------------------Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~--~~~~l~~~~d~ 346 (644)
T PRK10733 303 ---LDP-------------------------------ALLRPGRFDRQVVVGLPDVRGREQILKVHM--RRVPLAPDIDA 346 (644)
T ss_pred ---cCH-------------------------------HHhCCcccceEEEcCCCCHHHHHHHHHHHh--hcCCCCCcCCH
Confidence 332 8988 999999999999999999999994 44445 67889
Q ss_pred hhhhccccCCCHHHHHHHHhhhhhhhhcc
Q 000925 825 ESLCIKDQTLTTEGVEKIVGWALSHHFMH 853 (1222)
Q Consensus 825 e~La~~tkg~sgadI~~Lv~~A~s~Al~r 853 (1222)
..||..|.||+|+||+.+|++|+..|.+.
T Consensus 347 ~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 347 AIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999998763
No 89
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.51 E-value=2e-13 Score=150.28 Aligned_cols=189 Identities=23% Similarity=0.317 Sum_probs=140.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 995 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 995 (1222)
...|++++|+++++++|.-++.....+ .....++||+||||.|||+||..||+++|.++...+++.+.-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r---------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR---------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc---------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 357899999999999999888754333 234468999999999999999999999999998888776532
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhcc-CCccc------CCCcEEEEEecC
Q 000925 996 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTK------DKERVLVLAATN 1068 (1222)
Q Consensus 996 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ld-gl~~k------~~~~VlVIaTTN 1068 (1222)
...+..++.... ...||||||||+| ++...+.+.-.+..|...+- |-.+. +-.++-+|++|.
T Consensus 91 ----~gDlaaiLt~Le--~~DVLFIDEIHrl-----~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 91 ----PGDLAAILTNLE--EGDVLFIDEIHRL-----SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred ----hhhHHHHHhcCC--cCCeEEEehhhhc-----ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 123344444322 3479999999998 34444555555555443221 11111 125789999999
Q ss_pred CCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000925 1069 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1069 ~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg 1126 (1222)
+...|...++.||..+..+...+.++..+|+........+. .+....++|.+..|-..
T Consensus 160 r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred ccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 99999999999999999999999999999999887766554 44557789999888543
No 90
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.50 E-value=9.3e-13 Score=147.98 Aligned_cols=214 Identities=23% Similarity=0.394 Sum_probs=144.2
Q ss_pred CCcccccCcHHHHHH---HHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc---EEEEeccc
Q 000925 917 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSS 990 (1222)
Q Consensus 917 vtfddI~Gle~ik~~---L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~---fi~v~~s~ 990 (1222)
.+++|++|++.+..+ |+.++. +. ....++||||||||||+||+.|+.....+ ||.++...
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ie----------q~----~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIE----------QN----RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHH----------cC----CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 467788888766433 344443 12 23589999999999999999999988655 77776533
Q ss_pred cccccccchHHHHHHHHHHHHhc-----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEE
Q 000925 991 ITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1065 (1222)
Q Consensus 991 L~s~~~G~se~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIa 1065 (1222)
...+.++.+|+.+++. ...|||||||+++ +..+ ...|+-.+ +++.|++|+
T Consensus 201 -------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----NksQ-------QD~fLP~V------E~G~I~lIG 255 (554)
T KOG2028|consen 201 -------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----NKSQ-------QDTFLPHV------ENGDITLIG 255 (554)
T ss_pred -------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----hhhh-------hhccccee------ccCceEEEe
Confidence 2345789999988754 3589999999987 2111 12333322 447789998
Q ss_pred ec--CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh----c----cc------CCcccHHHHHHHcCCCcHHHH
Q 000925 1066 AT--NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----E----EL------ASDVDLEGIANMADGYSGSDL 1129 (1222)
Q Consensus 1066 TT--N~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k----~----~l------~sdidl~~LA~~t~GySg~DL 1129 (1222)
+| |+.+.|..++++|+ +++.+.....++-..||...+.- + .+ .++..++.|+..++|.....|
T Consensus 256 ATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL 334 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL 334 (554)
T ss_pred cccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH
Confidence 87 77789999999999 67888888888888888875541 1 11 123347889999999887777
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccccc
Q 000925 1130 KNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1193 (1222)
Q Consensus 1130 ~~L~~~Aa~~airrii~~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s~e 1193 (1222)
..|-..+.+...|. ...+...|+.+|++++++.-...+-..
T Consensus 335 N~Lems~~m~~tr~-----------------------g~~~~~~lSidDvke~lq~s~~~YDr~ 375 (554)
T KOG2028|consen 335 NALEMSLSMFCTRS-----------------------GQSSRVLLSIDDVKEGLQRSHILYDRA 375 (554)
T ss_pred HHHHHHHHHHHhhc-----------------------CCcccceecHHHHHHHHhhccceeccc
Confidence 65533322222111 111234688899999888765444333
No 91
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=4e-13 Score=165.13 Aligned_cols=185 Identities=21% Similarity=0.239 Sum_probs=133.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 46899999999999999988752 2234568999999999999999999998652
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 983 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 983 -----------fi~v~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
++.++... ..+-..++.+++.+.. ....||||||+|.|. ....+.|+
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALL 140 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAML 140 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHH
Confidence 33333221 1122345666665542 234699999999982 12334455
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg 1126 (1222)
..|+. ...++.||++||.+..|.+++++|| .++.|..++.++..++|+.++..+++. ++..+..|+...+|...
T Consensus 141 KtLEE----PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmR 215 (830)
T PRK07003 141 KTLEE----PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMR 215 (830)
T ss_pred HHHHh----cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 55443 2357899999999999999999999 689999999999999999998887654 55668888899888654
Q ss_pred HHHHHHHHHHH
Q 000925 1127 SDLKNLCVTAA 1137 (1222)
Q Consensus 1127 ~DL~~L~~~Aa 1137 (1222)
+..+++..+.
T Consensus 216 -dALsLLdQAi 225 (830)
T PRK07003 216 -DALSLTDQAI 225 (830)
T ss_pred -HHHHHHHHHH
Confidence 4444444433
No 92
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=5.1e-13 Score=159.15 Aligned_cols=183 Identities=17% Similarity=0.234 Sum_probs=131.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++++|++.+...|...+.. .+.++.+||+||+|||||++|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 46899999999999999887762 2233568999999999999999999998763
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 983 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 983 -----------fi~v~~s~L~s~~~G~se~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
++.++... ..+-..++.+...+. .....|+||||+|.|- ....+.|+
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALL 142 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALL 142 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHH
Confidence 23333211 111234555544443 2234699999999982 23445556
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg 1126 (1222)
..++. ...++++|++|+.++.+.+++++|+ .++.|..++.++-.+.++.++..+++. ++..+..|+...+|...
T Consensus 143 KtLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 143 KTLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHH
Confidence 65543 3467899999999999999999999 578899999988889999988877654 55668889988887644
Q ss_pred HHHHHHHHH
Q 000925 1127 SDLKNLCVT 1135 (1222)
Q Consensus 1127 ~DL~~L~~~ 1135 (1222)
+..++++.
T Consensus 218 -dAL~lLeq 225 (484)
T PRK14956 218 -DMLSFMEQ 225 (484)
T ss_pred -HHHHHHHH
Confidence 44444444
No 93
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=9.3e-14 Score=153.88 Aligned_cols=211 Identities=21% Similarity=0.248 Sum_probs=165.5
Q ss_pred ccccccccccchhHHHHHHHHhhhhcccccccccccC-CCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEecC
Q 000925 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYAS-DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1222)
Q Consensus 450 ~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~-~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~~ 528 (1222)
++||++.... .++.+ .|.+..-+||+.++++. + ++. .....||.||+| ..+..||+|+|...|+.+|.+-++
T Consensus 128 ~~s~~~~ggl-~~qir-elre~ielpl~np~lf~--rvgIk-~Pkg~ll~GppG--tGKTlla~~Vaa~mg~nfl~v~ss 200 (388)
T KOG0651|consen 128 NISFENVGGL-FYQIR-ELREVIELPLTNPELFL--RVGIK-PPKGLLLYGPPG--TGKTLLARAVAATMGVNFLKVVSS 200 (388)
T ss_pred ccCHHHhCCh-HHHHH-HHHhheEeeccCchhcc--ccCCC-CCceeEEeCCCC--CchhHHHHHHHHhcCCceEEeeHh
Confidence 4677776543 34444 46677889999999943 3 343 346789999999 899999999999999999999887
Q ss_pred CCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccceeeeccc
Q 000925 529 LLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFE 608 (1222)
Q Consensus 529 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~v~~~~e 608 (1222)
.|-. +|+|.+.
T Consensus 201 ~lv~--------------------------------------------kyiGEsa------------------------- 211 (388)
T KOG0651|consen 201 ALVD--------------------------------------------KYIGESA------------------------- 211 (388)
T ss_pred hhhh--------------------------------------------hhcccHH-------------------------
Confidence 7722 6777322
Q ss_pred cCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcchhhhh
Q 000925 609 DNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSL 688 (1222)
Q Consensus 609 ~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~die~~l 688 (1222)
++|.+-|.-+.. .+|+|||++|||...
T Consensus 212 --------------------------------------------------RlIRemf~yA~~---~~pciifmdeiDAig 238 (388)
T KOG0651|consen 212 --------------------------------------------------RLIRDMFRYARE---VIPCIIFMDEIDAIG 238 (388)
T ss_pred --------------------------------------------------HHHHHHHHHHhh---hCceEEeehhhhhhc
Confidence 277777777766 899999999999965
Q ss_pred c--------cChhhHHHHHHHHhcCCC-----CEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCccccc
Q 000925 689 T--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLH 755 (1222)
Q Consensus 689 ~--------~~~~~~~~l~~~L~~l~g-----~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~~~~ 755 (1222)
+ .++++-..|...|+.+.| +|-+|+++|++|. |||
T Consensus 239 GRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt----------------------Ldp---------- 286 (388)
T KOG0651|consen 239 GRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT----------------------LDP---------- 286 (388)
T ss_pred cEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc----------------------cch----------
Confidence 5 256777778888887754 9999999996554 444
Q ss_pred cccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHH-hhhCCCCcccchhhhcccc
Q 000925 756 DRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQ 832 (1222)
Q Consensus 756 ~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~-l~~~~l~~~dLe~La~~tk 832 (1222)
||+| |.++.+++|+|++.+|..|++||.. +..++- .+-+.+.....
T Consensus 287 -----------------------------aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Ge--id~eaivK~~d 335 (388)
T KOG0651|consen 287 -----------------------------ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGE--IDDEAILKLVD 335 (388)
T ss_pred -----------------------------hhcCCccccceeccCCcchhhceeeEeecccccccccc--ccHHHHHHHHh
Confidence 9999 9999999999999999999999987 555543 22466777889
Q ss_pred CCCHHHHHHHHhhhhhhhhc
Q 000925 833 TLTTEGVEKIVGWALSHHFM 852 (1222)
Q Consensus 833 g~sgadI~~Lv~~A~s~Al~ 852 (1222)
+|+|+|++..|++|--+++.
T Consensus 336 ~f~gad~rn~~tEag~Fa~~ 355 (388)
T KOG0651|consen 336 GFNGADLRNVCTEAGMFAIP 355 (388)
T ss_pred ccChHHHhhhcccccccccc
Confidence 99999999999999877764
No 94
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.47 E-value=6e-13 Score=170.28 Aligned_cols=184 Identities=22% Similarity=0.352 Sum_probs=140.1
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 987 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v~ 987 (1222)
.++.++|.++..+.+.+.+.. +..+++||+||||||||++|+++|... +.+++.++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 567899999999998887652 233689999999999999999999886 47899999
Q ss_pred ccccc--cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEE
Q 000925 988 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1065 (1222)
Q Consensus 988 ~s~L~--s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIa 1065 (1222)
+..+. ..|.|+.+..++.+|..+....+.||||||||.|++.....+.... ..++.. .+ .++.+.+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~-a~lLkp---~l------~rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDA-ANILKP---AL------ARGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccH-HHHhHH---HH------hCCCcEEEE
Confidence 88776 3678889999999999998888899999999999876543332211 122221 11 236789999
Q ss_pred ecCCCC-----CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh----ccc-CCcccHHHHHHHcCCCcH
Q 000925 1066 ATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----EEL-ASDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1066 TTN~p~-----~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k----~~l-~sdidl~~LA~~t~GySg 1126 (1222)
+|+..+ ..++++.+||. .+.+..|+.++...|++.+... ..+ .++..+..++.++.+|.+
T Consensus 313 aTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred eCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 998653 57899999995 6789999999999999876543 222 245557788888887754
No 95
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.47 E-value=1e-13 Score=158.67 Aligned_cols=207 Identities=14% Similarity=0.140 Sum_probs=145.3
Q ss_pred ccccc--cccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEecCC
Q 000925 452 SFESF--PYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1222)
Q Consensus 452 sfd~f--pyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~~~ 529 (1222)
+|++. .||+...--. -+.+|+-+.-+.- .++ ...+.+||.||+| ..+.+||||+|+++|+.++.++...
T Consensus 113 ~f~~~~g~~~~~p~f~d----k~~~hi~kn~l~~--~~i-k~PlgllL~GPPG--cGKTllAraiA~elg~~~i~vsa~e 183 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMD----KVAVHIAKNFLAL--PNI-KVPLILGIWGGKG--QGKSFQCELVFKKMGIEPIVMSAGE 183 (413)
T ss_pred chhhhcCccccCHHHHH----HHHHHHHhhhhhc--cCC-CCCeEEEeeCCCC--CCHHHHHHHHHHHcCCCeEEEEHHH
Confidence 35554 5777654322 3335655543311 121 4456788899999 9999999999999999999999987
Q ss_pred CCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccceeeecccc
Q 000925 530 LPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFED 609 (1222)
Q Consensus 530 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~v~~~~e~ 609 (1222)
|.. +|+|.+.
T Consensus 184 L~s--------------------------------------------k~vGEsE-------------------------- 193 (413)
T PLN00020 184 LES--------------------------------------------ENAGEPG-------------------------- 193 (413)
T ss_pred hhc--------------------------------------------CcCCcHH--------------------------
Confidence 733 6777322
Q ss_pred CCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhcc--CCCCeEEEEcchhhh
Q 000925 610 NDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNES--KSSPLIVFVKDIEKS 687 (1222)
Q Consensus 610 n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~es--k~~P~Ilfi~die~~ 687 (1222)
.+|.++|..+...+ +.+|+||||||||..
T Consensus 194 -------------------------------------------------k~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 194 -------------------------------------------------KLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred -------------------------------------------------HHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 27889999887764 679999999999996
Q ss_pred hccC--------hhhH-HHHHHHHhcC--------------CCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhcc
Q 000925 688 LTGN--------NDAY-GALKSKLENL--------------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLD 744 (1222)
Q Consensus 688 l~~~--------~~~~-~~l~~~L~~l--------------~g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d 744 (1222)
+.+. +++. ..|...++.+ ..+|+||+++|+++. ||
T Consensus 225 ~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~----------------------LD 282 (413)
T PLN00020 225 AGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFST----------------------LY 282 (413)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCccc----------------------CC
Confidence 6521 2332 4455555432 357999999995444 33
Q ss_pred ccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHHhhhCCCCcc
Q 000925 745 LAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCV 822 (1222)
Q Consensus 745 ~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~ 822 (1222)
+ ||+| ||++.+ .+|+.+.|.+|+++|++. .+++.+
T Consensus 283 p---------------------------------------ALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~--~~l~~~ 319 (413)
T PLN00020 283 A---------------------------------------PLIRDGRMEKFY--WAPTREDRIGVVHGIFRD--DGVSRE 319 (413)
T ss_pred H---------------------------------------hHcCCCCCCcee--CCCCHHHHHHHHHHHhcc--CCCCHH
Confidence 3 9999 999965 489999999999999654 467778
Q ss_pred cchhhhccccC----CCHHHHHHHHhhhhhhhh
Q 000925 823 DLESLCIKDQT----LTTEGVEKIVGWALSHHF 851 (1222)
Q Consensus 823 dLe~La~~tkg----~sgadI~~Lv~~A~s~Al 851 (1222)
++..|+....| |.||--+.+...++...+
T Consensus 320 dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i 352 (413)
T PLN00020 320 DVVKLVDTFPGQPLDFFGALRARVYDDEVRKWI 352 (413)
T ss_pred HHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHH
Confidence 88888888766 556555555555544443
No 96
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.46 E-value=1e-13 Score=150.16 Aligned_cols=205 Identities=24% Similarity=0.352 Sum_probs=151.8
Q ss_pred ccccccccccchhHHHHH--HHHhhhhcccccccc-cccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEe
Q 000925 450 EVSFESFPYYLSDITKNV--LIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1222)
Q Consensus 450 ~vsfd~fpyylse~tk~~--L~~~~~~hL~~~~~~-k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D 526 (1222)
++|||+.=.. |..|.- |+. -+|+.++-. +| +.+.||..||+| +.++|+|||||.+..++||.+-
T Consensus 117 ~it~ddViGq--EeAK~kcrli~---~yLenPe~Fg~W------APknVLFyGppG--TGKTm~Akalane~kvp~l~vk 183 (368)
T COG1223 117 DITLDDVIGQ--EEAKRKCRLIM---EYLENPERFGDW------APKNVLFYGPPG--TGKTMMAKALANEAKVPLLLVK 183 (368)
T ss_pred cccHhhhhch--HHHHHHHHHHH---HHhhChHHhccc------CcceeEEECCCC--ccHHHHHHHHhcccCCceEEec
Confidence 4566655444 555432 221 256776543 55 467899999999 8999999999999999999999
Q ss_pred cCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccceeeec
Q 000925 527 SLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILP 606 (1222)
Q Consensus 527 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~v~~~ 606 (1222)
++.|-| +|||.
T Consensus 184 at~liG--------------------------------------------ehVGd------------------------- 194 (368)
T COG1223 184 ATELIG--------------------------------------------EHVGD------------------------- 194 (368)
T ss_pred hHHHHH--------------------------------------------HHhhh-------------------------
Confidence 888855 35551
Q ss_pred cccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhccCCCCeEEEEcchhh
Q 000925 607 FEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEK 686 (1222)
Q Consensus 607 ~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~die~ 686 (1222)
.-..|.+||+-+.. ..|+|+|||+.|.
T Consensus 195 --------------------------------------------------gar~Ihely~rA~~---~aPcivFiDE~DA 221 (368)
T COG1223 195 --------------------------------------------------GARRIHELYERARK---AAPCIVFIDELDA 221 (368)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHh---cCCeEEEehhhhh
Confidence 22378899998877 9999999999999
Q ss_pred hhc--------c-ChhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCccccc
Q 000925 687 SLT--------G-NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLH 755 (1222)
Q Consensus 687 ~l~--------~-~~~~~~~l~~~L~~l~--g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~~~~ 755 (1222)
+-. | =.++.+.|-..|+.+. .+|+-||++|+++- ||+
T Consensus 222 iaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~----------------------LD~---------- 269 (368)
T COG1223 222 IALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL----------------------LDP---------- 269 (368)
T ss_pred hhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh----------------------cCH----------
Confidence 522 1 2455666666666553 38999999996432 444
Q ss_pred cccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhcchhhhccchhhHHHHHhhhCCC-CcccchhhhccccCC
Q 000925 756 DRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTL 834 (1222)
Q Consensus 756 ~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~dLe~La~~tkg~ 834 (1222)
|.+.||+.++||.||+.+.|..|+.-- ...-++ .+.+++.|+.+|+|+
T Consensus 270 -----------------------------aiRsRFEeEIEF~LP~~eEr~~ile~y--~k~~Plpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 270 -----------------------------AIRSRFEEEIEFKLPNDEERLEILEYY--AKKFPLPVDADLRYLAAKTKGM 318 (368)
T ss_pred -----------------------------HHHhhhhheeeeeCCChHHHHHHHHHH--HHhCCCccccCHHHHHHHhCCC
Confidence 787899999999999998888877764 444455 677899999999999
Q ss_pred CHHHHHH-HHhhhhhhhhc
Q 000925 835 TTEGVEK-IVGWALSHHFM 852 (1222)
Q Consensus 835 sgadI~~-Lv~~A~s~Al~ 852 (1222)
+|-||.+ ++..|...|+.
T Consensus 319 SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 319 SGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 9999976 56666666654
No 97
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.46 E-value=4.9e-13 Score=171.28 Aligned_cols=182 Identities=23% Similarity=0.375 Sum_probs=133.3
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 987 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v~ 987 (1222)
.+++++|.+.....+.+.+.. +..+++||+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 567899999877776665541 122579999999999999999999987 67889998
Q ss_pred ccccc--cccccchHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEE
Q 000925 988 MSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1064 (1222)
Q Consensus 988 ~s~L~--s~~~G~se~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVI 1064 (1222)
+..+. ..+.|+.+..++.+|..+.+ ..+.||||||||.|.+.....+..... .++.. .+ .++.+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~-~~lkp---~l------~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAG-NMLKP---AL------ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHH-HHhcc---hh------hcCCCeEE
Confidence 88765 35778889999999988654 468899999999998765433332222 22211 11 24789999
Q ss_pred EecCCCC-----CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-----CcccHHHHHHHcCCC
Q 000925 1065 AATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 1124 (1222)
Q Consensus 1065 aTTN~p~-----~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-----sdidl~~LA~~t~Gy 1124 (1222)
|+|+..+ .+|+++.|||+ .|.+..|+.+++..|++.+....... .+..+...+..+.+|
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 9998765 58999999996 68899999999999999887653222 233344444555444
No 98
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.46 E-value=1e-12 Score=168.63 Aligned_cols=183 Identities=21% Similarity=0.366 Sum_probs=136.8
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 987 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v~ 987 (1222)
.++.++|.+.....+.+.+.. +..+++||+||||+|||++|+++|..+ +.+++.++
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 567899999877777766541 123578999999999999999999886 67788888
Q ss_pred ccccc--cccccchHHHHHHHHHHHHhc-CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEE
Q 000925 988 MSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1064 (1222)
Q Consensus 988 ~s~L~--s~~~G~se~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVI 1064 (1222)
+..+. ..|.|+.+..++.+|..+.+. .+.||||||||.|++.....+... +.+.|...+ .++.+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d----~~~~Lk~~l------~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMD----AGNMLKPAL------ARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhH----HHHHhchhh------hcCceEEE
Confidence 87765 357788899999999998764 589999999999986443322222 222222221 23679999
Q ss_pred EecCCC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-----CcccHHHHHHHcCCCc
Q 000925 1065 AATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGYS 1125 (1222)
Q Consensus 1065 aTTN~p-----~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-----sdidl~~LA~~t~GyS 1125 (1222)
++|+.. ..+|+++.|||. .|.++.|+.+++..|++.+....... .+..+..++..+.+|.
T Consensus 307 gaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 999865 468999999995 68899999999999999887664332 3445677777777664
No 99
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.6e-12 Score=162.57 Aligned_cols=191 Identities=21% Similarity=0.196 Sum_probs=131.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEE-------EEe-
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI-------NIS- 987 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi-------~v~- 987 (1222)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+++|+.+++.-. .++
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 36899999999999999887752 123455799999999999999999999976411 000
Q ss_pred ccccccc------cc----cchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCC
Q 000925 988 MSSITSK------WF----GEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1053 (1222)
Q Consensus 988 ~s~L~s~------~~----G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl 1053 (1222)
|-.+... .+ ...-..++.+...+.. ....|+||||+|.|- ...++.|+..|..
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALLKtLEE- 145 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALLKTLEE- 145 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHHHHHhc-
Confidence 0000000 00 0122345555544432 234699999999982 3344555665554
Q ss_pred cccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHH
Q 000925 1054 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1132 (1222)
Q Consensus 1054 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L 1132 (1222)
...++++|++|+.+..|.+++++|+ .++.|..++.++..++|+.++..+.+. .+..+..|+..+.|. .+++.++
T Consensus 146 ---PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd-~R~ALnL 220 (944)
T PRK14949 146 ---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGS-MRDALSL 220 (944)
T ss_pred ---cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHH
Confidence 2356778888888889999999998 689999999999999999988876543 445578888888874 4555566
Q ss_pred HHHHH
Q 000925 1133 CVTAA 1137 (1222)
Q Consensus 1133 ~~~Aa 1137 (1222)
|..+.
T Consensus 221 LdQal 225 (944)
T PRK14949 221 TDQAI 225 (944)
T ss_pred HHHHH
Confidence 65443
No 100
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.45 E-value=7e-13 Score=154.85 Aligned_cols=178 Identities=24% Similarity=0.379 Sum_probs=128.3
Q ss_pred ccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccc-ch
Q 000925 922 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-EG 999 (1222)
Q Consensus 922 I~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s-~~~G-~s 999 (1222)
|+|++++++.+...+.....+..+.....-..+|++|||+||||||||++|+++|..++.+|+.+++..+.. .|.| ..
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 899999999998877654333222111111234589999999999999999999999999999999987763 6777 45
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 000925 1000 EKYVKAVFSLAS-------------------------------------------------------------------- 1011 (1222)
Q Consensus 1000 e~~I~~lF~~A~-------------------------------------------------------------------- 1011 (1222)
+..++.+|..|.
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 666666665550
Q ss_pred -----------------------------------------------------------------------hcCCcEEEE
Q 000925 1012 -----------------------------------------------------------------------KIAPSVVFV 1020 (1222)
Q Consensus 1012 -----------------------------------------------------------------------k~~PsILfI 1020 (1222)
..+.+||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 124579999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcc------cCCCcEEEEEec----CCCCCCcHHHHhcccccccCCCC
Q 000925 1021 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNLP 1090 (1222)
Q Consensus 1021 DEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~------k~~~~VlVIaTT----N~p~~Ld~aLlrRF~~~I~I~lP 1090 (1222)
||||.++.+..+.+....-.-+.+.|+..+.|-.. -+..++++||+. ..|.+|-|.|.-||+.++.+..+
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 333 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQAL 333 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 99999986542211111112355667777766321 123789999986 35778889999999999999999
Q ss_pred CHHHHHHHH
Q 000925 1091 DAPNREKII 1099 (1222)
Q Consensus 1091 d~eeR~eIL 1099 (1222)
+.++...||
T Consensus 334 ~~edL~rIL 342 (441)
T TIGR00390 334 TTDDFERIL 342 (441)
T ss_pred CHHHHHHHh
Confidence 999988887
No 101
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.1e-12 Score=155.40 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=128.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC--------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 981 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 981 (1222)
..+|++++|++.+++.|...+.. .+.++++||+||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 46899999999999988887652 223456999999999999999999999865
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 982 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 982 ----------~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
.++.++.+. ..+-..++.+...+... ...||||||+|.|. ...++.|+
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LL 138 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALL 138 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHH
Confidence 344454432 11233456655555432 24699999999882 11234444
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg 1126 (1222)
..++. ....+++|++|+.+..+.+++++|+ ..+.+..++.++...+++..+...++. ++..+..|+..+.|-..
T Consensus 139 k~LE~----p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR 213 (472)
T PRK14962 139 KTLEE----PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLR 213 (472)
T ss_pred HHHHh----CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 44443 2245777777777789999999999 589999999999999999988775543 55567888888776444
Q ss_pred HHHHHHHHH
Q 000925 1127 SDLKNLCVT 1135 (1222)
Q Consensus 1127 ~DL~~L~~~ 1135 (1222)
. +.++++.
T Consensus 214 ~-aln~Le~ 221 (472)
T PRK14962 214 D-ALTMLEQ 221 (472)
T ss_pred H-HHHHHHH
Confidence 3 3344433
No 102
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.44 E-value=3.2e-12 Score=151.99 Aligned_cols=181 Identities=24% Similarity=0.417 Sum_probs=127.1
Q ss_pred CCcccccCcHHHHHH---HHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000925 917 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 917 vtfddI~Gle~ik~~---L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 993 (1222)
.+|++++|++.+... |.+.+.. . ...++||+||||||||+||++||+.++.+|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~-~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------G-RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------C-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 578999999988665 7776642 1 22479999999999999999999999999999987532
Q ss_pred ccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEec--
Q 000925 994 KWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 1067 (1222)
Q Consensus 994 ~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTT-- 1067 (1222)
....++.++..+.. ....||||||||.+. .. ..+.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----~~-------~q~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----KA-------QQDALLPHVED------GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----HH-------HHHHHHHHhhc------CcEEEEEeCCC
Confidence 22345566665532 245899999999882 11 11223333322 446666654
Q ss_pred CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhc--cc--CCcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000925 1068 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE--EL--ASDVDLEGIANMADGYSGSDLKNLCVTAAH 1138 (1222)
Q Consensus 1068 N~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~--~l--~sdidl~~LA~~t~GySg~DL~~L~~~Aa~ 1138 (1222)
|....+++++++|| .++.+..++.++...+++..+... .+ .++..++.|+..+.| ..+.+.++++.++.
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~ 202 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAAL 202 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 44568999999999 789999999999999999887652 11 234456778888755 45556666666543
No 103
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.44 E-value=1.4e-12 Score=156.55 Aligned_cols=168 Identities=19% Similarity=0.290 Sum_probs=113.2
Q ss_pred ccceEECCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCC
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1030 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1030 (1222)
+.++||||+|+|||+|++++++++ +..++.+++.++...+..........-|....+ .+.+|+||||+.+.++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 469999999999999999999987 566888888877654433221111122333222 46899999999884322
Q ss_pred CCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCC---CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhh
Q 000925 1031 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1105 (1222)
Q Consensus 1031 ~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~I~lPd~eeR~eILk~lL~k 1105 (1222)
..++.+..+++.+... ...+||+++..|.. +++.+++||. ..+.+..|+.++|..|++..+..
T Consensus 228 ---~~~~~l~~~~n~l~~~---------~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 ---RTQEEFFHTFNALHEA---------GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ---HHHHHHHHHHHHHHHC---------CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1233333444444321 23456666556554 6788999995 47889999999999999999887
Q ss_pred cccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000925 1106 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1137 (1222)
Q Consensus 1106 ~~l~-sdidl~~LA~~t~GySg~DL~~L~~~Aa 1137 (1222)
..+. ++..++.||....| +.++|..++....
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~ 327 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLI 327 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHH
Confidence 5543 55668888888765 5566666655544
No 104
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=3.4e-12 Score=149.41 Aligned_cols=186 Identities=21% Similarity=0.257 Sum_probs=131.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 36899999999999999887752 2234568999999999999999999998642
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 983 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 983 -----------fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
++.++... ...-..++.+...+... ...|+||||+|.+- ....+.++
T Consensus 79 c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLL 140 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALL 140 (363)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHH
Confidence 12222110 01223466666554322 23599999999882 12233445
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l-~sdidl~~LA~~t~GySg 1126 (1222)
..++. ....+.+|++|+.++.+.+++++|+ ..+.+..|+.++..++++..++..+. .++..+..++..+.| +.
T Consensus 141 k~lEe----~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEE----PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhc----CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 44443 2346777777888888999999998 67899999999999999998888664 355567788888876 56
Q ss_pred HHHHHHHHHHHh
Q 000925 1127 SDLKNLCVTAAH 1138 (1222)
Q Consensus 1127 ~DL~~L~~~Aa~ 1138 (1222)
+++.++++.++.
T Consensus 215 R~al~~l~~~~~ 226 (363)
T PRK14961 215 RDALNLLEHAIN 226 (363)
T ss_pred HHHHHHHHHHHH
Confidence 666667666543
No 105
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.8e-12 Score=158.23 Aligned_cols=185 Identities=23% Similarity=0.245 Sum_probs=133.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC--------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 981 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 981 (1222)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 46899999999999999988762 233467899999999999999999999865
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 982 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 982 ----------~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
.++.++.+.- ..-..++.+...+.. .+..|+||||+|.|- ....+.|+
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------~~A~NALL 139 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------THSFNALL 139 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------------HHHHHHHH
Confidence 2344443221 123345666554432 234699999999882 12334455
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg 1126 (1222)
..++. ....+.+|++|+.+..+...+++|+ .++.|..++.++..+.++.++.++++. ++..+..|+..+.| +.
T Consensus 140 KtLEE----PP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 140 KTLEE----PPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SL 213 (702)
T ss_pred HHHhc----CCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55543 2356777778888888989999999 689999999999999999999887654 45567888888876 55
Q ss_pred HHHHHHHHHHH
Q 000925 1127 SDLKNLCVTAA 1137 (1222)
Q Consensus 1127 ~DL~~L~~~Aa 1137 (1222)
+++.+++..+.
T Consensus 214 RdALnLLDQaI 224 (702)
T PRK14960 214 RDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 106
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=2e-12 Score=159.53 Aligned_cols=185 Identities=23% Similarity=0.272 Sum_probs=132.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 36899999999999999987762 2233558999999999999999999998763
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 983 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 983 -----------fi~v~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
++.++... ...-..++.+...+.. ....|+||||+|.|- ....+.|+
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALL 140 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALL 140 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHH
Confidence 23333221 0122345555544432 234699999999982 23445566
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg 1126 (1222)
..+.. ...++++|++|+.+..|.+++++|+ ..+.|..++.++-...|+.++..+.+. ++..+..|+..++|..+
T Consensus 141 KtLEE----Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 141 KTLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMR 215 (647)
T ss_pred HHHHc----CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 55554 3367888888888999999999998 789999999999999999988776654 44557788888887544
Q ss_pred HHHHHHHHHHH
Q 000925 1127 SDLKNLCVTAA 1137 (1222)
Q Consensus 1127 ~DL~~L~~~Aa 1137 (1222)
+..+++..|.
T Consensus 216 -~Al~lldqai 225 (647)
T PRK07994 216 -DALSLTDQAI 225 (647)
T ss_pred -HHHHHHHHHH
Confidence 4445554443
No 107
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2.2e-12 Score=156.57 Aligned_cols=187 Identities=17% Similarity=0.177 Sum_probs=135.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 46899999999999999998862 2334568999999999999999999998653
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 983 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 983 -----------fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
++.++.+. ...-..++.+...+... ...|+||||+|.|. ....+.|+
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~a~naLL 140 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GHSFNALL 140 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HHHHHHHH
Confidence 44444321 12233456655544321 23599999999982 12344555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg 1126 (1222)
..++.. ...+.+|++|+.+..+.+.+++|+ ..+.|..++..+-...++.++.++++. ++..+..|+..+.| +.
T Consensus 141 k~LEep----p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-sl 214 (509)
T PRK14958 141 KTLEEP----PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SV 214 (509)
T ss_pred HHHhcc----CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 555542 356777878888888998999998 678899889999888899888887654 44557788888776 66
Q ss_pred HHHHHHHHHHHhh
Q 000925 1127 SDLKNLCVTAAHC 1139 (1222)
Q Consensus 1127 ~DL~~L~~~Aa~~ 1139 (1222)
+++.+++..++..
T Consensus 215 R~al~lLdq~ia~ 227 (509)
T PRK14958 215 RDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777666543
No 108
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.43 E-value=1.2e-12 Score=154.91 Aligned_cols=185 Identities=23% Similarity=0.345 Sum_probs=118.0
Q ss_pred CCCccc-ccCcHHHHHHHHHHHHccccChhhhhc--CCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000925 916 GVTFDD-IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 992 (1222)
Q Consensus 916 ~vtfdd-I~Gle~ik~~L~e~v~~pL~~pelf~k--~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 992 (1222)
...+++ |+|++.+++.|...+..++.+-..... ..+..+..++||+||||||||+||+++|..++.+|+.+++..+.
T Consensus 66 ~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~ 145 (412)
T PRK05342 66 KAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLT 145 (412)
T ss_pred HHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 334444 899999999998777544333211100 01222446799999999999999999999999999999998875
Q ss_pred c-ccccch-HHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCCCch-HH-HHHHHHHhHhhhccCCc---------c
Q 000925 993 S-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGE-HE-AMRKMKNEFMVNWDGLR---------T 1055 (1222)
Q Consensus 993 s-~~~G~s-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~-~e-~l~~il~~Ll~~ldgl~---------~ 1055 (1222)
. .|+|.. +..+..++..+ .+..++||||||||.+.....++.. .. ....+.+.|+..|++.. .
T Consensus 146 ~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~ 225 (412)
T PRK05342 146 EAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRK 225 (412)
T ss_pred cCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcC
Confidence 3 577764 33445554432 3457799999999999755322110 00 00123444555554321 1
Q ss_pred cCCCcEEEEEecCCCC----------------------------------------------------CCcHHHHhcccc
Q 000925 1056 KDKERVLVLAATNRPF----------------------------------------------------DLDEAVVRRLPR 1083 (1222)
Q Consensus 1056 k~~~~VlVIaTTN~p~----------------------------------------------------~Ld~aLlrRF~~ 1083 (1222)
......++|.|+|..+ -+.|+|+.|++.
T Consensus 226 ~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~ 305 (412)
T PRK05342 226 HPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPV 305 (412)
T ss_pred cCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCe
Confidence 1123455566655411 135677778888
Q ss_pred cccCCCCCHHHHHHHHH
Q 000925 1084 RLMVNLPDAPNREKIIR 1100 (1222)
Q Consensus 1084 ~I~I~lPd~eeR~eILk 1100 (1222)
++.|...+.++..+|+.
T Consensus 306 iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 306 VATLEELDEEALVRILT 322 (412)
T ss_pred eeecCCCCHHHHHHHHH
Confidence 88888889888888886
No 109
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.43 E-value=2.3e-12 Score=152.72 Aligned_cols=168 Identities=20% Similarity=0.300 Sum_probs=112.0
Q ss_pred ccceEECCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHH-HHHHHHHHHHhcCCcEEEEccchhhhcC
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK-YVKAVFSLASKIAPSVVFVDEVDSMLGR 1029 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~se~-~I~~lF~~A~k~~PsILfIDEID~L~~~ 1029 (1222)
+.++||||+|+|||+|+++|++++ +..++.+++.++...+...... .+. .|....+ .+.+|+||||+.+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKME-EFKEKYR-SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHH-HHHHHHH-hCCEEEEehhhhhcCC
Confidence 469999999999999999999887 5778889887765443221111 111 2222222 3579999999988532
Q ss_pred CCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC---CCcHHHHhcccc--cccCCCCCHHHHHHHHHHHHh
Q 000925 1030 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLPR--RLMVNLPDAPNREKIIRVILA 1104 (1222)
Q Consensus 1030 r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~~--~I~I~lPd~eeR~eILk~lL~ 1104 (1222)
. ..++.+..+++.+.. ....+||+++..|. .+++.+++||.. .+.++.|+.++|..|++..+.
T Consensus 215 ~---~~~~~l~~~~n~~~~---------~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 215 E---RTQEEFFHTFNALHE---------NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred H---HHHHHHHHHHHHHHH---------CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 2 123333334443321 12345555555554 356888999964 689999999999999999998
Q ss_pred hcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000925 1105 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1138 (1222)
Q Consensus 1105 k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~Aa~ 1138 (1222)
...+. ++..+..||....+ +.++|..++.....
T Consensus 283 ~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~ 316 (405)
T TIGR00362 283 EEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLA 316 (405)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 76554 56668888888765 56667666665543
No 110
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.3e-12 Score=154.68 Aligned_cols=174 Identities=21% Similarity=0.325 Sum_probs=124.7
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccc------ccc
Q 000925 920 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITS 993 (1222)
Q Consensus 920 ddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~------L~s 993 (1222)
+|-.|++++|+.+.|++.--.. .-.-..+-+.|+||||+|||++++.||..+|..|++++..- +.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL--------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL--------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh--------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 3578999999999998863111 11112234899999999999999999999999999998643 322
Q ss_pred ---ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHH-----hHhhhccCCcccCCCcEEEEE
Q 000925 994 ---KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDKERVLVLA 1065 (1222)
Q Consensus 994 ---~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~-----~Ll~~ldgl~~k~~~~VlVIa 1065 (1222)
.|+|.+...+-+.+....-..| +++|||||.+. .........++.+++. .|+.+.-.++. +-.+|++||
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG-~g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFic 559 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG-SGHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFIC 559 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC-CCCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEEE
Confidence 3788777777777777665554 88999999996 2111122223333321 23323222222 236899999
Q ss_pred ecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000925 1066 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1105 (1222)
Q Consensus 1066 TTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k 1105 (1222)
|+|..+.+++.++.|. .+|.+.=...++..+|.+.+|-.
T Consensus 560 TAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 560 TANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred eccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhh
Confidence 9999999999999999 68888888999999999988754
No 111
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.41 E-value=4.6e-13 Score=161.42 Aligned_cols=223 Identities=20% Similarity=0.273 Sum_probs=149.4
Q ss_pred CccccccccccccchhHHHHHHHHhhhhcccccccc-cccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEE
Q 000925 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1222)
Q Consensus 447 ~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~-k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~ 525 (1222)
+.-+++|++.-.+ +..+..|..+.-..+.|++.. +|+ +.+ .+.|||+|||| ..+.+||||+|++++.++..
T Consensus 175 ~~p~v~~~dIgGl--~~~i~~i~~~v~lp~~~~~l~~~~g--l~~-p~GILLyGPPG--TGKT~LAKAlA~eL~~~i~~- 246 (512)
T TIGR03689 175 EVPDVTYADIGGL--DSQIEQIRDAVELPFLHPELYREYD--LKP-PKGVLLYGPPG--CGKTLIAKAVANSLAQRIGA- 246 (512)
T ss_pred cCCCCCHHHcCCh--HHHHHHHHHHHHHHhhCHHHHHhcc--CCC-CcceEEECCCC--CcHHHHHHHHHHhhcccccc-
Confidence 4457999998888 888888888888888888764 443 444 46799999999 79999999999998765432
Q ss_pred ecCCCCCCCCCCCcccccccCCcccCCCCCCCCCccccCCCcccccCCCeeeeeeccCCCccccCCCCCCCccccceeee
Q 000925 526 DSLLLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVIL 605 (1222)
Q Consensus 526 D~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~g~~~~~~~~~~~~~~~~~g~rg~v~~ 605 (1222)
. . +.++-|+.- +++.
T Consensus 247 ------~---~------------------------------------~~~~~fl~v-----------~~~e--------- 261 (512)
T TIGR03689 247 ------E---T------------------------------------GDKSYFLNI-----------KGPE--------- 261 (512)
T ss_pred ------c---c------------------------------------CCceeEEec-----------cchh---------
Confidence 0 0 001111110 0000
Q ss_pred ccccCCCCCceeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCchhhHHHHHHHHHHHHhhcc-CCCCeEEEEcch
Q 000925 606 PFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNES-KSSPLIVFVKDI 684 (1222)
Q Consensus 606 ~~e~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~es-k~~P~Ilfi~di 684 (1222)
+ .+.|..+....+..+|+.+...+ ...|+||||||+
T Consensus 262 ----------------------------------------L---l~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEi 298 (512)
T TIGR03689 262 ----------------------------------------L---LNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEM 298 (512)
T ss_pred ----------------------------------------h---cccccchHHHHHHHHHHHHHHHhhcCCCceEEEehh
Confidence 0 00011112235667777776533 347999999999
Q ss_pred hhhhccC-----h----hhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCCCccc
Q 000925 685 EKSLTGN-----N----DAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSR 753 (1222)
Q Consensus 685 e~~l~~~-----~----~~~~~l~~~L~~l~--g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd~~~~ 753 (1222)
|.++... . .+.+.|...|+.+. ++|+|||++|+++. ||+
T Consensus 299 D~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~----------------------LDp-------- 348 (512)
T TIGR03689 299 DSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDM----------------------IDP-------- 348 (512)
T ss_pred hhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhh----------------------CCH--------
Confidence 9976521 1 23344555555554 58999999995443 343
Q ss_pred cccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhhHHHHHhhhCCCCcccchhhhccc
Q 000925 754 LHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKD 831 (1222)
Q Consensus 754 ~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~dLe~La~~t 831 (1222)
|++| ||++++++++|+.+.|.+|++.|..- .-++ + .....+
T Consensus 349 -------------------------------ALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l-~----~~l~~~ 391 (512)
T TIGR03689 349 -------------------------------AILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPL-D----ADLAEF 391 (512)
T ss_pred -------------------------------hhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCc-h----HHHHHh
Confidence 9988 99999999999999999999998421 1122 1 223346
Q ss_pred cCCCHHHHHHHHhhhhhhhhc
Q 000925 832 QTLTTEGVEKIVGWALSHHFM 852 (1222)
Q Consensus 832 kg~sgadI~~Lv~~A~s~Al~ 852 (1222)
.|+.++++.++|..+....+.
T Consensus 392 ~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 392 DGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred cCCCHHHHHHHHHHHHHHHhh
Confidence 899999999999999765554
No 112
>PRK04195 replication factor C large subunit; Provisional
Probab=99.40 E-value=4e-12 Score=154.06 Aligned_cols=186 Identities=25% Similarity=0.374 Sum_probs=130.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 995 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 995 (1222)
..+|++|+|.+++++.|..++.... + ..+++++||+||||+|||++|+++|++++++++.+++++...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~-------~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~-- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWL-------K---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT-- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHh-------c---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc--
Confidence 4679999999999999999886311 1 234578999999999999999999999999999999876432
Q ss_pred ccchHHHHHHHHHHHHh------cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCC
Q 000925 996 FGEGEKYVKAVFSLASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1069 (1222)
Q Consensus 996 ~G~se~~I~~lF~~A~k------~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~ 1069 (1222)
...+..+...+.. ..+.||+|||+|.|..... ... ++.++..+.. .+..+|+++|.
T Consensus 78 ----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~~~----~~aL~~~l~~------~~~~iIli~n~ 139 (482)
T PRK04195 78 ----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----RGG----ARAILELIKK------AKQPIILTAND 139 (482)
T ss_pred ----HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----hhH----HHHHHHHHHc------CCCCEEEeccC
Confidence 1234444333322 2467999999999853211 111 2222222321 23456667888
Q ss_pred CCCCcH-HHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHH
Q 000925 1070 PFDLDE-AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1132 (1222)
Q Consensus 1070 p~~Ld~-aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L 1132 (1222)
+..+.. .+++|+ ..+.|+.|+..+...+++.++..+++. ++..+..|+..+.|.....|..|
T Consensus 140 ~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 140 PYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred ccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 888877 566565 679999999999999999999876654 45668888888877555444444
No 113
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=6.5e-12 Score=151.95 Aligned_cols=185 Identities=19% Similarity=0.248 Sum_probs=135.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++++|++.+.+.|...+.. .+.++++||+||+|||||++|+++|+.+++.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 46899999999999999887652 2334689999999999999999999998652
Q ss_pred ---------------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHH
Q 000925 983 ---------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMK 1043 (1222)
Q Consensus 983 ---------------fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il 1043 (1222)
++.++.. ...+...++.+++.+... ...|+||||+|.|. ...+
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaa------s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~ 145 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAA------SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAF 145 (507)
T ss_pred CChHHHHHhcCCCCcEEEeecc------CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHH
Confidence 1222211 112345677777776533 24699999999882 1233
Q ss_pred HhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcC
Q 000925 1044 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMAD 1122 (1222)
Q Consensus 1044 ~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~ 1122 (1222)
+.|+..++. ....+++|++|+.+..+.+++++|+ .++.+..++.++...+++..+++++.. ++..+..|+..++
T Consensus 146 naLLk~LEe----pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 146 NALLKTLEE----PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHhh----cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 445544443 2356788878888889999999998 578899999999999999999887654 4455788888888
Q ss_pred CCcHHHHHHHHHHHH
Q 000925 1123 GYSGSDLKNLCVTAA 1137 (1222)
Q Consensus 1123 GySg~DL~~L~~~Aa 1137 (1222)
| +.+++.++++.++
T Consensus 221 G-slR~al~~Ldkai 234 (507)
T PRK06645 221 G-SARDAVSILDQAA 234 (507)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 5566666666553
No 114
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.39 E-value=3.3e-12 Score=149.34 Aligned_cols=179 Identities=22% Similarity=0.364 Sum_probs=129.0
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccc-c
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 998 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s-~~~G-~ 998 (1222)
.|+|++++++.+...+....++..+........++.+|||+||||+|||+||++||+.++.+|+.+++..+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3899999999998887643333222111111123578999999999999999999999999999999987774 5777 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 000925 999 GEKYVKAVFSLAS------------------------------------------------------------------- 1011 (1222)
Q Consensus 999 se~~I~~lF~~A~------------------------------------------------------------------- 1011 (1222)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4666666666661
Q ss_pred ---------------------------------------------------------------------h--cCCcEEEE
Q 000925 1012 ---------------------------------------------------------------------K--IAPSVVFV 1020 (1222)
Q Consensus 1012 ---------------------------------------------------------------------k--~~PsILfI 1020 (1222)
. ..-+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 13479999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhHhhhccCCccc------CCCcEEEEEec----CCCCCCcHHHHhcccccccCCCC
Q 000925 1021 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNLP 1090 (1222)
Q Consensus 1021 DEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k------~~~~VlVIaTT----N~p~~Ld~aLlrRF~~~I~I~lP 1090 (1222)
||||.++.+..+.+....-.-+.+.|+..+.|-... +..++++||+. ..|.+|-|.|.-||+.++.+..+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 999999865432211111223566777777763211 23789999986 45778889999999999999999
Q ss_pred CHHHHHHHH
Q 000925 1091 DAPNREKII 1099 (1222)
Q Consensus 1091 d~eeR~eIL 1099 (1222)
+.++...||
T Consensus 336 ~~~dL~~IL 344 (443)
T PRK05201 336 TEEDFVRIL 344 (443)
T ss_pred CHHHHHHHh
Confidence 999988887
No 115
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=5.7e-12 Score=151.49 Aligned_cols=186 Identities=21% Similarity=0.237 Sum_probs=137.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC--------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 981 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 981 (1222)
..+|+|++|++.+.+.|...+.. .+.++++||+||+|+|||++|+.+|+.+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 46899999999999999887652 234578999999999999999999997643
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 982 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 982 ----------~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
.++.++.+.- .+-..++.+.+.+... ...|+||||+|.|- ...++.|+
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLL 137 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALL 137 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHH
Confidence 3455554321 1234577777666433 24699999999882 12345556
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg 1126 (1222)
..++. ....+.+|++|+.+..+.+++++|+ ..+.+..++.++..+.++..+.+++.. ++..+..|+..+.| +.
T Consensus 138 K~LEe----Pp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 138 KTLEE----PAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred HHHhC----CCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 65554 2356788888888888999999999 678999999999999999998887654 55667888888876 56
Q ss_pred HHHHHHHHHHHh
Q 000925 1127 SDLKNLCVTAAH 1138 (1222)
Q Consensus 1127 ~DL~~L~~~Aa~ 1138 (1222)
+++.+++..++.
T Consensus 212 R~alslLdqli~ 223 (491)
T PRK14964 212 RNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 116
>PLN03025 replication factor C subunit; Provisional
Probab=99.39 E-value=6.7e-12 Score=144.35 Aligned_cols=181 Identities=23% Similarity=0.244 Sum_probs=123.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 990 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg-----~~fi~v~~s~ 990 (1222)
..+|++++|.+++.+.|+.++.. . ...++||+||||||||++|+++|+++. ..++.++.++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD----------G----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 46899999999999999886642 1 123699999999999999999999972 2356666554
Q ss_pred cccccccchHHHHHHHHHHH-Hh------cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEE
Q 000925 991 ITSKWFGEGEKYVKAVFSLA-SK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1063 (1222)
Q Consensus 991 L~s~~~G~se~~I~~lF~~A-~k------~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlV 1063 (1222)
..+ ...++...... .. ....||+|||+|.|. ...+..+.++ ++.. ...+.+
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----~~aq~aL~~~-------lE~~----~~~t~~ 132 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----SGAQQALRRT-------MEIY----SNTTRF 132 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----HHHHHHHHHH-------Hhcc----cCCceE
Confidence 321 12233332221 11 235799999999983 2223333222 2211 133557
Q ss_pred EEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 000925 1064 LAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1134 (1222)
Q Consensus 1064 IaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L~~ 1134 (1222)
|.+||....+.+++++|+ ..+.|..|+.++....++..+.++++. ++..+..|+....|-. +.+.+.++
T Consensus 133 il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDl-R~aln~Lq 202 (319)
T PLN03025 133 ALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDM-RQALNNLQ 202 (319)
T ss_pred EEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHH
Confidence 778888888999999998 589999999999999999998887654 5566788888777643 33334444
No 117
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=4.9e-12 Score=149.16 Aligned_cols=192 Identities=16% Similarity=0.225 Sum_probs=126.7
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEE-------------
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI------------- 984 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi------------- 984 (1222)
.|++|+|++.+++.|++.+......+..+ + .+.++++||+||+|+|||++|+++|+.+.+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 58899999999999999997543322111 1 123567999999999999999999998754310
Q ss_pred --EEecccccc---ccccchHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcc
Q 000925 985 --NISMSSITS---KWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1055 (1222)
Q Consensus 985 --~v~~s~L~s---~~~G~se~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~ 1055 (1222)
.-+.+++.- ......-..++.++..+...+ ..|+||||+|.|. ....+.|+..++..
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~------------~~aanaLLk~LEep-- 144 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT------------ERAANALLKAVEEP-- 144 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC------------HHHHHHHHHHhhcC--
Confidence 000111100 000112345788888776532 3599999999982 11234555555442
Q ss_pred cCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHH
Q 000925 1056 KDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCV 1134 (1222)
Q Consensus 1056 k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~ 1134 (1222)
..++++|.+|+.++.+.+++++|+ ..+.|+.|+.++..+++.. +..+ +......++..+.|..+..+..+..
T Consensus 145 --~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~---~~~~-~~~~a~~la~~s~G~~~~A~~l~~~ 216 (394)
T PRK07940 145 --PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR---RDGV-DPETARRAARASQGHIGRARRLATD 216 (394)
T ss_pred --CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH---hcCC-CHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 234555555555899999999999 6899999999887777653 2232 3445678889999988877665544
No 118
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.4e-12 Score=157.63 Aligned_cols=172 Identities=23% Similarity=0.327 Sum_probs=126.5
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccc------ccc-
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITS- 993 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~------L~s- 993 (1222)
|-.|++++|+.+.+++.-.... ..+ ...-++|+||||+|||+|++.||+.++..|++++..- +.+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~------~~~--kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT------KKL--KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh------ccC--CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 5689999999999998642221 111 1124899999999999999999999999999998744 332
Q ss_pred --ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHH-----hHhhhccCCcccCCCcEEEEEe
Q 000925 994 --KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDKERVLVLAA 1066 (1222)
Q Consensus 994 --~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~-----~Ll~~ldgl~~k~~~~VlVIaT 1066 (1222)
.|+|.....+-+-...|....| +++|||||.|... .......++.+++. .|..+.-.+.. +-.+|++|+|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~y-DLS~VmFiaT 472 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPY-DLSKVMFIAT 472 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCcc-chhheEEEee
Confidence 3788887788888888877665 8899999999532 22223333433332 23332222222 1267999999
Q ss_pred cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHh
Q 000925 1067 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1104 (1222)
Q Consensus 1067 TN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~ 1104 (1222)
+|..+.++..++.|. .+|.+.-.+.++..+|.+.+|-
T Consensus 473 ANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 473 ANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred cCccccCChHHhcce-eeeeecCCChHHHHHHHHHhcc
Confidence 999999999999999 6899999999999999988763
No 119
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=6.5e-12 Score=154.58 Aligned_cols=186 Identities=23% Similarity=0.279 Sum_probs=135.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 46899999999999999998763 2344679999999999999999999998653
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 983 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 983 -----------fi~v~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
++.++.+. ..+...++.++..+.. ....||||||+|.|- ....+.|+
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALL 140 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAML 140 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHH
Confidence 12222111 1223456777665532 233699999999872 12334555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg 1126 (1222)
..+.. ....+.+|++|+.+..+...+++|+ ..+.|..++.++-..+++.++.++++. ++..+..|+..+.| +.
T Consensus 141 KtLEE----Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-sl 214 (709)
T PRK08691 141 KTLEE----PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SM 214 (709)
T ss_pred HHHHh----CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CH
Confidence 55543 2356788888888999999999998 678888999999999999999987654 45557888888865 56
Q ss_pred HHHHHHHHHHHh
Q 000925 1127 SDLKNLCVTAAH 1138 (1222)
Q Consensus 1127 ~DL~~L~~~Aa~ 1138 (1222)
+++.+++..+..
T Consensus 215 RdAlnLLDqaia 226 (709)
T PRK08691 215 RDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHH
Confidence 677777766554
No 120
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.38 E-value=2.8e-11 Score=140.83 Aligned_cols=202 Identities=18% Similarity=0.227 Sum_probs=127.4
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhC---------CcEEEEeccc
Q 000925 920 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 990 (1222)
Q Consensus 920 ddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg---------~~fi~v~~s~ 990 (1222)
+++.|.++..+.|...+...+. + ..+..++|+||||||||++++++++++. +.++.++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-------~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-------G---SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-------C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4789999999999887753221 1 1235799999999999999999998762 5788899865
Q ss_pred cccc----------cc--c--------chHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhh
Q 000925 991 ITSK----------WF--G--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1049 (1222)
Q Consensus 991 L~s~----------~~--G--------~se~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ 1049 (1222)
..+. .. + ........++..... ..+.||+|||+|.|.... + .++..++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~----~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----D----DLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----c----HHHHhHhcc
Confidence 3221 10 1 012234445554433 346799999999996211 1 133344332
Q ss_pred ccCCcccCCCcEEEEEecCCCC---CCcHHHHhccc-ccccCCCCCHHHHHHHHHHHHhh---cccCCcccHHHHHH---
Q 000925 1050 WDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIAN--- 1119 (1222)
Q Consensus 1050 ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~-~~I~I~lPd~eeR~eILk~lL~k---~~l~sdidl~~LA~--- 1119 (1222)
+.. ....+.++.+|+++|.+. .+++.+.+||. ..+.+++++.++..+|++..+.. ....++..+..++.
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 111236789999998875 57788888885 57899999999999999998863 11222333344443
Q ss_pred HcCCCcHHHHHHHHHHHHhhhhH
Q 000925 1120 MADGYSGSDLKNLCVTAAHCPIR 1142 (1222)
Q Consensus 1120 ~t~GySg~DL~~L~~~Aa~~air 1142 (1222)
.+.|... ...++|..|+..+..
T Consensus 235 ~~~Gd~R-~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 235 QEHGDAR-KAIDLLRVAGEIAER 256 (365)
T ss_pred HhcCCHH-HHHHHHHHHHHHHHH
Confidence 3445433 445566676655443
No 121
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.2e-11 Score=152.34 Aligned_cols=186 Identities=20% Similarity=0.245 Sum_probs=133.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++|+|++.+.+.|...+.. .+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 36899999999999999998763 2233568999999999999999999998652
Q ss_pred ----------------EEEEeccccccccccchHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchHHHHHHH
Q 000925 983 ----------------FINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKM 1042 (1222)
Q Consensus 983 ----------------fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~l~~i 1042 (1222)
++.++... ..+-..++.+...+.... -.|+||||+|.|. ...
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a 140 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTA 140 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHH
Confidence 22222211 112335666666553322 3599999999982 123
Q ss_pred HHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc
Q 000925 1043 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1121 (1222)
Q Consensus 1043 l~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t 1121 (1222)
.+.|+..++. ....+.+|++|+.+..+...+++|+ .++.|..++.++..+.++..+.++++. ++..+..|+..+
T Consensus 141 ~NaLLKtLEE----PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE----PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc----CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4555555544 2356777777788888988999998 689999999999999999988887654 445578888888
Q ss_pred CCCcHHHHHHHHHHHHh
Q 000925 1122 DGYSGSDLKNLCVTAAH 1138 (1222)
Q Consensus 1122 ~GySg~DL~~L~~~Aa~ 1138 (1222)
.| +.+++.+++..+..
T Consensus 216 ~G-slR~al~lLdq~ia 231 (618)
T PRK14951 216 RG-SMRDALSLTDQAIA 231 (618)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 77 56666666655543
No 122
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.35 E-value=4.6e-11 Score=140.61 Aligned_cols=201 Identities=16% Similarity=0.206 Sum_probs=127.8
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh-----CCcEEEEecccccc
Q 000925 919 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS 993 (1222)
Q Consensus 919 fddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s 993 (1222)
.+.+.|.++..+.|...+...+. ...+.+++|+||||||||++++.+++++ ++.++.++|....+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 34688999988888887753111 1123569999999999999999999887 57889999864321
Q ss_pred ----------cccc--------chHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCc
Q 000925 994 ----------KWFG--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1054 (1222)
Q Consensus 994 ----------~~~G--------~se~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~ 1054 (1222)
...+ ..+..+..++..... ..+.||+|||+|.+..... . ..+..++..+....
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~----~----~~l~~l~~~~~~~~ 170 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG----N----DVLYSLLRAHEEYP 170 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC----c----hHHHHHHHhhhccC
Confidence 1111 112333444444333 3457999999999862111 1 23444444443321
Q ss_pred ccCCCcEEEEEecCCC---CCCcHHHHhccc-ccccCCCCCHHHHHHHHHHHHhhc---ccCCcccHHHHHHHcCCCc--
Q 000925 1055 TKDKERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGYS-- 1125 (1222)
Q Consensus 1055 ~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~-~~I~I~lPd~eeR~eILk~lL~k~---~l~sdidl~~LA~~t~GyS-- 1125 (1222)
..++.+|+++|.. +.+++.+.+||. ..+.++.++.++..+|++..+... ...++..++.++..+.+.+
T Consensus 171 ---~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 171 ---GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred ---CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 2368888888765 356788888774 568999999999999999887642 1234455677777774322
Q ss_pred HHHHHHHHHHHHhhh
Q 000925 1126 GSDLKNLCVTAAHCP 1140 (1222)
Q Consensus 1126 g~DL~~L~~~Aa~~a 1140 (1222)
.+.+..+|..|+..+
T Consensus 248 ~r~a~~ll~~a~~~a 262 (394)
T PRK00411 248 ARVAIDLLRRAGLIA 262 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 233445666655444
No 123
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.34 E-value=2.4e-11 Score=145.50 Aligned_cols=167 Identities=15% Similarity=0.248 Sum_probs=109.8
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1032 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1032 (1222)
++++||||+|+|||+|++++++++ +..++.+++..+...+.......-...|....+ ...+|+||||+.+.++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh--
Confidence 569999999999999999999886 688888887665443221111111123443332 46899999999884322
Q ss_pred CchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCC---CCCcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhcc
Q 000925 1033 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP---FDLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEE 1107 (1222)
Q Consensus 1033 ~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~--~~I~I~lPd~eeR~eILk~lL~k~~ 1107 (1222)
..++.+..+++.+... .+.+|++++..| ..+++.+++||. ..+.+..|+.++|..|++..+....
T Consensus 219 -~~qeelf~l~N~l~~~---------~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 219 -ATQEEFFHTFNSLHTE---------GKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred -hhHHHHHHHHHHHHHC---------CCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 2344455555554421 234555554444 356789999995 5788888999999999999988765
Q ss_pred cC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 000925 1108 LA-SDVDLEGIANMADGYSGSDLKNLCVTA 1136 (1222)
Q Consensus 1108 l~-sdidl~~LA~~t~GySg~DL~~L~~~A 1136 (1222)
+. ++..++.|+....+ +.++|...+...
T Consensus 289 ~~l~~evl~~la~~~~~-dir~L~g~l~~l 317 (445)
T PRK12422 289 IRIEETALDFLIEALSS-NVKSLLHALTLL 317 (445)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 43 45556677777664 344555555444
No 124
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=1.9e-11 Score=155.08 Aligned_cols=183 Identities=19% Similarity=0.168 Sum_probs=126.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|||||++|+.||+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 46899999999999999988762 2233568999999999999999999999652
Q ss_pred -------------EEEEeccccccccccchHHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHh
Q 000925 983 -------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1045 (1222)
Q Consensus 983 -------------fi~v~~s~L~s~~~G~se~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~ 1045 (1222)
|+.++.... ..-..++.+...+ ......|+||||+|.|. ....+.
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~a~Na 139 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQGFNA 139 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HHHHHH
Confidence 222222110 1123344443333 22344699999999982 223445
Q ss_pred HhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCC
Q 000925 1046 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1124 (1222)
Q Consensus 1046 Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~Gy 1124 (1222)
|+..|+.. ...++||++|+.++.|.++|++|+ .++.|..++.++..++|+.++.++++. ++..+..|+....|
T Consensus 140 LLK~LEEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG- 213 (824)
T PRK07764 140 LLKIVEEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG- 213 (824)
T ss_pred HHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 55555543 356788888888888999999998 688999999999999999998877654 34446667777665
Q ss_pred cHHHHHHHHHH
Q 000925 1125 SGSDLKNLCVT 1135 (1222)
Q Consensus 1125 Sg~DL~~L~~~ 1135 (1222)
+.+++.++++.
T Consensus 214 dlR~Al~eLEK 224 (824)
T PRK07764 214 SVRDSLSVLDQ 224 (824)
T ss_pred CHHHHHHHHHH
Confidence 44444444443
No 125
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=1.8e-11 Score=149.47 Aligned_cols=166 Identities=20% Similarity=0.303 Sum_probs=112.4
Q ss_pred ccceEECCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCC
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1030 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1030 (1222)
+.++|||++|+|||+|+++|++++ +..++++++.++...+...........|....+ ...+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 359999999999999999999986 578899998887665443222212223443333 46899999999885332
Q ss_pred CCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCC-C---CCCcHHHHhcccc--cccCCCCCHHHHHHHHHHHHh
Q 000925 1031 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-P---FDLDEAVVRRLPR--RLMVNLPDAPNREKIIRVILA 1104 (1222)
Q Consensus 1031 ~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~-p---~~Ld~aLlrRF~~--~I~I~lPd~eeR~eILk~lL~ 1104 (1222)
..++.+..+++.+... .+-+|| |++. + ..+++.|++||.. ++.|..|+.+.|.+||+..+.
T Consensus 394 ---~tqeeLF~l~N~l~e~---------gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 ---STQEEFFHTFNTLHNA---------NKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred ---HHHHHHHHHHHHHHhc---------CCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 2234455555555421 233444 5543 3 3577899999954 568888999999999999988
Q ss_pred hcccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 000925 1105 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1136 (1222)
Q Consensus 1105 k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~A 1136 (1222)
...+. ++..++.|+....+ +.++|..++...
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 76655 55567778877664 456666655543
No 126
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.33 E-value=4.3e-11 Score=138.67 Aligned_cols=186 Identities=26% Similarity=0.337 Sum_probs=131.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++++|++.+++.|.+.+.. .+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46899999999999999987752 2234579999999999999999999987432
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 983 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 983 -----------fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
++.++... ......++.++..+... ...||+|||+|.+. ....+.++
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll 138 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALL 138 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHH
Confidence 23333221 11233466777766543 23599999999882 12334555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg 1126 (1222)
..++.. ...+++|++|+.+..+.+++++|+ ..+.+..|+.++..++++.++++.++. ++..+..|+..+.| +.
T Consensus 139 ~~le~~----~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~ 212 (355)
T TIGR02397 139 KTLEEP----PEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SL 212 (355)
T ss_pred HHHhCC----ccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-Ch
Confidence 555442 245777778888888889999998 578999999999999999998876643 44556777877765 55
Q ss_pred HHHHHHHHHHHh
Q 000925 1127 SDLKNLCVTAAH 1138 (1222)
Q Consensus 1127 ~DL~~L~~~Aa~ 1138 (1222)
+.+.+.++.+..
T Consensus 213 ~~a~~~lekl~~ 224 (355)
T TIGR02397 213 RDALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHHHHh
Confidence 556566555443
No 127
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.33 E-value=6.1e-11 Score=128.72 Aligned_cols=186 Identities=19% Similarity=0.228 Sum_probs=117.8
Q ss_pred CCCccccc--CcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000925 916 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 990 (1222)
Q Consensus 916 ~vtfddI~--Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~ 990 (1222)
..+|+++. +.....+.+++.+. ...+..++|+||+|||||+||+++++++ +.+++.+++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA--------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh--------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 35677754 45566777776543 1223579999999999999999999887 57888899877
Q ss_pred cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCC
Q 000925 991 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1070 (1222)
Q Consensus 991 L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p 1070 (1222)
+.... ..++.... ...+|||||+|.+-... ..++.+..+++.+. . ....+|+.++..+
T Consensus 77 ~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---~~~~~L~~~l~~~~----~-----~~~~iIits~~~~ 134 (226)
T TIGR03420 77 LAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---EWQEALFHLYNRVR----E-----AGGRLLIAGRAAP 134 (226)
T ss_pred HHHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---HHHHHHHHHHHHHH----H-----cCCeEEEECCCCh
Confidence 65321 22333222 24699999999872110 11233333333221 1 1223444444344
Q ss_pred CCC---cHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000925 1071 FDL---DEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1138 (1222)
Q Consensus 1071 ~~L---d~aLlrRF~--~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~Aa~ 1138 (1222)
..+ .+.+.+||. ..+.++.|+.+++..+++.++.+..+. ++..+..|+.. -+.+.+++.++++.+..
T Consensus 135 ~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 135 AQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDR 207 (226)
T ss_pred HHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 333 277888874 678899999999999999887655433 44556777775 34577788888776543
No 128
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.33 E-value=3.4e-11 Score=137.66 Aligned_cols=157 Identities=21% Similarity=0.268 Sum_probs=108.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 995 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 995 (1222)
..+|++++|.+.+++.+...+.. ...++.+||+||||+|||++|++++++++.+++.+++.+ ..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 46899999999999999987752 122345677999999999999999999999999999876 21
Q ss_pred ccchHHHHHHHHHHHH-hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCc
Q 000925 996 FGEGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1074 (1222)
Q Consensus 996 ~G~se~~I~~lF~~A~-k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1074 (1222)
.......+..+..... ...+.||||||+|.+. .... ...+..++ +.. ...+.+|++||.+..+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----~~~~----~~~L~~~l---e~~----~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----LADA----QRHLRSFM---EAY----SKNCSFIITANNKNGII 145 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----CHHH----HHHHHHHH---Hhc----CCCceEEEEcCChhhch
Confidence 1111111222111111 1246899999999872 1111 12222222 221 24567888999999999
Q ss_pred HHHHhcccccccCCCCCHHHHHHHHHHHHh
Q 000925 1075 EAVVRRLPRRLMVNLPDAPNREKIIRVILA 1104 (1222)
Q Consensus 1075 ~aLlrRF~~~I~I~lPd~eeR~eILk~lL~ 1104 (1222)
+++++|| ..+.++.|+.+++..+++.++.
T Consensus 146 ~~l~sR~-~~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 146 EPLRSRC-RVIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred HHHHhhc-eEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999 5788999999999988776544
No 129
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.33 E-value=1.3e-11 Score=145.67 Aligned_cols=184 Identities=22% Similarity=0.342 Sum_probs=116.8
Q ss_pred Cccc-ccCcHHHHHHHHHHHHccccChhhh-hc---CCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000925 918 TFDD-IGALENVKDTLKELVMLPLQRPELF-CK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 992 (1222)
Q Consensus 918 tfdd-I~Gle~ik~~L~e~v~~pL~~pelf-~k---~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 992 (1222)
.+++ ++|++++++.+...+.....+-... .. .++.....++||+||||||||++|+++|..++.+|..+++..+.
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence 4444 7999999999987774322221110 00 01111235799999999999999999999999999999988765
Q ss_pred c-ccccch-HHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCCCchH-HH-HHHHHHhHhhhccCCcc---------
Q 000925 993 S-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEH-EA-MRKMKNEFMVNWDGLRT--------- 1055 (1222)
Q Consensus 993 s-~~~G~s-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~~-e~-l~~il~~Ll~~ldgl~~--------- 1055 (1222)
. .|+|.. +..+..++..+ ....++||||||||.+..++.++... .. -..+.+.|+..++|...
T Consensus 154 ~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~ 233 (413)
T TIGR00382 154 EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRK 233 (413)
T ss_pred ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCcc
Confidence 3 477764 34445544432 34567899999999997643322110 00 01234445555544321
Q ss_pred cCCCcEEEEEecCCCC--------------------------------------------------CCcHHHHhcccccc
Q 000925 1056 KDKERVLVLAATNRPF--------------------------------------------------DLDEAVVRRLPRRL 1085 (1222)
Q Consensus 1056 k~~~~VlVIaTTN~p~--------------------------------------------------~Ld~aLlrRF~~~I 1085 (1222)
.+..+.++|.|+|-.+ .+.|+|+.|++.++
T Consensus 234 ~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv 313 (413)
T TIGR00382 234 HPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIA 313 (413)
T ss_pred ccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEe
Confidence 1234577888877510 03366666888888
Q ss_pred cCCCCCHHHHHHHHHH
Q 000925 1086 MVNLPDAPNREKIIRV 1101 (1222)
Q Consensus 1086 ~I~lPd~eeR~eILk~ 1101 (1222)
.|...+.++..+|+..
T Consensus 314 ~f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 314 TLEKLDEEALIAILTK 329 (413)
T ss_pred ecCCCCHHHHHHHHHH
Confidence 8888888888888765
No 130
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=3e-11 Score=148.18 Aligned_cols=181 Identities=21% Similarity=0.268 Sum_probs=127.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++|+|++.+++.|..++.. .+-+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 46899999999999999998762 1223579999999999999999999998653
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 983 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 983 -----------fi~v~~s~L~s~~~G~se~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
++.++... ...-..++.+...+. .....||||||+|.|- ....+.|+
T Consensus 79 C~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLL 140 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALL 140 (624)
T ss_pred HHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHH
Confidence 33333211 011223344333222 2234699999999982 22345555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l-~sdidl~~LA~~t~GySg 1126 (1222)
..++. ....+++|++|+.+..+...+++|+ .++.|..++.++...+|+..+.++.+ .++..+..|+..+.|...
T Consensus 141 k~LEE----P~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR 215 (624)
T PRK14959 141 KTLEE----PPARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVR 215 (624)
T ss_pred HHhhc----cCCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 55544 2256788888888888989999998 57899999999999999988887665 355667888888887555
Q ss_pred HHHHHH
Q 000925 1127 SDLKNL 1132 (1222)
Q Consensus 1127 ~DL~~L 1132 (1222)
.-+..|
T Consensus 216 ~Al~lL 221 (624)
T PRK14959 216 DSMSLL 221 (624)
T ss_pred HHHHHH
Confidence 444433
No 131
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=2.5e-11 Score=149.16 Aligned_cols=184 Identities=25% Similarity=0.331 Sum_probs=132.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC--------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 981 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 981 (1222)
..+|++++|++.+.+.|...+.. .+.++.+||+||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 46899999999999999998762 233466899999999999999999998753
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 982 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 982 ----------~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
+++.++.+. ..+-..++.+...+... ...|+||||+|.|. ....+.|+
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLL 140 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALL 140 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 234444321 12344567777666532 24699999999882 12345555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg 1126 (1222)
..+.. .+..+++|.+|+.++.+.+++++|+ ..+.|..|+..+...+++.++.+.++. ++..+..|+....| +.
T Consensus 141 KtLEe----pp~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~ 214 (559)
T PRK05563 141 KTLEE----PPAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GM 214 (559)
T ss_pred HHhcC----CCCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55554 2356777777788899999999998 478899999999999999998887654 44557778888776 45
Q ss_pred HHHHHHHHHH
Q 000925 1127 SDLKNLCVTA 1136 (1222)
Q Consensus 1127 ~DL~~L~~~A 1136 (1222)
++..+++..+
T Consensus 215 R~al~~Ldq~ 224 (559)
T PRK05563 215 RDALSILDQA 224 (559)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 132
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.32 E-value=3.8e-11 Score=137.93 Aligned_cols=188 Identities=21% Similarity=0.246 Sum_probs=122.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 990 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg-----~~fi~v~~s~ 990 (1222)
..+|++++|.+.+++.|..++.. . . ..++||+||||||||++|+++++++. .+++.+++.+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~----------~---~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS----------P---N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC----------C---C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 35789999999999999887652 1 1 13699999999999999999999883 3567888766
Q ss_pred ccccc-------------ccc-------hHHHHHHHHHHHHhc-----CCcEEEEccchhhhcCCCCCchHHHHHHHHHh
Q 000925 991 ITSKW-------------FGE-------GEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1045 (1222)
Q Consensus 991 L~s~~-------------~G~-------se~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~ 1045 (1222)
+.... .+. ....++.+....... .+.+|||||+|.+. ...+. .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----~~~~~-------~ 144 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----EDAQQ-------A 144 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----HHHHH-------H
Confidence 43211 010 112333333333222 24699999999872 11111 2
Q ss_pred HhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCC
Q 000925 1046 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1124 (1222)
Q Consensus 1046 Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~Gy 1124 (1222)
|...++... ....+|.+++.+..+.+.+.+|+ ..+.+..|+.++...+++..+.+.++. ++..+..|+..+.|
T Consensus 145 L~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g- 218 (337)
T PRK12402 145 LRRIMEQYS----RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG- 218 (337)
T ss_pred HHHHHHhcc----CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 222222211 22445556666667778888887 578899999999999999988876654 55667788887744
Q ss_pred cHHHHHHHHHH
Q 000925 1125 SGSDLKNLCVT 1135 (1222)
Q Consensus 1125 Sg~DL~~L~~~ 1135 (1222)
+.+++.+.++.
T Consensus 219 dlr~l~~~l~~ 229 (337)
T PRK12402 219 DLRKAILTLQT 229 (337)
T ss_pred CHHHHHHHHHH
Confidence 34444444443
No 133
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.32 E-value=5.1e-11 Score=149.65 Aligned_cols=182 Identities=20% Similarity=0.357 Sum_probs=123.5
Q ss_pred CCCcccccCcHHHHH---HHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000925 916 GVTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 992 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~---~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 992 (1222)
..+|++++|++.+.. .|++.+.. . ...++||+||||||||+||++||+..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~----------~----~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA----------D----RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 368999999998875 45554431 1 22479999999999999999999999999998887531
Q ss_pred cccccchHHHHHHHHHHHH-----hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEec
Q 000925 993 SKWFGEGEKYVKAVFSLAS-----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1067 (1222)
Q Consensus 993 s~~~G~se~~I~~lF~~A~-----k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTT 1067 (1222)
..+.++.++..+. .....||||||||.|- ...+. .|+..+. ...+++|++|
T Consensus 89 ------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----~~qQd-------aLL~~lE------~g~IiLI~aT 144 (725)
T PRK13341 89 ------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----KAQQD-------ALLPWVE------NGTITLIGAT 144 (725)
T ss_pred ------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----HHHHH-------HHHHHhc------CceEEEEEec
Confidence 1122334443331 1235799999999882 11122 2222222 2456777665
Q ss_pred --CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh-------ccc-CCcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000925 1068 --NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-------EEL-ASDVDLEGIANMADGYSGSDLKNLCVTAA 1137 (1222)
Q Consensus 1068 --N~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k-------~~l-~sdidl~~LA~~t~GySg~DL~~L~~~Aa 1137 (1222)
|....+++++++|+ .++.++.++.+++..+++.++.. ..+ .++..++.|+....| ..+.+.++++.|+
T Consensus 145 Tenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 145 TENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred CCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33467889999997 57899999999999999998873 222 244557788887755 4666777777665
Q ss_pred h
Q 000925 1138 H 1138 (1222)
Q Consensus 1138 ~ 1138 (1222)
.
T Consensus 223 ~ 223 (725)
T PRK13341 223 E 223 (725)
T ss_pred H
Confidence 3
No 134
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.31 E-value=1.1e-10 Score=127.60 Aligned_cols=178 Identities=19% Similarity=0.215 Sum_probs=112.1
Q ss_pred CCCccccc--CcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000925 916 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 990 (1222)
Q Consensus 916 ~vtfddI~--Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~ 990 (1222)
..+|+++. +.+.+...++++... ......++|+||+|||||+||+++++++ +.+++.+++..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 46788854 345555666554431 1223579999999999999999999876 67888888766
Q ss_pred cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCc-EEEEEecCC
Q 000925 991 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 1069 (1222)
Q Consensus 991 L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~-VlVIaTTN~ 1069 (1222)
+... + .......+|+|||+|.+- ...+..+..+++.+. .... +++++++..
T Consensus 81 ~~~~------------~--~~~~~~~~liiDdi~~l~-----~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDDVERLD-----DAQQIALFNLFNRVR---------AHGQGALLVAGPAA 132 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeChhhcC-----chHHHHHHHHHHHHH---------HcCCcEEEEeCCCC
Confidence 4321 1 112245799999999872 222333333333321 1133 344444433
Q ss_pred C--CCCcHHHHhcc--cccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 000925 1070 P--FDLDEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1135 (1222)
Q Consensus 1070 p--~~Ld~aLlrRF--~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~ 1135 (1222)
+ ..+.+.+++|| ...+.++.|+.+++..+++.+.....+. ++..++.|+....| +.+++..+++.
T Consensus 133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 3 24568888887 4578899999888888988877665443 44556777775443 56666666655
No 135
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=3.2e-11 Score=148.03 Aligned_cols=183 Identities=19% Similarity=0.199 Sum_probs=127.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|||||++|+++|+.+++.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 46899999999999999998762 2334558999999999999999999988642
Q ss_pred -------------EEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHh
Q 000925 983 -------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1045 (1222)
Q Consensus 983 -------------fi~v~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~ 1045 (1222)
++.++.+.. .+-..++.+...+.. ....|+||||+|.|- ....+.
T Consensus 76 C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NA 137 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNA 137 (584)
T ss_pred HHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHH
Confidence 222222110 123345555444422 233699999999882 124455
Q ss_pred HhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCC
Q 000925 1046 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1124 (1222)
Q Consensus 1046 Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~Gy 1124 (1222)
|+..+.. ....+++|++|+.++.+.+++++|+ .++.|..++.++..++++.++.++++. ++..+..++....|
T Consensus 138 LLK~LEE----pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G- 211 (584)
T PRK14952 138 LLKIVEE----PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG- 211 (584)
T ss_pred HHHHHhc----CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 5666554 2357888888888899999999997 689999999999999999988887653 44456667666665
Q ss_pred cHHHHHHHHHH
Q 000925 1125 SGSDLKNLCVT 1135 (1222)
Q Consensus 1125 Sg~DL~~L~~~ 1135 (1222)
+.+++.++++.
T Consensus 212 dlR~aln~Ldq 222 (584)
T PRK14952 212 SPRDTLSVLDQ 222 (584)
T ss_pred CHHHHHHHHHH
Confidence 34444444443
No 136
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=3.1e-11 Score=147.51 Aligned_cols=185 Identities=22% Similarity=0.268 Sum_probs=132.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 35899999999999999987762 2334568999999999999999999998652
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 983 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 983 -----------fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
++.++.+. ......++.+...+... ...|+||||+|.|. ....+.|+
T Consensus 79 C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLL 140 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAML 140 (527)
T ss_pred HHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHH
Confidence 22222211 11234567776666432 23599999999882 12345566
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg 1126 (1222)
..++. ....+.+|++|+.+..+.+.+++|+ ..+.|..++.++-.+.+...+.++++. ++..+..|+..+.| +.
T Consensus 141 K~LEe----pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-sl 214 (527)
T PRK14969 141 KTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SM 214 (527)
T ss_pred HHHhC----CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 66554 2356777777878888888899998 789999999999999999888876654 44456778888776 45
Q ss_pred HHHHHHHHHHH
Q 000925 1127 SDLKNLCVTAA 1137 (1222)
Q Consensus 1127 ~DL~~L~~~Aa 1137 (1222)
+++.+++..|.
T Consensus 215 r~al~lldqai 225 (527)
T PRK14969 215 RDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHHH
Confidence 56666665544
No 137
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.30 E-value=1.3e-10 Score=128.29 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=112.9
Q ss_pred CCCccccc-C-cHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000925 916 GVTFDDIG-A-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 990 (1222)
Q Consensus 916 ~vtfddI~-G-le~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~ 990 (1222)
..+|++++ | ...+...+...... .....++|+||+|||||+|++++++++ +..+..++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 45788844 3 44455555554321 112479999999999999999999876 34455555433
Q ss_pred cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCc-EEEEEecCC
Q 000925 991 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 1069 (1222)
Q Consensus 991 L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~-VlVIaTTN~ 1069 (1222)
... ....++..... ..+|+||||+.+.+. ...++.+..+++.++. .++ .+++.+++.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~---~~~~~~lf~l~n~~~e---------~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD---ELWEMAIFDLYNRILE---------SGRTRLLITGDRP 141 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC---HHHHHHHHHHHHHHHH---------cCCCeEEEeCCCC
Confidence 211 11122222222 268999999988321 1223344444444431 133 345555556
Q ss_pred CCC---CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 000925 1070 PFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1135 (1222)
Q Consensus 1070 p~~---Ld~aLlrRF~--~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~ 1135 (1222)
|.. +.+.+++|+. .++.+..|+.++|.++++.......+. ++..++.|+...+| +.+.+..+++.
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 212 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQ 212 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 555 5799999985 578899999999999999866665443 56667888888775 44455555444
No 138
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=4.5e-11 Score=145.65 Aligned_cols=185 Identities=23% Similarity=0.274 Sum_probs=128.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC--------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 981 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 981 (1222)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+.+|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 36899999999999999887752 223456899999999999999999998864
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 982 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 982 ----------~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
.++.++...- . +-..++.+...+.. ....|+||||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a~naLL 140 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQSFNALL 140 (546)
T ss_pred HHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHHHHHHH
Confidence 2333332110 1 12234555554432 234699999999882 12334555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg 1126 (1222)
..+.. ....+.+|++|+.+..+.+++++|+ ..+.|..++.++-...++..+.++++. ++..+..|+..+.| +.
T Consensus 141 K~LEe----pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dl 214 (546)
T PRK14957 141 KTLEE----PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SL 214 (546)
T ss_pred HHHhc----CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55544 2255777777777888888899999 789999999999999999888876654 45557778888765 45
Q ss_pred HHHHHHHHHHH
Q 000925 1127 SDLKNLCVTAA 1137 (1222)
Q Consensus 1127 ~DL~~L~~~Aa 1137 (1222)
+++.++++.++
T Consensus 215 R~alnlLek~i 225 (546)
T PRK14957 215 RDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 139
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=5.8e-11 Score=145.00 Aligned_cols=183 Identities=20% Similarity=0.297 Sum_probs=129.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC--------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 981 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 981 (1222)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999887752 233467999999999999999999999853
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 982 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 982 ----------~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
.++.++... ..+-..++.+...+... ...|++|||+|.|- . ...+.|+
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----~-------~A~NaLL 140 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----T-------SAWNALL 140 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----H-------HHHHHHH
Confidence 122332211 01223466666555432 23599999999882 1 1234455
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l-~sdidl~~LA~~t~GySg 1126 (1222)
..++. ++..+++|++|+.+..+.+++++|+ .++.+..++..+...+++..+.+.+. .++..+..++..+.|. .
T Consensus 141 KtLEE----Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd-l 214 (605)
T PRK05896 141 KTLEE----PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS-L 214 (605)
T ss_pred HHHHh----CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc-H
Confidence 55543 2356777778888899999999998 58999999999999999998887654 3455577888888774 4
Q ss_pred HHHHHHHHH
Q 000925 1127 SDLKNLCVT 1135 (1222)
Q Consensus 1127 ~DL~~L~~~ 1135 (1222)
+++.++++.
T Consensus 215 R~AlnlLek 223 (605)
T PRK05896 215 RDGLSILDQ 223 (605)
T ss_pred HHHHHHHHH
Confidence 444455444
No 140
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.29 E-value=3.4e-11 Score=134.10 Aligned_cols=183 Identities=24% Similarity=0.337 Sum_probs=126.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc------EEEEecc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 989 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------fi~v~~s 989 (1222)
..+|+++.|++.+.+.|...+.. + -..++|||||||||||+.|+++|.++..+ +...+.+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~-----------~---~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR-----------R---ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh-----------c---CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 46899999999999999997752 1 12479999999999999999999999652 3334444
Q ss_pred ccccccccchHHHHHHHHHHHH-h--------cCC-cEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCC
Q 000925 990 SITSKWFGEGEKYVKAVFSLAS-K--------IAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1059 (1222)
Q Consensus 990 ~L~s~~~G~se~~I~~lF~~A~-k--------~~P-sILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~ 1059 (1222)
+..+..++ ...++ -|.... . .+| .||+|||.|.|. ...+.++++++..+ ..
T Consensus 98 derGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----sdaq~aLrr~mE~~-----------s~ 158 (346)
T KOG0989|consen 98 DERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----SDAQAALRRTMEDF-----------SR 158 (346)
T ss_pred ccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh-----HHHHHHHHHHHhcc-----------cc
Confidence 44333221 11111 122111 1 122 699999999983 23344455544332 26
Q ss_pred cEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHH
Q 000925 1060 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1132 (1222)
Q Consensus 1060 ~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L 1132 (1222)
.+++|..||..+.+...+.+|+. .+.|+....+.....|+.+..++++. ++..++.|+...+|--.+.+..|
T Consensus 159 ~trFiLIcnylsrii~pi~SRC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVSRCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred ceEEEEEcCChhhCChHHHhhHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 68899999999999999999984 56777777777788888888887776 45557888888887655544444
No 141
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=4.7e-11 Score=144.89 Aligned_cols=184 Identities=22% Similarity=0.280 Sum_probs=129.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++|+|++.+++.|..++.. .+.++.+||+||||||||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 46899999999999999988763 2233557999999999999999999988531
Q ss_pred ----------EEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhh
Q 000925 983 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1048 (1222)
Q Consensus 983 ----------fi~v~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~ 1048 (1222)
++.++... ...-..++.+...+.. ..+.||||||+|.+. ...++.|+.
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk 138 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLK 138 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHH
Confidence 33344321 1123345555444432 245699999999772 123444555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHH
Q 000925 1049 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1127 (1222)
Q Consensus 1049 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~ 1127 (1222)
.+.. ....+++|.+|+.+..+.+.+.+|+ ..+.|..|+.++...+++.++.+.++. ++..+..|+..+.|. .+
T Consensus 139 ~LEe----p~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gd-lR 212 (504)
T PRK14963 139 TLEE----PPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGA-MR 212 (504)
T ss_pred HHHh----CCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 5443 2246777778888899999999998 478999999999999999999887654 455577888888764 34
Q ss_pred HHHHHHHHH
Q 000925 1128 DLKNLCVTA 1136 (1222)
Q Consensus 1128 DL~~L~~~A 1136 (1222)
++.++++.+
T Consensus 213 ~aln~Lekl 221 (504)
T PRK14963 213 DAESLLERL 221 (504)
T ss_pred HHHHHHHHH
Confidence 444444443
No 142
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.28 E-value=7e-11 Score=129.68 Aligned_cols=190 Identities=24% Similarity=0.342 Sum_probs=135.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 992 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~ 992 (1222)
.+.++++.|++.+++.|.+.... |.+ ..|.+++||+|+.|||||++++++.+++ |..+|.+...+|.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~---G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQ---GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHc---CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 46889999999999999887653 333 3477899999999999999999999877 7788888765543
Q ss_pred cccccchHHHHHHHHHHHHhc-CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC
Q 000925 993 SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 993 s~~~G~se~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
.+..++...+.. ..-|||+|++- | ...+. -...|...++|.....+.+|+|.+|+|+.+
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs--F----e~~d~-----~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS--F----EEGDT-----EYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC--C----CCCcH-----HHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 345566655532 34799999874 2 11111 124556667776666678999999999743
Q ss_pred CCcH-----------------------HHHhcccccccCCCCCHHHHHHHHHHHHhhcccCCc-ccHH----HHHHHcCC
Q 000925 1072 DLDE-----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD-VDLE----GIANMADG 1123 (1222)
Q Consensus 1072 ~Ld~-----------------------aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~sd-idl~----~LA~~t~G 1123 (1222)
.+.+ ++..||...+.|..|+.++-.+|++.++.+.++.-+ ..+. ..|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 2221 344499999999999999999999999988766533 2332 23344457
Q ss_pred CcHHHHHHHHHH
Q 000925 1124 YSGSDLKNLCVT 1135 (1222)
Q Consensus 1124 ySg~DL~~L~~~ 1135 (1222)
.||+--++.+..
T Consensus 233 RSGRtA~QF~~~ 244 (249)
T PF05673_consen 233 RSGRTARQFIDD 244 (249)
T ss_pred CCHHHHHHHHHH
Confidence 788755555443
No 143
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.28 E-value=4.5e-11 Score=151.68 Aligned_cols=171 Identities=19% Similarity=0.308 Sum_probs=116.0
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc-------
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------- 993 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s------- 993 (1222)
++.|++++|+.+.+++...... . ......++|+||||+|||++++.||..++.+|+.+++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~--~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------N--KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------c--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4899999999999887642211 0 112245999999999999999999999999999998755321
Q ss_pred --ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHh-----HhhhccCCcccCCCcEEEEEe
Q 000925 994 --KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 1066 (1222)
Q Consensus 994 --~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~-----Ll~~ldgl~~k~~~~VlVIaT 1066 (1222)
.|.|.....+.+.+..+.... .||||||||.+..... ......+..++.. |....-.+. -+-.++++|+|
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~-g~~~~aLlevld~~~~~~~~d~~~~~~-~dls~v~~i~T 471 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMR-GDPASALLEVLDPEQNVAFSDHYLEVD-YDLSDVMFVAT 471 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccC-CCHHHHHHHHhccccEEEEeccccccc-ccCCceEEEEc
Confidence 244554445555555554333 4899999999853321 1112233233221 000000110 12367999999
Q ss_pred cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHh
Q 000925 1067 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1104 (1222)
Q Consensus 1067 TN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~ 1104 (1222)
+|.. .++++|++|| .+|.+..++.++..+|.+.++-
T Consensus 472 aN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 472 SNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhh
Confidence 9887 5999999999 5889999999999999998884
No 144
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.28 E-value=5.4e-11 Score=142.62 Aligned_cols=167 Identities=18% Similarity=0.286 Sum_probs=110.1
Q ss_pred ccceEECCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchH-HHHHHHHHHHHhcCCcEEEEccchhhhcC
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGE-KYVKAVFSLASKIAPSVVFVDEVDSMLGR 1029 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~se-~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1029 (1222)
+.++||||+|+|||+|++++++++ +..++.+++.++...+..... ..+. -|....+..+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 467888888776554322111 1111 233333446889999999988533
Q ss_pred CCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCC---CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHh
Q 000925 1030 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILA 1104 (1222)
Q Consensus 1030 r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~I~lPd~eeR~eILk~lL~ 1104 (1222)
.. .++.+..+++.+.. ....+||++...|.. +.+.+++||. ..+.+..|+.+.|.+|++..+.
T Consensus 210 ~~---~q~elf~~~n~l~~---------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 210 TG---VQTELFHTFNELHD---------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred HH---HHHHHHHHHHHHHH---------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 21 22333334444331 133455555566654 4577888884 3677899999999999999987
Q ss_pred hcccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 000925 1105 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1136 (1222)
Q Consensus 1105 k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~A 1136 (1222)
...+. ++..++.||....| +.++|..++...
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred hcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 65443 55567888887765 555666655544
No 145
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.27 E-value=1e-10 Score=140.55 Aligned_cols=169 Identities=17% Similarity=0.261 Sum_probs=112.3
Q ss_pred ccceEECCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHH---HHHHHHHHHHhcCCcEEEEccchhhh
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK---YVKAVFSLASKIAPSVVFVDEVDSML 1027 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~se~---~I~~lF~~A~k~~PsILfIDEID~L~ 1027 (1222)
++++|||++|+|||+|++++++++ +..++.+++.++...+...... .+.. |.... ....+|+||||+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEecccccc
Confidence 469999999999999999999865 4678888887766554322111 1111 11111 246799999999873
Q ss_pred cCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC---CCcHHHHhccc--ccccCCCCCHHHHHHHHHHH
Q 000925 1028 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVI 1102 (1222)
Q Consensus 1028 ~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~I~lPd~eeR~eILk~l 1102 (1222)
++. ..++.+..+++.+... .+.+||.+...|. .+++.+++||. ..+.+..|+.++|.+|++..
T Consensus 220 ~k~---~~~e~lf~l~N~~~~~---------~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YKE---KTNEIFFTIFNNFIEN---------DKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CCH---HHHHHHHHHHHHHHHc---------CCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 221 2344555555554321 2334444444443 45788999985 46778889999999999999
Q ss_pred Hhhccc---CCcccHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 000925 1103 LAKEEL---ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1139 (1222)
Q Consensus 1103 L~k~~l---~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~ 1139 (1222)
+...++ .++..+..|+....| +.+.|..+|..+...
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~ 326 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFW 326 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 987543 355567788888776 567777777766543
No 146
>PRK06893 DNA replication initiation factor; Validated
Probab=99.27 E-value=2.9e-10 Score=125.13 Aligned_cols=156 Identities=18% Similarity=0.193 Sum_probs=98.6
Q ss_pred cceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC
Q 000925 957 GILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 1033 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~ 1033 (1222)
.++||||||||||+|++++|+++ +.....++..... .....++.... +..+|+||||+.+.+..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~--- 107 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNE--- 107 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCCh---
Confidence 58999999999999999999986 3444555443211 11112233222 35799999999884322
Q ss_pred chHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCc---HHHHhccc--ccccCCCCCHHHHHHHHHHHHhhccc
Q 000925 1034 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---EAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEEL 1108 (1222)
Q Consensus 1034 ~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld---~aLlrRF~--~~I~I~lPd~eeR~eILk~lL~k~~l 1108 (1222)
..+..+..+++.+.. .+..++|++++..|..++ +.+++|+. ..+.++.|+.++|.+|++..+....+
T Consensus 108 ~~~~~l~~l~n~~~~--------~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l 179 (229)
T PRK06893 108 EWELAIFDLFNRIKE--------QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI 179 (229)
T ss_pred HHHHHHHHHHHHHHH--------cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 112233333333221 113345566666666554 78888763 57889999999999999988876555
Q ss_pred C-CcccHHHHHHHcCCCcHHHHHHHHH
Q 000925 1109 A-SDVDLEGIANMADGYSGSDLKNLCV 1134 (1222)
Q Consensus 1109 ~-sdidl~~LA~~t~GySg~DL~~L~~ 1134 (1222)
. ++..+..|+....|- .+.+..+++
T Consensus 180 ~l~~~v~~~L~~~~~~d-~r~l~~~l~ 205 (229)
T PRK06893 180 ELSDEVANFLLKRLDRD-MHTLFDALD 205 (229)
T ss_pred CCCHHHHHHHHHhccCC-HHHHHHHHH
Confidence 3 566678888887753 344444443
No 147
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=7.4e-11 Score=145.64 Aligned_cols=174 Identities=21% Similarity=0.283 Sum_probs=126.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 46899999999999999998762 2334668999999999999999999998542
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 983 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 983 -----------fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
++.++... ..+-..++.+...+... ...|+||||+|.|. ....+.|+
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLL 140 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALL 140 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHH
Confidence 33333221 11234566666655432 23599999999882 12334555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCc
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1125 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GyS 1125 (1222)
..++. ....+++|++|+.++.|.+++++|+ ..+.|..++..+-...+..++.++++. ++..+..|+..+.|-.
T Consensus 141 k~LEe----pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~l 214 (576)
T PRK14965 141 KTLEE----PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSM 214 (576)
T ss_pred HHHHc----CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH
Confidence 55544 2356888888888899999999998 588999999999888898888877654 4556777888887643
No 148
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=9.1e-11 Score=144.06 Aligned_cols=184 Identities=20% Similarity=0.220 Sum_probs=129.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 46899999999999999998762 2234569999999999999999999998642
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 983 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 983 -----------fi~v~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
++.++... ...-..++++...+.. ....|++|||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLL 140 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALL 140 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHH
Confidence 22222110 0122345555544332 234699999999882 12345566
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg 1126 (1222)
..++. .+..+++|++|+.+..+.+++++|+ ..+.|..++.++...+++..+...++. ++..+..|+....| +.
T Consensus 141 K~LEe----pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dl 214 (563)
T PRK06647 141 KTIEE----PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SV 214 (563)
T ss_pred Hhhcc----CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 66554 3356788888888888999999998 478899999999999999888776643 45567778888776 45
Q ss_pred HHHHHHHHHH
Q 000925 1127 SDLKNLCVTA 1136 (1222)
Q Consensus 1127 ~DL~~L~~~A 1136 (1222)
+++.+++..+
T Consensus 215 R~alslLdkl 224 (563)
T PRK06647 215 RDAYTLFDQV 224 (563)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 149
>PRK08727 hypothetical protein; Validated
Probab=99.26 E-value=4e-10 Score=124.35 Aligned_cols=146 Identities=22% Similarity=0.308 Sum_probs=95.7
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1032 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1032 (1222)
..++|+||+|||||+|++++++++ +..++.++..++.. .+..++.... ...+|+||||+.+.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 459999999999999999998775 56666676544321 2333343332 34799999999874322
Q ss_pred CchHHHHHHHHHhHhhhccCCcccCCCcEEEEEec-CCCCCC---cHHHHhcc--cccccCCCCCHHHHHHHHHHHHhhc
Q 000925 1033 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-NRPFDL---DEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKE 1106 (1222)
Q Consensus 1033 ~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTT-N~p~~L---d~aLlrRF--~~~I~I~lPd~eeR~eILk~lL~k~ 1106 (1222)
..+..+..+++.+. . .+..||+|+ ..|..+ ++.+++|| ...+.++.|+.++|.+|++......
T Consensus 110 -~~~~~lf~l~n~~~---------~-~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 110 -EDEVALFDFHNRAR---------A-AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred -HHHHHHHHHHHHHH---------H-cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 12233333333332 1 123344444 455544 68999997 4578899999999999999877654
Q ss_pred ccC-CcccHHHHHHHcCCC
Q 000925 1107 ELA-SDVDLEGIANMADGY 1124 (1222)
Q Consensus 1107 ~l~-sdidl~~LA~~t~Gy 1124 (1222)
.+. ++..+..|+..+.|-
T Consensus 179 ~l~l~~e~~~~La~~~~rd 197 (233)
T PRK08727 179 GLALDEAAIDWLLTHGERE 197 (233)
T ss_pred CCCCCHHHHHHHHHhCCCC
Confidence 443 555678888887653
No 150
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.26 E-value=3.4e-11 Score=144.67 Aligned_cols=193 Identities=23% Similarity=0.268 Sum_probs=142.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcE-------EEEe-
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INIS- 987 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f-------i~v~- 987 (1222)
..+|+|++|++.+...|...+.. .+-.++.||.||.|+|||++||.+|+.+++.- ..|.
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 46899999999999999998873 23346899999999999999999999986542 1111
Q ss_pred ccccccc-c---------ccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCC
Q 000925 988 MSSITSK-W---------FGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1053 (1222)
Q Consensus 988 ~s~L~s~-~---------~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl 1053 (1222)
|-.+... + ...+-+.++.+.+.+.. ....|.+|||+|.| ....++.|+..+..
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML------------S~~afNALLKTLEE- 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML------------SKQAFNALLKTLEE- 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh------------hHHHHHHHhccccc-
Confidence 1111111 0 11233456666666643 23469999999988 24567778877765
Q ss_pred cccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHH
Q 000925 1054 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1132 (1222)
Q Consensus 1054 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L 1132 (1222)
++.+|.+|.+|..++.++.++++|+ .++.|..-+.++....|..++.++.+. ++..+..+|+..+| +.+|...|
T Consensus 146 ---PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 146 ---PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred ---CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 4578999999999999999999999 578899999999999999999998876 44457778888877 45566666
Q ss_pred HHHHHhh
Q 000925 1133 CVTAAHC 1139 (1222)
Q Consensus 1133 ~~~Aa~~ 1139 (1222)
+..|...
T Consensus 221 LDq~i~~ 227 (515)
T COG2812 221 LDQAIAF 227 (515)
T ss_pred HHHHHHc
Confidence 6655543
No 151
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.25 E-value=8.7e-11 Score=136.16 Aligned_cols=167 Identities=17% Similarity=0.230 Sum_probs=106.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhC-------CcEE----
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFI---- 984 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg-------~~fi---- 984 (1222)
...|.+|+|++++|..|...+.. ....++||.|++|||||++|++++..+. .+|.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 34789999999999999776542 1235799999999999999999987762 2332
Q ss_pred -----------------------------EEeccccccccccchHHHHHHHHHHHH---------hcCCcEEEEccchhh
Q 000925 985 -----------------------------NISMSSITSKWFGEGEKYVKAVFSLAS---------KIAPSVVFVDEVDSM 1026 (1222)
Q Consensus 985 -----------------------------~v~~s~L~s~~~G~se~~I~~lF~~A~---------k~~PsILfIDEID~L 1026 (1222)
.+....-.+..+|.. .+...|.... +...++||||||+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~i--D~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTI--DIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcc--cHHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 000000001111110 0111222111 122489999999998
Q ss_pred hcCCCCCchHHHHHHHHHhHhhhc--cCCcccCCCcEEEEEecCCCC-CCcHHHHhcccccccCCCCC-HHHHHHHHHHH
Q 000925 1027 LGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPD-APNREKIIRVI 1102 (1222)
Q Consensus 1027 ~~~r~~~~~~e~l~~il~~Ll~~l--dgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~I~lPd-~eeR~eILk~l 1102 (1222)
++..+..+...+.+-...+ +|.....+.++++|+|.|..+ .+.++++.||...+.+..|+ .+.|.+|++..
T Consensus 157 -----~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 157 -----DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred -----CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhh
Confidence 3333444433333322222 344333457899999888765 69999999999999999998 59999999875
Q ss_pred H
Q 000925 1103 L 1103 (1222)
Q Consensus 1103 L 1103 (1222)
.
T Consensus 232 ~ 232 (350)
T CHL00081 232 T 232 (350)
T ss_pred h
Confidence 4
No 152
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=1.4e-10 Score=144.23 Aligned_cols=189 Identities=21% Similarity=0.293 Sum_probs=130.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEE---ec----
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---SM---- 988 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v---~~---- 988 (1222)
..+|++|+|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 46899999999999999998762 23346789999999999999999999986532100 00
Q ss_pred ------cccc-cc-cccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCccc
Q 000925 989 ------SSIT-SK-WFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1056 (1222)
Q Consensus 989 ------s~L~-s~-~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k 1056 (1222)
.++. .. ....+...++.+...+... ...|++|||+|.|. ....+.|+..++.
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEE---- 144 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEE---- 144 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhc----
Confidence 0100 00 0001234577777666543 34699999999882 1234556666654
Q ss_pred CCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 000925 1057 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1135 (1222)
Q Consensus 1057 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~ 1135 (1222)
++..+++|++|+.++.|.+++++|+ .++.|..++.++...+++..+.+.++. .+..+..+|..+.|-. +++..++..
T Consensus 145 PP~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gsl-R~AlslLek 222 (725)
T PRK07133 145 PPKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSL-RDALSIAEQ 222 (725)
T ss_pred CCCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHH
Confidence 2356788888888899999999999 589999999999999999888876654 3444777888887643 444444443
No 153
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.24 E-value=2.3e-10 Score=141.41 Aligned_cols=181 Identities=19% Similarity=0.239 Sum_probs=120.1
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh----------CCcEEEEecc
Q 000925 920 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 989 (1222)
Q Consensus 920 ddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v~~s 989 (1222)
+.|.+.++..+.|..++...+.. ..|...++|+|+||||||++++.+..++ .+.++.++|.
T Consensus 755 D~LPhREeEIeeLasfL~paIkg---------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ---------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc---------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 46889999999999888643321 1232235699999999999999998766 2668899995
Q ss_pred ccccc----------cc------c-chHHHHHHHHHHHHh--cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhc
Q 000925 990 SITSK----------WF------G-EGEKYVKAVFSLASK--IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1050 (1222)
Q Consensus 990 ~L~s~----------~~------G-~se~~I~~lF~~A~k--~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~l 1050 (1222)
.+... .+ | .....+..+|..... ....||+|||||.|... .+..+.. |+...
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----~QDVLYn----LFR~~ 896 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQKVLFT----LFDWP 896 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----HHHHHHH----HHHHh
Confidence 43221 10 1 123455666765522 23469999999999532 2233322 22221
Q ss_pred cCCcccCCCcEEEEEecCC---CCCCcHHHHhcccc-cccCCCCCHHHHHHHHHHHHhhc-ccCCcccHHHHHHHcC
Q 000925 1051 DGLRTKDKERVLVLAATNR---PFDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMAD 1122 (1222)
Q Consensus 1051 dgl~~k~~~~VlVIaTTN~---p~~Ld~aLlrRF~~-~I~I~lPd~eeR~eILk~lL~k~-~l~sdidl~~LA~~t~ 1122 (1222)
. ....++.|||++|. ++.|++.+++||.. ++.|++++.+++.+||+..+... ...++..+..+|....
T Consensus 897 -~---~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 897 -T---KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred -h---ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 1 12367999999986 45677888888864 48889999999999999988753 2334555667776444
No 154
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2e-10 Score=134.48 Aligned_cols=185 Identities=18% Similarity=0.214 Sum_probs=126.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcE----------EE
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF----------IN 985 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f----------i~ 985 (1222)
..+|++++|++.+.+.+...+.. ...++++|||||||+|||++|+++|+.+..+. ..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 46899999999999999887752 22346899999999999999999999885421 11
Q ss_pred EeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcE
Q 000925 986 ISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1061 (1222)
Q Consensus 986 v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~V 1061 (1222)
+... .........++.++..+... ...||+|||+|.+.. ...+.++..++.. ....
T Consensus 80 ~~l~----~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~~----~~~~ 139 (367)
T PRK14970 80 FELD----AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEEP----PAHA 139 (367)
T ss_pred EEec----cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhCC----CCce
Confidence 1110 00111234566777766432 246999999998721 1234444444432 2345
Q ss_pred EEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 000925 1062 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1135 (1222)
Q Consensus 1062 lVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~ 1135 (1222)
++|++++.+..+.+++.+|+ ..+.+..|+.++...++...+.+.++. ++..+..|+..+.| +.+.+.+.++.
T Consensus 140 ~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lek 212 (367)
T PRK14970 140 IFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDR 212 (367)
T ss_pred EEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 66667777788999999998 478899999999999999888877653 55667778877765 44444444443
No 155
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=2.2e-10 Score=137.77 Aligned_cols=183 Identities=22% Similarity=0.263 Sum_probs=126.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 36899999999999999887752 2334679999999999999999999988542
Q ss_pred ------------EEEEeccccccccccchHHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhH
Q 000925 983 ------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1046 (1222)
Q Consensus 983 ------------fi~v~~s~L~s~~~G~se~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~L 1046 (1222)
++.++.... . +-..++.+.... ......||||||+|.|. ....+.|
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~L 141 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSL 141 (451)
T ss_pred HHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHH
Confidence 333332110 0 112333333222 22345799999999882 1123455
Q ss_pred hhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCc
Q 000925 1047 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1125 (1222)
Q Consensus 1047 l~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GyS 1125 (1222)
+..++. ....+++|++|+.+..+.+++++|+ ..+.+..++.++...+++..+++.+.. ++..+..|+..+.| +
T Consensus 142 Lk~lEe----p~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-d 215 (451)
T PRK06305 142 LKTLEE----PPQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-S 215 (451)
T ss_pred HHHhhc----CCCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 555544 2246777778888889999999999 578999999999999999888776543 45567788888876 3
Q ss_pred HHHHHHHHHH
Q 000925 1126 GSDLKNLCVT 1135 (1222)
Q Consensus 1126 g~DL~~L~~~ 1135 (1222)
.+++.++++.
T Consensus 216 lr~a~~~Lek 225 (451)
T PRK06305 216 LRDAESLYDY 225 (451)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 156
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.22 E-value=9.6e-11 Score=135.41 Aligned_cols=165 Identities=20% Similarity=0.274 Sum_probs=104.0
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh-------CCc--EEEEe
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINIS 987 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el-------g~~--fi~v~ 987 (1222)
..|.+|+|++++++.|.-.+.. . ...++||+|+||+|||++|++++..+ +++ +..+.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~----------~----~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID----------P----GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc----------c----CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 4689999999999888754321 1 12579999999999999999999988 332 11111
Q ss_pred c-ccc--------c---------------cccccch--HHH--------HHHHHHHHHhcCCcEEEEccchhhhcCCCCC
Q 000925 988 M-SSI--------T---------------SKWFGEG--EKY--------VKAVFSLASKIAPSVVFVDEVDSMLGRRENP 1033 (1222)
Q Consensus 988 ~-s~L--------~---------------s~~~G~s--e~~--------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~ 1033 (1222)
+ .++ . ...+|.. +.. -.+.+..| ..++||||||+.+ ++
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A---~~GiL~lDEInrl-----~~ 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARA---NRGYLYIDEVNLL-----ED 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEc---CCCeEEecChHhC-----CH
Confidence 0 000 0 0012210 000 01111112 2379999999987 33
Q ss_pred chHHHHHHHHHhHh--hhccCCcccCCCcEEEEEecCCCC-CCcHHHHhcccccccCCCCCH-HHHHHHHHHHH
Q 000925 1034 GEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 1103 (1222)
Q Consensus 1034 ~~~e~l~~il~~Ll--~~ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~I~lPd~-eeR~eILk~lL 1103 (1222)
..+..+...+++-. ...+|.......++++|+|+|..+ .+.++++.||...+.++.|.. ++|.+|++...
T Consensus 143 ~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 143 HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 33344444443322 123444434457899999999755 689999999998888888876 89999998754
No 157
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.22 E-value=3.8e-11 Score=140.33 Aligned_cols=273 Identities=20% Similarity=0.231 Sum_probs=160.9
Q ss_pred cCCCHHHHHHHHhhhhhhhhccccCCCCCCCccccccCchhhhHH-HHHhhhhhhhhhhhhhccccChhHHHHHHhcCCC
Q 000925 832 QTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLN-ILQGIQSESKSLKKSLKDVVTENEFEKKLLADVI 910 (1222)
Q Consensus 832 kg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~-df~~a~~eik~~~~slk~lv~~~e~~~~ll~~vI 910 (1222)
..+++.++...+ ..+.++....+.........++...++.+-.. .|.. .+... ..+ . ....
T Consensus 7 ~~~ta~~~a~~l-~~r~~vs~~l~~l~~~~~~~~~~~~pv~~~~~~a~~~--~~~~~----------~~~----~-~~~~ 68 (403)
T COG1221 7 TAFTAEAIAEQL-MLRANVSHELNGLGREGDLAKINGRPVIFLPSEAFSM--SELTE----------LQA----L-LPQA 68 (403)
T ss_pred hhhhHHHHHHHH-HHHHHhHHHHHhhhhhhhHHHhcCCCchhHHHHHhhh--hhhhh----------hhh----c-ccch
Confidence 345666666655 55555555555544445556677777766432 2220 00000 000 0 0000
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHH----hCCcEEEE
Q 000925 911 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE----AGANFINI 986 (1222)
Q Consensus 911 p~~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~e----lg~~fi~v 986 (1222)
.+......+.+++|.....+.+++.+.. +. .-...|||+|++||||+.+|+.|... .+.|||.+
T Consensus 69 ~~~~~~~~~~~LIG~~~~~~~~~eqik~-------~a-----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~ 136 (403)
T COG1221 69 RPYLKSEALDDLIGESPSLQELREQIKA-------YA-----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAF 136 (403)
T ss_pred hhhccchhhhhhhccCHHHHHHHHHHHh-------hC-----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEE
Confidence 0111234577899988888888877652 11 11245999999999999999999643 36799999
Q ss_pred eccccccc-----cccch-------HHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCc
Q 000925 987 SMSSITSK-----WFGEG-------EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1054 (1222)
Q Consensus 987 ~~s~L~s~-----~~G~s-------e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~ 1054 (1222)
||+.+... .||.. ...-..+|+.|.. ++||+|||+.| ++..++.+.++++.....--|-.
T Consensus 137 NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~L-----P~~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 137 NCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRL-----PPEGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred EHHHhCcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhC-----CHhHHHHHHHHHHcCceEecCCC
Confidence 99875432 33321 2223346666655 89999999998 66778888888877665544444
Q ss_pred ccCCCcEEEEEecCCC--CCCcH--HHHhcccccccCCCCCHHHHHH----HHHHHHhh----cccCCcc-c---HHHHH
Q 000925 1055 TKDKERVLVLAATNRP--FDLDE--AVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EELASDV-D---LEGIA 1118 (1222)
Q Consensus 1055 ~k~~~~VlVIaTTN~p--~~Ld~--aLlrRF~~~I~I~lPd~eeR~e----ILk~lL~k----~~l~sdi-d---l~~LA 1118 (1222)
......|.+|++|+.. +.+-. .+.+|. ..+.|.+|...+|.. +++++++. ....... . +..|-
T Consensus 209 ~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~ 287 (403)
T COG1221 209 QPRPVDVRLICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALL 287 (403)
T ss_pred CCcCCCceeeeccccCHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 4445789999999642 33333 444433 247778888777743 55555554 2222111 1 22222
Q ss_pred HHcCCCcHHHHHHHHHHHHhhhhHH
Q 000925 1119 NMADGYSGSDLKNLCVTAAHCPIRE 1143 (1222)
Q Consensus 1119 ~~t~GySg~DL~~L~~~Aa~~airr 1143 (1222)
...---+.++|+++++.++..+.-.
T Consensus 288 ~y~~pGNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 288 AYDWPGNIRELKNLVERAVAQASGE 312 (403)
T ss_pred hCCCCCcHHHHHHHHHHHHHHhccc
Confidence 2222236789999999998877533
No 158
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=2.2e-10 Score=141.35 Aligned_cols=190 Identities=22% Similarity=0.174 Sum_probs=131.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEe-------c
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-------M 988 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~-------~ 988 (1222)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.....+ |
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 36899999999999999997752 234568999999999999999999999865432111 0
Q ss_pred --------------ccccccc--ccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhh
Q 000925 989 --------------SSITSKW--FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1048 (1222)
Q Consensus 989 --------------s~L~s~~--~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~ 1048 (1222)
.++.... ...+-..++.+...+... ...|+||||+|.|- ....+.|+.
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLK 154 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLK 154 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHH
Confidence 0111000 011234567777666433 24699999999882 123445555
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHH
Q 000925 1049 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1127 (1222)
Q Consensus 1049 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~ 1127 (1222)
.+... ...+.+|++|+.+..+.+.+++|+ .++.|..++.++...+++..+.+++.. ++..+..|+..+.| +.+
T Consensus 155 tLEeP----p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr 228 (598)
T PRK09111 155 TLEEP----PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVR 228 (598)
T ss_pred HHHhC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55442 355777777777788888999998 579999999999999999998887654 44556777887776 455
Q ss_pred HHHHHHHHH
Q 000925 1128 DLKNLCVTA 1136 (1222)
Q Consensus 1128 DL~~L~~~A 1136 (1222)
++.+++..+
T Consensus 229 ~al~~Ldkl 237 (598)
T PRK09111 229 DGLSLLDQA 237 (598)
T ss_pred HHHHHHHHH
Confidence 555555444
No 159
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=2.6e-10 Score=138.02 Aligned_cols=184 Identities=21% Similarity=0.307 Sum_probs=126.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++++|++.+.+.|...+.. .+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 45899999999999999988752 2233568999999999999999999998641
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 983 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 983 -----------fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
++.++.+. ..+-..++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 79 c~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLL 140 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALL 140 (486)
T ss_pred HHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHH
Confidence 11121110 11223455555554432 34699999999882 12334455
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg 1126 (1222)
..+... +..+++|.+|+.++.+.+++.+|+ ..+.+..++.++...+++.+++..++. ++..+..|+..+.| +.
T Consensus 141 k~LEep----p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~l 214 (486)
T PRK14953 141 KTLEEP----PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GM 214 (486)
T ss_pred HHHhcC----CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555442 244566666677788888999998 478999999999999999998887654 44557778888776 34
Q ss_pred HHHHHHHHHH
Q 000925 1127 SDLKNLCVTA 1136 (1222)
Q Consensus 1127 ~DL~~L~~~A 1136 (1222)
+++.++++.+
T Consensus 215 r~al~~Ldkl 224 (486)
T PRK14953 215 RDAASLLDQA 224 (486)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 160
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.21 E-value=1.3e-10 Score=130.32 Aligned_cols=141 Identities=23% Similarity=0.316 Sum_probs=93.9
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEeccc------cccccccchHH-HH-------------------HHHHHH
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEK-YV-------------------KAVFSL 1009 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~------L~s~~~G~se~-~I-------------------~~lF~~ 1009 (1222)
..+||+||||||||++|+++|..+|.+++.++|.. +.+.+.+.... .. ...+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46999999999999999999999999999998754 33333222111 11 111223
Q ss_pred HHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcc-----cCCCcEEEEEecCCC-----CCCcHHHHh
Q 000925 1010 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-----KDKERVLVLAATNRP-----FDLDEAVVR 1079 (1222)
Q Consensus 1010 A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~-----k~~~~VlVIaTTN~p-----~~Ld~aLlr 1079 (1222)
|.+ .+.+|+||||+++ ++..+..+..++.+....+.+... ..+.++.||+|+|.. ..+++++++
T Consensus 102 A~~-~g~~lllDEi~r~-----~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRS-----KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred HHH-cCCEEEEcchhhC-----CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 333 3479999999987 333333444444332222222111 122478899999975 367899999
Q ss_pred cccccccCCCCCHHHHHHHHHHHH
Q 000925 1080 RLPRRLMVNLPDAPNREKIIRVIL 1103 (1222)
Q Consensus 1080 RF~~~I~I~lPd~eeR~eILk~lL 1103 (1222)
|| ..+.++.|+.++..+|++..+
T Consensus 176 R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 176 RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred hc-EEEECCCCCHHHHHHHHHHhh
Confidence 99 678999999999999998764
No 161
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.20 E-value=3e-10 Score=141.23 Aligned_cols=231 Identities=19% Similarity=0.241 Sum_probs=135.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh----------CCcEEE
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 985 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~ 985 (1222)
..+|++++|.+...+.+...+.. .+ +.+++|+||||||||+||+++++.. +.+|+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~-~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PF-PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CC-CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 35899999999988877665431 11 2479999999999999999998665 357899
Q ss_pred Eeccccc-------cccccchHHH----HHHHHHH----------HHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHH
Q 000925 986 ISMSSIT-------SKWFGEGEKY----VKAVFSL----------ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 1044 (1222)
Q Consensus 986 v~~s~L~-------s~~~G~se~~----I~~lF~~----------A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~ 1044 (1222)
++|..+. ..+++..... .+..+.. ......++|||||++.| +...+..+.+++.
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----d~~~Q~~Ll~~Le 290 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----DPLLQNKLLKVLE 290 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----CHHHHHHHHHHHh
Confidence 9987642 1122211110 0011100 11223579999999988 3333444444443
Q ss_pred hHhhhccC----------------C-cccCCCcEEEEEe-cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhc
Q 000925 1045 EFMVNWDG----------------L-RTKDKERVLVLAA-TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE 1106 (1222)
Q Consensus 1045 ~Ll~~ldg----------------l-~~k~~~~VlVIaT-TN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~ 1106 (1222)
.-...+.+ + ....+..+++|++ |+.+..+++++++||. .+.++.++.++...|++.++.+.
T Consensus 291 ~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~ 369 (615)
T TIGR02903 291 DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKI 369 (615)
T ss_pred hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHc
Confidence 32111000 0 0011234566654 5668889999999995 67888899999999999998875
Q ss_pred ccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHH
Q 000925 1107 ELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQ 1185 (1222)
Q Consensus 1107 ~l~-sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alek 1185 (1222)
.+. ++..++.|+..+. .++...+++..+...+..+.. .. . .......|+.+|+.+++..
T Consensus 370 ~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~--------~~-~---------~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 370 NVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAA--------EA-G---------KENDKVTITQDDVYEVIQI 429 (615)
T ss_pred CCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHH--------Hh-c---------cCCCCeeECHHHHHHHhCC
Confidence 432 3444555555542 334333444444322222110 00 0 0112257899999999875
Q ss_pred h
Q 000925 1186 V 1186 (1222)
Q Consensus 1186 v 1186 (1222)
-
T Consensus 430 ~ 430 (615)
T TIGR02903 430 S 430 (615)
T ss_pred C
Confidence 3
No 162
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=2.9e-10 Score=138.09 Aligned_cols=187 Identities=21% Similarity=0.240 Sum_probs=131.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC--------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 981 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 981 (1222)
..+|++++|++.+++.|...+.. + +.++.+||+||+|+|||++|+++|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~----------g---rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN----------N---RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc----------C---CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999988752 2 23356799999999999999999998732
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 982 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 982 ----------~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
.++.++...- .+-..++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 77 C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALL 138 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALL 138 (535)
T ss_pred HHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 1233322110 1124555555443321 12599999999882 12334455
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000925 1048 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1048 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg 1126 (1222)
..+... +..+.+|.+|+.+..+.+++++|+ ..+.|..++.++-...++..+.++++. ++..+..|+....| +.
T Consensus 139 K~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 139 KTLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SL 212 (535)
T ss_pred HHHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 555442 245677777777899999999997 688999999999999999988887654 45567788888776 66
Q ss_pred HHHHHHHHHHHhh
Q 000925 1127 SDLKNLCVTAAHC 1139 (1222)
Q Consensus 1127 ~DL~~L~~~Aa~~ 1139 (1222)
+++.+++..|...
T Consensus 213 R~alnlLdqai~~ 225 (535)
T PRK08451 213 RDTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHHHHHh
Confidence 6777777665543
No 163
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=2.5e-10 Score=141.62 Aligned_cols=182 Identities=21% Similarity=0.254 Sum_probs=128.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++++|++.+++.|...+.. . +-.+++||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~----------~---rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALIS----------N---RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHc----------C---CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 36899999999999999988763 1 223579999999999999999999998663
Q ss_pred -------------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHh
Q 000925 983 -------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1045 (1222)
Q Consensus 983 -------------fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~ 1045 (1222)
++.++.. ....-..+++++..+... ...||||||+|.|- ....+.
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~na 140 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNA 140 (620)
T ss_pred HHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHH
Confidence 1222111 122345677777766532 23699999999882 123455
Q ss_pred HhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCC
Q 000925 1046 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1124 (1222)
Q Consensus 1046 Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~Gy 1124 (1222)
|+..++. ....+++|++|+.+..+.+++++|+ ..+.|..++.++-...+..++.++++. ++..+..|+..+.|.
T Consensus 141 LLK~LEe----Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~ 215 (620)
T PRK14948 141 LLKTLEE----PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG 215 (620)
T ss_pred HHHHHhc----CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 5666554 2356777777778888999999998 578888888888888888877775433 345577888888775
Q ss_pred cHHHHHHHHH
Q 000925 1125 SGSDLKNLCV 1134 (1222)
Q Consensus 1125 Sg~DL~~L~~ 1134 (1222)
. +++.++++
T Consensus 216 l-r~A~~lLe 224 (620)
T PRK14948 216 L-RDAESLLD 224 (620)
T ss_pred H-HHHHHHHH
Confidence 4 33333333
No 164
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=3.3e-10 Score=134.24 Aligned_cols=184 Identities=17% Similarity=0.209 Sum_probs=124.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 982 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 982 (1222)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 46899999999999999887752 2334679999999999999999999999662
Q ss_pred -------------------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHH
Q 000925 983 -------------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAM 1039 (1222)
Q Consensus 983 -------------------fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l 1039 (1222)
++.++... ...-..++.+.+.+... ...|+||||+|.|. .
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------~--- 141 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------I--- 141 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------H---
Confidence 11111110 01123455554444221 23599999999882 1
Q ss_pred HHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhccc-CCcccHHHHH
Q 000925 1040 RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIA 1118 (1222)
Q Consensus 1040 ~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l-~sdidl~~LA 1118 (1222)
...+.|+..++. ....+++|.+|+.+..+.+++.+|+ ..+.+..++.++-..+++..++.... .++..++.|+
T Consensus 142 -~~~~~LLk~LEe----p~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 142 -AAFNAFLKTLEE----PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred -HHHHHHHHHHhc----CCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 122334444433 2245566666677788888999998 47889999999988888888877654 3556678888
Q ss_pred HHcCCCcHHHHHHHHHHH
Q 000925 1119 NMADGYSGSDLKNLCVTA 1136 (1222)
Q Consensus 1119 ~~t~GySg~DL~~L~~~A 1136 (1222)
..+.|. .+.+.++++.+
T Consensus 216 ~~s~g~-lr~a~~~L~kl 232 (397)
T PRK14955 216 RKAQGS-MRDAQSILDQV 232 (397)
T ss_pred HHcCCC-HHHHHHHHHHH
Confidence 888764 44444444443
No 165
>PRK06620 hypothetical protein; Validated
Probab=99.19 E-value=6.1e-10 Score=121.49 Aligned_cols=143 Identities=17% Similarity=0.253 Sum_probs=95.1
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1035 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1035 (1222)
+.++||||+|+|||+|++++++..+..++.. .. . ....+ + ...+|+|||||.+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~--~~-----~------~~~~~----~-~~d~lliDdi~~~--------~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKD--IF-----F------NEEIL----E-KYNAFIIEDIENW--------Q 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcch--hh-----h------chhHH----h-cCCEEEEeccccc--------h
Confidence 5699999999999999999999887543321 00 0 01111 1 2379999999965 1
Q ss_pred HHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCC--CcHHHHhcccc--cccCCCCCHHHHHHHHHHHHhhcccC-C
Q 000925 1036 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD--LDEAVVRRLPR--RLMVNLPDAPNREKIIRVILAKEELA-S 1110 (1222)
Q Consensus 1036 ~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~--Ld~aLlrRF~~--~I~I~lPd~eeR~eILk~lL~k~~l~-s 1110 (1222)
...+..+++.+. +.++.+||+++..|.. + +.+++|+.. ++.+..|+.+.+..+++..+....+. +
T Consensus 99 ~~~lf~l~N~~~---------e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EPALLHIFNIIN---------EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HHHHHHHHHHHH---------hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 233444444443 1245677777755543 5 889999853 68899999999999999888765443 5
Q ss_pred cccHHHHHHHcCCCcHHHHHHHHHH
Q 000925 1111 DVDLEGIANMADGYSGSDLKNLCVT 1135 (1222)
Q Consensus 1111 didl~~LA~~t~GySg~DL~~L~~~ 1135 (1222)
+..++.|+....| +.+.+.++++.
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHH
Confidence 5667888887765 34455544443
No 166
>PRK05642 DNA replication initiation factor; Validated
Probab=99.18 E-value=1.3e-09 Score=120.42 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=102.6
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1032 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1032 (1222)
+.++|+||+|+|||+|++++++++ +..++.++..++... ...+...... ..+|+|||++.+.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCCh--
Confidence 569999999999999999999875 567788887665432 1122222222 2699999999873221
Q ss_pred CchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC---CCcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhcc
Q 000925 1033 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEE 1107 (1222)
Q Consensus 1033 ~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~I~lPd~eeR~eILk~lL~k~~ 1107 (1222)
..++.+..+++.+. .+++.+||+++..|. .+.+.+++||. .++.+..|+.++|.++++.......
T Consensus 114 -~~~~~Lf~l~n~~~---------~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 -DWEEALFHLFNRLR---------DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred -HHHHHHHHHHHHHH---------hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 22334445555432 124566776665553 33688999984 5677789999999999996655544
Q ss_pred c-CCcccHHHHHHHcCCCcHHHHHHHHHH
Q 000925 1108 L-ASDVDLEGIANMADGYSGSDLKNLCVT 1135 (1222)
Q Consensus 1108 l-~sdidl~~LA~~t~GySg~DL~~L~~~ 1135 (1222)
+ .++..++.|+....+ +.+.+..+++.
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 211 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLER 211 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 3 245567777777764 44455544443
No 167
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.16 E-value=2.6e-10 Score=112.22 Aligned_cols=123 Identities=41% Similarity=0.651 Sum_probs=79.7
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHH---HHHHHHHHHhcCCcEEEEccchhhhcC
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKY---VKAVFSLASKIAPSVVFVDEVDSMLGR 1029 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~se~~---I~~lF~~A~k~~PsILfIDEID~L~~~ 1029 (1222)
.+++|+||||+|||++++.++..+ +.+++.+++.............. ....+..+....+.+|+|||++.+.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~-- 97 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS-- 97 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh--
Confidence 579999999999999999999998 88999999877544322211111 1222334445568999999999871
Q ss_pred CCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC--CCcHHHHhcccccccCC
Q 000925 1030 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVN 1088 (1222)
Q Consensus 1030 r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRF~~~I~I~ 1088 (1222)
.........++..+. ... ....++.+|++++... .+++.+.+||+.++.++
T Consensus 98 ---~~~~~~~~~~i~~~~---~~~--~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 98 ---RGAQNALLRVLETLN---DLR--IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ---HHHHHHHHHHHHhcC---cee--ccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 111122222222221 111 1235688889998776 78889999997665554
No 168
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=5.5e-10 Score=138.45 Aligned_cols=183 Identities=22% Similarity=0.279 Sum_probs=124.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcE------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 983 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f------------ 983 (1222)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+.+|+.+++..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 46899999999999999887762 12335689999999999999999999985422
Q ss_pred -------------EEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhH
Q 000925 984 -------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1046 (1222)
Q Consensus 984 -------------i~v~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~L 1046 (1222)
+.++... ...-..++.+...+.. ....||||||+|.|- ...++.|
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naL 140 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNAL 140 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHH
Confidence 2222110 1112344555443332 224699999999882 1233445
Q ss_pred hhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCc
Q 000925 1047 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1125 (1222)
Q Consensus 1047 l~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GyS 1125 (1222)
+..++.. ...++||++++..+.+.+.+++|+ .++.|..++..+...+++.++.+.++. ++..+..|+..+.| +
T Consensus 141 Lk~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-d 214 (585)
T PRK14950 141 LKTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-S 214 (585)
T ss_pred HHHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 5555442 245677777777788888999898 578899999999999999888776643 44557788887776 5
Q ss_pred HHHHHHHHHH
Q 000925 1126 GSDLKNLCVT 1135 (1222)
Q Consensus 1126 g~DL~~L~~~ 1135 (1222)
.+++.++++.
T Consensus 215 lr~al~~Lek 224 (585)
T PRK14950 215 MRDAENLLQQ 224 (585)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 169
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=7.7e-10 Score=136.89 Aligned_cols=180 Identities=18% Similarity=0.215 Sum_probs=121.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEE----------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---------- 985 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~---------- 985 (1222)
..+|++|+|++.+++.|+..+.. .+-++++||+||+|+|||++|+.+|+.+.+.-..
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 46899999999999999887752 2334679999999999999999999999763100
Q ss_pred Eecc--------------cccccccc---chHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHH
Q 000925 986 ISMS--------------SITSKWFG---EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 1044 (1222)
Q Consensus 986 v~~s--------------~L~s~~~G---~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~ 1044 (1222)
-.|. ++. .+-+ .....|+.+.+.+.. ....|++|||+|.|. . ...+
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~-~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------~----~a~n 145 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------T----AAFN 145 (620)
T ss_pred CCCccCHHHHHHhccCCCCeE-EecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------H----HHHH
Confidence 0010 000 0001 112345555444421 223699999999882 1 1234
Q ss_pred hHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCC
Q 000925 1045 EFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADG 1123 (1222)
Q Consensus 1045 ~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l-~sdidl~~LA~~t~G 1123 (1222)
.|+..++.. ...+++|++|+.+..+.+++++|+ ..+.|..++.++-...++..+..++. .++..++.|+..+.|
T Consensus 146 aLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 146 AFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 555555442 244666666677788989999998 68899999999988888888887654 356667888888877
Q ss_pred CcH
Q 000925 1124 YSG 1126 (1222)
Q Consensus 1124 ySg 1126 (1222)
..+
T Consensus 221 dlr 223 (620)
T PRK14954 221 SMR 223 (620)
T ss_pred CHH
Confidence 433
No 170
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.15 E-value=7.6e-10 Score=121.12 Aligned_cols=166 Identities=19% Similarity=0.339 Sum_probs=104.0
Q ss_pred cceEECCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHH-HHHHHHHHHHhcCCcEEEEccchhhhcCC
Q 000925 957 GILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK-YVKAVFSLASKIAPSVVFVDEVDSMLGRR 1030 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~se~-~I~~lF~~A~k~~PsILfIDEID~L~~~r 1030 (1222)
.++||||+|+|||+|.++|++++ +..++++++.++...+...... .+.. |....+ ...+|+||+|+.+.++
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~~~~~-~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEE-FKDRLR-SADLLIIDDIQFLAGK- 112 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHH-HHHHHC-TSSEEEEETGGGGTTH-
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchh-hhhhhh-cCCEEEEecchhhcCc-
Confidence 48999999999999999998875 5778889887765543221111 1111 222222 4579999999998421
Q ss_pred CCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC---CCcHHHHhcccc--cccCCCCCHHHHHHHHHHHHhh
Q 000925 1031 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLPR--RLMVNLPDAPNREKIIRVILAK 1105 (1222)
Q Consensus 1031 ~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~~--~I~I~lPd~eeR~eILk~lL~k 1105 (1222)
...++.+..+++.+... ++.+||++...|. .+++.+++||.. .+.+..|+.+.|.+|++..+..
T Consensus 113 --~~~q~~lf~l~n~~~~~---------~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 113 --QRTQEELFHLFNRLIES---------GKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp --HHHHHHHHHHHHHHHHT---------TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHhh---------CCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 12344555555555422 4455666555554 356889999855 7888999999999999999888
Q ss_pred cccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000925 1106 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1137 (1222)
Q Consensus 1106 ~~l~-sdidl~~LA~~t~GySg~DL~~L~~~Aa 1137 (1222)
..+. ++..++.|+....+ +.++|..++....
T Consensus 182 ~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 182 RGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp TT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 6655 44556677777653 6667776666544
No 171
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.15 E-value=7.3e-10 Score=126.23 Aligned_cols=184 Identities=22% Similarity=0.285 Sum_probs=121.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 990 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg-----~~fi~v~~s~ 990 (1222)
..+|+++.|.+++++.|..++.. . .. .++||+||+|+|||++++++++++. .+++.+++++
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~----------~---~~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE----------K---NM-PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC----------C---CC-CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 36899999999999999887752 1 11 3589999999999999999999872 3456665443
Q ss_pred cccccccchHHHHHHHH-HHHHh-----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEE
Q 000925 991 ITSKWFGEGEKYVKAVF-SLASK-----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1064 (1222)
Q Consensus 991 L~s~~~G~se~~I~~lF-~~A~k-----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVI 1064 (1222)
... ...+...+ ..+.. ..+.+|+|||+|.+.. ..+ +.|...++... ....+|
T Consensus 79 ~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----~~~-------~~L~~~le~~~----~~~~lI 136 (319)
T PRK00440 79 ERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----DAQ-------QALRRTMEMYS----QNTRFI 136 (319)
T ss_pred ccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----HHH-------HHHHHHHhcCC----CCCeEE
Confidence 211 11222222 22222 2346999999998821 111 22222233221 335566
Q ss_pred EecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000925 1065 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1137 (1222)
Q Consensus 1065 aTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~Aa 1137 (1222)
.++|.+..+.+.+.+|+. ++.+..++.++...+++.++.+.++. ++..+..|+..+.|... .+.+.++.++
T Consensus 137 l~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r-~~~~~l~~~~ 208 (319)
T PRK00440 137 LSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMR-KAINALQAAA 208 (319)
T ss_pred EEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 677777788888988984 68999999999999999999876653 55668888888776444 3444444443
No 172
>PHA02244 ATPase-like protein
Probab=99.13 E-value=5.9e-10 Score=129.06 Aligned_cols=129 Identities=19% Similarity=0.308 Sum_probs=84.5
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEeccc----cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCC
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS----ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 1031 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~----L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~ 1031 (1222)
..|||+||||||||+||++||..++.+|+.++.-. +.+ +..........-|..|.+ ..++||||||+.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a----- 192 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDAS----- 192 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcC-----
Confidence 46999999999999999999999999999998421 111 111111222233444433 4589999999976
Q ss_pred CCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCC-----------CCCcHHHHhcccccccCCCCCH
Q 000925 1032 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-----------FDLDEAVVRRLPRRLMVNLPDA 1092 (1222)
Q Consensus 1032 ~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p-----------~~Ld~aLlrRF~~~I~I~lPd~ 1092 (1222)
.+..+..+..++......+.+-....+.++.+|+|+|.+ ..|++++++|| ..+.++.|+.
T Consensus 193 ~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 193 IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH
Confidence 223333444444322212222222234689999999973 57899999999 5789999983
No 173
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.12 E-value=2.3e-10 Score=131.07 Aligned_cols=142 Identities=15% Similarity=0.203 Sum_probs=99.5
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccc--cccchH----------HHHHHHHHHHHhcCCcEEEEccc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEGE----------KYVKAVFSLASKIAPSVVFVDEV 1023 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~--~~G~se----------~~I~~lF~~A~k~~PsILfIDEI 1023 (1222)
++|||.||||||||++|+.+|..++.+++.+++...+.. ++|... ....+.+..|.+ .+.+|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 579999999999999999999999999999998654332 344211 122345556655 4588999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHh-HhhhccC--CcccCCCcEEEEEecCCCC------------CCcHHHHhcccccccCC
Q 000925 1024 DSMLGRRENPGEHEAMRKMKNE-FMVNWDG--LRTKDKERVLVLAATNRPF------------DLDEAVVRRLPRRLMVN 1088 (1222)
Q Consensus 1024 D~L~~~r~~~~~~e~l~~il~~-Ll~~ldg--l~~k~~~~VlVIaTTN~p~------------~Ld~aLlrRF~~~I~I~ 1088 (1222)
|.. .+..+..+..++.. -...+.+ -.......++||||+|+.+ .++++++.||..++.++
T Consensus 144 n~a-----~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 144 DAG-----RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred hcc-----CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 976 33344444445442 0111211 1112335799999999854 56899999997778899
Q ss_pred CCCHHHHHHHHHHHH
Q 000925 1089 LPDAPNREKIIRVIL 1103 (1222)
Q Consensus 1089 lPd~eeR~eILk~lL 1103 (1222)
+|+.++-.+|+....
T Consensus 219 Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 219 YLEHDNEAAIVLAKA 233 (327)
T ss_pred CCCHHHHHHHHHhhc
Confidence 999999999988664
No 174
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.11 E-value=1.1e-09 Score=127.06 Aligned_cols=164 Identities=18% Similarity=0.277 Sum_probs=101.8
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh-------CCcEE------
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------ 984 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el-------g~~fi------ 984 (1222)
.|..|+|+++++..|.-.+..| ...++||.|++|+|||+|+++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~--------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP--------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC--------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 3778999999998876544321 12579999999999999999999776 22221
Q ss_pred ---EEecc-------------------cc-----ccccccchH--HH--------HHHHHHHHHhcCCcEEEEccchhhh
Q 000925 985 ---NISMS-------------------SI-----TSKWFGEGE--KY--------VKAVFSLASKIAPSVVFVDEVDSML 1027 (1222)
Q Consensus 985 ---~v~~s-------------------~L-----~s~~~G~se--~~--------I~~lF~~A~k~~PsILfIDEID~L~ 1027 (1222)
..+|. ++ ....+|... .. -.+++..| ..++||||||+.+
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L- 143 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLL- 143 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhC-
Confidence 00000 10 011222210 00 01122222 3489999999988
Q ss_pred cCCCCCchHHHHHHHHHhHh--hhccCCcccCCCcEEEEEecCCCC-CCcHHHHhcccccccCCCCCH-HHHHHHHHHHH
Q 000925 1028 GRRENPGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 1103 (1222)
Q Consensus 1028 ~~r~~~~~~e~l~~il~~Ll--~~ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~I~lPd~-eeR~eILk~lL 1103 (1222)
++..+..+..++.+-. ...+|.......++++|+|+|..+ .+.++++.||...+.+..|.. ++|.+|++...
T Consensus 144 ----~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 144 ----EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred ----CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhh
Confidence 3233333333333211 122343333346789999998765 789999999998888988875 88999998743
No 175
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.09 E-value=8.2e-10 Score=138.02 Aligned_cols=165 Identities=22% Similarity=0.316 Sum_probs=106.6
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh------------------
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------ 979 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el------------------ 979 (1222)
.|.+|+|++.++..|.-.... ....+|||.|++|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~--------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~ 67 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD--------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP 67 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC--------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc
Confidence 377899999999887654432 111469999999999999999999887
Q ss_pred -----------------CCcEEEEeccccccccccch--HHHH--------HHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 000925 980 -----------------GANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEVDSMLGRREN 1032 (1222)
Q Consensus 980 -----------------g~~fi~v~~s~L~s~~~G~s--e~~I--------~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1032 (1222)
..+|+.+.+.......+|.. +..+ ..++..| ..+|||||||+.+ +
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l-----~ 139 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL-----D 139 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC-----C
Confidence 35677766654444444432 1111 1122222 2379999999988 3
Q ss_pred CchHHHHHHHHHhHh--hhccCCcccCCCcEEEEEecCCC-CCCcHHHHhcccccccCCCCC-HHHHHHHHHHHHh
Q 000925 1033 PGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLPD-APNREKIIRVILA 1104 (1222)
Q Consensus 1033 ~~~~e~l~~il~~Ll--~~ldgl~~k~~~~VlVIaTTN~p-~~Ld~aLlrRF~~~I~I~lPd-~eeR~eILk~lL~ 1104 (1222)
...+..+..++++-. ....|.......+++||+|+|.. ..+.++++.||+..+.+..|. .++|.++++..+.
T Consensus 140 ~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 140 DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHh
Confidence 233333333333221 12233333334679999999864 468899999999777777664 6778888876543
No 176
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.09 E-value=6.4e-11 Score=140.60 Aligned_cols=202 Identities=24% Similarity=0.301 Sum_probs=130.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccc-
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 991 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L- 991 (1222)
..+|++|+|....+..+.+.+.. . ......|||.|++||||..+|++|-+.. +.|||.+||+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr----------~--A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR----------I--AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh----------h--cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 46899999999888888776652 1 2233579999999999999999998776 789999999763
Q ss_pred ----ccccccchHHH--------HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCC
Q 000925 992 ----TSKWFGEGEKY--------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1059 (1222)
Q Consensus 992 ----~s~~~G~se~~--------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~ 1059 (1222)
.+..||..... -.++|+.|.. +-||||||..| +..-|..+-+++++-...--|-....+.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----pl~LQaKLLRVLQEkei~rvG~t~~~~v 380 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----PLPLQAKLLRVLQEKEIERVGGTKPIPV 380 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----CHHHHHHHHHHHhhceEEecCCCCceee
Confidence 44556632211 2234444444 79999999887 4455666777777655444444444457
Q ss_pred cEEEEEecCCC--CCCcH-----HHHhcccccccCCCCCHHHHHH----HHHHHHhhcc----c-CCcccHHHHHHHcC-
Q 000925 1060 RVLVLAATNRP--FDLDE-----AVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L-ASDVDLEGIANMAD- 1122 (1222)
Q Consensus 1060 ~VlVIaTTN~p--~~Ld~-----aLlrRF~~~I~I~lPd~eeR~e----ILk~lL~k~~----l-~sdidl~~LA~~t~- 1122 (1222)
.|.||+|||+. +.+.. .+.=|+ .++.+.+|...+|.+ +..+++.+.. . ...+.-+.++....
T Consensus 381 DVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y 459 (560)
T COG3829 381 DVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRY 459 (560)
T ss_pred EEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhC
Confidence 89999999963 22222 222266 478888899888865 4445555421 1 11122223332221
Q ss_pred --CCcHHHHHHHHHHHHh
Q 000925 1123 --GYSGSDLKNLCVTAAH 1138 (1222)
Q Consensus 1123 --GySg~DL~~L~~~Aa~ 1138 (1222)
--+.++|.|++.+++.
T Consensus 460 ~WPGNVRELeNviER~v~ 477 (560)
T COG3829 460 DWPGNVRELENVIERAVN 477 (560)
T ss_pred CCCchHHHHHHHHHHHHh
Confidence 2245788888888775
No 177
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=1e-10 Score=134.10 Aligned_cols=113 Identities=23% Similarity=0.355 Sum_probs=100.6
Q ss_pred CcceeeccccCCCCceeeecceeEEcccCccceeecCCCCCccceEEEEee-----------cCCcceEEEEEecCcceE
Q 000925 132 IPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIE-----------NGGPSGALLEITGGKGEV 200 (1222)
Q Consensus 132 ~pW~rL~s~~~~~p~~~i~~~~~t~G~~~~cd~~~~~~~~s~~~c~l~~~~-----------~~g~~~~~le~~~~~G~v 200 (1222)
.||+||+-..-..+++.+.+.+|||||+..||+.++.+.+|+.|-++.... .+....+||+|+++|||
T Consensus 44 ~~r~r~~~v~~~~~~~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~nGT- 122 (475)
T KOG0615|consen 44 KPRARLVGVRRGIKSIDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRNGT- 122 (475)
T ss_pred cchhhhcceeeccccceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccCcc-
Confidence 389999999999999999999999999999999999999999888776551 23455899999999999
Q ss_pred EEcCeecCCCceEEeeCCCEEEEccCCCeeEEeeecCcccCCCCC
Q 000925 201 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDTLAAPG 245 (1222)
Q Consensus 201 ~vNg~~~~k~~~~~L~~gdev~f~~~~~~ayif~~l~~~~~~~~~ 245 (1222)
+||-+.++|+....|+|||||.++.+.+++++|.+++.+....+.
T Consensus 123 ~VN~e~i~k~~~r~lkN~dei~is~p~~~~~v~~~~s~d~~~~~p 167 (475)
T KOG0615|consen 123 FVNDEMIGKGLSRILKNGDEISISIPALKIFVFEDLSRDSSKVPP 167 (475)
T ss_pred cccHhHhhccccccccCCCEEEeccchhheeeeecccchhccCcc
Confidence 599999999999999999999999999999999999766654444
No 178
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.08 E-value=3.3e-10 Score=100.91 Aligned_cols=67 Identities=31% Similarity=0.486 Sum_probs=59.1
Q ss_pred eEEcccCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEEcCeecCCCceEEeeCCCEEEEc
Q 000925 154 FTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (1222)
Q Consensus 154 ~t~G~~~~cd~~~~~~~~s~~~c~l~~~~~~g~~~~~le~~-~~~G~v~vNg~~~~k~~~~~L~~gdev~f~ 224 (1222)
|+|||+..||+.|+++.+|..||.|...+. ..++|++. +.||| +|||+.+.++..+.|.+||+|.|+
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~---~~~~i~d~~s~ngt-~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD---GQFYIEDLGSTNGT-FVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT---EEEEEEESSSSS-E-EETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece---eeEEEEeCCCCCcE-EECCEEcCCCCEEECCCCCEEEcC
Confidence 799999999999999999999999998754 23899996 58888 699999999999999999999985
No 179
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=3.4e-09 Score=131.67 Aligned_cols=183 Identities=20% Similarity=0.254 Sum_probs=128.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC--------------
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 981 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 981 (1222)
..+|++|+|++.+++.|...+.. .+.++.+|||||+|+|||++|+.+|+.+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 36899999999999999988762 223456999999999999999999998753
Q ss_pred -----------cEEEEeccccccccccchHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchHHHHHHHHHhH
Q 000925 982 -----------NFINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1046 (1222)
Q Consensus 982 -----------~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~l~~il~~L 1046 (1222)
+++.+++.. ......++.+...+...+ ..|++|||+|.|- ....+.|
T Consensus 80 sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naL 141 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAF 141 (614)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHH
Confidence 233333221 112345666666554322 3599999999882 1234455
Q ss_pred hhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCc
Q 000925 1047 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1125 (1222)
Q Consensus 1047 l~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GyS 1125 (1222)
+..++.. ...+++|++|+.+..+.+++++|+ .++.|..++.++-..+++.++.++++. ++..+..|+..+.|.
T Consensus 142 LK~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gd- 215 (614)
T PRK14971 142 LKTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGG- 215 (614)
T ss_pred HHHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 5555542 245667777777789999999998 579999999999999999988887765 344577888888663
Q ss_pred HHHHHHHHHH
Q 000925 1126 GSDLKNLCVT 1135 (1222)
Q Consensus 1126 g~DL~~L~~~ 1135 (1222)
.+++.+++..
T Consensus 216 lr~al~~Lek 225 (614)
T PRK14971 216 MRDALSIFDQ 225 (614)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 180
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.07 E-value=6.9e-09 Score=121.95 Aligned_cols=168 Identities=20% Similarity=0.317 Sum_probs=114.8
Q ss_pred CccceEECCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcC
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1029 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1029 (1222)
.+.++|||+.|.|||+|++|++++. +..++.+....++..++......-..-|..-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 3569999999999999999999887 34577777666655544332222233455545 5579999999998654
Q ss_pred CCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCC---CcHHHHhcccc--cccCCCCCHHHHHHHHHHHHh
Q 000925 1030 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLPR--RLMVNLPDAPNREKIIRVILA 1104 (1222)
Q Consensus 1030 r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~~--~I~I~lPd~eeR~eILk~lL~ 1104 (1222)
.. .++....+++.+... ++-+|+.+...|.. +.+.+++||.. ++.+..|+.+.|..||+....
T Consensus 191 ~~---~qeefFh~FN~l~~~---------~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 191 ER---TQEEFFHTFNALLEN---------GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hh---HHHHHHHHHHHHHhc---------CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 32 355666666666522 44455555555654 45899999865 677888999999999999777
Q ss_pred hcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000925 1105 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1137 (1222)
Q Consensus 1105 k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~Aa 1137 (1222)
...+. ++..+..+|..... +.++|..++....
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~ 291 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLD 291 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHH
Confidence 76554 55556777777653 5566665555443
No 181
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.06 E-value=1.1e-09 Score=126.90 Aligned_cols=176 Identities=17% Similarity=0.223 Sum_probs=105.0
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----cccchH-------HHHHHHHHHHHhcCCcEEEE
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGE-------KYVKAVFSLASKIAPSVVFV 1020 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~-----~~G~se-------~~I~~lF~~A~k~~PsILfI 1020 (1222)
..|||+|++||||+++|++|.... +.||+.++|..+... .||... ..-.++|..|. .++|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCEEEe
Confidence 469999999999999999997765 579999999875332 222110 01122344443 489999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000925 1021 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1093 (1222)
Q Consensus 1021 DEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~I~lPd~e 1093 (1222)
|||+.| +...+..+.++++.-.....|.......++.||++|+.. ..+.+.+..||. .+.|.+|...
T Consensus 100 dei~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLR 173 (329)
T TIGR02974 100 DELATA-----SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLR 173 (329)
T ss_pred CChHhC-----CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchh
Confidence 999998 333344444443332211112111223568999999753 245567777884 5778888888
Q ss_pred HHHH----HHHHHHhhc----ccC--CcccHHH---HHHHcCCCcHHHHHHHHHHHHhhh
Q 000925 1094 NREK----IIRVILAKE----ELA--SDVDLEG---IANMADGYSGSDLKNLCVTAAHCP 1140 (1222)
Q Consensus 1094 eR~e----ILk~lL~k~----~l~--sdidl~~---LA~~t~GySg~DL~~L~~~Aa~~a 1140 (1222)
+|.+ ++++++.+. ... ..+.-+. |....=.-+.++|+++++.|+..+
T Consensus 174 eR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 174 ERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 8755 445555432 111 1233333 333322235578888888877644
No 182
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.04 E-value=1.2e-09 Score=126.36 Aligned_cols=200 Identities=19% Similarity=0.174 Sum_probs=118.9
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccccc--
Q 000925 919 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-- 993 (1222)
Q Consensus 919 fddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s-- 993 (1222)
+++++|.....+.+.+.+.... .....|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a------------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 5678888888888877765311 122469999999999999999998665 57999999987532
Q ss_pred ---ccccchHH-------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEE
Q 000925 994 ---KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1063 (1222)
Q Consensus 994 ---~~~G~se~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlV 1063 (1222)
.+||.... .....|..| ..+.|||||||.| +...+..+..+++.-.....+.....+.++.|
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~Ri 144 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----PMLVQEKLLRVIEYGELERVGGSQPLQVNVRL 144 (326)
T ss_pred HHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEEE
Confidence 22332110 012234333 3489999999998 32333333333322111111111111246889
Q ss_pred EEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhcc----cC--CcccHHHHHHHcC---C
Q 000925 1064 LAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----LA--SDVDLEGIANMAD---G 1123 (1222)
Q Consensus 1064 IaTTN~p-------~~Ld~aLlrRF~~~I~I~lPd~eeR~e----ILk~lL~k~~----l~--sdidl~~LA~~t~---G 1123 (1222)
|++|+.. ..+.+.+..||. .+.|.+|...+|.+ ++++++.+.. .. ..+.-+.+..... -
T Consensus 145 I~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WP 223 (326)
T PRK11608 145 VCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWP 223 (326)
T ss_pred EEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCC
Confidence 9988753 356677777883 57788888888855 5555554421 11 1233333333322 2
Q ss_pred CcHHHHHHHHHHHHhh
Q 000925 1124 YSGSDLKNLCVTAAHC 1139 (1222)
Q Consensus 1124 ySg~DL~~L~~~Aa~~ 1139 (1222)
-+.++|+++++.|+..
T Consensus 224 GNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 224 GNIRELKNVVERSVYR 239 (326)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 3557888888877654
No 183
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=7.8e-09 Score=118.81 Aligned_cols=172 Identities=18% Similarity=0.290 Sum_probs=115.1
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc--------EEEEecc
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------FINISMS 989 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~--------fi~v~~s 989 (1222)
+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 689999999999999887752 2234578999999999999999999987432 2333221
Q ss_pred ccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEE
Q 000925 990 SITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1065 (1222)
Q Consensus 990 ~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIa 1065 (1222)
.+..+ .-..++.+...+.. ....|++||++|.|- ....+.|+..++. ++..+++|.
T Consensus 69 --~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------~~a~naLLK~LEe----pp~~t~~il 128 (313)
T PRK05564 69 --NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------EQAQNAFLKTIEE----PPKGVFIIL 128 (313)
T ss_pred --cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCCCeEEEE
Confidence 11111 12345555554432 234699999999882 2234556666654 235566666
Q ss_pred ecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcH
Q 000925 1066 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1066 TTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg 1126 (1222)
+|+.++.+.+++++|+ ..+.+..|+.++-..+++..+.. .++..+..++..+.|-.+
T Consensus 129 ~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 129 LCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYND---IKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCHH
Confidence 7778899999999999 58899999998887777655431 223445566666666444
No 184
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.01 E-value=3.3e-09 Score=114.24 Aligned_cols=187 Identities=23% Similarity=0.312 Sum_probs=125.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh-C----CcEEEEeccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G----ANFINISMSS 990 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el-g----~~fi~v~~s~ 990 (1222)
...++||+|.++..+.|.-... .| .- .+++|.||||+|||+-+.++|+++ | --+.++|.++
T Consensus 23 P~~l~dIVGNe~tv~rl~via~-----------~g-nm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAK-----------EG-NM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHH-----------cC-CC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 3567899999999988877554 22 22 489999999999999999999998 3 2356677665
Q ss_pred cccccccchHHHHHHHHHHHH-hcCC---cEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEe
Q 000925 991 ITSKWFGEGEKYVKAVFSLAS-KIAP---SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1066 (1222)
Q Consensus 991 L~s~~~G~se~~I~~lF~~A~-k~~P---sILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaT 1066 (1222)
-.+ +..-...+ ..|..-+ ..+| .||++||.|++ ..+.|+++++.+.-.. ....+..+
T Consensus 89 eRG--IDvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSM-----T~gAQQAlRRtMEiyS-----------~ttRFala 149 (333)
T KOG0991|consen 89 ERG--IDVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSM-----TAGAQQALRRTMEIYS-----------NTTRFALA 149 (333)
T ss_pred ccc--cHHHHHHH-HHHHHhhccCCCCceeEEEeeccchh-----hhHHHHHHHHHHHHHc-----------ccchhhhh
Confidence 322 11111222 2333332 2233 49999999999 4567778888765432 33567788
Q ss_pred cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 000925 1067 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1136 (1222)
Q Consensus 1067 TN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~A 1136 (1222)
+|..+.+-+.+.+|+ ..+.+...+..+-..-+....+.+.+. .+.-++.+....+|.....|.+|-...
T Consensus 150 CN~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 150 CNQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTV 219 (333)
T ss_pred hcchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHh
Confidence 999999989999988 355666666665555555555555544 455677777777787777777765443
No 185
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.5e-09 Score=131.91 Aligned_cols=182 Identities=21% Similarity=0.377 Sum_probs=134.8
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 987 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v~ 987 (1222)
.++-++|.++-+..+.+.+.. +..++-+|.|+||+|||.++..+|... +..++.++
T Consensus 168 klDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 456788888888777776652 222567999999999999999999876 56788898
Q ss_pred cccccc--ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch-HHHHHHHHHhHhhhccCCcccCCCcEEEE
Q 000925 988 MSSITS--KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLVL 1064 (1222)
Q Consensus 988 ~s~L~s--~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-~e~l~~il~~Ll~~ldgl~~k~~~~VlVI 1064 (1222)
+..+.. +|-|+.|..++.+..+..+..+.||||||||.+.+.....+. ..+.+ ++.-.+ .++.+.+|
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaN-iLKPaL---------ARGeL~~I 303 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAAN-LLKPAL---------ARGELRCI 303 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhh-hhHHHH---------hcCCeEEE
Confidence 887654 588999999999999999988999999999999876654332 22222 222111 23668889
Q ss_pred EecCC-----CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-----CcccHHHHHHHcCCC
Q 000925 1065 AATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 1124 (1222)
Q Consensus 1065 aTTN~-----p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-----sdidl~~LA~~t~Gy 1124 (1222)
|+|.- ...-|+++-||| ..|.+.-|+.++-..||+.+-.....+ .+..+...+.++.-|
T Consensus 304 GATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 88853 346789999999 578999999999999999876653222 344455555555544
No 186
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.00 E-value=1.2e-09 Score=129.79 Aligned_cols=206 Identities=21% Similarity=0.259 Sum_probs=138.1
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccc--
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-- 992 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~-- 992 (1222)
.+.+++|....++++.+.+.. . ....-.|||+|++||||..+|++|.... +.|||.+||..+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~k----------v--A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK----------V--APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH----------H--hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 456799999999999887753 1 1122469999999999999999998776 6799999997643
Q ss_pred ---cccccchHH-------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEE
Q 000925 993 ---SKWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1062 (1222)
Q Consensus 993 ---s~~~G~se~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~Vl 1062 (1222)
+..||.... .-.+.|+.|.. +.||||||..| +...|..+-+++++-....-|-....+-+|.
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----PLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----CHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence 335553221 22235665555 89999999988 4445556666666554444444334457899
Q ss_pred EEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhc----cc-CCcccHHHHHHHcC-CC-
Q 000925 1063 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL-ASDVDLEGIANMAD-GY- 1124 (1222)
Q Consensus 1063 VIaTTN~p-------~~Ld~aLlrRF~~~I~I~lPd~eeR~e----ILk~lL~k~----~l-~sdidl~~LA~~t~-Gy- 1124 (1222)
||++||.. ..+-+.+.-|+ .++.+.+|...+|.+ ++++|+++. +. ...+.-+.++.+.. .|
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 357 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWP 357 (464)
T ss_pred EEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999863 23344555577 588999999988876 556666552 11 23444555555544 23
Q ss_pred -cHHHHHHHHHHHHhhhhHHH
Q 000925 1125 -SGSDLKNLCVTAAHCPIREI 1144 (1222)
Q Consensus 1125 -Sg~DL~~L~~~Aa~~airri 1144 (1222)
+.++|.|++++++..+-...
T Consensus 358 GNVREL~N~ver~~il~~~~~ 378 (464)
T COG2204 358 GNVRELENVVERAVILSEGPE 378 (464)
T ss_pred hHHHHHHHHHHHHHhcCCccc
Confidence 44788888888776654443
No 187
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=98.99 E-value=1.7e-09 Score=102.40 Aligned_cols=97 Identities=25% Similarity=0.418 Sum_probs=82.0
Q ss_pred ceeeccccC--CCCceeeec-ceeEEcccCcc-ceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEEcCeecCC
Q 000925 134 WARLISQCS--QNSHLSMTG-AVFTVGHNRQC-DLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPK 209 (1222)
Q Consensus 134 W~rL~s~~~--~~p~~~i~~-~~~t~G~~~~c-d~~~~~~~~s~~~c~l~~~~~~g~~~~~le~~~~~G~v~vNg~~~~k 209 (1222)
|+.|.++.. ....+.|.. ..|+|||+..| |+.|+++.+|..||.|.+...+ ...+++..+.||+ +|||+.+.+
T Consensus 1 ~~~L~~~~~~~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~~--~~~~~~~~s~~g~-~vn~~~~~~ 77 (102)
T cd00060 1 VPRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDG--GVVLIDLGSTNGT-FVNGQRVSP 77 (102)
T ss_pred CeEEEEecCCCceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCCC--CEEEEECCCCCCe-EECCEECCC
Confidence 566777765 567888888 99999999999 9999999999999999987543 3478899999999 599999999
Q ss_pred CceEEeeCCCEEEEccCCCeeEEee
Q 000925 210 DSQVVLRGGDELVFSPSGKHSYIFQ 234 (1222)
Q Consensus 210 ~~~~~L~~gdev~f~~~~~~ayif~ 234 (1222)
+.+++|.+||+|.|+. +.+.|.|+
T Consensus 78 ~~~~~l~~gd~i~ig~-~~~~~~~~ 101 (102)
T cd00060 78 GEPVRLRDGDVIRLGN-TSISFRFE 101 (102)
T ss_pred CCcEECCCCCEEEECC-eEEEEEEe
Confidence 8899999999999976 45555554
No 188
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.99 E-value=2e-09 Score=126.52 Aligned_cols=201 Identities=24% Similarity=0.280 Sum_probs=135.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccc-
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 991 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L- 991 (1222)
...+.+|+|....+.++.+.+.. . ......|||.|++||||..+|++|-+.. +.||+.+||+.+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~-------V-----A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEV-------V-----AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred hcccccceecCHHHHHHHHHHHH-------H-----hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 55777899999999888887763 1 1123469999999999999999998877 689999999764
Q ss_pred ----ccccccchHHHHHHHHHHHHhcC--------CcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCC
Q 000925 992 ----TSKWFGEGEKYVKAVFSLASKIA--------PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1059 (1222)
Q Consensus 992 ----~s~~~G~se~~I~~lF~~A~k~~--------PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~ 1059 (1222)
.+..||. .++.|.-|.... .+-||+|||..| +...|..+-+++++--.+.-|-....+.
T Consensus 287 esLlESELFGH----eKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----PL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 287 ESLLESELFGH----EKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----PLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred hHHHHHHHhcc----cccccccchhccCcceeecCCCeEechhhccC-----CHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 4455663 444555444332 279999999887 5566777777777665444443333357
Q ss_pred cEEEEEecCCCCCCcHHHHh---------cccccccCCCCCHHHHHH----HHHHHHhhc----cc-C---CcccHHHHH
Q 000925 1060 RVLVLAATNRPFDLDEAVVR---------RLPRRLMVNLPDAPNREK----IIRVILAKE----EL-A---SDVDLEGIA 1118 (1222)
Q Consensus 1060 ~VlVIaTTN~p~~Ld~aLlr---------RF~~~I~I~lPd~eeR~e----ILk~lL~k~----~l-~---sdidl~~LA 1118 (1222)
.|.||++||+ +|..++.. |+ .++.+.+|...+|.+ +.++|+++. +. . +...++.|.
T Consensus 358 DVRiIAATNR--DL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~ 434 (550)
T COG3604 358 DVRVIAATNR--DLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLS 434 (550)
T ss_pred EEEEEeccch--hHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Confidence 8999999997 33333333 44 366777888888754 445555542 22 1 122233343
Q ss_pred HHcCCCcHHHHHHHHHHHHhhh
Q 000925 1119 NMADGYSGSDLKNLCVTAAHCP 1140 (1222)
Q Consensus 1119 ~~t~GySg~DL~~L~~~Aa~~a 1140 (1222)
...---+.++|++++++|+..+
T Consensus 435 ~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 435 SYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cCCCCCcHHHHHHHHHHHHHHh
Confidence 3332336689999999999855
No 189
>PRK09087 hypothetical protein; Validated
Probab=98.99 E-value=6.2e-09 Score=114.56 Aligned_cols=136 Identities=18% Similarity=0.218 Sum_probs=92.7
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchH
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1036 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~ 1036 (1222)
.++|+||+|+|||+|+++++...++.++... .+. ..++..... .+|+|||++.+- ..+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~~-----------~~~~~~~~~---~~l~iDDi~~~~------~~~ 103 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHPN--EIG-----------SDAANAAAE---GPVLIEDIDAGG------FDE 103 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hcc-----------hHHHHhhhc---CeEEEECCCCCC------CCH
Confidence 4999999999999999999988766544332 211 111111112 589999999761 224
Q ss_pred HHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC--C-CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhcccC-C
Q 000925 1037 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--D-LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-S 1110 (1222)
Q Consensus 1037 e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~--~-Ld~aLlrRF~--~~I~I~lPd~eeR~eILk~lL~k~~l~-s 1110 (1222)
+.+..+++.+.. .++.+||+++..|. . ..+.+++||. .++.+..|+.++|.++++..+....+. +
T Consensus 104 ~~lf~l~n~~~~---------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~ 174 (226)
T PRK09087 104 TGLFHLINSVRQ---------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVD 174 (226)
T ss_pred HHHHHHHHHHHh---------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 445555555542 14456666665543 2 3578999984 578899999999999999999876553 5
Q ss_pred cccHHHHHHHcCC
Q 000925 1111 DVDLEGIANMADG 1123 (1222)
Q Consensus 1111 didl~~LA~~t~G 1123 (1222)
+..++.|+....|
T Consensus 175 ~ev~~~La~~~~r 187 (226)
T PRK09087 175 PHVVYYLVSRMER 187 (226)
T ss_pred HHHHHHHHHHhhh
Confidence 5667788887763
No 190
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.98 E-value=1.1e-09 Score=134.54 Aligned_cols=209 Identities=20% Similarity=0.225 Sum_probs=123.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 992 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~ 992 (1222)
..+|++++|.....+.+.+.+.... .....|||+|++||||+++|++|.... +.+|+.++|..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVA------------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3578899999988888888775311 122469999999999999999999875 5799999998763
Q ss_pred cc-----cccchHHH-------HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCc
Q 000925 993 SK-----WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1060 (1222)
Q Consensus 993 s~-----~~G~se~~-------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~ 1060 (1222)
.. .||..... ..+.|..| ..++||||||+.| +...+..+.+++++-.....+-......+
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 331 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----SPAFQAKLLRVLQEGEFERVGGNRTLKVD 331 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----CHHHHHHHHHHHhcCcEEECCCCceEeec
Confidence 32 22211100 01123333 3589999999998 33333333333322111111111111245
Q ss_pred EEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHH----HHHHHHHhhcc----cC---CcccHHHHHHHcC
Q 000925 1061 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKEE----LA---SDVDLEGIANMAD 1122 (1222)
Q Consensus 1061 VlVIaTTN~p-------~~Ld~aLlrRF~~~I~I~lPd~eeR~----eILk~lL~k~~----l~---sdidl~~LA~~t~ 1122 (1222)
+.+|++|+.. ..+.+.+..|+. .+.|.+|...+|. .|+++++.+.. .. ++..+..|....=
T Consensus 332 ~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~W 410 (534)
T TIGR01817 332 VRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKW 410 (534)
T ss_pred EEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCC
Confidence 8899988753 245566666773 5677788877664 45666665422 11 2222334444332
Q ss_pred CCcHHHHHHHHHHHHhhhhHHHH
Q 000925 1123 GYSGSDLKNLCVTAAHCPIREIL 1145 (1222)
Q Consensus 1123 GySg~DL~~L~~~Aa~~airrii 1145 (1222)
.-+.++|+++++.|+..+-...+
T Consensus 411 PGNvrEL~~v~~~a~~~~~~~~I 433 (534)
T TIGR01817 411 PGNVRELENCLERTATLSRSGTI 433 (534)
T ss_pred CChHHHHHHHHHHHHHhCCCCcc
Confidence 33568888888888765433333
No 191
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.98 E-value=2.2e-09 Score=124.17 Aligned_cols=142 Identities=26% Similarity=0.422 Sum_probs=96.9
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc--ccccchHHHH----HHHHHHHHh-cCC---cEEEEccchh
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEGEKYV----KAVFSLASK-IAP---SVVFVDEVDS 1025 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s--~~~G~se~~I----~~lF~~A~k-~~P---sILfIDEID~ 1025 (1222)
.++||.||||||||+||+.+|..++.+|+.+.|..-+. ..+|...-.. ...|..... .-. +|+|+|||++
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 57999999999999999999999999999999964221 2222211110 000100000 001 4999999986
Q ss_pred hhcCCCCCchHHHHHHHHHhHhhhccCCc-ccCCCcEEEEEecC-----CCCCCcHHHHhcccccccCCCC-CHHHHHHH
Q 000925 1026 MLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATN-----RPFDLDEAVVRRLPRRLMVNLP-DAPNREKI 1098 (1222)
Q Consensus 1026 L~~~r~~~~~~e~l~~il~~Ll~~ldgl~-~k~~~~VlVIaTTN-----~p~~Ld~aLlrRF~~~I~I~lP-d~eeR~eI 1098 (1222)
. .+..+..+..++++....+.+.. ..-+..++||+|+| ....|++++++||...+.++.| ...+...+
T Consensus 124 a-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i 198 (329)
T COG0714 124 A-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERII 198 (329)
T ss_pred C-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHH
Confidence 5 44556666666776666666666 55567899999999 4567899999999888999999 44445545
Q ss_pred HHHH
Q 000925 1099 IRVI 1102 (1222)
Q Consensus 1099 Lk~l 1102 (1222)
+...
T Consensus 199 ~~~~ 202 (329)
T COG0714 199 LARV 202 (329)
T ss_pred HHhC
Confidence 4444
No 192
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.97 E-value=1.9e-09 Score=131.57 Aligned_cols=202 Identities=22% Similarity=0.259 Sum_probs=121.1
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 993 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s 993 (1222)
.+|++|+|....++.+.+.+.. +.. ....|||+|++||||+++|++|.+.. +.||+.++|..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~A~-----~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------YAR-----SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------HhC-----CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 4688999999888888887752 111 12469999999999999999998765 67999999987532
Q ss_pred -----ccccchHH--------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCc
Q 000925 994 -----KWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1060 (1222)
Q Consensus 994 -----~~~G~se~--------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~ 1060 (1222)
..||..+. .-..+|+.|. .+.||||||+.| +...+..+.+++++-....-|-....+.+
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~d 348 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----PLPLQTRLLRVLEEREVVRVGGTEPVPVD 348 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----CHHHHHHHHHHHhcCcEEecCCCceeeec
Confidence 23332111 1223555554 389999999998 33344444444433211111111112245
Q ss_pred EEEEEecCCCC-------CCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhcccC--CcccHHH----------H
Q 000925 1061 VLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEELA--SDVDLEG----------I 1117 (1222)
Q Consensus 1061 VlVIaTTN~p~-------~Ld~aLlrRF~~~I~I~lPd~eeR~e----ILk~lL~k~~l~--sdidl~~----------L 1117 (1222)
+.+|++|+..- .+...+..|+ ..+.+.+|...+|.+ ++.+++.+.... -...-+. |
T Consensus 349 vRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L 427 (526)
T TIGR02329 349 VRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPL 427 (526)
T ss_pred ceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHH
Confidence 78999987541 2333444466 357788899888765 555666543210 1122122 2
Q ss_pred HHHcCCCcHHHHHHHHHHHHhh
Q 000925 1118 ANMADGYSGSDLKNLCVTAAHC 1139 (1222)
Q Consensus 1118 A~~t~GySg~DL~~L~~~Aa~~ 1139 (1222)
....=-.+.++|++++++++..
T Consensus 428 ~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 428 QRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HhCCCCchHHHHHHHHHHHHHh
Confidence 2222122557888888887754
No 193
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.97 E-value=3e-09 Score=129.91 Aligned_cols=202 Identities=20% Similarity=0.286 Sum_probs=121.7
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHH-----------hCCcEEE
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----------AGANFIN 985 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~e-----------lg~~fi~ 985 (1222)
.+|++|+|....++.+.+.+.. +.. ....|||+|++||||+++|++|.+. .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~A~-----s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------YAR-----SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------HhC-----CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 3688899999888888887652 111 2246999999999999999999877 3679999
Q ss_pred Eecccccc-----ccccchHH--------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccC
Q 000925 986 ISMSSITS-----KWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1052 (1222)
Q Consensus 986 v~~s~L~s-----~~~G~se~--------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldg 1052 (1222)
+||..+.. ..||..+. .-..+|+.|.. +.||||||+.| +...|..+.+++++-....-|
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~L-----p~~~Q~kLl~~L~e~~~~r~G 355 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEM-----PLPLQTRLLRVLEEKEVTRVG 355 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhC-----CHHHHHHHHhhhhcCeEEecC
Confidence 99987532 23342211 11235555543 89999999998 333444444444332111111
Q ss_pred CcccCCCcEEEEEecCCCC-------CCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhcc--cCCcccHH----
Q 000925 1053 LRTKDKERVLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE--LASDVDLE---- 1115 (1222)
Q Consensus 1053 l~~k~~~~VlVIaTTN~p~-------~Ld~aLlrRF~~~I~I~lPd~eeR~e----ILk~lL~k~~--l~sdidl~---- 1115 (1222)
-....+.++.||++|+..- .+.+.+.-|+ ..+.+.+|...+|.+ ++++++.+.. ......-+
T Consensus 356 ~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 434 (538)
T PRK15424 356 GHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQG 434 (538)
T ss_pred CCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 1111235678999997541 2333444566 367888999888765 5566665421 11111111
Q ss_pred ------HHHHHcCCCcHHHHHHHHHHHHhh
Q 000925 1116 ------GIANMADGYSGSDLKNLCVTAAHC 1139 (1222)
Q Consensus 1116 ------~LA~~t~GySg~DL~~L~~~Aa~~ 1139 (1222)
.|....=-.+.++|++++++++..
T Consensus 435 ~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 435 LQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 111111122558888988887763
No 194
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=9.4e-09 Score=119.99 Aligned_cols=188 Identities=18% Similarity=0.156 Sum_probs=120.5
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-------EEEE---
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------FINI--- 986 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~-------fi~v--- 986 (1222)
..+++++|++.+.+.|...+.. .+-++.+||+||+|+|||++|+.+|+.+.+. ....
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 5788999999999999998763 2334679999999999999999999998541 1100
Q ss_pred -ec-----------cccc--cccccc---------hHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchHHHH
Q 000925 987 -SM-----------SSIT--SKWFGE---------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAM 1039 (1222)
Q Consensus 987 -~~-----------s~L~--s~~~G~---------se~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~e~l 1039 (1222)
.| +++. ..-.+. .-..++.+..... .....|++|||+|.| +
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----~------- 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----N------- 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----C-------
Confidence 11 1111 000000 1123444333322 223469999999998 2
Q ss_pred HHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHH
Q 000925 1040 RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIAN 1119 (1222)
Q Consensus 1040 ~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~ 1119 (1222)
....+.|+..++.. ..++++|..|+.+..+.+++++|+ ..+.++.|+.++-..+++....... .++..+..++.
T Consensus 155 ~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~ 228 (351)
T PRK09112 155 RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQ 228 (351)
T ss_pred HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHH
Confidence 22334455555542 245566666777888899999999 6899999999999999987533322 22344667777
Q ss_pred HcCCCcHHHHHHHHHHH
Q 000925 1120 MADGYSGSDLKNLCVTA 1136 (1222)
Q Consensus 1120 ~t~GySg~DL~~L~~~A 1136 (1222)
.+.|.....+ ++....
T Consensus 229 ~s~G~pr~Al-~ll~~~ 244 (351)
T PRK09112 229 RSKGSVRKAL-LLLNYG 244 (351)
T ss_pred HcCCCHHHHH-HHHhcC
Confidence 7776554444 444433
No 195
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.96 E-value=3.1e-09 Score=129.84 Aligned_cols=204 Identities=16% Similarity=0.223 Sum_probs=124.4
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccccc-
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 993 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s- 993 (1222)
.+.+++|....++.+.+.+.. + ......|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~-------~-----a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV-------V-----AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH-------H-----hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 456788988888888887763 1 1123569999999999999999998875 57999999987643
Q ss_pred ----ccccchHH-------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEE
Q 000925 994 ----KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1062 (1222)
Q Consensus 994 ----~~~G~se~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~Vl 1062 (1222)
..||.... .....|..|. .+.|||||||.| +...+..+.+++++-....-+-.......+.
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGEL-----PLALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhC-----CHHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 22332111 0112344443 489999999998 3333333333333211111111111234789
Q ss_pred EEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhccc-----CCccc---HHHHHHHcCC
Q 000925 1063 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEEL-----ASDVD---LEGIANMADG 1123 (1222)
Q Consensus 1063 VIaTTN~p-------~~Ld~aLlrRF~~~I~I~lPd~eeR~e----ILk~lL~k~~l-----~sdid---l~~LA~~t~G 1123 (1222)
||++|+.. ..+...+..|+ ..+.|.+|...+|.+ ++++++.+... ...+. +..|....=-
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 403 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWP 403 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999764 24556666677 357788899888855 44555544211 11233 3333333323
Q ss_pred CcHHHHHHHHHHHHhhhhH
Q 000925 1124 YSGSDLKNLCVTAAHCPIR 1142 (1222)
Q Consensus 1124 ySg~DL~~L~~~Aa~~air 1142 (1222)
.+.++|+++++.|+..+..
T Consensus 404 GNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 404 GNVRELEHVISRAALLARA 422 (509)
T ss_pred CcHHHHHHHHHHHHHhcCC
Confidence 4668999999998875543
No 196
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.96 E-value=1.2e-08 Score=123.76 Aligned_cols=166 Identities=22% Similarity=0.358 Sum_probs=102.0
Q ss_pred CCCcc-ceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHH--------HhcCCcEEEEccc
Q 000925 953 KPCKG-ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA--------SKIAPSVVFVDEV 1023 (1222)
Q Consensus 953 ~Pp~g-ILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A--------~k~~PsILfIDEI 1023 (1222)
+|+.. +||+||||-|||+||+.||+++|+.++++|.++-.+ ...++..+..| ...+|.+|+||||
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEI 396 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEI 396 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecc
Confidence 44433 799999999999999999999999999999987332 12233322222 1257899999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHhHhh----hccCCcccC-------C---CcEEEEEecCCCCCCcHHHH--hcccccccC
Q 000925 1024 DSMLGRRENPGEHEAMRKMKNEFMV----NWDGLRTKD-------K---ERVLVLAATNRPFDLDEAVV--RRLPRRLMV 1087 (1222)
Q Consensus 1024 D~L~~~r~~~~~~e~l~~il~~Ll~----~ldgl~~k~-------~---~~VlVIaTTN~p~~Ld~aLl--rRF~~~I~I 1087 (1222)
|-- ...+.+ ++..++. +..|-.... + -.--|||.||.... |+++ |-|.++++|
T Consensus 397 DGa--------~~~~Vd-vilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f 465 (877)
T KOG1969|consen 397 DGA--------PRAAVD-VILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAF 465 (877)
T ss_pred cCC--------cHHHHH-HHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEe
Confidence 832 112222 2222222 111111100 0 12357788886543 4554 468889999
Q ss_pred CCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000925 1088 NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAH 1138 (1222)
Q Consensus 1088 ~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~ 1138 (1222)
..|......+-|+.++..+++. .|...|+..++ ++..||+..++....
T Consensus 466 ~~p~~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQf 513 (877)
T KOG1969|consen 466 VPPSQSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQF 513 (877)
T ss_pred cCCChhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHH
Confidence 9999888888888888887764 33344444443 334466666665543
No 197
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.96 E-value=5.6e-09 Score=132.00 Aligned_cols=204 Identities=21% Similarity=0.274 Sum_probs=123.8
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 993 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s 993 (1222)
..|++++|....++.+.+.+... . .....|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-------a-----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-------A-----QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-------h-----CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 46788999988888887766531 1 122469999999999999999998765 67999999987532
Q ss_pred -----ccccchH-------HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcE
Q 000925 994 -----KWFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1061 (1222)
Q Consensus 994 -----~~~G~se-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~V 1061 (1222)
.+||... ......|..|. .++||||||+.| +...+..+.+++++-.....+.......++
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDM-----PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhC-----CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 2333211 11123444443 489999999988 333344444443332111111111123578
Q ss_pred EEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhcc----c----CCcccHHHHHHHcC
Q 000925 1062 LVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L----ASDVDLEGIANMAD 1122 (1222)
Q Consensus 1062 lVIaTTN~p-------~~Ld~aLlrRF~~~I~I~lPd~eeR~e----ILk~lL~k~~----l----~sdidl~~LA~~t~ 1122 (1222)
.+|++|+.. ..+...+..|+ ..+.|.+|...+|.+ ++++++.+.. . .+...+..|....=
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~W 591 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEW 591 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCC
Confidence 999999753 23444455566 357788999888865 4555555421 1 12222333333332
Q ss_pred CCcHHHHHHHHHHHHhhhh
Q 000925 1123 GYSGSDLKNLCVTAAHCPI 1141 (1222)
Q Consensus 1123 GySg~DL~~L~~~Aa~~ai 1141 (1222)
-.+.++|++++++|+..+-
T Consensus 592 PGNvrEL~~~i~~a~~~~~ 610 (686)
T PRK15429 592 PGNVRELENVIERAVLLTR 610 (686)
T ss_pred CCcHHHHHHHHHHHHHhCC
Confidence 3356888888888876543
No 198
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.1e-08 Score=116.24 Aligned_cols=200 Identities=22% Similarity=0.284 Sum_probs=127.0
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC-----cEEEEecccccccc
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKW 995 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~-----~fi~v~~s~L~s~~ 995 (1222)
.+.+.++..+++..++...+. + . .|.+++|+|+||||||.+++.++.++.- .++++||..+.+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-------~--~-~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-------G--E-RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-------C--C-CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 478889999999887654332 1 2 2356999999999999999999998833 38999996533221
Q ss_pred ---------------ccch-HHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCC
Q 000925 996 ---------------FGEG-EKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1058 (1222)
Q Consensus 996 ---------------~G~s-e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~ 1058 (1222)
.|.. ......+++...+ ...-||+|||+|.|..+.+ .++..|...... ..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~----~~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGE----NK 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhccc----cc
Confidence 1111 2233334433333 3456999999999964432 334444433222 24
Q ss_pred CcEEEEEecCCC---CCCcHHHHhccc-ccccCCCCCHHHHHHHHHHHHhhc---ccCCcccHHHHHHHcCCC--cHHHH
Q 000925 1059 ERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGY--SGSDL 1129 (1222)
Q Consensus 1059 ~~VlVIaTTN~p---~~Ld~aLlrRF~-~~I~I~lPd~eeR~eILk~lL~k~---~l~sdidl~~LA~~t~Gy--Sg~DL 1129 (1222)
.+|.+|+.+|.. +.+++.+.++|. ..|.|++.+.+|...|++...... ...++..+..+|....-. ..+--
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~a 234 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKA 234 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHH
Confidence 678999999876 477888888763 458899999999999999887642 222333344444433322 23333
Q ss_pred HHHHHHHHhhhhHH
Q 000925 1130 KNLCVTAAHCPIRE 1143 (1222)
Q Consensus 1130 ~~L~~~Aa~~airr 1143 (1222)
..+|..|+..|-++
T Consensus 235 idilr~A~eiAe~~ 248 (366)
T COG1474 235 IDILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHHHHhh
Confidence 35566666555443
No 199
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.93 E-value=2.9e-08 Score=107.88 Aligned_cols=190 Identities=22% Similarity=0.290 Sum_probs=133.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 992 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~ 992 (1222)
.+.+.+|.|.+.+++.|.+.... |.+ ..|.++|||+|..||||++|++|+.++. +..+|+|+-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~-------F~~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQ-------FAE---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHH-------HHc---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 36788999999999999876543 333 3477899999999999999999998887 6778888876654
Q ss_pred cccccchHHHHHHHHHHHHhcC-CcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC
Q 000925 993 SKWFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 993 s~~~G~se~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
.+-.+++..+..+ .-|||+|++-- ..++ . ....|...++|-....+.+|+|-+|+|+.+
T Consensus 126 ---------~Lp~l~~~Lr~~~~kFIlFcDDLSF------e~gd-~----~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 ---------TLPDLVELLRARPEKFILFCDDLSF------EEGD-D----AYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred ---------hHHHHHHHHhcCCceEEEEecCCCC------CCCc-h----HHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 2445555555433 46999999831 1111 1 123344556776666778999999999865
Q ss_pred CCcH----------------------HHHhcccccccCCCCCHHHHHHHHHHHHhhcccCC-cccHH----HHHHHcCCC
Q 000925 1072 DLDE----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-DVDLE----GIANMADGY 1124 (1222)
Q Consensus 1072 ~Ld~----------------------aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~s-didl~----~LA~~t~Gy 1124 (1222)
.|.+ .+-.||...+.|..++.++-.+|+..+.+...+.- +..++ .-|..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4442 22338999999999999999999999999877663 22222 233444567
Q ss_pred cHHHHHHHHHH
Q 000925 1125 SGSDLKNLCVT 1135 (1222)
Q Consensus 1125 Sg~DL~~L~~~ 1135 (1222)
||+--.+.++.
T Consensus 266 SGR~A~QF~~~ 276 (287)
T COG2607 266 SGRVAWQFIRD 276 (287)
T ss_pred ccHhHHHHHHH
Confidence 77655554443
No 200
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=1.3e-08 Score=119.46 Aligned_cols=180 Identities=19% Similarity=0.162 Sum_probs=117.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcE-----------E
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-----------I 984 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f-----------i 984 (1222)
..++++|+|++.+++.|.+.+.. .+.++.+||+||+|+||+++|.++|+.+-+.- .
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 35789999999999999988763 23456799999999999999999999883211 0
Q ss_pred EE----ec-----------cccccccc---cc--------hHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCc
Q 000925 985 NI----SM-----------SSITSKWF---GE--------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPG 1034 (1222)
Q Consensus 985 ~v----~~-----------s~L~s~~~---G~--------se~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~ 1034 (1222)
.+ .| +++.--.. +. .-..++.+...+. ...+.|++|||+|.+ +
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-----~-- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-----N-- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-----C--
Confidence 00 00 11110000 10 1223555444432 235679999999988 1
Q ss_pred hHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCCcccH
Q 000925 1035 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDL 1114 (1222)
Q Consensus 1035 ~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl 1114 (1222)
....+.|+..+... ...+++|.+|+.++.+.+++++|+ ..+.|..|+.++-.+++...... ..+..+
T Consensus 155 -----~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 -----ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -----HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 23344555555542 245677788888888999999998 68899999999988888765321 122223
Q ss_pred HHHHHHcCCCcHHH
Q 000925 1115 EGIANMADGYSGSD 1128 (1222)
Q Consensus 1115 ~~LA~~t~GySg~D 1128 (1222)
..++..+.|-.+.-
T Consensus 222 ~~l~~~s~Gsp~~A 235 (365)
T PRK07471 222 AALAALAEGSVGRA 235 (365)
T ss_pred HHHHHHcCCCHHHH
Confidence 56777776654433
No 201
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.90 E-value=3.6e-09 Score=132.63 Aligned_cols=203 Identities=19% Similarity=0.238 Sum_probs=120.5
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccc-
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT- 992 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~- 992 (1222)
.+|++++|.....+.+.+.+.... .....|||+|++||||+++|++|.+.. +.+|+.++|..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 468899998888777777665311 112459999999999999999998876 4799999998753
Q ss_pred ----cccccch----HHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEE
Q 000925 993 ----SKWFGEG----EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1064 (1222)
Q Consensus 993 ----s~~~G~s----e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVI 1064 (1222)
+.++|.. .......|+.| ..++||||||+.| +...+..+.+++++-....-+.....+.++.||
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----SPELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 2334421 00011123333 3589999999998 333344443433322111111111112368899
Q ss_pred EecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhcc----c---CCcccHHHHHHHcCCCcH
Q 000925 1065 AATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L---ASDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1065 aTTN~p-------~~Ld~aLlrRF~~~I~I~lPd~eeR~e----ILk~lL~k~~----l---~sdidl~~LA~~t~GySg 1126 (1222)
+||+.. ..+.+.+.-|+ ..+.|.+|...+|.+ +++.++.+.. . .++..+..|....=.-+.
T Consensus 462 ~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNv 540 (638)
T PRK11388 462 ATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGND 540 (638)
T ss_pred EeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChH
Confidence 998753 23444555566 367888999888854 4555555421 1 122223334333323356
Q ss_pred HHHHHHHHHHHhhh
Q 000925 1127 SDLKNLCVTAAHCP 1140 (1222)
Q Consensus 1127 ~DL~~L~~~Aa~~a 1140 (1222)
++|+++++.|+..+
T Consensus 541 reL~~~l~~~~~~~ 554 (638)
T PRK11388 541 FELRSVIENLALSS 554 (638)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877643
No 202
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.90 E-value=6.7e-09 Score=127.23 Aligned_cols=205 Identities=22% Similarity=0.257 Sum_probs=122.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 992 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~ 992 (1222)
..+|++++|.....+.+.+.+.. +.. ....|||+|++||||+++|++|.... +.+|+.++|+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~-------~A~-----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARK-------LAM-----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHH-------HhC-----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 46899999998877777765542 111 12459999999999999999987655 4799999998764
Q ss_pred cc-----cccchH-------HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCc
Q 000925 993 SK-----WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1060 (1222)
Q Consensus 993 s~-----~~G~se-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~ 1060 (1222)
.. .||... ....++|+.|. .+.||||||+.| +...+..+.++++.-...-.|-......+
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----SPRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----CHHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 32 233211 11123455544 489999999998 33334444333332111111111112346
Q ss_pred EEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhc----cc-CCcccHHHHHHHcC--
Q 000925 1061 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL-ASDVDLEGIANMAD-- 1122 (1222)
Q Consensus 1061 VlVIaTTN~p-------~~Ld~aLlrRF~~~I~I~lPd~eeR~e----ILk~lL~k~----~l-~sdidl~~LA~~t~-- 1122 (1222)
+.||++|+.. ..+.+.+..|+. .+.+.+|...+|.+ ++++++.+. .. ...+.-+.+.....
T Consensus 340 vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~ 418 (520)
T PRK10820 340 VRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYG 418 (520)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCC
Confidence 8899988653 235566777874 47888888888764 444454432 11 11233334433332
Q ss_pred -CCcHHHHHHHHHHHHhhhh
Q 000925 1123 -GYSGSDLKNLCVTAAHCPI 1141 (1222)
Q Consensus 1123 -GySg~DL~~L~~~Aa~~ai 1141 (1222)
.-+.++|++++.+|+..+-
T Consensus 419 WPGNvreL~nvl~~a~~~~~ 438 (520)
T PRK10820 419 WPGNVRQLKNAIYRALTQLE 438 (520)
T ss_pred CCCHHHHHHHHHHHHHHhCC
Confidence 2255788888888876543
No 203
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.90 E-value=5.8e-09 Score=101.31 Aligned_cols=127 Identities=33% Similarity=0.467 Sum_probs=81.1
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCc---EEEEeccccccc--------------cccchHHHHHHHHHHHHhcCCcEE
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSVV 1018 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~---fi~v~~s~L~s~--------------~~G~se~~I~~lF~~A~k~~PsIL 1018 (1222)
..++|+||||||||++++.+|..+... ++.+++...... ...........++..++...+.||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999764 888877653321 122345577789999998889999
Q ss_pred EEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCC-CCCCcHHHHhcccccccCCCC
Q 000925 1019 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRRLPRRLMVNLP 1090 (1222)
Q Consensus 1019 fIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~-p~~Ld~aLlrRF~~~I~I~lP 1090 (1222)
||||++.+.... ............... .........+|+++|. ....+..+.+|++..+.+..+
T Consensus 83 iiDei~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAE-----QEALLLLLEELRLLL---LLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHH-----HHHHHHhhhhhHHHH---HHHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999884221 111100000000000 0012256788888886 444555566677766666543
No 204
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.90 E-value=1.1e-08 Score=126.74 Aligned_cols=212 Identities=22% Similarity=0.280 Sum_probs=122.3
Q ss_pred ccceEECCCCChHHHHHHHHHHHhC--CcEEEEeccccccccccchH--HHHH--------HHHHHHHhcCCcEEEEccc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGE--KYVK--------AVFSLASKIAPSVVFVDEV 1023 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~v~~s~L~s~~~G~se--~~I~--------~lF~~A~k~~PsILfIDEI 1023 (1222)
.+|||.|+||||||++|++|+..+. .+|+.+.+.......+|... ..+. +++..| ..+|||||||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccch
Confidence 5799999999999999999999875 46888876433333444321 0000 011112 2379999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHhHhhhc--cCCcccCCCcEEEEEecCCCC---CCcHHHHhcccccccCC-CCCHHHHHH
Q 000925 1024 DSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRRLMVN-LPDAPNREK 1097 (1222)
Q Consensus 1024 D~L~~~r~~~~~~e~l~~il~~Ll~~l--dgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~~~I~I~-lPd~eeR~e 1097 (1222)
+.+ ++..+..+..++++-...+ .|.......++.||+|+|..+ .|.+.++.||...+.+. +|+.++|.+
T Consensus 94 ~rl-----~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~e 168 (589)
T TIGR02031 94 NLL-----DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVE 168 (589)
T ss_pred hhC-----CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHH
Confidence 988 3333444444443322112 233333346789999998865 78999999998766554 567888999
Q ss_pred HHHHHHhhcc----cCCcccHHHHHH---HcC--CCcHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHhhccCCCCC
Q 000925 1098 IIRVILAKEE----LASDVDLEGIAN---MAD--GYSGSDLKNLCVTAAHCPI---REILEKEKKERALALAENRASPPL 1165 (1222)
Q Consensus 1098 ILk~lL~k~~----l~sdidl~~LA~---~t~--GySg~DL~~L~~~Aa~~ai---rrii~~~~~e~~~~~~~~~~~~~~ 1165 (1222)
|++.++.... .........+.. ... -.+...+..|+..+....+ |..+...+-.+..+..+++
T Consensus 169 il~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr----- 243 (589)
T TIGR02031 169 IVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGR----- 243 (589)
T ss_pred HHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCC-----
Confidence 9998763321 111111222221 122 1234445555555543222 2223233333334444444
Q ss_pred CCccccccccHHHHHHHHHHh
Q 000925 1166 YSSVDVRPLKMDDFKYAHEQV 1186 (1222)
Q Consensus 1166 ~~~~~~r~Lt~eDF~~Alekv 1186 (1222)
..|+.+|+..|..-+
T Consensus 244 ------~~V~~~Dv~~a~~lv 258 (589)
T TIGR02031 244 ------TEVTEEDLKLAVELV 258 (589)
T ss_pred ------CCCCHHHHHHHHHHH
Confidence 348888888887654
No 205
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.90 E-value=2.9e-10 Score=114.61 Aligned_cols=112 Identities=26% Similarity=0.388 Sum_probs=68.1
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEEeccccc------cccccc--hHHHHHHHHHHHHhcCCcEEEEccchhhhc
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT------SKWFGE--GEKYVKAVFSLASKIAPSVVFVDEVDSMLG 1028 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~------s~~~G~--se~~I~~lF~~A~k~~PsILfIDEID~L~~ 1028 (1222)
+|||+||||||||+||+.+|+.++.+++.+.+.... +.+.-. ........+..|.+ .+.|||||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 489999999999999999999999999999886522 211110 00000111111111 4689999999875
Q ss_pred CCCCCchHHHHHHHHHhHhhhccCCcc---------cCCC------cEEEEEecCCCC----CCcHHHHhcc
Q 000925 1029 RRENPGEHEAMRKMKNEFMVNWDGLRT---------KDKE------RVLVLAATNRPF----DLDEAVVRRL 1081 (1222)
Q Consensus 1029 ~r~~~~~~e~l~~il~~Ll~~ldgl~~---------k~~~------~VlVIaTTN~p~----~Ld~aLlrRF 1081 (1222)
. ..++..++..++.-.. .... .+.+|+|+|+.. .+++++++||
T Consensus 78 ---~-------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ---P-------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ---C-------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 1 2233333333322110 0111 399999999988 9999999998
No 206
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.6e-09 Score=119.52 Aligned_cols=115 Identities=25% Similarity=0.417 Sum_probs=79.0
Q ss_pred Cccc-ccCcHHHHHHHHHHHHccccChhhh-hcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc-c
Q 000925 918 TFDD-IGALENVKDTLKELVMLPLQRPELF-CKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-K 994 (1222)
Q Consensus 918 tfdd-I~Gle~ik~~L~e~v~~pL~~pelf-~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s-~ 994 (1222)
.+++ ++|++..|+.|.-.+....+|-... .+..+.-...+|||.||+|+|||+||+.+|+.++.||...++..|.. .
T Consensus 58 ~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 58 HLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred HhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 3444 7888888887755544322221111 01111122257999999999999999999999999999999988764 5
Q ss_pred cccch-HHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCC
Q 000925 995 WFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRREN 1032 (1222)
Q Consensus 995 ~~G~s-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~ 1032 (1222)
|+|+. |..+..++..| .+...+||||||||.+..+..+
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN 180 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSEN 180 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCC
Confidence 78875 44555666554 3445699999999999865543
No 207
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.89 E-value=2e-08 Score=122.73 Aligned_cols=175 Identities=23% Similarity=0.295 Sum_probs=103.0
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC-cEEEE---eccccccccc
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINI---SMSSITSKWF 996 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~-~fi~v---~~s~L~s~~~ 996 (1222)
.|.|++.++..|.-.+.-.... . ...+...+...+|||+|+||||||++|+++++.+.. .|+.. ++..+....+
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~-~-~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHK-N-LPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCcc-c-cCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 5789999887776555321100 0 001111122246999999999999999999998743 33321 2222211111
Q ss_pred cc---hHHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhc--cCCcccCCCcEEEEEecCCC
Q 000925 997 GE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP 1070 (1222)
Q Consensus 997 G~---se~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~l--dgl~~k~~~~VlVIaTTN~p 1070 (1222)
.. ++..+ .+.+..| ..++|+|||++.+ +...+..+.+++.+-...+ .|....-+.++.||||+|+.
T Consensus 282 ~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l-----~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~ 353 (509)
T smart00350 282 RDPETREFTLEGGALVLA---DNGVCCIDEFDKM-----DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353 (509)
T ss_pred EccCcceEEecCccEEec---CCCEEEEechhhC-----CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCC
Confidence 00 00000 1112222 3489999999988 3333444444433222111 33333345789999999975
Q ss_pred C-------------CCcHHHHhcccccc-cCCCCCHHHHHHHHHHHHhh
Q 000925 1071 F-------------DLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILAK 1105 (1222)
Q Consensus 1071 ~-------------~Ld~aLlrRF~~~I-~I~lPd~eeR~eILk~lL~k 1105 (1222)
+ .|++++++||+.++ ..+.|+.+.+.+|.++.+..
T Consensus 354 ~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 354 GGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 3 68999999998654 44789999999999987654
No 208
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.88 E-value=2.1e-08 Score=106.59 Aligned_cols=144 Identities=18% Similarity=0.201 Sum_probs=96.3
Q ss_pred CCccceEECCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccchHHHHHHHHHH
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 1009 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~elg~~------------------------fi~v~~s~L~s~~~G~se~~I~~lF~~ 1009 (1222)
.++.+||+||+|+|||++|+.+++.+... +..+.... .. .....++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 34679999999999999999999997432 22221110 00 122455555665
Q ss_pred HHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccc
Q 000925 1010 ASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRL 1085 (1222)
Q Consensus 1010 A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I 1085 (1222)
+.. ....||+|||+|.|. ....+.|+..++.. ....++|++|+.+..+.+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 544 234699999999982 11234455555442 245666667777789999999998 589
Q ss_pred cCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCC
Q 000925 1086 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGY 1124 (1222)
Q Consensus 1086 ~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~Gy 1124 (1222)
.+..|+.++..++++.. ++ ++..+..++..+.|.
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGGS 184 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCCC
Confidence 99999999988888765 22 344566777776654
No 209
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=2e-08 Score=115.65 Aligned_cols=180 Identities=14% Similarity=0.219 Sum_probs=119.2
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc----------EEEEe
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FINIS 987 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~----------fi~v~ 987 (1222)
.|++|+|++.+++.|...+.. .+-++.+||+||+|+||+++|.++|+.+-+. +...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 488999999999999998863 2334689999999999999999999987321 11112
Q ss_pred ccccc---------ccc--------cc--------chHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHH
Q 000925 988 MSSIT---------SKW--------FG--------EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEA 1038 (1222)
Q Consensus 988 ~s~L~---------s~~--------~G--------~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~ 1038 (1222)
.+++. +.. .| -.-..++.+...+.. ....|++||++|.|-
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~----------- 137 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN----------- 137 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------
Confidence 22221 000 00 001245555554433 234699999999882
Q ss_pred HHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHH
Q 000925 1039 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 1118 (1222)
Q Consensus 1039 l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA 1118 (1222)
....+.|+..+... + +.++|.+|+.++.|.+++++|+ ..+.|..|+.++-.++++........ +.+...++
T Consensus 138 -~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 22335555555542 2 3466777788899999999998 68999999999998888876432211 22346777
Q ss_pred HHcCCCcHHHHH
Q 000925 1119 NMADGYSGSDLK 1130 (1222)
Q Consensus 1119 ~~t~GySg~DL~ 1130 (1222)
....|-.+..+.
T Consensus 209 ~~a~Gs~~~al~ 220 (314)
T PRK07399 209 ALAQGSPGAAIA 220 (314)
T ss_pred HHcCCCHHHHHH
Confidence 777776555444
No 210
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.85 E-value=3.6e-08 Score=114.89 Aligned_cols=166 Identities=23% Similarity=0.309 Sum_probs=107.9
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhC-CcEEEEec-------
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-ANFINISM------- 988 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg-~~fi~v~~------- 988 (1222)
..|.-++|++..+..|.-... ...-.|+||.|+.|+|||+++++|+.-+. ...+. .|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~ 78 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPD 78 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCC
Confidence 456788999999888754322 11225799999999999999999998872 11111 11
Q ss_pred -c------------------------ccccccccchHH----------HHHH--------HHHHHHhcCCcEEEEccchh
Q 000925 989 -S------------------------SITSKWFGEGEK----------YVKA--------VFSLASKIAPSVVFVDEVDS 1025 (1222)
Q Consensus 989 -s------------------------~L~s~~~G~se~----------~I~~--------lF~~A~k~~PsILfIDEID~ 1025 (1222)
+ .+...-.+.++. .++. ++..|. .+||||||+..
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An---RGIlYvDEvnl 155 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN---RGILYVDEVNL 155 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc---CCEEEEecccc
Confidence 0 011111122222 1111 222222 27999999988
Q ss_pred hhcCCCCCchHHHHHHHHHhH--hhhccCCcccCCCcEEEEEecCCC-CCCcHHHHhcccccccCCCC-CHHHHHHHHHH
Q 000925 1026 MLGRRENPGEHEAMRKMKNEF--MVNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLP-DAPNREKIIRV 1101 (1222)
Q Consensus 1026 L~~~r~~~~~~e~l~~il~~L--l~~ldgl~~k~~~~VlVIaTTN~p-~~Ld~aLlrRF~~~I~I~lP-d~eeR~eILk~ 1101 (1222)
| ...-+..+..++.+- ..+.+|+......++++|+|+|+- ..|-+.|+.||...+.+..| +.++|.+|+++
T Consensus 156 L-----~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r 230 (423)
T COG1239 156 L-----DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRR 230 (423)
T ss_pred c-----cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHH
Confidence 7 222333444444442 345567776677899999999986 57889999999988888776 58899999988
Q ss_pred HHhh
Q 000925 1102 ILAK 1105 (1222)
Q Consensus 1102 lL~k 1105 (1222)
-+.-
T Consensus 231 ~~~f 234 (423)
T COG1239 231 RLAF 234 (423)
T ss_pred HHHh
Confidence 7654
No 211
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.6e-08 Score=113.95 Aligned_cols=73 Identities=33% Similarity=0.587 Sum_probs=62.9
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc-ccccch-HHHHHHHHHHH----HhcCCcEEEEccchhhhc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLG 1028 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s-~~~G~s-e~~I~~lF~~A----~k~~PsILfIDEID~L~~ 1028 (1222)
.+|||.||+|+|||.||+.||+-+++||..++|..|.. .|+|+. |..|..++..| .+.+.+|+||||+|.+..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 47999999999999999999999999999999999875 577765 56777777776 345679999999999973
No 212
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.83 E-value=1.5e-07 Score=106.96 Aligned_cols=107 Identities=22% Similarity=0.319 Sum_probs=67.2
Q ss_pred CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCC------------CCCCcHHHHhcc
Q 000925 1014 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRL 1081 (1222)
Q Consensus 1014 ~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~------------p~~Ld~aLlrRF 1081 (1222)
-|+||||||+|.| +-....++++.+ .. +-.++ ||.+||+ |+-++..++.|.
T Consensus 291 VpGVLFIDEvHmL-----DIE~FsFlnrAl-------Es----e~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl 353 (450)
T COG1224 291 VPGVLFIDEVHML-----DIECFSFLNRAL-------ES----ELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRL 353 (450)
T ss_pred ecceEEEechhhh-----hHHHHHHHHHHh-------hc----ccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhhe
Confidence 3789999999987 111111222221 11 11344 4555553 788999999998
Q ss_pred cccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000925 1082 PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1138 (1222)
Q Consensus 1082 ~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~Aa~ 1138 (1222)
.+|...+.+.++-.+|++...+.+.+. ++..++.|+..-..-|-+--.+|+.-|..
T Consensus 354 -lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~i 410 (450)
T COG1224 354 -LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASI 410 (450)
T ss_pred -eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHH
Confidence 577788889999999999988876654 45556777766554444444444443333
No 213
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.83 E-value=1.3e-07 Score=105.46 Aligned_cols=191 Identities=14% Similarity=0.166 Sum_probs=114.9
Q ss_pred cceEECCCCChHHHHHHHHHHHhC-CcEEEEe--ccc-----cc---cccccc-----h-HHHHHHHH----HHHHhcCC
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAG-ANFINIS--MSS-----IT---SKWFGE-----G-EKYVKAVF----SLASKIAP 1015 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg-~~fi~v~--~s~-----L~---s~~~G~-----s-e~~I~~lF----~~A~k~~P 1015 (1222)
-++|+||+|+|||++++.++..+. ..++.+. ... +. ...+|. . ......+. .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 489999999999999999999875 2222211 111 00 001111 0 11112221 22334566
Q ss_pred cEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCC--CCCC----cHHHHhcccccccCCC
Q 000925 1016 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDL----DEAVVRRLPRRLMVNL 1089 (1222)
Q Consensus 1016 sILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~--p~~L----d~aLlrRF~~~I~I~l 1089 (1222)
.||+|||++.+- ... ...+..+... .......+.|+.+... ...+ ...+.+|+...+.++.
T Consensus 125 ~vliiDe~~~l~--------~~~-~~~l~~l~~~----~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 125 ALLVVDEAQNLT--------PEL-LEELRMLSNF----QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred eEEEEECcccCC--------HHH-HHHHHHHhCc----ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCC
Confidence 899999999872 111 1122222211 1111233334444322 1111 2346668877889999
Q ss_pred CCHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCC
Q 000925 1090 PDAPNREKIIRVILAKEE-----LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPP 1164 (1222)
Q Consensus 1090 Pd~eeR~eILk~lL~k~~-----l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airrii~~~~~e~~~~~~~~~~~~~ 1164 (1222)
.+.++..+++...+.... ..++..++.|+..+.|+.. .|..+|..|...+..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~--------------------- 249 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLE--------------------- 249 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHc---------------------
Confidence 999999999998887532 2345668889999999854 5999999888766553
Q ss_pred CCCccccccccHHHHHHHHHHhc
Q 000925 1165 LYSSVDVRPLKMDDFKYAHEQVC 1187 (1222)
Q Consensus 1165 ~~~~~~~r~Lt~eDF~~Alekv~ 1187 (1222)
....|+.+++..++..++
T Consensus 250 -----~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 250 -----EKREIGGEEVREVIAEID 267 (269)
T ss_pred -----CCCCCCHHHHHHHHHHhh
Confidence 124599999999988765
No 214
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.82 E-value=1.9e-09 Score=116.22 Aligned_cols=46 Identities=43% Similarity=0.666 Sum_probs=36.3
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 979 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el 979 (1222)
.|.+|.|++.+|..|.-... + .+++||+||||||||++|+++...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G-----~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G-----GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C-----C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C-----CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999977654 1 2689999999999999999998665
No 215
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.82 E-value=6.7e-08 Score=120.26 Aligned_cols=50 Identities=32% Similarity=0.455 Sum_probs=41.9
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 982 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~ 982 (1222)
.-|+++.|+++++..+...+.. ..+++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4577899999999988887752 1489999999999999999999988543
No 216
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.82 E-value=3.4e-08 Score=117.31 Aligned_cols=142 Identities=23% Similarity=0.289 Sum_probs=84.6
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC--c-----EEEEecc---
Q 000925 920 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--N-----FINISMS--- 989 (1222)
Q Consensus 920 ddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~--~-----fi~v~~s--- 989 (1222)
+++.+.+...+.+...+. ..++++|+||||||||++|+.+|..+.. . ++.+...
T Consensus 175 ~d~~i~e~~le~l~~~L~----------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 175 NDLFIPETTIETILKRLT----------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hcccCCHHHHHHHHHHHh----------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 445555666666655443 1258999999999999999999998842 1 2223221
Q ss_pred -cccccc----ccch--HHHHHHHHHHHHhc--CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccC--------
Q 000925 990 -SITSKW----FGEG--EKYVKAVFSLASKI--APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG-------- 1052 (1222)
Q Consensus 990 -~L~s~~----~G~s--e~~I~~lF~~A~k~--~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldg-------- 1052 (1222)
++...+ .|.. ...+..++..|... .|.|||||||++-- ..+++.+++..++.
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan-----------i~kiFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN-----------LSKVFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC-----------HHHhhhhhhhhccccccccccc
Confidence 222111 1100 11234455666553 47999999998641 12233333332221
Q ss_pred C----------cccCCCcEEEEEecCCCC----CCcHHHHhcccccccCCC
Q 000925 1053 L----------RTKDKERVLVLAATNRPF----DLDEAVVRRLPRRLMVNL 1089 (1222)
Q Consensus 1053 l----------~~k~~~~VlVIaTTN~p~----~Ld~aLlrRF~~~I~I~l 1089 (1222)
+ .-..+.++.||||+|..+ .+|.+++|||. .+.+.+
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhh-eEEecC
Confidence 0 011347899999999876 89999999994 455553
No 217
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.5e-08 Score=114.23 Aligned_cols=85 Identities=22% Similarity=0.431 Sum_probs=59.7
Q ss_pred CcEEEEccchhhhcCCCCCchHHHHH-HHHHhHhhhccCCcc------cCCCcEEEEEec----CCCCCCcHHHHhcccc
Q 000925 1015 PSVVFVDEVDSMLGRRENPGEHEAMR-KMKNEFMVNWDGLRT------KDKERVLVLAAT----NRPFDLDEAVVRRLPR 1083 (1222)
Q Consensus 1015 PsILfIDEID~L~~~r~~~~~~e~l~-~il~~Ll~~ldgl~~------k~~~~VlVIaTT----N~p~~Ld~aLlrRF~~ 1083 (1222)
-+||||||||.++.+....+. ...+ -+...++-.+.|-.. -..+++++||+. ..|.+|-|.+.-||+.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 469999999999866542221 2222 233445555554321 124789999987 5789999999999999
Q ss_pred cccCCCCCHHHHHHHHH
Q 000925 1084 RLMVNLPDAPNREKIIR 1100 (1222)
Q Consensus 1084 ~I~I~lPd~eeR~eILk 1100 (1222)
++++...+.++-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999888777663
No 218
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.80 E-value=2.8e-09 Score=106.76 Aligned_cols=118 Identities=30% Similarity=0.411 Sum_probs=69.1
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEEecc-cccc-ccccc----hHHHHHHHHHHHH-hcCCcEEEEccchhhhcC
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SITS-KWFGE----GEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGR 1029 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s-~L~s-~~~G~----se~~I~~lF~~A~-k~~PsILfIDEID~L~~~ 1029 (1222)
++||+|+||+|||++|+++|+.++..|.+|.+. +++- +..|. .+. ..|...+ -.-..|+++|||.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNra--- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRA--- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccC---
Confidence 589999999999999999999999999988774 3221 11111 000 0000000 000259999999865
Q ss_pred CCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC-----CCcHHHHhccc
Q 000925 1030 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF-----DLDEAVVRRLP 1082 (1222)
Q Consensus 1030 r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~-----~Ld~aLlrRF~ 1082 (1222)
.+..|.++.+++.+-...++|....-..+++||||.|+.+ .|+++++.||-
T Consensus 75 --ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 75 --PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp ---HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred --CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 5556777777777777777776655568899999999865 78899999983
No 219
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.79 E-value=1.6e-07 Score=112.55 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=90.8
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC--cEEEEecc-cccccccc
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMS-SITSKWFG 997 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~--~fi~v~~s-~L~s~~~G 997 (1222)
.|.|.+++.+.+...+. ...++||+||||||||+||++|+..++. +|..+.+. ......+|
T Consensus 21 ~i~gre~vI~lll~aal----------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL----------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hccCcHHHHHHHHHHHc----------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 36777777777766543 1257999999999999999999998742 44444332 11123333
Q ss_pred ch-HHHH--HHHHHHHHhc---CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC
Q 000925 998 EG-EKYV--KAVFSLASKI---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 998 ~s-e~~I--~~lF~~A~k~---~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
.. -... .+-|...... ...+||+|||.++ ++..+..+-.++++-.....+-..+-+.++++++| |...
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT-N~LP 158 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS-NELP 158 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccC-----CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC-CCCc
Confidence 21 0000 1222211111 1249999999865 43444444444444333333322222334455544 6432
Q ss_pred ---CCcHHHHhcccccccCCCCC-HHHHHHHHHHH
Q 000925 1072 ---DLDEAVVRRLPRRLMVNLPD-APNREKIIRVI 1102 (1222)
Q Consensus 1072 ---~Ld~aLlrRF~~~I~I~lPd-~eeR~eILk~l 1102 (1222)
...+++..||...+.+++|+ .++..+++...
T Consensus 159 E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 159 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 24468999998788888887 45556677653
No 220
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.79 E-value=5.9e-09 Score=109.75 Aligned_cols=128 Identities=20% Similarity=0.333 Sum_probs=76.7
Q ss_pred ccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----
Q 000925 922 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---- 994 (1222)
Q Consensus 922 I~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~---- 994 (1222)
|+|....++.+.+.+.... . .+..|||+|++||||+++|++|.+.. +.||+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~a-----------~-~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-----------S-SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-----------T-STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh-----------C-CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhh
Confidence 3455566666666554211 1 22579999999999999999998865 579999999875332
Q ss_pred -cccchH-------HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEe
Q 000925 995 -WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1066 (1222)
Q Consensus 995 -~~G~se-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaT 1066 (1222)
.||... ..-..+|+.|.. ++||||||+.| +...|..+.+++++-....-+-......++.||++
T Consensus 69 ~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDL-----PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred hhhccccccccccccccCCceeeccc---eEEeecchhhh-----HHHHHHHHHHHHhhchhccccccccccccceEEee
Confidence 333211 112367777766 99999999998 33444444444443222222222222358999999
Q ss_pred cCC
Q 000925 1067 TNR 1069 (1222)
Q Consensus 1067 TN~ 1069 (1222)
|+.
T Consensus 141 t~~ 143 (168)
T PF00158_consen 141 TSK 143 (168)
T ss_dssp ESS
T ss_pred cCc
Confidence 985
No 221
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.78 E-value=3.5e-08 Score=112.51 Aligned_cols=147 Identities=20% Similarity=0.287 Sum_probs=96.8
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhC--------------------
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 980 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg-------------------- 980 (1222)
++.+.+.....+...+.. .. +-++.+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~---------~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE---------SG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh---------cC---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 455666666666665541 11 1223599999999999999999999986
Q ss_pred ----CcEEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccC
Q 000925 981 ----ANFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1052 (1222)
Q Consensus 981 ----~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldg 1052 (1222)
..|+.++.++..... -....++.+-...... ..-|++|||+|.|.. ...+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~------------~A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE------------DAANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH------------HHHHHHHHHhcc
Confidence 467777766643321 1233455544444333 347999999999831 233444444433
Q ss_pred CcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHH
Q 000925 1053 LRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKI 1098 (1222)
Q Consensus 1053 l~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eI 1098 (1222)
...+..+|.+||.+..+-+.+++|+ ..+.|..|+...+...
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHH
Confidence 3467899999999999999999998 5677777554444333
No 222
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.78 E-value=1.6e-08 Score=106.88 Aligned_cols=114 Identities=26% Similarity=0.350 Sum_probs=72.6
Q ss_pred CCccceEECCCCChHHHHHHHHHHHhCC----cEEEEeccccccccccchHHHHHHHHHHH----HhcCCcEEEEccchh
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDS 1025 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~elg~----~fi~v~~s~L~s~~~G~se~~I~~lF~~A----~k~~PsILfIDEID~ 1025 (1222)
|...+||.||+|+|||.||+++|..+.. +++.++|+.+... +..+..+..++..+ .....+||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4456999999999999999999999996 9999999987651 11111222222211 111225999999999
Q ss_pred hhcCCCCCchHHHHHHHHHhHhhhccCCccc-------CCCcEEEEEecCCC
Q 000925 1026 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNRP 1070 (1222)
Q Consensus 1026 L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k-------~~~~VlVIaTTN~p 1070 (1222)
..+. ........-..+.+.|+..+++..-. .-.+++||+|+|--
T Consensus 80 a~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 8654 22233333345666666666543211 22579999999853
No 223
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=7.8e-08 Score=111.43 Aligned_cols=151 Identities=18% Similarity=0.244 Sum_probs=101.0
Q ss_pred CCccceEECCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccchHHHHHHHHHH
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 1009 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~elg~~------------------------fi~v~~s~L~s~~~G~se~~I~~lF~~ 1009 (1222)
.++.+||+||+|+||+++|+++|+.+.+. ++.+....- +. .-.-..++++...
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHH
Confidence 45679999999999999999999998542 222211100 00 0123456666655
Q ss_pred HHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccc
Q 000925 1010 ASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRL 1085 (1222)
Q Consensus 1010 A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I 1085 (1222)
+.. ....|++||++|.|- ....+.|+..++. ++.++++|.+|+.++.+.+++++|+ ..+
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~SRc-~~~ 160 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKSRC-QQQ 160 (328)
T ss_pred HhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHhhc-eee
Confidence 543 234699999999982 2344666666655 3367888999999999999999999 568
Q ss_pred cCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHH
Q 000925 1086 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 1127 (1222)
Q Consensus 1086 ~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~ 1127 (1222)
.|..|+.++-.+.+..... ...+.+...++....|-.+.
T Consensus 161 ~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~~ 199 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPLR 199 (328)
T ss_pred eCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHHH
Confidence 9999999888777765431 12233345566666665443
No 224
>PRK04132 replication factor C small subunit; Provisional
Probab=98.77 E-value=5.9e-08 Score=123.23 Aligned_cols=157 Identities=18% Similarity=0.211 Sum_probs=117.3
Q ss_pred CCCccceEEC--CCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHHhcC------CcEEE
Q 000925 953 KPCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA------PSVVF 1019 (1222)
Q Consensus 953 ~Pp~gILL~G--PpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~------PsILf 1019 (1222)
-|.-+-++.| |++.|||++|++||+++ +.+++.+|+++..+ -..++.+...+.... ..|+|
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 3544567889 99999999999999998 56899999987432 235666665543332 25999
Q ss_pred EccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHH
Q 000925 1020 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKII 1099 (1222)
Q Consensus 1020 IDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eIL 1099 (1222)
|||+|.| +...+ +.|+..++. ...++.+|++||.++.+.+++++|+ ..+.|..|+.++-...+
T Consensus 636 IDEaD~L-----t~~AQ-------nALLk~lEe----p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 636 LDEADAL-----TQDAQ-------QALRRTMEM----FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred EECcccC-----CHHHH-------HHHHHHhhC----CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHH
Confidence 9999998 22222 334444433 2367889999999999999999998 68999999999999999
Q ss_pred HHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHH
Q 000925 1100 RVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1132 (1222)
Q Consensus 1100 k~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L 1132 (1222)
+.++.++++. ++..+..|+..++|-....|..|
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9888876654 56678899999998766655444
No 225
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=1.4e-07 Score=109.40 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=101.2
Q ss_pred CcccccC-cHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcE-------------
Q 000925 918 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------- 983 (1222)
Q Consensus 918 tfddI~G-le~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f------------- 983 (1222)
.|+.|.| ++.+++.|...+.. .+.++.+||+||+|+||+++|+++|+.+-+.-
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4677777 88899988887752 23446789999999999999999999874320
Q ss_pred ---EEEeccccccccc-c--chHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCC
Q 000925 984 ---INISMSSITSKWF-G--EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1053 (1222)
Q Consensus 984 ---i~v~~s~L~s~~~-G--~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl 1053 (1222)
..-+.+++.--.. | -.-..++.+...+.. ....|++|||+|.+- ....+.|+..++.
T Consensus 70 ~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK~LEE- 136 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLKFLEE- 136 (329)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHHHhcC-
Confidence 0000011100000 1 112345555444432 223699999999882 2344566666655
Q ss_pred cccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHH
Q 000925 1054 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIR 1100 (1222)
Q Consensus 1054 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk 1100 (1222)
++..+++|.+|+.+..+.+++++|+ ..+.+..|+.++-..+++
T Consensus 137 ---Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 137 ---PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred ---CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHH
Confidence 3356777888888889999999999 688999999888766664
No 226
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.74 E-value=1.6e-07 Score=114.35 Aligned_cols=152 Identities=25% Similarity=0.315 Sum_probs=90.4
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhC----------------
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------------- 980 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg---------------- 980 (1222)
..|+++.|+..+++.+.-.+. ...+++|.||||||||+||+.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 478899999888776654332 225799999999999999999986431
Q ss_pred ------------CcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhh
Q 000925 981 ------------ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1048 (1222)
Q Consensus 981 ------------~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~ 1048 (1222)
.||....++......+|.+...-.+.+..|.. ++|||||++.+ +...++.+...+.....
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~-----~~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF-----KRSVLDALREPIEDGSI 324 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC-----CHHHHHHHHHHHHcCcE
Confidence 22332222221111222221112234455544 89999999987 32333444443332221
Q ss_pred hc--cCCcccCCCcEEEEEecCCC-----C------------------CCcHHHHhcccccccCCCCCH
Q 000925 1049 NW--DGLRTKDKERVLVLAATNRP-----F------------------DLDEAVVRRLPRRLMVNLPDA 1092 (1222)
Q Consensus 1049 ~l--dgl~~k~~~~VlVIaTTN~p-----~------------------~Ld~aLlrRF~~~I~I~lPd~ 1092 (1222)
.+ .+.......++.+|+++|+. . .+...++.||+..+.++.++.
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~ 393 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPP 393 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCH
Confidence 11 11111223679999999863 1 477889999998777776543
No 227
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.73 E-value=3e-08 Score=118.90 Aligned_cols=201 Identities=18% Similarity=0.230 Sum_probs=117.0
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccc--
Q 000925 920 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-- 994 (1222)
Q Consensus 920 ddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~-- 994 (1222)
.++.|.....+.+.+.+.. + ......++|+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 139 ~~lig~s~~~~~l~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEK-------I-----APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cceeecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 3455555555556554431 0 1122469999999999999999998776 578999999876322
Q ss_pred ---cccchH-------HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEE
Q 000925 995 ---WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1064 (1222)
Q Consensus 995 ---~~G~se-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVI 1064 (1222)
.||... ....+.|.. ...++||||||+.| +...+..+.+++++-.....+.......++.+|
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii 278 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDL-----PLNLQAKLLRFLQERVIERLGGREEIPVDVRIV 278 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhC-----CHHHHHHHHHHHhhCeEEeCCCCceeeeceEEE
Confidence 122110 001112222 33589999999998 333344444444332211112111123468899
Q ss_pred EecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhccc--------CCcccHHHHHHHcCCCc
Q 000925 1065 AATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEEL--------ASDVDLEGIANMADGYS 1125 (1222)
Q Consensus 1065 aTTN~p-------~~Ld~aLlrRF~~~I~I~lPd~eeR~e----ILk~lL~k~~l--------~sdidl~~LA~~t~GyS 1125 (1222)
+||+.. ..+.+.+..|+ ..+.|.+|...+|.+ ++++++.+... .++..+..|....=..+
T Consensus 279 ~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 357 (445)
T TIGR02915 279 CATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGN 357 (445)
T ss_pred EecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCCh
Confidence 998764 34556677777 467888999888876 45555544211 12222334443332345
Q ss_pred HHHHHHHHHHHHhhhh
Q 000925 1126 GSDLKNLCVTAAHCPI 1141 (1222)
Q Consensus 1126 g~DL~~L~~~Aa~~ai 1141 (1222)
.++|+++++.|+..+-
T Consensus 358 vreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 358 VRELENKVKRAVIMAE 373 (445)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 6888888888876443
No 228
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.71 E-value=2.1e-07 Score=107.46 Aligned_cols=93 Identities=20% Similarity=0.355 Sum_probs=51.7
Q ss_pred CcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecC------------CCCCCcHHHHhccc
Q 000925 1015 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN------------RPFDLDEAVVRRLP 1082 (1222)
Q Consensus 1015 PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN------------~p~~Ld~aLlrRF~ 1082 (1222)
|+||||||+|.| + -+. ...++..+ .. +-.++ ||.+|| .|+-++..|+.|+
T Consensus 279 pGVLFIDEvHmL-----D---iEc-FsfLnral---Es----~~sPi-iIlATNRg~~~irGt~~~sphGiP~DlLDRl- 340 (398)
T PF06068_consen 279 PGVLFIDEVHML-----D---IEC-FSFLNRAL---ES----ELSPI-IILATNRGITKIRGTDIISPHGIPLDLLDRL- 340 (398)
T ss_dssp E-EEEEESGGGS-----B---HHH-HHHHHHHH---TS----TT--E-EEEEES-SEEE-BTTS-EEETT--HHHHTTE-
T ss_pred cceEEecchhhc-----c---HHH-HHHHHHHh---cC----CCCcE-EEEecCceeeeccCccCcCCCCCCcchHhhc-
Confidence 789999999988 2 111 12222222 11 11344 455555 3678889999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCc
Q 000925 1083 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1125 (1222)
Q Consensus 1083 ~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GyS 1125 (1222)
.+|...+++.++-.+|++..++.+.+. ++..++.|+......+
T Consensus 341 lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~S 384 (398)
T PF06068_consen 341 LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETS 384 (398)
T ss_dssp EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-
T ss_pred EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhcc
Confidence 688889999999999999999887654 3333555554443333
No 229
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.64 E-value=1e-06 Score=100.00 Aligned_cols=177 Identities=16% Similarity=0.219 Sum_probs=109.2
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---------CCcEEEEecccc------cc----c----c--ccchHHHHHHHHHHH
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSI------TS----K----W--FGEGEKYVKAVFSLA 1010 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---------g~~fi~v~~s~L------~s----~----~--~G~se~~I~~lF~~A 1010 (1222)
.++||+|++|+|||++++..+... .+|++.+.++.- .. . + -....+.-.++....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998765 257888876431 10 0 0 011223344456677
Q ss_pred HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCC--CCCCcHHHHhcccccccCC
Q 000925 1011 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDLDEAVVRRLPRRLMVN 1088 (1222)
Q Consensus 1011 ~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~--p~~Ld~aLlrRF~~~I~I~ 1088 (1222)
+..++-+|+||||+.++.... ...+.+++.+... ...-+-+++.+||-.- .-.-|+.+.+||. .+.++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~-----~~qr~~Ln~LK~L----~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSY-----RKQREFLNALKFL----GNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhcccH-----HHHHHHHHHHHHH----hhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCC
Confidence 788889999999999863322 1223344433332 2222245566665422 2345688999994 44444
Q ss_pred CCC-HHHHHHHHHHHHhhcccC------CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHH
Q 000925 1089 LPD-APNREKIIRVILAKEELA------SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1143 (1222)
Q Consensus 1089 lPd-~eeR~eILk~lL~k~~l~------sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airr 1143 (1222)
.-. -++-..++..+-....+. ...-...|-.+++|..| +|..|+..|+..|++.
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhc
Confidence 432 344556676665554433 22223556677777655 8999999999888875
No 230
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.62 E-value=2.1e-07 Score=112.40 Aligned_cols=202 Identities=20% Similarity=0.255 Sum_probs=117.5
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-
Q 000925 919 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 994 (1222)
Q Consensus 919 fddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~- 994 (1222)
+.++.|.....+.+.+.+.. . ......+||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~-------~-----~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGR-------L-----SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHH-------H-----hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 44667766666666655431 0 1122469999999999999999998876 579999999876332
Q ss_pred ----cccchHH-------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEE
Q 000925 995 ----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1063 (1222)
Q Consensus 995 ----~~G~se~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlV 1063 (1222)
.+|.... .....|.. ...+.|||||||.| +...+..+.+++++-.....+.......++.|
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ri 276 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDM-----PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI 276 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEeccccC-----CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEE
Confidence 1221100 00111222 23579999999988 22333333333322111111111111346789
Q ss_pred EEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhccc--------CCcccHHHHHHHcCCC
Q 000925 1064 LAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEEL--------ASDVDLEGIANMADGY 1124 (1222)
Q Consensus 1064 IaTTN~p-------~~Ld~aLlrRF~~~I~I~lPd~eeR~e----ILk~lL~k~~l--------~sdidl~~LA~~t~Gy 1124 (1222)
|+||+.. ..+.+.+..|| ..+.|.+|...+|.+ ++++++.+... .+...+..|....=..
T Consensus 277 i~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 355 (469)
T PRK10923 277 IAATHQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 (469)
T ss_pred EEeCCCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCC
Confidence 9998753 34667777788 357788888777755 66666654211 1222334444433334
Q ss_pred cHHHHHHHHHHHHhhhh
Q 000925 1125 SGSDLKNLCVTAAHCPI 1141 (1222)
Q Consensus 1125 Sg~DL~~L~~~Aa~~ai 1141 (1222)
+.++|+++++.|+..+-
T Consensus 356 Nv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 356 NVRQLENTCRWLTVMAA 372 (469)
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 66889999988876543
No 231
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=1e-06 Score=101.95 Aligned_cols=163 Identities=12% Similarity=0.142 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc-----------------------
Q 000925 926 ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------------------- 982 (1222)
Q Consensus 926 e~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~----------------------- 982 (1222)
....+.|...+.. .+-++.+||+||.|+||+++|+++|+.+-+.
T Consensus 8 ~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 8 QPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred HHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 4555666665542 2345789999999999999999999988431
Q ss_pred -EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccC
Q 000925 983 -FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1057 (1222)
Q Consensus 983 -fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~ 1057 (1222)
|+.+... .++. -.-..++.+...+... .-.|++||++|.|- ....|.|+..++. +
T Consensus 75 D~~~i~p~--~~~~--I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEE----P 134 (325)
T PRK06871 75 DFHILEPI--DNKD--IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEE----P 134 (325)
T ss_pred CEEEEccc--cCCC--CCHHHHHHHHHHHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcC----C
Confidence 1222110 0111 1234566655554432 33699999999982 2344666666655 4
Q ss_pred CCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcH
Q 000925 1058 KERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1058 ~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg 1126 (1222)
+.++++|.+|+.++.|.+++++|+ ..+.|..|+.++-.+.+..... ........++..+.|-.+
T Consensus 135 p~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 135 RPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPL 198 (325)
T ss_pred CCCeEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHH
Confidence 477899999999999999999999 5788999998887777765421 122233444555555443
No 232
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=9.4e-07 Score=102.79 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=99.7
Q ss_pred CCCccceEECCCCChHHHHHHHHHHHhCCcE----------------EEEecccccccccc-----chHHHHHHHHHHHH
Q 000925 953 KPCKGILLFGPPGTGKTMLAKAVATEAGANF----------------INISMSSITSKWFG-----EGEKYVKAVFSLAS 1011 (1222)
Q Consensus 953 ~Pp~gILL~GPpGTGKT~LArAIA~elg~~f----------------i~v~~s~L~s~~~G-----~se~~I~~lF~~A~ 1011 (1222)
+.++.+||+||+|+||+++|.++|+.+-+.- ..-+.+++.--... -.-..++.+...+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 3457899999999999999999999883310 00011121110000 12234555555443
Q ss_pred h----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccC
Q 000925 1012 K----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV 1087 (1222)
Q Consensus 1012 k----~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I 1087 (1222)
. ....|++||++|.|- ....|.|+..++. ++.++++|.+|+.++.|.+++++|+. .+.+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~ 164 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRCR-LHYL 164 (334)
T ss_pred hccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhccc-cccC
Confidence 2 334699999999982 2345666776665 44778999999999999999999995 6899
Q ss_pred CCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHH
Q 000925 1088 NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1128 (1222)
Q Consensus 1088 ~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~D 1128 (1222)
+.|+.++..+.+... ... +......++..+.|-.+..
T Consensus 165 ~~~~~~~~~~~L~~~---~~~-~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 165 APPPEQYALTWLSRE---VTM-SQDALLAALRLSAGAPGAA 201 (334)
T ss_pred CCCCHHHHHHHHHHc---cCC-CHHHHHHHHHHcCCCHHHH
Confidence 999888777766432 122 2233445666666654433
No 233
>PRK08116 hypothetical protein; Validated
Probab=98.56 E-value=3.2e-07 Score=103.59 Aligned_cols=161 Identities=17% Similarity=0.230 Sum_probs=86.2
Q ss_pred cCCCCCCCCCCCcccccCcHHH---HHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---C
Q 000925 907 ADVIPPSDIGVTFDDIGALENV---KDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G 980 (1222)
Q Consensus 907 ~~vIp~~e~~vtfddI~Gle~i---k~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g 980 (1222)
...+++.....+|+++..-... ....++++.. |... .....+++|+|++|||||+||.+||+++ +
T Consensus 72 ~s~i~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~-------~~~~--~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~ 142 (268)
T PRK08116 72 NSLLDEKFRNSTFENFLFDKGSEKAYKIARKYVKK-------FEEM--KKENVGLLLWGSVGTGKTYLAACIANELIEKG 142 (268)
T ss_pred hcCCCHHHHhcchhcccCChHHHHHHHHHHHHHHH-------HHhh--ccCCceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3445544445678876533332 2333333321 1111 1123579999999999999999999987 7
Q ss_pred CcEEEEecccccccccc----chHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCccc
Q 000925 981 ANFINISMSSITSKWFG----EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1056 (1222)
Q Consensus 981 ~~fi~v~~s~L~s~~~G----~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k 1056 (1222)
.+++.++..+++..... ........++.... ...+|+|||+... ..+...++.+..+++....
T Consensus 143 ~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e---~~t~~~~~~l~~iin~r~~-------- 209 (268)
T PRK08116 143 VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE---RDTEWAREKVYNIIDSRYR-------- 209 (268)
T ss_pred CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC---CCCHHHHHHHHHHHHHHHH--------
Confidence 88888888776543211 11111222332222 3469999999642 1121223333333333221
Q ss_pred CCCcEEEEEecCCC-CC----CcHHHHhcc---cccccCCCCC
Q 000925 1057 DKERVLVLAATNRP-FD----LDEAVVRRL---PRRLMVNLPD 1091 (1222)
Q Consensus 1057 ~~~~VlVIaTTN~p-~~----Ld~aLlrRF---~~~I~I~lPd 1091 (1222)
....+|.|||.+ .. ++..+.+|+ ...+.+.-|+
T Consensus 210 --~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 210 --KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS 250 (268)
T ss_pred --CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC
Confidence 223466677754 33 456777774 2234455555
No 234
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.54 E-value=1.9e-06 Score=95.59 Aligned_cols=183 Identities=20% Similarity=0.298 Sum_probs=127.6
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh-C--CcEEEEec-----
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G--ANFINISM----- 988 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el-g--~~fi~v~~----- 988 (1222)
.+++.+.+.++....|..+.. .....++|+|||+|+||-+.+.++.+++ | .+=..+..
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~--------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS--------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc--------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 456677788888888777543 1122589999999999999999999887 3 21111111
Q ss_pred --------cccccc--------cccch-HHHHHHHHHHHHhcCC---------cEEEEccchhhhcCCCCCchHHHHHHH
Q 000925 989 --------SSITSK--------WFGEG-EKYVKAVFSLASKIAP---------SVVFVDEVDSMLGRRENPGEHEAMRKM 1042 (1222)
Q Consensus 989 --------s~L~s~--------~~G~s-e~~I~~lF~~A~k~~P---------sILfIDEID~L~~~r~~~~~~e~l~~i 1042 (1222)
..+.+. -.|.. .-.++.+..+..+.+| .|++|-|+|.| ....|.++++.
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----T~dAQ~aLRRT 150 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----TRDAQHALRRT 150 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----hHHHHHHHHHH
Confidence 001111 12222 2245556655544433 49999999999 34567777777
Q ss_pred HHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc
Q 000925 1043 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1121 (1222)
Q Consensus 1043 l~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t 1121 (1222)
+.... ..+.+|..+|....+-+.+++|+ ..+.++.|+.++-..++...++++.+. +..-+..+|+..
T Consensus 151 MEkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 151 MEKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred HHHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 76554 56788888999999999999987 568999999999999999999998876 445577888888
Q ss_pred CCCcHHHHH
Q 000925 1122 DGYSGSDLK 1130 (1222)
Q Consensus 1122 ~GySg~DL~ 1130 (1222)
+|.-.+.|-
T Consensus 219 ~~nLRrAll 227 (351)
T KOG2035|consen 219 NRNLRRALL 227 (351)
T ss_pred cccHHHHHH
Confidence 776555543
No 235
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.54 E-value=4.8e-07 Score=108.77 Aligned_cols=176 Identities=22% Similarity=0.294 Sum_probs=102.4
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----cccchHH-------HHHHHHHHHHhcCCcEEEE
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEK-------YVKAVFSLASKIAPSVVFV 1020 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~-----~~G~se~-------~I~~lF~~A~k~~PsILfI 1020 (1222)
..+||+|++||||+++|++|.... +.+|+.++|..+... .||.... .....|..| ..++|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEE
Confidence 469999999999999999998765 579999999876332 2221100 001122222 3489999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000925 1021 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1093 (1222)
Q Consensus 1021 DEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~I~lPd~e 1093 (1222)
||||.| +...+..+..++..-.....+.......++.||+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 244 d~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLr 317 (457)
T PRK11361 244 DEIGEM-----PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL-NVIHLILPPLR 317 (457)
T ss_pred echhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999998 222233332332221111111111123468999999754 24555666676 35788889988
Q ss_pred HHHH----HHHHHHhhccc----C-Cccc---HHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 000925 1094 NREK----IIRVILAKEEL----A-SDVD---LEGIANMADGYSGSDLKNLCVTAAHCP 1140 (1222)
Q Consensus 1094 eR~e----ILk~lL~k~~l----~-sdid---l~~LA~~t~GySg~DL~~L~~~Aa~~a 1140 (1222)
+|.+ ++..++.+... . ..+. +..|....=..+.++|+++++.|+..+
T Consensus 318 eR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 318 DRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred hchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 8865 44455544211 1 1223 333333332346688888888887644
No 236
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.53 E-value=3.6e-07 Score=95.66 Aligned_cols=133 Identities=21% Similarity=0.307 Sum_probs=85.0
Q ss_pred CcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC----------------------
Q 000925 924 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------- 981 (1222)
Q Consensus 924 Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~---------------------- 981 (1222)
|++++.+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-+
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 567788888887752 234467999999999999999999988722
Q ss_pred -cEEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCccc
Q 000925 982 -NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1056 (1222)
Q Consensus 982 -~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k 1056 (1222)
.++.+....-.. .-..+.++.+...+... ..-|++|||+|.|. ....+.|+..|+.
T Consensus 68 ~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEe---- 128 (162)
T PF13177_consen 68 PDFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEE---- 128 (162)
T ss_dssp TTEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHS----
T ss_pred cceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcC----
Confidence 233333221100 01234566666555433 34699999999982 2344555555554
Q ss_pred CCCcEEEEEecCCCCCCcHHHHhcccccccCCC
Q 000925 1057 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1089 (1222)
Q Consensus 1057 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~l 1089 (1222)
+..++++|.+|+.++.+.+++++|+ ..+.+..
T Consensus 129 pp~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 129 PPENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp TTTTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred CCCCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 3467999999999999999999998 4555543
No 237
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=1e-06 Score=109.68 Aligned_cols=195 Identities=14% Similarity=0.212 Sum_probs=113.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEE-Eec---ccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISM---SSI 991 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~-v~~---s~L 991 (1222)
..+++++++.++..+.++.++..... . ..+.+.++|+||+|+|||++++.+|.+++..++. ++. ...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~--------~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVL--------E-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhccc--------c-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 45789999999999998887753111 0 1233349999999999999999999999866544 111 100
Q ss_pred cc---------c---cccchHHHHHHHHHHHHh----------cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhh
Q 000925 992 TS---------K---WFGEGEKYVKAVFSLASK----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1049 (1222)
Q Consensus 992 ~s---------~---~~G~se~~I~~lF~~A~k----------~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ 1049 (1222)
.. . .+......++.++..|.. ....|||||||+.++.. . ......++.. .
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~----~~~lq~lLr~---~ 222 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D----TRALHEILRW---K 222 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h----HHHHHHHHHH---H
Confidence 00 0 011223345555555542 23569999999987522 1 1222233220 1
Q ss_pred ccCCcccCCCcEEEEEecCCCC----------C----CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccC----
Q 000925 1050 WDGLRTKDKERVLVLAATNRPF----------D----LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA---- 1109 (1222)
Q Consensus 1050 ldgl~~k~~~~VlVIaTTN~p~----------~----Ld~aLlr--RF~~~I~I~lPd~eeR~eILk~lL~k~~l~---- 1109 (1222)
... ....+ +|+++|..+. . |.+++++ |. .+|.|.+....+..+.|+.++..+...
T Consensus 223 ~~e---~~~~p-LI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~ 297 (637)
T TIGR00602 223 YVS---IGRCP-LVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEK 297 (637)
T ss_pred hhc---CCCce-EEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccc
Confidence 111 11122 3333331111 1 3367775 44 468899999999888888888764321
Q ss_pred ----CcccHHHHHHHcCCCcHHHHHHH
Q 000925 1110 ----SDVDLEGIANMADGYSGSDLKNL 1132 (1222)
Q Consensus 1110 ----sdidl~~LA~~t~GySg~DL~~L 1132 (1222)
....+..|+....|-....|..|
T Consensus 298 ~~~p~~~~l~~I~~~s~GDiRsAIn~L 324 (637)
T TIGR00602 298 IKVPKKTSVELLCQGCSGDIRSAINSL 324 (637)
T ss_pred cccCCHHHHHHHHHhCCChHHHHHHHH
Confidence 22356777777777655555544
No 238
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=2.2e-06 Score=99.07 Aligned_cols=170 Identities=19% Similarity=0.210 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcE-E---EE---------eccccc
Q 000925 926 ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-I---NI---------SMSSIT 992 (1222)
Q Consensus 926 e~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f-i---~v---------~~s~L~ 992 (1222)
..+.+.|...+.. .+-++.+||+||+|+||+++|.++|+.+-+.- . .+ +.+++.
T Consensus 10 ~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 10 QRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQ 76 (319)
T ss_pred HHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEE
Confidence 4566666665542 23446799999999999999999998873310 0 00 011111
Q ss_pred cc-----ccc------chHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccC
Q 000925 993 SK-----WFG------EGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1057 (1222)
Q Consensus 993 s~-----~~G------~se~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~ 1057 (1222)
-- ..| -.-+.|+++...+...+ -.|++||++|.|- ....|.|+..++. +
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----P 140 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEE----P 140 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhC----C
Confidence 00 001 11335666665554432 2599999999982 2344556666554 3
Q ss_pred CCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHH
Q 000925 1058 KERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK 1130 (1222)
Q Consensus 1058 ~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~ 1130 (1222)
..++++|.+|+.++.|.+++++|+ ..+.|..|+.++-...+.. ... +..+...++....|..+..+.
T Consensus 141 p~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~----~~~-~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 141 SPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLA----QGV-SERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred CCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHH----cCC-ChHHHHHHHHHcCCCHHHHHH
Confidence 467888888999999999999999 6788999998777666653 222 233344566676665554443
No 239
>PRK12377 putative replication protein; Provisional
Probab=98.47 E-value=6.4e-07 Score=100.05 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=65.8
Q ss_pred HhcCCCCCCCCCCCcccccCc-H---HHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh-
Q 000925 905 LLADVIPPSDIGVTFDDIGAL-E---NVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA- 979 (1222)
Q Consensus 905 ll~~vIp~~e~~vtfddI~Gl-e---~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el- 979 (1222)
+....|++.....+|+++... + .+...+..++.. |.. ...+++|+||||||||+||.+||+++
T Consensus 59 ~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 59 LNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred HHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344556776667789986532 2 233333443321 111 12579999999999999999999988
Q ss_pred --CCcEEEEeccccccccccch--HHHHHHHHHHHHhcCCcEEEEccchhh
Q 000925 980 --GANFINISMSSITSKWFGEG--EKYVKAVFSLASKIAPSVVFVDEVDSM 1026 (1222)
Q Consensus 980 --g~~fi~v~~s~L~s~~~G~s--e~~I~~lF~~A~k~~PsILfIDEID~L 1026 (1222)
+..++.++.+++....-... ......++... ....+|+|||++..
T Consensus 127 ~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 127 AKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 67788888777655321100 00111222222 34689999999654
No 240
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.47 E-value=1.4e-06 Score=101.33 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=47.4
Q ss_pred Ccc-cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 000925 918 TFD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 988 (1222)
Q Consensus 918 tfd-dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------~fi~v~~ 988 (1222)
-|+ ++.|+++.++++.+++..... +.....+.++|+||||+|||+||++|++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 356 799999999999887764221 11222345899999999999999999999855 6766654
No 241
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.47 E-value=3.7e-07 Score=115.73 Aligned_cols=175 Identities=19% Similarity=0.214 Sum_probs=99.7
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhh---cC----CCCCCCccceEECCCCChHHHHHHHHHHHh-------CCcEEEE
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINI 986 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~---k~----~l~~Pp~gILL~GPpGTGKT~LArAIA~el-------g~~fi~v 986 (1222)
.|.|++.+|..|.-.+.-.......+. .+ .-.+-..+|||+|+||||||.+|+++++.. |.++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 688999999888554432211100000 00 011223469999999999999999998865 2344544
Q ss_pred ecccccccccc--chHHH-HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhh--ccCCcccCCCcE
Q 000925 987 SMSSITSKWFG--EGEKY-VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRTKDKERV 1061 (1222)
Q Consensus 987 ~~s~L~s~~~G--~se~~-I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~--ldgl~~k~~~~V 1061 (1222)
.+..... +.+ .++.. -.+.+..|. .++++|||++.| +...+..+.+++.+-... -.|+...-+.++
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvlAd---gGtL~IDEidkm-----s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~ 601 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVLAN---GGVCCIDELDKC-----HNESRLSLYEVMEQQTVTIAKAGIVATLKAET 601 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEEcC---CCeEEecchhhC-----CHHHHHHHHHHHhCCEEEEecCCcceecCCCe
Confidence 4433211 000 00000 011222333 389999999988 323334444433322211 124333345789
Q ss_pred EEEEecCCC-------------CCCcHHHHhcccccc-cCCCCCHHHHHHHHHHHHh
Q 000925 1062 LVLAATNRP-------------FDLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILA 1104 (1222)
Q Consensus 1062 lVIaTTN~p-------------~~Ld~aLlrRF~~~I-~I~lPd~eeR~eILk~lL~ 1104 (1222)
.||||+|+. -.|++.+++||+.++ .++.|+.+.=..|.++++.
T Consensus 602 rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 602 AILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred EEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 999999974 257799999998654 4566776666666666553
No 242
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1.3e-06 Score=101.60 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=91.3
Q ss_pred CCCccceEECCCCChHHHHHHHHHHHhCCcE-------------------------EEEeccccc---------------
Q 000925 953 KPCKGILLFGPPGTGKTMLAKAVATEAGANF-------------------------INISMSSIT--------------- 992 (1222)
Q Consensus 953 ~Pp~gILL~GPpGTGKT~LArAIA~elg~~f-------------------------i~v~~s~L~--------------- 992 (1222)
+.++++||+||+|+||+++|+++|+.+.+.. +.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 3457899999999999999999999885422 111111000
Q ss_pred ---ccc-----ccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCc
Q 000925 993 ---SKW-----FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1060 (1222)
Q Consensus 993 ---s~~-----~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~ 1060 (1222)
+.. -.-.-..++.+...+... .-.|++||++|.|- ....|.|+..++. ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 000 001123455555544322 23599999999982 2345666777664 4477
Q ss_pred EEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHH
Q 000925 1061 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 1102 (1222)
Q Consensus 1061 VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~l 1102 (1222)
+++|.+|+.++.|.+++++|+ ..+.|.+|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 899999999999999999999 68999999998888877653
No 243
>PRK15115 response regulator GlrR; Provisional
Probab=98.46 E-value=1.6e-06 Score=104.14 Aligned_cols=176 Identities=20% Similarity=0.278 Sum_probs=102.6
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccccccc-----ccchHH-------HHHHHHHHHHhcCCcEEEE
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEK-------YVKAVFSLASKIAPSVVFV 1020 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~-----~G~se~-------~I~~lF~~A~k~~PsILfI 1020 (1222)
..++|+|++||||+++|++|.+.. +.+|+.++|..+.... ||.... ....+|.. ...++|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQA---AEGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEE---CCCCEEEE
Confidence 369999999999999999998875 5799999998763321 111100 00112222 23489999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000925 1021 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1093 (1222)
Q Consensus 1021 DEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~I~lPd~e 1093 (1222)
||||.| +...+..+.+++.+-....-+.......++.+|+||+.. ..+.+.+..|+ ..+.|.+|...
T Consensus 235 ~~i~~l-----~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr 308 (444)
T PRK15115 235 DEIGDM-----PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALA 308 (444)
T ss_pred EccccC-----CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChH
Confidence 999998 333334443333322111111111123478999998753 13334444455 35778889998
Q ss_pred HHHH----HHHHHHhhccc--------CCcccHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 000925 1094 NREK----IIRVILAKEEL--------ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1140 (1222)
Q Consensus 1094 eR~e----ILk~lL~k~~l--------~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~a 1140 (1222)
+|.+ ++++++.+... .++..+..|....=.-+.++|+++++.|+..+
T Consensus 309 ~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 309 ERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred hccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 8854 44566554211 12333444444442346688888888877643
No 244
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.45 E-value=1.4e-07 Score=92.92 Aligned_cols=55 Identities=29% Similarity=0.494 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhccCC-CCeEEEEcchhhhhccC--------hhhHHHHHHHHhcCCC---CEEEEEeccC
Q 000925 660 AINELFEVALNESKS-SPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLPS---NVVVIGSHTQ 717 (1222)
Q Consensus 660 ~~~~l~ev~~~esk~-~P~Ilfi~die~~l~~~--------~~~~~~l~~~L~~l~g---~vvvIgS~~~ 717 (1222)
.+..+|+-+.. . .|.||||||+|.+.... ......|...|++... +++||++.++
T Consensus 45 ~i~~~~~~~~~---~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 45 KIRDFFKKAKK---SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp HHHHHHHHHHH---TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred ccccccccccc---cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 45556666555 4 49999999999977765 6777888888888865 6999999995
No 245
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.45 E-value=2.8e-06 Score=103.77 Aligned_cols=228 Identities=20% Similarity=0.227 Sum_probs=139.0
Q ss_pred ccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh----------CCcEEEEecccc
Q 000925 922 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 991 (1222)
Q Consensus 922 I~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v~~s~L 991 (1222)
+...+....+|..++...+.. +. -...+.|.|-||||||.+++.+..++ .+.|+.+|+-.|
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~-----~~----~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISD-----QG----LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCC-----CC----CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 455667777777777643331 01 11258999999999999999998765 478899987654
Q ss_pred ccc----------cccchH------HHHHHHHHHH-HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCc
Q 000925 992 TSK----------WFGEGE------KYVKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1054 (1222)
Q Consensus 992 ~s~----------~~G~se------~~I~~lF~~A-~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~ 1054 (1222)
.+. +.|+.. ..+..-|... -+..++||+|||+|.|+.+.+ .++..|. ..+
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q---------dVlYn~f----dWp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ---------DVLYNIF----DWP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH---------HHHHHHh----cCC
Confidence 432 122211 1222233311 233568999999999975432 2333332 233
Q ss_pred ccCCCcEEEEEecCCCCCCcHHH----Hhccc-ccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHH--
Q 000925 1055 TKDKERVLVLAATNRPFDLDEAV----VRRLP-RRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS-- 1127 (1222)
Q Consensus 1055 ~k~~~~VlVIaTTN~p~~Ld~aL----lrRF~-~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~-- 1127 (1222)
...+.+++||+.+|..+.....+ -+|++ .++.|.+.+..+..+|+...+..........++.+|+.-...+|.
T Consensus 536 t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHH
Confidence 34568899999988755333222 23543 468899999999999999998876444444556666655545542
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 000925 1128 DLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1190 (1222)
Q Consensus 1128 DL~~L~~~Aa~~airrii~~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~ 1190 (1222)
.-..+|.+|+..+-.+.. . ....-...|++-|+..|+..+..+.
T Consensus 616 raldic~RA~Eia~~~~~-~------------------~k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 616 RALDICRRAAEIAEERNV-K------------------GKLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHHHHHhhhhcc-c------------------ccccccceeehHHHHHHHHHHhhhh
Confidence 233566666654433321 0 0111224588889999988875443
No 246
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.45 E-value=2.7e-06 Score=103.50 Aligned_cols=152 Identities=24% Similarity=0.309 Sum_probs=88.7
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhC----CcEEEEec-----
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISM----- 988 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg----~~fi~v~~----- 988 (1222)
.|.++.|...+++.+.-.+ ....+++|+||+|+|||+|++.|+..+. -..+.+..
T Consensus 189 d~~~v~Gq~~~~~al~laa----------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA----------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred CeEEEECcHHHHhhhheec----------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 6778888776666543211 1235799999999999999999987652 11111110
Q ss_pred -c-----ccc-------------cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhh
Q 000925 989 -S-----SIT-------------SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1049 (1222)
Q Consensus 989 -s-----~L~-------------s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ 1049 (1222)
. .+. ...+|.....-...+..|.. ++||||||+.+ +...++.+++.+.+-...
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----~~~~~~~L~~~LE~g~v~ 324 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----ERRTLDALREPIESGQIH 324 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----CHHHHHHHHHHHHcCcEE
Confidence 0 000 00122221122245566655 89999999876 222333343333322222
Q ss_pred ccC--CcccCCCcEEEEEecCCCC---------------------CCcHHHHhcccccccCCCCCHH
Q 000925 1050 WDG--LRTKDKERVLVLAATNRPF---------------------DLDEAVVRRLPRRLMVNLPDAP 1093 (1222)
Q Consensus 1050 ldg--l~~k~~~~VlVIaTTN~p~---------------------~Ld~aLlrRF~~~I~I~lPd~e 1093 (1222)
+.. .......++.+|+|+|+.. .+...++.||+..+.++.|+.+
T Consensus 325 I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 325 LSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 121 1112246799999999752 4777899999988888887643
No 247
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=4.3e-06 Score=96.58 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=97.3
Q ss_pred cHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc----------------------
Q 000925 925 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 982 (1222)
Q Consensus 925 le~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~---------------------- 982 (1222)
+....+.|...+.. .+.++.+||+||.|+||+.+|.++|+.+-+.
T Consensus 8 l~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 8 LVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 34566666665542 3345789999999999999999999987321
Q ss_pred -EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccC
Q 000925 983 -FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1057 (1222)
Q Consensus 983 -fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~ 1057 (1222)
|+.+.... .++.+ .-+.++.+-..+... .-.|++||++|.|- ....|.|+..++. +
T Consensus 75 D~~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----P 135 (319)
T PRK06090 75 DLHVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEE----P 135 (319)
T ss_pred CEEEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcC----C
Confidence 22222110 00111 223455555444332 24699999999982 2344666666665 4
Q ss_pred CCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHH
Q 000925 1058 KERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 1101 (1222)
Q Consensus 1058 ~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~ 1101 (1222)
+.++++|.+|+.++.|.+++++|+ ..+.|..|+.++..+.+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999999 5789999998877776653
No 248
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.42 E-value=6.8e-07 Score=107.72 Aligned_cols=201 Identities=21% Similarity=0.277 Sum_probs=111.5
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccc---
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 994 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~--- 994 (1222)
.+.|.......+.+.+.. + ......++|.|++||||+++|++|.... +.+|+.++|..+...
T Consensus 135 ~lig~s~~~~~v~~~i~~-~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGR-L-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ceeecCHHHHHHHHHHHH-H-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 466666666666554432 0 1112469999999999999999998775 579999999876332
Q ss_pred --cccchHHH-------HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEE
Q 000925 995 --WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1065 (1222)
Q Consensus 995 --~~G~se~~-------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIa 1065 (1222)
.+|..... ....|. ....+.||||||+.| +...+..+.+++.+-....-+-......++.||+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l-----~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~ 274 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDM-----PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVA 274 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhC-----CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEE
Confidence 12211000 001122 223589999999988 2222333322222211111011111124678888
Q ss_pred ecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhccc--------CCcccHHHHHHHcCCCcH
Q 000925 1066 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEEL--------ASDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1066 TTN~p-------~~Ld~aLlrRF~~~I~I~lPd~eeR~e----ILk~lL~k~~l--------~sdidl~~LA~~t~GySg 1126 (1222)
+|+.. ..+.+.+..|+. .+.+.+|...+|.+ ++++++.+... .++..+..|....=--+.
T Consensus 275 ~~~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv 353 (463)
T TIGR01818 275 ATHQNLEALVRQGKFREDLFHRLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNV 353 (463)
T ss_pred eCCCCHHHHHHcCCcHHHHHHHhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChH
Confidence 88753 245567777773 56777777666643 55555544211 122223333333212245
Q ss_pred HHHHHHHHHHHhhhhH
Q 000925 1127 SDLKNLCVTAAHCPIR 1142 (1222)
Q Consensus 1127 ~DL~~L~~~Aa~~air 1142 (1222)
++|+++++.|+..+..
T Consensus 354 reL~~~~~~~~~~~~~ 369 (463)
T TIGR01818 354 RQLENLCRWLTVMASG 369 (463)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 8899999888875543
No 249
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=98.41 E-value=4.2e-07 Score=107.73 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=70.9
Q ss_pred ceeeecceeEEcccCccceeecCCC--CCccceEEEEeecCCcceEEEEEecCcceEEEc--CeecCCCceEEeeCCCEE
Q 000925 146 HLSMTGAVFTVGHNRQCDLYLKDPS--ISKNLCRLRRIENGGPSGALLEITGGKGEVEVN--GNVHPKDSQVVLRGGDEL 221 (1222)
Q Consensus 146 ~~~i~~~~~t~G~~~~cd~~~~~~~--~s~~~c~l~~~~~~g~~~~~le~~~~~G~v~vN--g~~~~k~~~~~L~~gdev 221 (1222)
.+.+....++|||+..||+.+.|+. +|..||.|.+. +|. .+|+|.|+||| +|| |..+.++..+.|+.||+|
T Consensus 18 ~~~f~~~~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~--~g~--~~l~DlStNGT-~VN~sg~~l~~~~~~~L~~GD~I 92 (396)
T TIGR03354 18 QKTFGTNGGTIGRSEDCDWVLPDPERHVSGRHARIRYR--DGA--YLLTDLSTNGV-FLNGSGSPLGRGNPVRLEQGDRL 92 (396)
T ss_pred EEEECCCCEEEecCCCCCEEeCCCCCCcchhhcEEEEE--CCE--EEEEECCCCCe-EECCCCCCCCCCCceEcCCCCEE
Confidence 5667778899999999999999999 99999999975 443 78999988999 699 999999999999999999
Q ss_pred EEccCCCeeEE
Q 000925 222 VFSPSGKHSYI 232 (1222)
Q Consensus 222 ~f~~~~~~ayi 232 (1222)
.|+...-..++
T Consensus 93 ~iG~~~lrv~~ 103 (396)
T TIGR03354 93 RLGDYEIRVSL 103 (396)
T ss_pred EECCEEEEEEe
Confidence 99875444443
No 250
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=1.5e-05 Score=93.86 Aligned_cols=240 Identities=20% Similarity=0.231 Sum_probs=144.8
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh-----CCcEEEEeccccccc-
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK- 994 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~- 994 (1222)
.+.|.+..+..+++++..++.. ..+..+.+.|.||||||.+...+...+ ....++++|..|...
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~----------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL----------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc----------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 5788899999999998865542 223579999999999999998776555 335588888753211
Q ss_pred ---------c----ccc-hHHHHHHHHHHHH-hc-CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCC
Q 000925 995 ---------W----FGE-GEKYVKAVFSLAS-KI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1058 (1222)
Q Consensus 995 ---------~----~G~-se~~I~~lF~~A~-k~-~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~ 1058 (1222)
+ .+. .+......|+.-. +. .+-||++||+|.|+.+.. .++.+ +.+|..+ .+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~---------~vLy~-lFewp~l---p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ---------TVLYT-LFEWPKL---PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc---------ceeee-ehhcccC---Cc
Confidence 1 111 1122233333322 22 367999999999973321 12211 2344444 45
Q ss_pred CcEEEEEecCCCCCCcHHHHh---c---ccccccCCCCCHHHHHHHHHHHHhhcccCCc--ccHHHHHHHcCCCcHHHHH
Q 000925 1059 ERVLVLAATNRPFDLDEAVVR---R---LPRRLMVNLPDAPNREKIIRVILAKEELASD--VDLEGIANMADGYSGSDLK 1130 (1222)
Q Consensus 1059 ~~VlVIaTTN~p~~Ld~aLlr---R---F~~~I~I~lPd~eeR~eILk~lL~k~~l~sd--idl~~LA~~t~GySg~DL~ 1130 (1222)
.++++||.+|..+.-|..+-| | -+..+.|++++.++..+||+.-+........ ..++..|....|.+| ||+
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 789999999987765544444 2 3567899999999999999999988654433 346777888888777 554
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccc
Q 000925 1131 NLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1191 (1222)
Q Consensus 1131 ~L~~~Aa~~airrii~~~~~e~~~~~~~~~~~~~~~~~~~~r~Lt~eDF~~Alekv~pS~s 1191 (1222)
.+..- .|+.++..+.+..... ....++-...+...+|.++++..++.++--+-+
T Consensus 367 kaLdv-----~R~aiEI~E~e~r~~~--~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~ 420 (529)
T KOG2227|consen 367 KALDV-----CRRAIEIAEIEKRKIL--DDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPS 420 (529)
T ss_pred HHHHH-----HHHHHHHHHHHHhhcc--ccCCCCCCCcccccccchHHHHHHhhhhccChh
Confidence 43221 1222222221111110 111111111222267788999888888755443
No 251
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.39 E-value=1.5e-06 Score=96.87 Aligned_cols=107 Identities=22% Similarity=0.306 Sum_probs=66.3
Q ss_pred hcCCCCCCCCCCCcccccCc-HHH---HHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh--
Q 000925 906 LADVIPPSDIGVTFDDIGAL-ENV---KDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-- 979 (1222)
Q Consensus 906 l~~vIp~~e~~vtfddI~Gl-e~i---k~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el-- 979 (1222)
....|++.....+|+++... +.. ...+.+++.. |. ....+++|+|++|||||+|+.+||+++
T Consensus 58 ~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~~l~~ 125 (244)
T PRK07952 58 NRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICNELLL 125 (244)
T ss_pred HHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34556666667789986533 222 3333333321 11 112479999999999999999999998
Q ss_pred -CCcEEEEeccccccccccc---hHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000925 980 -GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSM 1026 (1222)
Q Consensus 980 -g~~fi~v~~s~L~s~~~G~---se~~I~~lF~~A~k~~PsILfIDEID~L 1026 (1222)
+..++.++.+++....-.. .......++.... ...+|+|||++..
T Consensus 126 ~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 126 RGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred cCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 7788888887766432211 1111223333332 4689999999865
No 252
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.5e-06 Score=100.14 Aligned_cols=140 Identities=16% Similarity=0.188 Sum_probs=91.5
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcchhhhhccC--hhhHHHHHHHHhcC-------CCCEEEEEeccCCCCccccCCCCCc
Q 000925 660 AINELFEVALNESKSSPLIVFVKDIEKSLTGN--NDAYGALKSKLENL-------PSNVVVIGSHTQLDSRKEKSHPGGL 730 (1222)
Q Consensus 660 ~~~~l~ev~~~esk~~P~Ilfi~die~~l~~~--~~~~~~l~~~L~~l-------~g~vvvIgS~~~~d~~k~k~~~~~~ 730 (1222)
.|..||.-... | ..-++||||+.|.+||.. +.+-...++.|+.| +..+|++-++|+
T Consensus 430 kiH~lFDWakk-S-~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNr------------- 494 (630)
T KOG0742|consen 430 KIHKLFDWAKK-S-RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNR------------- 494 (630)
T ss_pred HHHHHHHHHhh-c-ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCC-------------
Confidence 45556665543 1 367999999999999943 44445677778777 346777777774
Q ss_pred eeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhcchhhhccchhh
Q 000925 731 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNII 808 (1222)
Q Consensus 731 ~l~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il 808 (1222)
|-+|| -+++.+|-.+|++++|..|...+ +..-.-|+..|+..+.- -+
T Consensus 495 -----------------pgdlD-------------sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~-~~ 543 (630)
T KOG0742|consen 495 -----------------PGDLD-------------SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKP-GK 543 (630)
T ss_pred -----------------ccchh-------------HHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCC-ch
Confidence 44444 56788888999999999888766 33334455566655531 11
Q ss_pred HHHHH------hh-hCCCCcccchhhhccccCCCHHHHHHHHhh
Q 000925 809 SIRSV------LS-RNGLDCVDLESLCIKDQTLTTEGVEKIVGW 845 (1222)
Q Consensus 809 ~IhT~------l~-~~~l~~~dLe~La~~tkg~sgadI~~Lv~~ 845 (1222)
.-|-+ +. +..+.+.-+.+.|.+|.||+|-+|..|+-.
T Consensus 544 ~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 544 WSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred hhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 11111 11 111234567789999999999999998743
No 253
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.35 E-value=2.6e-06 Score=106.32 Aligned_cols=48 Identities=31% Similarity=0.475 Sum_probs=40.5
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhC
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 980 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg 980 (1222)
..|+++.|++++++.|...+.. .+++||+||||||||++|+++++.+.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 5789999999999988876652 13799999999999999999988763
No 254
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.32 E-value=2.7e-06 Score=96.81 Aligned_cols=202 Identities=23% Similarity=0.314 Sum_probs=120.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 992 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~ 992 (1222)
...|+.|++....++.+.+.... ++ .+. ..+||+|.+||||-.||++.-... ..||+.+||+.+-
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k-------~A--mlD---APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQK-------LA--MLD---APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHH-------hh--ccC---CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 34677777777666665543321 11 112 249999999999999999986555 7899999997653
Q ss_pred -----cccccchH--HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEE
Q 000925 993 -----SKWFGEGE--KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1065 (1222)
Q Consensus 993 -----s~~~G~se--~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIa 1065 (1222)
+..||... .--..+|+.|.. +.+|+|||..| ++.-|..+-++++.-....-|-.......|.||+
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm-----Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIc 339 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM-----SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 339 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc-----CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEe
Confidence 23444332 345678888877 89999999887 3444444444444332222222222346799999
Q ss_pred ecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhh----cccC-CcccHHHHHHHcC-CC--cH
Q 000925 1066 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EELA-SDVDLEGIANMAD-GY--SG 1126 (1222)
Q Consensus 1066 TTN~p-------~~Ld~aLlrRF~~~I~I~lPd~eeR~e----ILk~lL~k----~~l~-sdidl~~LA~~t~-Gy--Sg 1126 (1222)
||..+ ..+-+.+.-|+ .++.+.+|...+|.. +.+.|+++ .... +..+.+.+...+. +| +.
T Consensus 340 atq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNV 418 (511)
T COG3283 340 ATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNV 418 (511)
T ss_pred cccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccH
Confidence 99643 23334444466 478889998888754 33344333 2222 3333333333332 23 34
Q ss_pred HHHHHHHHHHHh
Q 000925 1127 SDLKNLCVTAAH 1138 (1222)
Q Consensus 1127 ~DL~~L~~~Aa~ 1138 (1222)
++|+|.+-+|+.
T Consensus 419 RqL~N~iyRA~s 430 (511)
T COG3283 419 RQLKNAIYRALT 430 (511)
T ss_pred HHHHHHHHHHHH
Confidence 667666666654
No 255
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.6e-07 Score=109.20 Aligned_cols=47 Identities=40% Similarity=0.628 Sum_probs=39.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHH
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 978 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~e 978 (1222)
...|.||.|++..|..+..... + .+++|++|||||||||||+.+..-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA-----------G-----gHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA-----------G-----GHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh-----------c-----CCcEEEecCCCCchHHhhhhhccc
Confidence 3478999999999999987553 2 268999999999999999988543
No 256
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.1e-05 Score=102.65 Aligned_cols=127 Identities=23% Similarity=0.320 Sum_probs=89.6
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCC--CCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccc---
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--- 992 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~--Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~--- 992 (1222)
.|+|++++...+-+.|.. ++.++.+ |.-.+||.||.|+|||-||+++|..+ .-.++.++++++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~--------sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRR--------SRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHh--------hhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 588999999999998875 2334444 45569999999999999999999998 4678999998622
Q ss_pred ---cc---cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCccc-------CCC
Q 000925 993 ---SK---WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKE 1059 (1222)
Q Consensus 993 ---s~---~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k-------~~~ 1059 (1222)
+. |.|.. ...++.+..++.+-+||+|||||.- ...+++.|+..++..... .-.
T Consensus 635 kligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkA------------h~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 635 KLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKA------------HPDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred hccCCCcccccch--hHHHHHHHHhcCCceEEEEechhhc------------CHHHHHHHHHHHhcCccccCCCcEeecc
Confidence 22 34432 3445666667767799999999864 133455555555543322 225
Q ss_pred cEEEEEecCC
Q 000925 1060 RVLVLAATNR 1069 (1222)
Q Consensus 1060 ~VlVIaTTN~ 1069 (1222)
+++||+|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 7999999864
No 257
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.27 E-value=6e-07 Score=91.07 Aligned_cols=106 Identities=24% Similarity=0.504 Sum_probs=64.0
Q ss_pred ccceEECCCCChHHHHHHHHHHHhC---CcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1032 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg---~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1032 (1222)
..|||+|++||||+++|++|....+ .+|+.++|..+. ..++..+ ..+.|||+|||.| +
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L-----~ 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRL-----S 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS------
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHC-----C
Confidence 4599999999999999999988774 466666666532 3344444 6699999999998 2
Q ss_pred CchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhcccccccCCCCC
Q 000925 1033 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPD 1091 (1222)
Q Consensus 1033 ~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~I~lPd 1091 (1222)
...+. .+++ ++.. . ...++.+|+++..+ ..+++.+..||. .+.+.+|.
T Consensus 83 ~~~Q~---~L~~-~l~~---~---~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~-~~~i~lPp 137 (138)
T PF14532_consen 83 PEAQR---RLLD-LLKR---Q---ERSNVRLIASSSQDLEELVEEGRFSPDLYYRLS-QLEIHLPP 137 (138)
T ss_dssp HHHHH---HHHH-HHHH---C---TTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS-TCEEEE--
T ss_pred HHHHH---HHHH-HHHh---c---CCCCeEEEEEeCCCHHHHhhccchhHHHHHHhC-CCEEeCCC
Confidence 22222 2222 2222 1 12456777776432 245677777774 34555553
No 258
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.25 E-value=5.6e-06 Score=102.62 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=92.2
Q ss_pred ccceEECCCCChHHHHHHHHHHHhC--CcEEEEeccccccccccch--HHHH--------HHHHHHHHhcCCcEEEEccc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEV 1023 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~v~~s~L~s~~~G~s--e~~I--------~~lF~~A~k~~PsILfIDEI 1023 (1222)
.||||.|+.|+||++++++++.-+. .||+.+....-....+|.. +..+ ..++..|.. +||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 5799999999999999999999884 5888877655444455543 1111 123333333 89999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHhHhhhc--cCCcccCCCcEEEEEecCCC---CCCcHHHHhcccccccCCCCCHHH
Q 000925 1024 DSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPN 1094 (1222)
Q Consensus 1024 D~L~~~r~~~~~~e~l~~il~~Ll~~l--dgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~~I~I~lPd~ee 1094 (1222)
..+ .+...+.+...+.+-...+ ++.......++++|+|-|.. +.|.+.++.||+..+.+..|...+
T Consensus 103 n~~-----~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 103 ERL-----EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred ccC-----CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHH
Confidence 876 4444555556665555555 66665566889999985432 458899999999888888877554
No 259
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.25 E-value=3e-06 Score=101.40 Aligned_cols=175 Identities=18% Similarity=0.258 Sum_probs=96.8
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccccccc-----ccchHHH-------HHHHHHHHHhcCCcEEEE
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKY-------VKAVFSLASKIAPSVVFV 1020 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~-----~G~se~~-------I~~lF~~A~k~~PsILfI 1020 (1222)
..++|+|.+||||+++|+++.... +.+|+.++|..+.... +|..... ....|. ....++|||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 239 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV---EADGGTLFL 239 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCcee---ECCCCEEEE
Confidence 569999999999999999997665 5799999998754321 1211000 001122 234689999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000925 1021 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1093 (1222)
Q Consensus 1021 DEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~I~lPd~e 1093 (1222)
||||.| +...+..+..++..-.....+.......++.+|++|+.. ..+...+..|+ ..+.+.+|...
T Consensus 240 dei~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLr 313 (441)
T PRK10365 240 DEIGDI-----SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLR 313 (441)
T ss_pred eccccC-----CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999998 222333332222221111111111122457888888653 23445555566 35788888888
Q ss_pred HHHH----HHHHHHhhccc--------CCcccHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 000925 1094 NREK----IIRVILAKEEL--------ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1139 (1222)
Q Consensus 1094 eR~e----ILk~lL~k~~l--------~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~ 1139 (1222)
+|.+ +++.++.+... .++..+..|....=.-+.++|+++++.|+..
T Consensus 314 eR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 314 QRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred hcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 7755 55555554211 1122223333322122456777777766643
No 260
>PRK08181 transposase; Validated
Probab=98.23 E-value=2.5e-06 Score=96.39 Aligned_cols=69 Identities=23% Similarity=0.374 Sum_probs=48.4
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-hHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1026 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~-se~~I~~lF~~A~k~~PsILfIDEID~L 1026 (1222)
.+++|+||+|||||+||.+|++++ |..++.++..++....... .+.....++... ..+.+|+|||++.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccc
Confidence 579999999999999999999766 7788888877766543111 011122333322 34689999999876
No 261
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.20 E-value=3.3e-06 Score=90.84 Aligned_cols=180 Identities=19% Similarity=0.292 Sum_probs=92.1
Q ss_pred cCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC---cEEEEec-cc--------
Q 000925 923 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---NFINISM-SS-------- 990 (1222)
Q Consensus 923 ~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~---~fi~v~~-s~-------- 990 (1222)
.|.++..+.|.+.+.. .+...++|+||.|+|||+|++.+...+.- ..+.+.. ..
T Consensus 2 ~gR~~el~~l~~~l~~--------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 2 FGREKELEKLKELLES--------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp -S-HHHHHHHHHCHHH----------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 4556666666665541 12357999999999999999999998832 1111111 00
Q ss_pred c-------------ccc-------------cccchHHHHHHHHHHHHhcC-CcEEEEccchhhh-cCCCCCchHHHHHHH
Q 000925 991 I-------------TSK-------------WFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSML-GRRENPGEHEAMRKM 1042 (1222)
Q Consensus 991 L-------------~s~-------------~~G~se~~I~~lF~~A~k~~-PsILfIDEID~L~-~~r~~~~~~e~l~~i 1042 (1222)
+ ... ........+..++....+.. ..||+|||++.+. .... ... +
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~---~~~----~ 140 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE---DKD----F 140 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT---THH----H
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc---hHH----H
Confidence 0 000 00112345566666665543 4899999999996 2221 122 2
Q ss_pred HHhHhhhccCCcccCCCcEEEEEecCCCC------CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcc-c-CCcccH
Q 000925 1043 KNEFMVNWDGLRTKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-L-ASDVDL 1114 (1222)
Q Consensus 1043 l~~Ll~~ldgl~~k~~~~VlVIaTTN~p~------~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k~~-l-~sdidl 1114 (1222)
+..+...++.... ..++.+|.++.... .-...+..|+.. +.++..+.++..++++..+.... + .++.++
T Consensus 141 ~~~l~~~~~~~~~--~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLS--QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhccc--cCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 2233333332221 13344444433211 111234456755 88999999999999999876651 1 267778
Q ss_pred HHHHHHcCCCcH
Q 000925 1115 EGIANMADGYSG 1126 (1222)
Q Consensus 1115 ~~LA~~t~GySg 1126 (1222)
+.+...+.|+.+
T Consensus 218 ~~i~~~~gG~P~ 229 (234)
T PF01637_consen 218 EEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHTT-HH
T ss_pred HHHHHHhCCCHH
Confidence 889999888643
No 262
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.19 E-value=5e-06 Score=94.01 Aligned_cols=156 Identities=19% Similarity=0.220 Sum_probs=100.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc------EEEEecc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 989 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------fi~v~~s 989 (1222)
...++++++.+++...+.++... .+- .++|+|||||||||....+.|..+-.+ +..++.+
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~-------------~~l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM-------------PGL-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC-------------CCC-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 34677888888888888886431 122 389999999999999999999988443 1222222
Q ss_pred ccccccccchHHHHHHHHHHHHh-------cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEE
Q 000925 990 SITSKWFGEGEKYVKAVFSLASK-------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1062 (1222)
Q Consensus 990 ~L~s~~~G~se~~I~~lF~~A~k-------~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~Vl 1062 (1222)
+-.+ .+ ..+.--..|..++. ..+..+++||.|.+. ...|.++++++..+. .++.
T Consensus 103 d~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----~~AQnALRRviek~t-----------~n~r 163 (360)
T KOG0990|consen 103 DDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----RDAQNALRRVIEKYT-----------ANTR 163 (360)
T ss_pred CccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHhh-----HHHHHHHHHHHHHhc-----------cceE
Confidence 2111 11 11222235555543 256799999999983 334556665544432 4566
Q ss_pred EEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000925 1063 VLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1105 (1222)
Q Consensus 1063 VIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k 1105 (1222)
++..+|.+..+.+++++||. .+.+..-+...-...+.+++..
T Consensus 164 F~ii~n~~~ki~pa~qsRct-rfrf~pl~~~~~~~r~shi~e~ 205 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQSRCT-RFRFAPLTMAQQTERQSHIRES 205 (360)
T ss_pred EEEeccChhhcCchhhcccc-cCCCCCCChhhhhhHHHHHHhc
Confidence 77778999999999999884 5566666655555555555544
No 263
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.8e-06 Score=97.28 Aligned_cols=74 Identities=31% Similarity=0.349 Sum_probs=60.3
Q ss_pred ccCCCccccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCe
Q 000925 443 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (1222)
Q Consensus 443 vv~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~ 521 (1222)
++++.+..=-||+-=|= -+-|+-|++=|..-|+-.++ +-..+|=+-+|=|||-|||| +.++.|.||||+++..|
T Consensus 131 ~LPa~eF~glWEsLiyd--s~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPG--TGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 131 YLPAAEFDGLWESLIYD--SNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPG--TGKTSLCKALAQKLSIR 204 (423)
T ss_pred eccchhhhhhHHHHhhc--ccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCC--CChhHHHHHHHHhheee
Confidence 55666666667876444 67888888888888877665 44568999999999999999 89999999999999888
No 264
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=9.3e-06 Score=94.28 Aligned_cols=132 Identities=17% Similarity=0.219 Sum_probs=85.7
Q ss_pred CCCccceEECCCCChHHHHHHHHHHHhCC-------------------------cEEEEecccc---cccc-ccchHHHH
Q 000925 953 KPCKGILLFGPPGTGKTMLAKAVATEAGA-------------------------NFINISMSSI---TSKW-FGEGEKYV 1003 (1222)
Q Consensus 953 ~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------------------~fi~v~~s~L---~s~~-~G~se~~I 1003 (1222)
+-++.+||+||+|+|||++|+.+|+.+.+ .|+.+....- .++. -.-.-+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34567999999999999999999998743 1333332110 0000 00123456
Q ss_pred HHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh
Q 000925 1004 KAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 1079 (1222)
Q Consensus 1004 ~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr 1079 (1222)
+.+...+... ...|++||+++.| + ....+.++..++... ..+.+|.+|+.++.+.+.+++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----d-------~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----N-------LQAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----C-------HHHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 7776666542 2469999999988 2 122233444444322 335677788888899999999
Q ss_pred cccccccCCCCCHHHHHHHHHH
Q 000925 1080 RLPRRLMVNLPDAPNREKIIRV 1101 (1222)
Q Consensus 1080 RF~~~I~I~lPd~eeR~eILk~ 1101 (1222)
|+ ..+.|..|+.++..+.+..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 98 6788999998887766653
No 265
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.13 E-value=3.9e-05 Score=94.07 Aligned_cols=196 Identities=17% Similarity=0.251 Sum_probs=111.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccc---
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--- 992 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~--- 992 (1222)
..+.+|+....+-.++++..+...+. . ..+.+-+||+||+|||||++++.+|+++|+.+++...+...
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~------~---~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFS------G---SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRES 85 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhc------c---CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccc
Confidence 35677888888777888887763111 1 11224578999999999999999999999988876433220
Q ss_pred ----cccccc---hH---H---HHHHH-HHHHHh-----------cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHh
Q 000925 993 ----SKWFGE---GE---K---YVKAV-FSLASK-----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1047 (1222)
Q Consensus 993 ----s~~~G~---se---~---~I~~l-F~~A~k-----------~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll 1047 (1222)
..+.+. .. . ....+ +..++. ..+.||+|+|+=.++.. .....+.++.+++
T Consensus 86 ~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~-----~~~~f~~~L~~~l 160 (519)
T PF03215_consen 86 DNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR-----DTSRFREALRQYL 160 (519)
T ss_pred ccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch-----hHHHHHHHHHHHH
Confidence 011110 00 0 11111 111111 23579999999655321 1234445555544
Q ss_pred hhccCCcccCCC-cEEEEEec-------CCC--------CCCcHHHHhcc-cccccCCCCCHHHHHHHHHHHHhhc----
Q 000925 1048 VNWDGLRTKDKE-RVLVLAAT-------NRP--------FDLDEAVVRRL-PRRLMVNLPDAPNREKIIRVILAKE---- 1106 (1222)
Q Consensus 1048 ~~ldgl~~k~~~-~VlVIaTT-------N~p--------~~Ld~aLlrRF-~~~I~I~lPd~eeR~eILk~lL~k~---- 1106 (1222)
.. ... +++||.|- +.. ..+.+.++... -.+|.|.+-...-..+.|+.++..+
T Consensus 161 ~~-------~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 161 RS-------SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred Hc-------CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 32 123 67777771 111 13556666622 2467787777777777777777665
Q ss_pred -c--cCC-cc-cHHHHHHHcCCCcHHHHHHH
Q 000925 1107 -E--LAS-DV-DLEGIANMADGYSGSDLKNL 1132 (1222)
Q Consensus 1107 -~--l~s-di-dl~~LA~~t~GySg~DL~~L 1132 (1222)
. ..+ .. .++.|+..+.|.....|.+|
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~L 264 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSNGDIRSAINNL 264 (519)
T ss_pred cCCccCCChHHHHHHHHHhcCchHHHHHHHH
Confidence 1 112 12 37788887766555554444
No 266
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.09 E-value=6.2e-06 Score=95.77 Aligned_cols=111 Identities=21% Similarity=0.347 Sum_probs=65.6
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc---hHHHHHHHHHHHHhcCCcEEEEccchhhhcC
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1029 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~---se~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1029 (1222)
.+++|+||+|+|||+||.+||+++ |..++.++..++....... ........+... ....+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCC--
Confidence 689999999999999999999987 7888888887765532110 000111112222 235799999997652
Q ss_pred CCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCC-CC----CcHHHHhcc
Q 000925 1030 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-FD----LDEAVVRRL 1081 (1222)
Q Consensus 1030 r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p-~~----Ld~aLlrRF 1081 (1222)
.+....+.+..+++..+.. .-.+|.|||.+ .. +++.+.+|+
T Consensus 260 -~t~~~~~~Lf~iin~R~~~----------~k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 260 -ITEFSKSELFNLINKRLLR----------QKKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred -CCHHHHHHHHHHHHHHHHC----------CCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 1222233344444443311 12356667643 32 445666765
No 267
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.07 E-value=3.8e-05 Score=85.75 Aligned_cols=90 Identities=22% Similarity=0.324 Sum_probs=57.1
Q ss_pred CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCC-------------CCCCcHHHHhc
Q 000925 1014 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------------PFDLDEAVVRR 1080 (1222)
Q Consensus 1014 ~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~-------------p~~Ld~aLlrR 1080 (1222)
-|+||||||++.| + - ..+..|-..+..- -.+ +||+++|+ |+-+++.++.|
T Consensus 296 vPGVLFIDEVhML-----D---i----EcFTyL~kalES~----iaP-ivifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----D---I----ECFTYLHKALESP----IAP-IVIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhh-----h---h----HHHHHHHHHhcCC----CCc-eEEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 4899999999987 1 1 1222222222221 123 55556653 67888999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc
Q 000925 1081 LPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1121 (1222)
Q Consensus 1081 F~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t 1121 (1222)
+ .+|...+.+.++.++|++...+.+.+. ++..+..|+...
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIG 399 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhc
Confidence 8 566666777888888998887776654 344455565543
No 268
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.07 E-value=4.5e-05 Score=90.11 Aligned_cols=210 Identities=21% Similarity=0.268 Sum_probs=125.0
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCC-CCCCccceEECCCCChHHHHHHHHHHHhCCcEEEE---------eccc
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---------SMSS 990 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l-~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v---------~~s~ 990 (1222)
+|.|++++|+.|.-++.-...+. ...|. .+-.-+|+|.|.||+.|+-|.++|.+-.-.-.+.. ..+.
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~---~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKS---PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCC---CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhh
Confidence 78999999999877664321110 00110 11123489999999999999999987763322221 1111
Q ss_pred cccccccchHHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhh--ccCCcccCCCcEEEEEec
Q 000925 991 ITSKWFGEGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRTKDKERVLVLAAT 1067 (1222)
Q Consensus 991 L~s~~~G~se~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~--ldgl~~k~~~~VlVIaTT 1067 (1222)
+.....|+. .+ .+.+.+|.. +|..|||+|.+. ..+..+..+++.+-... -.|+.+.-+.++-|+|++
T Consensus 420 mkDpvTgEM--~LEGGALVLAD~---GICCIDEfDKM~-----e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAA 489 (721)
T KOG0482|consen 420 MKDPVTGEM--VLEGGALVLADG---GICCIDEFDKMD-----ESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAA 489 (721)
T ss_pred hcCCCCCee--EeccceEEEccC---ceEeehhhhhhh-----hhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhc
Confidence 111111111 00 012233433 899999999994 23344555555443333 346666667889999999
Q ss_pred CCCC-------------CCcHHHHhcccccccC-CCCCHHHHHHHHHHHHhhc--ccCC-----cccHH------HHHHH
Q 000925 1068 NRPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE--ELAS-----DVDLE------GIANM 1120 (1222)
Q Consensus 1068 N~p~-------------~Ld~aLlrRF~~~I~I-~lPd~eeR~eILk~lL~k~--~l~s-----didl~------~LA~~ 1120 (1222)
|+.. .|+.++++||+..|.+ +.|+.+.-..+.+++.--+ .-.+ .++.+ .+|+.
T Consensus 490 NPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~ 569 (721)
T KOG0482|consen 490 NPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKR 569 (721)
T ss_pred CccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhh
Confidence 8642 6889999999976544 6788887777777654321 1111 12322 34455
Q ss_pred cCCCcHHHHHHHHHHHHhhhhHH
Q 000925 1121 ADGYSGSDLKNLCVTAAHCPIRE 1143 (1222)
Q Consensus 1121 t~GySg~DL~~L~~~Aa~~airr 1143 (1222)
...+.+.+|..-+..|.....++
T Consensus 570 ~~P~vp~~l~dyi~~AYv~~Rre 592 (721)
T KOG0482|consen 570 KNPVVPEALADYITGAYVELRRE 592 (721)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Confidence 55677788888877776655444
No 269
>PF13173 AAA_14: AAA domain
Probab=98.07 E-value=8e-06 Score=81.84 Aligned_cols=69 Identities=28% Similarity=0.429 Sum_probs=47.2
Q ss_pred ccceEECCCCChHHHHHHHHHHHhC--CcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1026 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L 1026 (1222)
+-++|+||.|+|||+|++.+++.+. ..++.+++.+.........+ +...|.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 3589999999999999999998886 77888887664332111111 223333222225689999999887
No 270
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.07 E-value=1.7e-05 Score=91.43 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=48.3
Q ss_pred CccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccch-HHHHHHHHHHHHhcCCcEEEEccchhh
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 1026 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~s-e~~I~~lF~~A~k~~PsILfIDEID~L 1026 (1222)
.+|++|+||+|+|||+||.|||+++ |..+..+..++++...-... .......+... ....+|+||||..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 3689999999999999999999998 78888888777654321110 01122233322 24579999999643
No 271
>PRK06526 transposase; Provisional
Probab=98.04 E-value=6.8e-06 Score=92.26 Aligned_cols=70 Identities=24% Similarity=0.356 Sum_probs=45.9
Q ss_pred CccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-hHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1026 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~-se~~I~~lF~~A~k~~PsILfIDEID~L 1026 (1222)
..+++|+||||||||+||.+|+.++ |..+..+++.+++...... ....+...+.. -..+.+|+|||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccC
Confidence 3689999999999999999998876 6666666666554432110 00111222222 134689999999876
No 272
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.02 E-value=8.6e-05 Score=83.23 Aligned_cols=112 Identities=18% Similarity=0.298 Sum_probs=70.6
Q ss_pred CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecC------------CCCCCcHHHHhcc
Q 000925 1014 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN------------RPFDLDEAVVRRL 1081 (1222)
Q Consensus 1014 ~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN------------~p~~Ld~aLlrRF 1081 (1222)
-|+||||||++.| .-....++++.+.. +-.++++++ || .|+-++-.|+.|.
T Consensus 288 vpGVLFIDEvHML-----DIEcFsFlNrAlE~-----------d~~Piiima-TNrgit~iRGTn~~SphGiP~D~lDR~ 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHML-----DIECFSFLNRALEN-----------DMAPIIIMA-TNRGITRIRGTNYRSPHGIPIDLLDRM 350 (454)
T ss_pred ccceEEEeeehhh-----hhHHHHHHHHHhhh-----------ccCcEEEEE-cCCceEEeecCCCCCCCCCcHHHhhhh
Confidence 4789999999987 21222223322221 113455444 44 3678888999988
Q ss_pred cccccCCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHH
Q 000925 1082 PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1143 (1222)
Q Consensus 1082 ~~~I~I~lPd~eeR~eILk~lL~k~~l~-sdidl~~LA~~t~GySg~DL~~L~~~Aa~~airr 1143 (1222)
.+|.-.+.+.++-.+||+..+.++.+. .+..++.|......-+-+---+|+..|...+.++
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr 412 (454)
T KOG2680|consen 351 -LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR 412 (454)
T ss_pred -heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 567777788999999999998887654 3333455555544445555556677776666654
No 273
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.01 E-value=2e-05 Score=88.58 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=48.6
Q ss_pred CccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHH-HH-HHHHHHHHhcCCcEEEEccchhh
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK-YV-KAVFSLASKIAPSVVFVDEVDSM 1026 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~se~-~I-~~lF~~A~k~~PsILfIDEID~L 1026 (1222)
+.+++|+||||+|||+||.||++++ |..++.+..++++...-..... .. ..+.... ....+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 4689999999999999999999988 7889999988877643211100 01 1111111 23479999999754
No 274
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.99 E-value=2.8e-05 Score=76.99 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=48.4
Q ss_pred ccceEECCCCChHHHHHHHHHHHh--------CCcEEEEeccccccc--------------cc--cchHHHHHHHHHHHH
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSITSK--------------WF--GEGEKYVKAVFSLAS 1011 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el--------g~~fi~v~~s~L~s~--------------~~--G~se~~I~~lF~~A~ 1011 (1222)
+.++|+||+|+|||++++.++..+ ..+++.++++..... .. .........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 469999999999999999999887 678888887542210 01 112334444555555
Q ss_pred hcCCcEEEEccchhhh
Q 000925 1012 KIAPSVVFVDEVDSML 1027 (1222)
Q Consensus 1012 k~~PsILfIDEID~L~ 1027 (1222)
.....+|+|||+|.|.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 5555699999999984
No 275
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.98 E-value=4.4e-06 Score=88.91 Aligned_cols=69 Identities=28% Similarity=0.472 Sum_probs=45.8
Q ss_pred CccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccch-HHHHHHHHHHHHhcCCcEEEEccchh
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDS 1025 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~s-e~~I~~lF~~A~k~~PsILfIDEID~ 1025 (1222)
..+++|+||+|+|||+||.+|++++ |..+..++.++|+...-... .......+.... ...+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 4689999999999999999999887 88888898887765432110 111222333332 357999999964
No 276
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=97.97 E-value=1.2e-05 Score=67.66 Aligned_cols=50 Identities=32% Similarity=0.447 Sum_probs=43.6
Q ss_pred eEEcccC-ccceeecCCCCCccceEEEEeecCCcceEEEEEec-CcceEEEcCeec
Q 000925 154 FTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVH 207 (1222)
Q Consensus 154 ~t~G~~~-~cd~~~~~~~~s~~~c~l~~~~~~g~~~~~le~~~-~~G~v~vNg~~~ 207 (1222)
++|||.. .||+.++++.+|..||+|.+...+ ..+|++.+ .+|+ +|||+.+
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~~---~~~i~d~~s~~gt-~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGGG---RFYLIDLGSTNGT-FVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCCC---eEEEEECCCCCCe-eECCEEC
Confidence 5899999 999999999999999999986543 48899999 7888 6999875
No 277
>PRK09183 transposase/IS protein; Provisional
Probab=97.93 E-value=2.1e-05 Score=88.50 Aligned_cols=71 Identities=27% Similarity=0.414 Sum_probs=48.1
Q ss_pred CccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-hHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1026 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~-se~~I~~lF~~A~k~~PsILfIDEID~L 1026 (1222)
..+++|+||+|+|||+||.+|+..+ |..+..+++.++...+... ....+..+|... ...+.+|+|||++.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 3579999999999999999998764 7777777776655332110 011233444433 235689999999865
No 278
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.91 E-value=2e-05 Score=98.88 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=71.1
Q ss_pred CCCceee---ecceeEEcccCccce-----eecCCCCCccceEEEEeecCCcceEEEEEecC-cceEEEcCee-----cC
Q 000925 143 QNSHLSM---TGAVFTVGHNRQCDL-----YLKDPSISKNLCRLRRIENGGPSGALLEITGG-KGEVEVNGNV-----HP 208 (1222)
Q Consensus 143 ~~p~~~i---~~~~~t~G~~~~cd~-----~~~~~~~s~~~c~l~~~~~~g~~~~~le~~~~-~G~v~vNg~~-----~~ 208 (1222)
+...++| -+--|+|||...||+ .++|+.+|+.|.+|.+. ++. .||||.+| ||| +|||+. +.
T Consensus 545 ~~~~~~l~~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~--~~~--~~~~Dl~S~nGT-~v~~~~~~r~~~~ 619 (668)
T PLN02927 545 VSETLCLTKDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYK--DGA--FFLMDLRSEHGT-YVTDNEGRRYRAT 619 (668)
T ss_pred ccceeeeecCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEE--CCE--EEEEECCCCCcc-EEeCCCCceEecC
Confidence 3456888 567899999999997 99999999999999986 444 89999877 899 599888 45
Q ss_pred CCceEEeeCCCEEEEccCCCeeE
Q 000925 209 KDSQVVLRGGDELVFSPSGKHSY 231 (1222)
Q Consensus 209 k~~~~~L~~gdev~f~~~~~~ay 231 (1222)
-+..+.|++||+|.|+..++.+|
T Consensus 620 p~~~~~l~~~d~I~~g~~~~~~f 642 (668)
T PLN02927 620 PNFPARFRSSDIIEFGSDKKAAF 642 (668)
T ss_pred CCCceEeCCCCEEEeCCCcceeE
Confidence 66789999999999999877656
No 279
>PRK06921 hypothetical protein; Provisional
Probab=97.90 E-value=2.2e-05 Score=88.83 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=43.9
Q ss_pred ccceEECCCCChHHHHHHHHHHHh----CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchh
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDS 1025 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el----g~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~ 1025 (1222)
.+++|+|++|+|||+|+.+||+++ +..++.+...+++...... .......+.. -....+|+|||++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHH--hcCCCEEEEecccc
Confidence 579999999999999999999886 5677777765544321110 0111111111 22458999999953
No 280
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.89 E-value=5.7e-05 Score=76.47 Aligned_cols=71 Identities=23% Similarity=0.419 Sum_probs=48.1
Q ss_pred ceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----------------------cc--cchHHHHHHHHHHH
Q 000925 958 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------------WF--GEGEKYVKAVFSLA 1010 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~----------------------~~--G~se~~I~~lF~~A 1010 (1222)
++|+||||+|||+++..++..+ +.+++.++....... +. ..........+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 566776665432210 00 01111222345566
Q ss_pred HhcCCcEEEEccchhhhc
Q 000925 1011 SKIAPSVVFVDEVDSMLG 1028 (1222)
Q Consensus 1011 ~k~~PsILfIDEID~L~~ 1028 (1222)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 677889999999998864
No 281
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.86 E-value=3.1e-05 Score=94.55 Aligned_cols=177 Identities=24% Similarity=0.311 Sum_probs=106.6
Q ss_pred ccceEECCCCChHHHHHHHHHHHh--CCcEEEEecccc-----ccccccchHHHHHHHHHHHHh-----cCCcEEEEccc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSI-----TSKWFGEGEKYVKAVFSLASK-----IAPSVVFVDEV 1023 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el--g~~fi~v~~s~L-----~s~~~G~se~~I~~lF~~A~k-----~~PsILfIDEI 1023 (1222)
-.+||.|.+||||-.||++|-+.. ..||+.+||..+ .+.+||.........+.+-++ ...+.||+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 359999999999999999997665 578999999764 344555433322222222211 12379999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCC-------CCcHHHHhcccccccCCCCCHHHHH
Q 000925 1024 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNRE 1096 (1222)
Q Consensus 1024 D~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~-------~Ld~aLlrRF~~~I~I~lPd~eeR~ 1096 (1222)
..| +-.-|..+-+++++-...--|... .+..|.||+||++.- .+-+.+.=|+ ..+.|.+|...+|.
T Consensus 417 gd~-----p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~lr~R~ 489 (606)
T COG3284 417 GDM-----PLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPLRERS 489 (606)
T ss_pred hhc-----hHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCchhccc
Confidence 887 334455566666655544334333 457899999998641 2223333355 35677888877775
Q ss_pred H---HHHHHHhhcccC-CcccHHHHHHHcC---CCcHHHHHHHHHHHHhh
Q 000925 1097 K---IIRVILAKEELA-SDVDLEGIANMAD---GYSGSDLKNLCVTAAHC 1139 (1222)
Q Consensus 1097 e---ILk~lL~k~~l~-sdidl~~LA~~t~---GySg~DL~~L~~~Aa~~ 1139 (1222)
+ +|.+++.++.-. -..+-+.++.... --+.++|.+++..++..
T Consensus 490 d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l 539 (606)
T COG3284 490 DRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAAL 539 (606)
T ss_pred ccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Confidence 4 555555553321 1223333333332 12457788887777654
No 282
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.86 E-value=2.6e-05 Score=88.46 Aligned_cols=139 Identities=21% Similarity=0.345 Sum_probs=79.9
Q ss_pred ccceEECCCCChHHHHHHHHHHHhC-Cc--EEEEeccccccccccchHHHHHHHHHHH----Hh-------cCCcEEEEc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAG-AN--FINISMSSITSKWFGEGEKYVKAVFSLA----SK-------IAPSVVFVD 1021 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg-~~--fi~v~~s~L~s~~~G~se~~I~~lF~~A----~k-------~~PsILfID 1021 (1222)
+.+||+||+|||||++++.+...+. .. ...++++... ....++.+.+.. ++ .+..|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 4699999999999999998877663 22 3344443311 122233222211 01 122599999
Q ss_pred cchhhhcCCCCCchHHHHHHHHHhHhhhccCCccc------CCCcEEEEEecCCC---CCCcHHHHhcccccccCCCCCH
Q 000925 1022 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDA 1092 (1222)
Q Consensus 1022 EID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k------~~~~VlVIaTTN~p---~~Ld~aLlrRF~~~I~I~lPd~ 1092 (1222)
|+..- .....+.+.. .+++.+++.. .|.... .=.++.+||++++. ..+++.+.|.| .++.++.|+.
T Consensus 108 DlN~p--~~d~ygtq~~-iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~ 182 (272)
T PF12775_consen 108 DLNMP--QPDKYGTQPP-IELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSD 182 (272)
T ss_dssp TTT-S-----TTS--HH-HHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TC
T ss_pred ccCCC--CCCCCCCcCH-HHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCCh
Confidence 99853 3333333332 3455555543 122211 12568889988764 35788999988 6899999999
Q ss_pred HHHHHHHHHHHhh
Q 000925 1093 PNREKIIRVILAK 1105 (1222)
Q Consensus 1093 eeR~eILk~lL~k 1105 (1222)
+....|+..++..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988865
No 283
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.83 E-value=2.3e-05 Score=97.72 Aligned_cols=176 Identities=28% Similarity=0.337 Sum_probs=103.4
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEE-EEeccc---cccccc
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI-NISMSS---ITSKWF 996 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi-~v~~s~---L~s~~~ 996 (1222)
.|.|++.+|+.|.-.+.-.... ....+...+---+|||.|.||+|||.|.+.+++-+-..++ ...++. |.....
T Consensus 287 sIyG~e~VKkAilLqLfgGv~k--~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVKK--NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCcc--cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 5789999999886654321110 0111111122245999999999999999999988743322 221111 111000
Q ss_pred cc---hHHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhcc--CCcccCCCcEEEEEecCCC
Q 000925 997 GE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNRP 1070 (1222)
Q Consensus 997 G~---se~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ld--gl~~k~~~~VlVIaTTN~p 1070 (1222)
.. ++..+ .+.+.+| .++|+.|||+|.+ +.....++...+.+-...+. |+...-+.+.-|+||+|+.
T Consensus 365 rd~~tge~~LeaGALVlA---D~Gv~cIDEfdKm-----~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~ 436 (682)
T COG1241 365 RDKVTGEWVLEAGALVLA---DGGVCCIDEFDKM-----NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPK 436 (682)
T ss_pred EccCCCeEEEeCCEEEEe---cCCEEEEEeccCC-----ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCC
Confidence 00 00000 0122223 3489999999988 33445555555555444443 3334445788899999976
Q ss_pred C-------------CCcHHHHhcccccccC-CCCCHHHHHHHHHHHHhhc
Q 000925 1071 F-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 1106 (1222)
Q Consensus 1071 ~-------------~Ld~aLlrRF~~~I~I-~lPd~eeR~eILk~lL~k~ 1106 (1222)
. +|++.+++|||.++.+ +.|+.+.-..+.++.+..+
T Consensus 437 ~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 437 FGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred CCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 4 6788999999965544 5577766667777766654
No 284
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.83 E-value=2.9e-06 Score=98.68 Aligned_cols=175 Identities=26% Similarity=0.344 Sum_probs=88.3
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccc-----ccccc
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-----ITSKW 995 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~-----L~s~~ 995 (1222)
.|.|.+.+|..|.-.+....... ...+...+-.-+|||.|.||+|||.|.+.+++.....+ .+++.. |....
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~--~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKN--DPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCC--CCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHHHhccccc--cccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 57888888777643222111100 00001122234799999999999999998876553333 222211 11110
Q ss_pred cc---chHHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhcc--CCcccCCCcEEEEEecCC
Q 000925 996 FG---EGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNR 1069 (1222)
Q Consensus 996 ~G---~se~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ld--gl~~k~~~~VlVIaTTN~ 1069 (1222)
.. ..+..+ .+.+..|.+ +|++|||+|.+ .......+.+++.+-...+. |+...-+.+.-|+|++|+
T Consensus 102 ~~d~~~~~~~leaGalvlad~---GiccIDe~dk~-----~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP 173 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLADG---GICCIDEFDKM-----KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANP 173 (331)
T ss_dssp CCCGGTSSECEEE-HHHHCTT---SEEEECTTTT-------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--
T ss_pred ccccccceeEEeCCchhcccC---ceeeecccccc-----cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhh
Confidence 00 011111 134555655 99999999998 33344455555544333332 222223567899999987
Q ss_pred CC-------------CCcHHHHhcccccccC-CCCCHHHHHHHHHHHHhhc
Q 000925 1070 PF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 1106 (1222)
Q Consensus 1070 p~-------------~Ld~aLlrRF~~~I~I-~lPd~eeR~eILk~lL~k~ 1106 (1222)
.. .+++.+++|||.++.+ +.|+.+.-..+.++++...
T Consensus 174 ~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 174 KFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 54 4778899999977554 6677776777777777653
No 285
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00018 Score=82.13 Aligned_cols=121 Identities=13% Similarity=0.100 Sum_probs=78.0
Q ss_pred CCCccceEECCCCChHHHHHHHHHHHhCCcEE--------EEecccccccc-cc----chHHHHHHHHHHHHhc----CC
Q 000925 953 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI--------NISMSSITSKW-FG----EGEKYVKAVFSLASKI----AP 1015 (1222)
Q Consensus 953 ~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi--------~v~~s~L~s~~-~G----~se~~I~~lF~~A~k~----~P 1015 (1222)
+-++.+||+||.|+||+.+|.++|..+-+.-. .-..+++.--. .+ -.-+.++.+...+... ..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 34578999999999999999999998844210 00112211000 01 1233455555555432 23
Q ss_pred cEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCC
Q 000925 1016 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1090 (1222)
Q Consensus 1016 sILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lP 1090 (1222)
.|++||++|.|. ....|.|+..+.. ++.++++|..|+.++.+.+++++|+ ..+.|+.+
T Consensus 97 kv~ii~~ad~mt------------~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT------------LDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred eEEEEechhhcC------------HHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 599999999982 2334555665554 4467899999999999999999998 45566544
No 286
>PF05729 NACHT: NACHT domain
Probab=97.82 E-value=0.0001 Score=75.29 Aligned_cols=140 Identities=16% Similarity=0.259 Sum_probs=73.6
Q ss_pred cceEECCCCChHHHHHHHHHHHhC--------Cc-EEEEeccccccc------------cccchHHHHHH-HHHHHHhcC
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAG--------AN-FINISMSSITSK------------WFGEGEKYVKA-VFSLASKIA 1014 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg--------~~-fi~v~~s~L~s~------------~~G~se~~I~~-lF~~A~k~~ 1014 (1222)
-++|+|++|+|||++++.++..+. .. ++.+.+...... ........+.. +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 379999999999999999987761 12 223333222111 00011111122 222334455
Q ss_pred CcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhccc--ccccCCCCCH
Q 000925 1015 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP--RRLMVNLPDA 1092 (1222)
Q Consensus 1015 PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~--~~I~I~lPd~ 1092 (1222)
..+|+||.+|.+...... ........++..++.. .. ..++.+|.|+.+ ..... +.+++. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~~~--~~----~~~~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLLPQ--AL----PPGVKLIITSRP-RAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHhhh--cc----CCCCeEEEEEcC-ChHHH-HHHhcCCCcEEEECCCCH
Confidence 679999999998532211 0111222333333322 01 123444444432 22211 444332 3478888899
Q ss_pred HHHHHHHHHHHhh
Q 000925 1093 PNREKIIRVILAK 1105 (1222)
Q Consensus 1093 eeR~eILk~lL~k 1105 (1222)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988763
No 287
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.79 E-value=0.00045 Score=84.65 Aligned_cols=174 Identities=21% Similarity=0.231 Sum_probs=98.3
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEE-Eecccccc--ccc-
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSSITS--KWF- 996 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~-v~~s~L~s--~~~- 996 (1222)
.|.+++++|+.|.-.+.- .....+.+.+-.+---+|||+|.||||||.|.+.+++.+-.-.+. -..+.-.+ -|+
T Consensus 430 sIye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 578899999887654432 111222333323333569999999999999999999877221111 00000000 000
Q ss_pred --cchHHHHH--HHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhH--hhhccCCcccCCCcEEEEEecCCC
Q 000925 997 --GEGEKYVK--AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF--MVNWDGLRTKDKERVLVLAATNRP 1070 (1222)
Q Consensus 997 --G~se~~I~--~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~L--l~~ldgl~~k~~~~VlVIaTTN~p 1070 (1222)
+.+.+.+- .++.. ...+|..|||+|.| +...+..+.+++++- -....|+...-+.+.-|||++|+.
T Consensus 508 rd~dtkqlVLesGALVL---SD~GiCCIDEFDKM-----~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~ 579 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVL---SDNGICCIDEFDKM-----SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPI 579 (804)
T ss_pred ecCccceeeeecCcEEE---cCCceEEchhhhhh-----hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccc
Confidence 00000000 01111 13489999999999 223344444554433 333445555556888999999853
Q ss_pred C-------------CCcHHHHhcccccc-cCCCCCHHHHHHHHHHHHh
Q 000925 1071 F-------------DLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILA 1104 (1222)
Q Consensus 1071 ~-------------~Ld~aLlrRF~~~I-~I~lPd~eeR~eILk~lL~ 1104 (1222)
. .|++.+++||+.++ .++.|+...-+.|-.++..
T Consensus 580 ~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 580 RSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred cccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHH
Confidence 2 67899999998654 4466776644555555543
No 288
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.73 E-value=0.00025 Score=86.26 Aligned_cols=201 Identities=18% Similarity=0.210 Sum_probs=118.6
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCC-CCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecc----cccccc
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS----SITSKW 995 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l-~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s----~L~s~~ 995 (1222)
.|.|.+.+|.-|.-.+.--..... ..+. .+---+|+|.|.||+||+-+.++.+.-+-..++..--+ -|....
T Consensus 346 sIyGhe~VK~GilL~LfGGv~K~a---~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaV 422 (764)
T KOG0480|consen 346 SIYGHELVKAGILLSLFGGVHKSA---GEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAV 422 (764)
T ss_pred cccchHHHHhhHHHHHhCCccccC---CCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEE
Confidence 688999999888665542222111 1111 12223599999999999999999987764333322110 011100
Q ss_pred cc--chHHH-H-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhc--cCCcccCCCcEEEEEecCC
Q 000925 996 FG--EGEKY-V-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNR 1069 (1222)
Q Consensus 996 ~G--~se~~-I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~l--dgl~~k~~~~VlVIaTTN~ 1069 (1222)
+. ++..+ + .+.+..|. .+|..|||+|.| +..+|.++.+.+.+-...+ .|+...-+.+.-||||+|+
T Consensus 423 vkD~esgdf~iEAGALmLAD---nGICCIDEFDKM-----d~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANP 494 (764)
T KOG0480|consen 423 VKDEESGDFTIEAGALMLAD---NGICCIDEFDKM-----DVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANP 494 (764)
T ss_pred EecCCCCceeeecCcEEEcc---CceEEechhccc-----ChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCC
Confidence 00 00000 0 01222333 389999999998 3334556666655444433 3333334577889999987
Q ss_pred CC-------------CCcHHHHhccccc-ccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHH
Q 000925 1070 PF-------------DLDEAVVRRLPRR-LMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVT 1135 (1222)
Q Consensus 1070 p~-------------~Ld~aLlrRF~~~-I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~DL~~L~~~ 1135 (1222)
.. .|...+++||+.. |.++-|+...-..|-++++..+...++ -...-..|+..+++..+..
T Consensus 495 v~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~-----~~~~~~~~~~e~vrkYi~y 569 (764)
T KOG0480|consen 495 VGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDD-----ATERVCVYTLEQVRKYIRY 569 (764)
T ss_pred cCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccc-----cccccccccHHHHHHHHHH
Confidence 52 5778999999864 455778888888888888876432221 1112246788888777776
Q ss_pred HH
Q 000925 1136 AA 1137 (1222)
Q Consensus 1136 Aa 1137 (1222)
|.
T Consensus 570 AR 571 (764)
T KOG0480|consen 570 AR 571 (764)
T ss_pred HH
Confidence 65
No 289
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.72 E-value=0.00018 Score=79.95 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=74.5
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1035 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1035 (1222)
.+-.++||.|||||..++.+|+.+|.+++.++|.+.++ ...+.++|.-+... .+.+.+||+++| +...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-----~~~v 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-----SEEV 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS-----SHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh-----hHHH
Confidence 45678999999999999999999999999999988543 34677777666554 489999999988 2111
Q ss_pred HHHHHHHHHhHhhhccCC---------cccCCCcEEEEEecCC----CCCCcHHHHhcccccccCCCCCHHHHHHH
Q 000925 1036 HEAMRKMKNEFMVNWDGL---------RTKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKI 1098 (1222)
Q Consensus 1036 ~e~l~~il~~Ll~~ldgl---------~~k~~~~VlVIaTTN~----p~~Ld~aLlrRF~~~I~I~lPd~eeR~eI 1098 (1222)
-......+..+...+..- ...-+..+-+..|.|+ ...|++.++.-| +.+.+..||...-.++
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHH
Confidence 112222222222222211 0011233445556653 357888887777 6788888987654443
No 290
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.00094 Score=76.48 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=75.5
Q ss_pred CCCccceEECCCCChHHHHHHHHHHHhCCcEE-------E---------Eecccccccc-cc--chHHHHHHHHHHHHhc
Q 000925 953 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI-------N---------ISMSSITSKW-FG--EGEKYVKAVFSLASKI 1013 (1222)
Q Consensus 953 ~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi-------~---------v~~s~L~s~~-~G--~se~~I~~lF~~A~k~ 1013 (1222)
+.++.+||+|| .||+.+|.++|..+-+.-. . -+.+++.--. .| -.-..|+.+...+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34578999996 6899999999988733110 0 0112221100 01 1124566655555432
Q ss_pred ----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCC
Q 000925 1014 ----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1089 (1222)
Q Consensus 1014 ----~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~l 1089 (1222)
...|++||++|.|. ....|.|+..++. ++.++++|.+|+.++.+.+++++|+ ..+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 23699999999982 2344666666655 3466888889999999999999999 5677754
No 291
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=97.66 E-value=0.00018 Score=76.58 Aligned_cols=76 Identities=29% Similarity=0.421 Sum_probs=63.9
Q ss_pred ceeeecceeEEcccCccceeecCCCCCccceEEEEeecCCcceEEEEEec-CcceEEEcCeecCCCceEEeeCCCEEEEc
Q 000925 146 HLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (1222)
Q Consensus 146 ~~~i~~~~~t~G~~~~cd~~~~~~~~s~~~c~l~~~~~~g~~~~~le~~~-~~G~v~vNg~~~~k~~~~~L~~gdev~f~ 224 (1222)
-..+....+|+||+..+|+.|+|..+|..||.+++.+.. .+|||.+ +||| +|||.++.. .+.|+.||.|.|+
T Consensus 83 ~~~~~~~~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~~----~~~~d~~S~nGt-~vn~~~v~~--~~~l~~gd~i~i~ 155 (191)
T COG1716 83 VIVLGEPVTTIGRDPDNDIVLDDDVVSRRHAELRREGNE----VFLEDLGSTNGT-YVNGEKVRQ--RVLLQDGDVIRLG 155 (191)
T ss_pred ccccccceEEeccCCCCCEEcCCCccccceEEEEEeCCc----eEEEECCCCcce-EECCeEccC--cEEcCCCCEEEEC
Confidence 334445699999999999999999999999999987544 6667766 6688 699999997 6999999999998
Q ss_pred cCCC
Q 000925 225 PSGK 228 (1222)
Q Consensus 225 ~~~~ 228 (1222)
....
T Consensus 156 ~~~~ 159 (191)
T COG1716 156 GTLA 159 (191)
T ss_pred ccce
Confidence 7654
No 292
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.00055 Score=76.96 Aligned_cols=121 Identities=7% Similarity=0.042 Sum_probs=78.0
Q ss_pred CCCccceEECCCCChHHHHHHHHHHHhCCcE--------------EEEeccccccccc---cchHHHHHHHHHHHHh---
Q 000925 953 KPCKGILLFGPPGTGKTMLAKAVATEAGANF--------------INISMSSITSKWF---GEGEKYVKAVFSLASK--- 1012 (1222)
Q Consensus 953 ~Pp~gILL~GPpGTGKT~LArAIA~elg~~f--------------i~v~~s~L~s~~~---G~se~~I~~lF~~A~k--- 1012 (1222)
.+++.+||+||.|+||..+|.++|+.+-+.- -.-+.+++.--+. .-..+.++.+......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4568899999999999999999998873211 0001122111000 0112334444433321
Q ss_pred --cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCC
Q 000925 1013 --IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1090 (1222)
Q Consensus 1013 --~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lP 1090 (1222)
....|++|+++|.|- ....+.|+..++. ++.++++|.+|+.++.+.+++++|+. .+.++.+
T Consensus 85 e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRCq-~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRCV-QYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhee-eeecCCh
Confidence 124699999999982 3345667777665 44778999999999999999999984 4555554
No 293
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.60 E-value=0.00033 Score=90.33 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=31.0
Q ss_pred CCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEecC
Q 000925 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1222)
Q Consensus 492 ~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~~ 528 (1222)
.+.+||.||+| ..+++|||+||+.++.++.-++..
T Consensus 347 ~~~lll~GppG--~GKT~lAk~iA~~l~~~~~~i~~~ 381 (775)
T TIGR00763 347 GPILCLVGPPG--VGKTSLGKSIAKALNRKFVRFSLG 381 (775)
T ss_pred CceEEEECCCC--CCHHHHHHHHHHHhcCCeEEEeCC
Confidence 35699999999 899999999999999998888753
No 294
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.60 E-value=0.00038 Score=78.32 Aligned_cols=156 Identities=16% Similarity=0.099 Sum_probs=82.2
Q ss_pred CccceEECCCCChHHHHHHHHHHH--hC--Cc-EEEEeccc----------cccc---c------ccchHHHHHHHHHHH
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATE--AG--AN-FINISMSS----------ITSK---W------FGEGEKYVKAVFSLA 1010 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~e--lg--~~-fi~v~~s~----------L~s~---~------~G~se~~I~~lF~~A 1010 (1222)
.+-|.|+|++|+|||+||..+++. .. +. ++.++... +... . ....+.....+.. .
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~ 97 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE-L 97 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH-H
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh-h
Confidence 356999999999999999999977 32 22 12233221 0000 0 0112233333433 3
Q ss_pred HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCC
Q 000925 1011 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1090 (1222)
Q Consensus 1011 ~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lP 1090 (1222)
-...+.+|+||+++... .+..+...+.. ...+..||.||...... ..+... ...+.+...
T Consensus 98 L~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~----~~~~~kilvTTR~~~v~-~~~~~~-~~~~~l~~L 157 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEE--------------DLEELREPLPS----FSSGSKILVTTRDRSVA-GSLGGT-DKVIELEPL 157 (287)
T ss_dssp HCCTSEEEEEEEE-SHH--------------HH-------HC----HHSS-EEEEEESCGGGG-TTHHSC-EEEEECSS-
T ss_pred hccccceeeeeeecccc--------------ccccccccccc----ccccccccccccccccc-cccccc-ccccccccc
Confidence 34458999999997541 11222221111 11345667777654322 111111 356888889
Q ss_pred CHHHHHHHHHHHHhhcc----cCCcccHHHHHHHcCCCcHHHHHHH
Q 000925 1091 DAPNREKIIRVILAKEE----LASDVDLEGIANMADGYSGSDLKNL 1132 (1222)
Q Consensus 1091 d~eeR~eILk~lL~k~~----l~sdidl~~LA~~t~GySg~DL~~L 1132 (1222)
+.++-.++|........ ...+.....|+..+.|+ |-.|..+
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 99999999998876543 11233467888888764 5445444
No 295
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.58 E-value=0.00012 Score=81.63 Aligned_cols=132 Identities=24% Similarity=0.363 Sum_probs=80.5
Q ss_pred cceEECCCCChHHHHHHHHH------HHhCCcEEEEeccccccc-----cccchHHHHHHHHHHHHh--------cCCcE
Q 000925 957 GILLFGPPGTGKTMLAKAVA------TEAGANFINISMSSITSK-----WFGEGEKYVKAVFSLASK--------IAPSV 1017 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA------~elg~~fi~v~~s~L~s~-----~~G~se~~I~~lF~~A~k--------~~PsI 1017 (1222)
.|||.||.|.||++||+.|- +++..+|+.+||+.+.+. .|| .++..|.-|+. ...++
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfg----hvkgaftga~~~r~gllrsadggm 285 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFG----HVKGAFTGARESREGLLRSADGGM 285 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHh----hhccccccchhhhhhhhccCCCce
Confidence 59999999999999999984 445789999999987654 222 34445544432 23579
Q ss_pred EEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCC-------CCCCcHHHHhcccccccCCCC
Q 000925 1018 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------PFDLDEAVVRRLPRRLMVNLP 1090 (1222)
Q Consensus 1018 LfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~-------p~~Ld~aLlrRF~~~I~I~lP 1090 (1222)
||+|||..|. ..++..+.+.+.+-...--|-...-...+.+|+-|-+ ...+-+.+..|+ ..+.|.+|
T Consensus 286 lfldeigelg-----adeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~lp 359 (531)
T COG4650 286 LFLDEIGELG-----ADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTLP 359 (531)
T ss_pred EehHhhhhcC-----ccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeecc
Confidence 9999999883 2344444444443322211111111234556655532 122334444566 46788899
Q ss_pred CHHHHHHH
Q 000925 1091 DAPNREKI 1098 (1222)
Q Consensus 1091 d~eeR~eI 1098 (1222)
...+|.+=
T Consensus 360 gl~qr~ed 367 (531)
T COG4650 360 GLRQRQED 367 (531)
T ss_pred ccccCccc
Confidence 88877653
No 296
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.0013 Score=75.80 Aligned_cols=125 Identities=10% Similarity=0.066 Sum_probs=82.0
Q ss_pred CccceEECCCCChHHHHHHHHHHHhCC-------------cEEEEeccccccccccchHHHHHHHHHHHHh-----cCCc
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEAGA-------------NFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPS 1016 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~elg~-------------~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k-----~~Ps 1016 (1222)
.+.+||+|+.|.||+.+|+++++.+-+ .++.++.. +..+ .-..++.+.+.+.. ....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCce
Confidence 356899999999999999999988732 12222200 1111 12334444444322 2446
Q ss_pred EEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHH
Q 000925 1017 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 1096 (1222)
Q Consensus 1017 ILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~ 1096 (1222)
|++||++|.+. ....+.|+..+.. ++..+++|.+|+.+..+.+++++|+ .++.+..|+.++-.
T Consensus 93 vvII~~~e~m~------------~~a~NaLLK~LEE----Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 93 ILIIKNIEKTS------------NSLLNALLKTIEE----PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred EEEEecccccC------------HHHHHHHHHHhhC----CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 99999999872 2234456666555 3356777777778899999999998 57889888877766
Q ss_pred HHHHH
Q 000925 1097 KIIRV 1101 (1222)
Q Consensus 1097 eILk~ 1101 (1222)
+.+..
T Consensus 156 ~~l~~ 160 (299)
T PRK07132 156 AKLLS 160 (299)
T ss_pred HHHHH
Confidence 65543
No 297
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.50 E-value=0.00033 Score=80.11 Aligned_cols=161 Identities=22% Similarity=0.370 Sum_probs=93.5
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHH---HHhCCcEEEEeccc--cc---
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA---TEAGANFINISMSS--IT--- 992 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA---~elg~~fi~v~~s~--L~--- 992 (1222)
.+.|..+..+.+.+++..-. +..-.+.++|.||.|+|||+|..... ++.|-+|+.+...- ..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~----------~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTI----------LHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred ceeehHHHHHHHHHHHHHHH----------HhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 46777777778877765321 22234679999999999999766553 35566666554321 11
Q ss_pred ----------------cccccchHHHHHHHHHHHHhc----CCcEEE-EccchhhhcCCCCCchHHHHHHHHHhHhhhcc
Q 000925 993 ----------------SKWFGEGEKYVKAVFSLASKI----APSVVF-VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1051 (1222)
Q Consensus 993 ----------------s~~~G~se~~I~~lF~~A~k~----~PsILf-IDEID~L~~~r~~~~~~e~l~~il~~Ll~~ld 1051 (1222)
.+.+|.....+..+....+.. +..||| +||||..++.. + ++++..+-
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~---------r---QtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS---------R---QTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch---------h---hHHHHHHH
Confidence 112333333344444333221 112555 57999875332 1 22333332
Q ss_pred CCcccCCCcEEEEEecCCCCC---CcHHHHhccccc-ccC-CCCCHHHHHHHHHHHH
Q 000925 1052 GLRTKDKERVLVLAATNRPFD---LDEAVVRRLPRR-LMV-NLPDAPNREKIIRVIL 1103 (1222)
Q Consensus 1052 gl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~~~-I~I-~lPd~eeR~eILk~lL 1103 (1222)
.+....+.++.||+.|.+.+. |...+.+||.++ |++ +.....+-..+++..+
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 233334588999999977654 456777799876 333 3334777788888776
No 298
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.50 E-value=0.0001 Score=88.91 Aligned_cols=164 Identities=23% Similarity=0.331 Sum_probs=89.8
Q ss_pred hHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHH
Q 000925 899 NEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 978 (1222)
Q Consensus 899 ~e~~~~ll~~vIp~~e~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~e 978 (1222)
..+..++++.+.| .|.|+..+|..+.-.+.--..+-. -.+-. .+---++||+|.|||||+-+.+.+++-
T Consensus 437 ~~i~~rIiaSiaP---------sIyGh~~VK~AvAlaLfGGv~kn~-~~khk-vRGDinvLL~GDPGTaKSQFLKY~eK~ 505 (854)
T KOG0477|consen 437 PPIKERIIASIAP---------SIYGHEDVKRAVALALFGGVPKNP-GGKHK-VRGDINVLLLGDPGTAKSQFLKYAEKT 505 (854)
T ss_pred ccHHHHHHHhhCc---------hhhchHHHHHHHHHHHhcCCccCC-CCCce-eccceeEEEecCCCccHHHHHHHHHhc
Confidence 3344445555554 578999999988765542111100 00000 011124999999999999999999987
Q ss_pred hCCcEEEE---------eccc----cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHh
Q 000925 979 AGANFINI---------SMSS----ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1045 (1222)
Q Consensus 979 lg~~fi~v---------~~s~----L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~ 1045 (1222)
....++.. .+.. +...|.=++ +.+.+|.+ +|.+|||+|.|-.+. .......+.+
T Consensus 506 s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEa-----GALVLADk---GvClIDEFDKMndqD-----RtSIHEAMEQ 572 (854)
T KOG0477|consen 506 SPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEA-----GALVLADK---GVCLIDEFDKMNDQD-----RTSIHEAMEQ 572 (854)
T ss_pred CcceeEeccCCccccceeEEEeeCCccceeeecc-----CeEEEccC---ceEEeehhhhhcccc-----cchHHHHHHh
Confidence 75444332 1111 111222111 23334555 899999999994222 1222222222
Q ss_pred Hhhhc--cCCcccCCCcEEEEEecCCC-----------C--CCcHHHHhccccccc
Q 000925 1046 FMVNW--DGLRTKDKERVLVLAATNRP-----------F--DLDEAVVRRLPRRLM 1086 (1222)
Q Consensus 1046 Ll~~l--dgl~~k~~~~VlVIaTTN~p-----------~--~Ld~aLlrRF~~~I~ 1086 (1222)
--..+ .|+.+.-+.++.||+|+|+. + +|.+.+++||+....
T Consensus 573 QSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcV 628 (854)
T KOG0477|consen 573 QSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCV 628 (854)
T ss_pred cchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeee
Confidence 11111 22333334678999999872 1 566788999975433
No 299
>CHL00181 cbbX CbbX; Provisional
Probab=97.49 E-value=0.00049 Score=78.80 Aligned_cols=128 Identities=16% Similarity=0.158 Sum_probs=77.1
Q ss_pred CeEEEEcchhhhhcc------ChhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCCC
Q 000925 676 PLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPD 749 (1222)
Q Consensus 676 P~Ilfi~die~~l~~------~~~~~~~l~~~L~~l~g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~pd 749 (1222)
+-||||||++.+... ..+....|...++...++++||++... +. .+.++
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~-~~------------------~~~~~------ 177 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYK-DR------------------MDKFY------ 177 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCc-HH------------------HHHHH------
Confidence 359999999985321 245556666677777788888888651 00 00011
Q ss_pred CccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHh---hcchhhhccchhhHHHHHhhhCCCCcccchh
Q 000925 750 NFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLE---RDVETLKGQSNIISIRSVLSRNGLDCVDLES 826 (1222)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e---~~Lpd~~gR~~Il~IhT~l~~~~l~~~dLe~ 826 (1222)
.....|.++|+..|.++++..+.+...|...+. ..+.... ...+... +.+
T Consensus 178 -------------~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~---i~~---------- 230 (287)
T CHL00181 178 -------------ESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDY---IKK---------- 230 (287)
T ss_pred -------------hcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHH---HHH----------
Confidence 112567889999999999998888776555443 3333221 1111111 000
Q ss_pred hhccccCCC-HHHHHHHHhhhhhhhhccccC
Q 000925 827 LCIKDQTLT-TEGVEKIVGWALSHHFMHCSE 856 (1222)
Q Consensus 827 La~~tkg~s-gadI~~Lv~~A~s~Al~r~~~ 856 (1222)
. .....|+ +-+++.++..|.....+|...
T Consensus 231 ~-~~~~~~GNaR~vrn~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 231 R-MEQPLFANARSVRNALDRARMRQANRIFE 260 (287)
T ss_pred h-CCCCCCccHHHHHHHHHHHHHHHHHHHHc
Confidence 0 1134567 789999999888877776644
No 300
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.46 E-value=0.0039 Score=75.37 Aligned_cols=199 Identities=16% Similarity=0.207 Sum_probs=102.8
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEecc-------
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS------- 989 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s------- 989 (1222)
.+.+++.-...-..++++.+.. ...|... -+.+-+||+||+|||||+.++.|++++|..++...-+
T Consensus 79 ~t~eeLAVHkkKI~eVk~WL~~----~~~~~~~---l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~ 151 (634)
T KOG1970|consen 79 RTLEELAVHKKKISEVKQWLKQ----VAEFTPK---LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPE 151 (634)
T ss_pred ccHHHHhhhHHhHHHHHHHHHH----HHHhccC---CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccc
Confidence 4566776666666666665541 1111111 1123489999999999999999999999998876622
Q ss_pred ccccccccch------HHHHHHHHHHHHh------------cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhcc
Q 000925 990 SITSKWFGEG------EKYVKAVFSLASK------------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1051 (1222)
Q Consensus 990 ~L~s~~~G~s------e~~I~~lF~~A~k------------~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ld 1051 (1222)
.+.....+-+ -.........+.+ ..+.+|+|||+=..+... ..+..+.++..+. ..
T Consensus 152 ~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~~y~-s~- 225 (634)
T KOG1970|consen 152 NLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLRLYV-SI- 225 (634)
T ss_pred cccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHHHHH-hc-
Confidence 1111111111 1112223333322 235689999997664321 2334444444222 11
Q ss_pred CCcccCCCcEEEEEec-CCCCCCcHHHH--------hcccccccCCCCCHHHHHHHHHHHHhhcccC-C------cccHH
Q 000925 1052 GLRTKDKERVLVLAAT-NRPFDLDEAVV--------RRLPRRLMVNLPDAPNREKIIRVILAKEELA-S------DVDLE 1115 (1222)
Q Consensus 1052 gl~~k~~~~VlVIaTT-N~p~~Ld~aLl--------rRF~~~I~I~lPd~eeR~eILk~lL~k~~l~-s------didl~ 1115 (1222)
...++++|.|- ..++..+...+ -|+ ..|.|.+-...-..+.|+.++..+... . ...++
T Consensus 226 -----g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 226 -----GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred -----CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 12344444443 22233222111 144 356676666666777777777664322 1 33345
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHh
Q 000925 1116 GIANMADGYSGSDLKNLCVTAAH 1138 (1222)
Q Consensus 1116 ~LA~~t~GySg~DL~~L~~~Aa~ 1138 (1222)
.++....| ||+..++....
T Consensus 300 ~i~~~s~G----DIRsAInsLQl 318 (634)
T KOG1970|consen 300 LICQGSGG----DIRSAINSLQL 318 (634)
T ss_pred HHHHhcCc----cHHHHHhHhhh
Confidence 55555444 55555554433
No 301
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00066 Score=70.83 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=22.2
Q ss_pred ccceEECCCCChHHHHHHHHHHHh
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA 979 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el 979 (1222)
..|+++|+||+|||+++..|+..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 569999999999999999999877
No 302
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.37 E-value=0.0021 Score=77.12 Aligned_cols=85 Identities=26% Similarity=0.375 Sum_probs=62.3
Q ss_pred ccCCCccccccccccccchhHHHHHHHHhhhhccccccccccc-CCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCe
Q 000925 443 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYA-SDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (1222)
Q Consensus 443 vv~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~-~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~ 521 (1222)
+..|++|.-.+|++ .+=-|+.|.+|..|+|-|.+.-...... .+.....+.|||.||+| ..+++|||+||+.++++
T Consensus 59 ~~~p~~i~~~L~~~-ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~G--tGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 59 LPTPKEIKAHLDQY-VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTG--SGKTLLAQTLARILDVP 135 (412)
T ss_pred CCCHHHHHHHHhhH-eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCC--CCHHHHHHHHHHHhCCC
Confidence 44555555555542 1224889999999999888775332111 13444567899999999 89999999999999999
Q ss_pred EEEEecCCC
Q 000925 522 LLIVDSLLL 530 (1222)
Q Consensus 522 lL~~D~~~~ 530 (1222)
+..+|.+.|
T Consensus 136 f~~id~~~l 144 (412)
T PRK05342 136 FAIADATTL 144 (412)
T ss_pred ceecchhhc
Confidence 999998776
No 303
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.35 E-value=0.0004 Score=67.75 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=21.0
Q ss_pred ceEECCCCChHHHHHHHHHHHhC
Q 000925 958 ILLFGPPGTGKTMLAKAVATEAG 980 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~elg 980 (1222)
|+|+||||+|||+||+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999988874
No 304
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.29 E-value=0.0013 Score=69.37 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=46.0
Q ss_pred ceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccc-----------------------chH-----
Q 000925 958 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG-----------------------EGE----- 1000 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~------~~G-----------------------~se----- 1000 (1222)
+||+||||||||+|+..++.+. |.+++.++..+-... .+| ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 6899999999999999887654 666666654321000 000 000
Q ss_pred HHHHHHHHHHHhcCCcEEEEccchhhhc
Q 000925 1001 KYVKAVFSLASKIAPSVVFVDEVDSMLG 1028 (1222)
Q Consensus 1001 ~~I~~lF~~A~k~~PsILfIDEID~L~~ 1028 (1222)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1134455555667899999999988753
No 305
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.26 E-value=0.0014 Score=74.91 Aligned_cols=82 Identities=18% Similarity=0.116 Sum_probs=50.8
Q ss_pred CCeEEEEcchhhhhcc------ChhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhccccCC
Q 000925 675 SPLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFP 748 (1222)
Q Consensus 675 ~P~Ilfi~die~~l~~------~~~~~~~l~~~L~~l~g~vvvIgS~~~~d~~k~k~~~~~~~l~~~~~~~~~l~d~~~p 748 (1222)
.+-||||||++.+... ..+..+.|-..|+.-.++++||++... +. +|.
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~-~~----------------------~~~--- 174 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYK-DR----------------------MDS--- 174 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCc-HH----------------------HHH---
Confidence 3469999999984221 233444555566666678888888762 00 110
Q ss_pred CCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHH
Q 000925 749 DNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 794 (1222)
Q Consensus 749 d~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~ 794 (1222)
.......|..+|+..|.++++.++.+...|...+
T Consensus 175 ------------~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 175 ------------FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred ------------HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 1112356778888888898888887766555433
No 306
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.26 E-value=0.00091 Score=72.29 Aligned_cols=73 Identities=23% Similarity=0.434 Sum_probs=49.4
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccccc-----------------------cchHHHHHHHHHH
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF-----------------------GEGEKYVKAVFSL 1009 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~-----------------------G~se~~I~~lF~~ 1009 (1222)
.-++|+||||+|||+++..++... +...+.++...+....+ .+....+..+...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 92 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSKF 92 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHHH
Confidence 448999999999999999987654 66778887754110000 0111224445555
Q ss_pred HHhcCCcEEEEccchhhhc
Q 000925 1010 ASKIAPSVVFVDEVDSMLG 1028 (1222)
Q Consensus 1010 A~k~~PsILfIDEID~L~~ 1028 (1222)
+.+..+.+|+||-|..++.
T Consensus 93 ~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 93 IDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HhhcCccEEEEeCcHHHhH
Confidence 6666889999999998863
No 307
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.24 E-value=0.00035 Score=90.66 Aligned_cols=138 Identities=27% Similarity=0.363 Sum_probs=88.1
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEecccccc--cccc-----c--hH-HHHHHHHHHHHhcCCcEEEEccchh
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFG-----E--GE-KYVKAVFSLASKIAPSVVFVDEVDS 1025 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s--~~~G-----~--se-~~I~~lF~~A~k~~PsILfIDEID~ 1025 (1222)
+++||.|.||+|||.|+.++|+..|..+++++.++... ..+| + ++ .....-|-.|.+. ..-+++||+..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehhhh
Confidence 46999999999999999999999999999999876221 1122 1 11 1233345455443 37889999963
Q ss_pred hhcCCCCCchHHHHHHHHHhHhhhccCC-------cccCCCcEEEEEecCCC------CCCcHHHHhcccccccCCCCCH
Q 000925 1026 MLGRRENPGEHEAMRKMKNEFMVNWDGL-------RTKDKERVLVLAATNRP------FDLDEAVVRRLPRRLMVNLPDA 1092 (1222)
Q Consensus 1026 L~~~r~~~~~~e~l~~il~~Ll~~ldgl-------~~k~~~~VlVIaTTN~p------~~Ld~aLlrRF~~~I~I~lPd~ 1092 (1222)
- .|..+ .-++..+...... .-+...+++|.||-|+. ..|+..|+.|| .++.++..+.
T Consensus 1623 a--------SQSVl-EGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~lt~ 1692 (4600)
T COG5271 1623 A--------SQSVL-EGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDGLTT 1692 (4600)
T ss_pred h--------HHHHH-HHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEeccccc
Confidence 2 22222 1223333222211 11234678999998875 47999999999 4677777666
Q ss_pred HHHHHHHHHHHh
Q 000925 1093 PNREKIIRVILA 1104 (1222)
Q Consensus 1093 eeR~eILk~lL~ 1104 (1222)
++...|....+.
T Consensus 1693 dDi~~Ia~~~yp 1704 (4600)
T COG5271 1693 DDITHIANKMYP 1704 (4600)
T ss_pred chHHHHHHhhCC
Confidence 666665555443
No 308
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.23 E-value=0.0008 Score=79.40 Aligned_cols=103 Identities=20% Similarity=0.339 Sum_probs=57.1
Q ss_pred CCCCccceEECCCCChHHHHHHHHHHHhCC-cEEEEeccccccccccc------hHHHHHHHHHHHHhcCCcEEEEccch
Q 000925 952 TKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSITSKWFGE------GEKYVKAVFSLASKIAPSVVFVDEVD 1024 (1222)
Q Consensus 952 ~~Pp~gILL~GPpGTGKT~LArAIA~elg~-~fi~v~~s~L~s~~~G~------se~~I~~lF~~A~k~~PsILfIDEID 1024 (1222)
..+++|+.|||++|+|||+|+-.....+.. .-..+.-..++...... ...-+..+-....+ .-.||+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 346799999999999999999999877743 11111111111110000 01112222221111 22499999997
Q ss_pred hhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCC
Q 000925 1025 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1070 (1222)
Q Consensus 1025 ~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p 1070 (1222)
.- +.++...+.+++..+.. ..+++|+|+|.+
T Consensus 138 V~-----DiaDAmil~rLf~~l~~----------~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT-----DIADAMILKRLFEALFK----------RGVVLVATSNRP 168 (362)
T ss_pred cc-----chhHHHHHHHHHHHHHH----------CCCEEEecCCCC
Confidence 53 33334445555555431 568999999864
No 309
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=97.22 E-value=0.0012 Score=81.27 Aligned_cols=89 Identities=28% Similarity=0.344 Sum_probs=74.6
Q ss_pred cceeEEcccCccceeecCCCCCccceEEEEeecC-------CcceEEEEEecC-cceEEEcCeecCCCceEEeeCCCEEE
Q 000925 151 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENG-------GPSGALLEITGG-KGEVEVNGNVHPKDSQVVLRGGDELV 222 (1222)
Q Consensus 151 ~~~~t~G~~~~cd~~~~~~~~s~~~c~l~~~~~~-------g~~~~~le~~~~-~G~v~vNg~~~~k~~~~~L~~gdev~ 222 (1222)
...|+|||-..||+.+-+|+||..||-|.|--.+ .....++-+.|+ -|| ++|.++|.+.+-+.++-|+.+-
T Consensus 176 ~~~~~fgr~~~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt-~~NK~rvppk~yir~~Vg~v~~ 254 (793)
T KOG1881|consen 176 AAACLFGRLGGCDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGT-FLNKDRVPPKVYIRDRVGHVAR 254 (793)
T ss_pred ceeEEecccCCCccccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccc-eeccccCCCcchhhhhHHHHHH
Confidence 4789999999999999999999999999875311 222456666655 499 6999999999999999999999
Q ss_pred EccCCCeeEEeeecCcccC
Q 000925 223 FSPSGKHSYIFQQLSDDTL 241 (1222)
Q Consensus 223 f~~~~~~ayif~~l~~~~~ 241 (1222)
|+-+.+ .||||+.-.+..
T Consensus 255 fggsTr-l~i~Qgp~eD~E 272 (793)
T KOG1881|consen 255 FGGSTR-LYIFQGPEEDEE 272 (793)
T ss_pred hcCceE-EEEeeCCCcCCC
Confidence 998887 999999876666
No 310
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.20 E-value=0.0035 Score=70.62 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=28.5
Q ss_pred cccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhc
Q 000925 483 KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 518 (1222)
Q Consensus 483 k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f 518 (1222)
+.+....+....|||.|||| ..+++|||++|+++
T Consensus 33 ~~g~~~~~~~~~vll~GppG--tGKTtlA~~ia~~l 66 (261)
T TIGR02881 33 EEGLKTSKQVLHMIFKGNPG--TGKTTVARILGKLF 66 (261)
T ss_pred HcCCCCCCCcceEEEEcCCC--CCHHHHHHHHHHHH
Confidence 34445566667899999999 89999999999987
No 311
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.20 E-value=0.00084 Score=74.04 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=42.6
Q ss_pred CCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccc--cccc--------cccchHHHHHHHHHHHHh--cCCcEEE
Q 000925 952 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS--ITSK--------WFGEGEKYVKAVFSLASK--IAPSVVF 1019 (1222)
Q Consensus 952 ~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~--L~s~--------~~G~se~~I~~lF~~A~k--~~PsILf 1019 (1222)
.+-+..+||||+||+|||++|+.++. ...++..+... +.+. .....-..+.+.+..+.. ....+|+
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVV 86 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIV 86 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEE
Confidence 34345699999999999999999862 23334443321 1100 001111223333333332 3467999
Q ss_pred Eccchhhhc
Q 000925 1020 VDEVDSMLG 1028 (1222)
Q Consensus 1020 IDEID~L~~ 1028 (1222)
||+|+.|..
T Consensus 87 IDsI~~l~~ 95 (220)
T TIGR01618 87 IDNISALQN 95 (220)
T ss_pred EecHHHHHH
Confidence 999998763
No 312
>PHA00729 NTP-binding motif containing protein
Probab=97.18 E-value=0.00062 Score=75.15 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=24.0
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGAN 982 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~ 982 (1222)
..|+|+|+||||||+||.+|++.++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 369999999999999999999987633
No 313
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.17 E-value=0.0074 Score=67.36 Aligned_cols=174 Identities=20% Similarity=0.210 Sum_probs=101.4
Q ss_pred cceEECCCCChHHHHHHHHHHHhC---CcEEEEeccccc-----cccc----cc--------hHHHHHHHHHHHHhc-CC
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSIT-----SKWF----GE--------GEKYVKAVFSLASKI-AP 1015 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg---~~fi~v~~s~L~-----s~~~----G~--------se~~I~~lF~~A~k~-~P 1015 (1222)
-+.++|+-|+|||+++++++..++ ...+.++...+. ..++ .. .++.-+.+.....+. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 479999999999999997776663 222344432211 1111 11 122223344444443 45
Q ss_pred cEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCC-c---HHHHhcccccccCCCCC
Q 000925 1016 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL-D---EAVVRRLPRRLMVNLPD 1091 (1222)
Q Consensus 1016 sILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L-d---~aLlrRF~~~I~I~lPd 1091 (1222)
-++++||.+.+. ...-+.++.+.+ .-.+.. ..-.+++||=..-...+ - ..+..|+..+|.+++.+
T Consensus 133 v~l~vdEah~L~-----~~~le~Lrll~n----l~~~~~--~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLN-----DSALEALRLLTN----LEEDSS--KLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhC-----hhHHHHHHHHHh----hccccc--CceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 899999999883 222333332221 111111 11335555543211111 1 23344887668888888
Q ss_pred HHHHHHHHHHHHhhc----ccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhH
Q 000925 1092 APNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1142 (1222)
Q Consensus 1092 ~eeR~eILk~lL~k~----~l~sdidl~~LA~~t~GySg~DL~~L~~~Aa~~air 1142 (1222)
.++-..+++..++.- .+.++..+..++..+.| .+.-+.++|..|...++.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 888889999988873 44466667888888888 577788888887765544
No 314
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.16 E-value=0.0005 Score=80.43 Aligned_cols=76 Identities=29% Similarity=0.434 Sum_probs=64.7
Q ss_pred ecceeEEcccCccceeecCCCC--CccceEEEEeecCCcceEEEEEecCcceEEEcCeecCCCce-EEeeCCCEEEEccC
Q 000925 150 TGAVFTVGHNRQCDLYLKDPSI--SKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQ-VVLRGGDELVFSPS 226 (1222)
Q Consensus 150 ~~~~~t~G~~~~cd~~~~~~~~--s~~~c~l~~~~~~g~~~~~le~~~~~G~v~vNg~~~~k~~~-~~L~~gdev~f~~~ 226 (1222)
.....+|||+..||-.+.|+.- |.-||+|.+. +|. ++|=|+|+||+ +|||..+.-|.- +.|+.||||-++
T Consensus 24 ~~~~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~--dg~--f~L~DtS~g~l-~VNgs~~~~g~~~~RLqqGd~i~iG-- 96 (430)
T COG3456 24 DRGGGVIGRSPDCDWQIDDPERFVSKQHCTISYR--DGG--FCLTDTSNGGL-LVNGSDLPLGEGSARLQQGDEILIG-- 96 (430)
T ss_pred hcCCcccccCCCCCccccCcccccchhheEEEec--CCe--EEEEecCCCce-eecccccCCCCCccccccCCEEeec--
Confidence 3567899999999999999875 9999999986 555 88999998888 699999998888 999999999774
Q ss_pred CCeeEEeee
Q 000925 227 GKHSYIFQQ 235 (1222)
Q Consensus 227 ~~~ayif~~ 235 (1222)
-|||.-
T Consensus 97 ---~y~i~V 102 (430)
T COG3456 97 ---RYIIRV 102 (430)
T ss_pred ---cEEEEE
Confidence 367763
No 315
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.12 E-value=0.00086 Score=86.33 Aligned_cols=162 Identities=24% Similarity=0.286 Sum_probs=101.7
Q ss_pred ceEECCCCChHHHHHHHHHHHhCCcEEEEecccccccccc-----c--hHHHHHHHHH---H--HHhcCCcEEEEccchh
Q 000925 958 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG-----E--GEKYVKAVFS---L--ASKIAPSVVFVDEVDS 1025 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G-----~--se~~I~~lF~---~--A~k~~PsILfIDEID~ 1025 (1222)
+|++||||.|||+.+.++|.++|+.++.+|.++..+++.. . ....+...|. . .....-.||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 6999999999999999999999999999998875544221 1 1123333330 0 0011123999999999
Q ss_pred hhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000925 1026 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1105 (1222)
Q Consensus 1026 L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eILk~lL~k 1105 (1222)
+++ . . +..+..+..... ...+-+|+++|.........+.|....++|..|+...+..-+..++..
T Consensus 440 ~~~-~-d-------Rg~v~~l~~l~~------ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 440 MFG-E-D-------RGGVSKLSSLCK------KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred ccc-h-h-------hhhHHHHHHHHH------hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcc
Confidence 864 1 1 112222222211 133457777777666555444454455999999999888777777766
Q ss_pred cccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000925 1106 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1138 (1222)
Q Consensus 1106 ~~l~-sdidl~~LA~~t~GySg~DL~~L~~~Aa~ 1138 (1222)
+.+. .+..++.+...+ ++||++.+..-..
T Consensus 505 e~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~ 534 (871)
T KOG1968|consen 505 EGIKISDDVLEEISKLS----GGDIRQIIMQLQF 534 (871)
T ss_pred cceecCcHHHHHHHHhc----ccCHHHHHHHHhh
Confidence 4433 455577777766 5566666555433
No 316
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.11 E-value=0.0071 Score=68.76 Aligned_cols=130 Identities=16% Similarity=0.229 Sum_probs=71.8
Q ss_pred ccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh-----CCcEEEE-----eccc-
Q 000925 922 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINI-----SMSS- 990 (1222)
Q Consensus 922 I~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v-----~~s~- 990 (1222)
+.|+--+++.+...+...+..+ . .+.|--+=|||++||||.+.++.||+.+ ..+++.. +++.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~------~-p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANP------N-PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCC------C-CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 6677777777766665433221 1 2223446789999999999999999887 2333321 1111
Q ss_pred -cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCC
Q 000925 991 -ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1069 (1222)
Q Consensus 991 -L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~ 1069 (1222)
-...| .++....+-.-+...+.+|+++||+|.| .+ .+-..+.-|+.........+..+.++|.-+|.
T Consensus 157 ~~ie~Y---k~eL~~~v~~~v~~C~rslFIFDE~DKm-----p~----gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~ 224 (344)
T KOG2170|consen 157 SKIEDY---KEELKNRVRGTVQACQRSLFIFDEVDKL-----PP----GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNA 224 (344)
T ss_pred HHHHHH---HHHHHHHHHHHHHhcCCceEEechhhhc-----CH----hHHHHHhhhhccccccccccccceEEEEEcCC
Confidence 11111 1223334444555667799999999998 21 22233333333222222223456677777764
Q ss_pred C
Q 000925 1070 P 1070 (1222)
Q Consensus 1070 p 1070 (1222)
-
T Consensus 225 g 225 (344)
T KOG2170|consen 225 G 225 (344)
T ss_pred c
Confidence 3
No 317
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0028 Score=81.31 Aligned_cols=139 Identities=22% Similarity=0.332 Sum_probs=97.7
Q ss_pred ccceEECCCCChHHHHHHHHHHHh----------CCcEEEEecccccc--ccccchHHHHHHHHHHHHhc-CCcEEEEcc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDE 1022 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el----------g~~fi~v~~s~L~s--~~~G~se~~I~~lF~~A~k~-~PsILfIDE 1022 (1222)
++-+|.|.||+|||.++.-+|+.. +..++.++...+.. ++-|+.+..++.+..++... ..-||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 578999999999999999999876 34566777664433 45677888999999988854 456899999
Q ss_pred chhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCC-----CCCCcHHHHhcccccccCCCCCHHHHHH
Q 000925 1023 VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREK 1097 (1222)
Q Consensus 1023 ID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~-----p~~Ld~aLlrRF~~~I~I~lPd~eeR~e 1097 (1222)
++-+.+...+.+ .....+.|...+ .++.+.+|+||.. ...-+|++-+||+ .+.++.|+.++-..
T Consensus 289 lh~lvg~g~~~~----~~d~~nlLkp~L------~rg~l~~IGatT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYG----AIDAANLLKPLL------ARGGLWCIGATTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcch----HHHHHHhhHHHH------hcCCeEEEecccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhh
Confidence 999876654422 112222222222 1244899998852 2355789999995 67788999887777
Q ss_pred HHHHHHhh
Q 000925 1098 IIRVILAK 1105 (1222)
Q Consensus 1098 ILk~lL~k 1105 (1222)
||..+-..
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 77766544
No 318
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.07 E-value=0.00058 Score=73.54 Aligned_cols=121 Identities=16% Similarity=0.213 Sum_probs=56.8
Q ss_pred ceEECCCCChHHHHHHHH-HHHh---CCcEEEEeccccccccccc----hHH-------------HHHHHHHHHHhcCCc
Q 000925 958 ILLFGPPGTGKTMLAKAV-ATEA---GANFINISMSSITSKWFGE----GEK-------------YVKAVFSLASKIAPS 1016 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAI-A~el---g~~fi~v~~s~L~s~~~G~----se~-------------~I~~lF~~A~k~~Ps 1016 (1222)
.|++|.||+|||+.|-.. .... |.+++. +...|.-..+.. .-. ...........-..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999987655 4433 666554 443222111111 000 001111111111468
Q ss_pred EEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCC
Q 000925 1017 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVN 1088 (1222)
Q Consensus 1017 ILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~ 1088 (1222)
||+|||++.+++.+.... ......+ +++... ....+-||.+|-.+..++..+++..+..+.+.
T Consensus 82 liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~h------Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQH------RHYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HGGGGC------CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEEEECChhhcCCCcccc--ccchHHH-HHHHHh------CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 999999999998775421 1112233 233222 23567888889999999999988665555444
No 319
>PF14516 AAA_35: AAA-like domain
Probab=97.05 E-value=0.016 Score=67.86 Aligned_cols=164 Identities=14% Similarity=0.158 Sum_probs=86.2
Q ss_pred CCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-------------------------------h
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-------------------------------G 999 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~G~-------------------------------s 999 (1222)
|..-+.|.||..+|||+|...+.+.+ |...+.+++..+....+.. .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 44568999999999999999887665 7788888876543211111 1
Q ss_pred HHHHHHHHHHH---HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHH
Q 000925 1000 EKYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEA 1076 (1222)
Q Consensus 1000 e~~I~~lF~~A---~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~a 1076 (1222)
.......|+.. .-.+|-||+|||||.++..... ..+ ...++..+...-... ....++.+|.+......+...
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~--~~d-F~~~LR~~~~~~~~~--~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQI--ADD-FFGLLRSWYEQRKNN--PIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcch--HHH-HHHHHHHHHHhcccC--cccceEEEEEecCcccccccC
Confidence 11222233321 2236789999999999742210 111 112222222211111 011334444333222112111
Q ss_pred H-Hhcc--cccccCCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCc
Q 000925 1077 V-VRRL--PRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYS 1125 (1222)
Q Consensus 1077 L-lrRF--~~~I~I~lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GyS 1125 (1222)
. .+-| ...+.++.-+.++-..+++.+-.. . ....++.|-..+.|..
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-SQEQLEQLMDWTGGHP 233 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-CHHHHHHHHHHHCCCH
Confidence 1 1123 334666666788877777766322 2 2333888888888864
No 320
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.05 E-value=0.00045 Score=67.76 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=28.2
Q ss_pred ceEECCCCChHHHHHHHHHHHhCCcEEEEec
Q 000925 958 ILLFGPPGTGKTMLAKAVATEAGANFINISM 988 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~elg~~fi~v~~ 988 (1222)
|+|.|+||+||||+|+.||..+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999998877663
No 321
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.04 E-value=0.0024 Score=75.68 Aligned_cols=97 Identities=24% Similarity=0.412 Sum_probs=61.4
Q ss_pred CCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccc--------chHHHHHHHHHHHHhcCCc
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG--------EGEKYVKAVFSLASKIAPS 1016 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~------~~G--------~se~~I~~lF~~A~k~~Ps 1016 (1222)
+..-+||+|+||+|||+|+..+|... +.++++++..+-... .++ ..+..+..++..+....|.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~ 160 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPD 160 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCc
Confidence 33458999999999999999998765 456777765431110 011 1122355667777778999
Q ss_pred EEEEccchhhhcCCC--CCchHHHHHHHHHhHhhhc
Q 000925 1017 VVFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVNW 1050 (1222)
Q Consensus 1017 ILfIDEID~L~~~r~--~~~~~e~l~~il~~Ll~~l 1050 (1222)
+|+||+|..++.... .++.....+.++..|....
T Consensus 161 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~la 196 (372)
T cd01121 161 LVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFA 196 (372)
T ss_pred EEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHH
Confidence 999999999864332 1233344555555554443
No 322
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.04 E-value=0.0065 Score=70.68 Aligned_cols=60 Identities=25% Similarity=0.281 Sum_probs=42.2
Q ss_pred ccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEE
Q 000925 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1222)
Q Consensus 452 sfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~ 525 (1222)
+|++|-.- ++.+..|..+.-..... ....+.+||+||+| ..+..||+++|+++++++...
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG--~GKT~la~~ia~~l~~~~~~~ 82 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKR----------GEALDHVLLYGPPG--LGKTTLANIIANEMGVNIRIT 82 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCC--ccHHHHHHHHHHHhCCCeEEE
Confidence 68887776 77776665444322111 12345799999999 999999999999998765443
No 323
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.03 E-value=0.0043 Score=83.64 Aligned_cols=52 Identities=23% Similarity=0.449 Sum_probs=40.7
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCC
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA 981 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~ 981 (1222)
.+++++|++...++|...+... ....+-|-|+|++|+|||+||+++++.+..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 5678999999999988876421 112345899999999999999999888743
No 324
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.98 E-value=0.0029 Score=76.85 Aligned_cols=96 Identities=26% Similarity=0.433 Sum_probs=61.4
Q ss_pred CCccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccccccc------cc--------chHHHHHHHHHHHHhcCCc
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FG--------EGEKYVKAVFSLASKIAPS 1016 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~------~G--------~se~~I~~lF~~A~k~~Ps 1016 (1222)
+..-+||+|+||+|||+|+..+|... +.++++++..+-.... ++ ..+..+..++....+..|.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~ 158 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPD 158 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCC
Confidence 33458999999999999999998765 6677887765421110 11 0122355666777778899
Q ss_pred EEEEccchhhhcCCCC--CchHHHHHHHHHhHhhh
Q 000925 1017 VVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVN 1049 (1222)
Q Consensus 1017 ILfIDEID~L~~~r~~--~~~~e~l~~il~~Ll~~ 1049 (1222)
+|+||+|..++..... ++.....+.++..|...
T Consensus 159 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ 193 (446)
T PRK11823 159 LVVIDSIQTMYSPELESAPGSVSQVRECAAELMRL 193 (446)
T ss_pred EEEEechhhhccccccCCCCCHHHHHHHHHHHHHH
Confidence 9999999988643211 23333445555555444
No 325
>PRK08118 topology modulation protein; Reviewed
Probab=96.96 E-value=0.0013 Score=69.34 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.4
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEec
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 988 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~ 988 (1222)
..|+|+||||+||||||+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 368999999999999999999999999998874
No 326
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.92 E-value=0.024 Score=63.39 Aligned_cols=125 Identities=18% Similarity=0.320 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcchhhhhccChhhHHHHHHHHhcC----CCCEEEEEeccCCCCccccCCCCCceeecc
Q 000925 660 AINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENL----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKF 735 (1222)
Q Consensus 660 ~~~~l~ev~~~esk~~P~Ilfi~die~~l~~~~~~~~~l~~~L~~l----~g~vvvIgS~~~~d~~k~k~~~~~~~l~~~ 735 (1222)
-|..|++++.. +....|||+||.. |..+...|..||+.||.= |.||+|+++-|+=---+|+ +
T Consensus 93 ~l~~l~~~l~~--~~~kFIlf~DDLs--Fe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~----------~ 158 (249)
T PF05673_consen 93 DLPELLDLLRD--RPYKFILFCDDLS--FEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPES----------F 158 (249)
T ss_pred cHHHHHHHHhc--CCCCEEEEecCCC--CCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchh----------h
Confidence 35566777763 4589999999954 788899999999999854 6699999998862111111 1
Q ss_pred CcchhhhccccCCCCccccccccccchHHHH--HHhhhCCCeEEecCCchhHHHH---HHHHHHhhcchhhhccchhhHH
Q 000925 736 GSNQTALLDLAFPDNFSRLHDRSKETPKALK--QISRLFPNKVTIQLPQDEALLS---DWKQQLERDVETLKGQSNIISI 810 (1222)
Q Consensus 736 ~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~--~l~~lf~~~i~i~~P~DeALlR---Rferq~e~~Lpd~~gR~~Il~I 810 (1222)
..+.+ ..++.-...-...| +|.-+||..|.+.+|+.+.-|. -|-.+..++++....+...++.
T Consensus 159 ~d~~~------------~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~w 226 (249)
T PF05673_consen 159 SDRED------------IQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQW 226 (249)
T ss_pred hhccC------------CCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 11110 00011111112222 4888999999999998887766 3334445555544444444444
No 327
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.90 E-value=0.00048 Score=72.86 Aligned_cols=23 Identities=52% Similarity=0.808 Sum_probs=20.3
Q ss_pred cceEECCCCChHHHHHHHHHHHh
Q 000925 957 GILLFGPPGTGKTMLAKAVATEA 979 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~el 979 (1222)
+|+|+|+||+|||||++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999998887
No 328
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.82 E-value=0.0038 Score=68.43 Aligned_cols=34 Identities=38% Similarity=0.650 Sum_probs=28.7
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 989 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s 989 (1222)
.-++|+|+||+|||+||..+|.+. +..++.+++.
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 448999999999999999998755 6778888776
No 329
>PRK07261 topology modulation protein; Provisional
Probab=96.82 E-value=0.0023 Score=67.67 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=29.6
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 989 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s 989 (1222)
.|+|+|+||+|||+||+.|+..++.+++.++.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 489999999999999999999999998887643
No 330
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.79 E-value=0.0025 Score=66.62 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=36.9
Q ss_pred ccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCc---EEEEecccc
Q 000925 922 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 991 (1222)
Q Consensus 922 I~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~---fi~v~~s~L 991 (1222)
++|.++..+.|...+.. .. ...++.++|+|++|+|||+|++++...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~----------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQ----------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TS----------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HH----------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 56788888888886631 11 2234679999999999999999998776322 777776554
No 331
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.75 E-value=0.028 Score=68.15 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=28.6
Q ss_pred CCccceEECCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 989 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s 989 (1222)
+|..++|+|++|+|||+++..+|..+ |..+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 45679999999999999999998877 5556555553
No 332
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.73 E-value=0.0013 Score=68.15 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=30.1
Q ss_pred CCccceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
++..|+|+|+||+|||++|+++|+.++++++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3467999999999999999999999999888654
No 333
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.72 E-value=0.0048 Score=74.65 Aligned_cols=171 Identities=25% Similarity=0.313 Sum_probs=103.9
Q ss_pred cccCcHHHHHHHHHHHHccccChhhh-hcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcE---------EEEeccc
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELF-CKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---------INISMSS 990 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf-~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f---------i~v~~s~ 990 (1222)
.|.|.+-+|+.|.-++.-- -|.. ..+.-.+-.-+|||.|.|-+.|+-|.+.+.+..-..+ +-+..+.
T Consensus 302 SI~GH~~vKkAillLLlGG---vEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAV 378 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGG---VEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAV 378 (818)
T ss_pred ccccHHHHHHHHHHHHhcc---ceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEE
Confidence 4789999999987765421 1111 1111112223499999999999999999987652211 1111111
Q ss_pred cccccccchHHHHH-HHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhc--cCCcccCCCcEEEEEec
Q 000925 991 ITSKWFGEGEKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAAT 1067 (1222)
Q Consensus 991 L~s~~~G~se~~I~-~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~l--dgl~~k~~~~VlVIaTT 1067 (1222)
-... ..+|+.+. +...+|.+ +|+.|||+|.| +..+..++.+++.+-...+ .|+...-+.++-|||++
T Consensus 379 TtD~--eTGERRLEAGAMVLADR---GVVCIDEFDKM-----sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAA 448 (818)
T KOG0479|consen 379 TTDQ--ETGERRLEAGAMVLADR---GVVCIDEFDKM-----SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAA 448 (818)
T ss_pred eecc--ccchhhhhcCceEEccC---ceEEehhcccc-----cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeec
Confidence 1111 12333332 23344555 89999999998 4455666667776655554 45666667899999999
Q ss_pred CCCC-------------CCcHHHHhcccccccC-CCCCHHHHHHHHHHHHh
Q 000925 1068 NRPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILA 1104 (1222)
Q Consensus 1068 N~p~-------------~Ld~aLlrRF~~~I~I-~lPd~eeR~eILk~lL~ 1104 (1222)
|+.+ .|+..+++||+..+.+ +--+...-..|-.+.++
T Consensus 449 NPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLR 499 (818)
T KOG0479|consen 449 NPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLR 499 (818)
T ss_pred CccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHH
Confidence 9743 5778999999865433 33344444445555444
No 334
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.68 E-value=0.0058 Score=69.27 Aligned_cols=93 Identities=18% Similarity=0.291 Sum_probs=61.0
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhC---CcEEEEec-cccc
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSIT 992 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg---~~fi~v~~-s~L~ 992 (1222)
.++++++-.....+.|.+++.. +...++|.||+|+|||++++++..... ..++.+.- .++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4577787777777777665541 212489999999999999999977763 33454422 1211
Q ss_pred cc-----ccc-chHHHHHHHHHHHHhcCCcEEEEccch
Q 000925 993 SK-----WFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1024 (1222)
Q Consensus 993 s~-----~~G-~se~~I~~lF~~A~k~~PsILfIDEID 1024 (1222)
-. .+. ........+...+.+..|.+|+|+||.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 10 111 112245667777888999999999994
No 335
>PHA02624 large T antigen; Provisional
Probab=96.67 E-value=0.0014 Score=80.70 Aligned_cols=119 Identities=21% Similarity=0.281 Sum_probs=66.5
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCC-CCc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE-NPG 1034 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~-~~~ 1034 (1222)
+.+||+||||||||+|+.+|++.++...+.++++.-.+. |.+.--....+.+||++-.-..... -+.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCCc
Confidence 469999999999999999999999777788886652221 1111111125777887742211000 000
Q ss_pred hHHHHHHHHHhHhhhccCC-cc----cCCCc-----EEEEEecCCCCCCcHHHHhcccccccCCC
Q 000925 1035 EHEAMRKMKNEFMVNWDGL-RT----KDKER-----VLVLAATNRPFDLDEAVVRRLPRRLMVNL 1089 (1222)
Q Consensus 1035 ~~e~l~~il~~Ll~~ldgl-~~----k~~~~-----VlVIaTTN~p~~Ld~aLlrRF~~~I~I~l 1089 (1222)
++ .+. =+..|...+||- .. +...+ --+|.|||. ..++.++.-||..++.|..
T Consensus 500 G~-~~d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 GQ-GMN-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred cc-ccc-hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 00 000 012334445554 10 11111 124456665 5688888889988888764
No 336
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.66 E-value=0.0023 Score=78.70 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=47.2
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh-CCcEEEEec
Q 000925 918 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 988 (1222)
Q Consensus 918 tfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el-g~~fi~v~~ 988 (1222)
-|+|+.|++++++.|.+++..... ++.....-++|.||||+|||+||+.||+.+ .++++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~--------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ--------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH--------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 578999999999999988743221 112233468999999999999999999887 456666543
No 337
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.65 E-value=0.014 Score=66.75 Aligned_cols=61 Identities=23% Similarity=0.231 Sum_probs=40.2
Q ss_pred ccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEe
Q 000925 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1222)
Q Consensus 452 sfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D 526 (1222)
||++|=.. ++.+..|..+.-..... ....+-+||+||+| ..+.+||+++|++++.++..++
T Consensus 2 ~~~~~iG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~Gp~G--~GKT~la~~ia~~~~~~~~~~~ 62 (305)
T TIGR00635 2 LLAEFIGQ--EKVKEQLQLFIEAAKMR----------QEALDHLLLYGPPG--LGKTTLAHIIANEMGVNLKITS 62 (305)
T ss_pred CHHHHcCH--HHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCC--CCHHHHHHHHHHHhCCCEEEec
Confidence 45555444 66666665544322111 12335689999999 9999999999999887655443
No 338
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.63 E-value=0.0078 Score=70.00 Aligned_cols=74 Identities=26% Similarity=0.342 Sum_probs=50.4
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccccc----------------ccccchHHHHHHHHHHHHhcCCc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIAPS 1016 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s----------------~~~G~se~~I~~lF~~A~k~~Ps 1016 (1222)
.-++|+||||+|||+||..++.+. +..++.++...... ......++.+..+....+...+.
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~ 135 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVD 135 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCc
Confidence 448999999999999988876554 66777776543111 11122344454455555667889
Q ss_pred EEEEccchhhhcC
Q 000925 1017 VVFVDEVDSMLGR 1029 (1222)
Q Consensus 1017 ILfIDEID~L~~~ 1029 (1222)
+|+||-+..|.+.
T Consensus 136 lIVIDSv~al~~~ 148 (321)
T TIGR02012 136 IIVVDSVAALVPK 148 (321)
T ss_pred EEEEcchhhhccc
Confidence 9999999998754
No 339
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.63 E-value=0.012 Score=65.36 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=46.5
Q ss_pred CccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccc----ccc--c-----------------------cc--chH
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----TSK--W-----------------------FG--EGE 1000 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L----~s~--~-----------------------~G--~se 1000 (1222)
..-++|.|++|||||+|+..++... |...+.+...+- ... . .+ ..+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKR 103 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHHH
Confidence 3458999999999999986665543 556666654220 000 0 00 013
Q ss_pred HHHHHHHHHHHhcCCcEEEEccchhhh
Q 000925 1001 KYVKAVFSLASKIAPSVVFVDEVDSML 1027 (1222)
Q Consensus 1001 ~~I~~lF~~A~k~~PsILfIDEID~L~ 1027 (1222)
..+..+...+....|.+++||++-.++
T Consensus 104 ~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 104 KFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 345556666666678999999998764
No 340
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.63 E-value=0.024 Score=74.23 Aligned_cols=153 Identities=15% Similarity=0.199 Sum_probs=81.7
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccc---c------------cc---------------chHHHHHH
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK---W------------FG---------------EGEKYVKA 1005 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~---~------------~G---------------~se~~I~~ 1005 (1222)
+-++|+||+|.|||+++...+...+ ++..++...-.+. + .+ .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 3589999999999999999887776 6555544210000 0 00 00112233
Q ss_pred HHHHHHh-cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhccccc
Q 000925 1006 VFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 1084 (1222)
Q Consensus 1006 lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~ 1084 (1222)
++..... ..|-+|+|||++.+- .......+..++... ..++.+|.++.....+.-.-++.-+..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~--------~~~~~~~l~~l~~~~-------~~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT--------NPEIHEAMRFFLRHQ-------PENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC--------ChHHHHHHHHHHHhC-------CCCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 3333332 568899999999761 112233444444332 133444445543222321111111223
Q ss_pred ccCC----CCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcH
Q 000925 1085 LMVN----LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1126 (1222)
Q Consensus 1085 I~I~----lPd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg 1126 (1222)
+.+. ..+.++-.+++...+.. . .+..++..|...|+|+..
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~-~-~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSS-P-IEAAESSRLCDDVEGWAT 220 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCC-C-CCHHHHHHHHHHhCChHH
Confidence 4444 55778888887655432 1 245567888888888753
No 341
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.60 E-value=0.0048 Score=74.98 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=37.2
Q ss_pred cccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcC
Q 000925 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 519 (1222)
Q Consensus 449 ~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~ 519 (1222)
-..|||+|- ..+..+.++..|-.+ + .+-....+.++|+||+| .++..|++|+|++..
T Consensus 117 ~~~tfd~fv--~g~~n~~a~~~~~~~-------~---~~~~~~~~~l~l~G~~G--~GKThL~~ai~~~~~ 173 (450)
T PRK00149 117 PKYTFDNFV--VGKSNRLAHAAALAV-------A---ENPGKAYNPLFIYGGVG--LGKTHLLHAIGNYIL 173 (450)
T ss_pred CCCcccccc--cCCCcHHHHHHHHHH-------H---hCcCccCCeEEEECCCC--CCHHHHHHHHHHHHH
Confidence 345899984 345555544433321 1 11112335699999999 899999999999873
No 342
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.58 E-value=0.0038 Score=67.56 Aligned_cols=66 Identities=21% Similarity=0.358 Sum_probs=43.0
Q ss_pred ceEECCCCChHHHHHHHHHHHhC----CcEEEEecc-cccc---------ccccchHHHHHHHHHHHHhcCCcEEEEccc
Q 000925 958 ILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SITS---------KWFGEGEKYVKAVFSLASKIAPSVVFVDEV 1023 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~elg----~~fi~v~~s-~L~s---------~~~G~se~~I~~lF~~A~k~~PsILfIDEI 1023 (1222)
++|.||+|+|||+++++++..+. ..++.+..+ ++.. ..++.........+..+.+..|.+|++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 79999999999999999988774 233333221 1110 011222233555666777778999999998
No 343
>PRK04296 thymidine kinase; Provisional
Probab=96.50 E-value=0.017 Score=62.30 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=40.4
Q ss_pred ceEECCCCChHHHHHHHHHHHh---CCcEEEEecc----c----cccccccch-----HHHHHHHHHHH--HhcCCcEEE
Q 000925 958 ILLFGPPGTGKTMLAKAVATEA---GANFINISMS----S----ITSKWFGEG-----EKYVKAVFSLA--SKIAPSVVF 1019 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s----~----L~s~~~G~s-----e~~I~~lF~~A--~k~~PsILf 1019 (1222)
+|++||+|+|||+++..++..+ +..++.+... . +.+. +|.. -.....++..+ ......+|+
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 6899999999999998887766 5555555321 1 1111 1110 01123333333 234568999
Q ss_pred Eccchhh
Q 000925 1020 VDEVDSM 1026 (1222)
Q Consensus 1020 IDEID~L 1026 (1222)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999765
No 344
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.46 E-value=0.011 Score=69.02 Aligned_cols=74 Identities=27% Similarity=0.337 Sum_probs=50.1
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccc----------------ccccccchHHHHHHHHHHHHhcCCc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----------------TSKWFGEGEKYVKAVFSLASKIAPS 1016 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L----------------~s~~~G~se~~I~~lF~~A~k~~Ps 1016 (1222)
+-++|+||||+|||+||-.++.+. +...+.++...- .-......++.+..+-..++...+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 348999999999999999886544 667777776331 1111122344444444455667789
Q ss_pred EEEEccchhhhcC
Q 000925 1017 VVFVDEVDSMLGR 1029 (1222)
Q Consensus 1017 ILfIDEID~L~~~ 1029 (1222)
+|+||-+-.|++.
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999998753
No 345
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.43 E-value=0.0063 Score=65.88 Aligned_cols=32 Identities=44% Similarity=0.596 Sum_probs=24.4
Q ss_pred cceEECCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000925 957 GILLFGPPGTGKTMLAKAVATEA---GANFINISM 988 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~ 988 (1222)
-++|.|+||||||++++.++..+ +..++.+..
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 47889999999999999987655 666666654
No 346
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.41 E-value=0.016 Score=69.39 Aligned_cols=121 Identities=19% Similarity=0.222 Sum_probs=69.3
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchH
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1036 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~ 1036 (1222)
-++|+||.+||||++++.+.....-.++.++..++......- ......+..++......||||||+.+ ++-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v------~~W~ 110 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV------PDWE 110 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc------hhHH
Confidence 689999999999999988888875556666655544332211 12222333333334579999999876 1111
Q ss_pred HHHHHHHHhHhhhccCCcccCCCcEEEEEecCCC--CCCcHHHHhcccccccCCCCCHHHHHH
Q 000925 1037 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP--FDLDEAVVRRLPRRLMVNLPDAPNREK 1097 (1222)
Q Consensus 1037 e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p--~~Ld~aLlrRF~~~I~I~lPd~eeR~e 1097 (1222)
+.+..+ .+.. +.++++.+++... ..+.+.+..|. ..+.+.+.+..|...
T Consensus 111 ----~~lk~l---~d~~----~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 111 ----RALKYL---YDRG----NLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ----HHHHHH---Hccc----cceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 222222 2221 1135555444322 23345555675 567777778777754
No 347
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.40 E-value=0.0072 Score=72.30 Aligned_cols=172 Identities=23% Similarity=0.306 Sum_probs=94.3
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCC-CCCccceEECCCCChHHHHHHHHHHHhCCcEEEEe-c---ccccccc
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLT-KPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-M---SSITSKW 995 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~-~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~-~---s~L~s~~ 995 (1222)
.|.|.+++|+++.-++.---+ ..+ ..|+. +-.-+|||-|.|||.|+-|.+-+-+-.-.-++.-. + +-|....
T Consensus 332 SIfG~~DiKkAiaClLFgGsr--K~L-pDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV 408 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSR--KRL-PDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASV 408 (729)
T ss_pred hhcCchhHHHHHHHHhhcCcc--ccC-CCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeE
Confidence 478899999998776542111 000 11111 11234999999999999999988665533222210 0 0011000
Q ss_pred ccch---HHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHH--hHhhhccCCcccCCCcEEEEEecCC
Q 000925 996 FGEG---EKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN--EFMVNWDGLRTKDKERVLVLAATNR 1069 (1222)
Q Consensus 996 ~G~s---e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~--~Ll~~ldgl~~k~~~~VlVIaTTN~ 1069 (1222)
...+ +-++ .+...+|. .+|+.|||+|.+- ..+..+..+.+. ++-..-.|+.+.-+.+.-|+|++|+
T Consensus 409 ~RD~~tReFylEGGAMVLAD---gGVvCIDEFDKMr-----e~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANp 480 (729)
T KOG0481|consen 409 IRDPSTREFYLEGGAMVLAD---GGVVCIDEFDKMR-----EDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANP 480 (729)
T ss_pred EecCCcceEEEecceEEEec---CCEEEeehhhccC-----chhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCC
Confidence 0000 0000 00111233 3899999999982 223333333333 3333345666666788999999986
Q ss_pred CC-----------C--CcHHHHhcccccccCCCCCHHHH-HHHHHHHH
Q 000925 1070 PF-----------D--LDEAVVRRLPRRLMVNLPDAPNR-EKIIRVIL 1103 (1222)
Q Consensus 1070 p~-----------~--Ld~aLlrRF~~~I~I~lPd~eeR-~eILk~lL 1103 (1222)
+. . +-+.+++||+.++.+.--..++| ..|.++.+
T Consensus 481 vfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI 528 (729)
T KOG0481|consen 481 VFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVI 528 (729)
T ss_pred ccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhh
Confidence 42 3 34899999998888765544444 33444443
No 348
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.40 E-value=0.0051 Score=61.93 Aligned_cols=27 Identities=56% Similarity=0.913 Sum_probs=23.9
Q ss_pred ceEECCCCChHHHHHHHHHHHhCCcEE
Q 000925 958 ILLFGPPGTGKTMLAKAVATEAGANFI 984 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~elg~~fi 984 (1222)
|++.||||+|||++|+.++..++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 689999999999999999999994443
No 349
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.39 E-value=0.015 Score=61.64 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=46.5
Q ss_pred ceEECCCCChHHHHHHHHHHHhCCcEEEEecccccccc-----------------ccchHHHHHHHHHHHHhcCCcEEEE
Q 000925 958 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW-----------------FGEGEKYVKAVFSLASKIAPSVVFV 1020 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~-----------------~G~se~~I~~lF~~A~k~~PsILfI 1020 (1222)
+|+.|++|+|||++|..++...+.+++++....-.+.- ..+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 68999999999999999998877788777654322110 011112233333221 14679999
Q ss_pred ccchhhhcCC
Q 000925 1021 DEVDSMLGRR 1030 (1222)
Q Consensus 1021 DEID~L~~~r 1030 (1222)
|-+..|....
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999887544
No 350
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.39 E-value=0.013 Score=63.74 Aligned_cols=34 Identities=38% Similarity=0.616 Sum_probs=27.6
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 989 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s 989 (1222)
.-++|+|+||+|||+|+..+|.+. +.+++.++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 448999999999999999998765 5677777653
No 351
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.38 E-value=0.02 Score=60.88 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=46.1
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHH--------------------HHHHHHHHHHhcCCc
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--------------------YVKAVFSLASKIAPS 1016 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~se~--------------------~I~~lF~~A~k~~Ps 1016 (1222)
.+|+.|+||+|||++|..++..++.+++.+........ +..+ .+..++... ..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 48999999999999999999998877777665432111 1111 133333221 23457
Q ss_pred EEEEccchhhhcC
Q 000925 1017 VVFVDEVDSMLGR 1029 (1222)
Q Consensus 1017 ILfIDEID~L~~~ 1029 (1222)
+++||-+..|...
T Consensus 79 ~VlID~Lt~~~~n 91 (170)
T PRK05800 79 CVLVDCLTTWVTN 91 (170)
T ss_pred EEEehhHHHHHHH
Confidence 9999999998643
No 352
>PRK13695 putative NTPase; Provisional
Probab=96.37 E-value=0.013 Score=61.78 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.6
Q ss_pred cceEECCCCChHHHHHHHHHHHh
Q 000925 957 GILLFGPPGTGKTMLAKAVATEA 979 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~el 979 (1222)
.++|.|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987765
No 353
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0025 Score=72.65 Aligned_cols=68 Identities=32% Similarity=0.384 Sum_probs=54.6
Q ss_pred hhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEecCCC
Q 000925 461 SDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (1222)
Q Consensus 461 se~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~~~~ 530 (1222)
-|..|.+|-=|+|-|-|.-.+...-.+..=.---|||-||.| -.++.||+-||+.+++++-|-|.+.|
T Consensus 66 Qe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTG--sGKTlLAqTLAk~LnVPFaiADATtL 133 (408)
T COG1219 66 QEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTG--SGKTLLAQTLAKILNVPFAIADATTL 133 (408)
T ss_pred chhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCC--CcHHHHHHHHHHHhCCCeeeccccch
Confidence 489999999999999877443222222333334699999999 69999999999999999999999988
No 354
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.33 E-value=0.0079 Score=71.33 Aligned_cols=71 Identities=21% Similarity=0.345 Sum_probs=43.6
Q ss_pred cceEECCCCChHHHHHHHHHHHhCC-----c-EEEEeccc---------------cccccccchHHHHH---HHHHHHHh
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGA-----N-FINISMSS---------------ITSKWFGEGEKYVK---AVFSLASK 1012 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~-----~-fi~v~~s~---------------L~s~~~G~se~~I~---~lF~~A~k 1012 (1222)
..||+||+|+|||+|++.|++.... . ++.+.... +.+.+-...+..++ .+++.|+.
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~ 250 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKR 250 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999987732 2 22222111 12222222333333 34444443
Q ss_pred ----cCCcEEEEccchhhh
Q 000925 1013 ----IAPSVVFVDEVDSML 1027 (1222)
Q Consensus 1013 ----~~PsILfIDEID~L~ 1027 (1222)
....+||||||+++.
T Consensus 251 ~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 251 LVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHcCCCEEEEEEChHHHH
Confidence 245799999999986
No 355
>PRK03839 putative kinase; Provisional
Probab=96.33 E-value=0.0029 Score=66.93 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=28.4
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
.|+|.|+||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999987764
No 356
>PRK13947 shikimate kinase; Provisional
Probab=96.32 E-value=0.0031 Score=65.86 Aligned_cols=31 Identities=45% Similarity=0.602 Sum_probs=28.9
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
+|+|.|+||+|||++|+.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997765
No 357
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.25 E-value=0.017 Score=70.43 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=51.1
Q ss_pred CCccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------cccc--------hHHHHHHHHHHHHhcCCc
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE--------GEKYVKAVFSLASKIAPS 1016 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~------~~G~--------se~~I~~lF~~A~k~~Ps 1016 (1222)
+..-+||.|+||+|||+|+..++... +.++++++..+-... -++. .+..+..+...+.+..|.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~ 172 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQ 172 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCc
Confidence 33458999999999999999997765 456777776432111 0110 112345566666778899
Q ss_pred EEEEccchhhhc
Q 000925 1017 VVFVDEVDSMLG 1028 (1222)
Q Consensus 1017 ILfIDEID~L~~ 1028 (1222)
+|+||.|..+..
T Consensus 173 ~vVIDSIq~l~~ 184 (454)
T TIGR00416 173 ACVIDSIQTLYS 184 (454)
T ss_pred EEEEecchhhcc
Confidence 999999998864
No 358
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.22 E-value=0.004 Score=63.49 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=28.3
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
.|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3799999999999999999999999988665
No 359
>PRK14974 cell division protein FtsY; Provisional
Probab=96.22 E-value=0.027 Score=66.05 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=26.6
Q ss_pred CccceEECCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 988 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~ 988 (1222)
+.-++|.|++|+|||+++..+|..+ +..+..+++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4569999999999999999888776 555555544
No 360
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.20 E-value=0.033 Score=62.81 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.1
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCC
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGA 981 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~ 981 (1222)
..++|+||+|+|||+|++.|++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 45999999999999999999988743
No 361
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.19 E-value=0.022 Score=61.88 Aligned_cols=69 Identities=26% Similarity=0.441 Sum_probs=40.9
Q ss_pred ccceEECCCCChHHHHHHHHHHH-----hCCcEE-------------EEeccc-cccc--cccchHHHHHHHHHHHHhcC
Q 000925 956 KGILLFGPPGTGKTMLAKAVATE-----AGANFI-------------NISMSS-ITSK--WFGEGEKYVKAVFSLASKIA 1014 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~e-----lg~~fi-------------~v~~s~-L~s~--~~G~se~~I~~lF~~A~k~~ 1014 (1222)
+-++|+||+|+|||+|.+.|+.. .|.++- .+...+ +... .+......+..++..+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 45899999999999999999743 344321 111111 1000 01111134556666665457
Q ss_pred CcEEEEccch
Q 000925 1015 PSVVFVDEVD 1024 (1222)
Q Consensus 1015 PsILfIDEID 1024 (1222)
|.+|++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 8999999974
No 362
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.18 E-value=0.04 Score=60.88 Aligned_cols=73 Identities=21% Similarity=0.350 Sum_probs=46.7
Q ss_pred CccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccccc--------------ccc-------------------cc
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS--------------KWF-------------------GE 998 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s--------------~~~-------------------G~ 998 (1222)
..-++|+|+||+|||+|+..++.+. +..++.++..+-.. .++ ..
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~ 104 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNSTL 104 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcch
Confidence 3558999999999999999997653 56666665432100 000 00
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEccchhhh
Q 000925 999 GEKYVKAVFSLASKIAPSVVFVDEVDSML 1027 (1222)
Q Consensus 999 se~~I~~lF~~A~k~~PsILfIDEID~L~ 1027 (1222)
.+..+..+........|.+|+||++..+.
T Consensus 105 ~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 105 ANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 12333444445555688999999998764
No 363
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.0036 Score=64.58 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=29.6
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
.+||++|-||||||+|+..||...+++++.+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 48999999999999999999999999988775
No 364
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.17 E-value=0.029 Score=62.33 Aligned_cols=39 Identities=28% Similarity=0.494 Sum_probs=27.8
Q ss_pred CCCCCCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000925 949 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 988 (1222)
Q Consensus 949 ~~l~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~ 988 (1222)
+|+ .+...+||+||||+|||+||..++.+. |-+.+.++.
T Consensus 16 GG~-~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCC-cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 453 344669999999999999998876542 555555543
No 365
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.14 E-value=0.024 Score=62.48 Aligned_cols=71 Identities=27% Similarity=0.376 Sum_probs=46.9
Q ss_pred ccceEECCCCChHHHHHHHHHHHh--C------CcEEEEec-cccccccccc-------------hHHHHHHHHHHHHhc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA--G------ANFINISM-SSITSKWFGE-------------GEKYVKAVFSLASKI 1013 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el--g------~~fi~v~~-s~L~s~~~G~-------------se~~I~~lF~~A~k~ 1013 (1222)
.+.||.||||+|||+|.+-||.-+ + ..+..++- +++.+...|. ..-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 358999999999999999999876 2 22334443 2232222121 111234466677889
Q ss_pred CCcEEEEccchhh
Q 000925 1014 APSVVFVDEVDSM 1026 (1222)
Q Consensus 1014 ~PsILfIDEID~L 1026 (1222)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999754
No 366
>PRK00625 shikimate kinase; Provisional
Probab=96.14 E-value=0.0042 Score=66.13 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=29.2
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
.|+|+|.||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998876
No 367
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.14 E-value=0.03 Score=61.45 Aligned_cols=92 Identities=21% Similarity=0.374 Sum_probs=55.4
Q ss_pred CccceEECCCCChHHHHHHHHHHHh----CCcEEEEeccccc----c-------------------------cc----cc
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSIT----S-------------------------KW----FG 997 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~el----g~~fi~v~~s~L~----s-------------------------~~----~G 997 (1222)
..-+||.||||+|||.|+..++.+. |-+++.++..+-. . .. ..
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~~ 98 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSPN 98 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TSC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccccccc
Confidence 3559999999999999999876443 6777776653200 0 00 01
Q ss_pred chHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhc
Q 000925 998 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1050 (1222)
Q Consensus 998 ~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~l 1050 (1222)
..+..+..+........+.+++||.+..+. ...+ ....+..+..+...+
T Consensus 99 ~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~~---~~~~r~~l~~l~~~l 147 (226)
T PF06745_consen 99 DLEELLSKIREAIEELKPDRVVIDSLSALL-LYDD---PEELRRFLRALIKFL 147 (226)
T ss_dssp CHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSSS---GGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcCC---HHHHHHHHHHHHHHH
Confidence 223445566666677788999999999983 2222 122344455555544
No 368
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.012 Score=69.70 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.4
Q ss_pred ccceEECCCCChHHHHHHHHHHHh
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA 979 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el 979 (1222)
..++|.||+|+|||+++..||..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998764
No 369
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.13 E-value=0.0069 Score=68.31 Aligned_cols=96 Identities=21% Similarity=0.373 Sum_probs=59.3
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhC---CcEEEEec-cccc
Q 000925 917 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSIT 992 (1222)
Q Consensus 917 vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg---~~fi~v~~-s~L~ 992 (1222)
.++++++-.....+.+.+++...++ ....+|+.|++|+|||+++++++.+.. ..++.+.- .++.
T Consensus 101 ~sle~l~~~~~~~~~~~~~l~~~v~------------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 101 FSLEDLGESGSIPEEIAEFLRSAVR------------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp -CHCCCCHTHHCHHHHHHHHHHCHH------------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccHhhccCchhhHHHHHHHHhhccc------------cceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 4666776666666666666553111 125699999999999999999998873 34554442 1211
Q ss_pred cc------ccc-chHHHHHHHHHHHHhcCCcEEEEccch
Q 000925 993 SK------WFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1024 (1222)
Q Consensus 993 s~------~~G-~se~~I~~lF~~A~k~~PsILfIDEID 1024 (1222)
-. ... ........++..+.+..|.+|+|.||-
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 10 001 123356677888888999999999995
No 370
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.12 E-value=0.02 Score=75.59 Aligned_cols=134 Identities=20% Similarity=0.268 Sum_probs=86.1
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEEeccccc--cccccc----h---HHHHHHHHHHHHhcCCcEEEEccchhhh
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWFGE----G---EKYVKAVFSLASKIAPSVVFVDEVDSML 1027 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~--s~~~G~----s---e~~I~~lF~~A~k~~PsILfIDEID~L~ 1027 (1222)
.+||.||..+|||.++..+|.+.|..|++++-.+.. ..|+|. . -..-.+++..|.+.. --|++||+..-
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 499999999999999999999999999999864421 123321 1 112234555555533 57889999632
Q ss_pred cCCCCCchHHHHHHHHHhHhhhccCCc-------ccCCCcEEEEEecCCCC------CCcHHHHhcccccccCCCCCHHH
Q 000925 1028 GRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPN 1094 (1222)
Q Consensus 1028 ~~r~~~~~~e~l~~il~~Ll~~ldgl~-------~k~~~~VlVIaTTN~p~------~Ld~aLlrRF~~~I~I~lPd~ee 1094 (1222)
....- .+++.|+..-+.+. ..+...+++.||-|+|. .|..+|+.|| ..++|.--..++
T Consensus 968 ----pTDVL----EaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipedE 1038 (4600)
T COG5271 968 ----PTDVL----EALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDE 1038 (4600)
T ss_pred ----cHHHH----HHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHHH
Confidence 11122 33344443322221 12456788888889874 5778999999 456666555666
Q ss_pred HHHHHHH
Q 000925 1095 REKIIRV 1101 (1222)
Q Consensus 1095 R~eILk~ 1101 (1222)
...|++.
T Consensus 1039 le~ILh~ 1045 (4600)
T COG5271 1039 LEEILHG 1045 (4600)
T ss_pred HHHHHhc
Confidence 6777654
No 371
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.12 E-value=0.052 Score=60.85 Aligned_cols=131 Identities=16% Similarity=0.256 Sum_probs=73.0
Q ss_pred CccceEECCCCChHHHHHHHHHHHhCC--cEEEEecccccccc--------c-c-----chHHHH-------HHHHHHHH
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITSKW--------F-G-----EGEKYV-------KAVFSLAS 1011 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~elg~--~fi~v~~s~L~s~~--------~-G-----~se~~I-------~~lF~~A~ 1011 (1222)
+-.+++.|++|||||+|+..|...+.. ..+.+-++.....+ + . +.+..+ .+......
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 357999999999999999999877632 33333332211111 0 0 001111 11111111
Q ss_pred h---cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCC
Q 000925 1012 K---IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVN 1088 (1222)
Q Consensus 1012 k---~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~ 1088 (1222)
. ..+.+|+||++..- ..-.+.+..+... | ..-++.+|..+.....+++.++.-.+.++.+.
T Consensus 93 ~~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~~--g----RH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~ 156 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDK----------KLKSKILRQFFNN--G----RHYNISIIFLSQSYFHLPPNIRSNIDYFIIFN 156 (241)
T ss_pred ccCCCCCeEEEEeCCCCc----------hhhhHHHHHHHhc--c----cccceEEEEEeeecccCCHHHhhcceEEEEec
Confidence 1 22579999997420 0112233344322 1 33568888888888999999887776666554
Q ss_pred CCCHHHHHHHHHHH
Q 000925 1089 LPDAPNREKIIRVI 1102 (1222)
Q Consensus 1089 lPd~eeR~eILk~l 1102 (1222)
-+..+...|++.+
T Consensus 157 -~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 157 -NSKRDLENIYRNM 169 (241)
T ss_pred -CcHHHHHHHHHhc
Confidence 3555555555544
No 372
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.10 E-value=0.039 Score=60.93 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=27.7
Q ss_pred CCccceEECCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 988 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~v~~ 988 (1222)
+..-++|.|+||+|||+++..++... +.+++.+++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 43458999999999999999886554 777777764
No 373
>PRK13948 shikimate kinase; Provisional
Probab=96.08 E-value=0.0052 Score=65.98 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=32.4
Q ss_pred CCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 952 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 952 ~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
..++..|+|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 446678999999999999999999999999999666
No 374
>PRK05973 replicative DNA helicase; Provisional
Probab=96.07 E-value=0.046 Score=61.21 Aligned_cols=36 Identities=39% Similarity=0.543 Sum_probs=27.6
Q ss_pred CCCccceEECCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000925 953 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 988 (1222)
Q Consensus 953 ~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~ 988 (1222)
.+..-+||.|+||+|||+|+-.++.+. |.+++.++.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 344558999999999999999887654 666666654
No 375
>PHA02774 E1; Provisional
Probab=96.06 E-value=0.024 Score=70.03 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=27.5
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEE-Eec
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFIN-ISM 988 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~-v~~ 988 (1222)
+.++|+||||||||+||.+|++.++..++. +|.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 569999999999999999999999655544 553
No 376
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.05 E-value=0.13 Score=57.72 Aligned_cols=131 Identities=11% Similarity=0.062 Sum_probs=89.7
Q ss_pred ccceEECCCC-ChHHHHHHHHHHHhCCc---------EEEEeccccc---cccccchHHHHHHHHHHHHhc----CCcEE
Q 000925 956 KGILLFGPPG-TGKTMLAKAVATEAGAN---------FINISMSSIT---SKWFGEGEKYVKAVFSLASKI----APSVV 1018 (1222)
Q Consensus 956 ~gILL~GPpG-TGKT~LArAIA~elg~~---------fi~v~~s~L~---s~~~G~se~~I~~lF~~A~k~----~PsIL 1018 (1222)
+..||.|..+ +||..++.-+++.+.+. ++.+....-. +.. -.-..++++-..+... ..-|+
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~--I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKN--ISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCc--ccHHHHHHHHHHHhhCcccCCcEEE
Confidence 5799999998 99999999888777332 2333211100 011 1234566655554432 34699
Q ss_pred EEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHH
Q 000925 1019 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKI 1098 (1222)
Q Consensus 1019 fIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~I~lPd~eeR~eI 1098 (1222)
+|+++|.|- ....+.|+..++. ++.++++|..|..+..+.+++++|+ ..+.+..|....-.++
T Consensus 94 II~~ae~mt------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 94 IIYSAELMN------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNEL 156 (263)
T ss_pred EEechHHhC------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHH
Confidence 999999982 2344666666655 3467888888888999999999999 6788999998877777
Q ss_pred HHHHHhh
Q 000925 1099 IRVILAK 1105 (1222)
Q Consensus 1099 Lk~lL~k 1105 (1222)
...++..
T Consensus 157 ~~~~~~p 163 (263)
T PRK06581 157 YSQFIQP 163 (263)
T ss_pred HHHhccc
Confidence 7776654
No 377
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.04 E-value=0.017 Score=68.68 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=46.0
Q ss_pred cceEECCCCChHHHHHHHHHHHhC-----CcEEEEecc-ccc-----------cccccchHHHHHHHHHHHHhcCCcEEE
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-----------SKWFGEGEKYVKAVFSLASKIAPSVVF 1019 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg-----~~fi~v~~s-~L~-----------s~~~G~se~~I~~lF~~A~k~~PsILf 1019 (1222)
.+|++||+|+|||+++++++.+.. ..++.+.-+ ++. ..-+|............+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 489999999999999999987762 345554322 211 011122222355667778888999999
Q ss_pred Eccch
Q 000925 1020 VDEVD 1024 (1222)
Q Consensus 1020 IDEID 1024 (1222)
|.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99994
No 378
>PRK14532 adenylate kinase; Provisional
Probab=96.03 E-value=0.0049 Score=65.60 Aligned_cols=30 Identities=37% Similarity=0.671 Sum_probs=26.6
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEE
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINI 986 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v 986 (1222)
.|+|.||||+|||++|+.||+.+|+.++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999999776544
No 379
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.02 E-value=0.005 Score=64.99 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=27.0
Q ss_pred ceEECCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000925 958 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 992 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 992 (1222)
|+|+|+||+|||++|+.||..+++.++ ++.+++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~i--s~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHL--SAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECChHH
Confidence 689999999999999999999986554 444443
No 380
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.02 E-value=0.05 Score=63.42 Aligned_cols=97 Identities=18% Similarity=0.334 Sum_probs=54.9
Q ss_pred CCCccceEECCCCChHHHHHHHHHHHhCCcE-EEEeccccccc-------cccch---HHHHHHHHHHHHhcCCcEEEEc
Q 000925 953 KPCKGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSITSK-------WFGEG---EKYVKAVFSLASKIAPSVVFVD 1021 (1222)
Q Consensus 953 ~Pp~gILL~GPpGTGKT~LArAIA~elg~~f-i~v~~s~L~s~-------~~G~s---e~~I~~lF~~A~k~~PsILfID 1021 (1222)
.+++|+.|||+-|.|||+|.-..-+.+-.+- ..+.-..++.. ..|+. .....+++. .-.||.||
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~-----~~~vLCfD 137 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAA-----ETRVLCFD 137 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHh-----cCCEEEee
Confidence 4679999999999999999998877763321 11111111110 11211 111111111 12599999
Q ss_pred cchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCC
Q 000925 1022 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1069 (1222)
Q Consensus 1022 EID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~ 1069 (1222)
|++.= +.++...+.+++..|+. ..|.+++|+|.
T Consensus 138 EF~Vt-----DI~DAMiL~rL~~~Lf~----------~GV~lvaTSN~ 170 (367)
T COG1485 138 EFEVT-----DIADAMILGRLLEALFA----------RGVVLVATSNT 170 (367)
T ss_pred eeeec-----ChHHHHHHHHHHHHHHH----------CCcEEEEeCCC
Confidence 99742 22333445555555542 46899999985
No 381
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.00 E-value=0.025 Score=61.70 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=27.4
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---C------CcEEEEeccc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---G------ANFINISMSS 990 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g------~~fi~v~~s~ 990 (1222)
.-+.|+||||+|||+|+..+|... + ..++.++...
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 448999999999999999997654 3 5667776643
No 382
>PRK13949 shikimate kinase; Provisional
Probab=96.00 E-value=0.0049 Score=65.16 Aligned_cols=32 Identities=47% Similarity=0.708 Sum_probs=29.6
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
+.|+|+|+||+|||++++.+|+.++++|+.++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999998876
No 383
>PRK10536 hypothetical protein; Provisional
Probab=96.00 E-value=0.033 Score=62.91 Aligned_cols=44 Identities=25% Similarity=0.218 Sum_probs=30.9
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHH
Q 000925 919 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 978 (1222)
Q Consensus 919 fddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~e 978 (1222)
+..|.+.......+...+.. ..-+++.||+|||||+||.+++.+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 34455555555555554431 125899999999999999999885
No 384
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.00 E-value=0.013 Score=66.84 Aligned_cols=69 Identities=26% Similarity=0.375 Sum_probs=43.6
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCC----------cEEEEe-ccccccc-------cccc------hHHHHHHHHHHHH
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGA----------NFINIS-MSSITSK-------WFGE------GEKYVKAVFSLAS 1011 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~----------~fi~v~-~s~L~s~-------~~G~------se~~I~~lF~~A~ 1011 (1222)
.+++|.||+|+|||+|.++++..+.. .+..++ ..++... .++. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 57999999999999999999988732 222221 1111110 0110 1112345677777
Q ss_pred hcCCcEEEEccch
Q 000925 1012 KIAPSVVFVDEVD 1024 (1222)
Q Consensus 1012 k~~PsILfIDEID 1024 (1222)
.+.|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999973
No 385
>PRK06217 hypothetical protein; Validated
Probab=95.98 E-value=0.0056 Score=65.21 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=28.6
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
.|+|.|++|+|||++|++|++.++++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5899999999999999999999999987765
No 386
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=95.98 E-value=0.034 Score=73.16 Aligned_cols=138 Identities=18% Similarity=0.250 Sum_probs=80.8
Q ss_pred CccceEECCCCChHHHH-HHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhc--------------CCcEEE
Q 000925 955 CKGILLFGPPGTGKTML-AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI--------------APSVVF 1019 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~L-ArAIA~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~--------------~PsILf 1019 (1222)
.++++++||||+|||+| ..++-.++-..++.+|-+.-.. ++..+..+-.....+ +-.|||
T Consensus 1494 ~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLF 1568 (3164)
T COG5245 1494 LRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLF 1568 (3164)
T ss_pred cceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheEEE
Confidence 37899999999999995 5677777777777777543111 111222221111111 114999
Q ss_pred EccchhhhcCCCCCchHH---HHHHHHHhHhhhccCCccc------CCCcEEEEEecCCCCCC-----cHHHHhcccccc
Q 000925 1020 VDEVDSMLGRRENPGEHE---AMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRPFDL-----DEAVVRRLPRRL 1085 (1222)
Q Consensus 1020 IDEID~L~~~r~~~~~~e---~l~~il~~Ll~~ldgl~~k------~~~~VlVIaTTN~p~~L-----d~aLlrRF~~~I 1085 (1222)
.|||. | +.......+. .++.++.. .|+... .-.++++.|++|++.+. .+.++||- ..+
T Consensus 1569 cDeIn-L-p~~~~y~~~~vI~FlR~l~e~-----QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~v 1640 (3164)
T COG5245 1569 CDEIN-L-PYGFEYYPPTVIVFLRPLVER-----QGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VFV 1640 (3164)
T ss_pred eeccC-C-ccccccCCCceEEeeHHHHHh-----cccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eEE
Confidence 99998 3 3322211111 22222221 122111 11578999999987543 35666653 457
Q ss_pred cCCCCCHHHHHHHHHHHHhh
Q 000925 1086 MVNLPDAPNREKIIRVILAK 1105 (1222)
Q Consensus 1086 ~I~lPd~eeR~eILk~lL~k 1105 (1222)
.+..|.......|.+.++..
T Consensus 1641 f~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1641 FCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EecCcchhhHHHHHHHHHHH
Confidence 78899998888888887765
No 387
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.97 E-value=0.014 Score=69.87 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=22.4
Q ss_pred CCceeecCCCChhHHHHHHHHHHHhhc
Q 000925 492 CPRILLSGPAGSEIYQETLAKALAKHF 518 (1222)
Q Consensus 492 ~~~ILLsgp~gsE~Yqe~LakALA~~f 518 (1222)
...+||+||+| .++..|++|+|++.
T Consensus 136 ~n~l~l~G~~G--~GKThL~~ai~~~l 160 (405)
T TIGR00362 136 YNPLFIYGGVG--LGKTHLLHAIGNEI 160 (405)
T ss_pred CCeEEEECCCC--CcHHHHHHHHHHHH
Confidence 34689999999 89999999999987
No 388
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.95 E-value=0.34 Score=55.76 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.6
Q ss_pred CCccceEECCCCChHHHHHHHHHHHhC
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEAG 980 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~elg 980 (1222)
++..|.|+|+=|+|||++.+.+-+++.
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456799999999999999999988773
No 389
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.95 E-value=0.045 Score=61.63 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=27.0
Q ss_pred CCccceEECCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 988 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~v~~ 988 (1222)
+..-++|.|+||+|||+++..++..+ +.+++.+++
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 43458999999999999999887654 666666654
No 390
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.94 E-value=0.012 Score=69.16 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=45.4
Q ss_pred ccceEECCCCChHHHHHHHHHHHhC----CcEEEEecc-ccc---------cccccchHHHHHHHHHHHHhcCCcEEEEc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 1021 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg----~~fi~v~~s-~L~---------s~~~G~se~~I~~lF~~A~k~~PsILfID 1021 (1222)
..+||.||+|+|||+++++++..+. ..++.+.-+ ++. ..-.+.........+..+.+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 3589999999999999999988764 234433211 111 11122222235566677778899999999
Q ss_pred cch
Q 000925 1022 EVD 1024 (1222)
Q Consensus 1022 EID 1024 (1222)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 993
No 391
>PRK09354 recA recombinase A; Provisional
Probab=95.94 E-value=0.031 Score=65.79 Aligned_cols=73 Identities=25% Similarity=0.315 Sum_probs=48.7
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccc----------------ccccccchHHHHHHHHHHHHhcCCc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----------------TSKWFGEGEKYVKAVFSLASKIAPS 1016 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L----------------~s~~~G~se~~I~~lF~~A~k~~Ps 1016 (1222)
+-++|+||+|+|||+||-.++.+. |...+.++...- .-......++.+..+-...+...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 348999999999999999876443 667777775431 1101122334444344445566789
Q ss_pred EEEEccchhhhc
Q 000925 1017 VVFVDEVDSMLG 1028 (1222)
Q Consensus 1017 ILfIDEID~L~~ 1028 (1222)
+|+||-|-.|.+
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999999875
No 392
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.94 E-value=0.023 Score=69.83 Aligned_cols=93 Identities=19% Similarity=0.325 Sum_probs=61.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCcc-ceEECCCCChHHHHHHHHHHHhC---CcEEEEecc-c
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKG-ILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-S 990 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~g-ILL~GPpGTGKT~LArAIA~elg---~~fi~v~~s-~ 990 (1222)
..++++++-.++..+.+.+++.. + .| +|++||+|+|||++..++..++. ..++.+.-+ +
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------------~-~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE 281 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------------P-HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVE 281 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------C-CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCee
Confidence 35778888778888888776541 2 35 79999999999999998877763 345554321 1
Q ss_pred cc-----cccccc-hHHHHHHHHHHHHhcCCcEEEEccch
Q 000925 991 IT-----SKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 1024 (1222)
Q Consensus 991 L~-----s~~~G~-se~~I~~lF~~A~k~~PsILfIDEID 1024 (1222)
+. ...+.. .......+...+.++.|.||+|.||-
T Consensus 282 ~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 282 YQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred eecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 11 101111 11234456666778899999999994
No 393
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.93 E-value=0.063 Score=63.67 Aligned_cols=54 Identities=28% Similarity=0.402 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcchhhhhc--cChhhHHHHHHHHhcCCC-CEEEEEecc
Q 000925 660 AINELFEVALNESKSSPLIVFVKDIEKSLT--GNNDAYGALKSKLENLPS-NVVVIGSHT 716 (1222)
Q Consensus 660 ~~~~l~ev~~~esk~~P~Ilfi~die~~l~--~~~~~~~~l~~~L~~l~g-~vvvIgS~~ 716 (1222)
+++.+.+.+.. +..++||+|||+|.+.. ++..+|..+ ..++.+.+ +|.||+..+
T Consensus 125 ~~~~~~~~l~~--~~~~~viviDE~d~l~~~~~~~~l~~l~-~~~~~~~~~~v~vI~i~~ 181 (394)
T PRK00411 125 LFDKIAEYLDE--RDRVLIVALDDINYLFEKEGNDVLYSLL-RAHEEYPGARIGVIGISS 181 (394)
T ss_pred HHHHHHHHHHh--cCCEEEEEECCHhHhhccCCchHHHHHH-HhhhccCCCeEEEEEEEC
Confidence 55666666654 35789999999999662 234455544 45555655 666666665
No 394
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.93 E-value=0.0081 Score=71.75 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.4
Q ss_pred ccceEECCCCChHHHHHHHHHHH
Q 000925 956 KGILLFGPPGTGKTMLAKAVATE 978 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~e 978 (1222)
.++++.||+|||||+|+.+|+.+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHH
Confidence 58999999999999999999876
No 395
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.93 E-value=0.026 Score=62.04 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=27.1
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 990 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---------g~~fi~v~~s~ 990 (1222)
.-+.|+||||+|||+|+..++... +..++.++...
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 448999999999999999997543 25677777644
No 396
>PRK08233 hypothetical protein; Provisional
Probab=95.92 E-value=0.037 Score=58.02 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=25.4
Q ss_pred cceEECCCCChHHHHHHHHHHHhC-CcEEEEe
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAG-ANFINIS 987 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg-~~fi~v~ 987 (1222)
-|.|.|+||+||||||+.|+..++ ..++.++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 478899999999999999999985 4454444
No 397
>PRK13764 ATPase; Provisional
Probab=95.91 E-value=0.019 Score=71.88 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=41.8
Q ss_pred ccceEECCCCChHHHHHHHHHHHhC---CcEEEEec-ccc-----ccccccchHHHHHHHHHHHHhcCCcEEEEccch
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSI-----TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 1024 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg---~~fi~v~~-s~L-----~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID 1024 (1222)
.+||++||+|+||||++++++..+. ..+..+.- .++ ...+.. ...........+.+..|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 5799999999999999999998873 33333321 111 111110 00112223333457789999999994
No 398
>PRK06762 hypothetical protein; Provisional
Probab=95.90 E-value=0.015 Score=60.65 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=29.2
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 991 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L 991 (1222)
.-|+|+|+||+|||++|+.+++.++..++.++...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~ 38 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV 38 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence 458999999999999999999999656666665443
No 399
>PRK10867 signal recognition particle protein; Provisional
Probab=95.90 E-value=0.17 Score=61.30 Aligned_cols=73 Identities=23% Similarity=0.277 Sum_probs=46.6
Q ss_pred CCccceEECCCCChHHHHHHHHHHHh----CCcEEEEeccccccc---------------cc-----cchHHHHHHHHHH
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK---------------WF-----GEGEKYVKAVFSL 1009 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~v~~s~L~s~---------------~~-----G~se~~I~~lF~~ 1009 (1222)
+|.-|+++|++|+|||+++..+|..+ |..+..+++...... ++ .............
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 35669999999999999888887655 555666655321110 01 1123344455566
Q ss_pred HHhcCCcEEEEccchhh
Q 000925 1010 ASKIAPSVVFVDEVDSM 1026 (1222)
Q Consensus 1010 A~k~~PsILfIDEID~L 1026 (1222)
++.....+|+||=.-++
T Consensus 179 a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 179 AKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHhcCCCEEEEeCCCCc
Confidence 66666789999977654
No 400
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.89 E-value=0.015 Score=56.34 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.0
Q ss_pred cceEECCCCChHHHHHHHHHHHh
Q 000925 957 GILLFGPPGTGKTMLAKAVATEA 979 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~el 979 (1222)
+++|+||+|+|||+++..++.++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888877665
No 401
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.87 E-value=0.028 Score=56.91 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=37.2
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHh
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 979 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~el 979 (1222)
++.|+.-+.+.+...+...+..+ . .+.|--+-|+|++|||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~-p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------N-PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------C-CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 47788877777777776433321 1 1122346699999999999999999986
No 402
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.87 E-value=0.0066 Score=61.19 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=28.1
Q ss_pred ceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 958 ILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
|+|.|+||+|||++|+.||..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 403
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.86 E-value=0.0066 Score=64.43 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=26.2
Q ss_pred ceEECCCCChHHHHHHHHHHHhCCcEEEE
Q 000925 958 ILLFGPPGTGKTMLAKAVATEAGANFINI 986 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~elg~~fi~v 986 (1222)
|+|+|+||+|||++|+.||..+++.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 79999999999999999999998776554
No 404
>PRK14531 adenylate kinase; Provisional
Probab=95.85 E-value=0.0071 Score=64.45 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=27.6
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEE
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINI 986 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v 986 (1222)
..|+|+||||+|||++++.||..+|++++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3599999999999999999999999887654
No 405
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.84 E-value=0.023 Score=71.07 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=21.5
Q ss_pred ceeecCCCChhHHHHHHHHHHHhhc
Q 000925 494 RILLSGPAGSEIYQETLAKALAKHF 518 (1222)
Q Consensus 494 ~ILLsgp~gsE~Yqe~LakALA~~f 518 (1222)
-++|+||+| ..+..|+.|+|++.
T Consensus 316 pL~LyG~sG--sGKTHLL~AIa~~a 338 (617)
T PRK14086 316 PLFIYGESG--LGKTHLLHAIGHYA 338 (617)
T ss_pred cEEEECCCC--CCHHHHHHHHHHHH
Confidence 399999999 89999999999986
No 406
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.83 E-value=0.024 Score=65.46 Aligned_cols=69 Identities=25% Similarity=0.379 Sum_probs=47.1
Q ss_pred ccceEECCCCChHHHHHHHHHHHh-----CCcEEEEecc-ccc-------cccccchHHHHHHHHHHHHhcCCcEEEEcc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMS-SIT-------SKWFGEGEKYVKAVFSLASKIAPSVVFVDE 1022 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~s-~L~-------s~~~G~se~~I~~lF~~A~k~~PsILfIDE 1022 (1222)
.++|+.|++|+|||+++++++... +..++.+.-. ++. .-..+........++..+.+..|.+|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 579999999999999999999886 2333333211 111 101111112567788888999999999999
Q ss_pred ch
Q 000925 1023 VD 1024 (1222)
Q Consensus 1023 ID 1024 (1222)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 93
No 407
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.83 E-value=0.048 Score=63.95 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=44.3
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000925 921 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 990 (1222)
Q Consensus 921 dI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~ 990 (1222)
++.+.+.+...|..++-. .. ..-|..|+|+|..|||||++.+.+.+.++.+.+.++|-+
T Consensus 7 ~v~~Re~qi~~L~~Llg~---------~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e 65 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---------NS--CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE 65 (438)
T ss_pred CccchHHHHHHHHHHhCC---------CC--cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH
Confidence 455667777777776531 11 122356799999999999999999999999999888744
No 408
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.068 Score=63.91 Aligned_cols=127 Identities=20% Similarity=0.230 Sum_probs=66.3
Q ss_pred CccceEECCCCChHHHHHHHHHHHh-------CCc--EEEEecccc------------ccc--cccchHHHHHHHHHHHH
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINISMSSI------------TSK--WFGEGEKYVKAVFSLAS 1011 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~el-------g~~--fi~v~~s~L------------~s~--~~G~se~~I~~lF~~A~ 1011 (1222)
+..++|+||+|+|||+.+..+|..+ +.. ++.+++... ++- ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 3569999999999999999998765 233 444444211 100 1111222333333332
Q ss_pred hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhccc----ccccC
Q 000925 1012 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP----RRLMV 1087 (1222)
Q Consensus 1012 k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~----~~I~I 1087 (1222)
....+|+||.+.++. .....+ .++...++.... ....++|+.+|.....+.. +..+|. ..+.+
T Consensus 253 -~~~DlVLIDTaGr~~------~~~~~l----~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~-~~~~~~~~~~~~~I~ 319 (388)
T PRK12723 253 -KDFDLVLVDTIGKSP------KDFMKL----AEMKELLNACGR-DAEFHLAVSSTTKTSDVKE-IFHQFSPFSYKTVIF 319 (388)
T ss_pred -CCCCEEEEcCCCCCc------cCHHHH----HHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHH-HHHHhcCCCCCEEEE
Confidence 345799999998762 111112 222222222211 2256788888877666664 334442 23444
Q ss_pred CCCCHHHH
Q 000925 1088 NLPDAPNR 1095 (1222)
Q Consensus 1088 ~lPd~eeR 1095 (1222)
.-.|...+
T Consensus 320 TKlDet~~ 327 (388)
T PRK12723 320 TKLDETTC 327 (388)
T ss_pred EeccCCCc
Confidence 44454444
No 409
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.81 E-value=0.0071 Score=61.82 Aligned_cols=29 Identities=41% Similarity=0.704 Sum_probs=25.6
Q ss_pred ceEECCCCChHHHHHHHHHHHhCCcEEEE
Q 000925 958 ILLFGPPGTGKTMLAKAVATEAGANFINI 986 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~elg~~fi~v 986 (1222)
++|+|+||+|||++|+.++..++..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 68999999999999999999988776643
No 410
>PRK10436 hypothetical protein; Provisional
Probab=95.80 E-value=0.029 Score=68.50 Aligned_cols=94 Identities=18% Similarity=0.291 Sum_probs=61.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhC---CcEEEEecc-cc
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 991 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg---~~fi~v~~s-~L 991 (1222)
..++++++-.....+.+++.+.. +..-||++||+|+|||++..++..+++ .+++.+--+ ++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 34778888878888888776542 223489999999999998888777763 344444321 11
Q ss_pred c-----cccccc-hHHHHHHHHHHHHhcCCcEEEEccch
Q 000925 992 T-----SKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 1024 (1222)
Q Consensus 992 ~-----s~~~G~-se~~I~~lF~~A~k~~PsILfIDEID 1024 (1222)
. ...++. ........+..+.++.|.||+|.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 1 101111 11235566677788899999999994
No 411
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.73 E-value=0.0082 Score=62.34 Aligned_cols=28 Identities=43% Similarity=0.771 Sum_probs=24.9
Q ss_pred ceEECCCCChHHHHHHHHHHHhCCcEEE
Q 000925 958 ILLFGPPGTGKTMLAKAVATEAGANFIN 985 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~elg~~fi~ 985 (1222)
|+|.||+|+|||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5799999999999999999999876653
No 412
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.73 E-value=0.069 Score=60.40 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=25.5
Q ss_pred CccceEECCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 988 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~ 988 (1222)
..-+||+|+||+|||+|+..+|.+. |-+.+.++.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3458999999999999999886643 555555553
No 413
>PRK14530 adenylate kinase; Provisional
Probab=95.70 E-value=0.0085 Score=65.45 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=27.5
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEE
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINI 986 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v 986 (1222)
.|+|.||||+|||++|+.||..++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999999887754
No 414
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.68 E-value=0.054 Score=55.93 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=18.8
Q ss_pred ccceEECCCCChHHH-HHHHHHHHh
Q 000925 956 KGILLFGPPGTGKTM-LAKAVATEA 979 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~-LArAIA~el 979 (1222)
..+++.||+|+|||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 479999999999999 555555544
No 415
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.68 E-value=0.15 Score=59.87 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=35.3
Q ss_pred ccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcC
Q 000925 454 ESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 519 (1222)
Q Consensus 454 d~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~ 519 (1222)
++||+- |...+.|.....-.+. ...++.|+++||+| +.+.++++++++++.
T Consensus 15 ~~l~gR--e~e~~~l~~~l~~~~~-----------~~~~~~i~I~G~~G--tGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 15 DRIVHR--DEQIEELAKALRPILR-----------GSRPSNVFIYGKTG--TGKTAVTKYVMKELE 65 (365)
T ss_pred CCCCCc--HHHHHHHHHHHHHHHc-----------CCCCCcEEEECCCC--CCHHHHHHHHHHHHH
Confidence 456655 6666666554432221 13446799999999 999999999999875
No 416
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.67 E-value=0.01 Score=70.89 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=55.6
Q ss_pred chhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEecCCCC
Q 000925 460 LSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (1222)
Q Consensus 460 lse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~~~~~ 531 (1222)
--++.|.+|.-|.|.|.+...+..-.++ ....+.|||.||+| ..+.+|||+||+..+++++-+|.+.|.
T Consensus 16 GQ~eAkk~lsvAl~n~~~r~~~~~~~~~-e~~p~~ILLiGppG--~GKT~lAraLA~~l~~~fi~vdat~~~ 84 (441)
T TIGR00390 16 GQDNAKKSVAIALRNRYRRSQLNEELKD-EVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFT 84 (441)
T ss_pred CHHHHHHHHHHHHHhhhhhhcccccccc-ccCCceEEEECCCC--CCHHHHHHHHHHHhCCeEEEeecceee
Confidence 3489999999999999777655322222 11237899999999 899999999999999999999998773
No 417
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.65 E-value=0.03 Score=59.23 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=23.0
Q ss_pred CCCccceEECCCCChHHHHHHHHHHHh
Q 000925 953 KPCKGILLFGPPGTGKTMLAKAVATEA 979 (1222)
Q Consensus 953 ~Pp~gILL~GPpGTGKT~LArAIA~el 979 (1222)
.+...++|+||+||||++|.+++|.-.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 344569999999999999999999754
No 418
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.63 E-value=0.018 Score=62.72 Aligned_cols=111 Identities=21% Similarity=0.303 Sum_probs=60.3
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1035 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1035 (1222)
.-++|.|+.|+|||++.+.|+.+. +.-+... ... ..... ..... -|+.|||++.+. ...
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~-----~~~-kd~~~---~l~~~---~iveldEl~~~~-----k~~ 111 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FSDSIND-----FDD-KDFLE---QLQGK---WIVELDELDGLS-----KKD 111 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----ccCcccc-----CCC-cHHHH---HHHHh---HheeHHHHhhcc-----hhh
Confidence 348999999999999999997662 1111001 010 11111 11111 589999999873 222
Q ss_pred HHHHHHHHHhHhhhccCCc----ccCCCcEEEEEecCCCCCCc-HHHHhcccccccCC
Q 000925 1036 HEAMRKMKNEFMVNWDGLR----TKDKERVLVLAATNRPFDLD-EAVVRRLPRRLMVN 1088 (1222)
Q Consensus 1036 ~e~l~~il~~Ll~~ldgl~----~k~~~~VlVIaTTN~p~~Ld-~aLlrRF~~~I~I~ 1088 (1222)
.+.++.++..-...++... ...+....+|||||..+-|. ++--||| ..+.+.
T Consensus 112 ~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~ 168 (198)
T PF05272_consen 112 VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVS 168 (198)
T ss_pred HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEc
Confidence 3344444333222222211 11245678999999877554 4455687 334443
No 419
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.62 E-value=0.025 Score=68.55 Aligned_cols=94 Identities=21% Similarity=0.258 Sum_probs=62.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCcc-ceEECCCCChHHHHHHHHHHHhCCcEE---EEecc-
Q 000925 915 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKG-ILLFGPPGTGKTMLAKAVATEAGANFI---NISMS- 989 (1222)
Q Consensus 915 ~~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~g-ILL~GPpGTGKT~LArAIA~elg~~fi---~v~~s- 989 (1222)
...+|++++......+.+.+.+.. | .| +|++||.|+|||+...++..+++.+.. .+.-+
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~---------------p-~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPV 296 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNR---------------P-QGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPV 296 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhC---------------C-CeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCe
Confidence 356788999998888888886642 3 45 799999999999999999988865433 33211
Q ss_pred ccccccccc------hHHHHHHHHHHHHhcCCcEEEEccch
Q 000925 990 SITSKWFGE------GEKYVKAVFSLASKIAPSVVFVDEVD 1024 (1222)
Q Consensus 990 ~L~s~~~G~------se~~I~~lF~~A~k~~PsILfIDEID 1024 (1222)
++.-.-+.+ ..-.....+...-++.|.||+|.||.
T Consensus 297 E~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 297 EYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred eeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 111000000 01123445566678899999999995
No 420
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.59 E-value=0.059 Score=59.19 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.0
Q ss_pred ccceEECCCCChHHHHHHHHHH
Q 000925 956 KGILLFGPPGTGKTMLAKAVAT 977 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~ 977 (1222)
+.++|+||.|+|||+|.+.|+.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5699999999999999999973
No 421
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.58 E-value=0.0097 Score=66.17 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=28.6
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
..|+|.||||+|||++|+.||+.++++++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 45999999999999999999999998777654
No 422
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.58 E-value=0.0088 Score=63.52 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=30.1
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
..|+|.|++|+|||++.+++|+.++.+|+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999999876
No 423
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.56 E-value=0.033 Score=65.29 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=47.4
Q ss_pred ccceEECCCCChHHHHHHHHHHHhC--CcEEEEe-cccccc-----------cc--ccchHHHHHHHHHHHHhcCCcEEE
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAG--ANFINIS-MSSITS-----------KW--FGEGEKYVKAVFSLASKIAPSVVF 1019 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~v~-~s~L~s-----------~~--~G~se~~I~~lF~~A~k~~PsILf 1019 (1222)
.+||+.|++|+|||+++++++.... ..++.+. ..++.- .. .+...-....++..+.+..|.+|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 5799999999999999999998874 2333331 111110 00 111222466788889999999999
Q ss_pred Eccch
Q 000925 1020 VDEVD 1024 (1222)
Q Consensus 1020 IDEID 1024 (1222)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99994
No 424
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=95.56 E-value=0.026 Score=66.34 Aligned_cols=159 Identities=19% Similarity=0.264 Sum_probs=78.4
Q ss_pred CCCCccceEECCCCChHHHHHHHHHHHhCCcE--EEEecccccc-----------cc----ccchH----HHHHHHHHHH
Q 000925 952 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF--INISMSSITS-----------KW----FGEGE----KYVKAVFSLA 1010 (1222)
Q Consensus 952 ~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f--i~v~~s~L~s-----------~~----~G~se----~~I~~lF~~A 1010 (1222)
..||+||.|||.-|||||+|.-..-..+-... ..+....++. .. .+.+. .-+.-+-.+.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 45689999999999999999987754431100 0011001000 00 00000 0011111111
Q ss_pred HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCC-CCCCcHHHHhcccccccCCC
Q 000925 1011 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRRLPRRLMVNL 1089 (1222)
Q Consensus 1011 ~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~-p~~Ld~aLlrRF~~~I~I~l 1089 (1222)
.. .-.+|.+||+..- .-.+.-.+++++..|+. ..|+++||+|+ |++|-..-+.|= ..++
T Consensus 191 a~-ea~lLCFDEfQVT-----DVADAmiL~rLf~~Lf~----------~GvVlvATSNR~P~dLYknGlQR~---~F~P- 250 (467)
T KOG2383|consen 191 AE-EAILLCFDEFQVT-----DVADAMILKRLFEHLFK----------NGVVLVATSNRAPEDLYKNGLQRE---NFIP- 250 (467)
T ss_pred hh-hceeeeechhhhh-----hHHHHHHHHHHHHHHHh----------CCeEEEEeCCCChHHHhhcchhhh---hhhh-
Confidence 11 1269999999643 11122234444444431 46899999986 455553333321 1111
Q ss_pred CCHHHHHHHHHHHHhhcccCCcccHHHHHHHcC-C--CcHH-HHHHHHHH
Q 000925 1090 PDAPNREKIIRVILAKEELASDVDLEGIANMAD-G--YSGS-DLKNLCVT 1135 (1222)
Q Consensus 1090 Pd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~-G--ySg~-DL~~L~~~ 1135 (1222)
-..+|+..+.-..+.+.+|....+.-.+ + |.+. |...++++
T Consensus 251 -----fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~ 295 (467)
T KOG2383|consen 251 -----FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKE 295 (467)
T ss_pred -----HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHH
Confidence 2346666666667778888884333222 2 2333 55555544
No 425
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.05 Score=59.23 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.7
Q ss_pred cceEECCCCChHHHHHHHHHHHh
Q 000925 957 GILLFGPPGTGKTMLAKAVATEA 979 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~el 979 (1222)
=|+|+|+||+|||++|+.+|+++
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 37999999999999999999998
No 426
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.55 E-value=0.44 Score=55.44 Aligned_cols=127 Identities=19% Similarity=0.173 Sum_probs=66.3
Q ss_pred HHHHHHHHHhc---CCcEEEEccchhhhcCCCC-----CchHHHHHHHHHhHhhhccCCcccCCCcEE-EEEecCC---C
Q 000925 1003 VKAVFSLASKI---APSVVFVDEVDSMLGRREN-----PGEHEAMRKMKNEFMVNWDGLRTKDKERVL-VLAATNR---P 1070 (1222)
Q Consensus 1003 I~~lF~~A~k~---~PsILfIDEID~L~~~r~~-----~~~~e~l~~il~~Ll~~ldgl~~k~~~~Vl-VIaTTN~---p 1070 (1222)
+..++.+.... .|-++-||++..|+....- ...+.....+...|+..+.+-..-.++.++ .+++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 44455554432 3678889999999965311 111222334555565554433322333333 2555532 2
Q ss_pred C--CCcHHHHhccc---------------------ccccCCCCCHHHHHHHHHHHHhhcccCC----cccHHHHHHHcCC
Q 000925 1071 F--DLDEAVVRRLP---------------------RRLMVNLPDAPNREKIIRVILAKEELAS----DVDLEGIANMADG 1123 (1222)
Q Consensus 1071 ~--~Ld~aLlrRF~---------------------~~I~I~lPd~eeR~eILk~lL~k~~l~s----didl~~LA~~t~G 1123 (1222)
. .++.++..+-. ..+.++..+.+|-..+++.+....-+.. ..-.+.+...+ |
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s-~ 300 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS-N 300 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-C
Confidence 2 45555544321 1567777888888899998877644432 22233343333 3
Q ss_pred CcHHHHH
Q 000925 1124 YSGSDLK 1130 (1222)
Q Consensus 1124 ySg~DL~ 1130 (1222)
.++++|.
T Consensus 301 GNp~el~ 307 (309)
T PF10236_consen 301 GNPRELE 307 (309)
T ss_pred CCHHHhc
Confidence 4565554
No 427
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.55 E-value=0.036 Score=69.40 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=61.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCccceEECCCCChHHHHHHHHHHHhC---CcEEEEecc-c-
Q 000925 916 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-S- 990 (1222)
Q Consensus 916 ~vtfddI~Gle~ik~~L~e~v~~pL~~pelf~k~~l~~Pp~gILL~GPpGTGKT~LArAIA~elg---~~fi~v~~s-~- 990 (1222)
..++++++-.....+.+.+++.. +..-||++||+|+|||++..++..+++ .+++.+--+ +
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 35678888888888888776642 212379999999999999988877774 334443221 1
Q ss_pred ----ccccccc-chHHHHHHHHHHHHhcCCcEEEEccch
Q 000925 991 ----ITSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1024 (1222)
Q Consensus 991 ----L~s~~~G-~se~~I~~lF~~A~k~~PsILfIDEID 1024 (1222)
+....+. ........++..+.+..|.||+|.||-
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 1111111 111235566777788999999999994
No 428
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.55 E-value=0.051 Score=59.06 Aligned_cols=107 Identities=24% Similarity=0.383 Sum_probs=55.7
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCc--EEEEeccc------------ccc-ccc----c-chHHHHHHHHHHHHh
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GAN--FINISMSS------------ITS-KWF----G-EGEKYVKAVFSLASK 1012 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~--fi~v~~s~------------L~s-~~~----G-~se~~I~~lF~~A~k 1012 (1222)
+-++|.||+|+|||+.+..+|.++ +.. ++.++... +++ .++ . .....+.+.++.+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 568999999999999888888776 333 34444321 011 000 1 122334455555555
Q ss_pred cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCCCCCc
Q 000925 1013 IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1074 (1222)
Q Consensus 1013 ~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1074 (1222)
..-.+||||=..+. +...+.+.++ ..++..+. +...++|+.++...+.+.
T Consensus 82 ~~~D~vlIDT~Gr~------~~d~~~~~el-~~~~~~~~-----~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 82 KGYDLVLIDTAGRS------PRDEELLEEL-KKLLEALN-----PDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp TTSSEEEEEE-SSS------STHHHHHHHH-HHHHHHHS-----SSEEEEEEEGGGGGHHHH
T ss_pred cCCCEEEEecCCcc------hhhHHHHHHH-HHHhhhcC-----CccceEEEecccChHHHH
Confidence 45579999977532 2222222222 23333321 224566666666555555
No 429
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.54 E-value=0.011 Score=63.34 Aligned_cols=28 Identities=46% Similarity=0.859 Sum_probs=24.2
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEE
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFI 984 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi 984 (1222)
.|+|.||||+||||+|+.||+.++++-+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999999999655443
No 430
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.52 E-value=0.012 Score=61.57 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=28.9
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
..|+|+|.+|+|||++++.+|..+|.+|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999988664
No 431
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.41 E-value=0.034 Score=57.49 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=40.9
Q ss_pred ceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------cc-cchHHHHHHHHHHHHh--cCCcEEEEccc
Q 000925 958 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WF-GEGEKYVKAVFSLASK--IAPSVVFVDEV 1023 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~------~~-G~se~~I~~lF~~A~k--~~PsILfIDEI 1023 (1222)
++|+|+||+|||++|+.++..+ +...+.++...+... +. ......++.+...++. ....++++|..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~ 79 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFI 79 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccC
Confidence 6899999999999999999988 666777765333211 11 1122333444444432 23467778755
No 432
>PF13479 AAA_24: AAA domain
Probab=95.40 E-value=0.048 Score=59.77 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=38.4
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCc-EEEEecccc-cccc-----c-cchHHHHHHHHHHH--HhcCCcEEEEccchh
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGAN-FINISMSSI-TSKW-----F-GEGEKYVKAVFSLA--SKIAPSVVFVDEVDS 1025 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~-fi~v~~s~L-~s~~-----~-G~se~~I~~lF~~A--~k~~PsILfIDEID~ 1025 (1222)
-.+||||+||+|||++|..+ +-+ |+.+..... +..+ + -.+-..+.+.+..+ ....-.+|+||.++.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 46999999999999999888 222 233332210 0000 0 01222344444433 233457999998887
Q ss_pred hh
Q 000925 1026 ML 1027 (1222)
Q Consensus 1026 L~ 1027 (1222)
+.
T Consensus 80 ~~ 81 (213)
T PF13479_consen 80 LE 81 (213)
T ss_pred HH
Confidence 63
No 433
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.40 E-value=0.013 Score=61.69 Aligned_cols=30 Identities=23% Similarity=0.476 Sum_probs=26.2
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEE
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINI 986 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v 986 (1222)
-|+|.|+||+|||++|+.|+..+|+.++..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 589999999999999999999998765543
No 434
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.39 E-value=0.011 Score=62.48 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=28.4
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEec
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 988 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~ 988 (1222)
+-|+|.|+||+|||++|++++..++.+++.++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 358999999999999999999999877766544
No 435
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.37 E-value=0.033 Score=65.56 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=21.4
Q ss_pred cceEECCCCChHHHHHHHHHHHh
Q 000925 957 GILLFGPPGTGKTMLAKAVATEA 979 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~el 979 (1222)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47999999999999999999988
No 436
>PRK14528 adenylate kinase; Provisional
Probab=95.36 E-value=0.013 Score=62.80 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=27.6
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEE
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINI 986 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v 986 (1222)
+.|+|.||||+|||++|+.|+..++++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999999887654
No 437
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.36 E-value=0.23 Score=61.05 Aligned_cols=51 Identities=25% Similarity=0.403 Sum_probs=37.9
Q ss_pred ccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCC
Q 000925 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 520 (1222)
Q Consensus 452 sfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a 520 (1222)
+|+++-.. ++.+..|..+.-. .. ....+||+||+| .++++||+++|+.+..
T Consensus 12 ~~~divGq--~~i~~~L~~~i~~----~~----------l~~~~Lf~GPpG--tGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 12 TFSEVVGQ--DHVKKLIINALKK----NS----------ISHAYIFAGPRG--TGKTTVARILAKSLNC 62 (472)
T ss_pred CHHHccCc--HHHHHHHHHHHHc----CC----------CCeEEEEECCCC--CCHHHHHHHHHHHhcc
Confidence 56776665 7887777765331 11 234589999999 9999999999999765
No 438
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.36 E-value=0.022 Score=65.99 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=31.9
Q ss_pred CCCCccceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 952 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 952 ~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
..+...|+|+|.+|+|||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 455677999999999999999999999999999554
No 439
>PRK04328 hypothetical protein; Provisional
Probab=95.35 E-value=0.11 Score=58.26 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=24.8
Q ss_pred CCccceEECCCCChHHHHHHHHHHHh---CCcEEEEe
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINIS 987 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~ 987 (1222)
+...+||+|+||+|||.|+..++.+. |-+.+.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34558999999999999999876542 44554444
No 440
>PRK13946 shikimate kinase; Provisional
Probab=95.34 E-value=0.012 Score=62.73 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=29.9
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
+.|+|.|.+|+|||++++.+|+.+|++|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 56999999999999999999999999998776
No 441
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.34 E-value=0.079 Score=57.36 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.7
Q ss_pred ccceEECCCCChHHHHHHHHH
Q 000925 956 KGILLFGPPGTGKTMLAKAVA 976 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA 976 (1222)
..++|+||.|+|||+|.+.|+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 459999999999999999998
No 442
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.32 E-value=0.13 Score=56.53 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=26.7
Q ss_pred CccceEECCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 988 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~ 988 (1222)
..-++|.|+||+|||+++..++.+. +.+.+.++.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3558999999999999999887553 666666665
No 443
>PRK06547 hypothetical protein; Provisional
Probab=95.31 E-value=0.014 Score=62.11 Aligned_cols=33 Identities=33% Similarity=0.559 Sum_probs=28.7
Q ss_pred CccceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
+.-|+|.|++|+|||++|+.++..++.+++.++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 456899999999999999999999988877654
No 444
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.29 E-value=0.29 Score=58.19 Aligned_cols=115 Identities=14% Similarity=0.106 Sum_probs=63.7
Q ss_pred CcEEEEccchhhhc----CCCCCch-HHHHHHHHHhHhhhccCCcccCCCcEEEEEec--CC--------------CCCC
Q 000925 1015 PSVVFVDEVDSMLG----RRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT--NR--------------PFDL 1073 (1222)
Q Consensus 1015 PsILfIDEID~L~~----~r~~~~~-~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTT--N~--------------p~~L 1073 (1222)
|-++.||++..|+. ++..... ......+.+.++..+.+-.. ...+++++. .. ...+
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt---~g~vi~a~s~~~~~~a~~h~gv~~y~pr~ll 392 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWT---FGSVIMAISGVTTPSAFGHLGVAPYVPRKLL 392 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccc---cceEEEEecccccchhccccccccCCchHhc
Confidence 45888999999997 2222110 01112333444444443322 223444433 11 1233
Q ss_pred cHHHHh---cccccccCCCCCHHHHHHHHHHHHhhccc----CCcccHHHHHHHcCCCcHHHHHHHHH
Q 000925 1074 DEAVVR---RLPRRLMVNLPDAPNREKIIRVILAKEEL----ASDVDLEGIANMADGYSGSDLKNLCV 1134 (1222)
Q Consensus 1074 d~aLlr---RF~~~I~I~lPd~eeR~eILk~lL~k~~l----~sdidl~~LA~~t~GySg~DL~~L~~ 1134 (1222)
++..+. -| ..|+++..+.+|-..++.++++..-+ ..+..++++--+. +.+++.++.+|.
T Consensus 393 g~egfe~lqpf-~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 393 GEEGFEALQPF-VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred CccchhhccCc-CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 344333 34 34777888899999999999887432 2344566666665 567787777774
No 445
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.087 Score=62.51 Aligned_cols=96 Identities=22% Similarity=0.367 Sum_probs=67.0
Q ss_pred CCccceEECCCCChHHHHHHHHHHHh--CCcEEEEecccccc--------------ccccchHHHHHHHHHHHHhcCCcE
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSITS--------------KWFGEGEKYVKAVFSLASKIAPSV 1017 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~el--g~~fi~v~~s~L~s--------------~~~G~se~~I~~lF~~A~k~~PsI 1017 (1222)
|..-+||-|.||.|||+|.-.++..+ ..++.+++..+-.. ...--.|..+..++..+...+|.+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~l 171 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDL 171 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCE
Confidence 43458999999999999888887666 23788888755111 111124557888889999999999
Q ss_pred EEEccchhhhcCC--CCCchHHHHHHHHHhHhhh
Q 000925 1018 VFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVN 1049 (1222)
Q Consensus 1018 LfIDEID~L~~~r--~~~~~~e~l~~il~~Ll~~ 1049 (1222)
++||-|..++... ..++.-...+....+|+..
T Consensus 172 vVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 172 VVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred EEEeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 9999999998654 2234444555665555543
No 446
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.27 E-value=0.096 Score=63.72 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=41.8
Q ss_pred CCccccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhc-----CC
Q 000925 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF-----SA 520 (1222)
Q Consensus 446 ~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f-----~a 520 (1222)
+-+-..|||+|= ..+..+.+...|.-+. . +-.. ...++|+||+| .++..|+.|+|+++ ++
T Consensus 97 ~l~~~~tFdnFv--~g~~n~~a~~~~~~~~-~---------~~~~-~n~l~lyG~~G--~GKTHLl~ai~~~l~~~~~~~ 161 (440)
T PRK14088 97 PLNPDYTFENFV--VGPGNSFAYHAALEVA-K---------NPGR-YNPLFIYGGVG--LGKTHLLQSIGNYVVQNEPDL 161 (440)
T ss_pred CCCCCCcccccc--cCCchHHHHHHHHHHH-h---------CcCC-CCeEEEEcCCC--CcHHHHHHHHHHHHHHhCCCC
Confidence 345678999965 3455554433332211 1 1111 23499999999 89999999999985 34
Q ss_pred eEEEEecCC
Q 000925 521 RLLIVDSLL 529 (1222)
Q Consensus 521 ~lL~~D~~~ 529 (1222)
+.+-+++.+
T Consensus 162 ~v~yi~~~~ 170 (440)
T PRK14088 162 RVMYITSEK 170 (440)
T ss_pred eEEEEEHHH
Confidence 444444433
No 447
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.27 E-value=0.015 Score=61.61 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=29.9
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEEec
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 988 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~ 988 (1222)
..|+|.|++|+|||++++.+|..++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999999887764
No 448
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.24 E-value=0.035 Score=59.39 Aligned_cols=69 Identities=30% Similarity=0.479 Sum_probs=45.2
Q ss_pred ccceEECCCCChHHHHHHHHHHHhC--CcEEEEecc-cccc---cc----------ccchHHHHHHHHHHHHhcCCcEEE
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS---KW----------FGEGEKYVKAVFSLASKIAPSVVF 1019 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~v~~s-~L~s---~~----------~G~se~~I~~lF~~A~k~~PsILf 1019 (1222)
..++|.||+|+|||+++++++.... ...+.+... ++.. .+ .+........++..+.+..|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 5699999999999999999998763 223322211 1100 00 011123456677778888999999
Q ss_pred Eccch
Q 000925 1020 VDEVD 1024 (1222)
Q Consensus 1020 IDEID 1024 (1222)
+.|+-
T Consensus 106 igEir 110 (186)
T cd01130 106 VGEVR 110 (186)
T ss_pred EEccC
Confidence 99993
No 449
>PRK02496 adk adenylate kinase; Provisional
Probab=95.24 E-value=0.014 Score=61.99 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=27.0
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEE
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINI 986 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v 986 (1222)
.++|.||||+|||++|+.||..++++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999999877654
No 450
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.23 E-value=0.24 Score=59.81 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=26.7
Q ss_pred CceeecCCCChhHHHHHHHHHHHhhcCCeEEEEe
Q 000925 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1222)
Q Consensus 493 ~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D 526 (1222)
+.|||+||+| ..+++||++||+.++.++..++
T Consensus 37 ~~ilL~GppG--tGKTtLA~~ia~~~~~~~~~l~ 68 (413)
T PRK13342 37 SSMILWGPPG--TGKTTLARIIAGATDAPFEALS 68 (413)
T ss_pred ceEEEECCCC--CCHHHHHHHHHHHhCCCEEEEe
Confidence 3699999999 8999999999998776655544
No 451
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.23 E-value=0.014 Score=63.45 Aligned_cols=29 Identities=41% Similarity=0.748 Sum_probs=26.4
Q ss_pred ceEECCCCChHHHHHHHHHHHhCCcEEEE
Q 000925 958 ILLFGPPGTGKTMLAKAVATEAGANFINI 986 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~elg~~fi~v 986 (1222)
|+|+||||+|||++|+.||..+|++++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 79999999999999999999999877664
No 452
>PLN02200 adenylate kinase family protein
Probab=95.18 E-value=0.017 Score=64.44 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=29.4
Q ss_pred CccceEECCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 992 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~ 992 (1222)
+.-|+|.|+||+|||++|+.||..+|+.. +++.++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdll 78 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLL 78 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHH
Confidence 35689999999999999999999998754 5555554
No 453
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.16 E-value=0.064 Score=56.96 Aligned_cols=73 Identities=25% Similarity=0.394 Sum_probs=42.2
Q ss_pred cceEECCCCChHHHHHHHHHHHh-------------CCcEEEEeccccc-----------ccc-------cc--------
Q 000925 957 GILLFGPPGTGKTMLAKAVATEA-------------GANFINISMSSIT-----------SKW-------FG-------- 997 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~el-------------g~~fi~v~~s~L~-----------s~~-------~G-------- 997 (1222)
-++|+||+|+|||+++..++..+ +.+++.++...-. ..+ +-
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 38999999999999999887654 2356666653210 000 00
Q ss_pred ----------chHHHHHHHHHHHHh-cCCcEEEEccchhhhcC
Q 000925 998 ----------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGR 1029 (1222)
Q Consensus 998 ----------~se~~I~~lF~~A~k-~~PsILfIDEID~L~~~ 1029 (1222)
.....+..+...+.. ..+.+|+||.+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 012234456666666 67899999999999765
No 454
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.11 E-value=0.039 Score=61.71 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=27.9
Q ss_pred ceEECCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 000925 958 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 991 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L 991 (1222)
|+|+|+||+|||++|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999887 566777765333
No 455
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.11 E-value=0.067 Score=56.02 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=42.9
Q ss_pred CCccceEECCCCChHHHHHHHHHHHhCC--cEEEEeccccc--------ccccc-----chHHHHHHHHHHHHhcCCcEE
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSIT--------SKWFG-----EGEKYVKAVFSLASKIAPSVV 1018 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~elg~--~fi~v~~s~L~--------s~~~G-----~se~~I~~lF~~A~k~~PsIL 1018 (1222)
+...+.|.||+|+|||+|.+.|+..... --+.++...+. ...++ .....-+-.+..|--..|.||
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 4456899999999999999999876521 11222221111 00010 011223334556666789999
Q ss_pred EEccchh
Q 000925 1019 FVDEVDS 1025 (1222)
Q Consensus 1019 fIDEID~ 1025 (1222)
++||--.
T Consensus 105 llDEP~~ 111 (163)
T cd03216 105 ILDEPTA 111 (163)
T ss_pred EEECCCc
Confidence 9999853
No 456
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.11 E-value=0.11 Score=56.15 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=19.0
Q ss_pred cceEECCCCChHHHHHHHHH
Q 000925 957 GILLFGPPGTGKTMLAKAVA 976 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA 976 (1222)
.++|+||.|+|||+|.+.|+
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999998
No 457
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.09 E-value=0.06 Score=69.31 Aligned_cols=97 Identities=22% Similarity=0.317 Sum_probs=54.2
Q ss_pred cceEECCCCChHHHHHHHHHHHh---C--CcEEEEeccc----cccccccchHHHHHHHHHHH----------HhcCCcE
Q 000925 957 GILLFGPPGTGKTMLAKAVATEA---G--ANFINISMSS----ITSKWFGEGEKYVKAVFSLA----------SKIAPSV 1017 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~el---g--~~fi~v~~s~----L~s~~~G~se~~I~~lF~~A----------~k~~PsI 1017 (1222)
-++|.|+||||||+++++|...+ + .+++-+...- -+....|.....+..++... ......+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999996655 4 3444333211 11112232233444444321 0124579
Q ss_pred EEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecCCC
Q 000925 1018 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1070 (1222)
Q Consensus 1018 LfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN~p 1070 (1222)
|+|||+..+ . ..++..++..+. ...++++++=.+..
T Consensus 420 lIvDEaSMv--------d----~~~~~~Ll~~~~-----~~~rlilvGD~~QL 455 (720)
T TIGR01448 420 LIVDESSMM--------D----TWLALSLLAALP-----DHARLLLVGDTDQL 455 (720)
T ss_pred EEEeccccC--------C----HHHHHHHHHhCC-----CCCEEEEECccccc
Confidence 999999776 1 123344443322 23567777766543
No 458
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.07 E-value=0.018 Score=62.98 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=26.9
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEE
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINI 986 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v 986 (1222)
.|+++||||+|||++|+.||..++++++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999777664
No 459
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.03 E-value=0.053 Score=69.42 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=66.4
Q ss_pred cceeEEcc---cCccceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEEcCeecCCCceEEeeCCCEEEEccCC
Q 000925 151 GAVFTVGH---NRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSG 227 (1222)
Q Consensus 151 ~~~~t~G~---~~~cd~~~~~~~~s~~~c~l~~~~~~g~~~~~le~~~~~G~v~vNg~~~~k~~~~~L~~gdev~f~~~~ 227 (1222)
.-+=+||| +..-|+.|.++.|--.||-|+.. +|.-|+.|+-...--| |||||.|.- ...|+.||.|+|+ |
T Consensus 476 eG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~--~g~~~vtl~p~e~aet-yVNGk~v~e--p~qL~~GdRiilG--~ 548 (1221)
T KOG0245|consen 476 EGETRVGREDASSRQDIVLSGQLIREQHCSIRNE--GGNDVVTLEPCEDAET-YVNGKLVTE--PTQLRSGDRIILG--G 548 (1221)
T ss_pred cCceecCCCCcccCCceEecchhhhhhceEEEec--CCCceEEeccCCccce-eEccEEcCC--cceeccCCEEEEc--C
Confidence 45668995 34569999999999999999976 4555888988877766 899999987 5789999999995 6
Q ss_pred CeeEEeeecC
Q 000925 228 KHSYIFQQLS 237 (1222)
Q Consensus 228 ~~ayif~~l~ 237 (1222)
+|.|.|-+..
T Consensus 549 ~H~frfn~P~ 558 (1221)
T KOG0245|consen 549 NHVFRFNHPE 558 (1221)
T ss_pred ceeEEecCHH
Confidence 9999998873
No 460
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.00 E-value=0.018 Score=60.37 Aligned_cols=28 Identities=36% Similarity=0.676 Sum_probs=26.1
Q ss_pred ceEECCCCChHHHHHHHHHHHhCCcEEE
Q 000925 958 ILLFGPPGTGKTMLAKAVATEAGANFIN 985 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~elg~~fi~ 985 (1222)
|-+.||||||||++|+.||..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999875
No 461
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.00 E-value=0.14 Score=61.18 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=43.2
Q ss_pred CccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccc-------ccc---------ccchHHHHHHHHHHHHh-cC
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-------SKW---------FGEGEKYVKAVFSLASK-IA 1014 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~-------s~~---------~G~se~~I~~lF~~A~k-~~ 1014 (1222)
++.|+|.||+|+|||+++..||..+ +..+..+++.... ..| .......+...+..+.. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3569999999999999999999776 4444444442211 000 01223344444444443 23
Q ss_pred CcEEEEccchhh
Q 000925 1015 PSVVFVDEVDSM 1026 (1222)
Q Consensus 1015 PsILfIDEID~L 1026 (1222)
-.+||||-..+.
T Consensus 321 ~DvVLIDTaGRs 332 (436)
T PRK11889 321 VDYILIDTAGKN 332 (436)
T ss_pred CCEEEEeCcccc
Confidence 578888877543
No 462
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.98 E-value=0.44 Score=54.44 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=27.2
Q ss_pred CCccceEECCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 988 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~ 988 (1222)
+++-++|.||+|+|||+++..+|..+ |..+.-+++
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 34568899999999999999998776 555555554
No 463
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.97 E-value=0.016 Score=56.70 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=20.9
Q ss_pred ceEECCCCChHHHHHHHHHHHh
Q 000925 958 ILLFGPPGTGKTMLAKAVATEA 979 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~el 979 (1222)
|+|.|+||+|||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 464
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.96 E-value=0.16 Score=54.42 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=18.0
Q ss_pred ceEECCCCChHHHHHHHHH
Q 000925 958 ILLFGPPGTGKTMLAKAVA 976 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA 976 (1222)
++|+||.|+|||++.+.|+
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 465
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.96 E-value=0.042 Score=64.17 Aligned_cols=69 Identities=23% Similarity=0.360 Sum_probs=46.7
Q ss_pred ccceEECCCCChHHHHHHHHHHHh-----CCcEEEEe-cccccc------ccccchHHHHHHHHHHHHhcCCcEEEEccc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA-----GANFINIS-MSSITS------KWFGEGEKYVKAVFSLASKIAPSVVFVDEV 1023 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~-~s~L~s------~~~G~se~~I~~lF~~A~k~~PsILfIDEI 1023 (1222)
.++|+.|++|+|||+++++++... +..++.+. ..++.- .+.....-....++..+.+..|.+|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 579999999999999999998876 22333332 112211 011111224667888888999999999999
Q ss_pred h
Q 000925 1024 D 1024 (1222)
Q Consensus 1024 D 1024 (1222)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 3
No 466
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.92 E-value=0.12 Score=63.50 Aligned_cols=74 Identities=20% Similarity=0.216 Sum_probs=51.7
Q ss_pred CCccceEECCCCChHHHHHHHHHHHh---CCcEEEEecccc----cc----------ccc--------------cchHHH
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----TS----------KWF--------------GEGEKY 1002 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L----~s----------~~~--------------G~se~~ 1002 (1222)
+..-+||.||||+|||+|+-.++... |-+.+++...+- .. .+. ...+..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~ 341 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDH 341 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence 33559999999999999999987765 555565554321 00 000 012556
Q ss_pred HHHHHHHHHhcCCcEEEEccchhhh
Q 000925 1003 VKAVFSLASKIAPSVVFVDEVDSML 1027 (1222)
Q Consensus 1003 I~~lF~~A~k~~PsILfIDEID~L~ 1027 (1222)
+..+.+......|.+|+||-+..+.
T Consensus 342 ~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 342 LQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 7777788888899999999999874
No 467
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.91 E-value=0.058 Score=61.71 Aligned_cols=70 Identities=24% Similarity=0.410 Sum_probs=46.2
Q ss_pred cc-ceEECCCCChHHHHHHHHHHHhC----CcEEEEecc-c---------cccccccchHHHHHHHHHHHHhcCCcEEEE
Q 000925 956 KG-ILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-S---------ITSKWFGEGEKYVKAVFSLASKIAPSVVFV 1020 (1222)
Q Consensus 956 ~g-ILL~GPpGTGKT~LArAIA~elg----~~fi~v~~s-~---------L~s~~~G~se~~I~~lF~~A~k~~PsILfI 1020 (1222)
+| ||++||.|+|||+...++-.+.+ .+++.+.-+ + +...-+|.........+..|-+..|.||++
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlv 204 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILV 204 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEE
Confidence 45 89999999999998888877774 334444321 1 111123333344555666777788999999
Q ss_pred ccchh
Q 000925 1021 DEVDS 1025 (1222)
Q Consensus 1021 DEID~ 1025 (1222)
-|+-.
T Consensus 205 GEmRD 209 (353)
T COG2805 205 GEMRD 209 (353)
T ss_pred ecccc
Confidence 99853
No 468
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.86 E-value=0.21 Score=63.74 Aligned_cols=153 Identities=22% Similarity=0.284 Sum_probs=85.7
Q ss_pred ccceEECCCCChHHHHHHHHHHHh--CCcEEEEec--ccc-----ccc-------cc---cc-------------hHHHH
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA--GANFINISM--SSI-----TSK-------WF---GE-------------GEKYV 1003 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el--g~~fi~v~~--s~L-----~s~-------~~---G~-------------se~~I 1003 (1222)
+-+||.-|.|.|||+|+...+..+ +..+..+++ ++. .+- +. +. .+..+
T Consensus 38 RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~ 117 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLL 117 (894)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHH
Confidence 459999999999999999997633 444444443 221 100 00 11 11234
Q ss_pred HHHHH-HHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhHhhhccCCcccCCCcEEEEEecC-CCC-CCcHHHHhc
Q 000925 1004 KAVFS-LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN-RPF-DLDEAVVRR 1080 (1222)
Q Consensus 1004 ~~lF~-~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~Ll~~ldgl~~k~~~~VlVIaTTN-~p~-~Ld~aLlrR 1080 (1222)
..+|. .+....|.+|||||.+.+- ++ .+...++-|+.. .+.++.+|.+|. +|. .+..--++
T Consensus 118 ~~L~~Ela~~~~pl~LVlDDyHli~----~~----~l~~~l~fLl~~-------~P~~l~lvv~SR~rP~l~la~lRlr- 181 (894)
T COG2909 118 SSLLNELASYEGPLYLVLDDYHLIS----DP----ALHEALRFLLKH-------APENLTLVVTSRSRPQLGLARLRLR- 181 (894)
T ss_pred HHHHHHHHhhcCceEEEeccccccC----cc----cHHHHHHHHHHh-------CCCCeEEEEEeccCCCCcccceeeh-
Confidence 55554 3556689999999999872 22 233333444433 235677777774 332 22211111
Q ss_pred ccccccCCC----CCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHH
Q 000925 1081 LPRRLMVNL----PDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 1127 (1222)
Q Consensus 1081 F~~~I~I~l----Pd~eeR~eILk~lL~k~~l~sdidl~~LA~~t~GySg~ 1127 (1222)
+..++|.. .+.+|-.++|+..... -.+..++..|-..++|+..+
T Consensus 182 -~~llEi~~~~Lrf~~eE~~~fl~~~~~l--~Ld~~~~~~L~~~teGW~~a 229 (894)
T COG2909 182 -DELLEIGSEELRFDTEEAAAFLNDRGSL--PLDAADLKALYDRTEGWAAA 229 (894)
T ss_pred -hhHHhcChHhhcCChHHHHHHHHHcCCC--CCChHHHHHHHhhcccHHHH
Confidence 11122222 3577777777765321 12456788888899988553
No 469
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.86 E-value=0.044 Score=63.89 Aligned_cols=69 Identities=25% Similarity=0.414 Sum_probs=46.6
Q ss_pred ccceEECCCCChHHHHHHHHHHHh-----CCcEEEEec-cccc---cc---cccchHHHHHHHHHHHHhcCCcEEEEccc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISM-SSIT---SK---WFGEGEKYVKAVFSLASKIAPSVVFVDEV 1023 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~v~~-s~L~---s~---~~G~se~~I~~lF~~A~k~~PsILfIDEI 1023 (1222)
.++|+.|++|+|||+++++++.+. ...++.+.- .++. .. +....+-....++..+.+..|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 579999999999999999999764 222333221 1211 00 11112234677888899999999999999
Q ss_pred h
Q 000925 1024 D 1024 (1222)
Q Consensus 1024 D 1024 (1222)
-
T Consensus 229 R 229 (319)
T PRK13894 229 R 229 (319)
T ss_pred C
Confidence 3
No 470
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.86 E-value=0.038 Score=66.24 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=54.4
Q ss_pred hHHHHHHHHhhhhccccccccccc-CCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeEEEEecCCCC
Q 000925 462 DITKNVLIASTYVHLKCNNFAKYA-SDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (1222)
Q Consensus 462 e~tk~~L~~~~~~hL~~~~~~k~~-~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~~~~~ 531 (1222)
++.|.+|..|+|-|.+...+..-. ..+. .+.|||.||+| ..+.+|||+||+.++++++.+|.+.|-
T Consensus 21 e~AkkalavAl~~~~~r~~l~~~~~~e~~--~~~ILliGp~G--~GKT~LAr~LAk~l~~~fi~vD~t~f~ 87 (443)
T PRK05201 21 DDAKRAVAIALRNRWRRMQLPEELRDEVT--PKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFT 87 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccC--CceEEEECCCC--CCHHHHHHHHHHHhCChheeecchhhc
Confidence 889999999999998776543211 1222 37899999999 899999999999999999999998884
No 471
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.85 E-value=0.092 Score=55.14 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=26.4
Q ss_pred ceEECCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000925 958 ILLFGPPGTGKTMLAKAVATEA---GANFINISMS 989 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s 989 (1222)
+++.|+||+|||+++..+|..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6899999999999999998776 6667666654
No 472
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.82 E-value=0.51 Score=58.49 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=38.7
Q ss_pred ccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCCeE
Q 000925 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (1222)
Q Consensus 452 sfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~l 522 (1222)
+|+++... ++....|..+..- ....+.+||+||+| +.++++|+++|+.+.+.-
T Consensus 19 ~f~dliGq--~~vv~~L~~ai~~--------------~ri~~a~Lf~Gp~G--~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 19 NFAELQGQ--EVLVKVLSYTILN--------------DRLAGGYLLTGIRG--VGKTTSARIIAKAVNCSA 71 (507)
T ss_pred CHHHhcCc--HHHHHHHHHHHHc--------------CCCCceEEEECCCC--CCHHHHHHHHHHHhcCcc
Confidence 46666555 7766666554321 12256799999999 999999999999988753
No 473
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.78 E-value=0.43 Score=55.81 Aligned_cols=34 Identities=26% Similarity=0.251 Sum_probs=26.7
Q ss_pred CccceEECCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 988 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~ 988 (1222)
+.-++|.||+|+|||+++..+|..+ +..+.-+++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4568999999999999999998876 445554544
No 474
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.78 E-value=0.037 Score=64.07 Aligned_cols=69 Identities=23% Similarity=0.411 Sum_probs=45.6
Q ss_pred ccceEECCCCChHHHHHHHHHHHhC--CcEEEEec-ccccc---c----cc-----cchHHHHHHHHHHHHhcCCcEEEE
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISM-SSITS---K----WF-----GEGEKYVKAVFSLASKIAPSVVFV 1020 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~v~~-s~L~s---~----~~-----G~se~~I~~lF~~A~k~~PsILfI 1020 (1222)
..++|.||+|+|||+|+++++..+. ..++.+.- .++.- . .. +...-....++..+.+..|.+|++
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~ 224 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIIL 224 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEEE
Confidence 5799999999999999999997763 22222221 11100 0 00 111224566778888899999999
Q ss_pred ccch
Q 000925 1021 DEVD 1024 (1222)
Q Consensus 1021 DEID 1024 (1222)
||+-
T Consensus 225 gE~r 228 (308)
T TIGR02788 225 GELR 228 (308)
T ss_pred eccC
Confidence 9994
No 475
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.76 E-value=0.074 Score=63.54 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.4
Q ss_pred ccceEECCCCChHHHHHHHHHHHhC
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAG 980 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg 980 (1222)
..++|.||+|+|||+|++.|++...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 4599999999999999999998863
No 476
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.76 E-value=0.5 Score=55.61 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=50.0
Q ss_pred HHHhhhCCCeEEecCCch-hHHHHHHHHHHhh--c---------chhhhccchhhHHHHHhhhCCCCcccchhhhccc--
Q 000925 766 KQISRLFPNKVTIQLPQD-EALLSDWKQQLER--D---------VETLKGQSNIISIRSVLSRNGLDCVDLESLCIKD-- 831 (1222)
Q Consensus 766 ~~l~~lf~~~i~i~~P~D-eALlRRferq~e~--~---------Lpd~~gR~~Il~IhT~l~~~~l~~~dLe~La~~t-- 831 (1222)
+++..+|.-.|.+..|.+ +....-..+...+ + ......+.+|...+..+..-.+++..++.++...
T Consensus 187 ~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~ 266 (334)
T PRK13407 187 PQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIA 266 (334)
T ss_pred HHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHH
Confidence 678888999999998877 3322222221111 1 1223345677777766766666666555544332
Q ss_pred -c-CCCHHHHHHHHhhhhhhhhcc
Q 000925 832 -Q-TLTTEGVEKIVGWALSHHFMH 853 (1222)
Q Consensus 832 -k-g~sgadI~~Lv~~A~s~Al~r 853 (1222)
. .=.-++|. +++.|+.+|+..
T Consensus 267 ~~~~s~Ra~i~-l~~aA~a~A~l~ 289 (334)
T PRK13407 267 LGSDGLRGELT-LLRAARALAAFE 289 (334)
T ss_pred HCCCCchHHHH-HHHHHHHHHHHc
Confidence 2 11235555 788888888764
No 477
>PRK04040 adenylate kinase; Provisional
Probab=94.74 E-value=0.025 Score=60.99 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=25.5
Q ss_pred ccceEECCCCChHHHHHHHHHHHh--CCcEE
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA--GANFI 984 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el--g~~fi 984 (1222)
.-|+|+|+||+|||++++.++..+ +..++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 568999999999999999999999 55554
No 478
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.72 E-value=0.055 Score=56.87 Aligned_cols=66 Identities=24% Similarity=0.306 Sum_probs=43.5
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccccccc---cc----hHHHHHHHHHHHHhc--CCcEEEEc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF---GE----GEKYVKAVFSLASKI--APSVVFVD 1021 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~---G~----se~~I~~lF~~A~k~--~PsILfID 1021 (1222)
.-|+|+|.+|+|||+||+++.+.+ +.+++.++...+...+. +. -...++.+...|+.. +..|+++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva 80 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA 80 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 348999999999999999998887 88999999866543321 11 133556666655432 22355444
No 479
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.72 E-value=0.066 Score=57.85 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=30.4
Q ss_pred CccceEECCCCChHHHHHHHHHHHh-CCcEEEEeccccccc
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSK 994 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~el-g~~fi~v~~s~L~s~ 994 (1222)
|.-++|.|+||+|||+++..+...+ +..++.++..++...
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 4668999999999999999999988 778888887665443
No 480
>PRK04182 cytidylate kinase; Provisional
Probab=94.72 E-value=0.026 Score=58.99 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=26.7
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEE
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFIN 985 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~ 985 (1222)
.|+|.|++|+|||++|+.+|..++++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999998775
No 481
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.72 E-value=0.14 Score=65.99 Aligned_cols=73 Identities=23% Similarity=0.287 Sum_probs=46.8
Q ss_pred ccceEECCCCChHHHHHHHHHHH---hCCcEEEEecccccc----------------ccccchHHHHHHHHHHHHhcCCc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIAPS 1016 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~e---lg~~fi~v~~s~L~s----------------~~~G~se~~I~~lF~~A~k~~Ps 1016 (1222)
.-++|+||+|+|||+|+..++.. .|...+.++...-.. ......+..+..+-...+...+.
T Consensus 61 siteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~ 140 (790)
T PRK09519 61 RVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALD 140 (790)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCe
Confidence 44899999999999999765443 366666666543111 01112233333333344556789
Q ss_pred EEEEccchhhhc
Q 000925 1017 VVFVDEVDSMLG 1028 (1222)
Q Consensus 1017 ILfIDEID~L~~ 1028 (1222)
+|+||-|..|+.
T Consensus 141 LVVIDSI~aL~~ 152 (790)
T PRK09519 141 IVVIDSVAALVP 152 (790)
T ss_pred EEEEcchhhhcc
Confidence 999999999985
No 482
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.71 E-value=0.3 Score=53.21 Aligned_cols=54 Identities=15% Similarity=-0.011 Sum_probs=38.0
Q ss_pred cccccccccccchhHHHHHHHHhhhhcccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhcC
Q 000925 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 519 (1222)
Q Consensus 449 ~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~ 519 (1222)
..-|||+|=+.-.+++...|...+. ....+-|||.||+| ..+..||++++++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~lll~G~~G--~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA---------------GKGDRFLYLWGESG--SGKSHLLQAACAAAE 63 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh---------------cCCCCeEEEECCCC--CCHHHHHHHHHHHHH
Confidence 3468888743344555555554432 12356799999999 899999999999863
No 483
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.69 E-value=0.19 Score=55.16 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=25.8
Q ss_pred CCccceEECCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 988 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~ 988 (1222)
+...++|.|+||+|||+|+..++.+. +...+.++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 44569999999999999999876543 445555553
No 484
>PRK14527 adenylate kinase; Provisional
Probab=94.69 E-value=0.023 Score=60.94 Aligned_cols=31 Identities=35% Similarity=0.655 Sum_probs=27.0
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCCcEEEE
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGANFINI 986 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~~fi~v 986 (1222)
.-|+++||||+|||++|+.||..+++..+..
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 5699999999999999999999998765544
No 485
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.68 E-value=0.036 Score=65.22 Aligned_cols=69 Identities=22% Similarity=0.422 Sum_probs=46.5
Q ss_pred ccceEECCCCChHHHHHHHHHHHhCC--cEEEEec-ccccc-------c-c----ccchHHHHHHHHHHHHhcCCcEEEE
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEAGA--NFINISM-SSITS-------K-W----FGEGEKYVKAVFSLASKIAPSVVFV 1020 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~elg~--~fi~v~~-s~L~s-------~-~----~G~se~~I~~lF~~A~k~~PsILfI 1020 (1222)
.+||+.||+|+|||+++++++..... .++.+.- .++.- . + .+...-....++..+.+..|.+|++
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Iiv 242 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILL 242 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEEE
Confidence 57999999999999999999988632 3333221 11110 0 0 0111234567888888999999999
Q ss_pred ccch
Q 000925 1021 DEVD 1024 (1222)
Q Consensus 1021 DEID 1024 (1222)
.|+-
T Consensus 243 GEiR 246 (344)
T PRK13851 243 GEMR 246 (344)
T ss_pred EeeC
Confidence 9993
No 486
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.66 E-value=0.026 Score=57.99 Aligned_cols=32 Identities=38% Similarity=0.644 Sum_probs=25.5
Q ss_pred EECCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000925 960 LFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 960 L~GPpGTGKT~LArAIA~elg~~fi~v~~s~L~s 993 (1222)
|.||||+|||++|+.||.++++.. ++..+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~--is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVH--ISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEE--EEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcce--echHHHHH
Confidence 689999999999999999998754 44445443
No 487
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.65 E-value=0.048 Score=65.64 Aligned_cols=84 Identities=29% Similarity=0.409 Sum_probs=60.7
Q ss_pred cCCCccccccccccccchhHHHHHHHHhhhhccccccc--cccc-CCCCCCCCceeecCCCChhHHHHHHHHHHHhhcCC
Q 000925 444 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNF--AKYA-SDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 520 (1222)
Q Consensus 444 v~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~--~k~~-~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a 520 (1222)
..+++|.-.++++ .+--|+.|..|.-|.|-|.+.-.. .... .+..-....|||.||+| ..+++|||+||+.+++
T Consensus 66 ~~p~~i~~~L~~~-ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~G--sGKT~lAraLA~~l~~ 142 (413)
T TIGR00382 66 PTPKEIKAHLDEY-VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTG--SGKTLLAQTLARILNV 142 (413)
T ss_pred CCHHHHHHHhcce-ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCC--cCHHHHHHHHHHhcCC
Confidence 3444555555543 123489999999999999887432 1110 11223456899999999 8999999999999999
Q ss_pred eEEEEecCCC
Q 000925 521 RLLIVDSLLL 530 (1222)
Q Consensus 521 ~lL~~D~~~~ 530 (1222)
++.++|.+.|
T Consensus 143 pf~~~da~~L 152 (413)
T TIGR00382 143 PFAIADATTL 152 (413)
T ss_pred CeEEechhhc
Confidence 9999998776
No 488
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.62 E-value=0.29 Score=59.07 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=25.0
Q ss_pred ccceEECCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA----GANFINISM 988 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el----g~~fi~v~~ 988 (1222)
.-++|.||+|+|||+++..+|..+ |..+..+++
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~ 260 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT 260 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 458999999999999999998654 444444443
No 489
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.60 E-value=0.021 Score=60.61 Aligned_cols=30 Identities=37% Similarity=0.594 Sum_probs=27.2
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEEe
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINIS 987 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v~ 987 (1222)
.|+|+|.||+|||++++.++ .+|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47999999999999999999 9999888765
No 490
>PLN02674 adenylate kinase
Probab=94.60 E-value=0.029 Score=62.99 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=27.8
Q ss_pred CccceEECCCCChHHHHHHHHHHHhCCcEEEE
Q 000925 955 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 986 (1222)
Q Consensus 955 p~gILL~GPpGTGKT~LArAIA~elg~~fi~v 986 (1222)
...|+|.||||+||+++|+.||..++++.+..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 35799999999999999999999998766544
No 491
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.60 E-value=0.13 Score=59.80 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=27.2
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 990 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---------g~~fi~v~~s~ 990 (1222)
.-++|+||||+|||.|+..+|... +..+++++...
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 448999999999999999998663 23677777644
No 492
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.58 E-value=0.15 Score=61.89 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=23.9
Q ss_pred CCceeecCCCChhHHHHHHHHHHHhhcC
Q 000925 492 CPRILLSGPAGSEIYQETLAKALAKHFS 519 (1222)
Q Consensus 492 ~~~ILLsgp~gsE~Yqe~LakALA~~f~ 519 (1222)
.+-|+|+|||| +.+.+|||+||+.+.
T Consensus 194 ~~~iil~GppG--tGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPG--VGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCC--CCHHHHHHHHHHHhc
Confidence 57899999999 899999999999875
No 493
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.58 E-value=0.087 Score=60.12 Aligned_cols=69 Identities=26% Similarity=0.356 Sum_probs=37.2
Q ss_pred ceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccc--c-ccc-cchHHHHHHHHHHHH---hcCCcEEEEccchhh
Q 000925 958 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--S-KWF-GEGEKYVKAVFSLAS---KIAPSVVFVDEVDSM 1026 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~--s-~~~-G~se~~I~~lF~~A~---k~~PsILfIDEID~L 1026 (1222)
|+|+|-||+|||++|+.|+..+ +..++.++-..+. . .|. ...|+.++..+..+- -....|+++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 7999999999999999998876 5677777643332 1 121 223555555443321 123479999988655
No 494
>PRK06696 uridine kinase; Validated
Probab=94.57 E-value=0.065 Score=59.00 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=30.9
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 992 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~v~~s~L~ 992 (1222)
.-|.|.|++|+|||+||+.|+..+ |.+++.+.+.++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 458999999999999999999998 6777777665543
No 495
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.56 E-value=0.15 Score=59.01 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=27.4
Q ss_pred ccceEECCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 000925 956 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 990 (1222)
Q Consensus 956 ~gILL~GPpGTGKT~LArAIA~el---------g~~fi~v~~s~ 990 (1222)
.-++|+||||+|||+|+..+|... +...++++...
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 447999999999999999998663 23677777654
No 496
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.56 E-value=0.21 Score=55.60 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.8
Q ss_pred ceEECCCCChHHHHHHHHHHH
Q 000925 958 ILLFGPPGTGKTMLAKAVATE 978 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~e 978 (1222)
-||+||+|+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 489999999999999999764
No 497
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.55 E-value=0.03 Score=58.15 Aligned_cols=29 Identities=41% Similarity=0.702 Sum_probs=26.4
Q ss_pred ceEECCCCChHHHHHHHHHHHhCCcEEEE
Q 000925 958 ILLFGPPGTGKTMLAKAVATEAGANFINI 986 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~elg~~fi~v 986 (1222)
|.|+|++|+|||++|+.+++.++++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999887654
No 498
>PRK01184 hypothetical protein; Provisional
Probab=94.52 E-value=0.029 Score=59.50 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=25.2
Q ss_pred cceEECCCCChHHHHHHHHHHHhCCcEEEE
Q 000925 957 GILLFGPPGTGKTMLAKAVATEAGANFINI 986 (1222)
Q Consensus 957 gILL~GPpGTGKT~LArAIA~elg~~fi~v 986 (1222)
-|+|+|+||+||||+++ +++++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999987 788999888665
No 499
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.52 E-value=0.12 Score=53.43 Aligned_cols=71 Identities=25% Similarity=0.408 Sum_probs=42.0
Q ss_pred CCccceEECCCCChHHHHHHHHHHHhCCc--EEEEecccccc-------c---c---ccchHHHHHHHHHHHHhcCCcEE
Q 000925 954 PCKGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITS-------K---W---FGEGEKYVKAVFSLASKIAPSVV 1018 (1222)
Q Consensus 954 Pp~gILL~GPpGTGKT~LArAIA~elg~~--fi~v~~s~L~s-------~---~---~G~se~~I~~lF~~A~k~~PsIL 1018 (1222)
+...+.|.|++|+|||+|+++|+..+... -+.++...+.. . + +..++ .-+-.+..+--..|.++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRVALARALLLNPDLL 102 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHHHHHHHHhcCCCEE
Confidence 33568999999999999999998766321 12333221110 0 0 11122 22223444445578999
Q ss_pred EEccchh
Q 000925 1019 FVDEVDS 1025 (1222)
Q Consensus 1019 fIDEID~ 1025 (1222)
++||...
T Consensus 103 ilDEp~~ 109 (157)
T cd00267 103 LLDEPTS 109 (157)
T ss_pred EEeCCCc
Confidence 9999864
No 500
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.49 E-value=0.031 Score=58.12 Aligned_cols=26 Identities=42% Similarity=0.671 Sum_probs=21.3
Q ss_pred ceEECCCCChHHHHHHHHHHHhCCcEE
Q 000925 958 ILLFGPPGTGKTMLAKAVATEAGANFI 984 (1222)
Q Consensus 958 ILL~GPpGTGKT~LArAIA~elg~~fi 984 (1222)
|.|+|++|||||+|+++|+.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 88876
Done!