Query 000926
Match_columns 1222
No_of_seqs 163 out of 229
Neff 3.0
Searched_HMMs 29240
Date Tue Mar 26 16:47:47 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000926.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_694-698//hhsearch_pdb/000926hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 74.0 0.0 27 471-497 578-604 (1184)
2 1i84_S Smooth muscle myosin he 1.0 1 1 60.8 10.9 11 504-514 519-529 (1184)
3 3na7_A HP0958; flagellar bioge 1.0 1 1 49.9 23.8 91 686-779 16-106 (256)
4 1c1g_A Tropomyosin; contractIl 1.0 1 1 48.3 35.1 71 663-733 2-72 (284)
5 3na7_A HP0958; flagellar bioge 1.0 1 1 44.2 23.5 62 671-732 15-76 (256)
6 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 42.8 20.8 12 503-514 490-501 (1080)
7 1c1g_A Tropomyosin; contractIl 1.0 1 1 42.6 34.4 56 664-719 17-72 (284)
8 3vkg_A Dynein heavy chain, cyt 1.0 1 1 35.2 23.8 23 20-42 1015-1039(3245)
9 3oja_B Anopheles plasmodium-re 1.0 1 1 33.9 13.9 26 806-831 532-557 (597)
10 3vkg_A Dynein heavy chain, cyt 1.0 1 1 32.2 29.4 11 1077-1087 2369-2379(3245)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=73.99 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 333433579987753216775310123
Q 000926 471 ENVGIQHAGGEKDDHRSKELEENMETE 497 (1222)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (1222)
...+|.|-.|.-.-....-|+.|+.+-
T Consensus 578 ~~F~i~Hyag~V~Y~~~gfl~kN~d~l 604 (1184)
T 1i84_S 578 TEFCILHYAGKVTYNASAWLTKNMDPL 604 (1184)
T ss_dssp CEEEEECSSCEEEEECTTHHHHHHCCC
T ss_pred CCEEEECCCCEEEECCCCCHHHCCCCC
T ss_conf 927998897469862688134225732
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=60.82 Aligned_cols=11 Identities=36% Similarity=0.570 Sum_probs=5.0
Q ss_pred CCHHHHHHHHH
Q ss_conf 71258998643
Q 000926 504 DDLVCKEVLEN 514 (1222)
Q Consensus 504 ~~~~~~~~~~~ 514 (1222)
|.-.|+..++.
T Consensus 519 dn~~~~~lie~ 529 (1184)
T 1i84_S 519 DLQPCIELIER 529 (1184)
T ss_dssp CCHHHHHTTSC
T ss_pred CCHHHHHHHHC
T ss_conf 82899999837
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=49.85 Aligned_cols=91 Identities=13% Similarity=0.281 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 99967999999999999999999999999999999999999999999730059997879999997778862088893999
Q 000926 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEE 765 (1222)
Q Consensus 686 I~aELkalRaERdELiEQLKeLReE~KqlReeidEKIKELesLQeaLnKLRnAKSVEEIDakIk~LE~RIQTeSLSLeEE 765 (1222)
|...+..++.++..+-.++..+..+...++..+.....+++.+...+.++. ..++++..+|.+.+.++...+ +-.|=
T Consensus 16 lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e--~~i~~~~~ri~~~~~~l~~v~-~~kE~ 92 (256)
T 3na7_A 16 LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNE--QTLQDTNAKIASIQKKMSEIK-SEREL 92 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCS-SSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCC-CHHHH
T ss_conf 999999999999875899999999999999999999999999999999999--789999999999999987258-99999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q 000926 766 KQIIREIKQLKQRR 779 (1222)
Q Consensus 766 KKLIKEIKQLKKsR 779 (1222)
.-+.+||..++...
T Consensus 93 ~aL~kEie~~~~~i 106 (256)
T 3na7_A 93 RSLNIEEDIAKERS 106 (256)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=48.27 Aligned_cols=71 Identities=8% Similarity=0.233 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999699999997999999679999999999999999999999999999999999999999997
Q 000926 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (1222)
Q Consensus 663 EeLKAKIdeLeKEIeELKqkRdeI~aELkalRaERdELiEQLKeLReE~KqlReeidEKIKELesLQeaLn 733 (1222)
+.|+.++..+..++..+......+...+..++.....+...+..+......++..+......+..++..+.
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLE 72 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 37899999988768889999999999999999889888999999999999999999999999999999999
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=44.16 Aligned_cols=62 Identities=8% Similarity=0.125 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99969999999799999967999999999999999999999999999999999999999999
Q 000926 671 AAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (1222)
Q Consensus 671 eLeKEIeELKqkRdeI~aELkalRaERdELiEQLKeLReE~KqlReeidEKIKELesLQeaL 732 (1222)
.++.+|..+...+..+-.++..+..+...+..++..+..+...+...+...-.++..++..+
T Consensus 15 ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri 76 (256)
T 3na7_A 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKI 76 (256)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998758999999999999999999999999999999999997899999999
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=42.81 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=6.0
Q ss_pred CCCHHHHHHHHH
Q ss_conf 771258998643
Q 000926 503 SDDLVCKEVLEN 514 (1222)
Q Consensus 503 ~~~~~~~~~~~~ 514 (1222)
.|.-.|+..++.
T Consensus 490 ~dn~~~idlie~ 501 (1080)
T 2dfs_A 490 YDNQPCINLIEA 501 (1080)
T ss_dssp CCCHHHHHHHHS
T ss_pred CCCHHHHHHHHC
T ss_conf 565889998836
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=42.60 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999996999999979999996799999999999999999999999999999
Q 000926 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLK 719 (1222)
Q Consensus 664 eLKAKIdeLeKEIeELKqkRdeI~aELkalRaERdELiEQLKeLReE~KqlReeid 719 (1222)
.+...++.+...+..+......+...+...+.....+...+..+......++..+.
T Consensus 17 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (284)
T 1c1g_A 17 NALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLE 72 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999889888999999999999999999999999999999999
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=35.16 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCC--EEEEEECCCCC
Q ss_conf 999987545561--27999605777
Q 000926 20 DLPNGNAIADSS--CVFVEVSGNDV 42 (1222)
Q Consensus 20 ~~~~~~~~~~~~--~~~~~~~~~~~ 42 (1222)
-||||.-|.=+. ..+.||.--.+
T Consensus 1015 tL~nGErI~l~~~~~liFEv~dL~~ 1039 (3245)
T 3vkg_A 1015 TLPNGERLALPNNVRVMFEVQDLKY 1039 (3245)
T ss_dssp CCTTSCCEECCTTEEEEEEESCCTT
T ss_pred ECCCCCEEECCCCCEEEEEECCCCC
T ss_conf 3589884436998779998152021
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=33.89 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999
Q 000926 806 MKFLRKEADSLRENVIKAEAATQAVK 831 (1222)
Q Consensus 806 IKaLKKEIDELRkKLkkLkaElKAIk 831 (1222)
+..+.++++.+++++..++..++..+
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~ 557 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKR 557 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 55420111367766488999873101
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=32.16 Aligned_cols=11 Identities=27% Similarity=0.329 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q ss_conf 99998889999
Q 000926 1077 ALERKKRIAEK 1087 (1222)
Q Consensus 1077 a~eRKkk~AeK 1087 (1222)
.++.-|..|.-
T Consensus 2369 ~L~~sK~~s~e 2379 (3245)
T 3vkg_A 2369 TLETLKKETTE 2379 (3245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
Done!