Query 000927
Match_columns 1222
No_of_seqs 42 out of 44
Neff 3.3
Searched_HMMs 46136
Date Tue Apr 2 00:56:12 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 99.5 1.5E-07 3.3E-12 115.2 66.7 14 90-103 148-161 (880)
2 KOG0161 Myosin class II heavy 99.4 4E-06 8.7E-11 109.9 76.9 555 196-772 907-1531(1930)
3 PRK02224 chromosome segregatio 99.4 6.6E-06 1.4E-10 101.0 72.1 93 156-252 148-240 (880)
4 TIGR00606 rad50 rad50. This fa 99.3 2E-05 4.3E-10 101.7 77.1 75 175-249 397-471 (1311)
5 TIGR00606 rad50 rad50. This fa 99.3 5E-05 1.1E-09 98.1 69.7 87 214-301 573-659 (1311)
6 KOG0161 Myosin class II heavy 99.1 0.00028 6.2E-09 93.3 80.6 638 95-773 1038-1708(1930)
7 TIGR02168 SMC_prok_B chromosom 99.1 0.00017 3.7E-09 89.4 82.1 49 725-773 993-1042(1179)
8 PRK03918 chromosome segregatio 99.1 0.00022 4.7E-09 87.7 69.2 46 257-302 242-287 (880)
9 TIGR02168 SMC_prok_B chromosom 99.1 0.00025 5.3E-09 88.0 80.2 8 75-82 126-133 (1179)
10 PRK01156 chromosome segregatio 99.0 0.0003 6.5E-09 87.3 70.9 36 157-192 149-186 (895)
11 TIGR02169 SMC_prok_A chromosom 99.0 0.00033 7.2E-09 87.4 80.5 72 702-773 956-1039(1164)
12 PRK03918 chromosome segregatio 99.0 0.00034 7.3E-09 86.1 70.1 35 711-745 666-700 (880)
13 PF12128 DUF3584: Protein of u 98.9 0.0011 2.3E-08 85.6 68.3 206 526-735 594-809 (1201)
14 TIGR02169 SMC_prok_A chromosom 98.9 0.00087 1.9E-08 83.8 74.4 12 89-100 151-162 (1164)
15 PRK01156 chromosome segregatio 98.9 0.0009 1.9E-08 83.2 65.4 46 727-772 683-728 (895)
16 COG1196 Smc Chromosome segrega 98.9 0.0015 3.3E-08 83.9 77.3 95 100-196 215-312 (1163)
17 KOG4674 Uncharacterized conser 98.5 0.016 3.5E-07 76.8 70.4 451 90-575 864-1382(1822)
18 COG0419 SbcC ATPase involved i 98.4 0.016 3.5E-07 73.0 75.1 99 224-326 273-378 (908)
19 COG1196 Smc Chromosome segrega 98.4 0.026 5.5E-07 73.1 72.2 72 71-142 122-216 (1163)
20 PF07888 CALCOCO1: Calcium bin 98.3 0.024 5.2E-07 68.4 48.3 43 731-773 409-451 (546)
21 PF10174 Cast: RIM-binding pro 98.2 0.051 1.1E-06 68.1 65.1 471 181-675 5-532 (775)
22 PF07888 CALCOCO1: Calcium bin 98.0 0.073 1.6E-06 64.4 40.9 97 534-634 352-448 (546)
23 COG0419 SbcC ATPase involved i 98.0 0.12 2.5E-06 65.5 73.2 13 159-171 156-168 (908)
24 PF10174 Cast: RIM-binding pro 97.8 0.26 5.6E-06 62.1 64.6 460 94-596 70-616 (775)
25 PF01576 Myosin_tail_1: Myosin 97.7 6.7E-06 1.4E-10 102.2 0.0 510 152-745 40-566 (859)
26 PF12128 DUF3584: Protein of u 97.7 0.43 9.3E-06 62.6 72.9 89 537-625 676-769 (1201)
27 KOG1029 Endocytic adaptor prot 97.7 0.13 2.9E-06 63.8 33.8 209 402-634 327-566 (1118)
28 PF01576 Myosin_tail_1: Myosin 97.3 5.7E-05 1.2E-09 94.2 0.0 308 91-424 201-518 (859)
29 KOG4674 Uncharacterized conser 97.2 1.8 4E-05 58.6 71.7 573 94-702 575-1252(1822)
30 KOG0250 DNA repair protein RAD 97.1 1.5 3.3E-05 56.7 35.4 104 492-595 360-464 (1074)
31 KOG0018 Structural maintenance 97.1 1.3 2.8E-05 57.2 33.9 107 527-636 288-400 (1141)
32 PRK04863 mukB cell division pr 97.1 2.5 5.4E-05 57.1 42.2 108 218-326 293-400 (1486)
33 PRK11637 AmiB activator; Provi 96.9 0.91 2E-05 53.0 29.0 27 638-664 158-184 (428)
34 PRK11637 AmiB activator; Provi 96.9 0.44 9.4E-06 55.6 26.2 47 344-390 89-135 (428)
35 PF00261 Tropomyosin: Tropomyo 96.9 0.35 7.5E-06 52.6 23.6 166 210-378 21-189 (237)
36 PRK12704 phosphodiesterase; Pr 96.8 0.074 1.6E-06 64.0 19.4 80 397-483 59-138 (520)
37 KOG0996 Structural maintenance 96.8 3.4 7.4E-05 54.1 42.5 136 493-628 475-612 (1293)
38 PF00261 Tropomyosin: Tropomyo 96.5 1.5 3.2E-05 47.8 25.6 108 213-327 3-110 (237)
39 TIGR03319 YmdA_YtgF conserved 96.4 0.15 3.2E-06 61.5 18.9 76 397-479 53-128 (514)
40 PF00038 Filament: Intermediat 96.4 2.2 4.8E-05 47.3 34.1 248 245-546 53-304 (312)
41 PRK00106 hypothetical protein; 96.4 0.43 9.2E-06 58.1 22.1 76 397-479 74-149 (535)
42 KOG1029 Endocytic adaptor prot 96.4 4.8 0.0001 51.0 33.5 252 489-758 319-597 (1118)
43 KOG4643 Uncharacterized coiled 96.3 6 0.00013 51.3 41.9 224 540-774 316-558 (1195)
44 PF08317 Spc7: Spc7 kinetochor 96.2 1 2.3E-05 51.1 22.7 166 443-614 126-291 (325)
45 PHA02562 46 endonuclease subun 95.9 5.6 0.00012 47.4 35.4 46 540-585 359-404 (562)
46 PRK12704 phosphodiesterase; Pr 95.8 0.5 1.1E-05 57.2 19.1 123 408-553 59-183 (520)
47 KOG0933 Structural maintenance 95.8 10 0.00022 49.4 39.3 52 339-393 696-747 (1174)
48 TIGR03319 YmdA_YtgF conserved 95.7 0.61 1.3E-05 56.4 19.1 62 411-475 56-117 (514)
49 PF00038 Filament: Intermediat 95.6 4.9 0.00011 44.7 34.6 186 488-674 2-201 (312)
50 PRK00106 hypothetical protein; 95.6 2 4.4E-05 52.5 23.1 24 532-555 177-201 (535)
51 KOG0977 Nuclear envelope prote 95.5 8.8 0.00019 47.3 27.5 303 185-546 80-384 (546)
52 PF12072 DUF3552: Domain of un 95.5 2.2 4.8E-05 45.6 20.4 70 403-472 61-130 (201)
53 KOG0964 Structural maintenance 95.3 14 0.00031 48.0 37.1 296 255-567 175-488 (1200)
54 PHA02562 46 endonuclease subun 95.0 11 0.00023 45.1 33.4 99 499-597 304-402 (562)
55 KOG0612 Rho-associated, coiled 94.9 20 0.00042 47.8 46.8 71 450-520 621-693 (1317)
56 KOG0018 Structural maintenance 94.8 20 0.00042 47.2 49.9 214 539-767 652-898 (1141)
57 PF05483 SCP-1: Synaptonemal c 94.8 16 0.00035 46.1 68.6 309 258-585 231-566 (786)
58 PF13851 GAS: Growth-arrest sp 94.6 7.8 0.00017 41.9 21.7 144 527-686 22-168 (201)
59 PF10146 zf-C4H2: Zinc finger- 94.4 1.9 4.2E-05 47.6 16.8 108 675-796 4-111 (230)
60 PRK04863 mukB cell division pr 94.3 30 0.00066 47.3 48.0 30 380-409 505-534 (1486)
61 PF05701 WEMBL: Weak chloropla 93.5 24 0.00051 43.2 47.1 56 470-525 282-337 (522)
62 PF05557 MAD: Mitotic checkpoi 93.4 0.59 1.3E-05 58.1 12.2 21 667-687 619-639 (722)
63 TIGR03185 DNA_S_dndD DNA sulfu 92.9 31 0.00067 42.9 34.8 45 705-749 422-466 (650)
64 PF09731 Mitofilin: Mitochondr 92.6 21 0.00044 43.6 23.0 47 762-810 429-475 (582)
65 KOG0612 Rho-associated, coiled 92.4 52 0.0011 44.2 52.2 29 732-761 1015-1043(1317)
66 KOG0977 Nuclear envelope prote 92.2 38 0.00083 42.1 37.3 310 374-733 47-378 (546)
67 PF05557 MAD: Mitotic checkpoi 92.1 1.7 3.6E-05 54.3 13.6 42 330-371 284-325 (722)
68 PRK12705 hypothetical protein; 91.9 10 0.00022 46.4 19.2 59 405-470 62-120 (508)
69 COG1340 Uncharacterized archae 91.9 29 0.00063 40.2 32.9 53 441-493 30-82 (294)
70 PF09728 Taxilin: Myosin-like 91.4 32 0.0007 39.6 35.8 66 690-755 230-309 (309)
71 KOG0962 DNA repair protein RAD 90.8 78 0.0017 43.0 66.5 85 651-747 993-1077(1294)
72 PF09726 Macoilin: Transmembra 90.7 59 0.0013 41.5 27.1 54 404-465 543-597 (697)
73 PF12072 DUF3552: Domain of un 89.9 26 0.00057 37.7 18.1 79 239-325 51-129 (201)
74 smart00787 Spc7 Spc7 kinetocho 89.5 47 0.001 38.5 22.2 166 443-614 121-286 (312)
75 PF09755 DUF2046: Uncharacteri 88.9 54 0.0012 38.3 25.6 159 537-719 39-200 (310)
76 PF05701 WEMBL: Weak chloropla 86.7 88 0.0019 38.4 49.6 303 449-777 98-410 (522)
77 PF05667 DUF812: Protein of un 86.7 98 0.0021 39.0 25.5 54 483-536 491-544 (594)
78 PF08317 Spc7: Spc7 kinetochor 86.2 71 0.0015 36.8 20.2 43 487-529 206-248 (325)
79 PRK09039 hypothetical protein; 86.1 76 0.0017 37.1 21.5 18 359-376 47-64 (343)
80 PRK10246 exonuclease subunit S 85.9 1.4E+02 0.0029 39.8 73.1 51 154-204 164-223 (1047)
81 COG1340 Uncharacterized archae 85.8 77 0.0017 36.9 27.9 23 663-685 133-155 (294)
82 PRK12705 hypothetical protein; 85.5 98 0.0021 38.4 21.3 60 397-460 65-124 (508)
83 PF05262 Borrelia_P83: Borreli 85.2 43 0.00094 41.2 18.1 70 452-521 189-258 (489)
84 PF13863 DUF4200: Domain of un 85.1 29 0.00063 34.0 13.8 92 411-512 12-103 (126)
85 KOG0995 Centromere-associated 84.9 1.2E+02 0.0025 38.2 40.3 9 198-206 160-168 (581)
86 COG1579 Zn-ribbon protein, pos 84.9 75 0.0016 36.0 22.0 72 381-457 11-82 (239)
87 KOG0994 Extracellular matrix g 84.6 1.7E+02 0.0036 39.8 31.0 130 346-480 1607-1742(1758)
88 KOG4673 Transcription factor T 84.6 1.3E+02 0.0029 38.6 38.2 57 703-759 865-921 (961)
89 PRK09039 hypothetical protein; 84.5 27 0.00059 40.7 15.5 113 163-279 65-177 (343)
90 COG1579 Zn-ribbon protein, pos 82.8 91 0.002 35.3 23.5 89 553-645 96-184 (239)
91 PF12718 Tropomyosin_1: Tropom 82.3 54 0.0012 34.0 15.0 94 229-333 11-104 (143)
92 KOG0250 DNA repair protein RAD 82.0 2E+02 0.0043 38.7 58.0 108 198-305 296-404 (1074)
93 PF00769 ERM: Ezrin/radixin/mo 79.7 67 0.0015 35.9 15.7 79 490-568 12-90 (246)
94 COG4942 Membrane-bound metallo 79.5 1.6E+02 0.0034 36.0 30.1 63 503-568 184-246 (420)
95 KOG0976 Rho/Rac1-interacting s 79.2 2.2E+02 0.0047 37.4 52.0 109 356-466 97-208 (1265)
96 KOG0579 Ste20-like serine/thre 79.1 2.1E+02 0.0045 37.1 41.6 290 381-695 809-1165(1187)
97 KOG4643 Uncharacterized coiled 78.0 2.6E+02 0.0056 37.6 51.1 130 443-572 413-549 (1195)
98 KOG0804 Cytoplasmic Zn-finger 77.5 76 0.0017 38.8 16.0 109 539-670 347-455 (493)
99 TIGR01005 eps_transp_fam exopo 77.2 39 0.00084 42.5 14.5 42 195-236 185-226 (754)
100 PF15066 CAGE1: Cancer-associa 77.1 2E+02 0.0042 35.7 22.3 85 523-611 406-490 (527)
101 PF06818 Fez1: Fez1; InterPro 76.3 92 0.002 34.6 15.1 46 616-661 144-193 (202)
102 PF04111 APG6: Autophagy prote 75.8 54 0.0012 37.9 14.0 36 525-560 99-134 (314)
103 PF11559 ADIP: Afadin- and alp 74.7 1E+02 0.0023 31.4 15.7 74 445-521 73-146 (151)
104 PF10473 CENP-F_leu_zip: Leuci 74.4 1.2E+02 0.0026 31.9 19.1 88 537-636 29-116 (140)
105 PF04111 APG6: Autophagy prote 74.1 48 0.001 38.3 13.1 13 733-745 167-179 (314)
106 PRK04778 septation ring format 73.9 2.4E+02 0.0051 35.1 44.6 277 451-773 222-520 (569)
107 PRK04778 septation ring format 73.8 2.4E+02 0.0051 35.1 45.0 61 534-594 350-410 (569)
108 TIGR03185 DNA_S_dndD DNA sulfu 72.9 2.6E+02 0.0056 35.2 39.5 56 353-413 232-287 (650)
109 PF09325 Vps5: Vps5 C terminal 70.6 1.3E+02 0.0029 32.0 14.6 171 97-285 47-236 (236)
110 PF13514 AAA_27: AAA domain 70.0 3.8E+02 0.0083 35.9 44.9 23 745-769 1024-1046(1111)
111 KOG0995 Centromere-associated 70.0 3.1E+02 0.0067 34.8 45.1 89 472-571 290-378 (581)
112 COG4026 Uncharacterized protei 68.6 59 0.0013 36.7 11.6 83 527-613 118-205 (290)
113 PF02841 GBP_C: Guanylate-bind 67.7 2.2E+02 0.0048 32.3 16.3 15 170-184 38-52 (297)
114 PF04094 DUF390: Protein of un 66.4 4E+02 0.0087 34.8 19.2 89 288-379 481-572 (828)
115 TIGR01843 type_I_hlyD type I s 66.4 2.4E+02 0.0053 32.3 19.0 52 246-297 130-181 (423)
116 PF10146 zf-C4H2: Zinc finger- 66.2 1.4E+02 0.003 33.6 14.0 90 525-614 8-103 (230)
117 PF09789 DUF2353: Uncharacteri 65.7 2.8E+02 0.0061 32.8 22.9 30 675-704 199-228 (319)
118 PF12126 DUF3583: Protein of u 65.6 2.1E+02 0.0046 33.6 15.5 121 495-626 4-124 (324)
119 PF09787 Golgin_A5: Golgin sub 65.4 3.3E+02 0.0072 33.5 31.7 19 715-733 410-428 (511)
120 KOG1103 Predicted coiled-coil 65.0 3.1E+02 0.0068 33.0 17.9 27 442-468 111-138 (561)
121 COG4942 Membrane-bound metallo 64.4 3.4E+02 0.0074 33.3 30.6 63 521-583 136-198 (420)
122 PF09789 DUF2353: Uncharacteri 62.6 3.2E+02 0.007 32.4 22.2 39 740-778 190-228 (319)
123 PF05622 HOOK: HOOK protein; 62.1 2.6 5.6E-05 52.7 0.0 80 430-510 304-383 (713)
124 COG2433 Uncharacterized conser 62.0 1E+02 0.0022 39.0 13.1 61 523-587 434-494 (652)
125 PF10186 Atg14: UV radiation r 61.3 2.5E+02 0.0055 30.7 18.5 52 421-472 57-108 (302)
126 KOG0976 Rho/Rac1-interacting s 61.3 5.2E+02 0.011 34.3 45.8 336 257-598 145-511 (1265)
127 PF05262 Borrelia_P83: Borreli 60.4 4E+02 0.0086 33.3 17.5 7 498-504 336-342 (489)
128 PF07926 TPR_MLP1_2: TPR/MLP1/ 60.4 2E+02 0.0043 29.2 17.4 96 490-588 17-112 (132)
129 PF14662 CCDC155: Coiled-coil 59.5 2.9E+02 0.0062 30.8 24.6 173 474-666 16-188 (193)
130 PF03904 DUF334: Domain of unk 59.5 3.1E+02 0.0068 31.2 16.1 111 539-655 43-154 (230)
131 TIGR00634 recN DNA repair prot 56.7 4.7E+02 0.01 32.4 21.8 45 688-732 306-350 (563)
132 TIGR01069 mutS2 MutS2 family p 56.5 2.6E+02 0.0056 36.3 15.8 35 480-514 522-556 (771)
133 PF00769 ERM: Ezrin/radixin/mo 56.4 1.6E+02 0.0036 33.0 12.6 61 210-270 4-71 (246)
134 PRK00409 recombination and DNA 55.9 2.4E+02 0.0052 36.6 15.5 79 470-557 517-595 (782)
135 PF05483 SCP-1: Synaptonemal c 55.8 5.9E+02 0.013 33.2 68.3 366 297-716 386-758 (786)
136 TIGR03007 pepcterm_ChnLen poly 55.2 4.4E+02 0.0096 31.6 18.8 32 200-231 157-188 (498)
137 KOG0804 Cytoplasmic Zn-finger 55.1 4E+02 0.0086 33.1 15.9 75 436-513 373-447 (493)
138 PF10473 CENP-F_leu_zip: Leuci 54.0 2.9E+02 0.0063 29.2 16.5 100 279-378 1-100 (140)
139 TIGR01069 mutS2 MutS2 family p 53.9 2.7E+02 0.0059 36.2 15.4 83 471-555 506-588 (771)
140 PF04871 Uso1_p115_C: Uso1 / p 53.3 2.8E+02 0.0061 28.8 14.7 37 519-555 78-114 (136)
141 PTZ00266 NIMA-related protein 52.5 1.7E+02 0.0037 39.3 13.5 17 116-132 90-106 (1021)
142 KOG0971 Microtubule-associated 52.3 7.5E+02 0.016 33.4 35.7 218 274-519 293-519 (1243)
143 PF10186 Atg14: UV radiation r 51.5 3.6E+02 0.0079 29.5 18.8 85 425-509 68-152 (302)
144 KOG0249 LAR-interacting protei 51.3 6.1E+02 0.013 33.3 17.2 59 411-469 96-156 (916)
145 KOG0972 Huntingtin interacting 51.2 3.2E+02 0.007 32.3 13.8 155 379-539 204-372 (384)
146 KOG2129 Uncharacterized conser 51.1 5.7E+02 0.012 31.7 29.0 134 556-689 53-218 (552)
147 PF15066 CAGE1: Cancer-associa 50.3 6.1E+02 0.013 31.8 21.9 41 467-507 388-428 (527)
148 PRK00409 recombination and DNA 50.3 3.6E+02 0.0078 35.1 15.7 106 303-408 489-594 (782)
149 KOG0996 Structural maintenance 49.4 9E+02 0.019 33.5 67.5 151 208-368 416-573 (1293)
150 PF14992 TMCO5: TMCO5 family 49.0 4.5E+02 0.0098 30.8 14.6 93 355-464 4-100 (280)
151 KOG0979 Structural maintenance 47.4 9E+02 0.02 32.9 24.8 100 455-561 244-347 (1072)
152 PF08614 ATG16: Autophagy prot 47.2 2E+02 0.0044 30.8 11.1 77 263-339 70-146 (194)
153 PF03962 Mnd1: Mnd1 family; I 47.0 2.7E+02 0.0058 30.3 11.9 39 492-530 64-102 (188)
154 PF11932 DUF3450: Protein of u 46.9 4.3E+02 0.0093 29.4 13.8 59 546-604 56-114 (251)
155 PLN03188 kinesin-12 family pro 46.6 4.6E+02 0.01 36.2 15.9 26 157-182 1078-1103(1320)
156 PF05622 HOOK: HOOK protein; 46.5 6.6 0.00014 49.2 0.0 20 91-113 126-145 (713)
157 PF09744 Jnk-SapK_ap_N: JNK_SA 46.4 4E+02 0.0087 28.6 13.2 78 428-505 79-157 (158)
158 PF07106 TBPIP: Tat binding pr 45.4 2E+02 0.0044 30.0 10.5 17 535-551 119-135 (169)
159 KOG4403 Cell surface glycoprot 45.0 7.1E+02 0.015 31.0 20.9 18 614-631 246-263 (575)
160 PF03962 Mnd1: Mnd1 family; I 45.0 3E+02 0.0065 29.9 12.0 42 489-531 68-109 (188)
161 KOG3859 Septins (P-loop GTPase 44.2 2.3E+02 0.0049 33.6 11.4 52 443-497 350-401 (406)
162 PF09726 Macoilin: Transmembra 44.2 8.5E+02 0.018 31.7 27.9 89 318-410 423-517 (697)
163 TIGR03017 EpsF chain length de 44.1 6E+02 0.013 29.9 19.9 46 191-236 158-203 (444)
164 KOG4661 Hsp27-ERE-TATA-binding 44.0 3.1E+02 0.0068 34.8 13.0 41 193-233 248-296 (940)
165 PRK15422 septal ring assembly 43.0 1.6E+02 0.0034 28.7 8.4 55 512-566 12-66 (79)
166 KOG1962 B-cell receptor-associ 42.8 1.9E+02 0.0041 32.6 10.2 55 552-617 157-211 (216)
167 PF12037 DUF3523: Domain of un 42.4 6.2E+02 0.013 29.6 23.4 140 494-646 79-218 (276)
168 TIGR02977 phageshock_pspA phag 41.9 5.1E+02 0.011 28.4 15.1 124 72-196 2-137 (219)
169 PRK06800 fliH flagellar assemb 41.4 71 0.0015 35.3 6.6 71 685-765 33-103 (228)
170 PF10168 Nup88: Nuclear pore c 41.3 9.4E+02 0.02 31.4 18.0 161 527-697 549-713 (717)
171 KOG0980 Actin-binding protein 41.3 1E+03 0.023 31.9 31.6 72 619-691 475-549 (980)
172 KOG4657 Uncharacterized conser 41.2 3.7E+02 0.0081 30.8 12.1 69 307-375 49-117 (246)
173 COG3883 Uncharacterized protei 41.0 6.4E+02 0.014 29.4 24.2 59 449-507 152-210 (265)
174 cd07672 F-BAR_PSTPIP2 The F-BA 41.0 5.7E+02 0.012 28.8 21.2 112 537-655 105-216 (240)
175 smart00502 BBC B-Box C-termina 40.7 3.2E+02 0.0069 25.8 12.5 50 627-676 38-87 (127)
176 COG4372 Uncharacterized protei 40.5 7.9E+02 0.017 30.3 20.2 192 174-365 73-280 (499)
177 PF15462 Barttin: Bartter synd 40.3 60 0.0013 35.8 5.9 133 927-1078 79-212 (224)
178 KOG0933 Structural maintenance 39.8 1.2E+03 0.025 32.1 61.4 194 140-335 242-467 (1174)
179 KOG0579 Ste20-like serine/thre 39.6 1E+03 0.022 31.4 32.0 142 529-681 879-1022(1187)
180 PF06818 Fez1: Fez1; InterPro 39.5 5.9E+02 0.013 28.6 16.8 30 536-568 135-164 (202)
181 TIGR03545 conserved hypothetic 39.5 2.5E+02 0.0055 35.2 11.7 28 488-515 210-237 (555)
182 KOG4593 Mitotic checkpoint pro 39.3 1E+03 0.022 31.2 52.0 73 260-337 186-258 (716)
183 PF15070 GOLGA2L5: Putative go 39.1 9.6E+02 0.021 30.8 33.3 251 378-662 12-288 (617)
184 PF09731 Mitofilin: Mitochondr 38.8 8.5E+02 0.018 30.1 25.3 160 337-508 261-423 (582)
185 PRK10869 recombination and rep 37.5 9.2E+02 0.02 30.2 22.9 69 689-757 302-370 (553)
186 PF12240 Angiomotin_C: Angiomo 37.4 4.3E+02 0.0093 29.7 11.7 154 124-317 1-165 (205)
187 KOG0979 Structural maintenance 37.4 1.3E+03 0.027 31.7 26.6 40 726-765 372-411 (1072)
188 PF04156 IncA: IncA protein; 37.2 5.2E+02 0.011 27.2 15.9 6 537-542 107-112 (191)
189 PF13851 GAS: Growth-arrest sp 36.9 6E+02 0.013 27.9 20.3 84 176-266 6-89 (201)
190 PF05700 BCAS2: Breast carcino 36.8 6.2E+02 0.013 28.0 14.0 118 47-192 88-216 (221)
191 PRK15422 septal ring assembly 36.8 4E+02 0.0087 26.1 10.0 58 530-591 6-63 (79)
192 PRK10361 DNA recombination pro 36.5 9.5E+02 0.021 30.1 25.2 130 410-560 64-193 (475)
193 KOG2891 Surface glycoprotein [ 36.3 7.4E+02 0.016 29.3 13.7 93 299-397 345-439 (445)
194 PF06705 SF-assemblin: SF-asse 36.0 6.5E+02 0.014 28.0 29.3 191 484-707 28-218 (247)
195 TIGR00634 recN DNA repair prot 35.9 9.5E+02 0.021 29.9 20.5 33 602-634 349-381 (563)
196 PF10498 IFT57: Intra-flagella 35.1 5.4E+02 0.012 30.8 13.0 67 404-470 225-291 (359)
197 cd07647 F-BAR_PSTPIP The F-BAR 34.9 6.6E+02 0.014 27.8 18.8 48 607-655 168-215 (239)
198 KOG1924 RhoA GTPase effector D 34.8 47 0.001 42.9 4.6 15 662-676 992-1006(1102)
199 KOG3091 Nuclear pore complex, 34.6 8.2E+02 0.018 30.8 14.5 102 349-471 346-447 (508)
200 PRK10884 SH3 domain-containing 34.4 3E+02 0.0065 30.5 10.1 55 288-342 118-172 (206)
201 PF15290 Syntaphilin: Golgi-lo 34.1 3.8E+02 0.0083 31.5 11.1 100 263-362 64-170 (305)
202 PF04871 Uso1_p115_C: Uso1 / p 34.1 5.6E+02 0.012 26.7 13.9 51 470-522 59-109 (136)
203 PF09744 Jnk-SapK_ap_N: JNK_SA 33.7 6.3E+02 0.014 27.2 12.0 61 600-668 51-114 (158)
204 PF04094 DUF390: Protein of un 33.6 1.3E+03 0.028 30.6 28.5 52 137-188 414-472 (828)
205 cd07651 F-BAR_PombeCdc15_like 32.8 7E+02 0.015 27.4 18.7 128 461-614 88-216 (236)
206 KOG1853 LIS1-interacting prote 32.6 8.7E+02 0.019 28.5 15.8 80 237-323 50-129 (333)
207 PRK10884 SH3 domain-containing 32.6 5.5E+02 0.012 28.5 11.7 17 491-507 147-163 (206)
208 KOG1666 V-SNARE [Intracellular 32.5 8E+02 0.017 28.0 13.2 142 197-346 21-186 (220)
209 smart00787 Spc7 Spc7 kinetocho 31.9 9E+02 0.02 28.4 19.2 13 390-402 125-137 (312)
210 PF15254 CCDC14: Coiled-coil d 31.6 1E+03 0.023 31.6 15.1 86 571-663 452-537 (861)
211 KOG1924 RhoA GTPase effector D 31.5 59 0.0013 42.0 4.7 32 455-486 873-904 (1102)
212 KOG0943 Predicted ubiquitin-pr 29.9 53 0.0012 44.1 4.0 15 845-859 1489-1503(3015)
213 TIGR01843 type_I_hlyD type I s 29.5 9.2E+02 0.02 27.7 23.0 47 534-580 125-171 (423)
214 PF03194 LUC7: LUC7 N_terminus 29.3 2.7E+02 0.0057 31.7 8.9 16 768-783 186-201 (254)
215 PF07926 TPR_MLP1_2: TPR/MLP1/ 28.9 6.3E+02 0.014 25.7 16.5 29 430-458 20-48 (132)
216 COG3883 Uncharacterized protei 28.5 1E+03 0.022 27.9 16.9 149 405-563 65-235 (265)
217 smart00806 AIP3 Actin interact 27.9 9.3E+02 0.02 29.8 13.4 66 255-327 252-321 (426)
218 PF12777 MT: Microtubule-bindi 27.7 6.5E+02 0.014 29.4 11.9 88 433-520 14-101 (344)
219 COG3074 Uncharacterized protei 27.6 5.7E+02 0.012 24.8 9.9 65 530-616 6-70 (79)
220 PF12718 Tropomyosin_1: Tropom 27.5 7.3E+02 0.016 26.0 18.1 135 315-463 6-140 (143)
221 KOG0980 Actin-binding protein 27.5 1.7E+03 0.037 30.2 33.5 54 529-582 463-516 (980)
222 PF12329 TMF_DNA_bd: TATA elem 27.5 5.3E+02 0.012 24.3 9.2 66 499-574 3-68 (74)
223 PRK08476 F0F1 ATP synthase sub 27.4 7E+02 0.015 25.7 14.6 25 572-596 36-60 (141)
224 COG4487 Uncharacterized protei 27.2 1.3E+03 0.028 28.8 18.9 75 667-744 113-187 (438)
225 KOG3565 Cdc42-interacting prot 25.8 1.6E+03 0.034 29.2 15.8 154 375-547 36-190 (640)
226 PRK10929 putative mechanosensi 25.8 1.9E+03 0.042 30.3 35.1 343 148-510 55-431 (1109)
227 PF10267 Tmemb_cc2: Predicted 25.2 1.3E+03 0.029 28.2 14.5 31 531-561 211-241 (395)
228 PF05529 Bap31: B-cell recepto 25.2 4.2E+02 0.0091 28.2 9.1 36 534-569 156-191 (192)
229 cd07605 I-BAR_IMD Inverse (I)- 25.1 1E+03 0.022 26.8 13.3 111 649-772 74-194 (223)
230 KOG2072 Translation initiation 25.0 1.8E+03 0.04 29.8 39.7 53 460-512 541-593 (988)
231 PF06705 SF-assemblin: SF-asse 24.9 9.8E+02 0.021 26.6 31.5 157 530-706 14-170 (247)
232 PF00430 ATP-synt_B: ATP synth 24.8 6.6E+02 0.014 24.5 10.1 88 571-658 27-118 (132)
233 PRK06800 fliH flagellar assemb 24.3 3.9E+02 0.0084 29.9 8.6 51 722-772 35-85 (228)
234 KOG0946 ER-Golgi vesicle-tethe 24.2 1.9E+03 0.041 29.6 25.2 22 524-545 910-931 (970)
235 PF07139 DUF1387: Protein of u 24.1 9.8E+02 0.021 28.4 12.3 101 671-782 178-289 (302)
236 KOG0963 Transcription factor/C 23.8 1.7E+03 0.037 29.0 39.2 207 350-573 120-330 (629)
237 PF13863 DUF4200: Domain of un 23.7 7.1E+02 0.015 24.5 14.5 18 539-556 88-105 (126)
238 TIGR03545 conserved hypothetic 23.7 5.4E+02 0.012 32.5 10.9 93 463-566 165-257 (555)
239 KOG0570 Transcriptional coacti 23.4 47 0.001 36.9 1.7 26 171-196 146-171 (223)
240 PRK09841 cryptic autophosphory 23.2 1.5E+03 0.033 29.1 14.9 30 336-365 355-384 (726)
241 cd07604 BAR_ASAPs The Bin/Amph 22.8 1.1E+03 0.024 26.4 13.2 52 531-582 76-130 (215)
242 PF10498 IFT57: Intra-flagella 22.8 6.9E+02 0.015 30.0 11.1 99 199-328 222-320 (359)
243 COG1842 PspA Phage shock prote 22.7 5.9E+02 0.013 28.7 10.0 108 177-297 29-136 (225)
244 COG5570 Uncharacterized small 22.5 2.7E+02 0.0058 25.6 5.8 37 511-547 19-55 (57)
245 PF05149 Flagellar_rod: Parafl 22.1 1.3E+03 0.029 27.1 16.3 105 676-791 38-143 (289)
246 PF11932 DUF3450: Protein of u 22.0 1.1E+03 0.024 26.2 14.9 45 528-572 31-75 (251)
247 PF12777 MT: Microtubule-bindi 22.0 1E+03 0.022 27.8 12.2 84 309-393 8-91 (344)
248 KOG0963 Transcription factor/C 21.9 1.8E+03 0.04 28.7 29.0 57 361-422 181-237 (629)
249 PF11068 YlqD: YlqD protein; 21.5 7.5E+02 0.016 25.9 9.7 70 688-773 18-87 (131)
250 PTZ00266 NIMA-related protein 21.5 1.2E+03 0.027 31.7 13.9 13 978-990 772-784 (1021)
251 PF14197 Cep57_CLD_2: Centroso 21.4 2.6E+02 0.0056 26.3 5.8 56 728-785 1-56 (69)
252 PF13094 CENP-Q: CENP-Q, a CEN 21.3 5.3E+02 0.011 26.8 8.8 50 469-518 41-90 (160)
253 PRK08404 V-type ATP synthase s 21.1 7E+02 0.015 24.8 9.1 33 177-209 67-99 (103)
254 KOG2150 CCR4-NOT transcription 20.8 1.9E+03 0.041 28.3 15.7 125 493-633 4-145 (575)
255 PRK10780 periplasmic chaperone 20.3 9.4E+02 0.02 25.2 10.4 10 397-406 103-112 (165)
256 CHL00118 atpG ATP synthase CF0 20.1 9.9E+02 0.022 24.8 14.6 20 572-591 51-70 (156)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=99.50 E-value=1.5e-07 Score=115.15 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=10.4
Q ss_pred hhcHHHHHHHHHHH
Q 000927 90 RKDREALMEKVSKL 103 (1222)
Q Consensus 90 rkd~~aLia~iskL 103 (1222)
+.+|..++..|..|
T Consensus 148 p~~R~~ii~~l~~l 161 (880)
T PRK02224 148 PSDRQDMIDDLLQL 161 (880)
T ss_pred HHHHHHHHHHHhCC
Confidence 36788888887765
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.45 E-value=4e-06 Score=109.88 Aligned_cols=555 Identities=21% Similarity=0.293 Sum_probs=321.9
Q ss_pred ccchhhHHHHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhh
Q 000927 196 EKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQRED 275 (1222)
Q Consensus 196 esKLaEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~ 275 (1222)
+..|.+...=+...+++...++.++..++... .++...+.++|.--..++++.-.........+.++..+++.
T Consensus 907 e~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~-------~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~ 979 (1930)
T KOG0161|consen 907 EKELKELKERLEEEEEKNAELERKKRKLEQEV-------QELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDEN 979 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443221 12223333333333344445555555555566666666666
Q ss_pred HHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHH-------HHHHHHHHHH
Q 000927 276 LREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDE-------INSRLAELVV 348 (1222)
Q Consensus 276 L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~kedd-------i~~rl~~L~~ 348 (1222)
+..--|.=...++++-+.+.-|...++.++.-.+.+.+.+..|++++..++..+....+.+-. +...-..+..
T Consensus 980 ~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~ 1059 (1930)
T KOG0161|consen 980 ISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEE 1059 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 655444444468888888888999999999999999899999888888888877777655522 2222222222
Q ss_pred HHHHHHHHhhhHHhhHHhHHHHHHHHhhHHH--HHHHHHHHH-----------------HHHHHHHhhhHHHHHHHHHhh
Q 000927 349 KEREADCLRSTVEMKEKRLLTIEEKLNARER--VEIQKLLDD-----------------QRAILDAKQQEFELELEEKRK 409 (1222)
Q Consensus 349 kEke~~~~~~~Le~KEkeLl~leEKL~aRE~--~eIQkLlde-----------------h~a~L~~Kk~eFElElE~kRK 409 (1222)
-......+...|.++|-+|..++.++..-.. ...||.+.+ .++.++..++++..+++..+.
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666777788888877777754331 222222222 344566667777777777777
Q ss_pred hHHHHHHHHHHHH---hhhhhhhhhhHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHhhHHHHHHhHHHHHHHHHHHH
Q 000927 410 SIEEEMRSKISAL---DQQEFEISHREEKLERREQALDKKSDRVKE----KENDLAARLKSVKEREKFVKAEEKKLELEK 482 (1222)
Q Consensus 410 s~eeel~~K~~~~---e~rEvel~h~Eekl~krEqaLe~k~~~lke----KEkdl~~K~k~LKEkEksL~aeEK~lE~ek 482 (1222)
-+++-......-. .++|.++..+-..+.+.....+.++..+.. .=.+|.+-+..++.....+..+...|+.+-
T Consensus 1140 ~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~ 1219 (1930)
T KOG0161|consen 1140 ELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREI 1219 (1930)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766644433333 356666666655555555544444444432 334556666666666666666677777777
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000927 483 QKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDR 562 (1222)
Q Consensus 483 ~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ek 562 (1222)
..|..+-..+...++++++..-.++ .++.+-+.++.-...-++++..-.++|..|+..+=.|.++....+..|-..+
T Consensus 1220 ~~l~~ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~ 1296 (1930)
T KOG0161|consen 1220 ADLAAELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDK 1296 (1930)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHH
Confidence 7777777777777788888776666 4455555666666677777888888888999888888888888888888888
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 000927 563 EKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSE 642 (1222)
Q Consensus 563 ekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~e 642 (1222)
..|+.+-+.+ +.+|..+ +.++-++..-+ -+|..+.+.++.+|.-+.+....-.-. ..+-.-+=+.|-.
T Consensus 1297 ~~~~~qle~~---k~qle~e----~r~k~~l~~~l----~~l~~e~~~l~e~leee~e~~~~l~r~-lsk~~~e~~~~~~ 1364 (1930)
T KOG0161|consen 1297 QALESQLEEL---KRQLEEE----TREKSALENAL----RQLEHELDLLREQLEEEQEAKNELERK-LSKANAELAQWKK 1364 (1930)
T ss_pred HHHHHHHHHH---HHHHHHH----HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 8888887766 3333333 33444443332 345555667777776666655421100 1111223334444
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----------------------------------HHHHHHHHHHH--
Q 000927 643 KAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEK----------------------------------ELQERTRTFEE-- 686 (1222)
Q Consensus 643 k~q~Erad~l~d~E~qkreLE~~~~~r~EE~E~----------------------------------~L~EREk~FEe-- 686 (1222)
|++....+-+-+++.-|+.|...++.-++.+|- .|..+-+.|+.
T Consensus 1365 k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l 1444 (1930)
T KOG0161|consen 1365 KFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLL 1444 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555544444444433332 12333333332
Q ss_pred -HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHH
Q 000927 687 -KRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERF 765 (1222)
Q Consensus 687 -ek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~eRe~f 765 (1222)
+-.+-...+....+.+.++..+...+..++...-.+.....+.+.++-..|...|.+|..+-.-+-+....+...+..+
T Consensus 1445 ~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~l 1524 (1930)
T KOG0161|consen 1445 AEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRL 1524 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223344555566666666666666666666666665555566666555566666666555555555555555555555
Q ss_pred HHHHHhh
Q 000927 766 LEFVEKH 772 (1222)
Q Consensus 766 l~~vEkl 772 (1222)
...++.+
T Consensus 1525 e~e~~el 1531 (1930)
T KOG0161|consen 1525 EQEKEEL 1531 (1930)
T ss_pred HHHHHHH
Confidence 5544433
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=99.38 E-value=6.6e-06 Score=101.04 Aligned_cols=93 Identities=12% Similarity=0.191 Sum_probs=61.5
Q ss_pred HHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhcccccchhhHHHHhhhhccchhHHHhhhhhHHHHHHHhhccch
Q 000927 156 AEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSS 235 (1222)
Q Consensus 156 aeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKLaEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s 235 (1222)
...|.+=+.+.+|+ .. +-.+...+.+++..+..++-...+.+.+....+.. ....++...|..+...++++....+
T Consensus 148 p~~R~~ii~~l~~l-~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~l~~~~~~l~el~~~i~ 223 (880)
T PRK02224 148 PSDRQDMIDDLLQL-GK-LEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIE 223 (880)
T ss_pred HHHHHHHHHHHhCC-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778899998 33 35567777777777777887888888777776666 2234556667777777776666666
Q ss_pred HHHhHHHHhhhhHHHHH
Q 000927 236 ELEMKLQELESRESVIK 252 (1222)
Q Consensus 236 ~~eRkL~evEaRE~~Lr 252 (1222)
.+...+..+...-..|.
T Consensus 224 ~~~~~~~~l~~~l~~l~ 240 (880)
T PRK02224 224 RYEEQREQARETRDEAD 240 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66555555554444443
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.34 E-value=2e-05 Score=101.66 Aligned_cols=75 Identities=12% Similarity=0.014 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhhhhhhhcccccchhhHHHHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHH
Q 000927 175 ADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRES 249 (1222)
Q Consensus 175 adLEKAL~emr~E~AeiK~~sesKLaEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~ 249 (1222)
..|.+.|+....+....+-..+.++..+..-+..+..+....+..+..+...+....+....+.++|..++.-++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~ 471 (1311)
T TIGR00606 397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD 471 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChH
Confidence 346666666677777777777777777777777777777766666666666666666666666666665544444
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=5e-05 Score=98.09 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=57.5
Q ss_pred hHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHH
Q 000927 214 LEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSEL 293 (1222)
Q Consensus 214 lEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~ 293 (1222)
..+...+.+....+..++.....+++.+..++..-..++++.-....+..++...|. +-.++.+.+..|.+.++.|-..
T Consensus 573 ~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~-~~~~~~~~~~~L~~~~~~l~~~ 651 (1311)
T TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF-DVCGSQDEESDLERLKEEIEKS 651 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHH
Confidence 344666666666677777777777777777777777777777777777777777777 2225566666777777666666
Q ss_pred HHhhhhHH
Q 000927 294 RRTLNQRE 301 (1222)
Q Consensus 294 qr~LNqRE 301 (1222)
+..++.-.
T Consensus 652 ~~~~~~~~ 659 (1311)
T TIGR00606 652 SKQRAMLA 659 (1311)
T ss_pred HHHHHHHH
Confidence 64444433
No 6
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.11 E-value=0.00028 Score=93.34 Aligned_cols=638 Identities=21% Similarity=0.244 Sum_probs=324.5
Q ss_pred HHHHHHHHHHHhHhhhhhcccceeeeccchh----hhHHHHHHhHHHHHHHHHHhhhhhhhHHHHHHHhHHHHHHhhhhh
Q 000927 95 ALMEKVSKLEKELYDYQYNMGLLLIEKKEWT----SKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSME 170 (1222)
Q Consensus 95 aLia~iskLE~ElydYQynMGLLLiEkKEwt----Sk~eel~qa~~e~~~~lKREqaAhl~ALsEaeKREEnLkKALgvE 170 (1222)
-+--.+.+||.+|-+.|+.|-.+-..+-++. .+..+|.+..... +-+..+-+-+.--+.+...|=.-|.--|.-|
T Consensus 1038 e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~-e~e~~~~~~l~k~i~eL~~~i~el~e~le~e 1116 (1930)
T KOG0161|consen 1038 ELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKL-EDEQAEVAQLQKQIKELEARIKELEEELEAE 1116 (1930)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667899999999999887554444332 3333343322221 2234444555566777777888888899999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccccchhhHHHHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHH
Q 000927 171 KQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESV 250 (1222)
Q Consensus 171 KqCVadLEKAL~emr~E~AeiK~~sesKLaEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~ 250 (1222)
+.|.+-+||++.+|..++..++---+ +..-..-+.+.+...+.+|+.+-++.++..-..-++--..
T Consensus 1117 r~~r~K~ek~r~dL~~ele~l~~~Le--------------e~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~ 1182 (1930)
T KOG0161|consen 1117 RASRAKAERQRRDLSEELEELKEELE--------------EQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEE 1182 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999877653221 1122222333333334444444444444333333333333
Q ss_pred HHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhh
Q 000927 251 IKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSS 330 (1222)
Q Consensus 251 LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~~ 330 (1222)
|| -.+.........++.---..=..-+|.-+..+.-+.+....+.++...-...++..+..+..|-+++-+++....
T Consensus 1183 lr---~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~ 1259 (1930)
T KOG0161|consen 1183 LR---KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQER 1259 (1930)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 222222222222221111111122333333344455555666677666666777777777777777777665544
Q ss_pred hhHh---hHHHHHHHHHHHHHHHHHHHHHhh----hHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000927 331 KLKE---REDEINSRLAELVVKEREADCLRS----TVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELE 403 (1222)
Q Consensus 331 ~Lk~---keddi~~rl~~L~~kEke~~~~~~----~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElE 403 (1222)
.+.. +...+..-+..|+....+....-+ .....+..|-.+...|..- --.+..|....+.++.|
T Consensus 1260 ~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e---------~r~k~~l~~~l~~l~~e 1330 (1930)
T KOG0161|consen 1260 LRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEE---------TREKSALENALRQLEHE 1330 (1930)
T ss_pred HHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 4322 222222223333322222222111 1112222222222111111 11345678888999999
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH
Q 000927 404 LEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQ 483 (1222)
Q Consensus 404 lE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~ 483 (1222)
+...|+.++++++.|-.-.-+-=......=.-..+-+-.+....+.+.+--+-+..++..+.+....+.+..-.|+.-+.
T Consensus 1331 ~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~ 1410 (1930)
T KOG0161|consen 1331 LDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKN 1410 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988763322211111122222233334444447778888888899999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000927 484 KLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDRE 563 (1222)
Q Consensus 484 ~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~eke 563 (1222)
.|+.+-+.+..--..+-..-+.++.+..+.. ++..+.+.-+..|+.+|.+.+...|.....+++=...|..-+.
T Consensus 1411 ~l~~el~d~~~d~~~~~~~~~~le~k~k~f~------k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e 1484 (1930)
T KOG0161|consen 1411 RLQQELEDLQLDLERSRAAVAALEKKQKRFE------KLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLE 1484 (1930)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9988776655443333344556666666555 3445566666666777776666666555444332111111111
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH---hHHHHhHHHHHHHHHHHHHHHHHhhhcHHH---HHHHHHHHH
Q 000927 564 KFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQH---SAEERLKKEECAMRDYVQREIEAIRLDKEA---FEATMRHEQ 637 (1222)
Q Consensus 564 kFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~---~E~erLK~Ek~~~r~~~krelE~L~~ekEs---F~~~M~hE~ 637 (1222)
.=+.|......+.-+..++.....-+.+-.+ ....+|-.++..|+..+..--.+|..+.-. +.-.|..-|
T Consensus 1485 ----~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r 1560 (1930)
T KOG0161|consen 1485 ----QLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLR 1560 (1930)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 1122222223333333333333322222221 111122222333333222221111111110 111122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-------hhhHHHHHHHHHHHHH
Q 000927 638 LVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKR--ERVL-------NDIAHLKEVAEGEIQE 708 (1222)
Q Consensus 638 s~~~ek~q~Erad~l~d~E~qkreLE~~~~~r~EE~E~~L~EREk~FEeek--~~EL-------~~In~lke~a~kE~Ee 708 (1222)
+. +.+..+.--.+||..|+++--.|..-+.+++..-+.|--.+--+| +-.+ ++-|....-+.+.|-.
T Consensus 1561 ~e----~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk 1636 (1930)
T KOG0161|consen 1561 SE----IERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKK 1636 (1930)
T ss_pred HH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHh
Confidence 22 222333344567777888777777777788877777777776644 2223 3334444444444444
Q ss_pred HHHHHHHHHHHHHHHhhhHhHHH-------HHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhc
Q 000927 709 IKSERDQLEKEKHEVKVNREKLQ-------EQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHT 773 (1222)
Q Consensus 709 v~~E~~rLekEr~Ei~~~ke~le-------~q~~em~kdIeeL~~ls~KLk~qRE~~~~eRe~fl~~vEklK 773 (1222)
.+.-+.-|+.+..++..-++.+. +....++..+++|..--.-+..-|..+-.++..+.+.|-.+.
T Consensus 1637 ~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1637 LQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELN 1708 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 44444445555555544444444 333334444444444444444455555555555555554433
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.09 E-value=0.00017 Score=89.38 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=24.5
Q ss_pred hhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHH-HHHHHHHHHHHHHhhc
Q 000927 725 VNREKLQEQQLGMRKDIDELDILCRRLYGDREQ-FKREKERFLEFVEKHT 773 (1222)
Q Consensus 725 ~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~-~~~eRe~fl~~vEklK 773 (1222)
.....+..|..++...++.|...-.++.+.=.. |..-++.|....++.+
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~ 1042 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVN 1042 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666655555443222 2222344444444433
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=99.06 E-value=0.00022 Score=87.71 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=27.6
Q ss_pred hhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHHh
Q 000927 257 SLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREV 302 (1222)
Q Consensus 257 Sf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe 302 (1222)
.+..+....+..+..-...+.+|+..|.+.+..+...+.++++.+.
T Consensus 242 ~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~ 287 (880)
T PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE 287 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555556677777777777777666666655443
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.05 E-value=0.00025 Score=88.01 Aligned_cols=8 Identities=38% Similarity=0.675 Sum_probs=3.3
Q ss_pred HHHHHhcc
Q 000927 75 RRFREAGL 82 (1222)
Q Consensus 75 ~r~~~~g~ 82 (1222)
..|...|+
T Consensus 126 ~~l~~~~i 133 (1179)
T TIGR02168 126 DLFLDTGL 133 (1179)
T ss_pred HHHhccCC
Confidence 33444443
No 10
>PRK01156 chromosome segregation protein; Provisional
Probab=99.03 E-value=0.0003 Score=87.32 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=23.7
Q ss_pred HHhHHHHHHhhhhhH--HHHHHHHHHHHHHhhhhhhhh
Q 000927 157 EKREDNLRRALSMEK--QCVADLEKALRDMGEERAQTK 192 (1222)
Q Consensus 157 eKREEnLkKALgvEK--qCVadLEKAL~emr~E~AeiK 192 (1222)
..|.+-|.+.+|++. .|...|..++..++.++..+.
T Consensus 149 ~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~ei~~le 186 (895)
T PRK01156 149 AQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNID 186 (895)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557888888885 566666666666666655543
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.02 E-value=0.00033 Score=87.41 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHH-----HHHHHHHHHHHH
Q 000927 702 AEGEIQEIKSERDQLE-------KEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQ-----FKREKERFLEFV 769 (1222)
Q Consensus 702 a~kE~Eev~~E~~rLe-------kEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~-----~~~eRe~fl~~v 769 (1222)
+..++..+..++..+. .+-.++......+..++..+.+.++.|...-.+|.+.|.. |..=..+|-..+
T Consensus 956 l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~ 1035 (1164)
T TIGR02169 956 VQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNEIF 1035 (1164)
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555544443 4455566666777777777777777777777777766532 333366666666
Q ss_pred Hhhc
Q 000927 770 EKHT 773 (1222)
Q Consensus 770 EklK 773 (1222)
..|-
T Consensus 1036 ~~l~ 1039 (1164)
T TIGR02169 1036 AELS 1039 (1164)
T ss_pred HHHh
Confidence 5554
No 12
>PRK03918 chromosome segregation protein; Provisional
Probab=99.00 E-value=0.00034 Score=86.08 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHH
Q 000927 711 SERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELD 745 (1222)
Q Consensus 711 ~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~ 745 (1222)
.+...+.....++......++.+...+.++|+.+.
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~ 700 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444443
No 13
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.91 E-value=0.0011 Score=85.63 Aligned_cols=206 Identities=16% Similarity=0.271 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Q 000927 526 EKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLK 605 (1222)
Q Consensus 526 ER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK 605 (1222)
++.+|......|.++|+.+..+...+.+..+.+..+.....+.-+.+...-+..+-+.+.+......+..-..+...++.
T Consensus 594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46688888999999999999999999999999999988888888888888888888888777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 606 KEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFE 685 (1222)
Q Consensus 606 ~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLE~~~~~r~EE~E~~L~EREk~FE 685 (1222)
..+..-+..+...+..|..+-..|- .|+..|....+........++--+..+++..+....+.+...+..+...|.
T Consensus 674 ~~~~~~~~~~~~~l~~l~~~l~~~~----~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~ 749 (1201)
T PF12128_consen 674 EAKEERKEQIEEQLNELEEELKQLK----QELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK 749 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888888877777665553 455566666666666666666666667777777777776666665555555
Q ss_pred HH-------HHHHHhh--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHh
Q 000927 686 EK-------RERVLND--IAH-LKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQL 735 (1222)
Q Consensus 686 ee-------k~~EL~~--In~-lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~ 735 (1222)
++ ...+|.. |+- .-..++.+++.+..++.+++.-|..|..=+.=++..|.
T Consensus 750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~ 809 (1201)
T PF12128_consen 750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWD 809 (1201)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 43 3344432 111 34556778888888888888888888775555555554
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.90 E-value=0.00087 Score=83.77 Aligned_cols=12 Identities=8% Similarity=0.482 Sum_probs=6.5
Q ss_pred hhhcHHHHHHHH
Q 000927 89 ERKDREALMEKV 100 (1222)
Q Consensus 89 ~rkd~~aLia~i 100 (1222)
.+.++..++..|
T Consensus 151 ~~~~r~~~~~~~ 162 (1164)
T TIGR02169 151 SPVERRKIIDEI 162 (1164)
T ss_pred CHHHHHHHHHHH
Confidence 445555565555
No 15
>PRK01156 chromosome segregation protein; Provisional
Probab=98.89 E-value=0.0009 Score=83.21 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=19.2
Q ss_pred HhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhh
Q 000927 727 REKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKH 772 (1222)
Q Consensus 727 ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~eRe~fl~~vEkl 772 (1222)
...+..+...++.+|..|...-..|+++-+.+..+...+-.+++.+
T Consensus 683 ~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l 728 (895)
T PRK01156 683 LKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESM 728 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333333333333333333
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.86 E-value=0.0015 Score=83.91 Aligned_cols=95 Identities=22% Similarity=0.297 Sum_probs=59.0
Q ss_pred HHHHHHhHhhhhhcccceeeeccchhhhHHHHHHhHHHHHH---HHHHhhhhhhhHHHHHHHhHHHHHHhhhhhHHHHHH
Q 000927 100 VSKLEKELYDYQYNMGLLLIEKKEWTSKIEELRQSFEETQE---ILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVAD 176 (1222)
Q Consensus 100 iskLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~e~~~---~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVad 176 (1222)
.-.|..++..+++- +++.+-..+..+++++...+...+. .+......+.-.+...+.+-+.++..+..-.++...
T Consensus 215 y~~l~~e~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~ 292 (1163)
T COG1196 215 YQELKAELRELELA--LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292 (1163)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666654 3445556667777777777766653 344455555555666666667777766666777777
Q ss_pred HHHHHHHHhhhhhhhhcccc
Q 000927 177 LEKALRDMGEERAQTKLFSE 196 (1222)
Q Consensus 177 LEKAL~emr~E~AeiK~~se 196 (1222)
+...+.++-.+.+.++-..+
T Consensus 293 ~~~~~~~le~~~~~~~~~~~ 312 (1163)
T COG1196 293 LKEEIEELEGEISLLRERLE 312 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77677777766666654433
No 17
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.52 E-value=0.016 Score=76.83 Aligned_cols=451 Identities=23% Similarity=0.290 Sum_probs=256.5
Q ss_pred hhcHHHHHHHHHHHHHhHh-------hh---hhcccceeeec-------------cchh---hhHHHHHHhHHHHHHHHH
Q 000927 90 RKDREALMEKVSKLEKELY-------DY---QYNMGLLLIEK-------------KEWT---SKIEELRQSFEETQEILK 143 (1222)
Q Consensus 90 rkd~~aLia~iskLE~Ely-------dY---QynMGLLLiEk-------------KEwt---Sk~eel~qa~~e~~~~lK 143 (1222)
+.+.+-|..+++.|++.|- .| +|||..-+.+. ..++ |+..++++.+-..+.+|.
T Consensus 864 ~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~ 943 (1822)
T KOG4674|consen 864 STNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLE 943 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777641 11 34666555443 2222 444556666777778889
Q ss_pred HhhhhhhhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhcccccchhhHHHHhhhhccchhHHHhhhhhH
Q 000927 144 REQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAA 223 (1222)
Q Consensus 144 REqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKLaEA~aLv~~~eeKslEvE~Kl~aA 223 (1222)
+....|=--..+++.+-+++.+-+.-=..=+..|++-.-.++.+++-.....+.+++++..-+.++..-...+....
T Consensus 944 ~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~--- 1020 (1822)
T KOG4674|consen 944 SVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAA--- 1020 (1822)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHH---
Confidence 98888888888888888877765544444566677777888888888888888888888888777765444333322
Q ss_pred HHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHh---HhhHHHHHHhhchhhhhhHHHHHhhhhH
Q 000927 224 EAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQ---REDLREWEKKLQIGDERLSELRRTLNQR 300 (1222)
Q Consensus 224 eaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~q---Re~L~eweKkLqe~eerL~~~qr~LNqR 300 (1222)
-.+++..+.+-.. |..++.+...-..-||.++..- .+.|.....-+......+.++....-++
T Consensus 1021 ----s~~~~~~~~~k~d----------l~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~ 1086 (1822)
T KOG4674|consen 1021 ----SQANEQIEDLQND----------LKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESR 1086 (1822)
T ss_pred ----HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 2333333333333 3333333333333333333221 2233333333444444444444444444
Q ss_pred HhhhhhhHHHHH----HhhhhHHHHHhhhhhhhhhhHhhHHHHHH---HHH--HHHHHHHHHHHHhhhHHh--hHHhHHH
Q 000927 301 EVKANENERILK----QKERDLEELEKKIDLSSSKLKEREDEINS---RLA--ELVVKEREADCLRSTVEM--KEKRLLT 369 (1222)
Q Consensus 301 Ee~~~E~~~~lk----~kekeLEe~~kkie~~~~~Lk~keddi~~---rl~--~L~~kEke~~~~~~~Le~--KEkeLl~ 369 (1222)
..-.-+..+-.. ..++++..+.+.|..-....+...+.|.. ..+ .++.-+.-...+...+-- +|+++..
T Consensus 1087 ~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~ 1166 (1822)
T KOG4674|consen 1087 HALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAE 1166 (1822)
T ss_pred HhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHh
Confidence 333222222222 23445555555555444433333333222 222 222222222222222221 6777777
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhH---------HHHHHHHHHHHh-hhhh------hhhhhH
Q 000927 370 IEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSI---------EEEMRSKISALD-QQEF------EISHRE 433 (1222)
Q Consensus 370 leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~---------eeel~~K~~~~e-~rEv------el~h~E 433 (1222)
-+-.+.-+|...... +-+.+.....++...|...|.++ +.+|-.++..|. .+|- +..+-.
T Consensus 1167 tk~~~lk~e~~~L~q----q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~ 1242 (1822)
T KOG4674|consen 1167 TKLDTLKRENARLKQ----QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANL 1242 (1822)
T ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 776777777644332 22566666677777777777776 455666666554 2232 233333
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH-------HH-----HhhHHHHHHHHHHHHH
Q 000927 434 EKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQ-------KL-----IADKESLQILKVEIDQ 501 (1222)
Q Consensus 434 ekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~-------~L-----~~dkEel~~lK~elEK 501 (1222)
.++ +.|..+..+++..=.-|..-++.|+..=....++=+.|+.+.. .| ..|+.++.+|+.+|..
T Consensus 1243 ~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~ 1318 (1822)
T KOG4674|consen 1243 EKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISR 1318 (1822)
T ss_pred HHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 333 4444455554444444444444444444444444444443332 22 2357888888888888
Q ss_pred HHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHh
Q 000927 502 IESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEK 575 (1222)
Q Consensus 502 ~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEK 575 (1222)
+...++.....|.+-. .++.++|-++|+..|.+-..+..+.++...|+.-+-+.+.-|.-+-++
T Consensus 1319 Lk~el~~ke~~~~el~----------~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1319 LKEELEEKENLIAELK----------KELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888886666665433 356677788999999999999999999999999999999999877666
No 18
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.44 E-value=0.016 Score=72.96 Aligned_cols=99 Identities=31% Similarity=0.347 Sum_probs=47.3
Q ss_pred HHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHH-------HhhchhhhhhHHHHHh
Q 000927 224 EAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWE-------KKLQIGDERLSELRRT 296 (1222)
Q Consensus 224 eaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~ewe-------KkLqe~eerL~~~qr~ 296 (1222)
...++++.+....+..+++.++.....+......+.. +.+....+...++.|..|. .++......+.++...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~ 351 (908)
T COG0419 273 EEELRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEE 351 (908)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666655554444433 4444444444444444444 4444444444444444
Q ss_pred hhhHHhhhhhhHHHHHHhhhhHHHHHhhhh
Q 000927 297 LNQREVKANENERILKQKERDLEELEKKID 326 (1222)
Q Consensus 297 LNqREe~~~E~~~~lk~kekeLEe~~kkie 326 (1222)
.|+...-+.++...+... ++.+++.+.
T Consensus 352 ~~~~~~~~~~~~~~l~~~---~~~l~~~~~ 378 (908)
T COG0419 352 KNELAKLLEERLKELEER---LEELEKELE 378 (908)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 444444433333333222 444444444
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.39 E-value=0.026 Score=73.12 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=50.1
Q ss_pred hhHHHHHHHhccchh-------------HHhhhhcHHHHHHHH----------HHHHHhHhhhhhcccceeeeccchhhh
Q 000927 71 EDDWRRFREAGLLDE-------------ATMERKDREALMEKV----------SKLEKELYDYQYNMGLLLIEKKEWTSK 127 (1222)
Q Consensus 71 ~~~w~r~~~~g~lde-------------~s~~rkd~~aLia~i----------skLE~ElydYQynMGLLLiEkKEwtSk 127 (1222)
.++=.-|...|+.-. .+|++.++..|++-+ .+.+..|-.=+=|+--+=.-..+...+
T Consensus 122 ~dI~~l~~~~gi~~~~~~iV~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~ 201 (1163)
T COG1196 122 KDIQDLLADSGIGKESYSIVSQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQ 201 (1163)
T ss_pred HHHHHHHHhcCCCCCCCceeecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888886322 345556666666543 355667777778888777778888888
Q ss_pred HHHHHHhHHHHHHHH
Q 000927 128 IEELRQSFEETQEIL 142 (1222)
Q Consensus 128 ~eel~qa~~e~~~~l 142 (1222)
++.|+.....++..+
T Consensus 202 l~~L~~q~~~a~~y~ 216 (1163)
T COG1196 202 LEKLERQAEKAERYQ 216 (1163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887777643
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.29 E-value=0.024 Score=68.36 Aligned_cols=43 Identities=28% Similarity=0.446 Sum_probs=39.3
Q ss_pred HHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhc
Q 000927 731 QEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHT 773 (1222)
Q Consensus 731 e~q~~em~kdIeeL~~ls~KLk~qRE~~~~eRe~fl~~vEklK 773 (1222)
.=+.+|-++.|.+|+.-=+-+++-.|+|..|+..++..|++|.
T Consensus 409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le 451 (546)
T PF07888_consen 409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLE 451 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999999999999999987
No 21
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.19 E-value=0.051 Score=68.10 Aligned_cols=471 Identities=21% Similarity=0.285 Sum_probs=262.5
Q ss_pred HHHHhhhhhhhhcccccchhhHHHHhhhhcc-chhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhH
Q 000927 181 LRDMGEERAQTKLFSEKTLTDANTLLGGIEG-KSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLV 259 (1222)
Q Consensus 181 L~emr~E~AeiK~~sesKLaEA~aLv~~~ee-KslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~ 259 (1222)
|+.++.|+--.+--.|.+.+++++.+.+|.+ =|-+++.----++---|++++-.+++...-- +--.+-
T Consensus 5 l~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~-----------e~q~~~ 73 (775)
T PF10174_consen 5 LERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQE-----------ENQKAQ 73 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHh-----------hHHHHH
Confidence 5677888888888889999999999999876 2233322111122222333333333221111 111334
Q ss_pred hHHHhHHHHHHHhHhhHHHHHHhh----------chhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhh
Q 000927 260 TEREAHEAAFYKQREDLREWEKKL----------QIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSS 329 (1222)
Q Consensus 260 ~Erea~E~~~~~qRe~L~eweKkL----------qe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~ 329 (1222)
.+..++...+..| .+++-..-.+ +...-......|+--.||..+.|.+.+ ...|++++-.|+.-.
T Consensus 74 ~ei~~LqeELr~q-~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~l----r~~lE~~q~~~e~~q 148 (775)
T PF10174_consen 74 EEIQALQEELRAQ-RELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERL----RKTLEELQLRIETQQ 148 (775)
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4555555555222 2222111111 111111123334444555555544433 345555555555555
Q ss_pred hhhHhhHHHHHHHH--------------------HHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhh-----HH---HHH
Q 000927 330 SKLKEREDEINSRL--------------------AELVVKEREADCLRSTVEMKEKRLLTIEEKLNA-----RE---RVE 381 (1222)
Q Consensus 330 ~~Lk~keddi~~rl--------------------~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~a-----RE---~~e 381 (1222)
.+|-...+.|..=+ ..+.-.|-.+..++..|+.+|++...+-+.|-- ++ ...
T Consensus 149 ~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~a 228 (775)
T PF10174_consen 149 QTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEA 228 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHH
Confidence 55544444433333 334444556677788888888888666333322 12 235
Q ss_pred HHHHHHHHHH---HHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000927 382 IQKLLDDQRA---ILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLA 458 (1222)
Q Consensus 382 IQkLldeh~a---~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~ 458 (1222)
+|++|+.-.+ .|+.-.+.+|.|+...+..++---. -+.-..++++.........|.. ++.-.=.|..+.-+|.
T Consensus 229 lq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~--~r~~~~k~le~~~s~~~~mK~k--~d~~~~eL~rk~~E~~ 304 (775)
T PF10174_consen 229 LQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEA--DRDRLDKQLEVYKSHSLAMKSK--MDRLKLELSRKKSELE 304 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc--chHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 6888765433 2333344445566555544321111 1222333444444444443322 3444445566666777
Q ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 000927 459 ARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLK 538 (1222)
Q Consensus 459 ~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLK 538 (1222)
+...-|.-...........|+.-+..|-+--.....|..|++-++..++....++...+..+..+++|.+-+..==.+|+
T Consensus 305 ~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~ 384 (775)
T PF10174_consen 305 ALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLR 384 (775)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777788888888888888899999999999999999999999999999999998776544444566
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHH------------HHHHHHHHHHHHHHHHHHhHHHHhHH
Q 000927 539 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEIN------------KEQEKIADEKKKLEKLQHSAEERLKK 606 (1222)
Q Consensus 539 eEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~------------kE~~~I~eEre~lek~~~~E~erLK~ 606 (1222)
..+|.+=.....|.+.+|.|...-..=+ ..|++-++.|. -.++.-.-+++.+..-+...+++.-.
T Consensus 385 d~~d~~e~ki~~Lq~kie~Lee~l~ekd---~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~ 461 (775)
T PF10174_consen 385 DMLDKKERKINVLQKKIENLEEQLREKD---RQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEK 461 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655553322111 11222222222 33333333444444444444444444
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHH
Q 000927 607 EECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMN---QEAELLNRRDKMEK 675 (1222)
Q Consensus 607 Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkre---LE~~~~~r~EE~E~ 675 (1222)
++..=-+.|++++..+...-++|-..+ ||+..-+.-++.+-+.|.-+.+-+..+ |++.+++.++++++
T Consensus 462 e~~Eele~~~~e~~~lk~~~~~LQ~eL-sEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~k 532 (775)
T PF10174_consen 462 ERQEELETYQKELKELKAKLESLQKEL-SEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEK 532 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHH
Confidence 444444567777777777777777665 577777777777777766665555544 44666666666554
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.04 E-value=0.073 Score=64.39 Aligned_cols=97 Identities=25% Similarity=0.271 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Q 000927 534 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRD 613 (1222)
Q Consensus 534 qseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~ 613 (1222)
++++-+|...+.+..+..-.++.+|+.++.+-+. .|+|+|.+=++=...|+.++..= +++.+|..|.-.|..++=.
T Consensus 352 ~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~---~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~rel~Elks~lr 427 (546)
T PF07888_consen 352 RSQWAQEKQALQHSAEADKDEIEKLSRELQMLEE---HLQEERMERQKLEKQLGKEKDCN-RVQLSENRRELQELKSSLR 427 (546)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555555678888888888876 68999998887777777666443 6788888888888666655
Q ss_pred HHHHHHHHhhhcHHHHHHHHH
Q 000927 614 YVQREIEAIRLDKEAFEATMR 634 (1222)
Q Consensus 614 ~~krelE~L~~ekEsF~~~M~ 634 (1222)
-.+.|-|.|..++-..|.-|.
T Consensus 428 v~qkEKEql~~EkQeL~~yi~ 448 (546)
T PF07888_consen 428 VAQKEKEQLQEEKQELLEYIE 448 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556665555555555544443
No 23
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.01 E-value=0.12 Score=65.54 Aligned_cols=13 Identities=31% Similarity=0.532 Sum_probs=7.6
Q ss_pred hHHHHHHhhhhhH
Q 000927 159 REDNLRRALSMEK 171 (1222)
Q Consensus 159 REEnLkKALgvEK 171 (1222)
|.+=|.+.+|+++
T Consensus 156 r~~il~~l~~l~~ 168 (908)
T COG0419 156 RKEILDELFGLEK 168 (908)
T ss_pred HHHHHHHHhCchh
Confidence 4455666666665
No 24
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.78 E-value=0.26 Score=62.11 Aligned_cols=460 Identities=23% Similarity=0.368 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHHhHhhhhhcccceeeeccchhhhHHHHHHhHHHHHHHHHHhhhhhhhHHHHHHHhHHHHHHhhhhhHHH
Q 000927 94 EALMEKVSKLEKELYDYQYNMGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQC 173 (1222)
Q Consensus 94 ~aLia~iskLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~e~~~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqC 173 (1222)
..+..-|..|..|| --|.+|+-|.-+...-.+-|+.+.. ++-+..-+-|=++-|=-+..|
T Consensus 70 q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~E------------------ 129 (775)
T PF10174_consen 70 QKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRE------------------ 129 (775)
T ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHH------------------
Confidence 34455666666666 6666666555554444555555555 444433222211111111111
Q ss_pred HHHHHHHHHHHhhhhhhhhcccccchhhHHHHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHH
Q 000927 174 VADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKR 253 (1222)
Q Consensus 174 VadLEKAL~emr~E~AeiK~~sesKLaEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrR 253 (1222)
+..|-+.|-+|+..+.-.|-+-+..-.+...|.+-++.|-..++ +..-.+.+.+.+.+.+++-..|+
T Consensus 130 l~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~------------~~~~~~~~~~~~~~~e~~~~~le- 196 (775)
T PF10174_consen 130 LERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAE------------AEEEDNEALRRIREAEARIMRLE- 196 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc------------chhhhhHHHHHHHHHHHHHHHHH-
Confidence 12244677778888888888888877888888777766655541 11112334444444444443333
Q ss_pred HHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhH--HHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhh
Q 000927 254 ERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLS--ELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSK 331 (1222)
Q Consensus 254 erlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~--~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~ 331 (1222)
.-++.++.....-|+.| ..+++-..+.-. -.|..|...+.+|.+.++.+...+-++.-++..++.+..-
T Consensus 197 ------~lle~~e~~~~~~r~~l---~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~ 267 (775)
T PF10174_consen 197 ------SLLERKEKEHMEAREQL---HRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEAD 267 (775)
T ss_pred ------HHHHHHHHHhhhhhHHH---HHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 22222222222222211 112211111111 3577788888888888888877777777777766655543
Q ss_pred hHhhHHHHHH-HHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHHHH------HHHH------HHHHHHHHH----
Q 000927 332 LKEREDEINS-RLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERVE------IQKL------LDDQRAILD---- 394 (1222)
Q Consensus 332 Lk~keddi~~-rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~e------IQkL------ldeh~a~L~---- 394 (1222)
--...-.+.. +...+..|-+ +|..+..|..|..||..++-+|......- |..| ...|...|.
T Consensus 268 r~~~~k~le~~~s~~~~mK~k-~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve 346 (775)
T PF10174_consen 268 RDRLDKQLEVYKSHSLAMKSK-MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVE 346 (775)
T ss_pred hHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2111111221 1233333333 66666777777777777777776655422 2221 112222222
Q ss_pred ---HhhhHHHHHHHHHhhhHHH----------HHHHHHHHHhhhhhhh-------hhhHHHHHHHHHHHHHhhhHHH---
Q 000927 395 ---AKQQEFELELEEKRKSIEE----------EMRSKISALDQQEFEI-------SHREEKLERREQALDKKSDRVK--- 451 (1222)
Q Consensus 395 ---~Kk~eFElElE~kRKs~ee----------el~~K~~~~e~rEvel-------~h~Eekl~krEqaLe~k~~~lk--- 451 (1222)
.+.-+-+..++++.+++.. ||.-...-++..+..| -..++.|.++...|+.-..+|.
T Consensus 347 ~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~ 426 (775)
T PF10174_consen 347 ALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQA 426 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1222222233333333222 2222222333333333 3344445555555555555554
Q ss_pred --HHHHHHHHHH-hhHHHHHHhHHHHHHH---HH-HHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------
Q 000927 452 --EKENDLAARL-KSVKEREKFVKAEEKK---LE-LEKQKLIADKESLQILKVEIDQIESENAQQELQIQEE-------- 516 (1222)
Q Consensus 452 --eKEkdl~~K~-k~LKEkEksL~aeEK~---lE-~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee-------- 516 (1222)
-......+++ +++.++++.+...... .+ .....|..-+.++..++..++.+...+.+.-.++...
T Consensus 427 d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~ 506 (775)
T PF10174_consen 427 DSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLA 506 (775)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHh
Confidence 1111111111 2334444333332110 00 0012222233333333333333333333333222221
Q ss_pred ---------Hhhhhcc-HHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 000927 517 ---------CQKLKIN-EEEKSELLRLQSQLKQ----------------QIETYRHQQELLLKEHEDLQQDREKFEKEWE 570 (1222)
Q Consensus 517 ---------~e~Lkit-eeER~E~l~LqseLKe----------------EIe~~R~Qke~LlkEae~Lk~ekekFE~EWE 570 (1222)
.++|.|. +.-|.+|..|+++|+. ++..+|.....-..|+|+|..-..+-|.|=.
T Consensus 507 s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~ 586 (775)
T PF10174_consen 507 SSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKN 586 (775)
T ss_pred hccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222221 2234555555555543 4445555556667788888887778888888
Q ss_pred hhHHhHHHHHHHHHH----HHHHHHHHHHH
Q 000927 571 VLDEKRDEINKEQEK----IADEKKKLEKL 596 (1222)
Q Consensus 571 ~LDEKR~el~kE~~~----I~eEre~lek~ 596 (1222)
.++-|-.+|.++++. ++...+.....
T Consensus 587 ~ke~ki~~LekeLek~~~~~~~~~~~~~~~ 616 (775)
T PF10174_consen 587 DKEKKIGELEKELEKAQMHLAKQQETVEAT 616 (775)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhhhhhhh
Confidence 888888889888655 45555555543
No 25
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.73 E-value=6.7e-06 Score=102.24 Aligned_cols=510 Identities=23% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhcccccchhhHHHHhhhhccchhHH-------HhhhhhHH
Q 000927 152 AFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEV-------EEKFHAAE 224 (1222)
Q Consensus 152 ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKLaEA~aLv~~~eeKslEv-------E~Kl~aAe 224 (1222)
.|-+..-|=+.|.--|.-|++--+--||+-++|..|+.+++---+-......+.++-.-++-.|+ |.--..-+
T Consensus 40 ~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e 119 (859)
T PF01576_consen 40 KIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHE 119 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666777777777777888888888888877655555544444444333332222 22234456
Q ss_pred HHHHHhhccchHHHhHH----HHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhH
Q 000927 225 AKLAEVNRKSSELEMKL----QELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQR 300 (1222)
Q Consensus 225 aklAEa~Rk~s~~eRkL----~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqR 300 (1222)
+.++++-++|+.+--.| ..+.---..|.+.+-.|..|.+....++..-=..-..-+|..+..+.-|.+++.-+..-
T Consensus 120 ~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~ 199 (859)
T PF01576_consen 120 ATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEES 199 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 77788888886553332 22222223344444445555554444444333334455677777777777777777777
Q ss_pred HhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHHH
Q 000927 301 EVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERV 380 (1222)
Q Consensus 301 Ee~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~ 380 (1222)
+..+++........+.++.++...++.....+. .|+ + ....-+..|..+...|..
T Consensus 200 er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~-----------~l~-r---------~k~~L~~qLeelk~~lee---- 254 (859)
T PF01576_consen 200 ERQRNELTEQKAKLQSENSELTRQLEEAESQLS-----------QLQ-R---------EKSSLESQLEELKRQLEE---- 254 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH-H---------HHHHHHHHHHhhHHHHHh----
Confidence 777776666666666666666666555444331 111 0 001112233333333221
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHH---HhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000927 381 EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISA---LDQQEFEISHREEKLERREQALDKKSDRVKEKENDL 457 (1222)
Q Consensus 381 eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~---~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl 457 (1222)
++. .+..|..+.+..+.+++..|..++++-.+|... +..-..+|..|-.++ +.....+.+.|.+--+.|
T Consensus 255 Etr-----~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~---e~e~~~~~EelEeaKKkL 326 (859)
T PF01576_consen 255 ETR-----AKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKY---EEEAEQRTEELEEAKKKL 326 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hhh-----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHH---HHHhhhhHHHHHHHHHHH
Confidence 111 235677788888888998998888888777542 233344444443332 344444556666667778
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Q 000927 458 AARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIES---ENAQQELQIQEECQKLKINEEEKSELLRLQ 534 (1222)
Q Consensus 458 ~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a---~~e~q~~qi~ee~e~LkiteeER~E~l~Lq 534 (1222)
..++..+.+.-..+.+.--.|+.-+..|..+-+.+.. +|++..+ .++....+++.....++ .. .
T Consensus 327 ~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~---eLe~~~~~~~~LeKKqr~fDk~l~e~k------~~----~ 393 (859)
T PF01576_consen 327 ERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTS---ELEKAQAAAAELEKKQRKFDKQLAEWK------AK----V 393 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHH------HH----H
Confidence 8888888888888888888888888888887766654 5555544 55666666664433332 22 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Q 000927 535 SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY 614 (1222)
Q Consensus 535 seLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~ 614 (1222)
..+..+.|.+-.....+..++-.|+.+.......++.|.-....|+.|+.++..+.-...+-+| +-++.+. .
T Consensus 394 ~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~-eLek~kr-------~ 465 (859)
T PF01576_consen 394 EELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH-ELEKAKR-------R 465 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH-HHHHHHH-------H
Confidence 3455666777777777777777788777777777777777777777777777655433322221 1111111 1
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000927 615 VQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLND 694 (1222)
Q Consensus 615 ~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~ 694 (1222)
+..+++.|..+=+.-. +-+...|..+.-|+..|+.-+-++++.|.+|+..|+..|..=...
T Consensus 466 LE~e~~El~~~leE~E-------------------~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~ 526 (859)
T PF01576_consen 466 LEQEKEELQEQLEEAE-------------------DALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQ 526 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHH
Confidence 1111111111111111 222345566777888899999999999999999999977654444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHH
Q 000927 695 IAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELD 745 (1222)
Q Consensus 695 In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~ 745 (1222)
|-.|..-+..| -+.|.++.-.|++|+.+..+|.--++..+
T Consensus 527 l~~le~~LE~E-----------~k~r~~~~r~kkKLE~~l~eLe~~ld~~n 566 (859)
T PF01576_consen 527 LESLEAELEEE-----------RKERAEALREKKKLESDLNELEIQLDHAN 566 (859)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44443333222 23344555555666555555544444433
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.71 E-value=0.43 Score=62.56 Aligned_cols=89 Identities=16% Similarity=0.235 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HhhhH-HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHH
Q 000927 537 LKQQIETYRHQQELLLKEHEDLQQDREKFEKE----WEVLD-EKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAM 611 (1222)
Q Consensus 537 LKeEIe~~R~Qke~LlkEae~Lk~ekekFE~E----WE~LD-EKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~ 611 (1222)
+++....+..+...|..+...+++++..|..+ |-.+. ++.+..+.-...+..+.+.+..-+.......+.++..+
T Consensus 676 ~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~l 755 (1201)
T PF12128_consen 676 KEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKEL 755 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555443 22222 44455555556666777777777777788888888888
Q ss_pred HHHHHHHHHHhhhc
Q 000927 612 RDYVQREIEAIRLD 625 (1222)
Q Consensus 612 r~~~krelE~L~~e 625 (1222)
+..|..+|.+-=..
T Consensus 756 e~~~~~eL~~~GvD 769 (1201)
T PF12128_consen 756 EQQYNQELAGKGVD 769 (1201)
T ss_pred HHHHHHHHHhCCCC
Confidence 88888877654444
No 27
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.13 Score=63.76 Aligned_cols=209 Identities=23% Similarity=0.354 Sum_probs=110.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhhhh---hhh--hHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHhhHHHHHHhHHHHH
Q 000927 402 LELEEKRKSIEEEMRSKISALDQQEFE---ISH--REEKLERREQALDKKSDRVKEKENDLA-ARLKSVKEREKFVKAEE 475 (1222)
Q Consensus 402 lElE~kRKs~eeel~~K~~~~e~rEve---l~h--~Eekl~krEqaLe~k~~~lkeKEkdl~-~K~k~LKEkEksL~aeE 475 (1222)
+|||..|+-+++.-+..+..++++|.+ -+. +-++-.|++-+|++++++--+.|..-+ .+-|.+..+|-.-+-.|
T Consensus 327 aELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElE 406 (1118)
T KOG1029|consen 327 AELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELE 406 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544444444444332 122 223334556667777777666654332 22333333333222222
Q ss_pred HH--HHHHH-------HHHHhhHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHH
Q 000927 476 KK--LELEK-------QKLIADKESLQILKV---EIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIET 543 (1222)
Q Consensus 476 K~--lE~ek-------~~L~~dkEel~~lK~---elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~ 543 (1222)
|. |+-++ +|...+.+.|-.+|+ .++--+..|..++.++..-.....+- -..-|++|+.
T Consensus 407 kqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~----------~tt~kt~ie~ 476 (1118)
T KOG1029|consen 407 KQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVD----------ITTQKTEIEE 476 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheec----------cchHHHHHHH
Confidence 21 11111 122223333333322 23333334444444444333322211 1245899999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH-------------HhHHHHhHHHHHH
Q 000927 544 YRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQ-------------HSAEERLKKEECA 610 (1222)
Q Consensus 544 ~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~-------------~~E~erLK~Ek~~ 610 (1222)
++-|.+..+.|.+.|+++.. |++.-+.+++-||..|..-+ +++-+++...|+.
T Consensus 477 ~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~ 542 (1118)
T KOG1029|consen 477 VTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKEL 542 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHH
Confidence 99999999999999988754 34444555555555554322 4566777778888
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHH
Q 000927 611 MRDYVQREIEAIRLDKEAFEATMR 634 (1222)
Q Consensus 611 ~r~~~krelE~L~~ekEsF~~~M~ 634 (1222)
++.+|+..++.|+-+.+|=.+.|.
T Consensus 543 irq~ikdqldelskE~esk~~eid 566 (1118)
T KOG1029|consen 543 IRQAIKDQLDELSKETESKLNEID 566 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888888888887777666665
No 28
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.29 E-value=5.7e-05 Score=94.21 Aligned_cols=308 Identities=23% Similarity=0.313 Sum_probs=0.0
Q ss_pred hcHHHHHHHHHHHHHhHhhhhh-------cccceeeeccchhhhHHHHHHhHHHHHHHHHHhhhhhhhHHHHHHHhHHHH
Q 000927 91 KDREALMEKVSKLEKELYDYQY-------NMGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNL 163 (1222)
Q Consensus 91 kd~~aLia~iskLE~ElydYQy-------nMGLLLiEkKEwtSk~eel~qa~~e~~~~lKREqaAhl~ALsEaeKREEnL 163 (1222)
+.+..|.....+|++|+-++.. ..+-|--.+.-|.+..++++..+.+- .+.+.+-...|..++.-=+.|
T Consensus 201 r~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeE----tr~k~~L~~~l~~le~e~~~L 276 (859)
T PF01576_consen 201 RQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEE----TRAKQALEKQLRQLEHELEQL 276 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH----hhhhhhhHHHHHHHHHHHHHH
Confidence 3445566666777777665544 44555555666666666666655443 122222233455566666789
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhhhhhhcccccchhhHHHHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHH
Q 000927 164 RRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQE 243 (1222)
Q Consensus 164 kKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKLaEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~e 243 (1222)
+..|.-|-.+...|++.|.-+..+++.+|--++.-.. ..+..+++=---...+|..+...+-+++.+.+.+++.-+-
T Consensus 277 ~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~---~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~r 353 (859)
T PF01576_consen 277 REQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAE---QRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKR 353 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998877665333 3233333322223456666666666666666666665555
Q ss_pred hhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHh
Q 000927 244 LESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEK 323 (1222)
Q Consensus 244 vEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~k 323 (1222)
+..=-.+|.-+.-...+-+...++...+.-..|.+|..++......+-..++-....+-.++ .....|+++.-
T Consensus 354 L~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~-------~Lk~~lee~~e 426 (859)
T PF01576_consen 354 LQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELF-------KLKNELEELQE 426 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHhhhHHHHH
Confidence 54444455555555556666677766666678889988888777777777766666666555 44555555555
Q ss_pred hhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHhhhHH
Q 000927 324 KIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAIL---DAKQQEF 400 (1222)
Q Consensus 324 kie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L---~~Kk~eF 400 (1222)
.++......+...++|.-=...+..-.+.+..++...-..|. +..+++.-|++.+..| +.++.-|
T Consensus 427 ~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~------------e~~El~~~leE~E~~l~~~E~~~lRl 494 (859)
T PF01576_consen 427 QLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQ------------EKEELQEQLEEAEDALEAEEQKKLRL 494 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444444444332222222223333333332222232 2345566666665554 4578889
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Q 000927 401 ELELEEKRKSIEEEMRSKISALDQ 424 (1222)
Q Consensus 401 ElElE~kRKs~eeel~~K~~~~e~ 424 (1222)
+++|.+.|.-++-+|..|-.+++.
T Consensus 495 ~~el~~~r~e~er~l~eKeeE~E~ 518 (859)
T PF01576_consen 495 QVELQQLRQEIERELQEKEEEFEE 518 (859)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999998888777777666554
No 29
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.23 E-value=1.8 Score=58.64 Aligned_cols=573 Identities=20% Similarity=0.271 Sum_probs=269.0
Q ss_pred HHHHHHHHHHHHhHhhhhhcccceeeeccchh----------------hhHHHHHHhHHHHHHHHHHhhhhhhhHHHHHH
Q 000927 94 EALMEKVSKLEKELYDYQYNMGLLLIEKKEWT----------------SKIEELRQSFEETQEILKREQSAHLIAFSEAE 157 (1222)
Q Consensus 94 ~aLia~iskLE~ElydYQynMGLLLiEkKEwt----------------Sk~eel~qa~~e~~~~lKREqaAhl~ALsEae 157 (1222)
..+-++|..|++++-+---+.--||=|+..|. |..++..+..+ .+..+...+...=....|..
T Consensus 575 ~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~-~e~~l~qLe~~le~~~~E~~ 653 (1822)
T KOG4674|consen 575 NEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRA-KEKRLRQLENELESYKKEKR 653 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchh-HHHHHHHHHHHHHHHHHHHH
Confidence 56778899999988766666666666666652 11111111111 11112222222222233333
Q ss_pred HhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhh---cccccchhhHHHHhh-------hhccchhHHHhhhhhHHHHH
Q 000927 158 KREDNLRRALSMEKQCVADLEKALRDMGEERAQTK---LFSEKTLTDANTLLG-------GIEGKSLEVEEKFHAAEAKL 227 (1222)
Q Consensus 158 KREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK---~~sesKLaEA~aLv~-------~~eeKslEvE~Kl~aAeakl 227 (1222)
++...|.+. +.+|.+-..+||.+.--++ -.|.-|+.-++--|+ .+.+....+..=++..+...
T Consensus 654 ~~~~~l~e~-------~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~ 726 (1822)
T KOG4674|consen 654 ENLKKLQED-------FDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTV 726 (1822)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222 2344444444454442222 112223333333332 23344444455567777777
Q ss_pred HHhhccchHHHhHHHHhhhhHHHHHHHHhhhH-------hHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhH
Q 000927 228 AEVNRKSSELEMKLQELESRESVIKRERLSLV-------TEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQR 300 (1222)
Q Consensus 228 AEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~-------~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqR 300 (1222)
..++--...+..++.-+++.=+.|+.+-..|. .|++++....+.++-+|...+-.....++-....+..+++|
T Consensus 727 ~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~ 806 (1822)
T KOG4674|consen 727 HTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESR 806 (1822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888889999998888888876654 45555555555555555555554444444444554444432
Q ss_pred HhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHH----HHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhh
Q 000927 301 EVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRL----AELVVKEREADCLRSTVEMKEKRLLTIEEKLNA 376 (1222)
Q Consensus 301 Ee~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rl----~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~a 376 (1222)
+...+.+|..+++++......++....+++.-| ..+..-....+.+...|......+..++-+++.
T Consensus 807 ----------i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~e 876 (1822)
T KOG4674|consen 807 ----------IKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSE 876 (1822)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 224566666677766666666655544433222 222222333333333333333333333333333
Q ss_pred HH----HHHHHHHHHHH---HHHHHHhhhHHHHHHHHH---hhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 000927 377 RE----RVEIQKLLDDQ---RAILDAKQQEFELELEEK---RKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKK 446 (1222)
Q Consensus 377 RE----~~eIQkLldeh---~a~L~~Kk~eFElElE~k---RKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k 446 (1222)
=+ .+.++.+..++ .....-+-..|..++++- +..| .-..-.|....+.+..-+++|+.-
T Consensus 877 L~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L-----------~~a~s~i~~yqe~~~s~eqsl~~~ 945 (1822)
T KOG4674|consen 877 LEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEEL-----------TDALSQIREYQEEYSSLEQSLESV 945 (1822)
T ss_pred HHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 36667776666 333333344466666544 3222 222333444444455555555554
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH-------------------------HHHHHHhhHHHHHHHHHHHHH
Q 000927 447 SDRVKEKENDLAARLKSVKEREKFVKAEEKKLEL-------------------------EKQKLIADKESLQILKVEIDQ 501 (1222)
Q Consensus 447 ~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~-------------------------ek~~L~~dkEel~~lK~elEK 501 (1222)
--++.+--.++++++..++.+=-+|...--.|.. +...++.+..++.....+..+
T Consensus 946 ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~ 1025 (1822)
T KOG4674|consen 946 KSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANE 1025 (1822)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555544444433333221111222 222222333333333222222
Q ss_pred HHhHHHHHHHHHHHHHhhhhccHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Q 000927 502 IESENAQQELQIQEECQKLKINEEEKS----ELLRL---QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDE 574 (1222)
Q Consensus 502 ~~a~~e~q~~qi~ee~e~LkiteeER~----E~l~L---qseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDE 574 (1222)
....+.+++. .+.+.+........ .|..+ =.+|+++..+|-.+-..|-+..+-+...-..|++-|. |
T Consensus 1026 ~~~~~k~dl~---~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~---E 1099 (1822)
T KOG4674|consen 1026 QIEDLQNDLK---TETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWS---E 1099 (1822)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchH---H
Confidence 2222222222 22222222222111 11111 1356677777777777777777777777788888885 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHhHHHHhHHHH-----HHH---HHHHHHHHHHhhhcHHHHHHH---HHHHHHHH
Q 000927 575 KRDEINKEQEKIADEKKKLEKL---QHSAEERLKKEE-----CAM---RDYVQREIEAIRLDKEAFEAT---MRHEQLVL 640 (1222)
Q Consensus 575 KR~el~kE~~~I~eEre~lek~---~~~E~erLK~Ek-----~~~---r~~~krelE~L~~ekEsF~~~---M~hE~s~~ 640 (1222)
++.-|..|.......=+-|+.. +|+=-+.|-.-- .+| ..++.+=+-.|+++++-|.++ |..|-..+
T Consensus 1100 ~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L 1179 (1822)
T KOG4674|consen 1100 KEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENARL 1179 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHH
Confidence 5555555554443333333322 222111111110 001 233556666788888888665 34444444
Q ss_pred HHHHH---HHHHHHHHHHHHhhhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000927 641 SEKAK---NDRRKMLEEFEMQRMNQEA---------ELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVA 702 (1222)
Q Consensus 641 ~ek~q---~Erad~l~d~E~qkreLE~---------~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke~a 702 (1222)
..++. +...|+.+-+-.-+-.-.. .|.+.-+.| +-|.|=-+.|.++.++.++.|.-|.+.+
T Consensus 1180 ~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~v-Nll~EsN~~LRee~~~~~~k~qEl~~~i 1252 (1822)
T KOG4674|consen 1180 KQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEV-NLLRESNKVLREENEANLEKIQELRDKI 1252 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 2333333333322222210 111111111 2344566667777777777776555544
No 30
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.13 E-value=1.5 Score=56.68 Aligned_cols=104 Identities=23% Similarity=0.268 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 000927 492 LQILKVEIDQIESENAQQELQIQEECQKL-KINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWE 570 (1222)
Q Consensus 492 l~~lK~elEK~~a~~e~q~~qi~ee~e~L-kiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE 570 (1222)
+...-..+.+.+.....-.++|....+.+ .-+..++.+..---..|++||+++..|...|-.|.++++..-..=+.|-+
T Consensus 360 ~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~ 439 (1074)
T KOG0250|consen 360 IREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKE 439 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333334444444444444444444444 44444555444444556666666666666666666666666555555555
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHH
Q 000927 571 VLDEKRDEINKEQEKIADEKKKLEK 595 (1222)
Q Consensus 571 ~LDEKR~el~kE~~~I~eEre~lek 595 (1222)
.+..+...|.+-...+..+=..|.+
T Consensus 440 ~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 440 HIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5655555666655555544444333
No 31
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=1.3 Score=57.16 Aligned_cols=107 Identities=29% Similarity=0.460 Sum_probs=73.9
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHH---HHHHHHHhH
Q 000927 527 KSELLRLQ---SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK---KLEKLQHSA 600 (1222)
Q Consensus 527 R~E~l~Lq---seLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre---~lek~~~~E 600 (1222)
|-+|+... +.++..|........-..+.+..++.+-++|+++|..++-++++..+|.+.+...|- ++..-+..|
T Consensus 288 rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~e 367 (1141)
T KOG0018|consen 288 RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEE 367 (1141)
T ss_pred hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHH
Confidence 55555322 223344444455555666778889999999999999999999999999999887554 556666678
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 000927 601 EERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHE 636 (1222)
Q Consensus 601 ~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE 636 (1222)
.+|||.+-+..- ..+|+.|.+...+=-++..|+
T Consensus 368 y~rlk~ea~~~~---~~el~~ln~~~r~~~~~ld~~ 400 (1141)
T KOG0018|consen 368 YERLKEEACKEA---LEELEVLNRNMRSDQDTLDHE 400 (1141)
T ss_pred HHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhhH
Confidence 888887765544 666777666655544444443
No 32
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.06 E-value=2.5 Score=57.08 Aligned_cols=108 Identities=19% Similarity=0.319 Sum_probs=59.6
Q ss_pred hhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhh
Q 000927 218 EKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTL 297 (1222)
Q Consensus 218 ~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~L 297 (1222)
.|+..|..++..+..+...++..+.+++.+...|++++-....-....+ ++...-..+..+...|.+...++......+
T Consensus 293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeL 371 (1486)
T PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVV 371 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666777777777777776655543333222 222333444455555555555555555555
Q ss_pred hhHHhhhhhhHHHHHHhhhhHHHHHhhhh
Q 000927 298 NQREVKANENERILKQKERDLEELEKKID 326 (1222)
Q Consensus 298 NqREe~~~E~~~~lk~kekeLEe~~kkie 326 (1222)
.+-.+.+.+....+...+.++..++..+.
T Consensus 372 eeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 372 EEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555554443
No 33
>PRK11637 AmiB activator; Provisional
Probab=96.91 E-value=0.91 Score=53.04 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 000927 638 LVLSEKAKNDRRKMLEEFEMQRMNQEA 664 (1222)
Q Consensus 638 s~~~ek~q~Erad~l~d~E~qkreLE~ 664 (1222)
..++..+.+-+.+++..|.-.+..|+.
T Consensus 158 ~~~l~~i~~~d~~~l~~l~~~~~~L~~ 184 (428)
T PRK11637 158 LAYFGYLNQARQETIAELKQTREELAA 184 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777888887777776663
No 34
>PRK11637 AmiB activator; Provisional
Probab=96.89 E-value=0.44 Score=55.64 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHH
Q 000927 344 AELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQR 390 (1222)
Q Consensus 344 ~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~ 390 (1222)
..|...+.++..++..+...+.+|..++.+|..+...-=+.+-.-+.
T Consensus 89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 89 RKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555555555555555544433333333333
No 35
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.86 E-value=0.35 Score=52.61 Aligned_cols=166 Identities=28% Similarity=0.326 Sum_probs=89.0
Q ss_pred ccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhh
Q 000927 210 EGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDER 289 (1222)
Q Consensus 210 eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eer 289 (1222)
+.++-+++.++..|++-.+-++|+-..++-.|..++.|=.......-.+....+..+..+..-...+..=.-++.+.+.+
T Consensus 21 ~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~ 100 (237)
T PF00261_consen 21 EEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQ 100 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444333333333333333333332222222222222222222334556666777
Q ss_pred hHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHH---HHHHHHHHHHHHHHHHhhhHHhhHHh
Q 000927 290 LSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEIN---SRLAELVVKEREADCLRSTVEMKEKR 366 (1222)
Q Consensus 290 L~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~---~rl~~L~~kEke~~~~~~~Le~KEke 366 (1222)
|-+....+..-+.+.-|..+-|...+.+|+.+...++..-..++..+..|. ..|..|-..+..+..+. +.-|..
T Consensus 101 l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re---~~~e~~ 177 (237)
T PF00261_consen 101 LKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASERE---DEYEEK 177 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHH---HHHHHH
Confidence 777777777777888888888888888888888888888888888887754 44555555554444333 344455
Q ss_pred HHHHHHHHhhHH
Q 000927 367 LLTIEEKLNARE 378 (1222)
Q Consensus 367 Ll~leEKL~aRE 378 (1222)
+..|..+|..=|
T Consensus 178 i~~L~~~lkeaE 189 (237)
T PF00261_consen 178 IRDLEEKLKEAE 189 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554433
No 36
>PRK12704 phosphodiesterase; Provisional
Probab=96.77 E-value=0.074 Score=64.03 Aligned_cols=80 Identities=24% Similarity=0.419 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHH
Q 000927 397 QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEK 476 (1222)
Q Consensus 397 k~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK 476 (1222)
+.+++.|+...|..++.++..+ +.+|..+|..|.+|+..|+.+.+.|..+++.|..+-+.|..+++.|...++
T Consensus 59 ~leaeeE~~~~R~Ele~e~~~~-------e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~ 131 (520)
T PRK12704 59 LLEAKEEIHKLRNEFEKELRER-------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555444433 444566666677777777777777777777777666666666666555554
Q ss_pred HHHHHHH
Q 000927 477 KLELEKQ 483 (1222)
Q Consensus 477 ~lE~ek~ 483 (1222)
+++.-+.
T Consensus 132 ~~~~~~~ 138 (520)
T PRK12704 132 ELEELIE 138 (520)
T ss_pred HHHHHHH
Confidence 4443333
No 37
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=3.4 Score=54.07 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 000927 493 QILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVL 572 (1222)
Q Consensus 493 ~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~L 572 (1222)
..+..++.++..++..-..++.+....+.+.++|=.-|+..+..+..-.+.+-.+..-+++..++.+..--....+...+
T Consensus 475 ~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~ 554 (1293)
T KOG0996|consen 475 EGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSL 554 (1293)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34667888888888889999999999999999998888888888888888888777777777777777777777777777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH--HHHHHhhhcHHH
Q 000927 573 DEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ--REIEAIRLDKEA 628 (1222)
Q Consensus 573 DEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~k--relE~L~~ekEs 628 (1222)
--+..++.+++.....+=..+...++.=+.++-.-+..|...-. +=|.+|.+.+++
T Consensus 555 k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kes 612 (1293)
T KOG0996|consen 555 KQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKES 612 (1293)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
Confidence 77777777777777666665655555444444444443332221 235666666654
No 38
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.54 E-value=1.5 Score=47.82 Aligned_cols=108 Identities=22% Similarity=0.305 Sum_probs=51.2
Q ss_pred hhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHH
Q 000927 213 SLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSE 292 (1222)
Q Consensus 213 slEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~ 292 (1222)
...+...+-.|...+..+..+-..+..++..+++.-..|.|..-.+..+.+..+..+. .-..+|...+.++-+
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~-------~~~~kL~~~e~~~de 75 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLE-------EATEKLEEAEKRADE 75 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC-------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3334444444444445555555555666666666666676666666555554444333 333333333333333
Q ss_pred HHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhh
Q 000927 293 LRRTLNQREVKANENERILKQKERDLEELEKKIDL 327 (1222)
Q Consensus 293 ~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~ 327 (1222)
..+.+..=|.+....+.-+...+..|.++....+.
T Consensus 76 ~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee 110 (237)
T PF00261_consen 76 SERARKVLENREQSDEERIEELEQQLKEAKRRAEE 110 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444333
No 39
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.44 E-value=0.15 Score=61.45 Aligned_cols=76 Identities=29% Similarity=0.480 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHH
Q 000927 397 QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEK 476 (1222)
Q Consensus 397 k~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK 476 (1222)
+.+++-|+..+|..++.+++.+ +.+|..+|..|.+|+..|+.+.+.|..+++.|+.+.+.|..+++.|...++
T Consensus 53 ~~EaeeE~~~~R~Ele~el~~~-------e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~ 125 (514)
T TIGR03319 53 LLEAKEEVHKLRAELERELKER-------RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555665555555443 444555556666666666666666666666666666666666665554444
Q ss_pred HHH
Q 000927 477 KLE 479 (1222)
Q Consensus 477 ~lE 479 (1222)
++.
T Consensus 126 e~~ 128 (514)
T TIGR03319 126 ELE 128 (514)
T ss_pred HHH
Confidence 433
No 40
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.38 E-value=2.2 Score=47.31 Aligned_cols=248 Identities=25% Similarity=0.346 Sum_probs=122.3
Q ss_pred hhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhh
Q 000927 245 ESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKK 324 (1222)
Q Consensus 245 EaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kk 324 (1222)
+.--..||+..-.+..|+...+-.+..-+..+.++..++... .......+.++..+++.
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e---------------------~~~~~~le~el~~lrk~ 111 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE---------------------LAERKDLEEELESLRKD 111 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhhhhh
Confidence 344456777777777777777777777777777777777654 33444556667777777
Q ss_pred hhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHhhhHHHHH
Q 000927 325 IDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERVEIQK-LLDDQRAILDAKQQEFELE 403 (1222)
Q Consensus 325 ie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQk-Lldeh~a~L~~Kk~eFElE 403 (1222)
++.+.......+..|..--. ++.-++ ..-+.++..|...+...-.+++.. --.+-..+|..=+.+|+..
T Consensus 112 ld~~~~~r~~le~~i~~L~e-------El~fl~---~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~ 181 (312)
T PF00038_consen 112 LDEETLARVDLENQIQSLKE-------ELEFLK---QNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEI 181 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHTTSTT----------------HHHHHHHHHHHHHHH
T ss_pred hhhhhhhHhHHHHHHHHHHH-------HHHHHH---hhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHH
Confidence 77666555433333322221 222222 234566667766665222233221 1122344455555677777
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHhhHHHHHHhHHHHHHHHHH
Q 000927 404 LEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKEN---DLAARLKSVKEREKFVKAEEKKLEL 480 (1222)
Q Consensus 404 lE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEk---dl~~K~k~LKEkEksL~aeEK~lE~ 480 (1222)
+...|..++.-...|+.++... +..-..++..-...+.+... .|...+..|+.+- .+.++.|..
T Consensus 182 ~~~~~~e~e~~y~~k~~~l~~~----------~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~---~~Le~~l~~ 248 (312)
T PF00038_consen 182 AQKNREELEEWYQSKLEELRQQ----------SEKSSEELESAKEELKELRRQIQSLQAELESLRAKN---ASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred Hhhhhhhhhhhccccccccccc----------ccccccccchhHhHHHHHHhhhhHhhhhhhccccch---hhhhhhHHH
Confidence 7777777777777777665542 11222222222222222222 2222222222222 222222222
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 481 EKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRH 546 (1222)
Q Consensus 481 ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~ 546 (1222)
-...+..+...+ .+.+..-..+|.+-+..+.-.-.|-.+++...+.|-.||..||.
T Consensus 249 le~~~~~~~~~~----------~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 249 LEQRLDEEREEY----------QAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 222222222222 22222222222333333333445667899999999999999996
No 41
>PRK00106 hypothetical protein; Provisional
Probab=96.37 E-value=0.43 Score=58.08 Aligned_cols=76 Identities=26% Similarity=0.457 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHH
Q 000927 397 QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEK 476 (1222)
Q Consensus 397 k~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK 476 (1222)
+.+++-|+..+|..++.++...... |..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.|...++
T Consensus 74 ~lEaeeEi~~~R~ElEkel~eEr~r-------L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~ 146 (535)
T PRK00106 74 LLEAKEEARKYREEIEQEFKSERQE-------LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREE 146 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555444433333 444444555555555555555555555555555555555544444443
Q ss_pred HHH
Q 000927 477 KLE 479 (1222)
Q Consensus 477 ~lE 479 (1222)
+++
T Consensus 147 ~~~ 149 (535)
T PRK00106 147 QVE 149 (535)
T ss_pred HHH
Confidence 333
No 42
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=4.8 Score=50.95 Aligned_cols=252 Identities=24% Similarity=0.323 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhHH
Q 000927 489 KESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIE----------TYRHQQELLLKEHEDL 558 (1222)
Q Consensus 489 kEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe----------~~R~Qke~LlkEae~L 558 (1222)
++.+.+=.++||+-|-.+++|.++-.++.++++--+.+|-+-.|++.+=|.+++ --|...++=-||.++.
T Consensus 319 keNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~r 398 (1118)
T KOG1029|consen 319 KENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERR 398 (1118)
T ss_pred HHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666666666666655555555444443333 3333444444555554
Q ss_pred HHHHHHHHH----HHhhhHH--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH----------HHHHHHh
Q 000927 559 QQDREKFEK----EWEVLDE--KRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYV----------QREIEAI 622 (1222)
Q Consensus 559 k~ekekFE~----EWE~LDE--KR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~----------krelE~L 622 (1222)
..-|+-.|+ |||-.-- =-..-.+|++.|--++.+...++ -|.+-|.-....+...+ +.+++.+
T Consensus 399 Eaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~-~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~ 477 (1118)
T KOG1029|consen 399 EAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQ-QELETLNFKLQQLSGKLQDVRVDITTQKTEIEEV 477 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhheeccchHHHHHHHh
Confidence 444444443 6775421 12223456666666555554433 34444444444433222 3455555
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000927 623 RLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVA 702 (1222)
Q Consensus 623 ~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke~a 702 (1222)
.-.++--|+.| +.+.-+|| |-..+|.-+--.|..|+..+.+.|-.. .++ .-+..+|+..-.-|+.+
T Consensus 478 ~~q~e~~isei----~qlqarik-E~q~kl~~l~~Ekq~l~~qlkq~q~a~----~~~-----~~~~s~L~aa~~~ke~i 543 (1118)
T KOG1029|consen 478 TKQRELMISEI----DQLQARIK-ELQEKLQKLAPEKQELNHQLKQKQSAH----KET-----TQRKSELEAARRKKELI 543 (1118)
T ss_pred hhHHHHHHHHH----HHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHhhhhc----cCc-----chHHHHHHHHHHHHHHH
Confidence 55444444444 44444443 344455555555666666655433211 000 01122232222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhH-hHHHH
Q 000927 703 EGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYG-DREQF 758 (1222)
Q Consensus 703 ~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~-qRE~~ 758 (1222)
..-+.+ ....|.+|..--..+-+-++.|..+++.|.-.+-...++|.+ -|..+
T Consensus 544 rq~ikd---qldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ 597 (1118)
T KOG1029|consen 544 RQAIKD---QLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKL 597 (1118)
T ss_pred HHHHHH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222 223344444333333344555666677776666665555554 44443
No 43
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.28 E-value=6 Score=51.27 Aligned_cols=224 Identities=19% Similarity=0.226 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH--HHHhHHH--HhHHHHHHHHHHH
Q 000927 540 QIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK--LQHSAEE--RLKKEECAMRDYV 615 (1222)
Q Consensus 540 EIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek--~~~~E~e--rLK~Ek~~~r~~~ 615 (1222)
+-+..|+|-++|+.|---|.-+.+..-.-|++|--=-+.=.-+.+.+.-+.+.|+. .++.+-+ ++=..-...+.
T Consensus 316 erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqs-- 393 (1195)
T KOG4643|consen 316 ERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQS-- 393 (1195)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhh--
Confidence 44566677777777777777777777777776543111111133334444444443 2221111 11000000100
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHH--
Q 000927 616 QREIEAIRLDKEAFEATMRHEQLVLSEKAK---NDRRKMLEEFEMQRMNQEAELLN---RRDKMEKELQERTRTFEEK-- 687 (1222)
Q Consensus 616 krelE~L~~ekEsF~~~M~hE~s~~~ek~q---~Erad~l~d~E~qkreLE~~~~~---r~EE~E~~L~EREk~FEee-- 687 (1222)
.++|.+- |=+-.|+-||--|+-|+. .... +.--|+-+|+....+ .++.+...-.-+.+.+...
T Consensus 394 -ss~Ee~~----SK~leleke~KnLs~k~e~Leeri~----ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~ 464 (1195)
T KOG4643|consen 394 -SSYEELI----SKHLELEKEHKNLSKKHEILEERIN----QLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSL 464 (1195)
T ss_pred -hhHHHHH----HHHHHHHHHhHhHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 0122111 112233333333332221 1111 222233344433333 3333333333344444444
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh---hhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHH
Q 000927 688 RERVLNDIAHLKEVAEGEIQEIKSE----RDQLEKEKHEVK---VNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKR 760 (1222)
Q Consensus 688 k~~EL~~In~lke~a~kE~Eev~~E----~~rLekEr~Ei~---~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~ 760 (1222)
..-+++..|++-+-...+.++...- ...|..-..++. ..+..+++|.-.+-...+.++....-|...=-.+-.
T Consensus 465 e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ 544 (1195)
T KOG4643|consen 465 ENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEE 544 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4456666776666555555544333 222222222222 233444455444444444444444444444444567
Q ss_pred HHHHHHHHHHhhcc
Q 000927 761 EKERFLEFVEKHTS 774 (1222)
Q Consensus 761 eRe~fl~~vEklK~ 774 (1222)
++.+++.+|..|+.
T Consensus 545 ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 545 ENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHH
Confidence 88889999998886
No 44
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.16 E-value=1 Score=51.15 Aligned_cols=166 Identities=20% Similarity=0.241 Sum_probs=116.8
Q ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 000927 443 LDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKI 522 (1222)
Q Consensus 443 Le~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lki 522 (1222)
+=+...++.-|..=++=+++-+..--..|...-..|......|.+..+.+..+...+....+.+..+...+...... +
T Consensus 126 ~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--~ 203 (325)
T PF08317_consen 126 LVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--I 203 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h
Confidence 33444555556666666666666655555555555555555555555555555555555555555555555444333 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000927 523 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEE 602 (1222)
Q Consensus 523 teeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~e 602 (1222)
..-+..++. .||++|.....+-..+-++.++|+.++..-...++.+.+++.++..+.......++....|=..|-.
T Consensus 204 ~~~D~~eL~----~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~ 279 (325)
T PF08317_consen 204 ESCDQEELE----ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVK 279 (325)
T ss_pred hhcCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 333444544 4567777777778888888999999999999999999999999999999999888888889999999
Q ss_pred HhHHHHHHHHHH
Q 000927 603 RLKKEECAMRDY 614 (1222)
Q Consensus 603 rLK~Ek~~~r~~ 614 (1222)
+||.+-+.++..
T Consensus 280 ~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 280 RLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHH
Confidence 999998887754
No 45
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.89 E-value=5.6 Score=47.38 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 000927 540 QIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEK 585 (1222)
Q Consensus 540 EIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~ 585 (1222)
++..++...+.|.....++..+....+.+|..+...++++.++...
T Consensus 359 ~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 359 KAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444445555555555555444433
No 46
>PRK12704 phosphodiesterase; Provisional
Probab=95.80 E-value=0.5 Score=57.17 Aligned_cols=123 Identities=20% Similarity=0.284 Sum_probs=58.0
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHh
Q 000927 408 RKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIA 487 (1222)
Q Consensus 408 RKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~ 487 (1222)
+..+++++...+.+++ .++..++..|.+||..|+.+.+.|..++..|+.+-..|..+++.|...++
T Consensus 59 ~leaeeE~~~~R~Ele---~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~----------- 124 (520)
T PRK12704 59 LLEAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQ----------- 124 (520)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 3334455555555544 44555566666666655554444444444444444444333333333333
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 488 DKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSE--LLRLQSQLKQQIETYRHQQELLLK 553 (1222)
Q Consensus 488 dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E--~l~LqseLKeEIe~~R~Qke~Llk 553 (1222)
++..++.+++++......++.+|. -+|.+|=-+ +..+..+++.++..+-.+.+.-.+
T Consensus 125 ---eLe~~~~~~~~~~~~~~~~l~~~a------~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (520)
T PRK12704 125 ---ELEKKEEELEELIEEQLQELERIS------GLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAK 183 (520)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444433333333332 223333333 335677788888775444444433
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.77 E-value=10 Score=49.44 Aligned_cols=52 Identities=29% Similarity=0.489 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000927 339 INSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAIL 393 (1222)
Q Consensus 339 i~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L 393 (1222)
++.-|++|-.-=..+..++..|+.+=.+|.-++..+..-+ -++++++....+
T Consensus 696 le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e---~~~~~~~~~~~~ 747 (1174)
T KOG0933|consen 696 LERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNE---FHKLLDDLKELL 747 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh---HhhHHHHHHHHH
Confidence 3344445545555677778888888777777777765544 455555554443
No 48
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.65 E-value=0.61 Score=56.38 Aligned_cols=62 Identities=23% Similarity=0.380 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHH
Q 000927 411 IEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEE 475 (1222)
Q Consensus 411 ~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeE 475 (1222)
+++++..++.+++ .++..++..+.+||+.|+.+.+.|..++..|+.+-+.|..+++.|...+
T Consensus 56 aeeE~~~~R~Ele---~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re 117 (514)
T TIGR03319 56 AKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKE 117 (514)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554444 3444555555555555554444444444444444444444433333333
No 49
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.60 E-value=4.9 Score=44.66 Aligned_cols=186 Identities=19% Similarity=0.249 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHhhhhccH-HHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHhHH
Q 000927 488 DKESLQILKVEI----DQIESENAQQELQIQEECQKLKINE-EEKS-ELLRLQS---QLKQQIETYRHQQELLLKEHEDL 558 (1222)
Q Consensus 488 dkEel~~lK~el----EK~~a~~e~q~~qi~ee~e~Lkite-eER~-E~l~Lqs---eLKeEIe~~R~Qke~LlkEae~L 558 (1222)
+|++|..|+.-+ ++.+ +++.+-..+......+.... ...+ -...++. .|...|+.+-.++--|.-+.+.|
T Consensus 2 EK~eL~~LNdRla~YIekVr-~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l 80 (312)
T PF00038_consen 2 EKEELQSLNDRLASYIEKVR-FLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNL 80 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence 455555555443 3333 23444444444444444441 1111 1222233 34467777777777777777777
Q ss_pred HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH---HHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHH-HHHHHHH
Q 000927 559 QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK---LQHSAEERLKKEECAMRDYVQREIEAIRLDKE-AFEATMR 634 (1222)
Q Consensus 559 k~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek---~~~~E~erLK~Ek~~~r~~~krelE~L~~ekE-sF~~~M~ 634 (1222)
+.+...|...|+..-..+..++.+...+...-..... .+.+.-..|+.|..-++..|..++..|...-. .+-..|.
T Consensus 81 ~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~ 160 (312)
T PF00038_consen 81 KEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVD 160 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeec
Confidence 7777788888887777777777666655544333322 24466778888889999999999998887653 2222222
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 000927 635 H-EQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKME 674 (1222)
Q Consensus 635 h-E~s~~~ek~q~Erad~l~d~E~qkreLE~~~~~r~EE~E 674 (1222)
. -...+..-+..=|+++=..+..-+.+++...+.+.+++.
T Consensus 161 ~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~ 201 (312)
T PF00038_consen 161 QFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELR 201 (312)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHHHHhhhhhhhhhhccccccccc
Confidence 1 123334444444444444444444444444444444433
No 50
>PRK00106 hypothetical protein; Provisional
Probab=95.60 E-value=2 Score=52.48 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHH
Q 000927 532 RLQSQLKQQIETYR-HQQELLLKEH 555 (1222)
Q Consensus 532 ~LqseLKeEIe~~R-~Qke~LlkEa 555 (1222)
.+..+++.++..+- ....+...++
T Consensus 177 ~~~~~~~~~~~~~i~~~e~~a~~~a 201 (535)
T PRK00106 177 ETENKLTHEIATRIREAEREVKDRS 201 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677766543 3333333444
No 51
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.46 E-value=8.8 Score=47.32 Aligned_cols=303 Identities=17% Similarity=0.219 Sum_probs=158.5
Q ss_pred hhhhhhhhcccccchhhHHHHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHh
Q 000927 185 GEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREA 264 (1222)
Q Consensus 185 r~E~AeiK~~sesKLaEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea 264 (1222)
..+...||+.++.=|+.|..+|+.+......++..+.....-+.++-.+.-.
T Consensus 80 ~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~---------------------------- 131 (546)
T KOG0977|consen 80 GRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEK---------------------------- 131 (546)
T ss_pred cCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------------------------
Confidence 3577889999999999999999988777777766665555444443322211
Q ss_pred HHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHH
Q 000927 265 HEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLA 344 (1222)
Q Consensus 265 ~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rl~ 344 (1222)
.++...--|+++.+|...|-+.+.-++-.++.+..=|+.....-+..-+...+|..+++.++.+...--..+..+..-+.
T Consensus 132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lle 211 (546)
T KOG0977|consen 132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLE 211 (546)
T ss_pred HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 12222334667778877777777777766666665555544444444444555666665555544332222222111111
Q ss_pred HHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHH-HHHHHHH-HHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 000927 345 ELVVKEREADCLRSTVEMKEKRLLTIEEKLNARER-VEIQKLL-DDQRAILDAKQQEFELELEEKRKSIEEEMRSKISAL 422 (1222)
Q Consensus 345 ~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~-~eIQkLl-deh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~ 422 (1222)
.|.- ...+-+.+|.+..-+ ..|+. ...+... ++-..++.-=+-+||.-+..-|+.++.=.+.|+.++
T Consensus 212 el~f----------~~~~h~~eI~e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i 280 (546)
T KOG0977|consen 212 ELAF----------LKRIHKQEIEEERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEI 280 (546)
T ss_pred HHHH----------HHhccHHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1111 111222333332222 12221 1111110 011122333345677777777777777777777766
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000927 423 DQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQI 502 (1222)
Q Consensus 423 e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~ 502 (1222)
...=.-- -..-+..-+.|...-.-+.+--.-|-+-|..-.+.++.|+.-+.+|..++...+..=.+.+..
T Consensus 281 ~~~~~~~----------~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~ 350 (546)
T KOG0977|consen 281 RTSAERA----------NVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAE 350 (546)
T ss_pred Hhhhccc----------cchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence 5311000 001111122222222333333333344455566667777777777777777666555444444
Q ss_pred HhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 503 ESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRH 546 (1222)
Q Consensus 503 ~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~ 546 (1222)
.+.+-+++.++. -|...|+-.+.-|--||..||.
T Consensus 351 i~~mReec~~l~----------~Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 351 IAKMREECQQLS----------VELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred HHHHHHHHHHHH----------HHHHHhhchHhHHHhHHHHHHH
Confidence 444444444433 3555677778888889999985
No 52
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=95.46 E-value=2.2 Score=45.63 Aligned_cols=70 Identities=30% Similarity=0.560 Sum_probs=44.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHH
Q 000927 403 ELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVK 472 (1222)
Q Consensus 403 ElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~ 472 (1222)
++...|..++.++..++.++..+|..|..+|+.|..+...|+++...|..++.+|..+...|+.++..+.
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677788888887787777776666666666666666666555555555555555555555444443
No 53
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.28 E-value=14 Score=48.04 Aligned_cols=296 Identities=21% Similarity=0.316 Sum_probs=150.4
Q ss_pred HhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhh---hhhh
Q 000927 255 RLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDL---SSSK 331 (1222)
Q Consensus 255 rlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~---~~~~ 331 (1222)
-++.--|-+-+...|..-=+.+.++=+.|.+.-+-|..-|.+=++| ++. .++.-.++|.++..+++. .+.+
T Consensus 175 Slkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~r--r~l----EYtiYdrEl~E~~~~l~~le~~r~~ 248 (1200)
T KOG0964|consen 175 SLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKER--RSL----EYTIYDRELNEINGELERLEEDRSS 248 (1200)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH--hhh----hhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 3344445555555555555555555555555555555555544333 222 344455555555554432 2222
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 000927 332 LKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIE---EKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKR 408 (1222)
Q Consensus 332 Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~le---EKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kR 408 (1222)
.-++-+++... |...+.+...+...+-..|..|..|- +.+.+|+..-+++. +.|..+..+|--+++--+
T Consensus 249 ~~e~s~~~~~~---~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~k-----t~lel~~kdlq~~i~~n~ 320 (1200)
T KOG0964|consen 249 APEESEQYIDA---LDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKK-----TKLELKIKDLQDQITGNE 320 (1200)
T ss_pred cchhhhhHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhhhHHHHHHhhhhh
Confidence 22332222222 22223333333333333333333322 34555555555554 555555555554444221
Q ss_pred ---hhHHHHHHHHHHHHhhhhhhhhhhH---HHHHHHHHHHHHhhhHHHHHHHHHHHH------HhhHHHHHHhHHHHHH
Q 000927 409 ---KSIEEEMRSKISALDQQEFEISHRE---EKLERREQALDKKSDRVKEKENDLAAR------LKSVKEREKFVKAEEK 476 (1222)
Q Consensus 409 ---Ks~eeel~~K~~~~e~rEvel~h~E---ekl~krEqaLe~k~~~lkeKEkdl~~K------~k~LKEkEksL~aeEK 476 (1222)
++.-..++.=....+.++.+++..+ ..+...|.-+.+.+..+..+..||-+| +++-+++++-|+.+
T Consensus 321 q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~e-- 398 (1200)
T KOG0964|consen 321 QQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSE-- 398 (1200)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHH--
Confidence 1111111111112222222222222 122333444444444444444444433 34445666666544
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000927 477 KLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHE 556 (1222)
Q Consensus 477 ~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae 556 (1222)
|+.-+.-+..-++..+.++-|++-+...+++...+|.+-...+.-++..-.++...-..||++.|.+-.....|--|.-
T Consensus 399 -i~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~ 477 (1200)
T KOG0964|consen 399 -IEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEK 477 (1200)
T ss_pred -HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777788888888888888777777777777666666666667777777788888888876666666666666
Q ss_pred HHHHHHHHHHH
Q 000927 557 DLQQDREKFEK 567 (1222)
Q Consensus 557 ~Lk~ekekFE~ 567 (1222)
.|+...++.+.
T Consensus 478 ~l~~~i~~~~~ 488 (1200)
T KOG0964|consen 478 KLRSLIANLEE 488 (1200)
T ss_pred HHHHHHHHHHH
Confidence 66665555544
No 54
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.03 E-value=11 Score=45.13 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=74.0
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHH
Q 000927 499 IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDE 578 (1222)
Q Consensus 499 lEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~e 578 (1222)
|......++.++..+......++....+..++...-.+|...|..+|.....+..+...|+.+.++.+..=..+.++-.+
T Consensus 304 l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~ 383 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAK 383 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH
Confidence 33455566666666666666666666677777777788888888888888888888888888888888887777777888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000927 579 INKEQEKIADEKKKLEKLQ 597 (1222)
Q Consensus 579 l~kE~~~I~eEre~lek~~ 597 (1222)
+..++..+..++..+.+-.
T Consensus 384 l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 384 LQDELDKIVKTKSELVKEK 402 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888877776664433
No 55
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.95 E-value=20 Score=47.78 Aligned_cols=71 Identities=20% Similarity=0.144 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHhhh
Q 000927 450 VKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQI--LKVEIDQIESENAQQELQIQEECQKL 520 (1222)
Q Consensus 450 lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~--lK~elEK~~a~~e~q~~qi~ee~e~L 520 (1222)
+.+.=.++......|.+..+.+....++++..+...+.--.+..+ ++..++.-+..+.++..|..-|...+
T Consensus 621 ~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 621 ISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555444444433333333 55555555555555555554444443
No 56
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.83 E-value=20 Score=47.21 Aligned_cols=214 Identities=21% Similarity=0.231 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH----
Q 000927 539 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY---- 614 (1222)
Q Consensus 539 eEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~---- 614 (1222)
.+++.++.+++-|+.+..+|.. +.+ |-....-|..-|+..+.+..-+-+.+.+-+ +.+.+|...+.+.
T Consensus 652 k~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l----~~~~~El~~~~~~i~~~ 723 (1141)
T KOG0018|consen 652 KEVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSL----EQNELELQRTESEIDEF 723 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 4555566666666666665555 333 444555555555555555554444444222 3334444444443
Q ss_pred ------HHHHHHHhhhcHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000927 615 ------VQREIEAIRLDKEAFEATMRHEQLVLSE----------------KAKNDRRKMLEEFEMQRMNQEAELLNRRDK 672 (1222)
Q Consensus 615 ------~krelE~L~~ekEsF~~~M~hE~s~~~e----------------k~q~Erad~l~d~E~qkreLE~~~~~r~EE 672 (1222)
+++.++...-...+....|..=-+.+|. ..+++.++=++.|+-|+--|++.|+=-+..
T Consensus 724 ~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~ 803 (1141)
T KOG0018|consen 724 GPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQK 803 (1141)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecc
Confidence 3455555555555555555421111111 127888888899999999999888644331
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhh
Q 000927 673 MEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLY 752 (1222)
Q Consensus 673 ~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk 752 (1222)
--..--+|...+=+.-+.+++.+.--.+.+.+++-++ .+|.. ++ ..-=++.+.+|.+.++...-|+..-.||.
T Consensus 804 d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~--k~----k~~~~~~~~e~~e~~k~~~~~~~~~tkl~ 876 (1141)
T KOG0018|consen 804 DTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK--KN----KSKFEKKEDEINEVKKILRRLVKELTKLD 876 (1141)
T ss_pred cHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111223444555555666666666666666666666 44443 22 22223455566666666666666555555
Q ss_pred Hh-------HHHHHHHHHHHHH
Q 000927 753 GD-------REQFKREKERFLE 767 (1222)
Q Consensus 753 ~q-------RE~~~~eRe~fl~ 767 (1222)
.+ ++.+..||-.+|.
T Consensus 877 ~~i~~~es~ie~~~~er~~lL~ 898 (1141)
T KOG0018|consen 877 KEITSIESKIERKESERHNLLS 898 (1141)
T ss_pred hhhhhhhhHHHHHHHHHHHHHH
Confidence 54 5555555555554
No 57
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.79 E-value=16 Score=46.08 Aligned_cols=309 Identities=21% Similarity=0.276 Sum_probs=175.6
Q ss_pred hHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhH-
Q 000927 258 LVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKERE- 336 (1222)
Q Consensus 258 f~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~ke- 336 (1222)
+..|+-.+|++++.----+.+-+-+++...--|-+.|..+||=++..+.-.-.|+....+-+.+...++.++..|....
T Consensus 231 y~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~ 310 (786)
T PF05483_consen 231 YKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESES 310 (786)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888777777777888888888888889999999999988888888888888888888887777775533
Q ss_pred ------HHHHHHHHHHH--HHHH--HHHHHhhhHHhhHHhHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHhhhHHHHH
Q 000927 337 ------DEINSRLAELV--VKER--EADCLRSTVEMKEKRLLTIEEKLNARE---RVEIQKLLDDQRAILDAKQQEFELE 403 (1222)
Q Consensus 337 ------ddi~~rl~~L~--~kEk--e~~~~~~~Le~KEkeLl~leEKL~aRE---~~eIQkLldeh~a~L~~Kk~eFElE 403 (1222)
.++..-...+. ..|+ .+...........-.+..|+-+++.=. +.++|.+ -.++....-+=+|
T Consensus 311 tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~-----~~~ed~lk~l~~e 385 (786)
T PF05483_consen 311 TQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRL-----KKNEDQLKILTME 385 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHH
Confidence 33332222221 1222 122222222233334445555554433 3555555 2233444445566
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHH
Q 000927 404 LEEKRKSIEEEMRSKISALDQQEFEISHREEKLERRE------QALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKK 477 (1222)
Q Consensus 404 lE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krE------qaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~ 477 (1222)
|..+-..+++..+.+.. +|+++...-.-|++.. .-+++-.+.|+..+.+|... |.-+++.+.-.+-.
T Consensus 386 Lqkks~eleEmtk~k~~----ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~l---lq~~ekev~dLe~~ 458 (786)
T PF05483_consen 386 LQKKSSELEEMTKQKNN----KEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGL---LQIREKEVHDLEIQ 458 (786)
T ss_pred HHHhhHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHH
Confidence 77666667766655532 3333333333333333 33555555666666666544 33344444444444
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 478 LELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKI-------NEEEKSELLRLQSQLKQQIETYRHQQEL 550 (1222)
Q Consensus 478 lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lki-------teeER~E~l~LqseLKeEIe~~R~Qke~ 550 (1222)
|. ...+.=+.+-..++.++..++++..+-.+-..+..- +.-+++...-=-.++.+-|...+.|.+-
T Consensus 459 l~-------~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~ 531 (786)
T PF05483_consen 459 LT-------TIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEK 531 (786)
T ss_pred HH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 44 444443444444444444444433322222111111 1112222222223567788899999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 000927 551 LLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEK 585 (1222)
Q Consensus 551 LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~ 585 (1222)
++++++.|......+-.|.+.+-+.-+...-|.++
T Consensus 532 ~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~ 566 (786)
T PF05483_consen 532 MLKQIENLEETNTQLRNELESVKEELKQKGEEVKC 566 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888877877776655555555554
No 58
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.62 E-value=7.8 Score=41.94 Aligned_cols=144 Identities=17% Similarity=0.330 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Q 000927 527 KSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKK 606 (1222)
Q Consensus 527 R~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~ 606 (1222)
+..-+-|-.-||++|...|.+....-+...++.++-.+.-.--..+.+.+++|++.+......+..|....
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k--------- 92 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLK--------- 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 45667788899999999999999999999999999999999999999999999998887775555444332
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000927 607 EECAMRDYVQREIEAIRLDKEAFE---ATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRT 683 (1222)
Q Consensus 607 Ek~~~r~~~krelE~L~~ekEsF~---~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLE~~~~~r~EE~E~~L~EREk~ 683 (1222)
..+. ....++..|..+.+.+. .+++.||.+|..+-.. +++|+.-.---=.+-++++...+...|.-|+..
T Consensus 93 --~rl~-~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaq 165 (201)
T PF13851_consen 93 --ARLK-ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQ 165 (201)
T ss_pred --HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 23556666666666554 3445555555555442 333332222222334556666666666666665
Q ss_pred HHH
Q 000927 684 FEE 686 (1222)
Q Consensus 684 FEe 686 (1222)
+.+
T Consensus 166 L~e 168 (201)
T PF13851_consen 166 LNE 168 (201)
T ss_pred HHH
Confidence 543
No 59
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.38 E-value=1.9 Score=47.63 Aligned_cols=108 Identities=18% Similarity=0.290 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHh
Q 000927 675 KELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGD 754 (1222)
Q Consensus 675 ~~L~EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~q 754 (1222)
..|+.+...|+.-+..-++.+.+++..- +=+++..-|+..|..|| ...-+++-.|+.||..|.+.=+.++..
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er-------~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQER-------MAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899998888888888877654 44555555555555554 455677888999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhhHHhhhcCCCCCcc
Q 000927 755 REQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDE 796 (1222)
Q Consensus 755 RE~~~~eRe~fl~~vEklK~ckncge~~~efvlsdLql~d~e 796 (1222)
|......=.+++..+-.|| .-++++..+-|.|....
T Consensus 76 r~~~~~~i~r~~eey~~Lk------~~in~~R~e~lgl~~Lp 111 (230)
T PF10146_consen 76 RNKRQEKIQRLYEEYKPLK------DEINELRKEYLGLEPLP 111 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHcCCCCCC
Confidence 8775544444444333333 55555533325544333
No 60
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.35 E-value=30 Score=47.34 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 000927 380 VEIQKLLDDQRAILDAKQQEFELELEEKRK 409 (1222)
Q Consensus 380 ~eIQkLldeh~a~L~~Kk~eFElElE~kRK 409 (1222)
..-++.++.+-..|..+..++|--+++.+.
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~ 534 (1486)
T PRK04863 505 LREQRHLAEQLQQLRMRLSELEQRLRQQQR 534 (1486)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888888887776653
No 61
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.51 E-value=24 Score=43.17 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHH
Q 000927 470 FVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEE 525 (1222)
Q Consensus 470 sL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lkitee 525 (1222)
.|....++|+.-+..|.+=++++..|...++.++.+++..+..+..-+++......
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~ 337 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASS 337 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777788888888888888888888888888888888777777776666554443
No 62
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.43 E-value=0.59 Score=58.09 Aligned_cols=21 Identities=14% Similarity=0.471 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000927 667 LNRRDKMEKELQERTRTFEEK 687 (1222)
Q Consensus 667 ~~r~EE~E~~L~EREk~FEee 687 (1222)
.+|..-+--.+..+-..|-+-
T Consensus 619 ekr~~RLkevf~~ks~eFr~a 639 (722)
T PF05557_consen 619 EKRNQRLKEVFKAKSQEFREA 639 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555667777777654
No 63
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.94 E-value=31 Score=42.92 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHH
Q 000927 705 EIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCR 749 (1222)
Q Consensus 705 E~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~ 749 (1222)
.+.++..++..++++..++..+...+.++...++++|+.|...-.
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555444333
No 64
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=92.62 E-value=21 Score=43.57 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhccccchhhhhhHHhhhcCCCCCccccCCCCChHHHhhh
Q 000927 762 KERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERC 810 (1222)
Q Consensus 762 Re~fl~~vEklK~ckncge~~~efvlsdLql~d~e~~~~~~~~~l~d~~ 810 (1222)
+.-|...+..|+.|.....++.- +|+-|. +.....-+++...|.++|
T Consensus 429 ~~p~~~el~~l~~~~~~d~~v~~-~l~~l~-~~a~~~Gv~s~~~L~~rf 475 (582)
T PF09731_consen 429 PRPFEDELRALKELAPDDELVDA-ALSSLP-PEAAQRGVPSEAQLRNRF 475 (582)
T ss_pred CCCHHHHHHHHHHhCCCChHHHH-HHHhcC-HHHhhCCCCCHHHHHHHH
Confidence 46788888899988776666663 466666 444444577777888877
No 65
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.41 E-value=52 Score=44.16 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=21.5
Q ss_pred HHHhhhhhcHHHHHHHHHHhhHhHHHHHHH
Q 000927 732 EQQLGMRKDIDELDILCRRLYGDREQFKRE 761 (1222)
Q Consensus 732 ~q~~em~kdIeeL~~ls~KLk~qRE~~~~e 761 (1222)
.--.|++| +-+|..++.+|.+.|.....+
T Consensus 1015 kkE~EkrK-v~~L~qlr~~l~k~~l~~q~~ 1043 (1317)
T KOG0612|consen 1015 KKEKEKRK-VMELSQLRTKLNKLRLKNQKE 1043 (1317)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhhhHHH
Confidence 33457788 889999999998887665544
No 66
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.18 E-value=38 Score=42.10 Aligned_cols=310 Identities=20% Similarity=0.299 Sum_probs=140.5
Q ss_pred HhhHHHHHHHHH--HHHHHHHHHHh---------------hhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 000927 374 LNARERVEIQKL--LDDQRAILDAK---------------QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKL 436 (1222)
Q Consensus 374 L~aRE~~eIQkL--ldeh~a~L~~K---------------k~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl 436 (1222)
|+.|=-+-|.|+ |..|+..|..- +-=||+|+-.-|+.+++-- .+....|-.+
T Consensus 47 LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~-----------~~ra~~e~ei 115 (546)
T KOG0977|consen 47 LNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETA-----------RERAKLEIEI 115 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 444444444443 45555555544 3346666666666555433 3333333344
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000927 437 ERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEE 516 (1222)
Q Consensus 437 ~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee 516 (1222)
.+-...++.-..++.++++.+..==..++.+...|...+-++..-+...-.=-+++.-||.+...+...|..=+.+++.|
T Consensus 116 ~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 116 TKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44444444444445555555544444455555555555544444444444444555666667777776666666666644
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--hhhHHhHHHHHHHHHHHHHHHHHHH
Q 000927 517 CQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEW--EVLDEKRDEINKEQEKIADEKKKLE 594 (1222)
Q Consensus 517 ~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EW--E~LDEKR~el~kE~~~I~eEre~le 594 (1222)
.- -|.++.---..|.++|+-+..+=.. ++++++.+|..+- +.=++=+.+|..=+.+|-.+=++
T Consensus 196 tl-------lr~d~~n~~q~Lleel~f~~~~h~~------eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~-- 260 (546)
T KOG0977|consen 196 TL-------LRVDLQNRVQTLLEELAFLKRIHKQ------EIEEERRKARRDTTADNREYFKNELALAIREIRAQYEA-- 260 (546)
T ss_pred HH-------HHHHHHhHHHHHHHHHHHHHhccHH------HHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH--
Confidence 31 1233333333455666555433221 2233344444443 22223333333333333322222
Q ss_pred HHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000927 595 KLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR--HE-QLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRD 671 (1222)
Q Consensus 595 k~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~--hE-~s~~~ek~q~Erad~l~d~E~qkreLE~~~~~r~E 671 (1222)
..+.=+.+++.-|++.+..++..=+.+-..-. +| ...+-..|-.=|++ |.|+|..- ..+.++.+
T Consensus 261 --------~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~k-lselE~~n----~~L~~~I~ 327 (546)
T KOG0977|consen 261 --------ISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAK-LSELESRN----SALEKRIE 327 (546)
T ss_pred --------HHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhh-hccccccC----hhHHHHHH
Confidence 22223334444444444444421111111111 00 01111111111111 11444333 24556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 000927 672 KMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQ 733 (1222)
Q Consensus 672 E~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q 733 (1222)
.++..|.+=-+.|+..-..- ..+|..|.-|+..|-.|.+.+--.+.-|+-+
T Consensus 328 dL~~ql~e~~r~~e~~L~~k-----------d~~i~~mReec~~l~~Elq~LlD~ki~Ld~E 378 (546)
T KOG0977|consen 328 DLEYQLDEDQRSFEQALNDK-----------DAEIAKMREECQQLSVELQKLLDTKISLDAE 378 (546)
T ss_pred HHHhhhhhhhhhhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHHhhchHhHHHhH
Confidence 88888888888888653322 2344445555555555555554455444443
No 67
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.14 E-value=1.7 Score=54.28 Aligned_cols=42 Identities=26% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHH
Q 000927 330 SKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIE 371 (1222)
Q Consensus 330 ~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~le 371 (1222)
..|++....+..||..+-.-+.++..++.....-|.++..+.
T Consensus 284 elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~ 325 (722)
T PF05557_consen 284 ELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWE 325 (722)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667766666555665555555555555555554
No 68
>PRK12705 hypothetical protein; Provisional
Probab=91.93 E-value=10 Score=46.43 Aligned_cols=59 Identities=29% Similarity=0.463 Sum_probs=31.9
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHh
Q 000927 405 EEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKF 470 (1222)
Q Consensus 405 E~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEks 470 (1222)
...|..++.+++.++.++..+ |..+.+||+.|+.+.+.|..++..|..+.+.|..+++.
T Consensus 62 ~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~ 120 (508)
T PRK12705 62 LRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELE 120 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555554 44566666666666666666555555555444444443
No 69
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=91.92 E-value=29 Score=40.18 Aligned_cols=53 Identities=21% Similarity=0.471 Sum_probs=33.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHH
Q 000927 441 QALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQ 493 (1222)
Q Consensus 441 qaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~ 493 (1222)
..|..++..+.++-.+|-.|.+.+.++=+++++....|-.+-++|-..+.+++
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein 82 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEIN 82 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666555554
No 70
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.37 E-value=32 Score=39.63 Aligned_cols=66 Identities=30% Similarity=0.500 Sum_probs=53.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhHhHHHHHHhhhhhcHHHHHHHHHHhhHhH
Q 000927 690 RVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVK--------------VNREKLQEQQLGMRKDIDELDILCRRLYGDR 755 (1222)
Q Consensus 690 ~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~--------------~~ke~le~q~~em~kdIeeL~~ls~KLk~qR 755 (1222)
.-|++=|.+=.....||+.|.--+.+|++|..... ..+..++.+..-+.+-|+.|..|++-|+.+|
T Consensus 230 ~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~er 309 (309)
T PF09728_consen 230 DTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAER 309 (309)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 45777888889999999999999999999987543 4666777777777788888888888887765
No 71
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=90.76 E-value=78 Score=42.95 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=59.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Q 000927 651 MLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKL 730 (1222)
Q Consensus 651 ~l~d~E~qkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~l 730 (1222)
-+++--.++++|+..++.+ +|..+.+..+.+.......|+... ...++.++..|..+++-++..+..+
T Consensus 993 ~l~~~~~~er~l~dnl~~~------~l~~q~~e~~re~~~ld~Qi~~~~------~~~~~ee~~~L~~~~~~l~se~~~~ 1060 (1294)
T KOG0962|consen 993 KIRNQYQRERNLKDNLTLR------NLERKLKELERELSELDKQILEAD------IKSVKEERVKLEEEREKLSSEKNLL 1060 (1294)
T ss_pred HHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHhhhHhhHH
Confidence 3555566667777666654 334444445555555555555443 5567888999999999999999999
Q ss_pred HHHHhhhhhcHHHHHHH
Q 000927 731 QEQQLGMRKDIDELDIL 747 (1222)
Q Consensus 731 e~q~~em~kdIeeL~~l 747 (1222)
-++..++..-|.-+...
T Consensus 1061 lg~~ke~e~~i~~~k~e 1077 (1294)
T KOG0962|consen 1061 LGEMKQYESQIKKLKQE 1077 (1294)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888876543
No 72
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.73 E-value=59 Score=41.53 Aligned_cols=54 Identities=26% Similarity=0.401 Sum_probs=29.8
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHhhHH
Q 000927 404 LEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRV-KEKENDLAARLKSVK 465 (1222)
Q Consensus 404 lE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~l-keKEkdl~~K~k~LK 465 (1222)
+.++|+-+|.|++.-++++-.+|-.+..+|..+ | .++.. +|-++|.+.-+.+|-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~----~----~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL----Q----ELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHHHHhhhhhhHHHHHHHHH
Confidence 444555555555555577767766666666665 2 22332 455556665555554
No 73
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=89.89 E-value=26 Score=37.70 Aligned_cols=79 Identities=32% Similarity=0.457 Sum_probs=45.4
Q ss_pred hHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhH
Q 000927 239 MKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDL 318 (1222)
Q Consensus 239 RkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeL 318 (1222)
++-..+++++-.++.. ..+|.++...|..|..+++.|.+.++.|-.-...|+.|+..+......|.+....|
T Consensus 51 ~ke~~~eakee~~~~r--------~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l 122 (201)
T PF12072_consen 51 KKEAELEAKEEAQKLR--------QELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEEL 122 (201)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555655444432 24566677777777777777777666666666666666665555444444444444
Q ss_pred HHHHhhh
Q 000927 319 EELEKKI 325 (1222)
Q Consensus 319 Ee~~kki 325 (1222)
+.....+
T Consensus 123 ~~~~~e~ 129 (201)
T PF12072_consen 123 EEREEEL 129 (201)
T ss_pred HHHHHHH
Confidence 4444333
No 74
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.47 E-value=47 Score=38.50 Aligned_cols=166 Identities=19% Similarity=0.233 Sum_probs=106.5
Q ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 000927 443 LDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKI 522 (1222)
Q Consensus 443 Le~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lki 522 (1222)
|-+...++..|.-=++=|++-|+.-...|...-.-|......|.++-+-+..+...+....+.+..+..++.+....+..
T Consensus 121 lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~ 200 (312)
T smart00787 121 LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 44455566666666666666665555555444444444444444444444444444444444444444443333332221
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000927 523 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEE 602 (1222)
Q Consensus 523 teeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~e 602 (1222)
- +-.++..|..+|++ .=.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-.
T Consensus 201 ~--d~~eL~~lk~~l~~----~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~ 274 (312)
T smart00787 201 C--DPTELDRAKEKLKK----LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIE 274 (312)
T ss_pred C--CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1 14566655555544 34455556677888899999999999999999999999988888888888888889999
Q ss_pred HhHHHHHHHHHH
Q 000927 603 RLKKEECAMRDY 614 (1222)
Q Consensus 603 rLK~Ek~~~r~~ 614 (1222)
+||..-..++..
T Consensus 275 ~Lk~~~~~Le~l 286 (312)
T smart00787 275 KLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHH
Confidence 999888887754
No 75
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.86 E-value=54 Score=38.34 Aligned_cols=159 Identities=18% Similarity=0.286 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 000927 537 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ 616 (1222)
Q Consensus 537 LKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~k 616 (1222)
||-|++.+|..-.-|..|...|++.=-++-.-=| .+=|-|...+..=-+.|+++|..+--.|.
T Consensus 39 Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aE-----------------qEEE~isN~LlKkl~~l~keKe~L~~~~e 101 (310)
T PF09755_consen 39 LKRELETEKARCKHLQEENRALREASVRIQAKAE-----------------QEEEFISNTLLKKLQQLKKEKETLALKYE 101 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655544332211111 11112222222224456666666655555
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q 000927 617 REIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQER---TRTFEEKRERVLN 693 (1222)
Q Consensus 617 relE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLE~~~~~r~EE~E~~L~ER---Ek~FEeek~~EL~ 693 (1222)
++-|.|.-.=-.=.+.+.+|+..+-..+..|...++.-+.-+=..|+.++...+.++++-.+++ |.+.|.+-+
T Consensus 102 ~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE---- 177 (310)
T PF09755_consen 102 QEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQE---- 177 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH----
Confidence 5444443222223344445555555555555544444444444455555555555555433333 222222222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 694 DIAHLKEVAEGEIQEIKSERDQLEKE 719 (1222)
Q Consensus 694 ~In~lke~a~kE~Eev~~E~~rLekE 719 (1222)
+|...+-+-|.++..|...|+..
T Consensus 178 ---~lvN~L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 178 ---ALVNRLWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334455555555555555543
No 76
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=86.74 E-value=88 Score=38.45 Aligned_cols=303 Identities=22% Similarity=0.252 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHH
Q 000927 449 RVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKS 528 (1222)
Q Consensus 449 ~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~ 528 (1222)
++++.+.......... |-..|.....+...--..|..=+++|.+++.++......-..=..++....-.+++...--.
T Consensus 98 r~~e~e~~~~~~~~~~--~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve 175 (522)
T PF05701_consen 98 RAKELEQGIAEEASVA--WKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVE 175 (522)
T ss_pred HHHHHhhhhcccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554443322 44445555555555566667777777777777776666655556666666665555444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 000927 529 ELLRLQSQLKQQIETYRHQQELLLKEHEDL----QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERL 604 (1222)
Q Consensus 529 E~l~LqseLKeEIe~~R~Qke~LlkEae~L----k~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erL 604 (1222)
++..==..||+.|+..+.-...-.++.-.+ .+.+..|+.+-+.-.++-..|.+++..+..=.-+|.... .+-..|
T Consensus 176 ~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~-~~l~~L 254 (522)
T PF05701_consen 176 ELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEAS-AELESL 254 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 333333458888888765433333332222 244455555555555555555555533333333333322 333344
Q ss_pred HHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH------HHHHHHHHHHHHHHH
Q 000927 605 KKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQE------AELLNRRDKMEKELQ 678 (1222)
Q Consensus 605 K~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLE------~~~~~r~EE~E~~L~ 678 (1222)
+.|...... ..++... +.-.-...++..-..+..+++--+.+|+ +.|..-.+-+...|
T Consensus 255 q~El~~~~~---~~l~~~~------------~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~EL- 318 (522)
T PF05701_consen 255 QAELEAAKE---SKLEEEA------------EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSEL- 318 (522)
T ss_pred HHHHHHHHH---HHHhhhH------------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 433222222 2222111 0111111122222222222222222221 11222222222222
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHH
Q 000927 679 ERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQF 758 (1222)
Q Consensus 679 EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~ 758 (1222)
++.+. ++..+..--..+...+..+..++.++..+-.-+...-.+......+|...+..|..-....+.-.+..
T Consensus 319 e~~K~-------el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~ 391 (522)
T PF05701_consen 319 EKEKE-------ELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEA 391 (522)
T ss_pred HHHHH-------HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11111111122333444444444444444444444445555667777777777777777777777777
Q ss_pred HHHHHHHHHHHHhhccccc
Q 000927 759 KREKERFLEFVEKHTSCKN 777 (1222)
Q Consensus 759 ~~eRe~fl~~vEklK~ckn 777 (1222)
..+-.+.-..+++.+.+=.
T Consensus 392 ~~E~~~~k~E~e~~ka~i~ 410 (522)
T PF05701_consen 392 KEEVEKAKEEAEQTKAAIK 410 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777778888887775433
No 77
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.74 E-value=98 Score=38.99 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=43.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Q 000927 483 QKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQ 536 (1222)
Q Consensus 483 ~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~Lqse 536 (1222)
..++.=...|.+-|.||.||+..+-.-..+|..-..+|.-|-.-..|++-=-++
T Consensus 491 ~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAK 544 (594)
T PF05667_consen 491 RRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAK 544 (594)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 344455567788888999999999998999999999999888888888755555
No 78
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.20 E-value=71 Score=36.82 Aligned_cols=43 Identities=26% Similarity=0.345 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHH
Q 000927 487 ADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSE 529 (1222)
Q Consensus 487 ~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E 529 (1222)
-|+++|..++.+|......++..+..+.+-+..|......-.+
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~ 248 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEE 248 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777666666666666655554444433333333
No 79
>PRK09039 hypothetical protein; Validated
Probab=86.07 E-value=76 Score=37.09 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=12.0
Q ss_pred hHHhhHHhHHHHHHHHhh
Q 000927 359 TVEMKEKRLLTIEEKLNA 376 (1222)
Q Consensus 359 ~Le~KEkeLl~leEKL~a 376 (1222)
.+..++++|..|+..|+.
T Consensus 47 ~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 47 EISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 456667777777777665
No 80
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=85.94 E-value=1.4e+02 Score=39.82 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=29.5
Q ss_pred HHHHHhHHHHHHhhhhhHHHHH---------HHHHHHHHHhhhhhhhhcccccchhhHHH
Q 000927 154 SEAEKREDNLRRALSMEKQCVA---------DLEKALRDMGEERAQTKLFSEKTLTDANT 204 (1222)
Q Consensus 154 sEaeKREEnLkKALgvEKqCVa---------dLEKAL~emr~E~AeiK~~sesKLaEA~a 204 (1222)
+....|.+-|.+.+|++.-.-. .....+..++..+..+-..++..++....
T Consensus 164 a~~~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~~~~~ls~e~~~~l~~ 223 (1047)
T PRK10246 164 AKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTA 223 (1047)
T ss_pred CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHH
Confidence 3557788999999999985421 12334445555555554444444444433
No 81
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=85.82 E-value=77 Score=36.89 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000927 663 EAELLNRRDKMEKELQERTRTFE 685 (1222)
Q Consensus 663 E~~~~~r~EE~E~~L~EREk~FE 685 (1222)
|..+-.+..++++.|..+.++.+
T Consensus 133 E~~lvq~I~~L~k~le~~~k~~e 155 (294)
T COG1340 133 ERELVQKIKELRKELEDAKKALE 155 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666655543
No 82
>PRK12705 hypothetical protein; Provisional
Probab=85.50 E-value=98 Score=38.37 Aligned_cols=60 Identities=23% Similarity=0.368 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000927 397 QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAAR 460 (1222)
Q Consensus 397 k~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K 460 (1222)
+.++|-|+...|..+... ..-+.+||-.+..+.+.|.+++..|+.+...|..+++.|..+
T Consensus 65 ~~~~e~e~~~~~~~~~~~----e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 65 RNQQRQEARREREELQRE----EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666655444332 222445555555555555555555555444444444444444
No 83
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=85.22 E-value=43 Score=41.15 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 000927 452 EKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK 521 (1222)
Q Consensus 452 eKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk 521 (1222)
++++.++.+-.-+..+|..-....+..+..+.++....+.+...+..+++-...+..+...+.++++..+
T Consensus 189 ~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak 258 (489)
T PF05262_consen 189 DKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAK 258 (489)
T ss_pred ccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444555555555555555555666666666666666666666666666666666555555555554433
No 84
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=85.06 E-value=29 Score=34.00 Aligned_cols=92 Identities=25% Similarity=0.371 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHH
Q 000927 411 IEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKE 490 (1222)
Q Consensus 411 ~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkE 490 (1222)
+...|..|+.+...++..+..++..|.++++.|....-.+..-=++-+. ...-..+..+.+......--.
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~----------k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEA----------KRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778888888888888888888888887776666544333333 333333444444444444455
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 000927 491 SLQILKVEIDQIESENAQQELQ 512 (1222)
Q Consensus 491 el~~lK~elEK~~a~~e~q~~q 512 (1222)
+|..|..+|..+.+.+..-...
T Consensus 82 ei~~l~~~l~~l~~~~~k~e~~ 103 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKLEEK 103 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666555444333
No 85
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.92 E-value=1.2e+02 Score=38.21 Aligned_cols=9 Identities=22% Similarity=0.062 Sum_probs=5.3
Q ss_pred chhhHHHHh
Q 000927 198 TLTDANTLL 206 (1222)
Q Consensus 198 KLaEA~aLv 206 (1222)
=|+--||||
T Consensus 160 iL~mlhWlv 168 (581)
T KOG0995|consen 160 ILGMLHWLV 168 (581)
T ss_pred HHHHHHHHH
Confidence 355556666
No 86
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=84.88 E-value=75 Score=35.95 Aligned_cols=72 Identities=25% Similarity=0.409 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000927 381 EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDL 457 (1222)
Q Consensus 381 eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl 457 (1222)
.|| -||-+..-|..+..++.-.|...+ .++.....+++-.+.++...+.++..-+..+..-.++++.-+..+
T Consensus 11 ~iq-~lD~e~~rl~~~~~~~~~~l~k~~----~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 11 AIQ-KLDLEKDRLEPRIKEIRKALKKAK----AELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHH-HHHHHHHHHHHhhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 334444444444444444443322 455555566666777777777777776666655555554444444
No 87
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.64 E-value=1.7e+02 Score=39.77 Aligned_cols=130 Identities=17% Similarity=0.214 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhhHHhhHHhHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Q 000927 346 LVVKEREADCLRSTVEMKEKRLLTIEEKL--NARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALD 423 (1222)
Q Consensus 346 L~~kEke~~~~~~~Le~KEkeLl~leEKL--~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e 423 (1222)
...-|+.+.+.-..|...|.-+..|.-|. ++++-..|+++.+--...--.-++.|+ .|...-+.++.=|+.|....
T Consensus 1607 t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~lq~~~~~~~~l~~~r~~g~- 1684 (1758)
T KOG0994|consen 1607 TAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-ILQKYYELVDRLLEKRMEGS- 1684 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcc-
Confidence 34445555555666666666666665554 356667777776654433333344444 44444433333333332211
Q ss_pred hhhhhhhhhHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 000927 424 QQEFEISHREEKLERR----EQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLEL 480 (1222)
Q Consensus 424 ~rEvel~h~Eekl~kr----EqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ 480 (1222)
+.-..+=++|..+ -.+-+.++..|+++|-.+..+..+|.-+...|--.+|+++.
T Consensus 1685 ---~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1685 ---QAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence 1111111111111 12234455555555555555555555554444444444443
No 88
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=84.56 E-value=1.3e+02 Score=38.59 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHH
Q 000927 703 EGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFK 759 (1222)
Q Consensus 703 ~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~~ 759 (1222)
..|+-|++.|.-+|+++|--++..-=+|-.+...|+.-.++.-.+..-|.+-|..|.
T Consensus 865 eGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~ 921 (961)
T KOG4673|consen 865 EGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYA 921 (961)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 356677777777777777777776666777777777766666666666666555543
No 89
>PRK09039 hypothetical protein; Validated
Probab=84.48 E-value=27 Score=40.65 Aligned_cols=113 Identities=17% Similarity=0.232 Sum_probs=74.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhhhhhhhhcccccchhhHHHHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHH
Q 000927 163 LRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQ 242 (1222)
Q Consensus 163 LkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKLaEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~ 242 (1222)
|=-.|+++..+-++|+-.|.+|+..+. ++...-+.+....++...-..+++..+....+.|++..-.++++.+...
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~----~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~ 140 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLS----AAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVE 140 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 777899999999999999999999887 2233333333333322222346666666666777777666777777777
Q ss_pred HhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHH
Q 000927 243 ELESRESVIKRERLSLVTEREAHEAAFYKQREDLREW 279 (1222)
Q Consensus 243 evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~ew 279 (1222)
-+.+.=..||+++-++.++..+.|.....++..|.+-
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766666666654444333333
No 90
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.81 E-value=91 Score=35.32 Aligned_cols=89 Identities=25% Similarity=0.331 Sum_probs=53.0
Q ss_pred HHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHH
Q 000927 553 KEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEAT 632 (1222)
Q Consensus 553 kEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~ 632 (1222)
-|.+-++......+.|-..|++.++.|++++....+.-.++++-+...+.++..+-..++. +...+..+++....+
T Consensus 96 ~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e----~~~~~~~~~~~L~~~ 171 (239)
T COG1579 96 IEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE----EGQELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 3334444444444444445555555666666665555555666565666666666555543 455677788888888
Q ss_pred HHHHHHHHHHHHH
Q 000927 633 MRHEQLVLSEKAK 645 (1222)
Q Consensus 633 M~hE~s~~~ek~q 645 (1222)
|..+=...++++-
T Consensus 172 l~~ell~~yeri~ 184 (239)
T COG1579 172 LDPELLSEYERIR 184 (239)
T ss_pred cCHHHHHHHHHHH
Confidence 8876666666554
No 91
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.30 E-value=54 Score=34.03 Aligned_cols=94 Identities=31% Similarity=0.426 Sum_probs=73.7
Q ss_pred HhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhH
Q 000927 229 EVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENE 308 (1222)
Q Consensus 229 Ea~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~ 308 (1222)
.+.-+..+++-++++++.|-..+..++-||..=..-+|.+|..-...|.+-..+|.++..+..... .||.
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-~l~r--------- 80 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-QLNR--------- 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-HHHh---------
Confidence 444556677888889999999999999999999999999999999999999999998888876655 3333
Q ss_pred HHHHHhhhhHHHHHhhhhhhhhhhH
Q 000927 309 RILKQKERDLEELEKKIDLSSSKLK 333 (1222)
Q Consensus 309 ~~lk~kekeLEe~~kkie~~~~~Lk 333 (1222)
-+...+.+|+.+.+++..+...|.
T Consensus 81 -riq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 81 -RIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778888888888776666653
No 92
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.00 E-value=2e+02 Score=38.67 Aligned_cols=108 Identities=21% Similarity=0.279 Sum_probs=73.4
Q ss_pred chhhHHHHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHH
Q 000927 198 TLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLR 277 (1222)
Q Consensus 198 KLaEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~ 277 (1222)
|++.++.=+.....|.-++..||-.-+|+++++......-++.+.+.-+.-+.++|+-+-+..+.--.+..|.+-+....
T Consensus 296 k~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d 375 (1074)
T KOG0250|consen 296 KVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVD 375 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555666666666667777777777777788888888888899888888887777777777777777
Q ss_pred HHHHhhchhhhhh-HHHHHhhhhHHhhhh
Q 000927 278 EWEKKLQIGDERL-SELRRTLNQREVKAN 305 (1222)
Q Consensus 278 eweKkLqe~eerL-~~~qr~LNqREe~~~ 305 (1222)
..+|.+-..++++ -.++..+-+++..++
T Consensus 376 ~l~k~I~~~~~~~~~~~~~~~~e~e~k~~ 404 (1074)
T KOG0250|consen 376 RLEKQIADLEKQTNNELGSELEERENKLE 404 (1074)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 7777766666666 444444555555444
No 93
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=79.70 E-value=67 Score=35.95 Aligned_cols=79 Identities=25% Similarity=0.322 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000927 490 ESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKE 568 (1222)
Q Consensus 490 Eel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~E 568 (1222)
+.|..+..+..+....+......|..--+++++.++++..|-..+.++.+++..++.+..-..+|-..|.++...++.+
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~ 90 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAE 90 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888999999999989999999999999888888888888777776666655555555444444333
No 94
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=79.55 E-value=1.6e+02 Score=35.97 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=40.9
Q ss_pred HhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000927 503 ESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKE 568 (1222)
Q Consensus 503 ~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~E 568 (1222)
++.+..........+.+|..+..|+.. +..+|-.+|..-+...++|-+.+..|+.+..+-|.+
T Consensus 184 q~~l~~~~~eq~~q~~kl~~~~~E~kk---~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 184 QAELTTLLSEQRAQQAKLAQLLEERKK---TLAQLNSELSADQKKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333334444455555566555554 456777777788888888888888888888776644
No 95
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=79.19 E-value=2.2e+02 Score=37.42 Aligned_cols=109 Identities=21% Similarity=0.297 Sum_probs=73.2
Q ss_pred HhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhH---HHHHHHHHHHHhhhhhhhhhh
Q 000927 356 LRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSI---EEEMRSKISALDQQEFEISHR 432 (1222)
Q Consensus 356 ~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~---eeel~~K~~~~e~rEvel~h~ 432 (1222)
++--|-..+..|.+||-++.-+|. +.|+| ++-.+.+..-+.+-|.|||+-+--+ +.+|.+|+.++--.=.+|+..
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~-ekq~l-Q~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk 174 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEM-EKQKL-QDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDK 174 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 334445567788888888888874 45554 4455667777788888888877544 345666666666666666666
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHH
Q 000927 433 EEKLERREQALDKKSDRVKEKENDLAARLKSVKE 466 (1222)
Q Consensus 433 Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKE 466 (1222)
=..|..-+-.+..++....+..+.+..|++.++|
T Consensus 175 ~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 175 NEELNEFNMEFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666777777777777777777766654
No 96
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=79.07 E-value=2.1e+02 Score=37.10 Aligned_cols=290 Identities=23% Similarity=0.341 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHH----HHhhhhhhhhhhHHHHHHHHHHHHHhhhHH-HHHHH
Q 000927 381 EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKIS----ALDQQEFEISHREEKLERREQALDKKSDRV-KEKEN 455 (1222)
Q Consensus 381 eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~----~~e~rEvel~h~Eekl~krEqaLe~k~~~l-keKEk 455 (1222)
--|.|-..+.-.++.--+-||.|+-++.+-+|-||++=.+ .+|.-|.+-.|+ |---..++ -|.|+
T Consensus 809 ~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~h~~r----------lR~eakRir~EQek 878 (1187)
T KOG0579|consen 809 QQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQAHEHR----------LRNEAKRIRIEQEK 878 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhhHH
Confidence 3455666666666666778999999988888888876433 223333332222 11111111 13333
Q ss_pred HHHH---HHhhHHHHHH-------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--------HHHHHHH
Q 000927 456 DLAA---RLKSVKEREK-------------FVKAEEKKLELEKQKLIADKESLQILKVEIDQIES--------ENAQQEL 511 (1222)
Q Consensus 456 dl~~---K~k~LKEkEk-------------sL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a--------~~e~q~~ 511 (1222)
|+.. +||.-|...+ +|+.--.+++-+++ +++|+=+.+.+.+++-++. ++..-.+
T Consensus 879 d~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~q--l~ekdFv~kqqq~le~~lkrm~~~~k~ema~iEr 956 (1187)
T KOG0579|consen 879 DMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQ--LKEKDFVMKQQQNLEAMLKRMAEKHKEEMASIER 956 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3322 2222222222 34333334444443 3455555555555554433 2222222
Q ss_pred HHHHHHhh-hhccHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhHHhHHHHH
Q 000927 512 QIQEECQK-LKINEEEK---------SELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKE-WEVLDEKRDEIN 580 (1222)
Q Consensus 512 qi~ee~e~-LkiteeER---------~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~E-WE~LDEKR~el~ 580 (1222)
+..-.+++ |.+-+.-- .-|.-+.-+|| |.|=+|.-.|++-.+.=..|-+++--+ -|.| ||..-+
T Consensus 957 ecLm~Kq~LlRarEaaiWElEe~qlqEkhqL~kqqlK---DqYflqRhqlL~rHekE~eQmqrynQr~ie~L--k~rqtq 1031 (1187)
T KOG0579|consen 957 ECLMQKQNLLRAREAAIWELEEKQLQEKHQLHKQQLK---DQYFLQRHQLLARHEKEMEQMQRYNQREIEDL--KRRQTQ 1031 (1187)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 22222222 22222211 11222233444 455555556777666666666666432 2222 222211
Q ss_pred --------------------HHHHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 000927 581 --------------------KEQEKI------ADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR 634 (1222)
Q Consensus 581 --------------------kE~~~I------~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~ 634 (1222)
|+--+| ++.|+++..|-.-|+.|-|.+..+-.-.+.+++-.|....++-+-..
T Consensus 1032 erarLPKiqRSE~KTRmaMfKkSLrIn~~~s~ae~rekIkqF~~QEekRqk~er~~q~qKhenqmrdl~~qce~ni~EL- 1110 (1187)
T KOG0579|consen 1032 ERARLPKIQRSETKTRMAMFKKSLRINANMSNAEMREKIKQFDEQEEKRQKAEREDQDQKHENQMRDLKEQCEENIIEL- 1110 (1187)
T ss_pred HHhhcchhhhhhhHHHHHHHHHheeccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 111122 57899999999999999999999888888888888888777655443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000927 635 HEQLVLSEKAKNDRRKMLEEFEMQRM-NQEAELLNRRDKMEKELQERTRTFEEKRERVLNDI 695 (1222)
Q Consensus 635 hE~s~~~ek~q~Erad~l~d~E~qkr-eLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~I 695 (1222)
-.+|+|+-.+|-.-|-|+. +|+..-..-++.---.|.-|...+|++-+-++..|
T Consensus 1111 -------~qlQNEKchlLvEhEtqklKelde~h~~~~~~w~e~l~~rk~~lee~~~~~~req 1165 (1187)
T KOG0579|consen 1111 -------DQLQNEKCHLLVEHETQKLKELDEKHHEMRELWQENLIARKTVLEEKFEDELREQ 1165 (1187)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 3688999999988888874 56666666677777788888888888877766554
No 97
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=78.04 E-value=2.6e+02 Score=37.59 Aligned_cols=130 Identities=31% Similarity=0.322 Sum_probs=71.3
Q ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000927 443 LDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKL-------IADKESLQILKVEIDQIESENAQQELQIQE 515 (1222)
Q Consensus 443 Le~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L-------~~dkEel~~lK~elEK~~a~~e~q~~qi~e 515 (1222)
|.++.+-|.+.=+++...+-.|...+|.|.-+.++|..+.... ..+.+.+..+........+..++-.-+|..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554444444444444444444444444444443332222 123344444444555555555555555555
Q ss_pred HHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 000927 516 ECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVL 572 (1222)
Q Consensus 516 e~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~L 572 (1222)
....|.-..-|.+-+.-+-.+||+++-+|=-|-..+..=++.|.+.+-..|.|-..|
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~L 549 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHL 549 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 555555555555555556667777777777777777777777777777766665544
No 98
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.45 E-value=76 Score=38.83 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q 000927 539 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 618 (1222)
Q Consensus 539 eEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kre 618 (1222)
.+++..|++-+++..|++.|+++-..-+++=..+.-|-.+++-.+++...|...+. .+...|....+.-+.+++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~ 422 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER----EENKKLIKNQDVWRGKLKEL 422 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Confidence 58899999999999999999999888888888888888888888888777665554 44555666666666666666
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000927 619 IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRR 670 (1222)
Q Consensus 619 lE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLE~~~~~r~ 670 (1222)
-+.++.+.-+.- -++.|++-|=|+|=.-|...+
T Consensus 423 ~e~~~~~~~s~d-------------------~~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 423 EEREKEALGSKD-------------------EKITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHH-------------------HHHHHHHHHHHhHheehhhhh
Confidence 555544443322 234477777777655555443
No 99
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=77.23 E-value=39 Score=42.52 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=25.0
Q ss_pred cccchhhHHHHhhhhccchhHHHhhhhhHHHHHHHhhccchH
Q 000927 195 SEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSE 236 (1222)
Q Consensus 195 sesKLaEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~ 236 (1222)
.+.|...+..-..-+.+...++..+|..|+++++.--+++..
T Consensus 185 ~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l 226 (754)
T TIGR01005 185 GAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDL 226 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344445555555556666666677777777766666555443
No 100
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=77.10 E-value=2e+02 Score=35.72 Aligned_cols=85 Identities=29% Similarity=0.313 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000927 523 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEE 602 (1222)
Q Consensus 523 teeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~e 602 (1222)
..+-|.|--.||++||.=--.|++=.+.-+.|. |+|-+|=--|=.+|-=--.-..|..++...|-.+++-.-+--+
T Consensus 406 LqEsr~eKetLqlelkK~k~nyv~LQEry~~ei----QqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALd 481 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANYVHLQERYMTEI----QQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALD 481 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999899998888888887 6889998888888765555566778888888899998889999
Q ss_pred HhHHHHHHH
Q 000927 603 RLKKEECAM 611 (1222)
Q Consensus 603 rLK~Ek~~~ 611 (1222)
+||.||..-
T Consensus 482 lLkrEKe~~ 490 (527)
T PF15066_consen 482 LLKREKETR 490 (527)
T ss_pred HHHHHHHHH
Confidence 999998764
No 101
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=76.28 E-value=92 Score=34.57 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHhhhh
Q 000927 616 QREIEAIRLDKEAFEATMRHEQLVLSE---KAKNDRRKMLE-EFEMQRMN 661 (1222)
Q Consensus 616 krelE~L~~ekEsF~~~M~hE~s~~~e---k~q~Erad~l~-d~E~qkre 661 (1222)
+.+|-..+..++.|+...++||..|.+ |+-.=..|+.. =++|-+||
T Consensus 144 ~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn 193 (202)
T PF06818_consen 144 RAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRN 193 (202)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677888999999999999974 33333344433 34555443
No 102
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=75.82 E-value=54 Score=37.91 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000927 525 EEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQ 560 (1222)
Q Consensus 525 eER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ 560 (1222)
.+.+.+..-..++.++.+.+-.|........+.|+.
T Consensus 99 ~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 99 REYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555666677777777887777777777763
No 103
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.68 E-value=1e+02 Score=31.42 Aligned_cols=74 Identities=31% Similarity=0.433 Sum_probs=52.0
Q ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 000927 445 KKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK 521 (1222)
Q Consensus 445 ~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk 521 (1222)
....+|+++-..+..++..+..++..+ .+.+......+...++++..++.-++..++....+.++...+.++|+
T Consensus 73 ~~~~rL~~~~~~~ere~~~~~~~~~~l---~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 73 NDVERLKEQLEELERELASAEEKERQL---QKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555444 34446666778888999999999999999999999999988887775
No 104
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.38 E-value=1.2e+02 Score=31.92 Aligned_cols=88 Identities=23% Similarity=0.391 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 000927 537 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ 616 (1222)
Q Consensus 537 LKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~k 616 (1222)
|-.+++.....++.+..+++.-+.+-..++.+-+.+...+..|.-|+..+..+|+.|.+-+.....++
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv------------ 96 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKV------------ 96 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 45667777888888999999999999999999999999999999999999977777776664443333
Q ss_pred HHHHHhhhcHHHHHHHHHHH
Q 000927 617 REIEAIRLDKEAFEATMRHE 636 (1222)
Q Consensus 617 relE~L~~ekEsF~~~M~hE 636 (1222)
.+||++...-..+...-+.+
T Consensus 97 ~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 97 SELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 24555554444444444433
No 105
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=74.12 E-value=48 Score=38.30 Aligned_cols=13 Identities=0% Similarity=-0.107 Sum_probs=6.1
Q ss_pred HHhhhhhcHHHHH
Q 000927 733 QQLGMRKDIDELD 745 (1222)
Q Consensus 733 q~~em~kdIeeL~ 745 (1222)
.|.||+.=...+.
T Consensus 167 ~W~EINAA~Gq~~ 179 (314)
T PF04111_consen 167 EWNEINAAWGQTA 179 (314)
T ss_dssp -HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 4555555444433
No 106
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=73.85 E-value=2.4e+02 Score=35.11 Aligned_cols=277 Identities=18% Similarity=0.233 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHH---------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 000927 451 KEKENDLAARLKSVKEREKFVKA---------EEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK 521 (1222)
Q Consensus 451 keKEkdl~~K~k~LKEkEksL~a---------eEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk 521 (1222)
.+..+.|=.-+..|+.==+.|.. .+++|..-+.+|..-...|..+ +|+...+.+..=..+|+.=-+.|+
T Consensus 222 ~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~le 299 (569)
T PRK04778 222 KELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILE 299 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544444432 3444444445554444445544 555666666666666776667776
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 000927 522 INEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQD----------REKFEKEWEVLDEKRDEINKEQEKIADEKK 591 (1222)
Q Consensus 522 iteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~e----------kekFE~EWE~LDEKR~el~kE~~~I~eEre 591 (1222)
--..-+...-.....|..-|++++.+-..|..|.+.|++. ...|+++-+.|...-..+........ .
T Consensus 300 kE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~---~ 376 (569)
T PRK04778 300 REVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQE---I 376 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---C
Confidence 6677778888889999999999999999999999999877 44444444444433333332211111 1
Q ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000927 592 KLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRD 671 (1222)
Q Consensus 592 ~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLE~~~~~r~E 671 (1222)
.++. -...-+.+...++.+.-++.+|...+. . + +.-|.++.++..
T Consensus 377 ~yse------------l~e~leel~e~leeie~eq~ei~e~l~-----------~--------L----rk~E~eAr~kL~ 421 (569)
T PRK04778 377 AYSE------------LQEELEEILKQLEEIEKEQEKLSEMLQ-----------G--------L----RKDELEAREKLE 421 (569)
T ss_pred CHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--------H----HHHHHHHHHHHH
Confidence 1111 111111222223333333322222222 1 1 111222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHh
Q 000927 672 KMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRL 751 (1222)
Q Consensus 672 E~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KL 751 (1222)
.+...|. +-++.-+..|+..+=+-.-.-...+.-+..+|.++......|=...+.+..+...+++.|..+..-|
T Consensus 422 ~~~~~L~------~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL 495 (569)
T PRK04778 422 RYRNKLH------EIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEEL 495 (569)
T ss_pred HHHHHHH------HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 2222223334444444444444455555556666666666777777777777777777777777777
Q ss_pred hHhHHH---HHHHHHHHHHHHHhhc
Q 000927 752 YGDREQ---FKREKERFLEFVEKHT 773 (1222)
Q Consensus 752 k~qRE~---~~~eRe~fl~~vEklK 773 (1222)
-+...+ ++..+++|..++....
T Consensus 496 ~~~a~~lE~~Iqy~nRfr~~~~~V~ 520 (569)
T PRK04778 496 VENATLTEQLIQYANRYRSDNEEVA 520 (569)
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHH
Confidence 776654 4566777765554443
No 107
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=73.83 E-value=2.4e+02 Score=35.10 Aligned_cols=61 Identities=25% Similarity=0.356 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 000927 534 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLE 594 (1222)
Q Consensus 534 qseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~le 594 (1222)
...|.++|..+..+...+...+......-..+..+|+.|.++..+|.++...|.+.=..|.
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lr 410 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLR 410 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777788888888888888888888889999999999999999999888885444433
No 108
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=72.92 E-value=2.6e+02 Score=35.16 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=27.1
Q ss_pred HHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHH
Q 000927 353 ADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEE 413 (1222)
Q Consensus 353 ~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~ee 413 (1222)
+..++..++.-+..|..++.++..- . .-+.+.+..|..++...+.++...++.+..
T Consensus 232 i~~l~~ele~a~~~l~~l~~~~~~~-G----G~~~~~r~~Le~ei~~le~e~~e~~~~l~~ 287 (650)
T TIGR03185 232 IAHLRNELEEAQRSLESLEKKFRSE-G----GDLFEEREQLERQLKEIEAARKANRAQLRE 287 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-c----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555544431 1 122333455556666666666655555543
No 109
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=70.59 E-value=1.3e+02 Score=31.99 Aligned_cols=171 Identities=20% Similarity=0.320 Sum_probs=92.9
Q ss_pred HHHHHHHHHhHhhhhhcccceee-----ec-cchhhhHHHHHHhHHHHHHHHHHhhhhh----hhHHHHHHHhHHHHHHh
Q 000927 97 MEKVSKLEKELYDYQYNMGLLLI-----EK-KEWTSKIEELRQSFEETQEILKREQSAH----LIAFSEAEKREDNLRRA 166 (1222)
Q Consensus 97 ia~iskLE~ElydYQynMGLLLi-----Ek-KEwtSk~eel~qa~~e~~~~lKREqaAh----l~ALsEaeKREEnLkKA 166 (1222)
+..|.+-..+|....+++|..+. |- +..+.-+..+..++.....++.+--... ...|.++-.==.++|.+
T Consensus 47 ~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~ 126 (236)
T PF09325_consen 47 LERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEA 126 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444332 22 2344455555555555544443321111 22344455555555555
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhcccccchhhHHHHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhh
Q 000927 167 LSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELES 246 (1222)
Q Consensus 167 LgvEKqCVadLEKAL~emr~E~AeiK~~sesKLaEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEa 246 (1222)
|.-=..|...++-|..++..-.+.. ..|..+ ..--..|+..|...+.++.++...+.+++..+-.
T Consensus 127 l~~R~~~~~~~~~a~~~l~kkk~~~-----------~kl~~~----~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~ 191 (236)
T PF09325_consen 127 LNRRDKKLIEYQNAEKELQKKKAQL-----------EKLKAS----GKNRQDKVEQAENEIEEAERRVEQAKDEFEEISE 191 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------hccccc----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554445444444444433322221 111111 1111456667777777777777888888888854
Q ss_pred hHHHHHHHHhhhHhHHH---------hHHHHHHHhHhhHHHHHHhhch
Q 000927 247 RESVIKRERLSLVTERE---------AHEAAFYKQREDLREWEKKLQI 285 (1222)
Q Consensus 247 RE~~LrRerlSf~~Ere---------a~E~~~~~qRe~L~eweKkLqe 285 (1222)
.++.+.-.|..++- =.+..|..+++.+..|+.-|.|
T Consensus 192 ---~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~~ 236 (236)
T PF09325_consen 192 ---NIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLPE 236 (236)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 47888888887765 3477889999999999987754
No 110
>PF13514 AAA_27: AAA domain
Probab=70.02 E-value=3.8e+02 Score=35.90 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=15.2
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHH
Q 000927 745 DILCRRLYGDREQFKREKERFLEFV 769 (1222)
Q Consensus 745 ~~ls~KLk~qRE~~~~eRe~fl~~v 769 (1222)
..||.=-++| +|.+=|=.|+.++
T Consensus 1024 ~~LS~GT~dQ--LYLALRLA~~e~~ 1046 (1111)
T PF13514_consen 1024 EELSRGTRDQ--LYLALRLALAELL 1046 (1111)
T ss_pred HHhCHHHHHH--HHHHHHHHHHHHH
Confidence 3456555555 7888887777655
No 111
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.95 E-value=3.1e+02 Score=34.79 Aligned_cols=89 Identities=27% Similarity=0.342 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 472 KAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELL 551 (1222)
Q Consensus 472 ~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~L 551 (1222)
.+.++.|+.-+..+..--++++.++.+.-.++..++.| .|+-++=..+..=--+|+++++++-.+.+.|
T Consensus 290 ~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-----------~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 290 QHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-----------GISGEDVERMNLERNKLKRELNKIQSELDRL 358 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555544444444455555555555555555544 4444444444444557889999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhh
Q 000927 552 LKEHEDLQQDREKFEKEWEV 571 (1222)
Q Consensus 552 lkEae~Lk~ekekFE~EWE~ 571 (1222)
++++=+++-+-+.|=++-+.
T Consensus 359 ~k~vw~~~l~~~~~f~~le~ 378 (581)
T KOG0995|consen 359 SKEVWELKLEIEDFFKELEK 378 (581)
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 99999999888887665443
No 112
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=68.61 E-value=59 Score=36.75 Aligned_cols=83 Identities=29% Similarity=0.390 Sum_probs=67.8
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000927 527 KSELLRLQ-----SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAE 601 (1222)
Q Consensus 527 R~E~l~Lq-----seLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~ 601 (1222)
|.=+-.|| |.||+-.+.||-.-+++.+|-+.|..+-+..+.|.+.+.+.-..|+.|.-.+.+.+.++. .|-
T Consensus 118 RAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~----~ev 193 (290)
T COG4026 118 RAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP----GEV 193 (290)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----hHH
Confidence 44455666 899999999999999999999999999999999999999999999999988887665543 456
Q ss_pred HHhHHHHHHHHH
Q 000927 602 ERLKKEECAMRD 613 (1222)
Q Consensus 602 erLK~Ek~~~r~ 613 (1222)
.+|+..-+.+.+
T Consensus 194 ~~L~~r~~ELe~ 205 (290)
T COG4026 194 YDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHhcc
Confidence 667766655544
No 113
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=67.66 E-value=2.2e+02 Score=32.34 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHH
Q 000927 170 EKQCVADLEKALRDM 184 (1222)
Q Consensus 170 EKqCVadLEKAL~em 184 (1222)
+-+|.+-+++|+.--
T Consensus 38 e~e~~~A~~~A~~~Y 52 (297)
T PF02841_consen 38 EAENRAAVEKAVEHY 52 (297)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555333
No 114
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=66.45 E-value=4e+02 Score=34.79 Aligned_cols=89 Identities=26% Similarity=0.343 Sum_probs=56.6
Q ss_pred hhhHHHHHhh---hhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Q 000927 288 ERLSELRRTL---NQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKE 364 (1222)
Q Consensus 288 erL~~~qr~L---NqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KE 364 (1222)
.+|-+.|-+| ..||.++.|.+..+.+...-||.-.+.++.--.. .+.+|..|...+..+|.-+-..+..+-..|
T Consensus 481 k~~~~a~gvldaaaarErrAsE~eas~r~R~~ALEara~ALeERAr~---~e~~L~~Re~a~a~Re~TLAahEaa~AE~E 557 (828)
T PF04094_consen 481 KRVDDARGVLDAAAARERRASEAEASLRAREEALEARAKALEERARA---AERSLEERERAAAQREATLAAHEAAAAEEE 557 (828)
T ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4566677777 5699999999999999899999888877554222 223455555555555544444444444555
Q ss_pred HhHHHHHHHHhhHHH
Q 000927 365 KRLLTIEEKLNARER 379 (1222)
Q Consensus 365 keLl~leEKL~aRE~ 379 (1222)
..|...++-++.|++
T Consensus 558 ~aLRLREeA~aER~~ 572 (828)
T PF04094_consen 558 SALRLREEALAERDR 572 (828)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555554
No 115
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=66.37 E-value=2.4e+02 Score=32.26 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=24.4
Q ss_pred hhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhh
Q 000927 246 SRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTL 297 (1222)
Q Consensus 246 aRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~L 297 (1222)
++...+..+...|.++...++..+..-+..+..++..+...+..+...+..+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 130 GQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555444445555544444444444444333
No 116
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.20 E-value=1.4e+02 Score=33.58 Aligned_cols=90 Identities=20% Similarity=0.288 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH---HHH
Q 000927 525 EEKSELLRLQSQLKQQIETYRHQQE---LLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK---LQH 598 (1222)
Q Consensus 525 eER~E~l~LqseLKeEIe~~R~Qke---~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek---~~~ 598 (1222)
.=..+|-.+-..|.++++.++.... ++.+|.+.|-+||..+..|--.|..=.-.|+...+....+|.+... .++
T Consensus 8 ~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 8 NKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666777777666665543 3445666666666666666666665555555555555544443322 223
Q ss_pred hHHHHhHHHHHHHHHH
Q 000927 599 SAEERLKKEECAMRDY 614 (1222)
Q Consensus 599 ~E~erLK~Ek~~~r~~ 614 (1222)
.|...||.+-+.||..
T Consensus 88 eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 88 EEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666665555544
No 117
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=65.72 E-value=2.8e+02 Score=32.79 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000927 675 KELQERTRTFEEKRERVLNDIAHLKEVAEG 704 (1222)
Q Consensus 675 ~~L~EREk~FEeek~~EL~~In~lke~a~k 704 (1222)
+||++|-+..++|+.--..+|+-.|.++.+
T Consensus 199 RyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 199 RYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999988887663
No 118
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=65.55 E-value=2.1e+02 Score=33.62 Aligned_cols=121 Identities=16% Similarity=0.347 Sum_probs=97.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Q 000927 495 LKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDE 574 (1222)
Q Consensus 495 lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDE 574 (1222)
|-..|+.-...|.+---|++.+.-+|.--..++.|+++ ....+=|+.+++|..+|+...+ .+|+++.+.|.-
T Consensus 4 mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr--~rVrq~V~hVqaqEreLLe~v~------~rYqR~y~ema~ 75 (324)
T PF12126_consen 4 MTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIR--ARVRQVVAHVQAQERELLEAVE------ARYQRDYEEMAG 75 (324)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 34455555666777778899999999999999999995 5677899999999999997765 578889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcH
Q 000927 575 KRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDK 626 (1222)
Q Consensus 575 KR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ek 626 (1222)
+--.|..=+.+|..==--++|+++.-.| +|-..|...+..-|+.|+.++
T Consensus 76 ~L~~LeavLqRir~G~~LVekM~~YASD---QEVLdMh~FlreAL~rLrqee 124 (324)
T PF12126_consen 76 QLGRLEAVLQRIRTGGALVEKMKLYASD---QEVLDMHGFLREALERLRQEE 124 (324)
T ss_pred HHhHHHHHHHHHHhHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999998777777777776655 577888888888888877643
No 119
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=65.45 E-value=3.3e+02 Score=33.50 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhhHhHHHHH
Q 000927 715 QLEKEKHEVKVNREKLQEQ 733 (1222)
Q Consensus 715 rLekEr~Ei~~~ke~le~q 733 (1222)
.|-.||.-+.+.-+++..+
T Consensus 410 ~l~~ek~al~lqlErl~~~ 428 (511)
T PF09787_consen 410 SLGSEKNALRLQLERLETQ 428 (511)
T ss_pred HHHhhhhhccccHHHHHHH
Confidence 5666777666666665544
No 120
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=65.02 E-value=3.1e+02 Score=33.02 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=12.6
Q ss_pred HHHHhhhHH-HHHHHHHHHHHhhHHHHH
Q 000927 442 ALDKKSDRV-KEKENDLAARLKSVKERE 468 (1222)
Q Consensus 442 aLe~k~~~l-keKEkdl~~K~k~LKEkE 468 (1222)
|++++.++| ++.|.|-.++...-++=+
T Consensus 111 AaE~khrKli~dLE~dRe~haqdaaeGD 138 (561)
T KOG1103|consen 111 AAEKKHRKLIKDLEADREAHAQDAAEGD 138 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 444444443 445555555554444433
No 121
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=64.42 E-value=3.4e+02 Score=33.27 Aligned_cols=63 Identities=16% Similarity=0.108 Sum_probs=32.8
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 000927 521 KINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQ 583 (1222)
Q Consensus 521 kiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~ 583 (1222)
.++.++=....||..-+-.=.--.+.+...|.+..-.|...+...+.|=..|+....+...+.
T Consensus 136 l~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~ 198 (420)
T COG4942 136 LVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQ 198 (420)
T ss_pred hcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444454444444433332222333445556666667777777777766666655555444433
No 122
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=62.58 E-value=3.2e+02 Score=32.35 Aligned_cols=39 Identities=31% Similarity=0.282 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhccccch
Q 000927 740 DIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNC 778 (1222)
Q Consensus 740 dIeeL~~ls~KLk~qRE~~~~eRe~fl~~vEklK~cknc 778 (1222)
|||.|-+=.+-|+.+=.++..|++=...-|-+||+-=.|
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999965444
No 123
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=62.10 E-value=2.6 Score=52.68 Aligned_cols=80 Identities=20% Similarity=0.335 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHH
Q 000927 430 SHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQ 509 (1222)
Q Consensus 430 ~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q 509 (1222)
.|.=+++.+.|..+++=-.+|.+. .+|..+++.|++.=..+.----.||.+....-+-+..|..|+..|..+...+.+.
T Consensus 304 R~~a~r~~klE~~ve~YKkKLed~-~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~ 382 (713)
T PF05622_consen 304 REKADRADKLENEVEKYKKKLEDL-EDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEE 382 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555443 3455555555554443333333333333333334444444444444444444433
Q ss_pred H
Q 000927 510 E 510 (1222)
Q Consensus 510 ~ 510 (1222)
.
T Consensus 383 ~ 383 (713)
T PF05622_consen 383 S 383 (713)
T ss_dssp -
T ss_pred H
Confidence 3
No 124
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=62.05 E-value=1e+02 Score=38.99 Aligned_cols=61 Identities=31% Similarity=0.400 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 000927 523 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIA 587 (1222)
Q Consensus 523 teeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~ 587 (1222)
.+.|-++|.+.=.+||.+|++++.+...+..+++ .+.+-.+|-+.+|..-..|++++..=.
T Consensus 434 l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 434 LEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777888899999998888888877 555667788888888888888776544
No 125
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=61.34 E-value=2.5e+02 Score=30.72 Aligned_cols=52 Identities=23% Similarity=0.386 Sum_probs=22.1
Q ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHH
Q 000927 421 ALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVK 472 (1222)
Q Consensus 421 ~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~ 472 (1222)
.+.+...++.+.+..+..-.+.++.....+..+.+.+...-..|..+...|.
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444333333
No 126
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=61.30 E-value=5.2e+02 Score=34.33 Aligned_cols=336 Identities=20% Similarity=0.244 Sum_probs=183.7
Q ss_pred hhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhH
Q 000927 257 SLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKERE 336 (1222)
Q Consensus 257 Sf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~ke 336 (1222)
+.+++....+.+++--+.++.---+.|+..-+.|.+...-+|+.=+.+++--+.+..|-+.+.+.-..-|.....+.+-.
T Consensus 145 ~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q 224 (1265)
T KOG0976|consen 145 NLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQ 224 (1265)
T ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 44455556666666666666666667777777888877778777666665555555555555555443333222221111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHH
Q 000927 337 ---DEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEE 413 (1222)
Q Consensus 337 ---ddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~ee 413 (1222)
-+|..+.-.|+.+=.-+..++..+-+-|..--.|| +++++-.|--.-+.--+..|..-+.+||-=.-.+..-|++
T Consensus 225 ~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq--~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~ 302 (1265)
T KOG0976|consen 225 ENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQ--ASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDT 302 (1265)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 23555566666666666666666665443333332 4566666666666677788888888888777777777777
Q ss_pred HHHHHHHHHhhhhh--hhhhhHHHHHHHHH-----HHH---HhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH
Q 000927 414 EMRSKISALDQQEF--EISHREEKLERREQ-----ALD---KKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQ 483 (1222)
Q Consensus 414 el~~K~~~~e~rEv--el~h~Eekl~krEq-----aLe---~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~ 483 (1222)
+-+..-++.---|. .+-|.|-+-.+|+. +|- .+.+.+.+|-+||+-|-.-+-.-=.+|.-.-+..+.+++
T Consensus 303 lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elq 382 (1265)
T KOG0976|consen 303 LKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQ 382 (1265)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 66666655543332 23344443333332 221 223334444444444333333333333333333333333
Q ss_pred HHHhh-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH---HHHH--------HHHHHH
Q 000927 484 KLIAD-------KESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQS---QLKQ--------QIETYR 545 (1222)
Q Consensus 484 ~L~~d-------kEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~Lqs---eLKe--------EIe~~R 545 (1222)
-|+.. -+++.+--.-++..+..-+.-+-.+.++.++|-.|..+++.+----+ -||+ -|+.|-
T Consensus 383 sL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcn 462 (1265)
T KOG0976|consen 383 SLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCN 462 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHH
Confidence 32222 12222222334444444555556677788888888887764321100 1222 355554
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 546 HQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQH 598 (1222)
Q Consensus 546 ~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~ 598 (1222)
-.-.+|.+=.+.|..+| +.+-|.+.| ++++.+++++|..-+|.|-+.+.
T Consensus 463 emv~rir~l~~sle~qr-KVeqe~eml---Kaen~rqakkiefmkEeiQethl 511 (1265)
T KOG0976|consen 463 EMVDRIRALMDSLEKQR-KVEQEYEML---KAENERQAKKIEFMKEEIQETHL 511 (1265)
T ss_pred HHHHHHHHHhhChhhhc-chHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444544444444433 567777665 78999999999988887776654
No 127
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=60.42 E-value=4e+02 Score=33.29 Aligned_cols=7 Identities=0% Similarity=0.169 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 000927 498 EIDQIES 504 (1222)
Q Consensus 498 elEK~~a 504 (1222)
|++++..
T Consensus 336 D~qk~~~ 342 (489)
T PF05262_consen 336 DQQKLIE 342 (489)
T ss_pred HHHHHHh
Confidence 3333333
No 128
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=60.39 E-value=2e+02 Score=29.22 Aligned_cols=96 Identities=20% Similarity=0.309 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000927 490 ESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEW 569 (1222)
Q Consensus 490 Eel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EW 569 (1222)
..+..+...+..++..+..+-.....++++.+--=---.+...-=..||++...++.+...|-.+++..+.....-+.-|
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw 96 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444555666666666666666666666633111011111222246777777788888888888888777777777777
Q ss_pred hhhHHhHHHHHHHHHHHHH
Q 000927 570 EVLDEKRDEINKEQEKIAD 588 (1222)
Q Consensus 570 E~LDEKR~el~kE~~~I~e 588 (1222)
+ +-+..|.++...+..
T Consensus 97 ~---~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 97 E---EQKEQLEKELSELEQ 112 (132)
T ss_pred H---HHHHHHHHHHHHHHH
Confidence 5 345555555554443
No 129
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=59.54 E-value=2.9e+02 Score=30.78 Aligned_cols=173 Identities=20% Similarity=0.297 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 474 EEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLK 553 (1222)
Q Consensus 474 eEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~Llk 553 (1222)
--++|..+...|...-+-+....+-|---...+..+.+-+.++-+.-+..++|=.+ ||..+-.+=.+..-|++
T Consensus 16 ~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEled-------Lk~~~~~lEE~~~~L~a 88 (193)
T PF14662_consen 16 NNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELED-------LKTLAKSLEEENRSLLA 88 (193)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333344444444444555555555544332 33444444456777888
Q ss_pred HHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHH
Q 000927 554 EHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATM 633 (1222)
Q Consensus 554 Eae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M 633 (1222)
.+-.|..+.+.+.++|+.|-+....|.-+...+... ...|-.++.+++.++- ..++|-+.|++|.+.-
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~-----------~~eL~~~~~~Lq~Ql~-~~e~l~~~~da~l~e~ 156 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKR-----------SKELATEKATLQRQLC-EFESLICQRDAILSER 156 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH-----------HHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 888888999999999988888777777666655533 2344456666666652 5789999999998876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 000927 634 RHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAEL 666 (1222)
Q Consensus 634 ~hE~s~~~ek~q~Erad~l~d~E~qkreLE~~~ 666 (1222)
-+--..+..-|. |-.....++-+-+..||.-|
T Consensus 157 t~~i~eL~~~ie-Ey~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 157 TQQIEELKKTIE-EYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 655555544333 44456666767777776655
No 130
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=59.48 E-value=3.1e+02 Score=31.20 Aligned_cols=111 Identities=15% Similarity=0.304 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH-HHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 000927 539 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIAD-EKKKLEKLQHSAEERLKKEECAMRDYVQR 617 (1222)
Q Consensus 539 eEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~e-Ere~lek~~~~E~erLK~Ek~~~r~~~kr 617 (1222)
+||+++-.|..+|.+....+.+....||++=+.|--+-++-++.-.+.+. .+..|-..++.+-++++.+ +....+.+
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~td--e~k~~~~~ 120 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTD--ELKNIAQN 120 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHH
Confidence 58999999999999999999999999999988888877777777666653 3556677777777777555 55566666
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 618 EIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEF 655 (1222)
Q Consensus 618 elE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~ 655 (1222)
+.-.++ .+-..|-+|.-.--++.++--..|..+|
T Consensus 121 ei~k~r----~e~~~ml~evK~~~E~y~k~~k~~~~gi 154 (230)
T PF03904_consen 121 EIKKVR----EENKSMLQEVKQSHEKYQKRQKSMYKGI 154 (230)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 655555 4555666665555566665555555554
No 131
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=56.66 E-value=4.7e+02 Score=32.41 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=30.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH
Q 000927 688 RERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQE 732 (1222)
Q Consensus 688 k~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~ 732 (1222)
-+..|..|+.|+.....-++++...+..++++...+...-..++.
T Consensus 306 le~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~ 350 (563)
T TIGR00634 306 IEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEA 350 (563)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344456677777777777888888888888777776655444433
No 132
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=56.49 E-value=2.6e+02 Score=36.32 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=13.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000927 480 LEKQKLIADKESLQILKVEIDQIESENAQQELQIQ 514 (1222)
Q Consensus 480 ~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ 514 (1222)
.++..++..++++..++.++++.+..++.+..++.
T Consensus 522 ~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 556 (771)
T TIGR01069 522 ALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELK 556 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444433333
No 133
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=56.42 E-value=1.6e+02 Score=32.99 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=25.5
Q ss_pred ccchhHHHhhhhhHHHHHHHhhccch-------HHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHH
Q 000927 210 EGKSLEVEEKFHAAEAKLAEVNRKSS-------ELEMKLQELESRESVIKRERLSLVTEREAHEAAFY 270 (1222)
Q Consensus 210 eeKslEvE~Kl~aAeaklAEa~Rk~s-------~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~ 270 (1222)
+.+..+.+.+|...+.....+...-. .++-+++.++.--..|.+.+.-+..+...++.+..
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~ 71 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAE 71 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444444444 44444444443333444444444444444433333
No 134
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=55.91 E-value=2.4e+02 Score=36.63 Aligned_cols=79 Identities=20% Similarity=0.239 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 470 FVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQE 549 (1222)
Q Consensus 470 sL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke 549 (1222)
.+...=.+|+.++.+++..++++..+..++++.+..++.++.++.++.++ ....++.+..+-|...|.+-+
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~---------~~~~~~~~a~~~l~~a~~~~~ 587 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK---------LLEEAEKEAQQAIKEAKKEAD 587 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555555433332 223344555566666666666
Q ss_pred HHHHHHhH
Q 000927 550 LLLKEHED 557 (1222)
Q Consensus 550 ~LlkEae~ 557 (1222)
.++++...
T Consensus 588 ~~i~~lk~ 595 (782)
T PRK00409 588 EIIKELRQ 595 (782)
T ss_pred HHHHHHHH
Confidence 66666543
No 135
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=55.75 E-value=5.9e+02 Score=33.24 Aligned_cols=366 Identities=23% Similarity=0.289 Sum_probs=176.9
Q ss_pred hhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhh
Q 000927 297 LNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNA 376 (1222)
Q Consensus 297 LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~a 376 (1222)
|-.|-..+-|-...-+.++=+|+++++.++.-- .|......+..-...|-..|.++. ..|..+|++++.|+..|++
T Consensus 386 Lqkks~eleEmtk~k~~ke~eleeL~~~L~e~q-kll~ekk~~eki~E~lq~~eqel~---~llq~~ekev~dLe~~l~~ 461 (786)
T PF05483_consen 386 LQKKSSELEEMTKQKNNKEVELEELKKILAEKQ-KLLDEKKQFEKIAEELQGTEQELT---GLLQIREKEVHDLEIQLTT 461 (786)
T ss_pred HHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHH
Confidence 334444444444555555666666666665443 344444445555666666666543 3477888888888887765
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHH
Q 000927 377 RERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKEND 456 (1222)
Q Consensus 377 RE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkd 456 (1222)
----+=.-+ ..+..-+.+||-| . .=..||-.+...+-+ .++.-+.+...=.+.-| -
T Consensus 462 ~~~~eq~ys-----kQVeeLKtELE~E--k---LKN~ELt~~~nkLsl------------Ekk~laQE~~~~~~elK--k 517 (786)
T PF05483_consen 462 IKESEQHYS-----KQVEELKTELEQE--K---LKNTELTVNCNKLSL------------EKKQLAQETSDMALELK--K 517 (786)
T ss_pred HHHhhHHHH-----HHHHHHHHHHHHH--H---HHHHHHHHHHHHHHH------------HHHHHHHHHHHhhhhHH--H
Confidence 321111100 1111112233321 1 112233333322211 11111111111111111 1
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH-
Q 000927 457 LAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQS- 535 (1222)
Q Consensus 457 l~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~Lqs- 535 (1222)
+....+.-|..+..|.-.=.+|+....+| |.+++.++.++.+...+++-...+..+-...+ + .|++....
T Consensus 518 ~qedi~~~k~qee~~~kqie~Lee~~~~L---rneles~~eel~~k~~Ev~~kl~ksEen~r~~---e---~e~~~k~kq 588 (786)
T PF05483_consen 518 QQEDINNSKKQEEKMLKQIENLEETNTQL---RNELESVKEELKQKGEEVKCKLDKSEENARSI---E---CEILKKEKQ 588 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHH---H---HHHhhhHHH
Confidence 22333344444444444444588888777 67777888888888877776655533221111 0 01111111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Q 000927 536 --QLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRD 613 (1222)
Q Consensus 536 --eLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~ 613 (1222)
-|.-.|..+|.|-+--.+=.+.|.++-.- |.-| +..|-+.++.---++.++. .|-+.+++--..|-+
T Consensus 589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~-------LKKk---~~aE~kq~~~~eikVn~L~-~E~e~~kk~~eE~~~ 657 (786)
T PF05483_consen 589 MKILENKCNNLRKQVENKNKNIEELQQENKA-------LKKK---ITAESKQSNVYEIKVNKLQ-EELENLKKKHEEETD 657 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHH
Confidence 13344555666555555555555544433 3222 3344444444444455544 788889998999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 614 YVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQ--R--MNQEAELLNRRDKMEKELQERTRTFEEKRE 689 (1222)
Q Consensus 614 ~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~q--k--reLE~~~~~r~EE~E~~L~EREk~FEeek~ 689 (1222)
.|++++++=+.--+.++.-.+-=+....+-|+.- .++++. - -++=..|.+---.-++-+.||...+-..+.
T Consensus 658 ~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q-----~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~ 732 (786)
T PF05483_consen 658 KYQKEIESKSISEEELLGEVEKAKLTADEAVKLQ-----EETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKK 732 (786)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999766555555554443333333322221 122221 0 123334444444455556666666666565
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000927 690 RVLNDIAHLKEVAEGEIQEIKSERDQL 716 (1222)
Q Consensus 690 ~EL~~In~lke~a~kE~Eev~~E~~rL 716 (1222)
+|-+... .+-.+.-|+-.++.+...|
T Consensus 733 KE~E~~s-~k~sLE~ELs~lk~el~sl 758 (786)
T PF05483_consen 733 KEQEQSS-HKASLELELSNLKNELSSL 758 (786)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhHHHHH
Confidence 5544333 4445555555555444433
No 136
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=55.24 E-value=4.4e+02 Score=31.63 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=15.4
Q ss_pred hhHHHHhhhhccchhHHHhhhhhHHHHHHHhh
Q 000927 200 TDANTLLGGIEGKSLEVEEKFHAAEAKLAEVN 231 (1222)
Q Consensus 200 aEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~ 231 (1222)
..+.....-++....+++.+|..|+..+..--
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555555443
No 137
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=55.11 E-value=4e+02 Score=33.14 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000927 436 LERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQI 513 (1222)
Q Consensus 436 l~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi 513 (1222)
+....+.++.++-.+..|-+.+...++.++|-.+.|.... ..-+.+|.+..+.........+.....|++|+..|
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq---~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ---DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455677777777777787888888888887777776443 44455555444444444444455555555555544
No 138
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=54.04 E-value=2.9e+02 Score=29.17 Aligned_cols=100 Identities=28% Similarity=0.257 Sum_probs=76.3
Q ss_pred HHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000927 279 WEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRS 358 (1222)
Q Consensus 279 weKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~ 358 (1222)
|+++-....+-|-..++--.-=+.||.--.+.|...+..++.+.+..+.++..+-..+..|..=-..|..=+-+++.+.+
T Consensus 1 de~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777776666666788877778888888888888888888888777777777777777777778888888
Q ss_pred hHHhhHHhHHHHHHHHhhHH
Q 000927 359 TVEMKEKRLLTIEEKLNARE 378 (1222)
Q Consensus 359 ~Le~KEkeLl~leEKL~aRE 378 (1222)
.-+.-.++|-..++++..=|
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887776544
No 139
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=53.94 E-value=2.7e+02 Score=36.17 Aligned_cols=83 Identities=16% Similarity=0.305 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 471 VKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQEL 550 (1222)
Q Consensus 471 L~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~ 550 (1222)
+.....+++.-...|..++.+++..+.++++.+.+++..+.++.++.+.|+--+ +..+..+..+..+.|...|.+-+.
T Consensus 506 ~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~--~~~~~~a~~ea~~~~~~a~~~~~~ 583 (771)
T TIGR01069 506 YGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERE--RNKKLELEKEAQEALKALKKEVES 583 (771)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666666666666666666666666666666666666554422 223334455556666666666555
Q ss_pred HHHHH
Q 000927 551 LLKEH 555 (1222)
Q Consensus 551 LlkEa 555 (1222)
+.++.
T Consensus 584 ~i~~l 588 (771)
T TIGR01069 584 IIREL 588 (771)
T ss_pred HHHHH
Confidence 55544
No 140
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=53.29 E-value=2.8e+02 Score=28.78 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=28.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 519 KLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEH 555 (1222)
Q Consensus 519 ~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEa 555 (1222)
.++.++.|-.+|+.|=..|-.-|.+||.....|=-++
T Consensus 78 ~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 3355788999999999999999999998876664433
No 141
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=52.54 E-value=1.7e+02 Score=39.27 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=8.4
Q ss_pred ceeeeccchhhhHHHHH
Q 000927 116 LLLIEKKEWTSKIEELR 132 (1222)
Q Consensus 116 LLLiEkKEwtSk~eel~ 132 (1222)
.|++|-=...+=++-|.
T Consensus 90 yIVMEY~~gGSL~~lL~ 106 (1021)
T PTZ00266 90 YILMEFCDAGDLSRNIQ 106 (1021)
T ss_pred EEEEeCCCCCcHHHHHH
Confidence 36666544444444443
No 142
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.25 E-value=7.5e+02 Score=33.40 Aligned_cols=218 Identities=18% Similarity=0.254 Sum_probs=109.4
Q ss_pred hhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHH---HHHHHH
Q 000927 274 EDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLA---ELVVKE 350 (1222)
Q Consensus 274 e~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rl~---~L~~kE 350 (1222)
+.+.+|.-++.+.=.-+.|.=-.++---|-|.|+-..| +.+|+.++-++|.--.-|-....++..+=. ..+.-+
T Consensus 293 keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesL---Q~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~q 369 (1243)
T KOG0971|consen 293 KEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESL---QQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQ 369 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHH
Confidence 45566776666554444444444443333333333332 445555555555444444333333322200 001000
Q ss_pred HHHHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhh
Q 000927 351 READCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEIS 430 (1222)
Q Consensus 351 ke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvel~ 430 (1222)
+-.++. -+.|=++-++.=--|+|-++-.+||+.++ |+.|+.|.+ ||...+ |.--..+.
T Consensus 370 --fkqlEq-qN~rLKdalVrLRDlsA~ek~d~qK~~ke----lE~k~sE~~-eL~r~k--------------E~Lsr~~d 427 (1243)
T KOG0971|consen 370 --FKQLEQ-QNARLKDALVRLRDLSASEKQDHQKLQKE----LEKKNSELE-ELRRQK--------------ERLSRELD 427 (1243)
T ss_pred --HHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHH----HHHHhhHHH-HHHHHH--------------HHHHHHHH
Confidence 000000 12233444555555777888888888654 445555543 222111 11122233
Q ss_pred hhHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 000927 431 HREEKLERREQALD------KKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIES 504 (1222)
Q Consensus 431 h~Eekl~krEqaLe------~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a 504 (1222)
.+|.+|+.-.-..| .-..-|.+|.-.|+.|.+.|.|-=.-|-+.+ +..-+.....++--..|--+|++...
T Consensus 428 ~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEale---e~~EQL~Esn~ele~DLreEld~~~g 504 (1243)
T KOG0971|consen 428 QAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALE---EMNEQLQESNRELELDLREELDMAKG 504 (1243)
T ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444443222222 2235577788888888888887777777766 55556666666666667777777766
Q ss_pred HHHHHHHHHHHHHhh
Q 000927 505 ENAQQELQIQEECQK 519 (1222)
Q Consensus 505 ~~e~q~~qi~ee~e~ 519 (1222)
.+-+=..++.-+++-
T Consensus 505 ~~kel~~r~~aaqet 519 (1243)
T KOG0971|consen 505 ARKELQKRVEAAQET 519 (1243)
T ss_pred HHHHHHHHHHHHHHH
Confidence 665555556655553
No 143
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=51.55 E-value=3.6e+02 Score=29.54 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=33.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 000927 425 QEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIES 504 (1222)
Q Consensus 425 rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a 504 (1222)
.+..+......+......++.+.+++.+....+..+-..|...........+.+......+..-+..+..+...+...+.
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~ 147 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRR 147 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444323333333333333333333333333334444444444
Q ss_pred HHHHH
Q 000927 505 ENAQQ 509 (1222)
Q Consensus 505 ~~e~q 509 (1222)
.+-.+
T Consensus 148 ~l~~~ 152 (302)
T PF10186_consen 148 QLIQE 152 (302)
T ss_pred HHHHH
Confidence 43333
No 144
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=51.35 E-value=6.1e+02 Score=33.31 Aligned_cols=59 Identities=29% Similarity=0.398 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhhHHHHHH
Q 000927 411 IEEEMRSKISALDQQEFEISHREEKLERREQALDK--KSDRVKEKENDLAARLKSVKEREK 469 (1222)
Q Consensus 411 ~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~--k~~~lkeKEkdl~~K~k~LKEkEk 469 (1222)
++++|.+|..++-+-|--+...-+.+.--|..|-. +++++-+.|-.|..+.++|---+.
T Consensus 96 lE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee 156 (916)
T KOG0249|consen 96 LENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEE 156 (916)
T ss_pred HHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34555555555555554444444444433333322 266777788888888777654333
No 145
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=51.23 E-value=3.2e+02 Score=32.32 Aligned_cols=155 Identities=22% Similarity=0.337 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH---HHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHH
Q 000927 379 RVEIQKLLDDQRAILDAKQQEFEL---ELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKEN 455 (1222)
Q Consensus 379 ~~eIQkLldeh~a~L~~Kk~eFEl---ElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEk 455 (1222)
+-|+.++|---++.|..--.+.-+ .|.+.++.++.-+.+--.-+.+-=.+|..-=+||+-||.-|+-++.-|-.+=+
T Consensus 204 ~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr 283 (384)
T KOG0972|consen 204 KLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFR 283 (384)
T ss_pred HHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666776666777665555554 45666777777777767778888888998899999999999999999999999
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHhhhhccHHHH------
Q 000927 456 DLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQ--QELQIQEECQKLKINEEEK------ 527 (1222)
Q Consensus 456 dl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~--q~~qi~ee~e~LkiteeER------ 527 (1222)
.+..-+..++++-+.+.-- .+.....|..=-.+++.+|.++|.-.+.+.+ =..+|.++.-+|+ +|+
T Consensus 284 ~a~~~lse~~e~y~q~~~g---v~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk---~et~~mnv~ 357 (384)
T KOG0972|consen 284 RATDTLSELREKYKQASVG---VSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLK---EETQTMNVQ 357 (384)
T ss_pred HHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHH---HHHHhhhhh
Confidence 9999999999987766532 2444445555556666667666655444432 2456666655553 344
Q ss_pred ---HHHHHHHHHHHH
Q 000927 528 ---SELLRLQSQLKQ 539 (1222)
Q Consensus 528 ---~E~l~LqseLKe 539 (1222)
.+|..||+.|+.
T Consensus 358 igv~ehs~lq~~l~~ 372 (384)
T KOG0972|consen 358 IGVFEHSILQTYLRD 372 (384)
T ss_pred eehhhHHHHHHHHHH
Confidence 367888888876
No 146
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=51.14 E-value=5.7e+02 Score=31.67 Aligned_cols=134 Identities=20% Similarity=0.278 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH----------HH-HHHHHHHHHHhHHHHhHHHHHHHHHHHHHHH-----
Q 000927 556 EDLQQDREKFEKEWEVLDEKRDEINKEQEKI----------AD-EKKKLEKLQHSAEERLKKEECAMRDYVQREI----- 619 (1222)
Q Consensus 556 e~Lk~ekekFE~EWE~LDEKR~el~kE~~~I----------~e-Ere~lek~~~~E~erLK~Ek~~~r~~~krel----- 619 (1222)
.-|.++-.-.-.|-|.+|-|+.-++.|-.++ ++ |-|-+..++..+.--|++||..+--.|.++-
T Consensus 53 ~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~eee~lTn 132 (552)
T KOG2129|consen 53 SSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEVEEEFLTN 132 (552)
T ss_pred HHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhhhhhhhhccC
Confidence 3333333333344455555555555442221 22 3345566888888888888888877776654
Q ss_pred ------HHhhhcHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000927 620 ------EAIRLDKEAFEATMRHEQLVLS----EKAKNDRRKML---EEFEM---QRMNQEAELLNRRDKMEKELQERTRT 683 (1222)
Q Consensus 620 ------E~L~~ekEsF~~~M~hE~s~~~----ek~q~Erad~l---~d~E~---qkreLE~~~~~r~EE~E~~L~EREk~ 683 (1222)
..|+.++=.|....++|+--+- .||..--++-+ ..+|- .+-+|||-++..||-+=+.|--|.-.
T Consensus 133 ~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdk 212 (552)
T KOG2129|consen 133 PLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDK 212 (552)
T ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777763332 33322222211 12233 33468899999999999999999888
Q ss_pred HHHHHH
Q 000927 684 FEEKRE 689 (1222)
Q Consensus 684 FEeek~ 689 (1222)
++.++.
T Consensus 213 Le~ekr 218 (552)
T KOG2129|consen 213 LEQEKR 218 (552)
T ss_pred HHHHHH
Confidence 888875
No 147
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=50.33 E-value=6.1e+02 Score=31.78 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=34.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH
Q 000927 467 REKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENA 507 (1222)
Q Consensus 467 kEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e 507 (1222)
-++.|+....-|..-+++|+.-+.+-..|.+++.||++..-
T Consensus 388 ~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv 428 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYV 428 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHH
Confidence 46777777888888889999999999999999999988754
No 148
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=50.32 E-value=3.6e+02 Score=35.12 Aligned_cols=106 Identities=25% Similarity=0.230 Sum_probs=54.8
Q ss_pred hhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHHHHH
Q 000927 303 KANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERVEI 382 (1222)
Q Consensus 303 ~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eI 382 (1222)
++.+.-+.+-.-..-++.|+..+......+-..=.+|+..-..+-.+..++......++....+|....++|..+....+
T Consensus 489 ~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 568 (782)
T PRK00409 489 NAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL 568 (782)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444433333333333333333333344445555555555666666666666777777777
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHh
Q 000927 383 QKLLDDQRAILDAKQQEFELELEEKR 408 (1222)
Q Consensus 383 QkLldeh~a~L~~Kk~eFElElE~kR 408 (1222)
+++..+.+.+|..-+.+.+.=+...|
T Consensus 569 ~~~~~~a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 569 EEAEKEAQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666665555444443
No 149
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.44 E-value=9e+02 Score=33.48 Aligned_cols=151 Identities=19% Similarity=0.149 Sum_probs=95.0
Q ss_pred hhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHH----HHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhh
Q 000927 208 GIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESV----IKRERLSLVTEREAHEAAFYKQREDLREWEKKL 283 (1222)
Q Consensus 208 ~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~----LrRerlSf~~Erea~E~~~~~qRe~L~eweKkL 283 (1222)
.+++..-.+..|...++.....+++......-.+.+++-.... |-....+|.-+-++.-+.+.+-++-|-.|.+.+
T Consensus 416 Kleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~ 495 (1293)
T KOG0996|consen 416 KLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQV 495 (1293)
T ss_pred HHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3333444445555556666666666655555555554444443 444567777777788888888888888888888
Q ss_pred chhhhhhHHHHHhh---hhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 000927 284 QIGDERLSELRRTL---NQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTV 360 (1222)
Q Consensus 284 qe~eerL~~~qr~L---NqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~L 360 (1222)
.+....+--.+.-| -.|.+ .-.+.+++++++|......+++..+.|..-...|.....++......|
T Consensus 496 n~~~~e~~vaesel~~L~~~~~----------~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l 565 (1293)
T KOG0996|consen 496 NEARSELDVAESELDILLSRHE----------TGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKEL 565 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhH
Confidence 77666655554333 33333 445678889999998888888888777776666666555555555555
Q ss_pred HhhHHhHH
Q 000927 361 EMKEKRLL 368 (1222)
Q Consensus 361 e~KEkeLl 368 (1222)
...=++..
T Consensus 566 ~~~~~e~~ 573 (1293)
T KOG0996|consen 566 PKLRKEER 573 (1293)
T ss_pred HHHHHHHH
Confidence 54333333
No 150
>PF14992 TMCO5: TMCO5 family
Probab=48.99 E-value=4.5e+02 Score=30.76 Aligned_cols=93 Identities=20% Similarity=0.259 Sum_probs=46.0
Q ss_pred HHhhhHHhhHHhHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhh
Q 000927 355 CLRSTVEMKEKRLLT----IEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEIS 430 (1222)
Q Consensus 355 ~~~~~Le~KEkeLl~----leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvel~ 430 (1222)
++...|+.+++.|.+ |=-|+.++|. .||.| |-|+....-.+++. +-.-.-.+.+|.++.
T Consensus 4 sLn~dle~d~Q~ldE~Nq~lL~ki~~~E~-~iq~L---------------e~Eit~~~~~~~~~-e~e~~~~~~~e~~l~ 66 (280)
T PF14992_consen 4 SLNMDLEKDEQRLDEANQSLLQKIQEKEG-AIQSL---------------EREITKMDHIADRS-EEEDIISEERETDLQ 66 (280)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---------------HHHHHHHccccCch-hHHhhhhhchHHHHH
Confidence 455566666666543 2233444432 24444 44454444444333 111222366777776
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhH
Q 000927 431 HREEKLERREQALDKKSDRVKEKENDLAARLKSV 464 (1222)
Q Consensus 431 h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~L 464 (1222)
..|..-++-|..=+--+..+.+..+.++.+...+
T Consensus 67 ~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~ 100 (280)
T PF14992_consen 67 ELELETAKLEKENEHLSKSVQELQRKQDEQETNV 100 (280)
T ss_pred HHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCC
Confidence 6665555444444444444466666666665554
No 151
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=47.41 E-value=9e+02 Score=32.91 Aligned_cols=100 Identities=26% Similarity=0.257 Sum_probs=61.1
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHhhhhccHHHHHHH
Q 000927 455 NDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEID----QIESENAQQELQIQEECQKLKINEEEKSEL 530 (1222)
Q Consensus 455 kdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elE----K~~a~~e~q~~qi~ee~e~LkiteeER~E~ 530 (1222)
++.+.+.++++.-=+.++...+.|.....-+..-+++|.+.+.+.. ....++-+-..++.+-.++|.-+..+..
T Consensus 244 ~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~-- 321 (1072)
T KOG0979|consen 244 KKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVE-- 321 (1072)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3567778888887788888888888888888888888877554433 3334444444555555555544443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000927 531 LRLQSQLKQQIETYRHQQELLLKEHEDLQQD 561 (1222)
Q Consensus 531 l~LqseLKeEIe~~R~Qke~LlkEae~Lk~e 561 (1222)
+++...+.++.+.+..++.+...+..
T Consensus 322 -----~~~~~le~lk~~~~~rq~~i~~~~k~ 347 (1072)
T KOG0979|consen 322 -----EKKNKLESLKKAAEKRQKRIEKAKKM 347 (1072)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666655556555555543
No 152
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=47.22 E-value=2e+02 Score=30.81 Aligned_cols=77 Identities=30% Similarity=0.336 Sum_probs=21.8
Q ss_pred HhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHH
Q 000927 263 EAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEI 339 (1222)
Q Consensus 263 ea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi 339 (1222)
.+.+..+...|++|.+-.|.--+...+|...-..|...+..+.+....+...+.++..++.+|..-...|+++...+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577788888888888888888888888888888888887777777777777777777777666666665555443
No 153
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.04 E-value=2.7e+02 Score=30.29 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHH
Q 000927 492 LQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSEL 530 (1222)
Q Consensus 492 l~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~ 530 (1222)
...++..++++...++.-..+|...+..|...+..|.+-
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 334455555555555555555555555555555555443
No 154
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=46.86 E-value=4.3e+02 Score=29.35 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 000927 546 HQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERL 604 (1222)
Q Consensus 546 ~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erL 604 (1222)
.+...|.+|.+.|+......++-=..+....+.|+.....|..-+..+.-++..-.+.|
T Consensus 56 ~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 56 AEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444454455555555555666666655555555554444444
No 155
>PLN03188 kinesin-12 family protein; Provisional
Probab=46.58 E-value=4.6e+02 Score=36.22 Aligned_cols=26 Identities=23% Similarity=0.547 Sum_probs=22.9
Q ss_pred HHhHHHHHHhhhhhHHHHHHHHHHHH
Q 000927 157 EKREDNLRRALSMEKQCVADLEKALR 182 (1222)
Q Consensus 157 eKREEnLkKALgvEKqCVadLEKAL~ 182 (1222)
+-+-|.|+--|..||.|...|.-||+
T Consensus 1078 r~l~Ekl~~EL~~eK~c~eel~~a~q 1103 (1320)
T PLN03188 1078 RALAEKQKHELDTEKRCAEELKEAMQ 1103 (1320)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34567899999999999999999996
No 156
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=46.47 E-value=6.6 Score=49.20 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=13.1
Q ss_pred hcHHHHHHHHHHHHHhHhhhhhc
Q 000927 91 KDREALMEKVSKLEKELYDYQYN 113 (1222)
Q Consensus 91 kd~~aLia~iskLE~ElydYQyn 113 (1222)
..++-.|.+|..|+. ++||+
T Consensus 126 ~~ke~yI~~I~~Ld~---~~Q~~ 145 (713)
T PF05622_consen 126 ENKEEYIQRIMELDE---STQHA 145 (713)
T ss_dssp STHHHHHHHHHHS-H---HHHHH
T ss_pred ccHHHHHHHHHCCCH---HHHHH
Confidence 566778888888874 45555
No 157
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=46.43 E-value=4e+02 Score=28.57 Aligned_cols=78 Identities=19% Similarity=0.369 Sum_probs=38.9
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHhH
Q 000927 428 EISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELE-KQKLIADKESLQILKVEIDQIESE 505 (1222)
Q Consensus 428 el~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~e-k~~L~~dkEel~~lK~elEK~~a~ 505 (1222)
.+...|+.+....++|..+...|.+-.+-|..+++.+...-..|...+-+|-.+ ...-..+++-|..++.-+++.+..
T Consensus 79 ~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k~~ 157 (158)
T PF09744_consen 79 ELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQKDE 157 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444455555555555555555555555554444333333222222211 122235566677788888777654
No 158
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.37 E-value=2e+02 Score=30.01 Aligned_cols=17 Identities=29% Similarity=0.476 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000927 535 SQLKQQIETYRHQQELL 551 (1222)
Q Consensus 535 seLKeEIe~~R~Qke~L 551 (1222)
.+|++||..+......|
T Consensus 119 ~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 119 EELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 159
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=45.01 E-value=7.1e+02 Score=31.03 Aligned_cols=18 Identities=11% Similarity=0.407 Sum_probs=14.3
Q ss_pred HHHHHHHHhhhcHHHHHH
Q 000927 614 YVQREIEAIRLDKEAFEA 631 (1222)
Q Consensus 614 ~~krelE~L~~ekEsF~~ 631 (1222)
.+.+++|.|.+..-||++
T Consensus 246 km~kdle~Lq~aEqsl~d 263 (575)
T KOG4403|consen 246 KMMKDLEGLQRAEQSLED 263 (575)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788889888888875
No 160
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.97 E-value=3e+02 Score=29.89 Aligned_cols=42 Identities=31% Similarity=0.438 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHH
Q 000927 489 KESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELL 531 (1222)
Q Consensus 489 kEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l 531 (1222)
+..+..|+.+++.+...+..-...|..+...-..+ ++|..++
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l 109 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELL 109 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHH
Confidence 34455555555555555555555555554444444 5565554
No 161
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.24 E-value=2.3e+02 Score=33.57 Aligned_cols=52 Identities=27% Similarity=0.410 Sum_probs=34.1
Q ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000927 443 LDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKV 497 (1222)
Q Consensus 443 Le~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~ 497 (1222)
+..+-..|++.|++|-+|+.-||.- -.-+.++|+..+.+|..|.-.++.-|+
T Consensus 350 vkekE~elke~Ekel~~kf~~lkr~---h~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 350 VKEKEAELKEAEKELHEKFDRLKRL---HQEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556778888888888777753 223445677777788777766665544
No 162
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=44.18 E-value=8.5e+02 Score=31.70 Aligned_cols=89 Identities=26% Similarity=0.374 Sum_probs=49.0
Q ss_pred HHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhh----HHHH--HHHHHHHHHHH
Q 000927 318 LEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNA----RERV--EIQKLLDDQRA 391 (1222)
Q Consensus 318 LEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~a----RE~~--eIQkLldeh~a 391 (1222)
||..=++|.......+..|.++...|..|+.-|. .++..|.-.-++--.||-||.. |+++ -|+.| .-.=+
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er---~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L-EkrL~ 498 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNER---SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL-EKRLA 498 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4444455666667777788888888888888766 3444555444444455555543 3322 22221 11112
Q ss_pred HHHHhhhHHHHHHHHHhhh
Q 000927 392 ILDAKQQEFELELEEKRKS 410 (1222)
Q Consensus 392 ~L~~Kk~eFElElE~kRKs 410 (1222)
.....+..+|.+|...||.
T Consensus 499 eE~~~R~~lEkQL~eErk~ 517 (697)
T PF09726_consen 499 EERRQRASLEKQLQEERKA 517 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2333456677777666644
No 163
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=44.05 E-value=6e+02 Score=29.94 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=32.0
Q ss_pred hhcccccchhhHHHHhhhhccchhHHHhhhhhHHHHHHHhhccchH
Q 000927 191 TKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSE 236 (1222)
Q Consensus 191 iK~~sesKLaEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~ 236 (1222)
+....+.|...+..-..-+++..-++..+|.+|+..+..--+++.-
T Consensus 158 ~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 158 IDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444456666777777777778888888888888877776665543
No 164
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=43.98 E-value=3.1e+02 Score=34.84 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=26.4
Q ss_pred cccccchhhHHHHhhhhccchhHH----Hhhhhh----HHHHHHHhhcc
Q 000927 193 LFSEKTLTDANTLLGGIEGKSLEV----EEKFHA----AEAKLAEVNRK 233 (1222)
Q Consensus 193 ~~sesKLaEA~aLv~~~eeKslEv----E~Kl~a----AeaklAEa~Rk 233 (1222)
+-.+.||++-.-|.+++.--.-++ |.--|| |+++||-+-|-
T Consensus 248 vgpDrklaeeedlfdSahpeegDlDlasestAhaqsskadsllavvKRe 296 (940)
T KOG4661|consen 248 VGPDRKLAEEEDLFDSAHPEEGDLDLASESTAHAQSSKADSLLAVVKRE 296 (940)
T ss_pred cCcccchhhccccccccCCcccccccccccchhcccccchhhhhhhhcC
Confidence 445788888888888775444333 223344 67888877765
No 165
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=43.00 E-value=1.6e+02 Score=28.70 Aligned_cols=55 Identities=22% Similarity=0.410 Sum_probs=31.5
Q ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000927 512 QIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFE 566 (1222)
Q Consensus 512 qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE 566 (1222)
+|.++.+-+...+=|=.|+----..|.++++.+|+....|..|.+.||++...|.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444455666666777777777777777776666543
No 166
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=42.76 E-value=1.9e+02 Score=32.58 Aligned_cols=55 Identities=24% Similarity=0.358 Sum_probs=39.6
Q ss_pred HHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 000927 552 LKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQR 617 (1222)
Q Consensus 552 lkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kr 617 (1222)
.++.+.|+.+-++=..+-+-.+.+...+.|..+.+. .|.|||..+-..+|+++..
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~-----------~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ-----------DEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHHHhc
Confidence 344445555555555666667777777777777766 8999999999999998864
No 167
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=42.39 E-value=6.2e+02 Score=29.61 Aligned_cols=140 Identities=17% Similarity=0.245 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH
Q 000927 494 ILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLD 573 (1222)
Q Consensus 494 ~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LD 573 (1222)
.-..+++..++.-+++..-+.++.+.-..+..-.++|.|--++=+-+-...+.+...-+.|.--+|+|-.+..-|=+.+-
T Consensus 79 ~~q~~~e~~rv~~EE~Rkt~~~q~q~~~q~aqY~D~LaRkR~~~e~~~qr~~n~e~lk~QEes~~rqE~~Rr~Te~~i~~ 158 (276)
T PF12037_consen 79 QAQAEIERQRVEAEERRKTLQQQTQQKQQRAQYEDELARKRYQDELEQQRRRNEELLKMQEESVIRQEQMRRATEEQILA 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888888777777777777777766655444445555555556666677888888888777776
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 000927 574 EKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKN 646 (1222)
Q Consensus 574 EKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~ 646 (1222)
.+|..+..+++- +++ ++..++ ....+.-++.+-++.-+-++....++..+|.-|.+-|+.
T Consensus 159 ~r~~t~~~eaeL---~~e-------~~~~k~---~AEa~gra~~eReN~Di~l~~l~~ka~e~R~t~lesI~t 218 (276)
T PF12037_consen 159 QRRQTEEEEAEL---RRE-------TERAKA---EAEAEGRAKEERENEDINLEQLRLKAEEERETVLESINT 218 (276)
T ss_pred HHHHhHHHHHHH---HHH-------HHHHHH---HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444321 111 111111 112222233333333333455667777777777776654
No 168
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=41.87 E-value=5.1e+02 Score=28.44 Aligned_cols=124 Identities=18% Similarity=0.261 Sum_probs=82.2
Q ss_pred hHHHHHHHhc--cchhHHhhhhcHH-HHHHHHHHHHHhHhhhhhcccceeeeccchhhhHHHHHHhHHHH----HHHHHH
Q 000927 72 DDWRRFREAG--LLDEATMERKDRE-ALMEKVSKLEKELYDYQYNMGLLLIEKKEWTSKIEELRQSFEET----QEILKR 144 (1222)
Q Consensus 72 ~~w~r~~~~g--~lde~s~~rkd~~-aLia~iskLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~e~----~~~lKR 144 (1222)
.+|+||.... -++..--+--|+. .|--+|..++..|....-.+.-++-.++-..-+|+++...++.- ...|+.
T Consensus 2 ~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~ 81 (219)
T TIGR02977 2 GIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK 81 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4788888764 2233333346888 78889999999999999988888888888888888877655432 223331
Q ss_pred --hhhhhhhHHH---HHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhcccc
Q 000927 145 --EQSAHLIAFS---EAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSE 196 (1222)
Q Consensus 145 --EqaAhl~ALs---EaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~se 196 (1222)
|--| --||. .++..=..|...+.--+.-|..|..-|+.|+..+.++|..-.
T Consensus 82 G~EdLA-r~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 82 GREDLA-RAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11222 223334456666677777888888889988888888775544
No 169
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=41.43 E-value=71 Score=35.28 Aligned_cols=71 Identities=24% Similarity=0.456 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHH
Q 000927 685 EEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKER 764 (1222)
Q Consensus 685 Eeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~eRe~ 764 (1222)
+.+-.+++..+-+....+.++|.++..|.+.|+.||+.+..+|+....+..+--..| .-+|-+|..+...
T Consensus 33 e~~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~----------e~~r~~fekekqq 102 (228)
T PRK06800 33 EEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEI----------EAARQQFQKEQQE 102 (228)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 344455666666677777888888888888888888888887776665544433333 3345555555554
Q ss_pred H
Q 000927 765 F 765 (1222)
Q Consensus 765 f 765 (1222)
.
T Consensus 103 ~ 103 (228)
T PRK06800 103 T 103 (228)
T ss_pred H
Confidence 3
No 170
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=41.32 E-value=9.4e+02 Score=31.39 Aligned_cols=161 Identities=19% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000927 527 KSELLRLQSQLKQQIET----YRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEE 602 (1222)
Q Consensus 527 R~E~l~LqseLKeEIe~----~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~e 602 (1222)
|.+|+.-+..-+.+|.+ +..|++--++++.+|++++..+..-=+.|.+|-+++..-++.|. +.+.+++..-..
T Consensus 549 reeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~---~R~~~vl~~l~~ 625 (717)
T PF10168_consen 549 REEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLM---KRVDRVLQLLNS 625 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhc
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000927 603 RLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTR 682 (1222)
Q Consensus 603 rLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLE~~~~~r~EE~E~~L~EREk 682 (1222)
.+.. -......++.||+.++.+=..+.+.++. +-.|+...+.++-..-.-++.. ..|-..|++.=+..--.+-
T Consensus 626 ~~P~-LS~AEr~~~~EL~~~~~~l~~l~~si~~----lk~k~~~Q~~~i~~~~~~~~~s--~~L~~~Q~~~I~~iL~~~~ 698 (717)
T PF10168_consen 626 QLPV-LSEAEREFKKELERMKDQLQDLKASIEQ----LKKKLDYQQRQIESQKSPKKKS--IVLSESQKRTIKEILKQQG 698 (717)
T ss_pred cCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccccccCCC--ccCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhHH
Q 000927 683 TFEEKRERVLNDIAH 697 (1222)
Q Consensus 683 ~FEeek~~EL~~In~ 697 (1222)
.==.+.-+++++||.
T Consensus 699 ~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 699 EEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHH
No 171
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=41.32 E-value=1e+03 Score=31.95 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=54.4
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 619 IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELL---NRRDKMEKELQERTRTFEEKRERV 691 (1222)
Q Consensus 619 lE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLE~~~~---~r~EE~E~~L~EREk~FEeek~~E 691 (1222)
++.+..+..- ..+|-.+.....+.+.+|.+-++..|+-+.+++.+..+ +...+++-.|.+|-+.|.+...++
T Consensus 475 le~~~~~~~~-~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~ 549 (980)
T KOG0980|consen 475 LEELQRAAGR-AETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVARE 549 (980)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444332 34566778888889999999999999999888777665 466788888889998888888777
No 172
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.25 E-value=3.7e+02 Score=30.76 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=42.0
Q ss_pred hHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHh
Q 000927 307 NERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLN 375 (1222)
Q Consensus 307 ~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~ 375 (1222)
..+-+.++..+++.+.+.+..+...+++.-.=+..+-+....=|.++-.+++.|+.-++.+..+.+++.
T Consensus 49 far~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 49 FARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555666666666666555555544444434444444555566777777777777777777777665
No 173
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.03 E-value=6.4e+02 Score=29.36 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH
Q 000927 449 RVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENA 507 (1222)
Q Consensus 449 ~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e 507 (1222)
-+++.++.|..+-..|..+=+.|.+.-++++...+.|.+.+-+...+-+.+--..+...
T Consensus 152 ~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~ 210 (265)
T COG3883 152 QQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASAL 210 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444455555555555555555555555555555555555444444444333333333
No 174
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=41.00 E-value=5.7e+02 Score=28.76 Aligned_cols=112 Identities=14% Similarity=0.246 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 000927 537 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ 616 (1222)
Q Consensus 537 LKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~k 616 (1222)
+...++++..++.-..+..+ .=|.+|+..+-.++.-+..++. +....-.+ .++++. .=-++.+..-...++.|+
T Consensus 105 ~e~~~ek~~K~~~~~~k~~~---ksKk~Ye~~Cke~~~a~~~~~~-~~~~~~~k-e~~K~~-~Kl~K~~~~~~k~~~~Y~ 178 (240)
T cd07672 105 IELIMDAIHKQRAMQFKKTM---ESKKNYEQKCRDKDEAEQAVNR-NANLVNVK-QQEKLF-AKLAQSKQNAEDADRLYM 178 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh-ccCCCCHH-HHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 35567777666666666554 4566788777654443332221 11110000 111211 223556667778899999
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 617 REIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEF 655 (1222)
Q Consensus 617 relE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~ 655 (1222)
.-+..|..-+..|+..|. .--..|..+.-||-+|+++.
T Consensus 179 ~~v~~l~~~~~~w~~~~~-~~c~~fq~lEeeRi~f~k~~ 216 (240)
T cd07672 179 QNISVLDKIREDWQKEHV-KACEFFEKQECERINFFRNA 216 (240)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 55556667788888888764
No 175
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=40.67 E-value=3.2e+02 Score=25.79 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 000927 627 EAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKE 676 (1222)
Q Consensus 627 EsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLE~~~~~r~EE~E~~ 676 (1222)
+.+...+..+=..+...+...+..|+..|+-........|......++..
T Consensus 38 ~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~ 87 (127)
T smart00502 38 ADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQK 87 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444555555555555544444444444444444443
No 176
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=40.49 E-value=7.9e+02 Score=30.30 Aligned_cols=192 Identities=15% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhhcccccc-------------hhhHHHHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhH
Q 000927 174 VADLEKALRDMGEERAQTKLFSEKT-------------LTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMK 240 (1222)
Q Consensus 174 VadLEKAL~emr~E~AeiK~~sesK-------------LaEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRk 240 (1222)
|..|+.-+..||.-.-+++...+-| |.-|..=-.-++..+.++-.-+..|.-.||-.+--+..+.-.
T Consensus 73 Vfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr 152 (499)
T COG4372 73 VFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR 152 (499)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhHHHHHHHHhhhHhHHHhHH---HHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhh
Q 000927 241 LQELESRESVIKRERLSLVTEREAHE---AAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERD 317 (1222)
Q Consensus 241 L~evEaRE~~LrRerlSf~~Erea~E---~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~keke 317 (1222)
|..|-+.-..|--+.-|+-++..++. ..+..++.+|.-..++..+....|..-+.-+-+|++...-+.....+....
T Consensus 153 l~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~ 232 (499)
T COG4372 153 LKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQA 232 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHH
Q 000927 318 LEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEK 365 (1222)
Q Consensus 318 LEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEk 365 (1222)
.--.-++|+--....-.++++|-.|-..|---|-+.+-++......|+
T Consensus 233 i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 233 IQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 177
>PF15462 Barttin: Bartter syndrome, infantile, with sensorineural deafness (Barttin)
Probab=40.32 E-value=60 Score=35.82 Aligned_cols=133 Identities=26% Similarity=0.301 Sum_probs=80.4
Q ss_pred CCCCCCCCCCCCCcccccccccchh-hhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHhhcCCCCccCCccccccccCc
Q 000927 927 EYAPSVDGHSYMDSKVEDVAEDSQQ-SELRSGKRRPGRKRKSGVNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAHEDS 1005 (1222)
Q Consensus 927 ~~~~s~~d~s~~ds~~~~~~edsq~-s~~k~g~r~~grr~k~~v~RtrSvkavv~daK~~lges~~~~~~~~~~~~~~es 1005 (1222)
-|+-|.-|-|.|--|+....||.-+ ..+..|+.++| -+.+|-.-.+.+.+-|+.|-.|...+ +++
T Consensus 79 AYdQSLPdfshIQmKvmgysED~rplLap~~gq~q~~-~sdgg~g~p~~~qawveaavvvHRgs-------------de~ 144 (224)
T PF15462_consen 79 AYDQSLPDFSHIQMKVMGYSEDPRPLLAPEPGQPQPG-ASDGGEGGPRDAQAWVEAAVVVHRGS-------------DED 144 (224)
T ss_pred hhhcCCCchhhheeeeeeccCCCCcccCCCcCCCccc-cCCCCCCCCcchhhhhhheeeeecCC-------------ccc
Confidence 5778888888999899888888877 56677888875 33444445678899998888877766 455
Q ss_pred CCCccccccccccccccCCCCCCcccccccCCCCCCCCcCccccCCCcccccccccccCCCCCcccccccccc
Q 000927 1006 QGISSHTQEASNMAKKRRRPQTSKTTQSEKDGADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHK 1078 (1222)
Q Consensus 1006 ~g~ss~~~k~~~~~rKR~r~~~s~~~~se~d~~dSEg~SdSvt~gg~rrKRrq~vap~~qtpge~rYnLRr~k 1078 (1222)
+|.-+.+.-.++-..=.+-...-..-.-+-|.+-|||.|-.-+.-.|.- .-+|. |-|-.-||.|-|--
T Consensus 145 ege~~~tqs~p~p~~~pqg~APLASfqddlD~gSsegsSp~pSPp~~ee----p~~p~-~~p~a~r~~ld~f~ 212 (224)
T PF15462_consen 145 EGERSPTQSRPGPPACPQGPAPLASFQDDLDMGSSEGSSPNPSPPEGEE----PHPPP-QEPWACRCQLDRFH 212 (224)
T ss_pred cCccccccCCCCCCCCCCCCcccccchhhccccccCCCCCCCCCCcccC----CCCCC-CCcccccCCccccc
Confidence 6655554422222221222222221123344567888888433331222 22333 67777899887754
No 178
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.77 E-value=1.2e+03 Score=32.05 Aligned_cols=194 Identities=19% Similarity=0.226 Sum_probs=112.7
Q ss_pred HHHHHhhhhhhhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhh----hhhhcccccchhhHHHHhhhh------
Q 000927 140 EILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEER----AQTKLFSEKTLTDANTLLGGI------ 209 (1222)
Q Consensus 140 ~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~----AeiK~~sesKLaEA~aLv~~~------ 209 (1222)
..++|..++|- +.+...+=.+|.-.++-..+-|..||+-..+|.... ...--+-+.|+..+++.|.-.
T Consensus 242 ~~~~~~~~~~~--i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~ 319 (1174)
T KOG0933|consen 242 AEEKRKNSAHE--IEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNL 319 (1174)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667664 457777777777788888888888888887776521 111123344444444444333
Q ss_pred --------ccchhHHHhhhhhHHHH-------HHHh-------hccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHH
Q 000927 210 --------EGKSLEVEEKFHAAEAK-------LAEV-------NRKSSELEMKLQELESRESVIKRERLSLVTEREAHEA 267 (1222)
Q Consensus 210 --------eeKslEvE~Kl~aAeak-------lAEa-------~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~ 267 (1222)
++|+-++...+..-..+ .+.+ -+.++...--|...+--=..|.+=..|-..+--.++.
T Consensus 320 ~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ 399 (1174)
T KOG0933|consen 320 KKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLED 399 (1174)
T ss_pred HHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHH
Confidence 33332222222111111 1110 0001111001111111111222222233334446777
Q ss_pred HHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhh
Q 000927 268 AFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKER 335 (1222)
Q Consensus 268 ~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~k 335 (1222)
++..-+.++++....+.+..-+|--.+.-|-.++-...+.+.....-.++|+..+..+|..+..|+..
T Consensus 400 ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l 467 (1174)
T KOG0933|consen 400 QLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSL 467 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888889999998888888888888888999999888888888888888888888888877777543
No 179
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=39.65 E-value=1e+03 Score=31.40 Aligned_cols=142 Identities=19% Similarity=0.294 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Q 000927 529 ELLRLQSQLKQQIETYRHQQELLLK--EHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKK 606 (1222)
Q Consensus 529 E~l~LqseLKeEIe~~R~Qke~Llk--Eae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~ 606 (1222)
+|...|-.||++--........|.+ --|-||+-++..+.|-.++| -..+..+...++-.++.--+.-|.
T Consensus 879 d~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~e---------kdFv~kqqq~le~~lkrm~~~~k~ 949 (1187)
T KOG0579|consen 879 DMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKE---------KDFVMKQQQNLEAMLKRMAEKHKE 949 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777766555544444433 34678888888888876653 356667777777777766666677
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 000927 607 EECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERT 681 (1222)
Q Consensus 607 Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLE~~~~~r~EE~E~~L~ERE 681 (1222)
+..++..++-.+--.|-++||.-.= +-|-.-+.+|-|--+.+|-...=|||+.|-..-++..+.|++|-+.-.
T Consensus 950 ema~iErecLm~Kq~LlRarEaaiW--ElEe~qlqEkhqL~kqqlKDqYflqRhqlL~rHekE~eQmqrynQr~i 1022 (1187)
T KOG0579|consen 950 EMASIERECLMQKQNLLRAREAAIW--ELEEKQLQEKHQLHKQQLKDQYFLQRHQLLARHEKEMEQMQRYNQREI 1022 (1187)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666666666666777775443 344556788999999999999999999999999999999999977543
No 180
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=39.52 E-value=5.9e+02 Score=28.57 Aligned_cols=30 Identities=30% Similarity=0.570 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000927 536 QLKQQIETYRHQQELLLKEHEDLQQDREKFEKE 568 (1222)
Q Consensus 536 eLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~E 568 (1222)
.|..+++.+|+ +|..|......+...|+.|
T Consensus 135 ~l~~e~erL~a---eL~~er~~~e~q~~~Fe~E 164 (202)
T PF06818_consen 135 SLRREVERLRA---ELQRERQRREEQRSSFEQE 164 (202)
T ss_pred hHHHHHHHHHH---HHHHHHHhHHHHHHHHHHH
Confidence 35556666654 3455555555666677765
No 181
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=39.48 E-value=2.5e+02 Score=35.22 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000927 488 DKESLQILKVEIDQIESENAQQELQIQE 515 (1222)
Q Consensus 488 dkEel~~lK~elEK~~a~~e~q~~qi~e 515 (1222)
.=.+|...+.++++++.++.+.+.+|..
T Consensus 210 ~p~~i~~~~~e~d~lk~e~~~~~~~i~~ 237 (555)
T TIGR03545 210 NPLELQKIKEEFDKLKKEGKADKQKIKS 237 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666555555543
No 182
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.34 E-value=1e+03 Score=31.21 Aligned_cols=73 Identities=23% Similarity=0.248 Sum_probs=46.0
Q ss_pred hHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHH
Q 000927 260 TEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKERED 337 (1222)
Q Consensus 260 ~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~ked 337 (1222)
+...-.++.|..|+..|.+--++++..+.+|...-...-|+.+-+- -+ ...-+|+...+.+..-..-|.+.+-
T Consensus 186 s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~----ql-~~~~ele~i~~~~~dqlqel~~l~~ 258 (716)
T KOG4593|consen 186 SELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQ----QL-SLSEELEAINKNMKDQLQELEELER 258 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HH-HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678899999999998888888888887776655555544211 11 2233566666666655555544433
No 183
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=39.08 E-value=9.6e+02 Score=30.84 Aligned_cols=251 Identities=15% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHH------------HHHHHHHH
Q 000927 378 ERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLE------------RREQALDK 445 (1222)
Q Consensus 378 E~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~------------krEqaLe~ 445 (1222)
||+.--.=|.+..+.+.-|.++.-.++...++.-+..+.. +...|..|......+. ..|++|..
T Consensus 12 Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~----V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~ 87 (617)
T PF15070_consen 12 ERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISR----VQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQA 87 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcccCCccccccchHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHH
Q 000927 446 KSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEE 525 (1222)
Q Consensus 446 k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lkitee 525 (1222)
..+.|..--..|.+++.+.-+--..|...-...+.....|...-+.+..-..|..++++.+...+.-|.-+...=+
T Consensus 88 E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~---- 163 (617)
T PF15070_consen 88 EAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR---- 163 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 000927 526 EKSELLRLQSQLKQQIETYRHQQELLLKEH--------------EDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK 591 (1222)
Q Consensus 526 ER~E~l~LqseLKeEIe~~R~Qke~LlkEa--------------e~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre 591 (1222)
+||+++..+-.--..|..+- ..|...-...+-+|..+-++=+.-..|+..+..++.
T Consensus 164 ----------eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~d 233 (617)
T PF15070_consen 164 ----------ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRD 233 (617)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000927 592 KLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQ 662 (1222)
Q Consensus 592 ~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreL 662 (1222)
.+..++ .+|......|..+++..-.-+-. +.-+..++|.+-++-.-.+|+...+|
T Consensus 234 q~~~~L---------------qqy~a~~q~l~~e~e~L~~q~l~-Qtql~d~lq~eE~q~~~~~E~~~~EL 288 (617)
T PF15070_consen 234 QYLGHL---------------QQYVAAYQQLASEKEELHKQLLQ-QTQLMDRLQHEESQGKVQLEMAHQEL 288 (617)
T ss_pred HHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHH
No 184
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=38.79 E-value=8.5e+02 Score=30.15 Aligned_cols=160 Identities=25% Similarity=0.348 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhHHh-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHH
Q 000927 337 DEINSRLAELVVKEREADCLRSTVEMKEKR-LLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEM 415 (1222)
Q Consensus 337 ddi~~rl~~L~~kEke~~~~~~~Le~KEke-Ll~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel 415 (1222)
+.|..+|+.|...++. .++..|+.+-.+ +..+..++..+ +..-+. .....-+.+|+.+..+.++.++++|
T Consensus 261 ~~L~~~l~~l~~~~~~--~l~~~L~~q~~e~~~~~~~~~~~~----le~~~~---~~~~~~~~e~~~~~~~l~~~~~~~L 331 (582)
T PF09731_consen 261 DALQKELAELKEEEEE--ELERALEEQREELLSKLREELEQE----LEEKRA---ELEEELREEFEREREELEEKYEEEL 331 (582)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666655554 555666665444 44444443322 222222 2233445677777777777777777
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHH-HH-HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHH
Q 000927 416 RSKISALDQQEFEISHREEKLERREQALDKKSDRV-KE-KENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQ 493 (1222)
Q Consensus 416 ~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~l-ke-KEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~ 493 (1222)
+.....- .+.-..|....|....+.|.....+. ++ .+.+-.+++..|.+--..|...++-+...-. ....-..+.
T Consensus 332 ~~eL~~~--~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~-~~~~~~~~~ 408 (582)
T PF09731_consen 332 RQELKRQ--EEAHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARSE-AEDENRRAQ 408 (582)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 6644432 22223344444444444443333221 11 1223345555555555556666654443222 223333444
Q ss_pred HHHHHHHHHHhHHHH
Q 000927 494 ILKVEIDQIESENAQ 508 (1222)
Q Consensus 494 ~lK~elEK~~a~~e~ 508 (1222)
.|-.=|..++..+..
T Consensus 409 ~l~~a~~~l~~~l~~ 423 (582)
T PF09731_consen 409 QLWLAVDALKSALDS 423 (582)
T ss_pred HHHHHHHHHHHHHHc
Confidence 444444444444433
No 185
>PRK10869 recombination and repair protein; Provisional
Probab=37.55 E-value=9.2e+02 Score=30.21 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=47.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHH
Q 000927 689 ERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQ 757 (1222)
Q Consensus 689 ~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~ 757 (1222)
+.-|..|+.|+-.-..-+++|-.-+..++.|-..+.-....++.=..++.+-=++|..+..+|-..|..
T Consensus 302 e~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 302 EQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678888888888899999999999999988887766555554444444444455555555555544
No 186
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=37.43 E-value=4.3e+02 Score=29.73 Aligned_cols=154 Identities=24% Similarity=0.329 Sum_probs=89.1
Q ss_pred hhhhHHHHHHhHHHHHH-HHHHhhhhhhhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhcc-cccchhh
Q 000927 124 WTSKIEELRQSFEETQE-ILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLF-SEKTLTD 201 (1222)
Q Consensus 124 wtSk~eel~qa~~e~~~-~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~-sesKLaE 201 (1222)
|.-|.++|++||+.-+. +-|||| +|+.--+.||+-|..||.--.+...+ +.+.--.
T Consensus 1 Yvekv~~LQ~AL~~LQaa~ekRE~----------------------lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~ 58 (205)
T PF12240_consen 1 YVEKVERLQQALAQLQAACEKREQ----------------------LERRLRTRLERELESLRAQQRQGNSSGSSSPSNN 58 (205)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Confidence 35688999999998876 334444 35556688999999998876654322 1111133
Q ss_pred HHHHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHH--------HHHHH-hhhHhHHHhHHHHHHHh
Q 000927 202 ANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESV--------IKRER-LSLVTEREAHEAAFYKQ 272 (1222)
Q Consensus 202 A~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~--------LrRer-lSf~~Erea~E~~~~~q 272 (1222)
|..|... +-|-|.++.+.+|-.+--..|+ |.+.--|+-+ -+|.. +.-.+.+..+..-| +.
T Consensus 59 ~~~L~~~----LrEkEErILaLEad~~kWEqkY------LEEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~-r~ 127 (205)
T PF12240_consen 59 ASNLKEL----LREKEERILALEADMTKWEQKY------LEESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSL-RE 127 (205)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccc-cc
Confidence 5555554 5556888888887776665554 2222222222 22333 33334455543333 44
Q ss_pred HhhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhh
Q 000927 273 REDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERD 317 (1222)
Q Consensus 273 Re~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~keke 317 (1222)
-++|---.++.++.+.||-.+-. .|.|.|..++..++.
T Consensus 128 ~eel~~a~~K~qemE~RIK~Lha-------qI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 128 EEELHMANRKCQEMENRIKALHA-------QIAEKDAMIKVLQQR 165 (205)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHhh
Confidence 45565666777777777655543 445555566555543
No 187
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=37.37 E-value=1.3e+03 Score=31.70 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=21.5
Q ss_pred hHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHH
Q 000927 726 NREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERF 765 (1222)
Q Consensus 726 ~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~eRe~f 765 (1222)
.++.++.+-..++..+.+...-+.+.+..+.+....|+-+
T Consensus 372 ~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~l~~~kr~~~ 411 (1072)
T KOG0979|consen 372 MKEVLQKKSSKLRDSRQEIDAEQLKSQKLRDLENKKRKLK 411 (1072)
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555443
No 188
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=37.23 E-value=5.2e+02 Score=27.18 Aligned_cols=6 Identities=33% Similarity=0.750 Sum_probs=2.1
Q ss_pred HHHHHH
Q 000927 537 LKQQIE 542 (1222)
Q Consensus 537 LKeEIe 542 (1222)
+..++.
T Consensus 107 ~~~~l~ 112 (191)
T PF04156_consen 107 LESELE 112 (191)
T ss_pred HHHHHH
Confidence 333333
No 189
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=36.88 E-value=6e+02 Score=27.88 Aligned_cols=84 Identities=14% Similarity=0.248 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhhhhhhhcccccchhhHHHHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHH
Q 000927 176 DLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRER 255 (1222)
Q Consensus 176 dLEKAL~emr~E~AeiK~~sesKLaEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRer 255 (1222)
.=|+|+.+|..=|-.| ...=.+||.++.+...+.-.+....+-.++++...+..+---|+..+.--..|++..
T Consensus 6 ~He~af~~iK~YYndI-------T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L 78 (201)
T PF13851_consen 6 NHEKAFQEIKNYYNDI-------TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQL 78 (201)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3478888887766554 234567888888888888888888888888888888888888888888888888887
Q ss_pred hhhHhHHHhHH
Q 000927 256 LSLVTEREAHE 266 (1222)
Q Consensus 256 lSf~~Erea~E 266 (1222)
-.|..+.-++.
T Consensus 79 ~~y~kdK~~L~ 89 (201)
T PF13851_consen 79 KNYEKDKQSLQ 89 (201)
T ss_pred HHHHHHHHHHH
Confidence 77766665443
No 190
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=36.81 E-value=6.2e+02 Score=27.97 Aligned_cols=118 Identities=21% Similarity=0.373 Sum_probs=0.0
Q ss_pred CCCCCcccccccCCCCcccCCCCchhHHHHHHHhc----------cchhHHhhhhcHHHHHHHHHHHHHhHhhhhhcccc
Q 000927 47 PPPPPVNSLLDYNSGSATVFPAESEDDWRRFREAG----------LLDEATMERKDREALMEKVSKLEKELYDYQYNMGL 116 (1222)
Q Consensus 47 ~~~~p~~~l~~~~g~~~~~~~~~~~~~w~r~~~~g----------~lde~s~~rkd~~aLia~iskLE~ElydYQynMGL 116 (1222)
.|+||.|+. .|.+.|+..-.-. +..=+-|..-...+-.-+..-||..+..+|
T Consensus 88 l~~p~~~~~-------------~d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le----- 149 (221)
T PF05700_consen 88 LPPPPSGKS-------------NDVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLE----- 149 (221)
T ss_pred CCCCCCCCc-------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----
Q ss_pred eeeeccchhhhHHHHHHhHHHHHHHHHHhhhhhhhHHHHHHHh-HHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 000927 117 LLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKR-EDNLRRALSMEKQCVADLEKALRDMGEERAQTK 192 (1222)
Q Consensus 117 LLiEkKEwtSk~eel~qa~~e~~~~lKREqaAhl~ALsEaeKR-EEnLkKALgvEKqCVadLEKAL~emr~E~AeiK 192 (1222)
.....+++.+++..-..|+.|...-.-|...+.+ .+-+.|-+.||..|+. ||.-+..++.+.++-+
T Consensus 150 ---------~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~-Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 150 ---------KELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEE-LEQEIEQLKRKAAELK 216 (221)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
No 191
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=36.79 E-value=4e+02 Score=26.09 Aligned_cols=58 Identities=22% Similarity=0.485 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 000927 530 LLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK 591 (1222)
Q Consensus 530 ~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre 591 (1222)
|..|+++.++=||++ .+|.-|+++||.+......|=..+-.-|..|..+...+..++-
T Consensus 6 leqLE~KIqqAvdtI----~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 6 FEKLEAKVQQAIDTI----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456788889888886 5677888888876666665555555555555555544444443
No 192
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=36.46 E-value=9.5e+02 Score=30.06 Aligned_cols=130 Identities=17% Similarity=0.230 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhH
Q 000927 410 SIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADK 489 (1222)
Q Consensus 410 s~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dk 489 (1222)
.+.+++..-.......++++...+..+....++...+.+.|..-+..|..-+++|-.+ . |+..-.++.
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~--i-------le~k~~~f~--- 131 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANR--I-------FEHSNRRVD--- 131 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-------HHHHHHHHH---
Confidence 3344555555555555555555566666555566666666666666666655554332 1 111111111
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000927 490 ESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQ 560 (1222)
Q Consensus 490 Eel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ 560 (1222)
..-+..|+.+..=+.+++..+....+.+ ...+..++ ..|+++|..+..+-..|..||.+|-.
T Consensus 132 ---~~~~~~l~~ll~Pl~e~l~~f~~~v~~~--~~~~~~~~----~~L~~qi~~L~~~n~~i~~ea~nLt~ 193 (475)
T PRK10361 132 ---EQNRQSLNSLLSPLREQLDGFRRQVQDS--FGKEAQER----HTLAHEIRNLQQLNAQMAQEAINLTR 193 (475)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122223344444444444444333322 12223333 56788888888888999999988854
No 193
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=36.32 E-value=7.4e+02 Score=29.29 Aligned_cols=93 Identities=28% Similarity=0.348 Sum_probs=52.6
Q ss_pred hHHhhhhhhHHHHHHhhhhHHHHHhhhhhhh--hhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhh
Q 000927 299 QREVKANENERILKQKERDLEELEKKIDLSS--SKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNA 376 (1222)
Q Consensus 299 qREe~~~E~~~~lk~kekeLEe~~kkie~~~--~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~a 376 (1222)
.|++.+.|+.+.-...++++|++...---.- ..||-.-..|..|-.--..+|.+ .|..-++.+-.|||++-.
T Consensus 345 kr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqkeee------klk~e~qkikeleek~~e 418 (445)
T KOG2891|consen 345 KREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKEEE------KLKAEEQKIKELEEKIKE 418 (445)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHHHHHH
Confidence 4555566666665566666665543221111 22233333344433322222222 233356667789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 000927 377 RERVEIQKLLDDQRAILDAKQ 397 (1222)
Q Consensus 377 RE~~eIQkLldeh~a~L~~Kk 397 (1222)
-|..-.+-|+.-|.+-|-...
T Consensus 419 eedal~~all~~qeirl~~~l 439 (445)
T KOG2891|consen 419 EEDALLLALLNLQEIRLIAEL 439 (445)
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 999999988888887776543
No 194
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=36.02 E-value=6.5e+02 Score=27.98 Aligned_cols=191 Identities=20% Similarity=0.269 Sum_probs=104.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000927 484 KLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDRE 563 (1222)
Q Consensus 484 ~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~eke 563 (1222)
.-..+-.-+..++..|.++...|+.+.++-.+.... ||..+-+.|..+...-+-... .-..
T Consensus 28 Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~-------------lq~~~e~~i~~~~~~v~~~~~------~~~~ 88 (247)
T PF06705_consen 28 RREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKK-------------LQSKFEEQINNMQERVENQIS------EKQE 88 (247)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 334455567777777888887777777666544443 355555555554433222211 1223
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 000927 564 KFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEK 643 (1222)
Q Consensus 564 kFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek 643 (1222)
.|..=|..|..|=..|... |.+++..+...+..--..|..+..++...|..+--.-.-.-...+.+|...-..+..+
T Consensus 89 ~~~~~l~~L~~ri~~L~~~---i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~ 165 (247)
T PF06705_consen 89 QLQSRLDSLNDRIEALEEE---IQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEK 165 (247)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677776666543 4445554444444444456666666666666665554444455666666666667777
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000927 644 AKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQ 707 (1222)
Q Consensus 644 ~q~Erad~l~d~E~qkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~E 707 (1222)
+..|+..--..+.--+.+|+ ..+.-+.+.=+.=+.+-|+.|++++..+..|.+
T Consensus 166 i~~Ek~~Re~~~~~l~~~le-----------~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~ 218 (247)
T PF06705_consen 166 IEKEKNTRESKLSELRSELE-----------EVKRRREKGDEQFQNFVLEEIAALKNALALESQ 218 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666654444443333333 333333333333345567777777766665544
No 195
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=35.92 E-value=9.5e+02 Score=29.88 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=17.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 000927 602 ERLKKEECAMRDYVQREIEAIRLDKEAFEATMR 634 (1222)
Q Consensus 602 erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~ 634 (1222)
+.|..+...++..|..--..|+..|........
T Consensus 349 e~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~ 381 (563)
T TIGR00634 349 EALEEEVDKLEEELDKAAVALSLIRRKAAERLA 381 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555666666655544433
No 196
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=35.07 E-value=5.4e+02 Score=30.81 Aligned_cols=67 Identities=27% Similarity=0.394 Sum_probs=47.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHh
Q 000927 404 LEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKF 470 (1222)
Q Consensus 404 lE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEks 470 (1222)
|.+-++++...+..-..-+.+--.+|..-=++|..||.-|+.+++-+-..=.....+++.++++=+.
T Consensus 225 m~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~ 291 (359)
T PF10498_consen 225 MKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQ 291 (359)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666777777788888888899999999988887776655555555555544433
No 197
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.87 E-value=6.6e+02 Score=27.76 Aligned_cols=48 Identities=10% Similarity=0.119 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 607 EECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEF 655 (1222)
Q Consensus 607 Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~ 655 (1222)
.-...++.|+.-++.|..-+..|+..|.. =...|..+..+|-+|+.++
T Consensus 168 ~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~-~~~~~Q~lEe~Ri~~lk~~ 215 (239)
T cd07647 168 SAEEADSAYKSSIGCLEDARVEWESEHAT-ACQVFQNMEEERIKFLRNA 215 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34457889999999999999999999985 3444455666777777654
No 198
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=34.85 E-value=47 Score=42.89 Aligned_cols=15 Identities=47% Similarity=0.459 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 000927 662 QEAELLNRRDKMEKE 676 (1222)
Q Consensus 662 LE~~~~~r~EE~E~~ 676 (1222)
+-++-++||++.|+.
T Consensus 992 a~~en~krRee~Ek~ 1006 (1102)
T KOG1924|consen 992 AVAENEKRREEEEKE 1006 (1102)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556666665543
No 199
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.58 E-value=8.2e+02 Score=30.83 Aligned_cols=102 Identities=24% Similarity=0.298 Sum_probs=48.8
Q ss_pred HHHHHHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh
Q 000927 349 KEREADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFE 428 (1222)
Q Consensus 349 kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEve 428 (1222)
..+++..-+.-|+.-..++-+|+ |.-+-=-.- |+..|.+..+|.=...|--+ |.+-+..+=.-
T Consensus 346 Q~q~~~~~r~ri~~i~e~v~eLq-k~~ad~~~K----------I~~~k~r~~~Ls~RiLRv~i------kqeilr~~G~~ 408 (508)
T KOG3091|consen 346 QDQEVKQHRIRINAIGERVTELQ-KHHADAVAK----------IEEAKNRHVELSHRILRVMI------KQEILRKRGYA 408 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHH----------HHHHHHHHHHHHHHHHHHHH------HHHHHhccCCc
Confidence 44445555555555555555544 433322222 23334444444433333222 22333333344
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhH
Q 000927 429 ISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFV 471 (1222)
Q Consensus 429 l~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL 471 (1222)
|.--|++|...=+.|-.++..- +.|-+++..|.+..++.
T Consensus 409 L~~~EE~Lr~Kldtll~~ln~P----nq~k~Rl~~L~e~~r~q 447 (508)
T KOG3091|consen 409 LTPDEEELRAKLDTLLAQLNAP----NQLKARLDELYEILRMQ 447 (508)
T ss_pred CCccHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHhh
Confidence 5555666655555555555444 66677777777766655
No 200
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.41 E-value=3e+02 Score=30.49 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=40.7
Q ss_pred hhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHH
Q 000927 288 ERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSR 342 (1222)
Q Consensus 288 erL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~r 342 (1222)
++..+.|..+++++..+++-.....+..++|+.++.+++.....+....+++..+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777877777777888888888888888777776666665443
No 201
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=34.14 E-value=3.8e+02 Score=31.51 Aligned_cols=100 Identities=21% Similarity=0.402 Sum_probs=81.1
Q ss_pred HhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhh-hhHHhhhhh------hHHHHHHhhhhHHHHHhhhhhhhhhhHhh
Q 000927 263 EAHEAAFYKQREDLREWEKKLQIGDERLSELRRTL-NQREVKANE------NERILKQKERDLEELEKKIDLSSSKLKER 335 (1222)
Q Consensus 263 ea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~L-NqREe~~~E------~~~~lk~kekeLEe~~kkie~~~~~Lk~k 335 (1222)
--+|-.|.+-|--|.|-+..||+.+-.+.+++.-| -.||+-|.| .--.||---+|.--++.-||.-++.|-++
T Consensus 64 QQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 64 QQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 35788899999999999999999999999998877 678887654 34456666678888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 000927 336 EDEINSRLAELVVKEREADCLRSTVEM 362 (1222)
Q Consensus 336 eddi~~rl~~L~~kEke~~~~~~~Le~ 362 (1222)
...|.+=+.+|++.=+.++++=...|+
T Consensus 144 DkGiQKYFvDINiQN~KLEsLLqsMEl 170 (305)
T PF15290_consen 144 DKGIQKYFVDINIQNKKLESLLQSMEL 170 (305)
T ss_pred hhhHHHHHhhhhhhHhHHHHHHHHHHH
Confidence 888999999999988877766555544
No 202
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=34.13 E-value=5.6e+02 Score=26.68 Aligned_cols=51 Identities=25% Similarity=0.233 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 000927 470 FVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKI 522 (1222)
Q Consensus 470 sL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lki 522 (1222)
.+...-+.|+..+.+|..+ ....++.+++-++.=|.++-.++..-+.+|+-
T Consensus 59 ~~~~~~~~l~~~~~kl~~E--~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~ 109 (136)
T PF04871_consen 59 ELASEVKELEAEKEKLKEE--ARKEAQSELDDLLVLLGDLEEKRKKYKERLKE 109 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333344444444444322 22445666666666677777777766666653
No 203
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=33.74 E-value=6.3e+02 Score=27.15 Aligned_cols=61 Identities=25% Similarity=0.300 Sum_probs=28.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 000927 600 AEERLKKEECAMRDYVQREIEAIRLDKEAF---EATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLN 668 (1222)
Q Consensus 600 E~erLK~Ek~~~r~~~krelE~L~~ekEsF---~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLE~~~~~ 668 (1222)
|.++|+.....+..+|.++-+.-+.....| .+....|+..|..++ ..++...+.|+..+.+
T Consensus 51 e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v--------~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 51 ELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQV--------EQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhh
Confidence 444555555555555555443322222211 233444444444333 3455556666655554
No 204
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=33.55 E-value=1.3e+03 Score=30.64 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhHHHHHHh---hhhhHHHHH----HHHHHHHHHhhhh
Q 000927 137 ETQEILKREQSAHLIAFSEAEKREDNLRRA---LSMEKQCVA----DLEKALRDMGEER 188 (1222)
Q Consensus 137 e~~~~lKREqaAhl~ALsEaeKREEnLkKA---LgvEKqCVa----dLEKAL~emr~E~ 188 (1222)
.+..|..--.-||.--|+|.+-|++-|-.. ..-|+|... -|-.||-+||=.|
T Consensus 414 ~v~~mv~~grk~~~~~~~e~~ar~~~l~~v~re~eeer~aalias~~l~ea~~~irlqy 472 (828)
T PF04094_consen 414 AVDAMVEVGRKAHQAHLAEIQAREETLDSVMRETEEERQAALIASSVLDEALGDIRLQY 472 (828)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 345677777788888899999998877532 223333211 1556777766544
No 205
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=32.80 E-value=7e+02 Score=27.39 Aligned_cols=128 Identities=14% Similarity=0.194 Sum_probs=0.0
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHH
Q 000927 461 LKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKL-KINEEEKSELLRLQSQLKQ 539 (1222)
Q Consensus 461 ~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~L-kiteeER~E~l~LqseLKe 539 (1222)
...|+.+-+.+....|.++..-..+++++... ...++|++...+.-..++...+.+. .++..+-.-+-.--.+...
T Consensus 88 ~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~---~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~ 164 (236)
T cd07651 88 EEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQ---EKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQS 164 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Q 000927 540 QIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY 614 (1222)
Q Consensus 540 EIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~ 614 (1222)
++...+..-.....+....+. .|+.+|..+ +..|+.-|++||.-=+..|..|
T Consensus 165 ~~~~~~~~Y~~~v~~~~~~~~---~~~~~~~~~--------------------~~~~Q~lEe~Ri~~lk~~l~~~ 216 (236)
T cd07651 165 SINSSRRDYQNAVKALRELNE---IWNREWKAA--------------------LDDFQDLEEERIQFLKSNCWTF 216 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHH
No 206
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=32.62 E-value=8.7e+02 Score=28.47 Aligned_cols=80 Identities=25% Similarity=0.287 Sum_probs=38.5
Q ss_pred HHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhh
Q 000927 237 LEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKER 316 (1222)
Q Consensus 237 ~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kek 316 (1222)
++-.|.+++.|-..|.-+---+.+|.++....+..||-..- +..-+.+.-|.....+.-|--++|- .|.|..-
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y---~q~s~Leddlsqt~aikeql~kyiR----eLEQaND 122 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFY---QQESQLEDDLSQTHAIKEQLRKYIR----ELEQAND 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcc
Confidence 34455666666666655555555666655555444442211 1122223445555555544444443 3444445
Q ss_pred hHHHHHh
Q 000927 317 DLEELEK 323 (1222)
Q Consensus 317 eLEe~~k 323 (1222)
+||-++.
T Consensus 123 dLErakR 129 (333)
T KOG1853|consen 123 DLERAKR 129 (333)
T ss_pred HHHHhhh
Confidence 5555444
No 207
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.56 E-value=5.5e+02 Score=28.52 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHhHHH
Q 000927 491 SLQILKVEIDQIESENA 507 (1222)
Q Consensus 491 el~~lK~elEK~~a~~e 507 (1222)
++..++.+++.+.+.+.
T Consensus 147 ~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 147 QLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444433333333
No 208
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.48 E-value=8e+02 Score=27.98 Aligned_cols=142 Identities=26% Similarity=0.304 Sum_probs=85.8
Q ss_pred cchhhHHHHhhhhccc--hhHHHhhhhhHHHHHHHhh---c-----cchHHHhHHHHhhhhHHHHHHHHhhhHh------
Q 000927 197 KTLTDANTLLGGIEGK--SLEVEEKFHAAEAKLAEVN---R-----KSSELEMKLQELESRESVIKRERLSLVT------ 260 (1222)
Q Consensus 197 sKLaEA~aLv~~~eeK--slEvE~Kl~aAeaklAEa~---R-----k~s~~eRkL~evEaRE~~LrRerlSf~~------ 260 (1222)
+|++.|.++= +=++| ..+++.+|--|+..+..+- | .++-..-||++-.+=-..|+++.-+..+
T Consensus 21 ~k~~~~~~~~-~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~~~~~~~~ 99 (220)
T KOG1666|consen 21 KKIGRALSLP-GSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKRELKRTTSRNLNAG 99 (220)
T ss_pred HhHHHHhcCC-chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 4455555444 22333 4444555555554444321 1 1344455555555444455554433331
Q ss_pred H----HHhHHHH----HHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhh
Q 000927 261 E----REAHEAA----FYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKL 332 (1222)
Q Consensus 261 E----rea~E~~----~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~L 332 (1222)
. .++..+. ..-||.-|-.=-..|...-+||.+++|+.+.=| ++=-+.=.+|-.-...|+.++..|
T Consensus 100 ~rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETE-------qIG~~IL~dL~~QRe~L~rar~rL 172 (220)
T KOG1666|consen 100 DRDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALETE-------QIGSEILEDLHGQREQLERARERL 172 (220)
T ss_pred hHHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1233333 678999999999999999999999999876544 444455567777778888899999
Q ss_pred HhhHHHHHHHHHHH
Q 000927 333 KEREDEINSRLAEL 346 (1222)
Q Consensus 333 k~keddi~~rl~~L 346 (1222)
.+-.+++..-..-|
T Consensus 173 ~~td~~lgkS~kiL 186 (220)
T KOG1666|consen 173 RETDANLGKSRKIL 186 (220)
T ss_pred HhchhhhhHHHHHH
Confidence 88888876554333
No 209
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=31.93 E-value=9e+02 Score=28.43 Aligned_cols=13 Identities=38% Similarity=0.343 Sum_probs=7.9
Q ss_pred HHHHHHhhhHHHH
Q 000927 390 RAILDAKQQEFEL 402 (1222)
Q Consensus 390 ~a~L~~Kk~eFEl 402 (1222)
.|.|.+|+-=+|=
T Consensus 125 ~aRl~ak~~WYeW 137 (312)
T smart00787 125 FARLEAKKMWYEW 137 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 4667777655554
No 210
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=31.60 E-value=1e+03 Score=31.57 Aligned_cols=86 Identities=19% Similarity=0.320 Sum_probs=47.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 571 VLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRK 650 (1222)
Q Consensus 571 ~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad 650 (1222)
+|--|.++|-|..+...+|..+|.+.++.=...|+. .+.+|.-+...|+++=++-+.+|++=+..| ...|...
T Consensus 452 ~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~----~kq~~d~e~~rik~ev~eal~~~k~~q~kL---e~sekEN 524 (861)
T PF15254_consen 452 LLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLE----NKQQFDIETTRIKIEVEEALVNVKSLQFKL---EASEKEN 524 (861)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHhhh
Confidence 344444555555555555555555544433333332 344566666777888888888887544333 3455666
Q ss_pred HHHHHHHhhhhHH
Q 000927 651 MLEEFEMQRMNQE 663 (1222)
Q Consensus 651 ~l~d~E~qkreLE 663 (1222)
++..|.++-|+-|
T Consensus 525 ~iL~itlrQrDaE 537 (861)
T PF15254_consen 525 QILGITLRQRDAE 537 (861)
T ss_pred hHhhhHHHHHHHH
Confidence 6666666555433
No 211
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=31.52 E-value=59 Score=42.05 Aligned_cols=32 Identities=22% Similarity=0.147 Sum_probs=13.6
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHH
Q 000927 455 NDLAARLKSVKEREKFVKAEEKKLELEKQKLI 486 (1222)
Q Consensus 455 kdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~ 486 (1222)
+.+-..++...+-+-..+|..=+...-++.++
T Consensus 873 ~kypd~l~F~ddl~hv~kaSrvnad~ikK~~~ 904 (1102)
T KOG1924|consen 873 EKYPDILKFPDDLEHVEKASRVNADEIKKNLQ 904 (1102)
T ss_pred HhChhhhcchhhHHHHHhhccccHHHHHHHHH
Confidence 33444444444444444444433333333333
No 212
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=29.91 E-value=53 Score=44.09 Aligned_cols=15 Identities=40% Similarity=0.857 Sum_probs=9.4
Q ss_pred hHHHhhhhhhhccCC
Q 000927 845 SWLRKCTSKIFSISP 859 (1222)
Q Consensus 845 SwlrKCtskIFk~SP 859 (1222)
+.++|||--|..++|
T Consensus 1489 ~Lir~~T~aii~ldp 1503 (3015)
T KOG0943|consen 1489 CLIRKCTAAIILLDP 1503 (3015)
T ss_pred HHHHHHhHHhhhccc
Confidence 455666666666666
No 213
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=29.52 E-value=9.2e+02 Score=27.74 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHH
Q 000927 534 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEIN 580 (1222)
Q Consensus 534 qseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~ 580 (1222)
+.-+..+...+..+...+.++...|..+...+..+...+...-..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~ 171 (423)
T TIGR01843 125 PELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALR 171 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555544444333333
No 214
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=29.31 E-value=2.7e+02 Score=31.66 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=13.1
Q ss_pred HHHhhccccchhhhhh
Q 000927 768 FVEKHTSCKNCGEMMR 783 (1222)
Q Consensus 768 ~vEklK~ckncge~~~ 783 (1222)
+-.++..|.-||-+++
T Consensus 186 ~~qkl~VCeVCGA~Ls 201 (254)
T PF03194_consen 186 QQQKLEVCEVCGAFLS 201 (254)
T ss_pred cccCccchhhhhhHHh
Confidence 4467899999997776
No 215
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=28.90 E-value=6.3e+02 Score=25.69 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000927 430 SHREEKLERREQALDKKSDRVKEKENDLA 458 (1222)
Q Consensus 430 ~h~Eekl~krEqaLe~k~~~lkeKEkdl~ 458 (1222)
...+..+..--..|+.+.....+-+..++
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE 48 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQKYE 48 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555544
No 216
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.47 E-value=1e+03 Score=27.85 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=91.7
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHH---------------HHHHHHHHHhhHHH---
Q 000927 405 EEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKE---------------KENDLAARLKSVKE--- 466 (1222)
Q Consensus 405 E~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lke---------------KEkdl~~K~k~LKE--- 466 (1222)
-.++.++++++..=-..+.+-+.+|...++-|.+|..-|.++.|.+-. ==.||-+|+.++..
T Consensus 65 ~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~ 144 (265)
T COG3883 65 QSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVD 144 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHH
Confidence 344455555555555566666666666666777777777766665421 11466667666643
Q ss_pred ----HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Q 000927 467 ----REKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIE 542 (1222)
Q Consensus 467 ----kEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe 542 (1222)
-=+..+..++.|+..+..+....+.|.-+..+++.....|+.++-...-..-.|+..+.. +..|+.
T Consensus 145 aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~----------~~~e~a 214 (265)
T COG3883 145 ADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEAS----------ALGEKA 214 (265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHH
Confidence 224456778888888888999999999999999999988888877665544444443332 222222
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 000927 543 TYRHQQELLLKEHEDLQQDRE 563 (1222)
Q Consensus 543 ~~R~Qke~LlkEae~Lk~eke 563 (1222)
-+-.|+..-.+.+...+.+-.
T Consensus 215 ~l~~qka~a~a~a~~~a~~~~ 235 (265)
T COG3883 215 ALEEQKALAEAAAAEAAKQEA 235 (265)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 222555555555555554433
No 217
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=27.87 E-value=9.3e+02 Score=29.85 Aligned_cols=66 Identities=23% Similarity=0.278 Sum_probs=43.6
Q ss_pred HhhhHhHHHhHHHHHHHhHhhHH----HHHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhh
Q 000927 255 RLSLVTEREAHEAAFYKQREDLR----EWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDL 327 (1222)
Q Consensus 255 rlSf~~Erea~E~~~~~qRe~L~----eweKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~ 327 (1222)
.-+...|..+..+.+.+-.+.|. -|.|.-...=+.+|+.|.-||.-|+-+. -.+.+|+.+......
T Consensus 252 Le~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~-------DL~dDL~ka~eTf~l 321 (426)
T smart00806 252 LETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIA-------DLKEDLEKAEETFDL 321 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34455566666666666555555 4666666666799999999999999665 555666655444433
No 218
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.73 E-value=6.5e+02 Score=29.41 Aligned_cols=88 Identities=18% Similarity=0.286 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 000927 433 EEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQ 512 (1222)
Q Consensus 433 Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~q 512 (1222)
...|..-...|..+--.|.++.++.+..+..+...-............+...+.....++...+.++++-++...-.+..
T Consensus 14 ~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P~L~~ 93 (344)
T PF12777_consen 14 EEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAEAEPALEE 93 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555444322221111222223334444555556666666666666665555555
Q ss_pred HHHHHhhh
Q 000927 513 IQEECQKL 520 (1222)
Q Consensus 513 i~ee~e~L 520 (1222)
...+-.+|
T Consensus 94 A~~al~~l 101 (344)
T PF12777_consen 94 AQEALKSL 101 (344)
T ss_dssp HHHHHHCS
T ss_pred HHHHHHhC
Confidence 55555544
No 219
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.59 E-value=5.7e+02 Score=24.77 Aligned_cols=65 Identities=28% Similarity=0.498 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHH
Q 000927 530 LLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEEC 609 (1222)
Q Consensus 530 ~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~ 609 (1222)
|-.|+.+.++-||++- +|.-|+++|| ||...|+.|.-.....|++|+ .|-+.||+|-.
T Consensus 6 ~ekLE~KiqqAvdTI~----LLQmEieELK--------------Eknn~l~~e~q~~q~~reaL~----~eneqlk~e~~ 63 (79)
T COG3074 6 FEKLEAKVQQAIDTIT----LLQMEIEELK--------------EKNNSLSQEVQNAQHQREALE----RENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHH--------------HHhhHhHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3467888999999874 4555666555 677778888888888888876 46677888877
Q ss_pred HHHHHHH
Q 000927 610 AMRDYVQ 616 (1222)
Q Consensus 610 ~~r~~~k 616 (1222)
+-++.+.
T Consensus 64 ~WQerlr 70 (79)
T COG3074 64 GWQERLR 70 (79)
T ss_pred HHHHHHH
Confidence 7666654
No 220
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.50 E-value=7.3e+02 Score=25.96 Aligned_cols=135 Identities=23% Similarity=0.353 Sum_probs=68.8
Q ss_pred hhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000927 315 ERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILD 394 (1222)
Q Consensus 315 ekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~ 394 (1222)
--+.+.+.-+.+.....+|..++.....-..|+.=-+....++..|+.-+..|.....++..-+. ...... .|.
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~-----~~~~~E-~l~ 79 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK-----RKSNAE-QLN 79 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHhHH-HHH
Confidence 34556666666666666666665544433333333333344444444445555555544444332 222222 889
Q ss_pred HhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 000927 395 AKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKS 463 (1222)
Q Consensus 395 ~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~ 463 (1222)
.|.+-+|-+|+.--+.|..= ..-+..-.+-..|.|-+|.. |+........|=-.+..|.+.
T Consensus 80 rriq~LEeele~ae~~L~e~----~ekl~e~d~~ae~~eRkv~~----le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKET----TEKLREADVKAEHFERKVKA----LEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHH
Confidence 99999999998766655322 22333344455566655543 333344444443444444443
No 221
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=27.49 E-value=1.7e+03 Score=30.20 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHH
Q 000927 529 ELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKE 582 (1222)
Q Consensus 529 E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE 582 (1222)
+..+.-..|-..|+.+-.+...+..=.++....-+.|+.|-..|+.+-++|+..
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444455555555555555555555555544
No 222
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=27.45 E-value=5.3e+02 Score=24.33 Aligned_cols=66 Identities=30% Similarity=0.411 Sum_probs=45.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Q 000927 499 IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDE 574 (1222)
Q Consensus 499 lEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDE 574 (1222)
+++..++=.++..++.+|=++ |+.-+.++-.-|.++|.+-..+.+.+..|+...+..+.+-+.|-+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGek----------LSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEK----------LSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555544444 444567778888999999999999999998888888877776654
No 223
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=27.42 E-value=7e+02 Score=25.71 Aligned_cols=25 Identities=16% Similarity=0.469 Sum_probs=10.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHH
Q 000927 572 LDEKRDEINKEQEKIADEKKKLEKL 596 (1222)
Q Consensus 572 LDEKR~el~kE~~~I~eEre~lek~ 596 (1222)
||+.+..|...+.....-++.+..+
T Consensus 36 l~~R~~~I~~~l~~A~~~~~ea~~~ 60 (141)
T PRK08476 36 MDNRNASIKNDLEKVKTNSSDVSEI 60 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333333333
No 224
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.22 E-value=1.3e+03 Score=28.76 Aligned_cols=75 Identities=21% Similarity=0.291 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHH
Q 000927 667 LNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDEL 744 (1222)
Q Consensus 667 ~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL 744 (1222)
++.++.++..|.++-..+.+--...++.|+-.++.+. +++-++++-.+=..+. +...|.+-..|..+-+.||+-+
T Consensus 113 dke~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k-~~~~l~~~~ekK~e~s--Le~eR~k~~~ql~~~~~~~e~~ 187 (438)
T COG4487 113 DKELELLEKELDELSKELQKQLQNTAEIIEKKRENNK-NEERLKFENEKKLEES--LELEREKFEEQLHEANLDLEFK 187 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHhHHHHHHH
Confidence 5667777777777777777766667777666665443 3333332221111111 4444444444544444444443
No 225
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=25.83 E-value=1.6e+03 Score=29.23 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHH
Q 000927 375 NARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKE 454 (1222)
Q Consensus 375 ~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKE 454 (1222)
..+|+..|+|.+..+-..|-. |-.|..++. +++..++..--.. .-+..|.|++..+++.++.-.
T Consensus 36 ~~~era~~ek~y~~~l~~l~~-k~~~q~~~~-------d~v~~~~~~q~~~--------~~~lq~~~~i~~r~e~l~~e~ 99 (640)
T KOG3565|consen 36 FLKERADKEKEYEEKLRSLCK-KFEFQSKSG-------DEVAESVSGQPLF--------SELLQRAQQIATRLEILKIED 99 (640)
T ss_pred HhcchhHHHHHHHHHHHHhhh-HhhcCCccc-------chHHHHhccCcch--------hHHHHHHHHHHHHHHHHHHHh
Confidence 348999999999999999887 556654443 3333322221110 124556677777777775444
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHH-HHHHHH
Q 000927 455 NDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEK-SELLRL 533 (1222)
Q Consensus 455 kdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER-~E~l~L 533 (1222)
..+-.=+.++.....-|.+..+.++....++.+. +.+.....+-+.+.-.++.-...-++.++. .++-++ .+..++
T Consensus 100 ~~v~~~~~~t~k~~~~l~~~~~~~~s~~~~~~~~-~~~~~~~ne~~~~~~~~~k~~~~~~ea~~~--~~k~d~~l~~s~~ 176 (640)
T KOG3565|consen 100 EEVKKSLEATLKTSLDLVAQRKQLESDLFQARNT-ELLKSTVNEHEDSYYQLEKRRKDQEEAEQF--FHKMDENLEGSRL 176 (640)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhH--HHHhhhhhhhhhh
Confidence 4444455566666677888889999988888885 777777778777777776666655555554 233222 344556
Q ss_pred HHHHHHHHHHHHHH
Q 000927 534 QSQLKQQIETYRHQ 547 (1222)
Q Consensus 534 qseLKeEIe~~R~Q 547 (1222)
..++..-++..++.
T Consensus 177 e~e~~~~~~~~~~~ 190 (640)
T KOG3565|consen 177 ELEKARKLALLREE 190 (640)
T ss_pred HHHHHHHHHHHHHH
Confidence 66665555555543
No 226
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=25.78 E-value=1.9e+03 Score=30.28 Aligned_cols=343 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhcccccchhhHHHHhhhhccchhHHHhhhhhHHHHH
Q 000927 148 AHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKL 227 (1222)
Q Consensus 148 Ahl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKLaEA~aLv~~~eeKslEvE~Kl~aAeakl 227 (1222)
..+-.+.+..+|-++|++.+.-=-+-...+.+.|..+.... ..+.+---+.+=.+.+..+.--..++..-+..+.+.+
T Consensus 55 ~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~--~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 55 NWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEP--RSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc--ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHhhccc-------hHHHhHHHHhhhhHHHH--------HHHHhhhHhHHHhHHHHHHHhHhhHH--------------H
Q 000927 228 AEVNRKS-------SELEMKLQELESRESVI--------KRERLSLVTEREAHEAAFYKQREDLR--------------E 278 (1222)
Q Consensus 228 AEa~Rk~-------s~~eRkL~evEaRE~~L--------rRerlSf~~Erea~E~~~~~qRe~L~--------------e 278 (1222)
.++.=.. +++-+.|+++..+-... .-.+..+.+|+.+++..+...+..|. .
T Consensus 133 ~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl 212 (1109)
T PRK10929 133 REISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSEL 212 (1109)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q ss_pred HHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHH----HHHHH
Q 000927 279 WEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVK----EREAD 354 (1222)
Q Consensus 279 weKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~k----Eke~~ 354 (1222)
-.+++++.+..+...|..+|++ |..+.+..+++-++..+.....-.. ...+-+..-.+..+|...|.+ =.+-.
T Consensus 213 ~~~~~~~l~~~~~~Lq~~in~k--R~~~se~~~~~~~~~~~~~~~~~~~-i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~ 289 (1109)
T PRK10929 213 AKKRSQQLDAYLQALRNQLNSQ--RQREAERALESTELLAEQSGDLPKS-IVAQFKINRELSQALNQQAQRMDLIASQQR 289 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHhhccCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhHHhhHHhHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhH
Q 000927 355 CLRSTVEMKEKRLLTIEEKLNA-RERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHRE 433 (1222)
Q Consensus 355 ~~~~~Le~KEkeLl~leEKL~a-RE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~E 433 (1222)
..++.++.--+-+..++|.++. +-+--+...|-.|...|=.-..- ..|...++++..+-.+++++=
T Consensus 290 ~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~LP~~~~~-------------~~l~~~IAdlRl~~f~~~q~~ 356 (1109)
T PRK10929 290 QAASQTLQVRQALNTLREQSQWLGVSNALGEALRAQVARLPEMPKP-------------QQLDTEMAQLRVQRLRYEDLL 356 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhCCCCccc-------------chhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHH
Q 000927 434 EKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQE 510 (1222)
Q Consensus 434 ekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~ 510 (1222)
+++..-.+........+..-++..-.. -|+.+.+-|...-+.+.....++-+=+-.-+.+..-+..++..+.++.
T Consensus 357 ~~l~~i~~~~~~~~~~~t~~~~~~l~~--ll~~rr~LL~~L~~~~~~~l~~l~~L~~~q~QL~~~~~~l~~~L~~~l 431 (1109)
T PRK10929 357 NKQPQLRQIRQADGQPLTAEQNRILDA--QLRTQRELLNSLLSGGDTLILELTKLKVANSQLEDALKEVNEATHRYL 431 (1109)
T ss_pred HHhhhhHHHHhhccCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 227
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=25.22 E-value=1.3e+03 Score=28.20 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000927 531 LRLQSQLKQQIETYRHQQELLLKEHEDLQQD 561 (1222)
Q Consensus 531 l~LqseLKeEIe~~R~Qke~LlkEae~Lk~e 561 (1222)
......+++|+..+|.....|....|+||.+
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777777777777777777766654
No 228
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.18 E-value=4.2e+02 Score=28.20 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000927 534 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEW 569 (1222)
Q Consensus 534 qseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EW 569 (1222)
..++++||+++..+-....+|++.||.|-+.+.+|.
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345677777777777778888999999998888875
No 229
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=25.09 E-value=1e+03 Score=26.83 Aligned_cols=111 Identities=15% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 649 RKMLEEFEMQRMNQ--------EAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEK 720 (1222)
Q Consensus 649 ad~l~d~E~qkreL--------E~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr 720 (1222)
+++.+.|+.+.+.+ -.-|+++.|+.-+++..=++.|..+..+ ...+++....++.++.+-.
T Consensus 74 ~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~d~k~i~~~~K~y~~E~K~-----------~~~~l~K~~sel~Kl~KKs 142 (223)
T cd07605 74 VDTHKSIEASLEQVAKAFHGELILPLEKKLELDQKVINKFEKDYKKEYKQ-----------KREDLDKARSELKKLQKKS 142 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHhHHHHHHhhhhhcHHHHHHHHHHh--hHhHHHHHHHHHHHHHHHHhh
Q 000927 721 HEVKVNREKLQEQQLGMRKDIDELDILCRRL--YGDREQFKREKERFLEFVEKH 772 (1222)
Q Consensus 721 ~Ei~~~ke~le~q~~em~kdIeeL~~ls~KL--k~qRE~~~~eRe~fl~~vEkl 772 (1222)
+-- ++.+........-.+|...-..-+.+ .-.|+.+.-||.+|.-||+.+
T Consensus 143 ~~~--~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv~~~ 194 (223)
T cd07605 143 QKS--GTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALLEERRRYCFLVDKH 194 (223)
T ss_pred ccc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 230
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=24.97 E-value=1.8e+03 Score=29.77 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=42.1
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 000927 460 RLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQ 512 (1222)
Q Consensus 460 K~k~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~q 512 (1222)
...-++.++-.+-+-.+....+++-+++-+.-|.+.|.++|++.+.-+++..+
T Consensus 541 r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~re~Eea~ 593 (988)
T KOG2072|consen 541 RNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQ 593 (988)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33445566677777788888889999999999999999999998888777665
No 231
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=24.95 E-value=9.8e+02 Score=26.59 Aligned_cols=157 Identities=23% Similarity=0.315 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHH
Q 000927 530 LLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEEC 609 (1222)
Q Consensus 530 ~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~ 609 (1222)
+..+...|+.++..=|...+.... .++..-.+.++--+.--.+|.+..+-+.. .|+.-+.+-.+++.+...
T Consensus 14 ~~~f~~~le~e~~~Rr~~ee~r~~---~i~e~i~~Le~~l~~E~k~R~E~~~~lq~------~~e~~i~~~~~~v~~~~~ 84 (247)
T PF06705_consen 14 FSGFESDLENEKRQRREQEEQRFQ---DIKEQIQKLEKALEAEVKRRVESNKKLQS------KFEEQINNMQERVENQIS 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 455667777777766666555544 34445555555554444555554444433 344445555566666666
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 610 AMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRE 689 (1222)
Q Consensus 610 ~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~E~qkreLE~~~~~r~EE~E~~L~EREk~FEeek~ 689 (1222)
...+.++.-+++|...=.... ..++.++.+...+|+-....|...|..=.+.++.+-..|..-=..=..
T Consensus 85 ~~~~~~~~~l~~L~~ri~~L~-----------~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~k 153 (247)
T PF06705_consen 85 EKQEQLQSRLDSLNDRIEALE-----------EEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILK 153 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666554444444 444555555555666666666666666666666665555443333333
Q ss_pred HHHhhhHHHHHHHHHHH
Q 000927 690 RVLNDIAHLKEVAEGEI 706 (1222)
Q Consensus 690 ~EL~~In~lke~a~kE~ 706 (1222)
+--+.++++.+.+..|.
T Consensus 154 rl~e~~~~l~~~i~~Ek 170 (247)
T PF06705_consen 154 RLEEEENRLQEKIEKEK 170 (247)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 232
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=24.76 E-value=6.6e+02 Score=24.50 Aligned_cols=88 Identities=19% Similarity=0.271 Sum_probs=37.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcH----HHHHHHHHHHHHHHHHHHHH
Q 000927 571 VLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDK----EAFEATMRHEQLVLSEKAKN 646 (1222)
Q Consensus 571 ~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ek----EsF~~~M~hE~s~~~ek~q~ 646 (1222)
.||+++..+..........+.........=...|..=+......+..-.......+ ........+........|..
T Consensus 27 ~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~ 106 (132)
T PF00430_consen 27 FLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQ 106 (132)
T ss_dssp HCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666665555544444444333332222222222111111 22333333444445555555
Q ss_pred HHHHHHHHHHHh
Q 000927 647 DRRKMLEEFEMQ 658 (1222)
Q Consensus 647 Erad~l~d~E~q 658 (1222)
++.+++.++..+
T Consensus 107 e~~~a~~~l~~~ 118 (132)
T PF00430_consen 107 EKEKAKKELRQE 118 (132)
T ss_dssp HHHHHHHHHT--
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 233
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=24.29 E-value=3.9e+02 Score=29.91 Aligned_cols=51 Identities=27% Similarity=0.495 Sum_probs=34.6
Q ss_pred HHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhh
Q 000927 722 EVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKH 772 (1222)
Q Consensus 722 Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~eRe~fl~~vEkl 772 (1222)
++..+.+.|..+|..+++-...|..-.++|...|.+|-+||+.|...+...
T Consensus 35 ~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~ 85 (228)
T PRK06800 35 EIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQ 85 (228)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777777777777777777777777777776655443
No 234
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.24 E-value=1.9e+03 Score=29.63 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000927 524 EEEKSELLRLQSQLKQQIETYR 545 (1222)
Q Consensus 524 eeER~E~l~LqseLKeEIe~~R 545 (1222)
+.|..++++|-..-++-|.-|+
T Consensus 910 kqeqee~~v~~~~~~~~i~alk 931 (970)
T KOG0946|consen 910 KQEQEELLVLLADQKEKIQALK 931 (970)
T ss_pred hhhHHHHHHHHhhHHHHHHHHH
Confidence 4455566666655555555544
No 235
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=24.15 E-value=9.8e+02 Score=28.43 Aligned_cols=101 Identities=19% Similarity=0.273 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHhHH--------HHHHhhhhhcH
Q 000927 671 DKMEKELQERTRTFEEKRERVLNDIAHLKEV-AEGEIQEIKSERDQLEKEKHEVKVNREKL--------QEQQLGMRKDI 741 (1222)
Q Consensus 671 EE~E~~L~EREk~FEeek~~EL~~In~lke~-a~kE~Eev~~E~~rLekEr~Ei~~~ke~l--------e~q~~em~kdI 741 (1222)
|||+.....=..+|.+- ...=.=||| +-.||.+|+.|--.|=..|+.-+..-++| +.|++|||.||
T Consensus 178 ee~d~S~k~ik~~F~~l-----~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadI 252 (302)
T PF07139_consen 178 EEMDSSIKKIKQTFAEL-----QSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADI 252 (302)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 45555555555556432 222222333 35677777777777766676666555554 67889999999
Q ss_pred HHHHHHHHHhhH--hHHHHHHHHHHHHHHHHhhccccchhhhh
Q 000927 742 DELDILCRRLYG--DREQFKREKERFLEFVEKHTSCKNCGEMM 782 (1222)
Q Consensus 742 eeL~~ls~KLk~--qRE~~~~eRe~fl~~vEklK~ckncge~~ 782 (1222)
--.+.-|+-=++ +=-.|.+|.+-++..| .+||+|.
T Consensus 253 K~fvs~rk~de~lg~~~rf~~d~~~l~~~i------~~~g~v~ 289 (302)
T PF07139_consen 253 KHFVSERKYDEELGRAARFTCDPEQLKKSI------MSFGEVS 289 (302)
T ss_pred HHHhhhhhhHHHHhHhhhcccCHHHHHHHH------HhcCccc
Confidence 777766543222 1123444444444433 4566543
No 236
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=23.80 E-value=1.7e+03 Score=28.95 Aligned_cols=207 Identities=18% Similarity=0.244 Sum_probs=106.4
Q ss_pred HHHHHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHH-HHHHHhhhhhh
Q 000927 350 EREADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRS-KISALDQQEFE 428 (1222)
Q Consensus 350 Eke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~-K~~~~e~rEve 428 (1222)
+.+...++..|+..+.+|..+..+ ++.|++|- -+.++.+..++..=+-.-+..+. .-..|-.++..
T Consensus 120 ~~e~~~lk~~lee~~~el~~~k~q-----q~~v~~l~--------e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~ 186 (629)
T KOG0963|consen 120 SEENEELKEELEEVNNELADLKTQ-----QVTVRNLK--------ERLRKLEQLLEIFIENAANETEEKLEQEWAEREAG 186 (629)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhh-----HHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666677776666655433 34444442 22233333333322222222221 22566677777
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH-HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH
Q 000927 429 ISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKER-EKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENA 507 (1222)
Q Consensus 429 l~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEk-EksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e 507 (1222)
+..++..+.++-..|+++...+...-.+-...+..++-. ++-.-+.--++.+.-..|.....-|.-+..+++-++
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~---- 262 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLR---- 262 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 777777777777777777777766666666666666666 444444443455555555555555555555554444
Q ss_pred HHHHHHHHHHhhhhccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH
Q 000927 508 QQELQIQEECQKLKINEEEKSELL--RLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLD 573 (1222)
Q Consensus 508 ~q~~qi~ee~e~LkiteeER~E~l--~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LD 573 (1222)
.|.....+.+..=++..-+-..+. .+.++..+=...|-+-+..+.+|.+..+.+....|++-...+
T Consensus 263 ~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~ 330 (629)
T KOG0963|consen 263 EQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKI 330 (629)
T ss_pred HHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333333333322211 122222222222333445677777777777777777654443
No 237
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=23.73 E-value=7.1e+02 Score=24.48 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 000927 539 QQIETYRHQQELLLKEHE 556 (1222)
Q Consensus 539 eEIe~~R~Qke~LlkEae 556 (1222)
.+|+.++.....+...+.
T Consensus 88 ~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 88 AELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444433333333
No 238
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.70 E-value=5.4e+02 Score=32.51 Aligned_cols=93 Identities=23% Similarity=0.350 Sum_probs=55.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Q 000927 463 SVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIE 542 (1222)
Q Consensus 463 ~LKEkEksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe 542 (1222)
..++-++.++..+.........|- .++++..+|..++++...-=.--..|. .-..++-.|+.+.+...+
T Consensus 165 ~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~~ik~p~~i~----------~~~~e~d~lk~e~~~~~~ 233 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKKDIKNPLELQ----------KIKEEFDKLKKEGKADKQ 233 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 344455555555555555566665 467777777777776652111111111 112355667777777777
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 000927 543 TYRHQQELLLKEHEDLQQDREKFE 566 (1222)
Q Consensus 543 ~~R~Qke~LlkEae~Lk~ekekFE 566 (1222)
.++.=+..|..+.+.++++-..++
T Consensus 234 ~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 234 KIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 777777777777777777665554
No 239
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=23.41 E-value=47 Score=36.89 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccc
Q 000927 171 KQCVADLEKALRDMGEERAQTKLFSE 196 (1222)
Q Consensus 171 KqCVadLEKAL~emr~E~AeiK~~se 196 (1222)
++-|-++.+-++.+++-....=.|-+
T Consensus 146 ~~~ve~~kk~~~~~~e~l~d~~~tL~ 171 (223)
T KOG0570|consen 146 SDIVEDFKKHLRQVREVLDDQFQTLR 171 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566777777777765544434444
No 240
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.16 E-value=1.5e+03 Score=29.13 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhHH
Q 000927 336 EDEINSRLAELVVKEREADCLRSTVEMKEK 365 (1222)
Q Consensus 336 eddi~~rl~~L~~kEke~~~~~~~Le~KEk 365 (1222)
-..++.++..+...|.++..++...+..+.
T Consensus 355 ~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~ 384 (726)
T PRK09841 355 RKRLNKRVSAMPSTQQEVLRLSRDVEAGRA 384 (726)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544444443
No 241
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=22.84 E-value=1.1e+03 Score=26.37 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHH-HhHHH-HHHHHHHHHHhhhHHhHHHHHHH
Q 000927 531 LRLQSQLKQQIE-TYRHQQELLLKE-HEDLQ-QDREKFEKEWEVLDEKRDEINKE 582 (1222)
Q Consensus 531 l~LqseLKeEIe-~~R~Qke~LlkE-ae~Lk-~ekekFE~EWE~LDEKR~el~kE 582 (1222)
..+..-|-+.|. .+-.+.+.++++ .-.-+ .-|.+|++.|+..|-+++.+.+.
T Consensus 76 ~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~ 130 (215)
T cd07604 76 AALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKIEKE 130 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444442 334445566676 55555 88899999999998887776654
No 242
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=22.83 E-value=6.9e+02 Score=29.97 Aligned_cols=99 Identities=20% Similarity=0.342 Sum_probs=70.1
Q ss_pred hhhHHHHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHH
Q 000927 199 LTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLRE 278 (1222)
Q Consensus 199 LaEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~e 278 (1222)
|..++.+..+|..-+-++-..| .|-+.++.+-|..+.+||.-|-.+.-....
T Consensus 222 leqm~~~~~~I~~~~~~~~~~L----------~kl~~~i~~~lekI~sREk~iN~qle~l~~------------------ 273 (359)
T PF10498_consen 222 LEQMKQHKKSIESALPETKSQL----------DKLQQDISKTLEKIESREKYINNQLEPLIQ------------------ 273 (359)
T ss_pred HHHHHHHHHHHHHhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------------------
Confidence 5667777788877776665544 345677777788888887766543333222
Q ss_pred HHHhhchhhhhhHHHHHhhhhHHhhhhhhHHHHHHhhhhHHHHHhhhhhh
Q 000927 279 WEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLS 328 (1222)
Q Consensus 279 weKkLqe~eerL~~~qr~LNqREe~~~E~~~~lk~kekeLEe~~kkie~~ 328 (1222)
.+...+.+|.+.+...++.-..+.+..+.|.....+||..+..|+.-
T Consensus 274 ---eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 274 ---EYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 24455677788888888888888888888888888888888877653
No 243
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=22.69 E-value=5.9e+02 Score=28.66 Aligned_cols=108 Identities=28% Similarity=0.323 Sum_probs=64.1
Q ss_pred HHHHHHHHhhhhhhhhcccccchhhHHHHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHh
Q 000927 177 LEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERL 256 (1222)
Q Consensus 177 LEKAL~emr~E~AeiK~~sesKLaEA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerl 256 (1222)
|+-++++|+.++.+++-+...=++....+-..+..=...++.=-+-|..-|.-.+ +-=||+-. -++-
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~-----------E~LAr~al--~~~~ 95 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN-----------EDLAREAL--EEKQ 95 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHH--HHHH
Confidence 6778888888888877776666666666555554444444333333333332222 22233222 2345
Q ss_pred hhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhh
Q 000927 257 SLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTL 297 (1222)
Q Consensus 257 Sf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~L 297 (1222)
++..-+.+|+..+..+++.+-..++.+...+..+.+.....
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~ 136 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKK 136 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777888887777777777777777766666655433
No 244
>COG5570 Uncharacterized small protein [Function unknown]
Probab=22.48 E-value=2.7e+02 Score=25.59 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=27.4
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000927 511 LQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQ 547 (1222)
Q Consensus 511 ~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Q 547 (1222)
..|+++.+.=-.--..-.++-|-..-||+||+++++|
T Consensus 19 ~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 19 REIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566666655555556677888888899999999886
No 245
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=22.15 E-value=1.3e+03 Score=27.13 Aligned_cols=105 Identities=21% Similarity=0.283 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHH-HHHHhhHh
Q 000927 676 ELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDI-LCRRLYGD 754 (1222)
Q Consensus 676 ~L~EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~-ls~KLk~q 754 (1222)
..+.|-.+-..+...-|..++-....+=.+|.+..-++..|-.||.+...++=.+..+-+.=..+-.++.. .++-
T Consensus 38 ~~~~~~~~~~~~~~~~l~~n~e~q~~lw~~i~el~~~L~~l~~er~~~v~~ri~~~eqE~~R~~~~~~Fl~~~~qh---- 113 (289)
T PF05149_consen 38 AQRKRYAAQRKESEKFLQKNEEQQQELWREIQELERELQDLAEERREEVERRIEMREQEAKRRTAAEEFLQAASQH---- 113 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 35667777888888999999999999999999999999998888887766554444333332222222221 1110
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhhHHhhhcCC
Q 000927 755 REQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQ 791 (1222)
Q Consensus 755 RE~~~~eRe~fl~~vEklK~ckncge~~~efvlsdLq 791 (1222)
-.++..-++-+.-|.+|+.++.+||..-..
T Consensus 114 -------~q~L~~~~~n~~~~~~~~~~~~~~V~~~~~ 143 (289)
T PF05149_consen 114 -------KQRLRRCEENCDRALSCAESLEEYVQEGCP 143 (289)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112233344455678899999999865443
No 246
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.01 E-value=1.1e+03 Score=26.18 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 000927 528 SELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVL 572 (1222)
Q Consensus 528 ~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~L 572 (1222)
........+..+.|+.+-.++..|..+.+.|..|.+..+..=..|
T Consensus 31 ~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l 75 (251)
T PF11932_consen 31 QQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQL 75 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666777777777777777777776666655533333
No 247
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.00 E-value=1e+03 Score=27.82 Aligned_cols=84 Identities=21% Similarity=0.348 Sum_probs=43.1
Q ss_pred HHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHH
Q 000927 309 RILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDD 388 (1222)
Q Consensus 309 ~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLlde 388 (1222)
..|..-...++.++.+|......|..+..+.+.-+..+...-.++...+......|..+......+.. .+.++++=|+.
T Consensus 8 ~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~-~~~~a~~~L~~ 86 (344)
T PF12777_consen 8 DKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEE-IKEEAEEELAE 86 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33444555566666666666666766666666666666655445555554444444444433333322 23444444443
Q ss_pred HHHHH
Q 000927 389 QRAIL 393 (1222)
Q Consensus 389 h~a~L 393 (1222)
-.-+|
T Consensus 87 a~P~L 91 (344)
T PF12777_consen 87 AEPAL 91 (344)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 248
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=21.92 E-value=1.8e+03 Score=28.67 Aligned_cols=57 Identities=25% Similarity=0.298 Sum_probs=32.7
Q ss_pred HhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 000927 361 EMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISAL 422 (1222)
Q Consensus 361 e~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~ 422 (1222)
..++..|..-+.+++++=+.--.+..--|.+++++...-|+++ .-++++.-.|..++
T Consensus 181 ~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~-----s~~dee~~~k~aev 237 (629)
T KOG0963|consen 181 AEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLK-----SKYDEEVAAKAAEV 237 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-----HhhhhhhHHHHHHH
Confidence 4466666666666666655555566666677777666666543 23344444444443
No 249
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=21.53 E-value=7.5e+02 Score=25.89 Aligned_cols=70 Identities=13% Similarity=0.306 Sum_probs=42.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 000927 688 RERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLE 767 (1222)
Q Consensus 688 k~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~eRe~fl~ 767 (1222)
|+.=+..+......+..||+++.++.+|+.+|-.-.+. ..+..++..+...|..+..-+..++.
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~----------------~~~~~i~~q~~~e~~~r~e~k~~l~~ 81 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNA----------------QQIQSIQQQFEQEKQERLEQKNQLLQ 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777788888999999998888887543332 33444444444444444444555555
Q ss_pred HHHhhc
Q 000927 768 FVEKHT 773 (1222)
Q Consensus 768 ~vEklK 773 (1222)
+++++.
T Consensus 82 ql~qv~ 87 (131)
T PF11068_consen 82 QLEQVQ 87 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555544
No 250
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=21.47 E-value=1.2e+03 Score=31.71 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=6.6
Q ss_pred HHHHHHHhhcCCC
Q 000927 978 AVEDAKLFLGESP 990 (1222)
Q Consensus 978 vv~daK~~lges~ 990 (1222)
...-||.++-+..
T Consensus 772 ~~~~~~~~~~~~~ 784 (1021)
T PTZ00266 772 LAKNAKEMYKEAV 784 (1021)
T ss_pred hhhhHHHHHhhhc
Confidence 3444555555544
No 251
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=21.43 E-value=2.6e+02 Score=26.25 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhccccchhhhhhHH
Q 000927 728 EKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAF 785 (1222)
Q Consensus 728 e~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~eRe~fl~~vEklK~ckncge~~~ef 785 (1222)
++|+.+.+.++.+.|.|...-.+...--..+..||+.|+..+-- .|..|..+..+.
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~--a~~e~~~Lk~E~ 56 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD--AYEENNKLKEEN 56 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
No 252
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=21.32 E-value=5.3e+02 Score=26.82 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=38.8
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 000927 469 KFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQ 518 (1222)
Q Consensus 469 ksL~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e 518 (1222)
++|...++++..+...|.+|.+.|+.|+..+......+..+..++++-..
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~ 90 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQ 90 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 45556666777777888888999999999998888888888888755443
No 253
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=21.10 E-value=7e+02 Score=24.78 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhhhhhhcccccchhhHHHHhhhh
Q 000927 177 LEKALRDMGEERAQTKLFSEKTLTDANTLLGGI 209 (1222)
Q Consensus 177 LEKAL~emr~E~AeiK~~sesKLaEA~aLv~~~ 209 (1222)
-++|+.+|+.+++.++..+.-|+..|-.||..+
T Consensus 67 k~~a~~elk~eia~L~~~a~~k~~~av~~~~~~ 99 (103)
T PRK08404 67 AKKILEEGEKEIEELKVKAEENFETAVSEAIKL 99 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999988654
No 254
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=20.78 E-value=1.9e+03 Score=28.33 Aligned_cols=125 Identities=24% Similarity=0.335 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh--
Q 000927 493 QILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWE-- 570 (1222)
Q Consensus 493 ~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE-- 570 (1222)
.+|..+|.+.+--+.+....++.=-|+|.-+. -=+.---|++-||.||-++- +|+-|... |-
T Consensus 4 RKLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~-n~sqkeK~e~DLKkEIKKLQ-----------RlRdQIKt----W~ss 67 (575)
T KOG2150|consen 4 RKLQQEIDRCLKKVDEGVEIFDEIYEKLHSAN-NVSQKEKLESDLKKEIKKLQ-----------RLRDQIKT----WQSS 67 (575)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHH-----------HHHHHHHh----hhcc
Confidence 35667777777777777777777777777665 33445568999999998863 23333222 32
Q ss_pred -------hhHHhHHHHHHHHHHH-HHHHHHHHHHHHhHH-------HHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHH
Q 000927 571 -------VLDEKRDEINKEQEKI-ADEKKKLEKLQHSAE-------ERLKKEECAMRDYVQREIEAIRLDKEAFEATM 633 (1222)
Q Consensus 571 -------~LDEKR~el~kE~~~I-~eEre~lek~~~~E~-------erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M 633 (1222)
.|=.-|.=|+...++- +-||+.=+|-.-+|. |=--+||.++.+++.+.++.|.++=++|.+.|
T Consensus 68 ~dIKDK~~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~~ 145 (575)
T KOG2150|consen 68 SDIKDKDSLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAEE 145 (575)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222233322221 222322222221221 22246889999999999999999999999933
No 255
>PRK10780 periplasmic chaperone; Provisional
Probab=20.28 E-value=9.4e+02 Score=25.23 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=3.7
Q ss_pred hhHHHHHHHH
Q 000927 397 QQEFELELEE 406 (1222)
Q Consensus 397 k~eFElElE~ 406 (1222)
.+.|+-++..
T Consensus 103 ~~~~qq~~~~ 112 (165)
T PRK10780 103 AQAFEQDRRR 112 (165)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 256
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=20.06 E-value=9.9e+02 Score=24.83 Aligned_cols=20 Identities=30% Similarity=0.425 Sum_probs=8.8
Q ss_pred hHHhHHHHHHHHHHHHHHHH
Q 000927 572 LDEKRDEINKEQEKIADEKK 591 (1222)
Q Consensus 572 LDEKR~el~kE~~~I~eEre 591 (1222)
||+.+..|...+.....-+.
T Consensus 51 l~~R~~~I~~~l~~Ae~~~~ 70 (156)
T CHL00118 51 LDERKEYIRKNLTKASEILA 70 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333
Done!