Query 000927
Match_columns 1222
No_of_seqs 42 out of 44
Neff 3.3
Searched_HMMs 13730
Date Tue Mar 26 17:21:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000927.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_694-698//hhsearch_scop/000927hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cosa1 a.5.2.1 (A:8-48) Serin 7.5 42 0.003 7.3 3.8 31 72-103 4-41 (41)
2 d2axth1 f.23.33.1 (H:2-65) Pho 5.8 59 0.0043 6.2 0.3 12 5-16 17-28 (64)
3 d1fiua_ c.52.1.10 (A:) Restric 2.7 1.5E+02 0.011 3.1 1.9 19 844-862 74-92 (286)
4 d1o4va_ c.23.8.1 (A:) N5-CAIR 2.3 1.8E+02 0.013 2.6 0.0 13 68-80 130-142 (169)
5 d1ef1c_ a.137.5.1 (C:) Moesin 2.3 1.8E+02 0.013 2.6 -0.1 15 728-742 29-43 (90)
6 d2j9ub1 g.41.11.1 (B:115-161) 2.3 1.6E+02 0.012 2.9 -0.3 9 775-783 29-37 (47)
7 d1nkpa_ a.38.1.1 (A:) Myc prot 2.2 1.9E+02 0.014 2.5 5.3 35 741-775 54-88 (88)
8 d2gmga1 a.4.5.82 (A:1-105) Hyp 2.1 1.7E+02 0.013 2.7 -0.3 10 775-789 70-79 (105)
9 d1pfta_ g.41.3.1 (A:) Transcri 2.1 1E+02 0.0074 4.4 -1.6 14 775-788 27-40 (50)
10 d2ap3a1 a.24.27.1 (A:12-196) H 2.0 2.1E+02 0.016 2.0 16.7 184 330-513 1-184 (185)
No 1
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.54 E-value=42 Score=7.25 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=22.7
Q ss_pred HHHHHHHHHCCCHHHHHHH-------HCHHHHHHHHHHH
Q ss_conf 6889989813522477535-------3299999999988
Q 000927 72 DDWRRFREAGLLDEATMER-------KDREALMEKVSKL 103 (1222)
Q Consensus 72 ~~w~r~~~~g~lde~s~~r-------kd~~aLia~iskL 103 (1222)
...+-+..||| |++-.-| +.-+|.++||||.
T Consensus 4 QMlqdl~~aG~-D~~m~iral~qt~~rsieaaie~iskm 41 (41)
T d2cosa1 4 QMLQELVNAGC-DQEMAGRALKQTGSRSIEAALEYISKM 41 (41)
T ss_dssp HHHHHHHHHHC-CHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 89999999079-799999999982762299999998629
No 2
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.78 E-value=59 Score=6.16 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=5.9
Q ss_pred CCCCCCCCCCCC
Q ss_conf 999889876678
Q 000927 5 QRRPIPATKLTP 16 (1222)
Q Consensus 5 q~k~w~~~s~tp 16 (1222)
.+|+-|||-+||
T Consensus 17 yGKVaPGWGTTp 28 (64)
T d2axth1 17 YGKVAPGWGTTP 28 (64)
T ss_dssp SSCCCSTTTTHH
T ss_pred CCCCCCCCCCCH
T ss_conf 574258867657
No 3
>d1fiua_ c.52.1.10 (A:) Restriction endonuclease NgoIV {Neisseria gonorrhoeae [TaxId: 485]}
Probab=2.68 E-value=1.5e+02 Score=3.13 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHCCCCCCC
Q ss_conf 3278766543204697875
Q 000927 844 MSWLRKCTSKIFSISPIKK 862 (1222)
Q Consensus 844 ~SwlrKCtskIFk~SP~K~ 862 (1222)
-.|+++|-.++..+-|++-
T Consensus 74 ~~Fi~~tf~~l~hlRPG~W 92 (286)
T d1fiua_ 74 SEFVQSAFEKLQHIRPGDW 92 (286)
T ss_dssp HHHHHHHHGGGTTTSCSCE
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 9999999998615788874
No 4
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Probab=2.32 E-value=1.8e+02 Score=2.58 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=6.8
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 9862688998981
Q 000927 68 AESEDDWRRFREA 80 (1222)
Q Consensus 68 ~~~~~~w~r~~~~ 80 (1222)
+.|.++|+++++-
T Consensus 130 l~d~~i~~kl~~~ 142 (169)
T d1o4va_ 130 IKYPEIARKVKEY 142 (169)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 7899999999999
No 5
>d1ef1c_ a.137.5.1 (C:) Moesin tail domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.29 E-value=1.8e+02 Score=2.63 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHCHH
Q ss_conf 578898865343489
Q 000927 728 EKLQEQQLGMRKDID 742 (1222)
Q Consensus 728 e~le~q~~em~kdIe 742 (1222)
++++.|...++.+|+
T Consensus 29 k~lq~qL~~L~~EL~ 43 (90)
T d1ef1c_ 29 ERVQKHLKALTSELA 43 (90)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 6
>d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=2.28 E-value=1.6e+02 Score=2.94 Aligned_cols=9 Identities=44% Similarity=0.962 Sum_probs=0.0
Q ss_pred CCCHHHHHH
Q ss_conf 531012356
Q 000927 775 CKNCGEMMR 783 (1222)
Q Consensus 775 ckncge~~~ 783 (1222)
|.|||+..+
T Consensus 29 C~nCGV~~D 37 (47)
T d2j9ub1 29 CINCGVPAD 37 (47)
T ss_dssp CTTTCCBCC
T ss_pred CCCCCCCCC
T ss_conf 344587537
No 7
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.25 E-value=1.9e+02 Score=2.46 Aligned_cols=35 Identities=14% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999985676999899899999999861255
Q 000927 741 IDELDILCRRLYGDREQFKREKERFLEFVEKHTSC 775 (1222)
Q Consensus 741 IeeL~~ls~KLk~qRE~~~~eRe~fl~~vEklK~c 775 (1222)
|..|...-..|..+.+.+......+...+.+|.+|
T Consensus 54 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~gc 88 (88)
T d1nkpa_ 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGGC 88 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999999975699
No 8
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}
Probab=2.09 E-value=1.7e+02 Score=2.67 Aligned_cols=10 Identities=50% Similarity=1.474 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHC
Q ss_conf 531012356876503
Q 000927 775 CKNCGEMMRAFVISN 789 (1222)
Q Consensus 775 ckncge~~~efvlsd 789 (1222)
|++|| ||+.|
T Consensus 70 CrkCG-----fvFr~ 79 (105)
T d2gmga1 70 CRKCG-----FVFKA 79 (105)
T ss_dssp BTTTC-----CBCCC
T ss_pred HHHCC-----CEECC
T ss_conf 52367-----76056
No 9
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=2.07 E-value=1e+02 Score=4.41 Aligned_cols=14 Identities=29% Similarity=0.864 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 53101235687650
Q 000927 775 CKNCGEMMRAFVIS 788 (1222)
Q Consensus 775 ckncge~~~efvls 788 (1222)
|.+||.++.+-+++
T Consensus 27 C~~CG~Viee~~iD 40 (50)
T d1pfta_ 27 CAKCGYVIEENIID 40 (50)
T ss_dssp ESSSCCBCCCCCCC
T ss_pred CCCCCCEECCCCCC
T ss_conf 00498692524345
No 10
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=2.01 E-value=2.1e+02 Score=2.02 Aligned_cols=184 Identities=10% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56676587898888887777888898765577568759999999866778999988779899988756678998999852
Q 000927 330 SKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRK 409 (1222)
Q Consensus 330 ~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRK 409 (1222)
++-+..-..+...+..+.-.++.+......+..-+..+..+...+.......+.+.+......+......+.-.......
T Consensus 1 tt~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T d2ap3a1 1 TTDKKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKK 80 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97088999999999999999988999999999999988888989999988876655689999888888889888988789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 19999998899874554544336989888798777735699888898999986479998967999997799999889639
Q 000927 410 SIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADK 489 (1222)
Q Consensus 410 s~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkeKEkdl~~K~k~LKEkEksL~aeEK~lE~ek~~L~~dk 489 (1222)
....--......-..........-..+......+......+...-..+......+...-..+......+......|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 160 (185)
T d2ap3a1 81 SEQDFKKAKSHVDNIDNDVKRKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNY 160 (185)
T ss_dssp HHHHHTTC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999888888888777888778899999999999999998886667799999766767999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998998998776789999999
Q 000927 490 ESLQILKVEIDQIESENAQQELQI 513 (1222)
Q Consensus 490 Eel~~lK~elEK~~a~~e~q~~qi 513 (1222)
..+......+.+....+..++..|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~ek~~l 184 (185)
T d2ap3a1 161 KKLKEVSDKYTKVLNKVQKEKQDV 184 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999986604
Done!