Query 000927
Match_columns 1222
No_of_seqs 42 out of 44
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 17:14:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000927.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_694-698//hhsearch_pdb/000927hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 68.0 10.4 22 111-132 457-480 (1184)
2 1i84_S Smooth muscle myosin he 1.0 1 1 61.5 10.5 26 61-86 318-347 (1184)
3 3vkg_A Dynein heavy chain, cyt 1.0 1 1 33.0 28.7 31 763-794 2392-2422(3245)
4 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 30.5 17.8 22 111-132 430-453 (1080)
5 3na7_A HP0958; flagellar bioge 1.0 1 1 30.3 21.2 69 523-592 3-71 (256)
6 1c1g_A Tropomyosin; contractIl 1.0 1 1 27.2 40.9 281 325-606 1-283 (284)
7 3vkg_A Dynein heavy chain, cyt 1.0 1 1 26.9 28.0 16 35-50 1373-1389(3245)
8 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 25.5 20.4 21 66-86 297-321 (1080)
9 2qag_B Septin-6, protein NEDD5 1.0 1 1 19.6 0.0 101 628-753 319-426 (427)
10 3oc5_A Toxin coregulated pilus 1.0 1 1 19.4 0.4 16 1206-1221 258-273 (318)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=67.97 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=8.6
Q ss_pred HHCCCCEEEECCCH--HHHHHHHH
Q ss_conf 21010101220100--13499999
Q 000927 111 QYNMGLLLIEKKEW--TSKIEELR 132 (1222)
Q Consensus 111 QynMGLLLiEkKEw--tSk~eel~ 132 (1222)
.+.+|+|=|=-=|- ..-||||-
T Consensus 457 ~~~IgvLDi~GFE~f~~NsfeQlc 480 (1184)
T 1i84_S 457 ASFLGILDIAGFEIFEINSFEQLC 480 (1184)
T ss_dssp CEEEEEEECCCCCCCSSBCHHHHH
T ss_pred CCEEEEEECCCCCCCCCCHHHHHH
T ss_conf 535888624786777744399998
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=61.48 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=12.9
Q ss_pred CCCCCCCCCCHHHHHHHHH----HCCCHHH
Q ss_conf 9865578986268899898----1352247
Q 000927 61 GSATVFPAESEDDWRRFRE----AGLLDEA 86 (1222)
Q Consensus 61 ~~~~~~~~~~~~~w~r~~~----~g~lde~ 86 (1222)
|...+....|...|..++. .||-+++
T Consensus 318 ~~~~~~~~~d~~~f~~~~~a~~~lg~~~~e 347 (1184)
T 1i84_S 318 GHVPIPAQQDDEMFQETLEAMTIMGFTEEE 347 (1184)
T ss_dssp SSCCCTTCCHHHHHHHHHHHHHHHTCCHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCEECHHH
T ss_conf 996788987699999999998821258999
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=33.01 Aligned_cols=31 Identities=10% Similarity=0.027 Sum_probs=16.6
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99999998612553101235687650389999
Q 000927 763 ERFLEFVEKHTSCKNCGEMMRAFVISNLQLPD 794 (1222)
Q Consensus 763 e~fl~~vEklK~ckncge~~~efvlsdLql~d 794 (1222)
..|-..-++++.+-.-|-++. |+++||...+
T Consensus 2392 ~~I~~~R~~YrpvA~r~s~Ly-F~i~dL~~i~ 2422 (3245)
T 3vkg_A 2392 QEISEVSALYNPMALSCSRVY-FAMEELSQFH 2422 (3245)
T ss_dssp HHHHHHHHHSHHHHHHHHHHH-HHHTGGGGST
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCC
T ss_conf 999999998699999998999-9999973078
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=30.47 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=9.3
Q ss_pred HHCCCCEEEECCCH--HHHHHHHH
Q ss_conf 21010101220100--13499999
Q 000927 111 QYNMGLLLIEKKEW--TSKIEELR 132 (1222)
Q Consensus 111 QynMGLLLiEkKEw--tSk~eel~ 132 (1222)
.+.+|+|=|=-=|- ..-||||-
T Consensus 430 ~~~IgvLDI~GFE~f~~NsFEQlc 453 (1080)
T 2dfs_A 430 HSFIGVLDIYGFETFEINSFEQFC 453 (1080)
T ss_dssp CEEEEEEEECCCCCCSSBCHHHHH
T ss_pred CCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 725776326776666757799999
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=30.34 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3887789999999999999999999999997876899989989998866578589889999899999999
Q 000927 523 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKK 592 (1222)
Q Consensus 523 teeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~kE~~~I~eEre~ 592 (1222)
|.+.=.-++.||. +-.+|+.++++...|-++.++|..+...+....+.+...-..+.++...+..+-..
T Consensus 3 m~~~L~~L~~LQ~-lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~ 71 (256)
T 3na7_A 3 SNTHLKQLIEISH-LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71 (256)
T ss_dssp CHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6899999999999-99999999999987589999999999999999999999999999999999978999
No 6
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=27.25 Aligned_cols=281 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44434566765878988888877778888987655775687599999998667789--9998877989998875667899
Q 000927 325 IDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERV--EIQKLLDDQRAILDAKQQEFEL 402 (1222)
Q Consensus 325 ie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~--eIQkLldeh~a~L~~Kk~eFEl 402 (1222)
++.-+..+..-+.++..-...+..-+..+......+..-+..+-.+...+..-... .+..-+......+..-...+.
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (284)
T 1c1g_A 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKAT- 79 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9378999999887688899999999999999998898889999999999999999999999999999999999999898-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89998521999999889987455454433698988879877773569988889899998647999896799999779999
Q 000927 403 ELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEK 482 (1222)
Q Consensus 403 ElE~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek 482 (1222)
.++.....+...+..-...+.....++......+..-...+......+...+..+......+......+..-...+..-.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 159 (284)
T 1c1g_A 80 DAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDAD 159 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77988999999999889889988988999999999999888889999998887775106679999999999999888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98896399999989989987767899999999999641013887789999999999999999999999997876899989
Q 000927 483 QKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDR 562 (1222)
Q Consensus 483 ~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ek 562 (1222)
..+..-+..+..+...+......+..-..++......+.-...+..++-.-...+...+..+..+-..+-.+.+.+...-
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 239 (284)
T 1c1g_A 160 RKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRA 239 (284)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999998899888889989998987887999999999999999999997587788899999999999998889899889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999886657858988999989999999999997849998489
Q 000927 563 EKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKK 606 (1222)
Q Consensus 563 ekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~ 606 (1222)
..++.....+......+..+...+......+..-+.+-.+.|..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 283 (284)
T 1c1g_A 240 EFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99998899999999999999999998899999999999997436
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=26.95 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=10.8
Q ss_pred C-CEEEECCCCCCCCCC
Q ss_conf 6-411103568899999
Q 000927 35 G-KAVAFAETQSVPPPP 50 (1222)
Q Consensus 35 g-k~~~~~~~~~~~~~~ 50 (1222)
| +.|.|+|.+-.|++-
T Consensus 1373 Gk~~VlFiDDiNmp~~D 1389 (3245)
T 3vkg_A 1373 GKWLVVFCDEINLPSTD 1389 (3245)
T ss_dssp TCEEEEEETTTTCCCCC
T ss_pred CCEEEEEECCCCCCCCC
T ss_conf 95699996566777866
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=25.54 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=10.2
Q ss_pred CCCCCHHHHHHHHH----HCCCHHH
Q ss_conf 78986268899898----1352247
Q 000927 66 FPAESEDDWRRFRE----AGLLDEA 86 (1222)
Q Consensus 66 ~~~~~~~~w~r~~~----~g~lde~ 86 (1222)
....|...|..++. .||-+++
T Consensus 297 ~~~dD~~~f~~~~~A~~~lg~~~~e 321 (1080)
T 2dfs_A 297 DGIDDAKEMVNTRQACTLLGISDSY 321 (1080)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 8854899999999999986999999
No 9
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=19.63 Aligned_cols=101 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999877778898899997799998989984210899-------999878998899999999889999999864577899
Q 000927 628 AFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEA-------ELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKE 700 (1222)
Q Consensus 628 sF~~~M~hE~s~~~ek~q~Erad~l~d~ElqkreLE~-------~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke 700 (1222)
++...++.++.....+++...+.|-+.|..+-.+-+. .++.++++|.+.++...+.+|+++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~~v~~~e~~l~~~e~~l~~~~~~~~~~~~~~~~~le~~~------------ 386 (427)
T 2qag_B 319 SLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKK------------ 386 (427)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_conf 36677777768899999999999999999999999999999999999999999999999999999999------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 97878997899998779888788655757889886534348999999998567
Q 000927 701 VAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYG 753 (1222)
Q Consensus 701 ~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~ 753 (1222)
.+|+.|+......+...+..+.......-.+..-..|-|+
T Consensus 387 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (427)
T 2qag_B 387 -------------KSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKK 426 (427)
T ss_dssp -----------------------------------------------------
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf -------------9999989889998899998743100012543334443246
No 10
>3oc5_A Toxin coregulated pilus biosynthesis protein F; multidomain protein, immunoglobulin-like (IG-like) fold, CEL adhesion; 2.40A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=19.36 Aligned_cols=16 Identities=44% Similarity=0.663 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 9776434543332345
Q 000927 1206 HPGEASIGKKLWNFFT 1221 (1222)
Q Consensus 1206 hPGevSIGKKLWtFFT 1221 (1222)
||-+.+.||+||+|.|
T Consensus 258 h~s~n~~Gk~i~~~st 273 (318)
T 3oc5_A 258 QPSNNLTGKKLYNVST 273 (318)
T ss_dssp CC---CCSEEEEEEEC
T ss_pred CCCCCCCCCCEEEEEC
T ss_conf 4456777640278852
Done!