Query 000925
Match_columns 1222
No_of_seqs 515 out of 3725
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 16:20:00 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000925.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_694-698//hhsearch_pdb/000925hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 599.9 11.0 546 449-1208 199-763 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 415.6 4.9 546 449-1208 199-763 (806)
3 4b4t_J 26S protease regulatory 1.0 1 1 374.6 25.3 250 914-1192 142-395 (405)
4 3cf2_A TER ATPase, transitiona 1.0 1 1 374.4 11.7 288 915-1215 199-488 (806)
5 4b4t_I 26S protease regulatory 1.0 1 1 367.5 21.6 251 914-1193 176-430 (437)
6 4b4t_M 26S protease regulatory 1.0 1 1 367.3 24.2 253 913-1194 174-430 (434)
7 4b4t_H 26S protease regulatory 1.0 1 1 366.5 25.6 261 914-1204 203-467 (467)
8 4b4t_L 26S protease subunit RP 1.0 1 1 363.6 22.7 251 914-1193 175-429 (437)
9 4b4t_K 26S protease regulatory 1.0 1 1 351.6 25.3 250 914-1192 166-421 (428)
10 1xwi_A SKD1 protein; VPS4B, AA 1.0 1 1 312.5 28.0 291 915-1211 7-322 (322)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=599.90 Aligned_cols=546 Identities=28% Similarity=0.425 Sum_probs=439.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 43333344544226789999873321024543101147799888921301789705789999999985607729998367
Q 000925 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1222)
Q Consensus 449 ~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~~ 528 (1222)
-+|+|++...+ +..|..|.+....+|+++++.+ +--....++|||+|||| ..+.+||||+|+++++.++.++.+
T Consensus 199 ~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~f~--~~g~~~p~GILL~GPPG--TGKT~LAraiA~elg~~~~~v~~~ 272 (806)
T 3cf2_A 199 NEVGYDDIGGC--RKQLAQIKEMVELPLRHPALFK--AIGVKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGGGT--SCCCCCCCEEEEECCTT--SCHHHHHHHHHTTTTCEEEEEEHH
T ss_pred CCCCHHHHCCH--HHHHHHHHHHHHHHCCCHHHHH--HCCCCCCCEEEEECCCC--CCHHHHHHHHHHHHCCEEEEEEHH
T ss_conf 99990351499--9999999999998751989886--35899997589779899--988999999999719839999737
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 88999888985322334876557778999975545777632358983215302577753467889998654440331123
Q 000925 529 LLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFE 608 (1222)
Q Consensus 529 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~G~~~~~~~~~~~~~~~~~g~rg~v~~~~e 608 (1222)
++.. +|+|
T Consensus 273 ~l~s--------------------------------------------k~~g---------------------------- 280 (806)
T 3cf2_A 273 EIMS--------------------------------------------KLAG---------------------------- 280 (806)
T ss_dssp HHHS--------------------------------------------SCTT----------------------------
T ss_pred HHHC--------------------------------------------CCCH----------------------------
T ss_conf 9543--------------------------------------------3316----------------------------
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHH
Q ss_conf 58999703430489987788898767888740014664446998604678999999999861038898699973614442
Q 000925 609 DNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSL 688 (1222)
Q Consensus 609 ~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~dve~~l 688 (1222)
+....+..+|+.+.. .+|.||||+|+|.+.
T Consensus 281 -----------------------------------------------ese~~lr~lF~~A~~---~~PsIIfIDEiDal~ 310 (806)
T 3cf2_A 281 -----------------------------------------------ESESNLRKAFEEAEK---NAPAIIFIDELDAIA 310 (806)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHTT---SCSEEEEEESGGGTC
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHH---CCCEEEEEEHHCCCC
T ss_conf -----------------------------------------------789999999999997---299299985100233
Q ss_pred CC--------CHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCCCCEEECCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 14--------8336899999872399--9899997315788732247989751522475033220136899855223233
Q 000925 689 TG--------NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 758 (1222)
Q Consensus 689 ~~--------~~~~~~~l~~~L~~l~--g~vivIgS~~~~d~~k~k~~~~~~~l~~f~~~~~~~~d~~~pd~~~~~~~~~ 758 (1222)
.. ..++.+.|...++.+. ++|+|||++|++|. +|+
T Consensus 311 ~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~----------------------LD~------------- 355 (806)
T 3cf2_A 311 PKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS----------------------IDP------------- 355 (806)
T ss_dssp CTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT----------------------SCT-------------
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHH----------------------CCH-------------
T ss_conf 445778873999999999999746666698799996698032----------------------698-------------
Q ss_pred CCCHHHHHHHHHHCCCEEEECCCCHHHHHH--HHHHHHHHCCHHHHCCCHHHHHHHHHHHCCC-CCCCCHHHHCCCCCCC
Q ss_conf 562689989763179808853884467999--9999971101123202103678877330898-8621000220256888
Q 000925 759 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLT 835 (1222)
Q Consensus 759 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rf~rqle~~Lpd~~gR~~Il~IhT~l~~~~l-~~~dL~~La~~tkg~s 835 (1222)
|++| ||++++++++|+..+|..|+++|+... .+ .++++..||..|.||+
T Consensus 356 --------------------------ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~--~~~~dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 356 --------------------------ALRRFGRFDREVDIGIPDATGRLEILQIHTKNM--KLADDVDLEQVANETHGHV 407 (806)
T ss_dssp --------------------------TTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS--EECTTCCHHHHHHHCCSCC
T ss_pred --------------------------HHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHCCCCC
T ss_conf --------------------------885786361688668979899999999985689--9886438999997568998
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC-CCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 7889998722512011024678887-7852-2236731544888875442111222100002672689997715989999
Q 000925 836 TEGVEKIVGWALSHHFMHCSEAPGK-DAKL-KISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPS 913 (1222)
Q Consensus 836 gadI~~Lv~~A~s~al~r~~~~i~~-~~kl-~id~~sik~~~~df~~al~eik~~~~slk~iv~~~e~e~~ll~~iip~~ 913 (1222)
|+||..+|..|+..++.|..+.+.. .... ......+.+...||+.++.+.++... .+ ....
T Consensus 408 gaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~--r~---------------~~~~ 470 (806)
T 3cf2_A 408 GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL--RE---------------TVVE 470 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCC--CC---------------CCCB
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCEEEHHHHHHHHHHCCCCCC--CC---------------CCCC
T ss_conf 999999999999999984145120001332045522556519999999972878311--23---------------4445
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98877311258399999999998820268255511877788966247779988599999999999199399996663110
Q 000925 914 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 914 e~~~tfddI~Gle~vk~~L~e~I~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkAIA~elg~pfi~I~~seL~s 993 (1222)
.+.++|++++|++++++.|++.+.+|+.+++.|.+.+ ..|++|+|||||||||||++|+++|++++.+|+.++++++++
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHC
T ss_conf 7887888817889999999999975666899997148-888860798668778963999999998389668742411210
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0136308999999999883199179983302221288998--62799999998676540698556787679998059988
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 994 ~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
+|+|++|+.++.+|..|++.+||||||||||.|++.|... .......+++++|+.+|+|+... .+|+||||||+|+
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~--~~V~vi~aTN~p~ 627 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPD 627 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS--SSEEEECC-CCSS
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCCH
T ss_conf 33436899999999999972996352042567763158888898669999999999997487877--9989999379804
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98499981--0354524789997899999999995222589012999999837993999999999998542699998999
Q 000925 1072 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1149 (1222)
Q Consensus 1072 ~Ld~aLlr--RFd~~I~I~lPd~eeR~eILk~lL~k~~l~~didl~~LA~~TeGySg~DL~~Lv~~Aa~~aireil~~~~ 1149 (1222)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|++|++.++|+.++...
T Consensus 628 ~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~ 707 (806)
T 3cf2_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 707 (806)
T ss_dssp SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC---
T ss_pred HCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 38984717785507999799699999999999856799987789999997689999999999999999999999998564
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99999985115999998866555453999999999815562111111002458999633
Q 000925 1150 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1208 (1222)
Q Consensus 1150 ~e~~la~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~WnDIgG 1208 (1222)
......... ............++++++||..|+++++||++.+ .+..+.+|...++
T Consensus 708 ~~~~~~~~~-~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~--~l~~y~~~~~~f~ 763 (806)
T 3cf2_A 708 RRERERQTN-PSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYEMFAQTLQ 763 (806)
T ss_dssp ---------------------CCC----CCTTTC-----------------CCCC----
T ss_pred HHHHHHCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHH
T ss_conf 443330157-4100123345668647999999998679999999--9999999999972
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=415.59 Aligned_cols=546 Identities=28% Similarity=0.424 Sum_probs=396.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 43333344544226789999873321024543101147799888921301789705789999999985607729998367
Q 000925 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1222)
Q Consensus 449 ~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~~~~ILLsgp~gsE~Yqe~LakALA~~f~a~lL~~D~~ 528 (1222)
-.++|+++-.+ +..+..|.+....+|+++++.+.. --.....|||.||+| ..+++||||||+..+..++.++..
T Consensus 199 ~~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~~~l--~i~~~~~vLL~Gp~G--tGKTtLarala~~l~~~~i~v~~~ 272 (806)
T 1ypw_A 199 NEVGYDDVGGC--RKQLAQIKEMVELPLRHPALFKAI--GVKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGGTSS--CCCCCCEEEECSCTT--SSHHHHHHHHHHTTTCEEEEEEHH
T ss_pred CCCCHHHHCCH--HHHHHHHHHHHHHHHHCHHHHHHC--CCCCCCEEEEECCCC--CCHHHHHHHHHHHCCCCEEEEECH
T ss_conf 78998882880--999999999999874298999863--889997389989399--987999999999719968999755
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 88999888985322334876557778999975545777632358983215302577753467889998654440331123
Q 000925 529 LLPGHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFE 608 (1222)
Q Consensus 529 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gd~v~~~G~~~~~~~~~~~~~~~~~g~rg~v~~~~e 608 (1222)
.+.. +|.|
T Consensus 273 ~l~~--------------------------------------------~~~g---------------------------- 280 (806)
T 1ypw_A 273 EIMS--------------------------------------------KLAG---------------------------- 280 (806)
T ss_dssp HHSS--------------------------------------------SSTT----------------------------
T ss_pred HHHH--------------------------------------------HHHH----------------------------
T ss_conf 7654--------------------------------------------4101----------------------------
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHH
Q ss_conf 58999703430489987788898767888740014664446998604678999999999861038898699973614442
Q 000925 609 DNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSL 688 (1222)
Q Consensus 609 ~n~~~kv~v~fd~~~~~~~~l~~~c~~~~~~~~~~~~l~~d~~~~~~~~k~~~~~l~ev~~~esk~~P~Ilfi~dve~~l 688 (1222)
.-...+..+|+-+.. ..|.||||+|++.++
T Consensus 281 -----------------------------------------------~~~~~l~~vf~~a~~---~~p~il~iDEid~l~ 310 (806)
T 1ypw_A 281 -----------------------------------------------ESESNLRKAFEEAEK---NAPAIIFIDELDAIA 310 (806)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHH---HCSEEEEEESGGGTS
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHH---CCCCEEEECCHHHHH
T ss_conf -----------------------------------------------589999999999986---499579830077751
Q ss_pred CCC--------HHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCCCCEEECCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 148--------336899999872399--9899997315788732247989751522475033220136899855223233
Q 000925 689 TGN--------NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 758 (1222)
Q Consensus 689 ~~~--------~~~~~~l~~~L~~l~--g~vivIgS~~~~d~~k~k~~~~~~~l~~f~~~~~~~~d~~~pd~~~~~~~~~ 758 (1222)
... .+....+...++.+. .+++||++++.++. +|+
T Consensus 311 ~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~----------------------ld~------------- 355 (806)
T 1ypw_A 311 PKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS----------------------IDP------------- 355 (806)
T ss_dssp CTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT----------------------SCT-------------
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHH----------------------CCH-------------
T ss_conf 114666316889999999998654114661787602398100----------------------499-------------
Q ss_pred CCCHHHHHHHHHHCCCEEEECCCCHHHHHH--HHHHHHHHCCHHHHCCCHHHHHHHHHHHCCC-CCCCCHHHHCCCCCCC
Q ss_conf 562689989763179808853884467999--9999971101123202103678877330898-8621000220256888
Q 000925 759 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLT 835 (1222)
Q Consensus 759 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rf~rqle~~Lpd~~gR~~Il~IhT~l~~~~l-~~~dL~~La~~tkg~s 835 (1222)
+++| ||++++++..|+...|.+|++++.. ...+ .+.++..++..+.+|.
T Consensus 356 --------------------------al~r~gRf~~~i~i~~p~~~~r~~il~~~~~--~~~l~~~~~l~~la~~t~g~~ 407 (806)
T 1ypw_A 356 --------------------------ALRRFGRFDREVDIGIPDATGRLEILQIHTK--NMKLADDVDLEQVANETHGHV 407 (806)
T ss_dssp --------------------------TTTSTTSSCEEECCCCCCHHHHHHHHHHTTT--TSCCCTTCCTHHHHHSCSSCC
T ss_pred --------------------------HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCCCCHHHHHHHHHCCCC
T ss_conf --------------------------9864655444355699999999999999873--387762200677777614753
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCC-CCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 78899987225120110246788877-8522-236731544888875442111222100002672689997715989999
Q 000925 836 TEGVEKIVGWALSHHFMHCSEAPGKD-AKLK-ISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPS 913 (1222)
Q Consensus 836 gadI~~Lv~~A~s~al~r~~~~i~~~-~kl~-id~~sik~~~~df~~al~eik~~~~slk~iv~~~e~e~~ll~~iip~~ 913 (1222)
++++..+|..|...++.+....+... ..+. .....+.+...+|..++....+.. .......
T Consensus 408 g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~-----------------~~~~~~~ 470 (806)
T 1ypw_A 408 GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA-----------------LRETVVE 470 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCC-----------------CCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHH-----------------HHHHCCC
T ss_conf 68999999999999876420101155420101244455555665311112357144-----------------4200025
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98877311258399999999998820268255511877788966247779988599999999999199399996663110
Q 000925 914 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 914 e~~~tfddI~Gle~vk~~L~e~I~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkAIA~elg~pfi~I~~seL~s 993 (1222)
.+.++|++++|++.+++.|.+.+.+++.+++.|...++ .++.++||+||||||||++|+++|.+++.+|+.++++++.+
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCC-CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHH
T ss_conf 75421111244302222189999755536398975488-87753689779998789999999998489879986167655
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0136308999999999883199179983302221288998--62799999998676540698556787679998059988
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 994 ~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
.|+|+.++.++.+|..|+...|+||||||||.++..+... .......+++++|+..+++.... .+++||+|||+++
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~--~~v~vI~tTN~~~ 627 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPD 627 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCG
T ss_pred HHCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCCC
T ss_conf 30575478899999998706985999987445421126877776416899999999987545666--8769998438712
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98499981--0354524789997899999999995222589012999999837993999999999998542699998999
Q 000925 1072 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1149 (1222)
Q Consensus 1072 ~Ld~aLlr--RFd~~I~I~lPd~eeR~eILk~lL~k~~l~~didl~~LA~~TeGySg~DL~~Lv~~Aa~~aireil~~~~ 1149 (1222)
.+|++++| ||+..+++++|+.++|..||+.++.+..+..++++..|+..+.||+++||.++|+.|+..++++.++...
T Consensus 628 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~ 707 (806)
T 1ypw_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 707 (806)
T ss_dssp GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC-----
T ss_pred CCCHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 27987837655673055599799999999999864599975227999997350059999999999999999999999877
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99999985115999998866555453999999999815562111111002458999633
Q 000925 1150 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1208 (1222)
Q Consensus 1150 ~e~~la~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~WnDIgG 1208 (1222)
........ ..............+++++||..|++.++|+++.+ ....+..|...++
T Consensus 708 ~~~~~~~~-~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~--~~~~ye~~~~~~~ 763 (806)
T 1ypw_A 708 RRERERQT-NPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYEMFAQTLQ 763 (806)
T ss_dssp --------------------CCTTTTTTSSCCCCCC-----------------------
T ss_pred HHHHHHCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHH
T ss_conf 66543014-64312334346667607999999998678999999--9999999999997
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=374.61 Aligned_cols=250 Identities=33% Similarity=0.581 Sum_probs=229.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98877311258399999999998820268255511877788966247779988599999999999199399996663110
Q 000925 914 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 914 e~~~tfddI~Gle~vk~~L~e~I~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkAIA~elg~pfi~I~~seL~s 993 (1222)
.+.++|+||+|+++++++|++.+.+|+.+|++|.+.++ .||+|+|||||||||||++|+|+|++++++|+.++++++.+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHC
T ss_conf 99998888288899999999999998749999986799-98882588589999878999999985188852888689511
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0136308999999999883199179983302221288998--62799999998676540698556787679998059988
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 994 ~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
+|+|++++.++.+|..|+..+||||||||||.++++|... +......+++++|+..++|+... .+|+||||||+|+
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNrpd 298 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--KNIKIIMATNRLD 298 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESCSS
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEECCCCHH
T ss_conf 33546899999999999870994676533411115778889997689999999999960433888--8757881269814
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98499981--0354524789997899999999995222589012999999837993999999999998542699998999
Q 000925 1072 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1149 (1222)
Q Consensus 1072 ~Ld~aLlr--RFd~~I~I~lPd~eeR~eILk~lL~k~~l~~didl~~LA~~TeGySg~DL~~Lv~~Aa~~aireil~~~~ 1149 (1222)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|.+|++.++++
T Consensus 299 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~------ 372 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE------ 372 (405)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred HCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 48996728776766997699699999999999855999996579999998779999999999999999999986------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 9999998511599999886655545399999999981556211
Q 000925 1150 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1192 (1222)
Q Consensus 1150 ~e~~la~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~ 1192 (1222)
....++++||..|++++.+...+
T Consensus 373 --------------------~~~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 373 --------------------RRIHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp --------------------TCSBCCHHHHHHHHHHHHHHHTC
T ss_pred --------------------CCCCCCHHHHHHHHHHHHCCCCC
T ss_conf --------------------99875999999999998572655
No 4
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=374.40 Aligned_cols=288 Identities=37% Similarity=0.585 Sum_probs=254.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 88773112583999999999988202682555118777889662477799885999999999991993999966631100
Q 000925 915 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 994 (1222)
Q Consensus 915 ~~~tfddI~Gle~vk~~L~e~I~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkAIA~elg~pfi~I~~seL~s~ 994 (1222)
+.++|+||+|++++++.|++.+.+|+++|++|.+.+ ..||+|||||||||||||+||+++|++++.+|+.++++++.++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g-~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCC-CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHCC
T ss_conf 999903514999999999999998751989886358-9999758977989998899999999971983999973795433
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 13630899999999988319917998330222128899862799999998676540698556787679998059988984
Q 000925 995 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1074 (1222)
Q Consensus 995 ~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1074 (1222)
|.|++++.++.+|..|++++|+||||||||.+++.+.... .+..++++++|+..++++... .+|+||++||+++.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTSC
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCHHHCC
T ss_conf 3167899999999999972992999851002334457788-739999999999997466666--9879999669803269
Q ss_pred HHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99981--0354524789997899999999995222589012999999837993999999999998542699998999999
Q 000925 1075 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1152 (1222)
Q Consensus 1075 ~aLlr--RFd~~I~I~lPd~eeR~eILk~lL~k~~l~~didl~~LA~~TeGySg~DL~~Lv~~Aa~~aireil~~~~~e~ 1152 (1222)
++++| ||++.|++++|+.++|.+||+.++++..+..++++..||..|+||+++||..+|.+|++.++++........
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~- 433 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE- 433 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT-
T ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC-
T ss_conf 8885786361688668979899999999985689988643899999756899899999999999999998414512000-
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 999851159999988665554539999999998155621111110024589996338876444
Q 000925 1153 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRKR 1215 (1222)
Q Consensus 1153 ~la~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~WnDIgG~~~~Rkk 1215 (1222)
.............++++||..|+..++|+...+.....+.+.|+||+|++.+|+.
T Consensus 434 --------~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~ 488 (806)
T 3cf2_A 434 --------DETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488 (806)
T ss_dssp --------CCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHH
T ss_pred --------CCCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHH
T ss_conf --------1332045522556519999999972878311234445788788881788999999
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=367.49 Aligned_cols=251 Identities=35% Similarity=0.620 Sum_probs=228.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98877311258399999999998820268255511877788966247779988599999999999199399996663110
Q 000925 914 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 914 e~~~tfddI~Gle~vk~~L~e~I~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkAIA~elg~pfi~I~~seL~s 993 (1222)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ .|++|+|||||||||||++|+|+|++++++|+.++++++.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred CCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHH
T ss_conf 89986005576999999999999998769999986799-97778844889996399999999998599879988799531
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 01363089999999998831991799833022212889986--2799999998676540698556787679998059988
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 994 ~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
+|+|++++.++.+|..|+..+||||||||+|.+++.|.... ......+++++|+..++++... .+|+||||||+++
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNrpd 332 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNKIE 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESCST
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCHH
T ss_conf 44766999999999999865991898761222036677888776589999999999972476788--9979999579805
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98499981--0354524789997899999999995222589012999999837993999999999998542699998999
Q 000925 1072 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1149 (1222)
Q Consensus 1072 ~Ld~aLlr--RFd~~I~I~lPd~eeR~eILk~lL~k~~l~~didl~~LA~~TeGySg~DL~~Lv~~Aa~~aireil~~~~ 1149 (1222)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|.+|++.++++
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~------ 406 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE------ 406 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred HCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 55998864886027998089699999999999964899997679999997679998999999999999999984------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99999985115999998866555453999999999815562111
Q 000925 1150 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1193 (1222)
Q Consensus 1150 ~e~~la~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e 1193 (1222)
....++++||..|++++.++...+
T Consensus 407 --------------------~~~~It~eDf~~Al~rv~~~~~~e 430 (437)
T 4b4t_I 407 --------------------RRMQVTAEDFKQAKERVMKNKVEE 430 (437)
T ss_dssp --------------------TCSCBCHHHHHHHHHHHHHHHCCC
T ss_pred --------------------CCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf --------------------899669999999999870798733
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=367.34 Aligned_cols=253 Identities=32% Similarity=0.558 Sum_probs=231.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99887731125839999999999882026825551187778896624777998859999999999919939999666311
Q 000925 913 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 992 (1222)
Q Consensus 913 ~e~~~tfddI~Gle~vk~~L~e~I~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkAIA~elg~pfi~I~~seL~ 992 (1222)
..+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ .|++|+|||||||||||++|+|+|++++++|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 897998676095799999999999999749999986799-9887268779499988999999999959988998644643
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
Q ss_conf 0013630899999999988319917998330222128899862--79999999867654069855678767999805998
Q 000925 993 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1070 (1222)
Q Consensus 993 s~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~~~--~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p 1070 (1222)
++|+|++++.++.+|..|+..+||||||||+|.+++.|..... .....+++++|+..++++... .+|+||||||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSC
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCC
T ss_conf 134563899999999999861990896033256652257788887469999999999971366888--998999948992
Q ss_pred CCCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 898499981--035452478999789999999999522258901299999983799399999999999854269999899
Q 000925 1071 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1148 (1222)
Q Consensus 1071 ~~Ld~aLlr--RFd~~I~I~lPd~eeR~eILk~lL~k~~l~~didl~~LA~~TeGySg~DL~~Lv~~Aa~~aireil~~~ 1148 (1222)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|.+|++.++++.
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~---- 406 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG---- 406 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred HHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
T ss_conf 2339967157740389980895999999999998568999876799999986899899999999999999999869----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999851159999988665554539999999998155621111
Q 000925 1149 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 1194 (1222)
Q Consensus 1149 ~~e~~la~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~ 1194 (1222)
...++++||..|+++++|+.++..
T Consensus 407 ----------------------~~~i~~~Df~~Al~~v~~~~~~~i 430 (434)
T 4b4t_M 407 ----------------------QSSVKHEDFVEGISEVQARKSKSV 430 (434)
T ss_dssp ----------------------CSSBCHHHHHHHHHSCSSSCCCCC
T ss_pred ----------------------CCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf ----------------------987699999999999737777573
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=366.52 Aligned_cols=261 Identities=32% Similarity=0.564 Sum_probs=234.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98877311258399999999998820268255511877788966247779988599999999999199399996663110
Q 000925 914 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 914 e~~~tfddI~Gle~vk~~L~e~I~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkAIA~elg~pfi~I~~seL~s 993 (1222)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.+ ..|++|+|||||||||||++|++||++++++|+.++++++.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G-i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG-IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHC
T ss_conf 9999878854599999999999998842999998779-999981476489998099999999844689869988699502
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 01363089999999998831991799833022212889986--2799999998676540698556787679998059988
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 994 ~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
+|+|++++.++.+|..|+..+||||||||+|.+++.|.... ......+++++++..+++.... .+|+||+|||+++
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrpd 359 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRPN 359 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCTT
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEECCCCCC
T ss_conf 66778999999999998761784675223211013556767786278999999999986555788--8379882878931
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98499981--0354524789997899999999995222589012999999837993999999999998542699998999
Q 000925 1072 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1149 (1222)
Q Consensus 1072 ~Ld~aLlr--RFd~~I~I~lPd~eeR~eILk~lL~k~~l~~didl~~LA~~TeGySg~DL~~Lv~~Aa~~aireil~~~~ 1149 (1222)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|.+|++.++++.
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~----- 434 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR----- 434 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT-----
T ss_pred CCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-----
T ss_conf 179546366655079983896999999999998548999877799999977799999999999999999999838-----
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 9999998511599999886655545399999999981556211111100245899
Q 000925 1150 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWN 1204 (1222)
Q Consensus 1150 ~e~~la~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~Wn 1204 (1222)
...++++||..|++++.++..+. .....+.+||
T Consensus 435 ---------------------~~~it~~Df~~Al~kV~~g~~k~-s~~~~y~~~n 467 (467)
T 4b4t_H 435 ---------------------RKVATEKDFLKAVDKVISGYKKF-SSTSRYMQYN 467 (467)
T ss_dssp ---------------------CSSBCHHHHHHHHHHHHHHHCC------------
T ss_pred ---------------------CCCCCHHHHHHHHHHHHCCCCCC-HHHHHHHHHC
T ss_conf ---------------------87669999999999996474561-2578998619
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=363.65 Aligned_cols=251 Identities=37% Similarity=0.647 Sum_probs=228.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98877311258399999999998820268255511877788966247779988599999999999199399996663110
Q 000925 914 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 914 e~~~tfddI~Gle~vk~~L~e~I~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkAIA~elg~pfi~I~~seL~s 993 (1222)
.+.++|+||+|++++++.|++.+.+|+.+|++|.+.++ .|++|+|||||||||||++|++||++++++|+.++++++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHCC
T ss_conf 99989667178599999999999998749999986798-97876999899998499999999998599989984146205
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 01363089999999998831991799833022212889986--2799999998676540698556787679998059988
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 994 ~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
+|.|++++.++.+|..|+.++||||||||+|.++++|...+ ......+++++|+..++|+... .+|+||+|||+|+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCCH
T ss_conf 52017899999999999863896464204433333334478875368999999999983466677--9869999339903
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98499981--0354524789997899999999995222589012999999837993999999999998542699998999
Q 000925 1072 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1149 (1222)
Q Consensus 1072 ~Ld~aLlr--RFd~~I~I~lPd~eeR~eILk~lL~k~~l~~didl~~LA~~TeGySg~DL~~Lv~~Aa~~aireil~~~~ 1149 (1222)
.||++++| ||++.|+|++|+.++|.+||+.++.+.....++++..||..|+||+|+||.++|.+|++.++++
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~------ 405 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD------ 405 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred HHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 31897827771020013599699999999999865899986458999997689999999999999999999986------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99999985115999998866555453999999999815562111
Q 000925 1150 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1193 (1222)
Q Consensus 1150 ~e~~la~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e 1193 (1222)
....|+++||..|++++.++...+
T Consensus 406 --------------------~~~~i~~~d~~~Al~~v~~~~k~e 429 (437)
T 4b4t_L 406 --------------------DRDHINPDDLMKAVRKVAEVKKLE 429 (437)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHHHTCC--
T ss_pred --------------------CCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf --------------------998779999999999987503701
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=351.57 Aligned_cols=250 Identities=35% Similarity=0.550 Sum_probs=225.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98877311258399999999998820268255511877788966247779988599999999999199399996663110
Q 000925 914 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 993 (1222)
Q Consensus 914 e~~~tfddI~Gle~vk~~L~e~I~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkAIA~elg~pfi~I~~seL~s 993 (1222)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ .|++|+|||||||||||++|+|+|++++++|+.++++++.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHHC
T ss_conf 99998888516999999999999998739999986799-98865888898998889999999998679969993304431
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0136308999999999883199179983302221288998--62799999998676540698556787679998059988
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1071 (1222)
Q Consensus 994 ~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1071 (1222)
+|+|++++.++.+|..|+..+||||||||+|.+++.|... .......+++++|+..++|+... .+|+||||||+++
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRAD 322 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCSS
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCHH
T ss_conf 45460599999999999973997463002243303556787888718999999999984387877--9979999619815
Q ss_pred CCCHHHHH--CCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98499981--035452478-999789999999999522258901299999983799399999999999854269999899
Q 000925 1072 DLDEAVVR--RLPRRLMVN-LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1148 (1222)
Q Consensus 1072 ~Ld~aLlr--RFd~~I~I~-lPd~eeR~eILk~lL~k~~l~~didl~~LA~~TeGySg~DL~~Lv~~Aa~~aireil~~~ 1148 (1222)
.||++++| ||++.|+++ +|+.++|..||+.++++..+..++++..||..|+||+|+||.++|++|++.++++.
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~---- 398 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN---- 398 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT----
T ss_pred HCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
T ss_conf 5696663687515999819999999999999998557999963589999977799889999999999999999879----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCCC
Q ss_conf 99999998511599999886655545399999999981-556211
Q 000925 1149 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV-CASVSS 1192 (1222)
Q Consensus 1149 ~~e~~la~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~kv-~pS~s~ 1192 (1222)
...++++||..|+.++ .++.+.
T Consensus 399 ----------------------~~~i~~~d~~~A~~~~~~~~~~~ 421 (428)
T 4b4t_K 399 ----------------------RYVILQSDLEEAYATQVKTDNTV 421 (428)
T ss_dssp ----------------------CSSBCHHHHHHHHHHHSCSCCCS
T ss_pred ----------------------CCCCCHHHHHHHHHHHHCCCCCC
T ss_conf ----------------------98779999999999761766895
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=312.50 Aligned_cols=291 Identities=36% Similarity=0.645 Sum_probs=243.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHH-CCCEEEEECCCCCC
Q ss_conf 88773112583999999999988202682555118777889662477799885999999999991-99399996663110
Q 000925 915 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 993 (1222)
Q Consensus 915 ~~~tfddI~Gle~vk~~L~e~I~~pl~~~elf~k~~i~~P~~gILL~GPpGTGKT~LAkAIA~el-g~pfi~I~~seL~s 993 (1222)
+.++|++|+|++.+++.|++.+.+|+.++++|... ..|++++||+||||||||++|+++|+++ +.+|+.++++++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHCC--CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHH
T ss_conf 99998873498999999999999987698977178--8999549998999960999999999980899679987499776
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 01363089999999998831991799833022212889986279999999867654069855678767999805998898
Q 000925 994 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1073 (1222)
Q Consensus 994 ~~~GesEk~Ir~iF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 1073 (1222)
.|.|+.++.++.+|..++..+|+||||||||.+.+.+... ......+++++++..++++... ..+++||++||.++.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEESCTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCC-CCHHHHHHHHHHHHHHHCCCCC-CCCEEEEEECCCCCCC
T ss_conf 4311999999999999986299589960478753556665-3358999999999997434566-8887999966985658
Q ss_pred CHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 499981035452478999789999999999522258-9012999999837993999999999998542699998999999
Q 000925 1074 DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1152 (1222)
Q Consensus 1074 d~aLlrRFd~~I~I~lPd~eeR~eILk~lL~k~~l~-~didl~~LA~~TeGySg~DL~~Lv~~Aa~~aireil~~~~~e~ 1152 (1222)
+++++|||+..+++++|+.++|..||+.++...... .+.++..|+..++||+++||.++|.+|+..++++.+.......
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~ 242 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKK 242 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEE
T ss_pred CHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999316768995796999999999999721788899999999999769999999999999999999999986455554
Q ss_pred HHHHH--------HCCCCC--------------CCC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99985--------115999--------------998-8665554539999999998155621111110024589996338
Q 000925 1153 ALALA--------ENRASP--------------PLY-SSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1209 (1222)
Q Consensus 1153 ~la~~--------e~~~~~--------------~~~-~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~WnDIgG~ 1209 (1222)
..... +....+ .+. ......+|+++||..|+++++||++.+ .+..+.+|++.||.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~--~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 243 VRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEH--DLLKLKKFTEDFGQ 320 (322)
T ss_dssp EEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHH--HHHHHHHHHHTTCS
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHCC
T ss_conf 2144333310000000255654441000012123650003578708999999998679999999--99999999999746
Q ss_pred CC
Q ss_conf 87
Q 000925 1210 GG 1211 (1222)
Q Consensus 1210 ~~ 1211 (1222)
+|
T Consensus 321 ~~ 322 (322)
T 1xwi_A 321 EG 322 (322)
T ss_dssp CC
T ss_pred CC
T ss_conf 99
Done!