Query 000929
Match_columns 1221
No_of_seqs 432 out of 2292
Neff 6.3
Searched_HMMs 46136
Date Tue Apr 2 00:59:43 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 2E-205 3E-210 1880.9 71.0 770 157-940 8-803 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 6E-199 1E-203 1835.2 75.7 754 158-924 33-818 (821)
3 cd01383 MYSc_type_VIII Myosin 100.0 1E-187 2E-192 1716.3 67.3 677 202-879 1-677 (677)
4 KOG0161 Myosin class II heavy 100.0 5E-183 1E-187 1756.9 69.7 770 151-926 25-819 (1930)
5 cd01381 MYSc_type_VII Myosin m 100.0 2E-182 5E-187 1669.7 66.3 660 210-879 1-671 (671)
6 cd01377 MYSc_type_II Myosin mo 100.0 5E-182 1E-186 1673.7 68.3 672 205-879 1-693 (693)
7 cd01380 MYSc_type_V Myosin mot 100.0 6E-182 1E-186 1673.0 66.4 669 210-879 1-691 (691)
8 cd01384 MYSc_type_XI Myosin mo 100.0 5E-181 1E-185 1655.9 65.9 659 209-882 1-673 (674)
9 cd01378 MYSc_type_I Myosin mot 100.0 1E-180 2E-185 1658.0 65.1 657 210-879 1-674 (674)
10 cd01387 MYSc_type_XV Myosin mo 100.0 3E-180 7E-185 1651.7 66.1 668 209-879 1-677 (677)
11 cd01385 MYSc_type_IX Myosin mo 100.0 4E-179 8E-184 1645.9 66.7 669 208-880 6-689 (692)
12 cd01382 MYSc_type_VI Myosin mo 100.0 1E-178 3E-183 1646.1 66.6 664 208-879 3-716 (717)
13 smart00242 MYSc Myosin. Large 100.0 5E-176 1E-180 1623.1 66.1 665 204-880 1-677 (677)
14 KOG0164 Myosin class I heavy c 100.0 8E-176 2E-180 1505.1 52.4 720 208-964 7-754 (1001)
15 cd01379 MYSc_type_III Myosin m 100.0 6E-175 1E-179 1597.4 63.4 635 210-879 1-653 (653)
16 cd00124 MYSc Myosin motor doma 100.0 4E-174 9E-179 1610.3 66.1 669 210-879 1-679 (679)
17 cd01386 MYSc_type_XVIII Myosin 100.0 6E-173 1E-177 1598.2 65.0 666 211-879 2-767 (767)
18 KOG0163 Myosin class VI heavy 100.0 1E-170 2E-175 1460.4 67.2 739 158-906 4-796 (1259)
19 KOG0162 Myosin class I heavy c 100.0 8E-171 2E-175 1462.3 49.3 706 207-930 16-740 (1106)
20 KOG0160 Myosin class V heavy c 100.0 3E-169 7E-174 1534.0 59.2 740 203-961 3-758 (862)
21 PF00063 Myosin_head: Myosin h 100.0 1E-168 3E-173 1575.1 59.5 658 211-868 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 1E-111 3E-116 1052.6 23.9 746 203-961 55-846 (1062)
23 cd01363 Motor_domain Myosin an 98.7 2.1E-08 4.6E-13 107.3 6.5 89 276-369 8-97 (186)
24 KOG0161 Myosin class II heavy 98.4 1.7E-05 3.7E-10 107.2 22.3 372 376-829 219-627 (1930)
25 PF02736 Myosin_N: Myosin N-te 98.1 8.7E-06 1.9E-10 66.0 6.8 42 158-199 1-42 (42)
26 KOG0160 Myosin class V heavy c 97.9 0.00019 4.2E-09 90.9 16.6 71 895-966 662-740 (862)
27 KOG4229 Myosin VII, myosin IXB 97.4 3.8E-05 8.3E-10 99.3 0.1 202 755-963 794-1008(1062)
28 KOG0520 Uncharacterized conser 96.9 0.0013 2.8E-08 83.8 6.4 45 884-928 811-855 (975)
29 PF00612 IQ: IQ calmodulin-bin 96.8 0.0016 3.4E-08 44.9 3.5 20 945-964 2-21 (21)
30 PF00612 IQ: IQ calmodulin-bin 96.6 0.0022 4.8E-08 44.2 2.9 20 884-903 2-21 (21)
31 KOG2128 Ras GTPase-activating 96.3 0.045 9.8E-07 71.9 14.8 76 885-968 567-646 (1401)
32 KOG0925 mRNA splicing factor A 95.8 0.0066 1.4E-07 71.7 3.7 66 248-319 23-89 (699)
33 COG5022 Myosin heavy chain [Cy 95.4 0.41 8.8E-06 63.9 17.7 89 882-970 792-891 (1463)
34 smart00015 IQ Short calmodulin 94.7 0.029 6.3E-07 40.7 2.7 19 884-902 4-22 (26)
35 smart00015 IQ Short calmodulin 94.6 0.035 7.6E-07 40.3 3.0 21 944-964 3-23 (26)
36 PF13207 AAA_17: AAA domain; P 94.6 0.026 5.6E-07 55.5 3.0 23 295-317 1-23 (121)
37 PTZ00014 myosin-A; Provisional 94.6 0.046 1E-06 70.9 6.1 42 906-962 777-818 (821)
38 KOG0163 Myosin class VI heavy 94.3 3.2 6.8E-05 52.0 20.1 29 884-912 814-842 (1259)
39 KOG2128 Ras GTPase-activating 93.5 0.36 7.8E-06 64.0 10.9 66 888-964 540-612 (1401)
40 PF13238 AAA_18: AAA domain; P 93.3 0.057 1.2E-06 53.1 2.8 22 296-317 1-22 (129)
41 PF13191 AAA_16: AAA ATPase do 93.3 0.067 1.5E-06 56.2 3.5 33 287-319 18-50 (185)
42 PF13401 AAA_22: AAA domain; P 93.2 0.065 1.4E-06 53.2 3.0 29 291-319 2-30 (131)
43 cd00009 AAA The AAA+ (ATPases 93.0 0.12 2.7E-06 50.9 4.7 30 289-318 15-44 (151)
44 TIGR02322 phosphon_PhnN phosph 92.9 0.078 1.7E-06 56.1 3.2 25 294-318 2-26 (179)
45 TIGR03015 pepcterm_ATPase puta 92.8 0.11 2.3E-06 58.6 4.3 28 291-318 41-68 (269)
46 cd02019 NK Nucleoside/nucleoti 92.4 0.12 2.6E-06 46.4 3.2 22 296-317 2-23 (69)
47 KOG0520 Uncharacterized conser 91.9 0.31 6.8E-06 63.0 7.1 61 885-964 793-853 (975)
48 PF00004 AAA: ATPase family as 91.8 0.12 2.5E-06 51.1 2.7 23 296-318 1-23 (132)
49 PRK05480 uridine/cytidine kina 91.6 0.17 3.6E-06 55.2 3.9 27 291-317 4-30 (209)
50 cd01131 PilT Pilus retraction 91.6 0.14 2.9E-06 55.7 3.1 25 295-319 3-27 (198)
51 smart00382 AAA ATPases associa 91.4 0.13 2.9E-06 50.0 2.7 28 293-320 2-29 (148)
52 PRK13833 conjugal transfer pro 91.4 0.21 4.5E-06 58.4 4.6 35 283-319 136-170 (323)
53 PRK06696 uridine kinase; Valid 91.4 0.27 5.8E-06 54.3 5.3 39 279-319 10-48 (223)
54 PF01583 APS_kinase: Adenylyls 91.4 0.22 4.7E-06 52.2 4.2 29 293-321 2-30 (156)
55 PRK00300 gmk guanylate kinase; 91.3 0.15 3.2E-06 55.2 3.1 26 292-317 4-29 (205)
56 PF00485 PRK: Phosphoribulokin 91.2 0.14 3.1E-06 55.2 2.8 26 296-321 2-27 (194)
57 cd01918 HprK_C HprK/P, the bif 91.1 0.18 4E-06 52.4 3.3 24 293-316 14-37 (149)
58 TIGR00150 HI0065_YjeE ATPase, 91.0 0.33 7.1E-06 49.6 5.0 27 291-317 20-46 (133)
59 cd02023 UMPK Uridine monophosp 91.0 0.17 3.6E-06 54.6 3.1 22 296-317 2-23 (198)
60 cd01129 PulE-GspE PulE/GspE Th 91.0 0.24 5.3E-06 56.3 4.6 35 284-319 72-106 (264)
61 cd00820 PEPCK_HprK Phosphoenol 91.0 0.19 4.1E-06 49.4 3.1 23 292-314 14-36 (107)
62 COG0444 DppD ABC-type dipeptid 90.9 0.15 3.3E-06 58.7 2.7 28 291-318 29-56 (316)
63 PRK08233 hypothetical protein; 90.8 0.15 3.3E-06 53.7 2.6 25 294-318 4-28 (182)
64 PRK05541 adenylylsulfate kinas 90.8 0.21 4.6E-06 52.8 3.6 29 291-319 5-33 (176)
65 TIGR00235 udk uridine kinase. 90.8 0.22 4.7E-06 54.3 3.8 28 291-318 4-31 (207)
66 COG0194 Gmk Guanylate kinase [ 90.6 0.18 3.9E-06 54.0 2.8 25 293-317 4-28 (191)
67 TIGR02173 cyt_kin_arch cytidyl 90.6 0.18 3.9E-06 52.5 2.8 23 295-317 2-24 (171)
68 PRK06762 hypothetical protein; 90.6 0.23 5E-06 51.9 3.6 24 294-317 3-26 (166)
69 PRK09270 nucleoside triphospha 90.6 0.68 1.5E-05 51.4 7.5 34 289-322 29-62 (229)
70 TIGR03420 DnaA_homol_Hda DnaA 90.4 0.39 8.5E-06 52.6 5.4 38 282-319 27-64 (226)
71 cd02020 CMPK Cytidine monophos 90.4 0.21 4.6E-06 50.5 3.1 22 296-317 2-23 (147)
72 PRK07196 fliI flagellum-specif 90.2 0.4 8.8E-06 58.1 5.7 42 275-316 137-178 (434)
73 PRK00131 aroK shikimate kinase 90.2 0.26 5.6E-06 51.4 3.6 26 292-317 3-28 (175)
74 PRK06547 hypothetical protein; 90.1 0.42 9.2E-06 50.9 5.2 28 290-317 12-39 (172)
75 PRK07261 topology modulation p 90.0 0.23 4.9E-06 52.7 3.0 22 295-316 2-23 (171)
76 PTZ00301 uridine kinase; Provi 90.0 0.24 5.1E-06 54.5 3.2 23 296-318 6-28 (210)
77 PRK08084 DNA replication initi 89.9 0.48 1E-05 52.9 5.6 41 280-320 32-72 (235)
78 cd02025 PanK Pantothenate kina 89.8 0.24 5.2E-06 54.8 3.1 24 296-319 2-25 (220)
79 cd02028 UMPK_like Uridine mono 89.8 0.25 5.5E-06 52.8 3.2 24 296-319 2-25 (179)
80 cd00227 CPT Chloramphenicol (C 89.8 0.28 6E-06 52.0 3.5 25 293-317 2-26 (175)
81 PRK08118 topology modulation p 89.7 0.27 5.9E-06 51.9 3.3 25 294-318 2-26 (167)
82 PF12846 AAA_10: AAA-like doma 89.7 0.29 6.3E-06 55.4 3.8 30 293-322 1-30 (304)
83 cd01130 VirB11-like_ATPase Typ 89.6 0.24 5.3E-06 53.1 2.9 26 293-318 25-50 (186)
84 PF13245 AAA_19: Part of AAA d 89.5 0.42 9.2E-06 43.9 4.0 28 292-319 9-36 (76)
85 PF05729 NACHT: NACHT domain 89.5 0.31 6.7E-06 50.0 3.4 27 295-321 2-28 (166)
86 PF07724 AAA_2: AAA domain (Cd 89.4 0.31 6.8E-06 51.8 3.5 24 295-318 5-28 (171)
87 TIGR02928 orc1/cdc6 family rep 89.0 0.42 9.1E-06 56.4 4.6 37 283-319 30-66 (365)
88 PRK00889 adenylylsulfate kinas 89.0 0.48 1E-05 50.0 4.5 29 292-320 3-31 (175)
89 TIGR01313 therm_gnt_kin carboh 88.9 0.24 5.3E-06 51.5 2.2 22 296-317 1-22 (163)
90 PRK10078 ribose 1,5-bisphospho 88.9 0.26 5.6E-06 52.8 2.5 23 294-316 3-25 (186)
91 TIGR01420 pilT_fam pilus retra 88.9 0.29 6.3E-06 57.8 3.1 27 293-319 122-148 (343)
92 PRK14737 gmk guanylate kinase; 88.6 0.31 6.6E-06 52.6 2.8 25 293-317 4-28 (186)
93 PF03668 ATP_bind_2: P-loop AT 88.6 0.3 6.6E-06 55.7 2.8 20 294-313 2-21 (284)
94 PRK08472 fliI flagellum-specif 88.6 2.4 5.1E-05 51.6 10.5 42 276-317 140-181 (434)
95 PF00910 RNA_helicase: RNA hel 88.6 0.35 7.7E-06 47.1 3.0 24 296-319 1-24 (107)
96 COG0572 Udk Uridine kinase [Nu 88.6 0.37 7.9E-06 53.1 3.4 26 293-318 6-33 (218)
97 KOG0804 Cytoplasmic Zn-finger 88.6 3.9 8.4E-05 48.9 11.7 75 992-1066 372-446 (493)
98 TIGR02782 TrbB_P P-type conjug 88.6 0.34 7.4E-06 56.1 3.3 34 284-319 125-158 (299)
99 PRK14738 gmk guanylate kinase; 88.5 0.36 7.8E-06 52.8 3.2 26 291-316 11-36 (206)
100 cd00071 GMPK Guanosine monopho 88.4 0.29 6.3E-06 50.0 2.4 22 296-317 2-23 (137)
101 PRK13851 type IV secretion sys 88.4 0.37 8.1E-06 56.9 3.5 26 293-318 162-187 (344)
102 PRK03846 adenylylsulfate kinas 88.3 0.64 1.4E-05 50.3 5.1 33 289-321 20-52 (198)
103 cd02024 NRK1 Nicotinamide ribo 88.3 0.33 7.1E-06 52.5 2.8 22 296-317 2-23 (187)
104 cd02027 APSK Adenosine 5'-phos 88.2 0.4 8.6E-06 49.7 3.2 24 296-319 2-25 (149)
105 TIGR02524 dot_icm_DotB Dot/Icm 88.2 0.36 7.7E-06 57.4 3.2 29 292-320 133-161 (358)
106 PRK06217 hypothetical protein; 88.1 0.35 7.6E-06 51.6 2.8 23 295-317 3-25 (183)
107 PRK13900 type IV secretion sys 88.0 0.49 1.1E-05 55.7 4.2 31 286-318 155-185 (332)
108 cd01120 RecA-like_NTPases RecA 87.9 0.48 1E-05 48.2 3.6 25 296-320 2-26 (165)
109 TIGR00554 panK_bact pantothena 87.9 0.77 1.7E-05 53.0 5.6 31 290-320 59-89 (290)
110 PF00437 T2SE: Type II/IV secr 87.9 0.31 6.8E-06 55.2 2.4 28 292-319 126-153 (270)
111 TIGR03263 guanyl_kin guanylate 87.8 0.31 6.7E-06 51.5 2.2 24 294-317 2-25 (180)
112 PRK12377 putative replication 87.8 0.79 1.7E-05 51.7 5.5 45 275-321 85-129 (248)
113 PF03266 NTPase_1: NTPase; In 87.8 0.42 9.2E-06 50.7 3.2 51 296-377 2-52 (168)
114 PRK14961 DNA polymerase III su 87.5 0.72 1.6E-05 54.9 5.3 53 263-319 7-64 (363)
115 TIGR02525 plasmid_TraJ plasmid 87.5 0.41 9E-06 57.1 3.2 27 293-319 149-175 (372)
116 PF13671 AAA_33: AAA domain; P 87.4 0.34 7.3E-06 48.9 2.1 23 296-318 2-24 (143)
117 cd00464 SK Shikimate kinase (S 87.4 0.42 9.2E-06 48.8 2.9 23 295-317 1-23 (154)
118 PRK10751 molybdopterin-guanine 87.2 0.51 1.1E-05 50.4 3.3 27 295-321 8-34 (173)
119 PRK08903 DnaA regulatory inact 87.0 1.1 2.4E-05 49.4 6.0 31 291-321 40-70 (227)
120 COG1660 Predicted P-loop-conta 86.8 0.42 9E-06 53.6 2.5 19 295-313 3-21 (286)
121 COG0529 CysC Adenylylsulfate k 86.8 0.9 2E-05 48.4 4.8 33 290-322 20-52 (197)
122 TIGR01360 aden_kin_iso1 adenyl 86.8 0.51 1.1E-05 49.9 3.1 23 295-317 5-27 (188)
123 PRK00411 cdc6 cell division co 86.7 0.72 1.6E-05 55.1 4.7 36 284-319 46-81 (394)
124 PRK10884 SH3 domain-containing 86.7 2.8 6.1E-05 46.0 8.7 52 1000-1051 116-167 (206)
125 PF03205 MobB: Molybdopterin g 86.5 0.57 1.2E-05 48.2 3.2 27 295-321 2-28 (140)
126 COG1125 OpuBA ABC-type proline 86.5 0.45 9.7E-06 53.3 2.5 25 294-318 28-52 (309)
127 PRK04182 cytidylate kinase; Pr 86.4 0.5 1.1E-05 49.6 2.8 23 295-317 2-24 (180)
128 cd02021 GntK Gluconate kinase 86.4 0.49 1.1E-05 48.4 2.7 21 296-316 2-22 (150)
129 PRK06893 DNA replication initi 86.2 1.1 2.5E-05 49.7 5.6 46 274-321 22-67 (229)
130 PRK12402 replication factor C 86.2 0.91 2E-05 52.8 5.1 33 287-319 30-62 (337)
131 PRK07667 uridine kinase; Provi 86.2 1.1 2.5E-05 48.3 5.4 26 294-319 18-43 (193)
132 PRK14087 dnaA chromosomal repl 86.1 1.9 4.2E-05 52.8 8.0 27 294-320 142-168 (450)
133 PRK08727 hypothetical protein; 86.1 1.1 2.4E-05 49.9 5.5 32 290-321 38-69 (233)
134 PRK12608 transcription termina 86.0 0.8 1.7E-05 54.4 4.4 42 278-319 118-159 (380)
135 PRK13764 ATPase; Provisional 85.9 0.68 1.5E-05 58.3 4.0 27 293-319 257-283 (602)
136 PRK14527 adenylate kinase; Pro 85.7 0.7 1.5E-05 49.6 3.6 28 291-318 4-31 (191)
137 PRK05057 aroK shikimate kinase 85.7 0.65 1.4E-05 49.3 3.2 25 293-317 4-28 (172)
138 COG1102 Cmk Cytidylate kinase 85.5 0.65 1.4E-05 48.7 3.0 23 296-318 3-25 (179)
139 TIGR02533 type_II_gspE general 85.4 0.74 1.6E-05 56.9 4.0 35 283-318 233-267 (486)
140 PRK00440 rfc replication facto 85.4 1.2 2.6E-05 51.3 5.6 37 282-318 27-63 (319)
141 PRK04040 adenylate kinase; Pro 85.4 0.72 1.6E-05 49.8 3.4 25 294-318 3-27 (188)
142 PHA00729 NTP-binding motif con 85.3 1.2 2.7E-05 49.4 5.2 38 280-318 5-42 (226)
143 COG0563 Adk Adenylate kinase a 85.3 0.67 1.5E-05 49.7 3.1 21 296-316 3-23 (178)
144 PF09755 DUF2046: Uncharacteri 85.2 67 0.0015 37.4 18.9 55 1018-1072 144-202 (310)
145 PRK07003 DNA polymerase III su 85.2 1.6 3.4E-05 56.1 6.7 53 264-320 8-65 (830)
146 PRK09825 idnK D-gluconate kina 85.1 0.74 1.6E-05 49.1 3.3 26 293-318 3-28 (176)
147 COG4608 AppF ABC-type oligopep 84.9 0.63 1.4E-05 52.7 2.7 32 291-322 37-68 (268)
148 cd03115 SRP The signal recogni 84.7 0.94 2E-05 47.7 3.9 27 295-321 2-28 (173)
149 PRK14730 coaE dephospho-CoA ki 84.6 1.1 2.3E-05 48.7 4.3 49 296-344 4-57 (195)
150 PHA02544 44 clamp loader, smal 84.5 1.5 3.3E-05 50.7 5.9 28 290-317 40-67 (316)
151 PRK00698 tmk thymidylate kinas 84.4 1 2.3E-05 48.3 4.2 28 293-320 3-30 (205)
152 cd02029 PRK_like Phosphoribulo 84.4 0.88 1.9E-05 51.8 3.6 24 296-319 2-25 (277)
153 TIGR01359 UMP_CMP_kin_fam UMP- 84.3 0.76 1.7E-05 48.6 3.0 23 296-318 2-24 (183)
154 PRK14964 DNA polymerase III su 84.3 1.1 2.5E-05 55.2 4.8 54 264-320 5-62 (491)
155 PF03193 DUF258: Protein of un 84.3 0.48 1E-05 50.0 1.4 25 292-316 34-58 (161)
156 PRK13894 conjugal transfer ATP 84.2 0.78 1.7E-05 53.7 3.3 27 293-319 148-174 (319)
157 PF13555 AAA_29: P-loop contai 84.0 1.1 2.4E-05 39.8 3.3 22 295-316 25-46 (62)
158 TIGR00176 mobB molybdopterin-g 83.8 1 2.2E-05 47.1 3.6 26 296-321 2-27 (155)
159 TIGR03499 FlhF flagellar biosy 83.7 1 2.3E-05 51.7 4.0 29 292-320 193-221 (282)
160 COG1618 Predicted nucleotide k 83.7 2.2 4.8E-05 44.9 5.9 53 294-377 6-58 (179)
161 PRK08116 hypothetical protein; 83.6 1.7 3.8E-05 49.5 5.7 46 275-320 95-141 (268)
162 PRK06761 hypothetical protein; 83.5 0.78 1.7E-05 52.7 2.8 26 294-319 4-29 (282)
163 PF06005 DUF904: Protein of un 83.5 9.1 0.0002 35.1 9.0 54 993-1046 9-62 (72)
164 PRK14956 DNA polymerase III su 83.4 1.2 2.6E-05 54.6 4.5 52 264-319 10-66 (484)
165 PF07475 Hpr_kinase_C: HPr Ser 83.4 0.82 1.8E-05 48.5 2.7 23 293-315 18-40 (171)
166 cd01983 Fer4_NifH The Fer4_Nif 83.4 1.2 2.7E-05 40.9 3.6 26 296-321 2-27 (99)
167 PRK08972 fliI flagellum-specif 83.3 2.8 6E-05 51.0 7.4 40 276-315 145-184 (444)
168 PRK05416 glmZ(sRNA)-inactivati 83.3 0.81 1.8E-05 52.8 2.9 21 293-313 6-26 (288)
169 PF00308 Bac_DnaA: Bacterial d 83.3 1.7 3.8E-05 48.0 5.4 40 282-321 21-62 (219)
170 COG0802 Predicted ATPase or ki 83.3 2 4.3E-05 44.7 5.4 29 291-319 23-51 (149)
171 PF02367 UPF0079: Uncharacteri 83.3 0.93 2E-05 45.7 2.9 27 291-317 13-39 (123)
172 COG4026 Uncharacterized protei 83.3 6.2 0.00014 43.0 9.1 52 999-1050 153-204 (290)
173 COG1123 ATPase components of v 83.3 0.68 1.5E-05 57.2 2.3 30 291-320 33-62 (539)
174 PRK03839 putative kinase; Prov 83.2 0.94 2E-05 48.1 3.1 23 295-317 2-24 (180)
175 PF07728 AAA_5: AAA domain (dy 83.1 0.9 1.9E-05 45.9 2.8 22 296-317 2-23 (139)
176 PRK14531 adenylate kinase; Pro 83.0 1.1 2.3E-05 48.0 3.4 24 294-317 3-26 (183)
177 PRK08356 hypothetical protein; 83.0 0.82 1.8E-05 49.4 2.6 21 294-314 6-26 (195)
178 cd03293 ABC_NrtD_SsuB_transpor 82.9 0.91 2E-05 49.8 3.0 26 291-316 28-53 (220)
179 COG1124 DppF ABC-type dipeptid 82.9 0.95 2.1E-05 50.5 3.1 29 291-319 31-59 (252)
180 PRK14974 cell division protein 82.9 2.1 4.5E-05 50.5 6.1 31 291-321 138-168 (336)
181 PTZ00112 origin recognition co 82.9 2.5 5.5E-05 54.9 7.0 37 283-319 770-807 (1164)
182 TIGR02881 spore_V_K stage V sp 82.9 1.3 2.9E-05 50.1 4.4 31 291-321 40-70 (261)
183 KOG0924 mRNA splicing factor A 82.8 1.3 2.8E-05 55.1 4.4 113 276-394 357-482 (1042)
184 PF00625 Guanylate_kin: Guanyl 82.8 1 2.3E-05 48.0 3.3 26 293-318 2-27 (183)
185 PRK15453 phosphoribulokinase; 82.7 1.1 2.3E-05 51.5 3.5 26 292-317 4-29 (290)
186 PRK14528 adenylate kinase; Pro 82.7 1.1 2.4E-05 48.2 3.4 24 294-317 2-25 (186)
187 PRK15093 antimicrobial peptide 82.7 0.95 2.1E-05 53.2 3.2 27 291-317 31-57 (330)
188 TIGR03574 selen_PSTK L-seryl-t 82.7 0.97 2.1E-05 50.7 3.2 24 296-319 2-25 (249)
189 COG4172 ABC-type uncharacteriz 82.7 0.69 1.5E-05 54.7 2.0 28 293-320 36-63 (534)
190 PRK13342 recombination factor 82.6 1.4 3E-05 53.4 4.7 43 274-317 18-60 (413)
191 TIGR02673 FtsE cell division A 82.6 0.99 2.1E-05 49.2 3.1 27 291-317 26-52 (214)
192 TIGR00455 apsK adenylylsulfate 82.6 1.6 3.4E-05 46.6 4.6 29 291-319 16-44 (184)
193 TIGR01166 cbiO cobalt transpor 82.6 1 2.2E-05 48.2 3.1 25 291-315 16-40 (190)
194 TIGR00960 3a0501s02 Type II (G 82.6 1 2.2E-05 49.3 3.1 26 291-316 27-52 (216)
195 cd01672 TMPK Thymidine monopho 82.5 1.2 2.6E-05 47.3 3.6 25 296-320 3-27 (200)
196 PRK14732 coaE dephospho-CoA ki 82.5 0.95 2.1E-05 49.2 2.9 44 296-343 2-53 (196)
197 KOG0744 AAA+-type ATPase [Post 82.4 1.2 2.5E-05 51.5 3.6 46 274-319 152-203 (423)
198 TIGR02788 VirB11 P-type DNA tr 82.4 0.8 1.7E-05 53.3 2.4 26 293-318 144-169 (308)
199 PRK11637 AmiB activator; Provi 82.2 12 0.00026 45.7 12.4 39 1022-1060 88-126 (428)
200 TIGR02868 CydC thiol reductant 82.2 0.73 1.6E-05 57.4 2.2 28 291-318 359-386 (529)
201 PRK11308 dppF dipeptide transp 82.2 1 2.2E-05 52.9 3.2 27 291-317 39-65 (327)
202 cd03260 ABC_PstB_phosphate_tra 82.2 1.1 2.4E-05 49.4 3.3 27 291-317 24-50 (227)
203 PRK14733 coaE dephospho-CoA ki 82.1 1.3 2.7E-05 48.7 3.6 50 295-344 8-61 (204)
204 PF04665 Pox_A32: Poxvirus A32 82.0 1 2.3E-05 50.5 3.0 26 294-319 14-39 (241)
205 PF00005 ABC_tran: ABC transpo 82.0 0.93 2E-05 45.5 2.4 26 292-317 10-35 (137)
206 cd03225 ABC_cobalt_CbiO_domain 82.0 1.1 2.4E-05 48.6 3.2 27 291-317 25-51 (211)
207 cd03259 ABC_Carb_Solutes_like 82.0 1.1 2.4E-05 48.8 3.2 27 291-317 24-50 (213)
208 COG2805 PilT Tfp pilus assembl 82.0 1.1 2.4E-05 51.4 3.2 74 234-319 70-151 (353)
209 PRK15177 Vi polysaccharide exp 81.9 1.1 2.4E-05 49.2 3.1 28 291-318 11-38 (213)
210 cd03116 MobB Molybdenum is an 81.9 1.5 3.2E-05 46.2 4.0 28 294-321 2-29 (159)
211 COG3883 Uncharacterized protei 81.9 11 0.00023 42.8 10.8 68 994-1061 44-111 (265)
212 COG4172 ABC-type uncharacteriz 81.9 0.86 1.9E-05 54.0 2.4 31 290-320 310-340 (534)
213 TIGR00064 ftsY signal recognit 81.9 2.5 5.5E-05 48.4 6.1 31 291-321 70-100 (272)
214 PRK10416 signal recognition pa 81.8 1.5 3.3E-05 51.3 4.4 31 291-321 112-142 (318)
215 COG1123 ATPase components of v 81.8 0.8 1.7E-05 56.6 2.2 28 292-319 316-343 (539)
216 PHA02530 pseT polynucleotide k 81.8 1 2.2E-05 51.7 3.0 24 294-317 3-26 (300)
217 PRK10436 hypothetical protein; 81.7 1 2.2E-05 55.3 3.0 36 283-319 209-244 (462)
218 PRK09473 oppD oligopeptide tra 81.7 1 2.2E-05 53.0 2.9 27 291-317 40-66 (330)
219 PRK09039 hypothetical protein; 81.7 43 0.00093 39.8 16.4 37 1121-1157 231-267 (343)
220 cd03255 ABC_MJ0796_Lo1CDE_FtsE 81.6 1.1 2.5E-05 48.8 3.1 27 291-317 28-54 (218)
221 PRK14957 DNA polymerase III su 81.6 1.8 3.8E-05 54.3 5.1 54 264-320 8-65 (546)
222 PRK13768 GTPase; Provisional 81.6 1.3 2.9E-05 50.0 3.7 27 295-321 4-30 (253)
223 cd02034 CooC The accessory pro 81.6 1.5 3.2E-05 43.7 3.6 26 296-321 2-27 (116)
224 TIGR03608 L_ocin_972_ABC putat 81.5 1.2 2.5E-05 48.3 3.1 26 291-316 22-47 (206)
225 PRK15079 oligopeptide ABC tran 81.4 1.1 2.4E-05 52.7 3.1 27 291-317 45-71 (331)
226 TIGR02902 spore_lonB ATP-depen 81.4 1.8 3.9E-05 54.2 5.1 31 288-318 81-111 (531)
227 PRK06645 DNA polymerase III su 81.4 1.5 3.2E-05 54.6 4.3 45 273-320 26-70 (507)
228 cd03292 ABC_FtsE_transporter F 81.3 1.2 2.6E-05 48.5 3.1 26 291-316 25-50 (214)
229 PRK09099 type III secretion sy 81.3 4.1 9E-05 49.7 7.9 40 277-316 147-186 (441)
230 cd03258 ABC_MetN_methionine_tr 81.3 0.84 1.8E-05 50.5 2.0 27 291-317 29-55 (233)
231 PRK09112 DNA polymerase III su 81.3 2 4.3E-05 51.0 5.2 40 280-319 31-71 (351)
232 cd03296 ABC_CysA_sulfate_impor 81.3 1.2 2.6E-05 49.6 3.2 27 291-317 26-52 (239)
233 TIGR02880 cbbX_cfxQ probable R 81.3 1.3 2.8E-05 51.0 3.5 28 295-322 60-87 (284)
234 PRK09111 DNA polymerase III su 81.2 1.6 3.5E-05 55.3 4.6 32 289-320 42-73 (598)
235 PLN03025 replication factor C 81.2 2 4.4E-05 50.1 5.2 36 283-318 24-59 (319)
236 COG1579 Zn-ribbon protein, pos 81.1 86 0.0019 35.4 17.4 77 993-1069 94-170 (239)
237 PRK06620 hypothetical protein; 81.1 2 4.3E-05 47.4 4.8 22 294-315 45-66 (214)
238 cd03229 ABC_Class3 This class 81.1 1.3 2.8E-05 47.1 3.2 27 291-317 24-50 (178)
239 TIGR00152 dephospho-CoA kinase 81.0 1.5 3.2E-05 47.0 3.7 47 296-343 2-54 (188)
240 COG2884 FtsE Predicted ATPase 81.0 1.1 2.4E-05 48.3 2.7 24 293-316 28-51 (223)
241 cd01124 KaiC KaiC is a circadi 80.9 1.4 3.1E-05 46.5 3.5 27 295-321 1-27 (187)
242 PRK11022 dppD dipeptide transp 80.9 1.2 2.6E-05 52.3 3.1 27 291-317 31-57 (326)
243 PF01695 IstB_IS21: IstB-like 80.8 1.5 3.3E-05 46.9 3.7 30 291-320 45-74 (178)
244 PRK03731 aroL shikimate kinase 80.8 1.4 3E-05 46.2 3.3 25 294-318 3-27 (171)
245 cd03224 ABC_TM1139_LivF_branch 80.7 1.3 2.8E-05 48.5 3.2 25 291-315 24-48 (222)
246 cd03235 ABC_Metallic_Cations A 80.6 1.2 2.6E-05 48.5 2.9 26 291-316 23-48 (213)
247 PRK04220 2-phosphoglycerate ki 80.6 1.9 4.1E-05 49.9 4.5 28 290-317 89-116 (301)
248 smart00072 GuKc Guanylate kina 80.5 1.2 2.6E-05 47.6 2.8 23 295-317 4-26 (184)
249 PRK09087 hypothetical protein; 80.5 2 4.4E-05 47.7 4.7 25 292-316 43-67 (226)
250 PRK11176 lipid transporter ATP 80.5 1.1 2.4E-05 56.6 2.9 28 291-318 367-394 (582)
251 PRK00023 cmk cytidylate kinase 80.4 1.3 2.9E-05 49.1 3.2 26 293-318 4-29 (225)
252 PRK02496 adk adenylate kinase; 80.4 1.4 3E-05 47.0 3.2 22 296-317 4-25 (184)
253 TIGR00678 holB DNA polymerase 80.3 2 4.4E-05 45.9 4.4 37 284-320 4-41 (188)
254 COG4619 ABC-type uncharacteriz 80.3 1.2 2.7E-05 47.1 2.6 24 292-315 28-51 (223)
255 cd02026 PRK Phosphoribulokinas 80.3 1.3 2.8E-05 50.8 3.0 22 296-317 2-23 (273)
256 cd03256 ABC_PhnC_transporter A 80.2 1.3 2.9E-05 49.0 3.1 27 291-317 25-51 (241)
257 TIGR03864 PQQ_ABC_ATP ABC tran 80.2 1.4 3E-05 49.0 3.2 26 291-316 25-50 (236)
258 COG1493 HprK Serine kinase of 80.1 1.4 3E-05 50.5 3.2 26 293-318 145-170 (308)
259 PRK14962 DNA polymerase III su 80.1 2 4.4E-05 53.0 4.9 52 264-319 6-62 (472)
260 PLN02796 D-glycerate 3-kinase 80.0 1.3 2.9E-05 52.1 3.1 24 295-318 102-125 (347)
261 PRK10646 ADP-binding protein; 79.9 3.1 6.8E-05 43.6 5.5 26 293-318 28-53 (153)
262 TIGR02315 ABC_phnC phosphonate 79.9 1.4 3E-05 49.0 3.2 27 291-317 26-52 (243)
263 PF01637 Arch_ATPase: Archaeal 79.9 1.3 2.7E-05 48.1 2.7 34 284-317 11-44 (234)
264 PRK10884 SH3 domain-containing 79.8 18 0.00038 39.9 11.5 6 956-961 78-83 (206)
265 PRK14963 DNA polymerase III su 79.8 1.9 4.1E-05 53.7 4.5 45 273-320 19-63 (504)
266 cd03268 ABC_BcrA_bacitracin_re 79.8 1.5 3.2E-05 47.6 3.2 26 291-316 24-49 (208)
267 PRK14969 DNA polymerase III su 79.7 2.1 4.6E-05 53.6 4.9 44 273-319 21-64 (527)
268 cd03297 ABC_ModC_molybdenum_tr 79.7 1.4 3.1E-05 48.0 3.1 26 291-317 22-47 (214)
269 PRK14530 adenylate kinase; Pro 79.7 1.5 3.1E-05 48.2 3.1 24 295-318 5-28 (215)
270 PF12325 TMF_TATA_bd: TATA ele 79.7 20 0.00043 36.2 10.8 77 992-1068 27-109 (120)
271 cd03219 ABC_Mj1267_LivG_branch 79.7 1.4 3E-05 48.8 3.0 26 291-316 24-49 (236)
272 COG2274 SunT ABC-type bacterio 79.6 1.3 2.8E-05 57.1 3.1 28 292-319 498-525 (709)
273 cd03265 ABC_DrrA DrrA is the A 79.6 1.5 3.2E-05 48.1 3.2 25 291-315 24-48 (220)
274 PRK11124 artP arginine transpo 79.5 1.5 3.2E-05 48.9 3.2 26 291-316 26-51 (242)
275 PRK13947 shikimate kinase; Pro 79.5 1.6 3.5E-05 45.6 3.3 23 295-317 3-25 (171)
276 cd03262 ABC_HisP_GlnQ_permease 79.5 1.5 3.3E-05 47.7 3.2 26 291-316 24-49 (213)
277 COG2804 PulE Type II secretory 79.5 1.4 3.1E-05 53.8 3.2 37 281-319 247-284 (500)
278 cd03223 ABCD_peroxisomal_ALDP 79.4 1.6 3.4E-05 46.0 3.2 28 291-318 25-52 (166)
279 cd03269 ABC_putative_ATPase Th 79.4 1.5 3.3E-05 47.6 3.2 26 291-316 24-49 (210)
280 cd03266 ABC_NatA_sodium_export 79.3 1.5 3.3E-05 47.8 3.2 25 291-315 29-53 (218)
281 PRK06315 type III secretion sy 79.3 3.2 6.8E-05 50.7 6.0 41 277-317 148-188 (442)
282 TIGR01184 ntrCD nitrate transp 79.3 1.5 3.3E-05 48.5 3.2 27 291-317 9-35 (230)
283 PF01580 FtsK_SpoIIIE: FtsK/Sp 79.2 1.6 3.4E-05 47.3 3.2 25 295-319 40-64 (205)
284 TIGR02538 type_IV_pilB type IV 79.2 1.4 2.9E-05 55.7 3.0 26 293-318 316-341 (564)
285 TIGR02903 spore_lon_C ATP-depe 79.2 2.2 4.9E-05 54.3 5.0 35 285-319 167-201 (615)
286 PF06005 DUF904: Protein of un 79.2 38 0.00083 31.1 11.5 49 1003-1051 5-53 (72)
287 cd03226 ABC_cobalt_CbiO_domain 79.2 1.5 3.3E-05 47.5 3.1 26 291-316 24-49 (205)
288 PRK13539 cytochrome c biogenes 79.2 1.6 3.4E-05 47.6 3.2 26 291-316 26-51 (207)
289 PRK08154 anaerobic benzoate ca 79.1 2.4 5.3E-05 49.4 4.9 43 275-317 115-157 (309)
290 TIGR03238 dnd_assoc_3 dnd syst 79.1 1.9 4.2E-05 52.7 4.1 37 275-311 9-50 (504)
291 TIGR00972 3a0107s01c2 phosphat 79.0 1.5 3.4E-05 48.9 3.2 26 291-316 25-50 (247)
292 PLN02318 phosphoribulokinase/u 79.0 2.3 4.9E-05 53.4 4.7 43 274-316 45-88 (656)
293 PRK10908 cell division protein 79.0 1.6 3.4E-05 47.9 3.2 26 291-316 26-51 (222)
294 cd03230 ABC_DR_subfamily_A Thi 78.9 1.6 3.6E-05 46.0 3.1 26 291-316 24-49 (173)
295 PF00158 Sigma54_activat: Sigm 78.9 1.5 3.3E-05 46.5 2.9 25 291-315 20-44 (168)
296 TIGR00041 DTMP_kinase thymidyl 78.9 1.9 4E-05 46.2 3.6 27 293-319 3-29 (195)
297 PF13479 AAA_24: AAA domain 78.9 1.3 2.9E-05 48.5 2.6 22 292-313 2-23 (213)
298 cd03245 ABCC_bacteriocin_expor 78.8 1.6 3.5E-05 47.8 3.1 26 291-316 28-53 (220)
299 TIGR03410 urea_trans_UrtE urea 78.8 1.6 3.4E-05 48.2 3.1 27 291-317 24-50 (230)
300 TIGR03319 YmdA_YtgF conserved 78.8 16 0.00034 45.7 12.0 24 1131-1154 280-303 (514)
301 TIGR01978 sufC FeS assembly AT 78.8 1.6 3.4E-05 48.6 3.1 26 291-316 24-49 (243)
302 PRK13695 putative NTPase; Prov 78.8 1.7 3.7E-05 45.9 3.2 24 296-319 3-26 (174)
303 PRK05342 clpX ATP-dependent pr 78.8 2.4 5.1E-05 51.4 4.8 25 293-317 108-132 (412)
304 PF13173 AAA_14: AAA domain 78.8 1.9 4.1E-05 43.2 3.4 26 293-318 2-27 (128)
305 PRK12704 phosphodiesterase; Pr 78.7 16 0.00035 45.7 12.1 7 1135-1141 290-296 (520)
306 TIGR02449 conserved hypothetic 78.6 22 0.00047 32.0 9.4 56 1005-1060 3-58 (65)
307 PRK10584 putative ABC transpor 78.6 1.6 3.6E-05 48.0 3.2 27 291-317 34-60 (228)
308 PRK06526 transposase; Provisio 78.5 1.9 4E-05 48.9 3.6 30 292-321 97-126 (254)
309 TIGR02211 LolD_lipo_ex lipopro 78.5 1.7 3.6E-05 47.6 3.2 26 291-316 29-54 (221)
310 PRK11637 AmiB activator; Provi 78.5 14 0.00031 45.0 11.5 61 998-1058 57-117 (428)
311 TIGR02640 gas_vesic_GvpN gas v 78.4 2.5 5.4E-05 48.0 4.7 40 274-316 5-44 (262)
312 cd03270 ABC_UvrA_I The excisio 78.4 1.7 3.6E-05 48.2 3.1 22 291-312 19-40 (226)
313 cd03218 ABC_YhbG The ABC trans 78.4 1.7 3.7E-05 48.0 3.2 26 291-316 24-49 (232)
314 PRK11629 lolD lipoprotein tran 78.3 1.7 3.6E-05 48.2 3.2 26 291-316 33-58 (233)
315 PRK05642 DNA replication initi 78.3 3.5 7.6E-05 46.0 5.7 27 294-320 46-72 (234)
316 TIGR00017 cmk cytidylate kinas 78.3 1.8 3.9E-05 47.9 3.3 24 295-318 4-27 (217)
317 cd03294 ABC_Pro_Gly_Bertaine T 78.3 1.7 3.6E-05 49.5 3.2 27 291-317 48-74 (269)
318 PF14532 Sigma54_activ_2: Sigm 78.2 1.1 2.3E-05 45.7 1.4 26 291-316 19-44 (138)
319 PRK11248 tauB taurine transpor 78.2 1.7 3.7E-05 49.1 3.2 27 291-317 25-51 (255)
320 PRK14242 phosphate transporter 78.2 1.7 3.6E-05 48.8 3.1 26 291-316 30-55 (253)
321 CHL00081 chlI Mg-protoporyphyr 78.2 2.7 5.8E-05 49.8 4.9 32 289-320 34-65 (350)
322 COG1428 Deoxynucleoside kinase 78.2 1.4 2.9E-05 48.4 2.2 44 293-342 4-47 (216)
323 PF06414 Zeta_toxin: Zeta toxi 78.2 1.8 3.9E-05 46.9 3.2 30 289-318 11-40 (199)
324 cd03301 ABC_MalK_N The N-termi 78.2 1.8 3.8E-05 47.2 3.2 27 291-317 24-50 (213)
325 PRK05688 fliI flagellum-specif 78.1 4.3 9.4E-05 49.6 6.7 42 275-316 150-191 (451)
326 PRK14734 coaE dephospho-CoA ki 78.1 1.9 4.2E-05 46.9 3.5 49 295-344 3-56 (200)
327 cd03238 ABC_UvrA The excision 78.1 1.8 3.9E-05 46.3 3.2 24 291-314 19-42 (176)
328 COG1126 GlnQ ABC-type polar am 78.1 1.7 3.8E-05 47.8 3.0 22 292-313 27-48 (240)
329 PRK05922 type III secretion sy 78.1 5.1 0.00011 48.8 7.3 43 275-317 139-181 (434)
330 TIGR02770 nickel_nikD nickel i 78.0 1.7 3.7E-05 48.1 3.1 27 291-317 10-36 (230)
331 PRK05428 HPr kinase/phosphoryl 78.0 1.7 3.6E-05 50.5 3.1 24 293-316 146-169 (308)
332 PF00448 SRP54: SRP54-type pro 77.9 2 4.3E-05 46.8 3.5 28 293-320 1-28 (196)
333 cd03234 ABCG_White The White s 77.9 1.5 3.2E-05 48.3 2.6 27 291-317 31-57 (226)
334 PRK14959 DNA polymerase III su 77.9 2.4 5.2E-05 53.7 4.6 53 263-319 7-64 (624)
335 PRK13541 cytochrome c biogenes 77.9 1.8 3.9E-05 46.6 3.2 26 291-316 24-49 (195)
336 cd03237 ABC_RNaseL_inhibitor_d 77.9 1.8 3.8E-05 48.8 3.2 26 292-317 24-49 (246)
337 PRK13946 shikimate kinase; Pro 77.8 1.9 4E-05 46.2 3.2 26 292-317 9-34 (184)
338 PRK09435 membrane ATPase/prote 77.8 3.9 8.4E-05 48.2 6.0 32 290-321 53-84 (332)
339 PRK13645 cbiO cobalt transport 77.7 1.7 3.6E-05 50.0 3.0 27 291-317 35-61 (289)
340 PLN02348 phosphoribulokinase 77.7 2.9 6.4E-05 50.0 5.0 28 292-319 48-75 (395)
341 PRK07721 fliI flagellum-specif 77.7 8.4 0.00018 47.2 9.0 42 276-317 141-182 (438)
342 COG2204 AtoC Response regulato 77.6 2.4 5.1E-05 51.9 4.3 65 291-360 162-233 (464)
343 PRK14251 phosphate ABC transpo 77.6 1.8 3.9E-05 48.5 3.2 27 291-317 28-54 (251)
344 COG1136 SalX ABC-type antimicr 77.6 1.6 3.4E-05 48.6 2.6 22 292-313 30-51 (226)
345 cd03261 ABC_Org_Solvent_Resist 77.5 1.8 4E-05 47.9 3.2 26 291-316 24-49 (235)
346 cd00046 DEXDc DEAD-like helica 77.5 2.1 4.6E-05 41.6 3.3 26 295-320 2-27 (144)
347 PRK14955 DNA polymerase III su 77.4 2.9 6.4E-05 50.4 5.1 37 283-319 27-64 (397)
348 PRK01184 hypothetical protein; 77.3 1.7 3.7E-05 46.2 2.8 19 295-313 3-21 (184)
349 cd03298 ABC_ThiQ_thiamine_tran 77.3 1.9 4.1E-05 46.9 3.1 27 291-317 22-48 (211)
350 PRK10247 putative ABC transpor 77.3 1.9 4.1E-05 47.5 3.2 26 291-316 31-56 (225)
351 PRK05537 bifunctional sulfate 77.3 2.1 4.6E-05 54.0 3.9 44 274-319 375-418 (568)
352 cd03267 ABC_NatA_like Similar 77.3 1.9 4E-05 48.1 3.1 25 291-315 45-69 (236)
353 PRK14247 phosphate ABC transpo 77.2 1.9 4.1E-05 48.3 3.2 26 291-316 27-52 (250)
354 cd03222 ABC_RNaseL_inhibitor T 77.2 1.9 4E-05 46.2 3.0 28 291-318 23-50 (177)
355 TIGR03496 FliI_clade1 flagella 77.2 4 8.7E-05 49.5 6.1 40 277-316 121-160 (411)
356 PF03215 Rad17: Rad17 cell cyc 77.2 2.8 6.2E-05 52.2 4.9 38 281-318 32-70 (519)
357 PRK13540 cytochrome c biogenes 77.2 2 4.3E-05 46.5 3.2 26 291-316 25-50 (200)
358 cd01394 radB RadB. The archaea 77.1 2.7 5.8E-05 46.0 4.3 38 283-320 7-46 (218)
359 PRK00625 shikimate kinase; Pro 77.1 2 4.3E-05 45.9 3.1 24 295-318 2-25 (173)
360 PRK11247 ssuB aliphatic sulfon 77.1 1.9 4.1E-05 48.9 3.1 27 291-317 36-62 (257)
361 PRK13538 cytochrome c biogenes 77.1 2 4.2E-05 46.7 3.2 26 292-317 26-51 (204)
362 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 77.0 1.9 4.1E-05 47.6 3.1 26 291-316 46-71 (224)
363 PRK14248 phosphate ABC transpo 77.0 1.9 4.1E-05 48.9 3.2 26 291-316 45-70 (268)
364 PRK04195 replication factor C 77.0 2.4 5.1E-05 52.5 4.2 27 291-317 37-63 (482)
365 TIGR00635 ruvB Holliday juncti 77.0 2.1 4.6E-05 49.2 3.6 27 291-317 28-54 (305)
366 PRK06921 hypothetical protein; 76.9 3.6 7.9E-05 46.9 5.4 29 292-320 116-144 (266)
367 cd03257 ABC_NikE_OppD_transpor 76.9 1.9 4.1E-05 47.3 3.1 26 291-316 29-54 (228)
368 KOG3354 Gluconate kinase [Carb 76.9 2.1 4.5E-05 44.7 3.0 25 294-318 13-37 (191)
369 cd03263 ABC_subfamily_A The AB 76.7 2 4.4E-05 46.9 3.2 26 291-316 26-51 (220)
370 cd03250 ABCC_MRP_domain1 Domai 76.7 2 4.4E-05 46.5 3.2 27 291-317 29-55 (204)
371 TIGR02858 spore_III_AA stage I 76.7 2.1 4.4E-05 49.1 3.3 40 279-318 97-136 (270)
372 PRK10419 nikE nickel transport 76.7 1.9 4.2E-05 49.0 3.1 25 291-315 36-60 (268)
373 cd01428 ADK Adenylate kinase ( 76.7 1.9 4.2E-05 45.8 2.9 22 296-317 2-23 (194)
374 PRK07429 phosphoribulokinase; 76.7 1.9 4E-05 50.8 3.0 26 292-317 7-32 (327)
375 PRK05439 pantothenate kinase; 76.7 3 6.5E-05 48.7 4.6 31 290-320 83-113 (311)
376 TIGR00101 ureG urease accessor 76.5 2.3 5E-05 46.3 3.5 26 294-319 2-27 (199)
377 cd03214 ABC_Iron-Siderophores_ 76.5 2.1 4.6E-05 45.5 3.2 27 291-317 23-49 (180)
378 TIGR02237 recomb_radB DNA repa 76.5 2.9 6.3E-05 45.3 4.3 28 292-319 11-38 (209)
379 PRK09493 glnQ glutamine ABC tr 76.5 2 4.4E-05 47.7 3.2 27 291-317 25-51 (240)
380 cd03232 ABC_PDR_domain2 The pl 76.4 2 4.4E-05 46.1 3.0 25 291-315 31-55 (192)
381 cd03290 ABCC_SUR1_N The SUR do 76.4 2.1 4.5E-05 46.9 3.1 26 291-316 25-50 (218)
382 PRK14250 phosphate ABC transpo 76.4 2 4.4E-05 47.8 3.1 26 291-316 27-52 (241)
383 PRK13648 cbiO cobalt transport 76.3 2 4.4E-05 48.7 3.2 27 291-317 33-59 (269)
384 PF12774 AAA_6: Hydrolytic ATP 76.3 2.4 5.1E-05 47.5 3.5 41 279-319 17-58 (231)
385 cd03215 ABC_Carb_Monos_II This 76.3 2.1 4.5E-05 45.6 3.0 27 291-317 24-50 (182)
386 PRK07952 DNA replication prote 76.2 2.5 5.4E-05 47.7 3.8 29 293-321 99-127 (244)
387 PRK14238 phosphate transporter 76.2 2 4.4E-05 48.9 3.1 28 291-318 48-75 (271)
388 cd03247 ABCC_cytochrome_bd The 76.2 2.2 4.7E-05 45.3 3.1 27 291-317 26-52 (178)
389 TIGR02323 CP_lyasePhnK phospho 76.2 2 4.4E-05 48.1 3.1 26 291-316 27-52 (253)
390 cd03236 ABC_RNaseL_inhibitor_d 76.2 1.5 3.3E-05 49.6 2.1 37 285-321 18-54 (255)
391 cd03254 ABCC_Glucan_exporter_l 76.2 2.1 4.5E-05 47.1 3.1 27 291-317 27-53 (229)
392 PRK13949 shikimate kinase; Pro 76.2 2.2 4.7E-05 45.2 3.1 24 295-318 3-26 (169)
393 cd03252 ABCC_Hemolysin The ABC 76.1 2.1 4.5E-05 47.5 3.1 27 291-317 26-52 (237)
394 TIGR03005 ectoine_ehuA ectoine 76.1 2.1 4.5E-05 48.0 3.1 26 291-316 24-49 (252)
395 TIGR00679 hpr-ser Hpr(Ser) kin 76.1 2.1 4.6E-05 49.5 3.2 24 293-316 146-169 (304)
396 TIGR01277 thiQ thiamine ABC tr 76.1 2.1 4.5E-05 46.8 3.0 27 291-317 22-48 (213)
397 PRK12704 phosphodiesterase; Pr 76.1 41 0.0009 42.2 14.6 13 1168-1180 284-296 (520)
398 PF13604 AAA_30: AAA domain; P 76.1 3.2 6.9E-05 45.0 4.4 39 282-321 8-46 (196)
399 PRK14267 phosphate ABC transpo 76.0 2.1 4.6E-05 48.0 3.2 27 291-317 28-54 (253)
400 PRK11174 cysteine/glutathione 76.0 1.5 3.2E-05 55.5 2.1 27 291-317 374-400 (588)
401 PRK00279 adk adenylate kinase; 76.0 2.2 4.7E-05 46.8 3.1 24 295-318 2-25 (215)
402 PRK11300 livG leucine/isoleuci 75.9 2.2 4.7E-05 47.9 3.2 27 291-317 29-55 (255)
403 TIGR00968 3a0106s01 sulfate AB 75.9 2.2 4.7E-05 47.5 3.2 27 291-317 24-50 (237)
404 PRK10744 pstB phosphate transp 75.8 2.1 4.6E-05 48.3 3.1 27 291-317 37-63 (260)
405 PRK11264 putative amino-acid A 75.8 2.2 4.7E-05 47.7 3.2 27 291-317 27-53 (250)
406 cd03295 ABC_OpuCA_Osmoprotecti 75.7 2.2 4.8E-05 47.5 3.2 25 291-315 25-49 (242)
407 PRK14273 phosphate ABC transpo 75.7 2.2 4.7E-05 47.9 3.2 27 291-317 31-57 (254)
408 TIGR01189 ccmA heme ABC export 75.7 2.3 5E-05 45.8 3.2 26 291-316 24-49 (198)
409 TIGR01351 adk adenylate kinase 75.7 2.1 4.5E-05 46.8 2.9 22 296-317 2-23 (210)
410 PRK10418 nikD nickel transport 75.7 2.2 4.7E-05 48.0 3.1 27 291-317 27-53 (254)
411 cd03246 ABCC_Protease_Secretio 75.6 2.4 5.1E-05 44.8 3.2 27 291-317 26-52 (173)
412 PRK13657 cyclic beta-1,2-gluca 75.6 1.5 3.4E-05 55.4 2.1 29 291-319 359-387 (588)
413 PF13476 AAA_23: AAA domain; P 75.5 2.5 5.5E-05 44.7 3.5 26 293-318 19-44 (202)
414 cd03233 ABC_PDR_domain1 The pl 75.5 2.1 4.5E-05 46.5 2.9 27 291-317 31-57 (202)
415 cd01128 rho_factor Transcripti 75.5 1.8 3.9E-05 48.9 2.4 37 282-318 5-41 (249)
416 PLN02200 adenylate kinase fami 75.5 2.2 4.8E-05 47.7 3.1 26 292-317 42-67 (234)
417 PRK14950 DNA polymerase III su 75.5 3.8 8.3E-05 52.0 5.5 45 273-320 21-65 (585)
418 COG1703 ArgK Putative periplas 75.5 8.5 0.00018 44.4 7.6 66 278-343 35-144 (323)
419 TIGR02324 CP_lyasePhnL phospho 75.5 2.3 4.9E-05 46.7 3.2 27 291-317 32-58 (224)
420 PRK09183 transposase/IS protei 75.4 2.7 5.8E-05 47.8 3.8 28 292-319 101-128 (259)
421 COG1474 CDC6 Cdc6-related prot 75.4 3.3 7.2E-05 49.4 4.7 40 283-322 32-71 (366)
422 cd03283 ABC_MutS-like MutS-lik 75.4 1.9 4.2E-05 46.9 2.6 22 293-314 25-46 (199)
423 TIGR02204 MsbA_rel ABC transpo 75.3 1.8 4E-05 54.5 2.7 28 291-318 364-391 (576)
424 PRK10790 putative multidrug tr 75.3 1.7 3.7E-05 55.0 2.4 28 291-318 365-392 (592)
425 PRK14493 putative bifunctional 75.2 2.8 6E-05 48.1 3.8 27 295-321 3-29 (274)
426 cd03244 ABCC_MRP_domain2 Domai 75.2 2.4 5.1E-05 46.5 3.2 27 291-317 28-54 (221)
427 PF08614 ATG16: Autophagy prot 75.2 25 0.00054 38.2 11.0 68 993-1060 114-181 (194)
428 cd03228 ABCC_MRP_Like The MRP 75.2 2.4 5.3E-05 44.6 3.2 27 291-317 26-52 (171)
429 PRK14532 adenylate kinase; Pro 75.1 2.2 4.7E-05 45.6 2.8 23 295-317 2-24 (188)
430 TIGR02203 MsbA_lipidA lipid A 75.1 1.8 4E-05 54.4 2.6 29 291-319 356-384 (571)
431 cd03231 ABC_CcmA_heme_exporter 75.1 2.3 5.1E-05 46.0 3.1 27 291-317 24-50 (201)
432 TIGR03878 thermo_KaiC_2 KaiC d 75.0 3 6.5E-05 47.3 4.1 28 292-319 35-62 (259)
433 PRK14240 phosphate transporter 75.0 2.3 5.1E-05 47.5 3.2 26 291-316 27-52 (250)
434 PRK13341 recombination factor 75.0 3.2 7E-05 53.7 4.8 37 282-318 41-77 (725)
435 PF12128 DUF3584: Protein of u 75.0 72 0.0016 44.3 17.8 33 888-920 227-259 (1201)
436 PRK13632 cbiO cobalt transport 75.0 2.3 5E-05 48.4 3.1 27 291-317 33-59 (271)
437 PRK13646 cbiO cobalt transport 75.0 2.3 4.9E-05 48.9 3.1 27 291-317 31-57 (286)
438 PF13177 DNA_pol3_delta2: DNA 75.0 4.8 0.0001 42.3 5.3 35 288-322 14-48 (162)
439 cd03216 ABC_Carb_Monos_I This 74.9 2.4 5.3E-05 44.4 3.1 26 291-316 24-49 (163)
440 PF13086 AAA_11: AAA domain; P 74.9 3.2 7E-05 44.8 4.2 34 282-317 8-41 (236)
441 cd03213 ABCG_EPDR ABCG transpo 74.9 2.4 5.2E-05 45.7 3.1 27 291-317 33-59 (194)
442 PRK10771 thiQ thiamine transpo 74.9 2.3 5E-05 47.0 3.1 26 291-316 23-48 (232)
443 PRK05563 DNA polymerase III su 74.9 3.5 7.6E-05 52.0 5.0 45 273-320 21-65 (559)
444 PRK13975 thymidylate kinase; P 74.9 2.4 5.3E-05 45.3 3.2 24 294-317 3-26 (196)
445 TIGR02546 III_secr_ATP type II 74.9 9.2 0.0002 46.6 8.3 41 277-317 129-169 (422)
446 TIGR01193 bacteriocin_ABC ABC- 74.8 1.8 3.9E-05 56.1 2.5 27 292-318 499-525 (708)
447 PRK05896 DNA polymerase III su 74.8 4.1 8.8E-05 51.5 5.4 53 264-320 8-65 (605)
448 TIGR03740 galliderm_ABC gallid 74.8 2.4 5.3E-05 46.5 3.2 26 291-316 24-49 (223)
449 PRK14269 phosphate ABC transpo 74.8 2.4 5.2E-05 47.4 3.2 26 291-316 26-51 (246)
450 PRK08181 transposase; Validate 74.8 2.7 6E-05 48.0 3.7 30 292-321 105-134 (269)
451 cd04155 Arl3 Arl3 subfamily. 74.8 3.2 6.9E-05 43.0 3.9 30 285-314 6-35 (173)
452 PRK07994 DNA polymerase III su 74.7 3.7 8E-05 52.4 5.1 53 264-320 8-65 (647)
453 TIGR00362 DnaA chromosomal rep 74.7 4.3 9.4E-05 49.0 5.6 27 294-320 137-163 (405)
454 PRK13638 cbiO cobalt transport 74.7 2.3 4.9E-05 48.4 3.0 26 291-316 25-50 (271)
455 cd03112 CobW_like The function 74.7 2.1 4.6E-05 44.7 2.5 23 295-317 2-24 (158)
456 PRK14263 phosphate ABC transpo 74.6 2.4 5.2E-05 48.0 3.2 27 291-317 32-58 (261)
457 PRK14255 phosphate ABC transpo 74.6 2.4 5.2E-05 47.5 3.1 25 291-315 29-53 (252)
458 PRK09544 znuC high-affinity zi 74.6 2.4 5.3E-05 47.7 3.2 27 291-317 28-54 (251)
459 PRK10575 iron-hydroxamate tran 74.6 2.2 4.8E-05 48.3 2.9 26 291-316 35-60 (265)
460 cd01673 dNK Deoxyribonucleosid 74.6 2.5 5.4E-05 45.3 3.1 22 296-317 2-23 (193)
461 TIGR01288 nodI ATP-binding ABC 74.5 2.4 5.2E-05 49.1 3.2 27 291-317 28-54 (303)
462 cd03249 ABC_MTABC3_MDL1_MDL2 M 74.5 2.4 5.1E-05 47.1 3.0 27 291-317 27-53 (238)
463 PF15254 CCDC14: Coiled-coil d 74.5 27 0.00059 44.7 12.1 48 993-1040 439-486 (861)
464 CHL00181 cbbX CbbX; Provisiona 74.4 2.8 6E-05 48.4 3.6 27 295-321 61-87 (287)
465 PRK13543 cytochrome c biogenes 74.4 2.5 5.4E-05 46.3 3.1 26 291-316 35-60 (214)
466 TIGR03411 urea_trans_UrtD urea 74.4 2.5 5.4E-05 47.0 3.2 27 291-317 26-52 (242)
467 cd03248 ABCC_TAP TAP, the Tran 74.4 2.5 5.5E-05 46.5 3.2 27 291-317 38-64 (226)
468 PRK00771 signal recognition pa 74.3 5.1 0.00011 49.0 6.0 30 291-320 93-122 (437)
469 TIGR00382 clpX endopeptidase C 74.3 3.6 7.8E-05 49.8 4.7 24 294-317 117-140 (413)
470 PRK12339 2-phosphoglycerate ki 74.3 2.4 5.1E-05 46.3 2.8 24 294-317 4-27 (197)
471 PRK06851 hypothetical protein; 74.3 3.6 7.7E-05 49.1 4.5 31 290-320 27-57 (367)
472 PRK10619 histidine/lysine/argi 74.3 2.5 5.4E-05 47.6 3.2 27 291-317 29-55 (257)
473 TIGR03771 anch_rpt_ABC anchore 74.3 2.5 5.5E-05 46.6 3.1 26 292-317 5-30 (223)
474 PF11559 ADIP: Afadin- and alp 74.3 37 0.00081 35.2 11.6 63 997-1059 61-123 (151)
475 COG0630 VirB11 Type IV secreto 74.3 3 6.4E-05 48.8 3.8 37 281-318 132-168 (312)
476 PRK08699 DNA polymerase III su 74.2 4.1 8.8E-05 47.9 5.0 39 282-320 8-48 (325)
477 PRK00106 hypothetical protein; 74.2 32 0.00069 43.2 12.8 46 1130-1181 300-347 (535)
478 PRK11701 phnK phosphonate C-P 74.2 2.4 5.3E-05 47.7 3.0 26 291-316 30-55 (258)
479 PRK14722 flhF flagellar biosyn 74.2 3 6.4E-05 49.9 3.9 27 292-318 136-162 (374)
480 PRK12323 DNA polymerase III su 74.2 3.7 8.1E-05 52.1 4.8 53 264-319 8-64 (700)
481 PRK05201 hslU ATP-dependent pr 74.1 4.2 9.1E-05 49.2 5.1 25 293-317 50-74 (443)
482 cd03221 ABCF_EF-3 ABCF_EF-3 E 74.1 2.6 5.6E-05 43.4 2.9 26 291-316 24-49 (144)
483 PRK14237 phosphate transporter 74.0 2.6 5.6E-05 47.9 3.2 26 291-316 44-69 (267)
484 PRK06936 type III secretion sy 74.0 5.5 0.00012 48.6 6.1 43 275-317 144-186 (439)
485 cd00879 Sar1 Sar1 subfamily. 74.0 4.6 0.0001 42.7 5.0 33 281-313 7-39 (190)
486 PRK14274 phosphate ABC transpo 73.9 2.7 5.8E-05 47.4 3.3 27 291-317 36-62 (259)
487 TIGR01188 drrA daunorubicin re 73.9 2.5 5.5E-05 48.9 3.2 27 291-317 17-43 (302)
488 PRK10865 protein disaggregatio 73.9 3.4 7.3E-05 54.8 4.6 25 294-318 599-623 (857)
489 KOG0922 DEAH-box RNA helicase 73.9 2.9 6.3E-05 52.4 3.7 50 291-343 64-121 (674)
490 cd03369 ABCC_NFT1 Domain 2 of 73.9 2.7 5.8E-05 45.6 3.2 27 291-317 32-58 (207)
491 PRK13548 hmuV hemin importer A 73.9 2.5 5.4E-05 47.7 3.0 26 291-316 26-51 (258)
492 cd03114 ArgK-like The function 73.8 3.3 7.1E-05 43.0 3.7 26 296-321 2-27 (148)
493 PRK06835 DNA replication prote 73.8 4.5 9.8E-05 47.6 5.2 30 292-321 182-211 (329)
494 PRK14239 phosphate transporter 73.8 2.6 5.6E-05 47.2 3.1 24 292-315 30-53 (252)
495 PF06785 UPF0242: Uncharacteri 73.8 50 0.0011 38.4 13.0 45 993-1037 132-176 (401)
496 PRK13631 cbiO cobalt transport 73.8 2.5 5.5E-05 49.5 3.1 27 291-317 50-76 (320)
497 PRK11144 modC molybdate transp 73.7 2.5 5.5E-05 50.1 3.1 25 291-315 22-46 (352)
498 PRK15056 manganese/iron transp 73.7 2.6 5.6E-05 48.0 3.1 26 291-316 31-56 (272)
499 PRK11831 putative ABC transpor 73.7 2.6 5.6E-05 47.9 3.1 26 291-316 31-56 (269)
500 cd03264 ABC_drug_resistance_li 73.7 2.3 5.1E-05 46.2 2.7 19 296-314 28-46 (211)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.6e-205 Score=1880.94 Aligned_cols=770 Identities=45% Similarity=0.734 Sum_probs=702.3
Q ss_pred CCcEEEEEcCCCCEEEEEEEEeeC--CeEEEEe--cCCeEEEEeCCCcc--CCCCCccCCcCCccccccCCchhHHHHHH
Q 000929 157 KKLRVWCRLEDGKWESGMIQSTSG--DEAFVLL--SNGNVVKVSTGELL--PANPDILEGVDDLIQLSYLNEPSVLNNIQ 230 (1221)
Q Consensus 157 ~~~~vW~~~~~~~~~~~~i~~~~~--~~~~v~~--~~g~~~~v~~~~~~--~~np~~~~~~~Dl~~L~~LnE~svL~~L~ 230 (1221)
.+..||.|+.+.+|..|.|.+..- +.++-.. .+|....|....+. ..+||.++++|||+.|+|||||+|||||+
T Consensus 8 ~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P~~~~vdDLt~LSyLNEpsVl~nL~ 87 (1463)
T COG5022 8 VGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLPKFDGVDDLTELSYLNEPAVLHNLE 87 (1463)
T ss_pred cCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCccccCchhhhhhhccCcHHHHHHHH
Confidence 488999999999999999988643 3332222 35655566655443 34577999999999999999999999999
Q ss_pred HHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCCC--CCchhhHHHHHHHhhhhCCCceEEEEcCCCCCChhH
Q 000929 231 YRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTE 308 (1221)
Q Consensus 231 ~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTe 308 (1221)
+||.+++||||.|.||||||||+++|||++++|+.|.++... +|||||||+.||+.|...++||||||||||||||||
T Consensus 88 kRY~n~~IYTYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESGAGKTe 167 (1463)
T COG5022 88 KRYNNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTE 167 (1463)
T ss_pred HHhhcCceeEEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCCCCchH
Confidence 999999999999999999999999999999999999998866 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCc----cHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEEEecCCCceeeeeeeeeeccCcee
Q 000929 309 TAKFAMQYLAALGGGSE----GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRV 384 (1221)
Q Consensus 309 t~K~il~yLa~~~~~~~----~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~tyLLEksRV 384 (1221)
+||.||+|||+++++++ .||.+||++||||||||||||+||||||||||||+|.||.+|.|+||+|++||||||||
T Consensus 168 ~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLLEKSRV 247 (1463)
T COG5022 168 NAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSRV 247 (1463)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhhhhhhh
Confidence 99999999999988765 89999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHHHHhhcCCChhhHHHHHHHH
Q 000929 385 VQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAML 464 (1221)
Q Consensus 385 v~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~~iL 464 (1221)
|+|+.+|||||||||||+|+++..++.+++..+.+|+||++++|..++|+||+++|+.|+.||++|||+.++|.+||+||
T Consensus 248 V~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~iL 327 (1463)
T COG5022 248 VHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKIL 327 (1463)
T ss_pred ccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 99999999999999999998888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceeeecCCCCcceecChHHHHHHHHhcCCCHHHHHHhhhhcEeecCCCeeeecCCHHHHHHHHHHHHHHHHH
Q 000929 465 AAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYG 544 (1221)
Q Consensus 465 aAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~i~~~l~~~qA~~~RDaLak~LY~ 544 (1221)
|||||||||+|..+ .++.+.+.+.+.++.||.|||||+..|.++|+.|.|++|+|.|.+++|..||..+||||||+||+
T Consensus 328 AaILhiGNIef~~~-r~g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~ 406 (1463)
T COG5022 328 AAILHIGNIEFKED-RNGAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYS 406 (1463)
T ss_pred HHHHhhcceeeeec-ccchhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHH
Confidence 99999999999964 34567778889999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccccccCCCCCcceEEEecccCcccCCCCChHHHHHhhhhHHHHHHHHHhhhhhhHhhhhhcCCceeecc
Q 000929 545 SLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVE 624 (1221)
Q Consensus 545 ~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~~iF~~eq~eY~~EgI~~~~i~ 624 (1221)
+||+|||++||.+|..+.. ..+|||||||||||+|+.|||||||||||||||||+||+|||++||++|.+|||+|++|+
T Consensus 407 ~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Id 485 (1463)
T COG5022 407 NLFDWIVDRINKSLDHSAA-ASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFID 485 (1463)
T ss_pred HHHHHHHHHHHhhccCccc-cccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 9999999999999987544 568999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhc-CCCCcccccccccCCCCCchHHHHHHHHHHhC--CCCCccCCC--CCceEEeecCcceeeeccccc
Q 000929 625 FEDNEECLNLIEK-KPLGVLSLLDEESNFPKATDLTFANKLKQHLG--SNSCFKGER--GRAFSIRHYAGEVPYDTNGFL 699 (1221)
Q Consensus 625 f~dn~~~ldLie~-~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~--~~~~f~~~~--~~~F~I~HyaG~V~Y~~~gfl 699 (1221)
|.|||+||||||+ .|.|||++|||||.+|.|||++|..||.+.+. +++.|.++| ...|+|.||||+|+|+++|||
T Consensus 486 y~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~l 565 (1463)
T COG5022 486 YFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFL 565 (1463)
T ss_pred cccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchh
Confidence 9999999999997 47999999999999999999999999999876 567788765 568999999999999999999
Q ss_pred hhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHHHHHHHHHcccCCeeEEec
Q 000929 700 EKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCI 778 (1221)
Q Consensus 700 eKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCI 778 (1221)
+||+|+++.++++||..|++++ ..+|.......+ ..+++||++.||.||.+||.+|++|+|||||||
T Consensus 566 dKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~~------------K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCI 633 (1463)
T COG5022 566 DKNKDPLNDDLLELLKASTNEFVSTLFDDEENIES------------KGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCI 633 (1463)
T ss_pred hhCcchhhHHHHHHHhhccchHHHHhhhhhhhccc------------cCCCCcHHHHHHHHHHHHHHHHHhcCCceeEee
Confidence 9999999999999999999986 568863322111 235689999999999999999999999999999
Q ss_pred CCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhhccccccccC------CChHHHHHHHHHhhc
Q 000929 779 KPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLS------QDPLSISVAVLQQFN 852 (1221)
Q Consensus 779 kPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~------~d~~~~~~~IL~~l~ 852 (1221)
|||..|.|+.||..+|++|||||||||+|||+|+|||.|++|+||+.||++|.|..... .|.+.+|..||..+.
T Consensus 634 kPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~ 713 (1463)
T COG5022 634 KPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELV 713 (1463)
T ss_pred CCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999976543 345889999999999
Q ss_pred CCCcceeecceeeeeccchhhHhhhhhhhhHH-HHHHHHHHHhHHHHhHhhhhhhhchhhhhhhhhhHHHHHHHHHhhh-
Q 000929 853 VLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ-AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGK- 930 (1221)
Q Consensus 853 i~~~~yqvGkTKVFLR~g~l~~LE~~R~~~l~-Aai~IQa~~Rg~laRk~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~- 930 (1221)
++...||+|.|||||++|+++.||.+|...++ .++.||++|||+..|++|.+..+.+..+|...+|...|+.+..-..
T Consensus 714 id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~ 793 (1463)
T COG5022 714 IDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKW 793 (1463)
T ss_pred CChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHH
Confidence 99999999999999999999999999999886 6789999999999999999888777777777666666654432111
Q ss_pred hhhccchhhH
Q 000929 931 SCSAVVPEIR 940 (1221)
Q Consensus 931 ~AAi~IQ~~~ 940 (1221)
++++.+|..|
T Consensus 794 ~~~~~l~~~~ 803 (1463)
T COG5022 794 RLFIKLQPLL 803 (1463)
T ss_pred HhHHHhhHHh
Confidence 1444555444
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=6.3e-199 Score=1835.25 Aligned_cols=754 Identities=31% Similarity=0.516 Sum_probs=701.1
Q ss_pred CcEEEE-------EcCCCCEEEEEEE-EeeCCeEEEEe---cCCeEEEEeCCCccCCCCCc-cCCcCCccccccCCchhH
Q 000929 158 KLRVWC-------RLEDGKWESGMIQ-STSGDEAFVLL---SNGNVVKVSTGELLPANPDI-LEGVDDLIQLSYLNEPSV 225 (1221)
Q Consensus 158 ~~~vW~-------~~~~~~~~~~~i~-~~~~~~~~v~~---~~g~~~~v~~~~~~~~np~~-~~~~~Dl~~L~~LnE~sv 225 (1221)
+..||+ ++++..|..|.|+ +..++.++|.. ++|++++|+.+++.++||+. .++++||+.|+|||||+|
T Consensus 33 g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~lnE~~v 112 (821)
T PTZ00014 33 GFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPHTNIPCV 112 (821)
T ss_pred CCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCCCCHHHH
Confidence 666676 6788899999999 88999998874 47999999999999999997 678999999999999999
Q ss_pred HHHHHHHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCC---CCCchhhHHHHHHHhhhhCCCceEEEEcCCC
Q 000929 226 LNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM---DSPHVYAIADTAYNEMMGDGVNQSIIISGES 302 (1221)
Q Consensus 226 L~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~---~~PHiyavA~~Ay~~m~~~~~nQsIiisGES 302 (1221)
||||+.||.+++||||+|++|||||||+.+|+|++++++.|++... .|||||+||+.||+.|...++||||||||||
T Consensus 113 L~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsIiiSGES 192 (821)
T PTZ00014 113 LDFLKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVSGES 192 (821)
T ss_pred HHHHHHHHcCCCCeeeECCEEEEECCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 9999999999999999999999999999999999999999998532 3899999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHccCCC--ccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEEEecCCCceeeeeeeeeecc
Q 000929 303 GAGKTETAKFAMQYLAALGGGS--EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLE 380 (1221)
Q Consensus 303 GAGKTet~K~il~yLa~~~~~~--~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~tyLLE 380 (1221)
||||||+||++|+|||.++++. ..|+++|+++||||||||||||+||||||||||||+|+|+.+|.|+||+|++||||
T Consensus 193 GAGKTe~tK~im~yla~~~~~~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLE 272 (821)
T PTZ00014 193 GAGKTEATKQIMRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFLLE 272 (821)
T ss_pred CCCchHHHHHHHHHHHHhccCCCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEEEEEecc
Confidence 9999999999999999987653 36999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHHHHhhcCCChhhHHHH
Q 000929 381 KSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQT 460 (1221)
Q Consensus 381 ksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~i 460 (1221)
|||||+|++||||||||||||+|+++++|++|+|.++.+|+||+++ |..++++||+++|..++.||++|||+++++..|
T Consensus 273 KSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~-~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~~~I 351 (821)
T PTZ00014 273 KSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINPK-CLDVPGIDDVKDFEEVMESFDSMGLSESQIEDI 351 (821)
T ss_pred CceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCCC-CccCCCCchHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999965 889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceeeecCC---CCcceecC--hHHHHHHHHhcCCCHHHHHHhhhhcEeecCCCeeeecCCHHHHHHHH
Q 000929 461 FAMLAAVLWLGNISFQVIDN---ENHVEVIA--DEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSR 535 (1221)
Q Consensus 461 ~~iLaAILhLGNi~F~~~~~---~~~~~~~~--~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~i~~~l~~~qA~~~R 535 (1221)
|+|||||||||||+|...+. ++.+.+.+ .+.++.||.||||++++|.++|+++++.+|++.+.++++++||.++|
T Consensus 352 f~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~r 431 (821)
T PTZ00014 352 FSILSGVLLLGNVEIEGKEEGGLTDAAAISDESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLK 431 (821)
T ss_pred HHHHHHHHhhcceeEeccccCCCCCceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHH
Confidence 99999999999999986532 23444443 56899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHhhccccccCCCCCcceEEEecccCcccCCCCChHHHHHhhhhHHHHHHHHHhhhhhhHhhhhh
Q 000929 536 DALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEL 615 (1221)
Q Consensus 536 DaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~~iF~~eq~eY~~ 615 (1221)
|||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||++|.+
T Consensus 432 dalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~ 510 (821)
T PTZ00014 432 DSLSKAVYEKLFLWIIRNLNATIEPPG-GFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKD 510 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998654 3457999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeccccChHHHHHHHhcCCCCcccccccccCCCCCchHHHHHHHHHHhCCCCCccCCC---CCceEEeecCccee
Q 000929 616 DGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER---GRAFSIRHYAGEVP 692 (1221)
Q Consensus 616 EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~~---~~~F~I~HyaG~V~ 692 (1221)
|||+|+.|+|.||++|||||+++|.|||++|||||++|++||.+|++||++++++|++|..++ ...|+|+||||+|+
T Consensus 511 EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~ 590 (821)
T PTZ00014 511 EGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQ 590 (821)
T ss_pred ccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEEEEeceeee
Confidence 999999999999999999999999999999999999999999999999999999999998764 57999999999999
Q ss_pred eeccccchhccCcchHHHHHHHhhchHHHH-HHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHHHHHHHHHcccC
Q 000929 693 YDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTR 771 (1221)
Q Consensus 693 Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~Fk~qL~~Lm~~L~~t~ 771 (1221)
|+++|||+||+|+|+++++++|++|+++++ .+|.......+ ...+..||+++|+.||+.||++|++|+
T Consensus 591 Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-----------~~~k~~tv~s~Fk~qL~~Lm~~L~~t~ 659 (821)
T PTZ00014 591 YCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKG-----------KLAKGQLIGSQFLNQLDSLMSLINSTE 659 (821)
T ss_pred eccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccc-----------cccCCCcHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999865 57864321111 122347999999999999999999999
Q ss_pred CeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhhcccccccc--CCChHHHHHHHHH
Q 000929 772 PHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL--SQDPLSISVAVLQ 849 (1221)
Q Consensus 772 ~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~--~~d~~~~~~~IL~ 849 (1221)
||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|.+.... ..|++..|+.||+
T Consensus 660 phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~ 739 (821)
T PTZ00014 660 PHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLE 739 (821)
T ss_pred CeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876543 3588999999999
Q ss_pred hhcCCCcceeecceeeeeccchhhHhhhhhhhhHH----HHHHHHHHHhHHHHhHhhhhhhhchhhhhhhhhhHHHHHH
Q 000929 850 QFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ----AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRR 924 (1221)
Q Consensus 850 ~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~~~l~----Aai~IQa~~Rg~laRk~y~~lr~aai~IQs~~Rg~~aRr~ 924 (1221)
.++++++.|++|+||||||.+++..||..|..++. .+..||++||||++|++|++++.++++||+.||++++++.
T Consensus 740 ~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 740 RSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998776653 5678999999999999999999999999999999988864
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=9.8e-188 Score=1716.33 Aligned_cols=677 Identities=80% Similarity=1.222 Sum_probs=645.1
Q ss_pred CCCCCccCCcCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCCCCCchhhHHH
Q 000929 202 PANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIAD 281 (1221)
Q Consensus 202 ~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~ 281 (1221)
|+||+.+++++||+.|++|||++|||+|+.||.+++||||+|+||||||||+.+|+|+++++..|+++...|||||+||+
T Consensus 1 ~~np~~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~y~~~~~~~PHifaiA~ 80 (677)
T cd01383 1 PANPDILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKKSNDSPHVYAIAD 80 (677)
T ss_pred CCCcccccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCCCCCHHHHHHhhCCCCCCCCHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCCCccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEE
Q 000929 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1221)
Q Consensus 282 ~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1221)
+||+.|..+++||||||||||||||||++|++|+||+.+++++ +|+++|+++||||||||||||++|+||||||||++|
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~~-~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l 159 (677)
T cd01383 81 TAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGS-GIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEI 159 (677)
T ss_pred HHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEE
Confidence 9999999999999999999999999999999999999998765 899999999999999999999999999999999999
Q ss_pred EecCCCceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCCccccCCcchHHHHH
Q 000929 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1221)
Q Consensus 362 ~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1221)
+||.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+.+|.
T Consensus 160 ~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~ 239 (677)
T cd01383 160 HFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFH 239 (677)
T ss_pred EECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCCCCcceecChHHHHHHHHhcCCCHHHHHHhhhhcEeecCCCe
Q 000929 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDS 521 (1221)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~ 521 (1221)
.++.||+.|||+++++..||+|||||||||||+|...++++.+++.+.+.++.||.||||++++|.++|+++++.++++.
T Consensus 240 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 319 (677)
T cd01383 240 TLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDN 319 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCce
Confidence 99999999999999999999999999999999999877767778888999999999999999999999999999999999
Q ss_pred eeecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCCCCcceEEEecccCcccCCCCChHHHHHhhhhHHHHHHH
Q 000929 522 IAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHF 601 (1221)
Q Consensus 522 i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f 601 (1221)
+.++++++||.++||+|||+||++||+|||.+||.+|.++......+||||||||||+|+.|||||||||||||+||++|
T Consensus 320 ~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f 399 (677)
T cd01383 320 IVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHF 399 (677)
T ss_pred EeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876556789999999999999999999999999999999999
Q ss_pred HHhhhhhhHhhhhhcCCceeeccccChHHHHHHHhcCCCCcccccccccCCCCCchHHHHHHHHHHhCCCCCccCCCCCc
Q 000929 602 NRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGERGRA 681 (1221)
Q Consensus 602 ~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~~~~~ 681 (1221)
|+++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||.+|++||.+|++||++++++|++|.++++..
T Consensus 400 ~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~ 479 (677)
T cd01383 400 NRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGERGGA 479 (677)
T ss_pred HHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred eEEeecCcceeeeccccchhccCcchHHHHHHHhhchHHHHHHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHHH
Q 000929 682 FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLF 761 (1221)
Q Consensus 682 F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~Fk~qL~ 761 (1221)
|+|+||||+|+|+++||++||+|.++.+++++|++|++++..+|.+.+...+.......+.++...+..||+++|+.||+
T Consensus 480 F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~~~fk~qL~ 559 (677)
T cd01383 480 FTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQLFASSMLIQSPVVGPLYVASAADSQKLSVGTKFKGQLF 559 (677)
T ss_pred eEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHHHHHhhhhccccccccccccccccccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999765432221111111112224567899999999999
Q ss_pred HHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhhccccccccCCChH
Q 000929 762 KLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPL 841 (1221)
Q Consensus 762 ~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~~ 841 (1221)
.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|++||++|++......|++
T Consensus 560 ~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~ 639 (677)
T cd01383 560 KLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLENIASQDPL 639 (677)
T ss_pred HHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccccCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877777899
Q ss_pred HHHHHHHHhhcCCCcceeecceeeeeccchhhHhhhhh
Q 000929 842 SISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1221)
Q Consensus 842 ~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R 879 (1221)
..|..||+.+++++++|++|+||||||.++++.||..|
T Consensus 640 ~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 640 SVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred HHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 99999999999999999999999999999999999876
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=5e-183 Score=1756.86 Aligned_cols=770 Identities=42% Similarity=0.700 Sum_probs=711.2
Q ss_pred ccccccCCcEEEEEcCCCCEEEEEEEEeeCCeEEEEecCCeEEE-EeCCCccCCCCCccCCcCCccccccCCchhHHHHH
Q 000929 151 LGYFIKKKLRVWCRLEDGKWESGMIQSTSGDEAFVLLSNGNVVK-VSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNI 229 (1221)
Q Consensus 151 ~~~~~~~~~~vW~~~~~~~~~~~~i~~~~~~~~~v~~~~g~~~~-v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L 229 (1221)
.+|.- +.+||||+++++|+.|.|++..|++|+|.+.+|.+++ |+.++++|+|||.++.++||+.|+|||||||||||
T Consensus 25 ~~~d~--kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPPkfdk~eDMa~LT~lNeasVL~nL 102 (1930)
T KOG0161|consen 25 RPFDS--KKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPPKFDKVEDMAELTFLNEASVLHNL 102 (1930)
T ss_pred cchhh--cceeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCCCccccccHHHhcccChHHHHhhH
Confidence 34554 5799999999999999999998888999998877777 99999999999999999999999999999999999
Q ss_pred HHHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCCC--CCchhhHHHHHHHhhhhCCCceEEEEcCCCCCChh
Q 000929 230 QYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKT 307 (1221)
Q Consensus 230 ~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKT 307 (1221)
++||..++||||.|.+||+||||+++|||+++++.+|+++... ||||||||+.||+.|+.++.||||+|+||||||||
T Consensus 103 ~~RY~~~lIyTYSGLFcVviNPyk~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKT 182 (1930)
T KOG0161|consen 103 KQRYASDLIYTYSGLFCVVINPYKRLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKT 182 (1930)
T ss_pred HHHHHhChHHHcccceeEEecCCcCCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcc
Confidence 9999999999999999999999999999999999999998654 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCC-------ccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEEEecCCCceeeeeeeeeecc
Q 000929 308 ETAKFAMQYLAALGGGS-------EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLE 380 (1221)
Q Consensus 308 et~K~il~yLa~~~~~~-------~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~tyLLE 380 (1221)
|+||.||+|||.+++++ +.++++|+++||||||||||+|++|+|||||||||+|+|+.+|.|+||.|++||||
T Consensus 183 eNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLE 262 (1930)
T KOG0161|consen 183 ENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLE 262 (1930)
T ss_pred hhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHH
Confidence 99999999999998753 57999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCC-CCCCCcccCCCccccCCcchHHHHHHHHHHHhhcCCChhhHHH
Q 000929 381 KSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKV-ANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQ 459 (1221)
Q Consensus 381 ksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~-~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~ 459 (1221)
||||++|+++||||||||||++|.++.++..|.|.+ +.+|.|+.++.. +++++||+++|..+..||++|||+++++.+
T Consensus 263 KsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~ 341 (1930)
T KOG0161|consen 263 KSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKIS 341 (1930)
T ss_pred HhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999999975 899999999876 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCceeeecCCCCcceecChHHHHHHHHhcCCCHHHHHHhhhhcEeecCCCeeeecCCHHHHHHHHHHHH
Q 000929 460 TFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALA 539 (1221)
Q Consensus 460 i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~i~~~l~~~qA~~~RDaLa 539 (1221)
||+|+|||||||||.|....+.+.+.+.+.+.++.||.||||+..+|.++|+++++++|++.+.+..+.+|+..+..+||
T Consensus 342 ~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alA 421 (1930)
T KOG0161|consen 342 IFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALA 421 (1930)
T ss_pred HHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHH
Confidence 99999999999999999876677889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHhhccccccCCCCCcceEEEecccCcccCCCCChHHHHHhhhhHHHHHHHHHhhhhhhHhhhhhcCCc
Q 000929 540 KFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVD 619 (1221)
Q Consensus 540 k~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~~iF~~eq~eY~~EgI~ 619 (1221)
|++|++||.|||.+||.+|... .+..+|||||||+|||+|+.||||||||||+||+|||+||+|+|.+||++|.+|||.
T Consensus 422 k~lYerlF~wlV~riN~sld~~-~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIe 500 (1930)
T KOG0161|consen 422 KALYERLFGWLVKRINKSLDSK-QQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIE 500 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc-cccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCc
Confidence 9999999999999999999976 566789999999999999999999999999999999999999999999999999999
Q ss_pred eeecccc-ChHHHHHHHhcCCCCcccccccccCCCCCchHHHHHHHHHHh-CCCCCccCCC----CCceEEeecCcceee
Q 000929 620 WTRVEFE-DNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHL-GSNSCFKGER----GRAFSIRHYAGEVPY 693 (1221)
Q Consensus 620 ~~~i~f~-dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~-~~~~~f~~~~----~~~F~I~HyaG~V~Y 693 (1221)
|++|||. |-++|+|||++ |+||||+|||||.+|++||.+|+.||...| ++||.|.+++ ..+|.|.||||+|.|
T Consensus 501 w~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y 579 (1930)
T KOG0161|consen 501 WDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDY 579 (1930)
T ss_pred eeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeecceecc
Confidence 9999997 99999999997 689999999999999999999999998776 8999998873 579999999999999
Q ss_pred eccccchhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCC-CCCCCcCccchHHHHHHHHHHHHHHHcccC
Q 000929 694 DTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQ-PGALDTQKQSVGTKFKGQLFKLMHQLENTR 771 (1221)
Q Consensus 694 ~~~gfleKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~-~g~~~~~~~tV~~~Fk~qL~~Lm~~L~~t~ 771 (1221)
+++|||+||+||++..++.+|..|++++ ..+|.+....... ...+.. ..+..+.+.||+..|+.||+.||.+|++|+
T Consensus 580 ~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~-~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~ 658 (1930)
T KOG0161|consen 580 NVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAA-AKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRSTH 658 (1930)
T ss_pred CccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchh-hhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999988774 6788763211100 000000 011123357899999999999999999999
Q ss_pred CeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhhcccccccc--CCChHHHHHHHHH
Q 000929 772 PHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL--SQDPLSISVAVLQ 849 (1221)
Q Consensus 772 ~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~--~~d~~~~~~~IL~ 849 (1221)
|||||||.||..+.|+.+|.++|+.||||.||||.|||+|.|||.||+|.+|..||.++.+.... ..|.+..|..|+.
T Consensus 659 phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~ 738 (1930)
T KOG0161|consen 659 PHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILE 738 (1930)
T ss_pred CceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999944444333 3577889999999
Q ss_pred hhcCCCcceeecceeeeeccchhhHhhhhhhhhHHH-HHHHHHHHhHHHHhHhhhhhh---hchhhhhhhhhhHHHHHHH
Q 000929 850 QFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQA-IIRLQKCFRGYQARSRFRELC---NGVITLQSFARGENTRRRH 925 (1221)
Q Consensus 850 ~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~~~l~A-ai~IQa~~Rg~laRk~y~~lr---~aai~IQs~~Rg~~aRr~y 925 (1221)
.+.++...|++|.||||||.|+++.||.+|...+.. ++.+|+.+|||++|+.|.+.. .++.+||..+|.|+..+.+
T Consensus 739 ~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 739 ELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999998875 567899999999999998764 4788899988888766555
Q ss_pred H
Q 000929 926 A 926 (1221)
Q Consensus 926 ~ 926 (1221)
.
T Consensus 819 ~ 819 (1930)
T KOG0161|consen 819 P 819 (1930)
T ss_pred H
Confidence 4
No 5
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=2.3e-182 Score=1669.71 Aligned_cols=660 Identities=44% Similarity=0.743 Sum_probs=624.9
Q ss_pred CcCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCCC--CCchhhHHHHHHHhh
Q 000929 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1221)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1221)
|||||+.|++|||++|||+|+.||.+++||||+|+||||||||+++|+|+++.+..|+++... |||||+||+.||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNM 80 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999987643 899999999999999
Q ss_pred hhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCCCccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEEEecCCC
Q 000929 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFG 367 (1221)
Q Consensus 288 ~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g 367 (1221)
..+++||||||||||||||||++|++|+||+.+++....|+++|+++||||||||||||++||||||||||++|+|+.+|
T Consensus 81 ~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g 160 (671)
T cd01381 81 QREKKNQCIIISGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRG 160 (671)
T ss_pred HHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCC
Confidence 99999999999999999999999999999999998777899999999999999999999999999999999999999999
Q ss_pred ceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHHHH
Q 000929 368 KICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEAL 447 (1221)
Q Consensus 368 ~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al 447 (1221)
+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|..++.||
T Consensus 161 ~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al 240 (671)
T cd01381 161 AIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAM 240 (671)
T ss_pred cEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChhhHHHHHHHHHHHHHhcCceeeecCC--CCcceecChHHHHHHHHhcCCCHHHHHHhhhhcEeecCCCeeeec
Q 000929 448 DIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN--ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKK 525 (1221)
Q Consensus 448 ~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~--~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~i~~~ 525 (1221)
+.|||+++++..||+|||||||||||+|...+. .+.+++.+.+.++.||.||||++++|.++||++++.++++.+.++
T Consensus 241 ~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~ 320 (671)
T cd01381 241 KVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGETVVTP 320 (671)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEeCCceEEec
Confidence 999999999999999999999999999987542 346888999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCCCCcceEEEecccCcccCCCCChHHHHHhhhhHHHHHHHHHhh
Q 000929 526 LTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHL 605 (1221)
Q Consensus 526 l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~~i 605 (1221)
++++||.++||||||+||++||+|||.+||.+|.........+||||||||||+|+.|||||||||||||+||++||+|+
T Consensus 321 ~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~v 400 (671)
T cd01381 321 LSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHI 400 (671)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986534467899999999999999999999999999999999999999
Q ss_pred hhhhHhhhhhcCCceeeccccChHHHHHHHhcCCCCcccccccccCCCCCchHHHHHHHHHHhCCCCCccCCC---CCce
Q 000929 606 FKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER---GRAF 682 (1221)
Q Consensus 606 F~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~~---~~~F 682 (1221)
|+.||++|.+|||+|..|+|.||++|||||+++|.|||++|||||.+|++||.+|++||++++++|++|..++ +..|
T Consensus 401 f~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~F 480 (671)
T cd01381 401 FKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKPKSTQETQF 480 (671)
T ss_pred HHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccCCCCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997543 5799
Q ss_pred EEeecCcceeeeccccchhccCcchHHHHHHHhhchHHHH-HHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHHH
Q 000929 683 SIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLF 761 (1221)
Q Consensus 683 ~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~Fk~qL~ 761 (1221)
+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|...... + .+...+..||+++|+.||+
T Consensus 481 ~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~-~---------~~~~~k~~tv~~~fk~qL~ 550 (671)
T cd01381 481 GINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEM-G---------AETRKKKPTLSSQFRRSLD 550 (671)
T ss_pred EEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccc-c---------ccccccCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875 577643210 0 0112345899999999999
Q ss_pred HHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhhcccccccc---CC
Q 000929 762 KLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL---SQ 838 (1221)
Q Consensus 762 ~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~---~~ 838 (1221)
.||++|++|+||||||||||..+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++.... ..
T Consensus 551 ~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~ 630 (671)
T cd01381 551 LLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQD 630 (671)
T ss_pred HHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987654 35
Q ss_pred ChHHHHHHHHHhhcCCCcceeecceeeeeccchhhHhhhhh
Q 000929 839 DPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1221)
Q Consensus 839 d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R 879 (1221)
|++..|..|++.+.++.+.|++|+||||||.+++..||..|
T Consensus 631 ~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 631 CLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred cHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 77889999999988888999999999999999999999876
No 6
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=5.3e-182 Score=1673.75 Aligned_cols=672 Identities=47% Similarity=0.751 Sum_probs=625.5
Q ss_pred CCccCCcCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCCC--CCchhhHHHH
Q 000929 205 PDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADT 282 (1221)
Q Consensus 205 p~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~ 282 (1221)
||.+++++||+.|++|||++|||+|+.||.+++||||+|+||||||||+++|+|++++++.|+++... |||||+||++
T Consensus 1 p~~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~ 80 (693)
T cd01377 1 PPKFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADN 80 (693)
T ss_pred CCcccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999987654 8999999999
Q ss_pred HHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCCC----------ccHHHHHHhhhHHHHHhhcCccCCCCCC
Q 000929 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS----------EGIEYEILQTNHILEAFGNAKTSRNDNS 352 (1221)
Q Consensus 283 Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~----------~~ie~~il~snpiLEAFGNAkT~rN~NS 352 (1221)
||+.|..+++||||||||||||||||++|+||+||+.++++. ..|+++|+++||||||||||||++||||
T Consensus 81 Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NS 160 (693)
T cd01377 81 AYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNS 160 (693)
T ss_pred HHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCc
Confidence 999999999999999999999999999999999999997642 3699999999999999999999999999
Q ss_pred CccccEEEEEecCCCceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCC-CCCCcccCCCcccc
Q 000929 353 SRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVA-NDYNYLNQSECLTI 431 (1221)
Q Consensus 353 SRFGK~i~l~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~-~~y~yL~~~~~~~~ 431 (1221)
||||||++|+|+..|+|+||+|.+|||||||||.|++||||||||||||+|+++++|++|+|.+. .+|+||++++| .+
T Consensus 161 SRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~ 239 (693)
T cd01377 161 SRFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TI 239 (693)
T ss_pred cccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999876 89999999876 47
Q ss_pred CCcchHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCCCCcceecChHHHHHHHHhcCCCHHHHHHhhh
Q 000929 432 DGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALS 511 (1221)
Q Consensus 432 ~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~ 511 (1221)
+++||+++|+.++.||+.|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++|+
T Consensus 240 ~~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 319 (693)
T cd01377 240 PGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAAHLLGVNSADLLKALL 319 (693)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999987666778889999999999999999999999999
Q ss_pred hcEeecCCCeeeecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCCCCcceEEEecccCcccCCCCChHHHHHh
Q 000929 512 THKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCIN 591 (1221)
Q Consensus 512 ~r~i~~~~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcIN 591 (1221)
++++.++++.+.++++++||.++||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||
T Consensus 320 ~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~-~~~~~~IgiLDIfGFE~f~~NsfEQLcIN 398 (693)
T cd01377 320 HPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTK-QQRAYFIGVLDIAGFEIFDFNSFEQLCIN 398 (693)
T ss_pred ceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCceEEEEecccccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999875 34568999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhhhhHhhhhhcCCceeecccc-ChHHHHHHHhcCCCCcccccccccCCCCCchHHHHHHHHHHhCC
Q 000929 592 YANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 670 (1221)
Q Consensus 592 yaNErLQ~~f~~~iF~~eq~eY~~EgI~~~~i~f~-dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~ 670 (1221)
||||+||++|++++|+.||++|.+|||+|+.|+|. ||++|||||+++|.|||++|||||.+|++||.+|++||++++++
T Consensus 399 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~ 478 (693)
T cd01377 399 YTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLG 478 (693)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred CCCccC--C--CCCceEEeecCcceeeeccccchhccCcchHHHHHHHhhchHHHH-HHhhcccCCCCCCCCCCCCCCCC
Q 000929 671 NSCFKG--E--RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGAL 745 (1221)
Q Consensus 671 ~~~f~~--~--~~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~ 745 (1221)
|++|.. + .+..|+|+||||+|+|+++||++||+|.|+++++++|++|+++++ .+|.......+.. .........
T Consensus 479 ~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~-~~~~~~~~~ 557 (693)
T cd01377 479 KSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDG-GGGGGKKKK 557 (693)
T ss_pred CCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhccccccc-ccccCCCCc
Confidence 988732 2 257899999999999999999999999999999999999999865 5776433211000 000001111
Q ss_pred CcCccchHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHH
Q 000929 746 DTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAG 825 (1221)
Q Consensus 746 ~~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~ 825 (1221)
..+..||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++
T Consensus 558 ~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~ 637 (693)
T cd01377 558 GGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQ 637 (693)
T ss_pred CCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHH
Confidence 23457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccc--CCChHHHHHHHHHhhcCCCcceeecceeeeeccchhhHhhhhh
Q 000929 826 RYGVLLSEKQL--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1221)
Q Consensus 826 RY~~L~~~~~~--~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R 879 (1221)
||++|++.... ..|++..|+.||+.+++++..|++|+||||||.+++..||.+|
T Consensus 638 rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 638 RYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 99999987642 4688999999999999999999999999999999999999876
No 7
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=5.8e-182 Score=1672.96 Aligned_cols=669 Identities=49% Similarity=0.817 Sum_probs=623.7
Q ss_pred CcCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCCC--CCchhhHHHHHHHhh
Q 000929 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1221)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1221)
|+|||+.|++|||++|||+|+.||.+++||||+|+||||||||+.+|+|+++++..|+++... |||||+||+.||+.|
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 80 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQM 80 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999987754 799999999999999
Q ss_pred hhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCCC------ccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEE
Q 000929 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS------EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1221)
Q Consensus 288 ~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~------~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1221)
+.+++||||||||||||||||++|+||+|||.++++. ..|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l 160 (691)
T cd01380 81 TRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQI 160 (691)
T ss_pred HhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEE
Confidence 9999999999999999999999999999999998753 4799999999999999999999999999999999999
Q ss_pred EecCCCceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCCccccCCcchHHHHH
Q 000929 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1221)
Q Consensus 362 ~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1221)
+||.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f~ 240 (691)
T cd01380 161 LFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFN 240 (691)
T ss_pred EECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCCCCcceecChHHHHHHHHhcCCCHHHHHHhhhhcEeecCCCe
Q 000929 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDS 521 (1221)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~ 521 (1221)
.++.||+.|||+++++..||+|||||||||||+|...+++......+.+.++.||.||||++++|.++|+++++.+++|.
T Consensus 241 ~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 320 (691)
T cd01380 241 ATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPKDENLQIACELLGVDASDLRKWLVKRQIVTRSEK 320 (691)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccceecCChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCee
Confidence 99999999999999999999999999999999999766544344456789999999999999999999999999999999
Q ss_pred eeecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCC--CCCcceEEEecccCcccCCCCChHHHHHhhhhHHHHH
Q 000929 522 IAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGK--QCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQ 599 (1221)
Q Consensus 522 i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~--~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~ 599 (1221)
+.++++++||.++||+|||+||++||+|||.+||.+|.+.. .....+||||||||||+|+.|||||||||||||+||+
T Consensus 321 i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~ 400 (691)
T cd01380 321 IVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQ 400 (691)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhHHHHH
Confidence 99999999999999999999999999999999999998752 3456799999999999999999999999999999999
Q ss_pred HHHHhhhhhhHhhhhhcCCceeeccccChHHHHHHHhcCCCCcccccccccCCCCCchHHHHHHHHHHhC--CCCCccCC
Q 000929 600 HFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLG--SNSCFKGE 677 (1221)
Q Consensus 600 ~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~--~~~~f~~~ 677 (1221)
+||+|+|+.||++|.+|||+|+.|+|.||++|||||++ |.|||++|||||.+|++||.+|++||+++++ +|++|..+
T Consensus 401 ~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~ 479 (691)
T cd01380 401 QFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPHFEKP 479 (691)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCCccCC
Confidence 99999999999999999999999999999999999997 5999999999999999999999999999998 89999776
Q ss_pred C--CCceEEeecCcceeeeccccchhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCC------CCCCCCCCCCCcC
Q 000929 678 R--GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPK------PAASSQPGALDTQ 748 (1221)
Q Consensus 678 ~--~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~------~~~~~~~g~~~~~ 748 (1221)
+ ...|+|+||||+|+|+++||++||+|.|+++++++|++|++++ ..+|.......+.. ++.+...++...+
T Consensus 480 ~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (691)
T cd01380 480 RFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKRAKQH 559 (691)
T ss_pred CCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccccccC
Confidence 4 5789999999999999999999999999999999999999886 46786543211110 1111111222445
Q ss_pred ccchHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhh
Q 000929 749 KQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYG 828 (1221)
Q Consensus 749 ~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~ 828 (1221)
..||+++|+.||+.||++|++|+||||||||||..+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||+
T Consensus 560 ~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~ry~ 639 (691)
T cd01380 560 KPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFAQRYR 639 (691)
T ss_pred CCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc-cCCChHHHHHHHHHhhcCCCcceeecceeeeeccchhhHhhhhh
Q 000929 829 VLLSEKQ-LSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1221)
Q Consensus 829 ~L~~~~~-~~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R 879 (1221)
+|++... ...|++..|+.||+.+.++...|++|+||||||.+++..||..|
T Consensus 640 ~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 640 VLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 9999875 35688999999999998888999999999999999999999876
No 8
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=5.3e-181 Score=1655.91 Aligned_cols=659 Identities=48% Similarity=0.813 Sum_probs=619.3
Q ss_pred CCcCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCC-CCChHHHHHHhccCCC--CCchhhHHHHHHH
Q 000929 209 EGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAYN 285 (1221)
Q Consensus 209 ~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~-iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~ 285 (1221)
+||+||+.|++|||++|||+|+.||.+++||||+|+||||||||+++| ||+++++..|+++... |||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999 9999999999987754 8999999999999
Q ss_pred hhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCCC----ccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEE
Q 000929 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS----EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1221)
Q Consensus 286 ~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~----~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1221)
+|...++||||||||||||||||++|++|+||+.++++. ..|+++|+++||||||||||||++|+||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 999999999999999999999999999999999997643 3699999999999999999999999999999999999
Q ss_pred EecCCCceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCCccccCCcchHHHHH
Q 000929 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1221)
Q Consensus 362 ~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1221)
+|+.+|.|+||+|.+||||||||++|++||||||||||||+| +++++++|+|.++.+|+||++++|..++++||+++|+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g-~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~ 239 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAA-PPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYL 239 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcC-CHHHHHHcCCCChHhCccccCCCCccccccchHHHHH
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCCCCcceec---ChHHHHHHHHhcCCCHHHHHHhhhhcEeecC
Q 000929 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVI---ADEAVTTAAMLMGCSSDELMLALSTHKIQAG 518 (1221)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~---~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~ 518 (1221)
.++.||+.|||+++++..||+|||||||||||+|...++.+.+.+. +.+.++.||.||||++++|.++|+++++.++
T Consensus 240 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 319 (674)
T cd01384 240 ATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTP 319 (674)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 9999999999999999999999999999999999876544444443 3588999999999999999999999999999
Q ss_pred CCeeeecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCCCCcceEEEecccCcccCCCCChHHHHHhhhhHHHH
Q 000929 519 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQ 598 (1221)
Q Consensus 519 ~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ 598 (1221)
++.+.++++++||.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+||
T Consensus 320 ~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ 398 (674)
T cd01384 320 EEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDP-DSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQ 398 (674)
T ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeEEEEEecccccccCcCCHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999998753 34689999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHhhhhhcCCceeeccccChHHHHHHHhcCCCCcccccccccCCCCCchHHHHHHHHHHhCCCCCccCCC
Q 000929 599 QHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER 678 (1221)
Q Consensus 599 ~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~~ 678 (1221)
++||+++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||.+|++||.+|++||++++++|++|..++
T Consensus 399 ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~ 478 (674)
T cd01384 399 QHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPK 478 (674)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred --CCceEEeecCcceeeeccccchhccCcchHHHHHHHhhchHHHH-HHhhcccCCCCCCCCCCCCCCCCCcCccchHHH
Q 000929 679 --GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTK 755 (1221)
Q Consensus 679 --~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~ 755 (1221)
+..|+|+||||+|+|+++||++||+|.|+++++++|++|+++++ .+|....... +...+..||+++
T Consensus 479 ~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~-----------~~~~k~~tv~~~ 547 (674)
T cd01384 479 LSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEET-----------SKSSKFSSIGSR 547 (674)
T ss_pred CCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhccccccc-----------ccccccccHHHH
Confidence 57999999999999999999999999999999999999999865 5775432111 012345799999
Q ss_pred HHHHHHHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhhccccccc
Q 000929 756 FKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQ 835 (1221)
Q Consensus 756 Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~ 835 (1221)
|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++...
T Consensus 548 fk~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~ 627 (674)
T cd01384 548 FKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVL 627 (674)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred c-CCChHHHHHHHHHhhcCCCcceeecceeeeeccchhhHhhhhhhhh
Q 000929 836 L-SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQV 882 (1221)
Q Consensus 836 ~-~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~~~ 882 (1221)
. ..|.+..|+.||+.+++ +.|++|+||||||.+++..||..|...
T Consensus 628 ~~~~~~~~~~~~il~~~~~--~~~~~GktkVFlr~~~~~~LE~~R~~~ 673 (674)
T cd01384 628 KGSSDDKAACKKILDKMGL--KGYQIGKTKVFLRAGQMAELDARRTEV 673 (674)
T ss_pred cCCCcHHHHHHHHHHhCCC--CCEEecCeeEEEcCCHHHHHHHHHHhc
Confidence 4 45778899999998765 579999999999999999999999764
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1e-180 Score=1658.04 Aligned_cols=657 Identities=44% Similarity=0.734 Sum_probs=621.2
Q ss_pred CcCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCCC--CCchhhHHHHHHHhh
Q 000929 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1221)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1221)
||+||+.|++|||++|||+|+.||.+|+||||+|+||||||||+++|+|+++++..|+++... |||||+||+.||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m 80 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSM 80 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999988753 899999999999999
Q ss_pred hhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCCC---ccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEEEec
Q 000929 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS---EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFS 364 (1221)
Q Consensus 288 ~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~---~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~ 364 (1221)
+.+++||||||||||||||||++|++|+||+.++++. ..|+++|+++||||||||||||++|+||||||||++|+|+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~ 160 (674)
T cd01378 81 KSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFD 160 (674)
T ss_pred HHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEEC
Confidence 9999999999999999999999999999999998754 3599999999999999999999999999999999999999
Q ss_pred CCCceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCCccccCCcchHHHHHHHH
Q 000929 365 AFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLM 444 (1221)
Q Consensus 365 ~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~ 444 (1221)
.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|..++
T Consensus 161 ~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~ 240 (674)
T cd01378 161 FKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQ 240 (674)
T ss_pred CCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCCCCcceecChHHHHHHHHhcCCCHHHHHHhhhhcEeecCC----C
Q 000929 445 EALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGK----D 520 (1221)
Q Consensus 445 ~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~----e 520 (1221)
.||+.|||+++++..||+|||||||||||+|...++ +.+.+.+.+.++.||.||||++++|.++|+++++.+++ |
T Consensus 241 ~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~e 319 (674)
T cd01378 241 NAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISDKDVLDFAAYLLGVDPSELEKALTSRTIETGGGGRGE 319 (674)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCChHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCCce
Confidence 999999999999999999999999999999986543 33678899999999999999999999999999999998 9
Q ss_pred eeeecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCCCCcceEEEecccCcccCCCCChHHHHHhhhhHHHHHH
Q 000929 521 SIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQH 600 (1221)
Q Consensus 521 ~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~ 600 (1221)
.+.++++++||.++||+|||+||++||+|||.+||.+|.+.......+||||||||||+|+.|||||||||||||+||++
T Consensus 320 ~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~ 399 (674)
T cd01378 320 VYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQI 399 (674)
T ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986445678999999999999999999999999999999999
Q ss_pred HHHhhhhhhHhhhhhcCCceeeccccChHHHHHHHhc-CCCCcccccccccCCC-CCchHHHHHHHHHHhCCCCCccCC-
Q 000929 601 FNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEK-KPLGVLSLLDEESNFP-KATDLTFANKLKQHLGSNSCFKGE- 677 (1221)
Q Consensus 601 f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~-~p~Gil~lLDeE~~~p-~~tD~~f~~kL~~~~~~~~~f~~~- 677 (1221)
||+|+|+.||++|.+|||+|+.|+|.||++|||||++ +|.|||++|||||.+| ++||++|++||++++++|++|..+
T Consensus 400 f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~~~~~~ 479 (674)
T cd01378 400 FIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPHSDHFS 479 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCCCCCCC
Confidence 9999999999999999999999999999999999999 8999999999999999 999999999999999999986543
Q ss_pred -CCCceEEeecCcceeeeccccchhccCcchHHHHHHHhhchHHHH-HHhhcccCCCCCCCCCCCCCCCCCcCccchHHH
Q 000929 678 -RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTK 755 (1221)
Q Consensus 678 -~~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~ 755 (1221)
.+..|+|+||||+|+|+++|||+||+|.++++++++|++|+++++ .+|.+.....+ ..+..||+++
T Consensus 480 ~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~------------~~~~~tv~~~ 547 (674)
T cd01378 480 SGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS------------KKRPTTAGFK 547 (674)
T ss_pred CCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc------------cCCCCcHHHH
Confidence 367999999999999999999999999999999999999999865 57764221100 1134799999
Q ss_pred HHHHHHHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhhccccccc
Q 000929 756 FKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQ 835 (1221)
Q Consensus 756 Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~ 835 (1221)
|+.||+.||++|++|+||||||||||..+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++||++|++...
T Consensus 548 fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~ 627 (674)
T cd01378 548 IKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTW 627 (674)
T ss_pred HHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred c--CCChHHHHHHHHHhhcCCCcceeecceeeeeccc-hhhHhhhhh
Q 000929 836 L--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSG-QLAALEDRR 879 (1221)
Q Consensus 836 ~--~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g-~l~~LE~~R 879 (1221)
. ..|++..|+.||+.++++++.|++|+||||||.| ++..||.+|
T Consensus 628 ~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 628 PTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred cccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 2 4688999999999999999999999999999997 799999876
No 10
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=3.5e-180 Score=1651.72 Aligned_cols=668 Identities=41% Similarity=0.727 Sum_probs=618.3
Q ss_pred CCcCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCCC--CCchhhHHHHHHHh
Q 000929 209 EGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNE 286 (1221)
Q Consensus 209 ~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~ 286 (1221)
+|||||+.|++|||++|||+|+.||.+|+||||+|+||||||||+.+|+|+++.+..|+++... |||||+||++||+.
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~ 80 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAK 80 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999987654 89999999999999
Q ss_pred hhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCC-CccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEEEecC
Q 000929 287 MMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG-SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSA 365 (1221)
Q Consensus 287 m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~-~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~ 365 (1221)
|+.+++||||||||||||||||++|++|+||+.++++ +..|+++|+++||||||||||||++|+||||||||++|+|+
T Consensus 81 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~- 159 (677)
T cd01387 81 MLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE- 159 (677)
T ss_pred HHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-
Confidence 9999999999999999999999999999999998743 35799999999999999999999999999999999999995
Q ss_pred CCceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHH
Q 000929 366 FGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLME 445 (1221)
Q Consensus 366 ~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~ 445 (1221)
+|.|+||+|++|||||||||.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..+++.+|+++|..++.
T Consensus 160 ~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~ 239 (677)
T cd01387 160 GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRLLA 239 (677)
T ss_pred CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCC--CCcceecChHHHHHHHHhcCCCHHHHHHhhhhcEeecCCCeee
Q 000929 446 ALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN--ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIA 523 (1221)
Q Consensus 446 Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~--~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~i~ 523 (1221)
||+.|||+++++..||+|||||||||||+|...+. .+.+.+.+++.++.||.||||++++|.++||++++.+++|.+.
T Consensus 240 al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~ 319 (677)
T cd01387 240 AMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTETRREKIF 319 (677)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCceEe
Confidence 99999999999999999999999999999987542 2347788899999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCCCCcceEEEecccCcccCCCCChHHHHHhhhhHHHHHHHHH
Q 000929 524 KKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNR 603 (1221)
Q Consensus 524 ~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~ 603 (1221)
++++++||.++||+|||+||++||+|||.+||.+|.+. ....+||||||||||+|+.|||||||||||||+||++||+
T Consensus 320 ~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~--~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~ 397 (677)
T cd01387 320 TPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT--QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNK 397 (677)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999863 3467999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhcCCceeeccccChHHHHHHHhcCCCCcccccccccCCCCCchHHHHHHHHHHhCCCCCccCCC--CCc
Q 000929 604 HLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER--GRA 681 (1221)
Q Consensus 604 ~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~~--~~~ 681 (1221)
++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||||||.+|++||.+|++|++.++++|++|..++ ...
T Consensus 398 ~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~ 477 (677)
T cd01387 398 IVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPKMPLPE 477 (677)
T ss_pred HHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCCCCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998764 468
Q ss_pred eEEeecCcceeeeccccchhccCcchHHHHHHHhhchHHHH-HHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHH
Q 000929 682 FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQL 760 (1221)
Q Consensus 682 F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~Fk~qL 760 (1221)
|+|+||||+|+|+++|||+||+|.++++++++|.+|+++++ .+|.......+.++......|+...+..||+++|+.||
T Consensus 478 F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~~f~~sL 557 (677)
T cd01387 478 FTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAAKFQQSL 557 (677)
T ss_pred eEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999875 56754321111111111111222334579999999999
Q ss_pred HHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhhccccccccCCCh
Q 000929 761 FKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDP 840 (1221)
Q Consensus 761 ~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~ 840 (1221)
+.||++|++|+||||||||||..+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++||++|++......++
T Consensus 558 ~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~ 637 (677)
T cd01387 558 LDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALKLARPAP 637 (677)
T ss_pred HHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCcccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876544444
Q ss_pred HHH-HHHHHHhhcCCCcceeecceeeeeccchhhHhhhhh
Q 000929 841 LSI-SVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1221)
Q Consensus 841 ~~~-~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R 879 (1221)
... +..+++.++++...|++|+||||||.+++..||..|
T Consensus 638 ~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 638 GDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred HHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 444 467888888999999999999999999999999876
No 11
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=3.8e-179 Score=1645.88 Aligned_cols=669 Identities=41% Similarity=0.681 Sum_probs=618.8
Q ss_pred cCCcCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccC---CCCCchhhHHHHHH
Q 000929 208 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKV---MDSPHVYAIADTAY 284 (1221)
Q Consensus 208 ~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~---~~~PHiyavA~~Ay 284 (1221)
..++|||+.|++|||++|||+|+.||.+++||||+|+||||||||+++|+|+++++..|+++. ..|||||+||++||
T Consensus 6 ~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay 85 (692)
T cd01385 6 QREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAY 85 (692)
T ss_pred cCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence 457999999999999999999999999999999999999999999999999999999998876 23899999999999
Q ss_pred HhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCC---CccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEE
Q 000929 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG---SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1221)
Q Consensus 285 ~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~---~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1221)
+.|..+++||||||||||||||||++|++|+||+.+++. ..+|+++|+++||||||||||||++|+||||||||++|
T Consensus 86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l 165 (692)
T cd01385 86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQV 165 (692)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEE
Confidence 999999999999999999999999999999999998753 24799999999999999999999999999999999999
Q ss_pred EecCCCceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCCccccCCcchHHHHH
Q 000929 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1221)
Q Consensus 362 ~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1221)
+|+.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++++|.+..+|+||++++|...+++||+.+|.
T Consensus 166 ~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~ 245 (692)
T cd01385 166 NYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFE 245 (692)
T ss_pred EECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888899999999888778999999999
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCC---CCcceecChHHHHHHHHhcCCCHHHHHHhhhhcEeecC
Q 000929 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN---ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 518 (1221)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~---~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~ 518 (1221)
.++.||+.|||+++++..||+|||||||||||+|...++ ++.+.+.+.+.+..||.||||++++|.++||++++.++
T Consensus 246 ~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 325 (692)
T cd01385 246 RLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTV 325 (692)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeC
Confidence 999999999999999999999999999999999987532 45678889999999999999999999999999999999
Q ss_pred CCeeeecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCC--CCcceEEEecccCcccCCC-CChHHHHHhhhhH
Q 000929 519 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQ--CTGRSINILDIYGFESFKK-NSFEQFCINYANE 595 (1221)
Q Consensus 519 ~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~--~~~~~IgILDI~GFE~f~~-NsfEQLcINyaNE 595 (1221)
+|.++++++++||.++||+|||+||++||+|||.+||.+|.+... ....+||||||||||+|+. |||||||||||||
T Consensus 326 ~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNE 405 (692)
T cd01385 326 NETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANE 405 (692)
T ss_pred CCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999986432 2467999999999999999 9999999999999
Q ss_pred HHHHHHHHhhhhhhHhhhhhcCCceeeccccChHHHHHHHhcCCCCcccccccccCCCCCchHHHHHHHHHHhCCCCCcc
Q 000929 596 RLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFK 675 (1221)
Q Consensus 596 rLQ~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~ 675 (1221)
+||++||+++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||.+|++||++++++|++|.
T Consensus 406 kLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~~~~~ 485 (692)
T cd01385 406 QLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDNKYYE 485 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC--CCceEEeecCcceeeeccccchhccCcchHHHHHHHhhchHHHH-HHhhcccCCCCCCCCCCCCCCCCCcCccch
Q 000929 676 GER--GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSV 752 (1221)
Q Consensus 676 ~~~--~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV 752 (1221)
+++ ...|+|+||||+|+|+++|||+||+|.|+++++++|++|+++++ .+|............ .+.........||
T Consensus 486 ~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~--~~~~~~~~~~~tV 563 (692)
T cd01385 486 GPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAV--LRAAFRAMAAPSV 563 (692)
T ss_pred CCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccccccc--ccccccCccCCcH
Confidence 653 57899999999999999999999999999999999999999875 577543211100000 0000011234799
Q ss_pred HHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhhcccc
Q 000929 753 GTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLS 832 (1221)
Q Consensus 753 ~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~ 832 (1221)
+++|+.||++||++|++|+||||||||||..+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++||++|+|
T Consensus 564 ~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L~~ 643 (692)
T cd01385 564 SAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRILLP 643 (692)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCChHHHHHHHHHhhcCCCcceeecceeeeeccchhhHhhhhhh
Q 000929 833 EKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 880 (1221)
Q Consensus 833 ~~~~~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~ 880 (1221)
... ...++.|..||+.+++++..|++|+||||||.++...||....
T Consensus 644 ~~~--~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 644 KGA--QSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred ccc--cchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 643 2345679999999999999999999999999999999998654
No 12
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.4e-178 Score=1646.10 Aligned_cols=664 Identities=39% Similarity=0.665 Sum_probs=616.4
Q ss_pred cCCcCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCC-CCChHHHHHHhccCCC--CCchhhHHHHHH
Q 000929 208 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAY 284 (1221)
Q Consensus 208 ~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~-iY~~~~~~~y~~~~~~--~PHiyavA~~Ay 284 (1221)
.++||||+.|++|||++|||+|+.||.+++||||+|+||||||||+++| +|+++++..|+++... |||||+||+.||
T Consensus 3 ~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 82 (717)
T cd01382 3 KKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAY 82 (717)
T ss_pred CCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999998 9999999999988654 799999999999
Q ss_pred HhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCCCccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEEEec
Q 000929 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFS 364 (1221)
Q Consensus 285 ~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~ 364 (1221)
++|..+++||||||||||||||||++|++|+||+.++++...|+++|+++||||||||||||++|+||||||||++|+|+
T Consensus 83 ~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~ 162 (717)
T cd01382 83 RDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFN 162 (717)
T ss_pred HHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEEC
Confidence 99999999999999999999999999999999999987777899999999999999999999999999999999999999
Q ss_pred CCCceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCC-----------------
Q 000929 365 AFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSE----------------- 427 (1221)
Q Consensus 365 ~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~----------------- 427 (1221)
.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||+++.
T Consensus 163 ~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~~ 242 (717)
T cd01382 163 EKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQNR 242 (717)
T ss_pred CCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999752
Q ss_pred ---------ccccCCcchHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCCCC-c--ceecChHHHHHH
Q 000929 428 ---------CLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNEN-H--VEVIADEAVTTA 495 (1221)
Q Consensus 428 ---------~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~-~--~~~~~~~~l~~a 495 (1221)
|..++++||+.+|+.++.||++|||+++++..||+|||||||||||+|...++.+ . +...+.+.+..|
T Consensus 243 ~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~ 322 (717)
T cd01382 243 KSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYC 322 (717)
T ss_pred cccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecCCCHHHHHHH
Confidence 2345788999999999999999999999999999999999999999998754322 2 233467899999
Q ss_pred HHhcCCCHHHHHHhhhhcEee-----cCCCeeeecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCCCCcceEE
Q 000929 496 AMLMGCSSDELMLALSTHKIQ-----AGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSIN 570 (1221)
Q Consensus 496 A~LLGv~~~~L~~~L~~r~i~-----~~~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~Ig 570 (1221)
|.||||++++|.++|++|++. ++++.+.++++++||.++||+|||+||++||+|||.+||.+|.... ...+||
T Consensus 323 a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~--~~~~Ig 400 (717)
T cd01382 323 AELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET--SSNFIG 400 (717)
T ss_pred HHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCcEEE
Confidence 999999999999999999998 7789999999999999999999999999999999999999997643 457999
Q ss_pred EecccCcccCCCCChHHHHHhhhhHHHHHHHHHhhhhhhHhhhhhcCCceeeccccChHHHHHHHhcCCCCccccccccc
Q 000929 571 ILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEES 650 (1221)
Q Consensus 571 ILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~ 650 (1221)
||||||||+|+.|||||||||||||+||++|++++|..||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||
T Consensus 401 iLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~ 480 (717)
T cd01382 401 VLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEEN 480 (717)
T ss_pred EEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHhCCCCCccCCC------------CCceEEeecCcceeeeccccchhccCcchHHHHHHHhhch
Q 000929 651 NFPKATDLTFANKLKQHLGSNSCFKGER------------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCT 718 (1221)
Q Consensus 651 ~~p~~tD~~f~~kL~~~~~~~~~f~~~~------------~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~ 718 (1221)
.+|++||.+|++||++.+++|++|..++ ...|+|+||||+|+|+++|||+||+|.|+++++++|++|+
T Consensus 481 ~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~ 560 (717)
T cd01382 481 RLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESK 560 (717)
T ss_pred cCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCc
Confidence 9999999999999999999888875432 2579999999999999999999999999999999999999
Q ss_pred HHHH-HHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhh
Q 000929 719 CQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQ 797 (1221)
Q Consensus 719 ~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~Q 797 (1221)
++++ .+|.......... .+ ....+..||+++|+.||+.||++|++|+||||||||||..+.|+.||..+|++|
T Consensus 561 n~~i~~lf~~~~~~~~~~----~~--~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~Q 634 (717)
T cd01382 561 DKFLRSLFESSTNNNDTK----QK--AGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQ 634 (717)
T ss_pred hHHHHHHhcccccccccc----cc--ccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHH
Confidence 9875 5776432111000 00 012245799999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHhhcCCceecchhhhHHhhhccccccccCCChHHHHHHHHHhhcCCCcceeecceeeeeccchhhHhhh
Q 000929 798 FRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALED 877 (1221)
Q Consensus 798 Lr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~ 877 (1221)
|||+||||+|||+|.|||+|++|.+|++||++|++......|++..|+.||+.++++++.|++|+||||||.|+++.||.
T Consensus 635 Lr~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~ 714 (717)
T cd01382 635 LQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLVRLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQ 714 (717)
T ss_pred HHhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHH
Confidence 99999999999999999999999999999999998777677899999999999999999999999999999999999997
Q ss_pred hh
Q 000929 878 RR 879 (1221)
Q Consensus 878 ~R 879 (1221)
..
T Consensus 715 ~~ 716 (717)
T cd01382 715 IM 716 (717)
T ss_pred Hh
Confidence 53
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=5.1e-176 Score=1623.07 Aligned_cols=665 Identities=54% Similarity=0.870 Sum_probs=629.0
Q ss_pred CCCccCCcCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCCC--CCchhhHHH
Q 000929 204 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIAD 281 (1221)
Q Consensus 204 np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~ 281 (1221)
||+..++++||+.|++|||++||++|+.||.+++||||+|++|||||||+++|+|+++++..|+++... |||||+||+
T Consensus 1 np~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~ 80 (677)
T smart00242 1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIAD 80 (677)
T ss_pred CCcccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999988643 799999999
Q ss_pred HHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCC---CccHHHHHHhhhHHHHHhhcCccCCCCCCCccccE
Q 000929 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG---SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKL 358 (1221)
Q Consensus 282 ~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~---~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~ 358 (1221)
+||+.|+.+++||||||||||||||||++|++|+||+.++++ ...|+++|+++||||||||||||++|+||||||||
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~ 160 (677)
T smart00242 81 NAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKF 160 (677)
T ss_pred HHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchhee
Confidence 999999999999999999999999999999999999999875 35799999999999999999999999999999999
Q ss_pred EEEEecCCCceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCCccccCCcchHH
Q 000929 359 IEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQ 438 (1221)
Q Consensus 359 i~l~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~ 438 (1221)
++|+|+.+|+|+||+|.+||||||||+.|++||||||||||||+|++++++++|+|.++.+|+||++++|..++++||++
T Consensus 161 ~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~ 240 (677)
T smart00242 161 IEIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAE 240 (677)
T ss_pred EEEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCCCCc-ceecChHHHHHHHHhcCCCHHHHHHhhhhcEeec
Q 000929 439 NFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENH-VEVIADEAVTTAAMLMGCSSDELMLALSTHKIQA 517 (1221)
Q Consensus 439 ~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~-~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~ 517 (1221)
+|+.++.||+.|||+++++..||+|||||||||||+|...++++. ..+.+.+.++.||.||||+.++|.++|+++++.+
T Consensus 241 ~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 320 (677)
T smart00242 241 EFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELENAAELLGVDPEELEKALTKRKIKT 320 (677)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEe
Confidence 999999999999999999999999999999999999987654332 3478889999999999999999999999999999
Q ss_pred CCCeeeecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCCCCcceEEEecccCcccCCCCChHHHHHhhhhHHH
Q 000929 518 GKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERL 597 (1221)
Q Consensus 518 ~~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErL 597 (1221)
++|.+.+++++++|.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+|
T Consensus 321 ~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkL 399 (677)
T smart00242 321 GGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKD-GSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKL 399 (677)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEEEEEecccccccccCCHHHHHhHhhHHHH
Confidence 999999999999999999999999999999999999999998753 4568999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhHhhhhhcCCceeeccccChHHHHHHHhcCCCCcccccccccCCCCCchHHHHHHHHHHhCCCCCccCC
Q 000929 598 QQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGE 677 (1221)
Q Consensus 598 Q~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~ 677 (1221)
|++|++++|+.||++|++|||+|+.|+|.||++|||||+++|.|||++|||||.+|++||.+|++||++++++|++|..+
T Consensus 400 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~ 479 (677)
T smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKP 479 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ---CCCceEEeecCcceeeeccccchhccCcchHHHHHHHhhchHHHH-HHhhcccCCCCCCCCCCCCCCCCCcCccchH
Q 000929 678 ---RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVG 753 (1221)
Q Consensus 678 ---~~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~ 753 (1221)
.+..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|....... +...+..||+
T Consensus 480 ~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~-----------~~~~~~~tv~ 548 (677)
T smart00242 480 RKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNA-----------GSKKRFRTVG 548 (677)
T ss_pred CCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccc-----------cccCCCCcHH
Confidence 367899999999999999999999999999999999999999865 5776433110 0123457999
Q ss_pred HHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhhccccc
Q 000929 754 TKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE 833 (1221)
Q Consensus 754 ~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~ 833 (1221)
++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||++||+|.|||+|++|.+|+.||++|++.
T Consensus 549 ~~fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~ 628 (677)
T smart00242 549 SQFKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPD 628 (677)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccc--CCChHHHHHHHHHhhcCCCcceeecceeeeeccchhhHhhhhhh
Q 000929 834 KQL--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 880 (1221)
Q Consensus 834 ~~~--~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~ 880 (1221)
... ..|+++.|+.||+.++++...|++|+||||||.+++..||..|+
T Consensus 629 ~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 629 TWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred cccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 544 34689999999999999999999999999999999999999874
No 14
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.4e-176 Score=1505.12 Aligned_cols=720 Identities=38% Similarity=0.641 Sum_probs=662.0
Q ss_pred cCCcCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCCC--CCchhhHHHHHHH
Q 000929 208 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYN 285 (1221)
Q Consensus 208 ~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~ 285 (1221)
--||+|++-|+.++|++++.||+.||..+.||||+|+|||+||||+.++||++++|+.|++...- |||+||||+.||+
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYr 86 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAIADAAYR 86 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHhHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999998864 8999999999999
Q ss_pred hhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCCC-----ccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEE
Q 000929 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS-----EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIE 360 (1221)
Q Consensus 286 ~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~-----~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~ 360 (1221)
.|.+..+||||+|||||||||||++|+||+|+|++.+.+ ..+.+.+|+|||||||||||||.||||||||||||.
T Consensus 87 slk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMD 166 (1001)
T KOG0164|consen 87 SLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMD 166 (1001)
T ss_pred HHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhccee
Confidence 999999999999999999999999999999999997653 246778999999999999999999999999999999
Q ss_pred EEecCCCceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCC-CCCCCCCcccCCCccccCCcchHHH
Q 000929 361 IHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNL-KVANDYNYLNQSECLTIDGVDDAQN 439 (1221)
Q Consensus 361 l~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L-~~~~~y~yL~~~~~~~~~~~dD~~~ 439 (1221)
|.||-.|.-+|+.|..|||||||||.|.+||||||||||||.|+++.+..+|+| +++..|+||+++ |..+.+++|+.+
T Consensus 167 InFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~d 245 (1001)
T KOG0164|consen 167 INFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDASD 245 (1001)
T ss_pred eeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHHH
Confidence 999999999999999999999999999999999999999999999999999999 589999999998 888999999999
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCCCCcceecChHHHHHHHHhcCCCHHHHHHhhhhcEeecCC
Q 000929 440 FHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGK 519 (1221)
Q Consensus 440 f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~ 519 (1221)
|..+.+||.+|||+++|++++|+|+|||||||||.|...+ +..-+++...+..+|+||++..++|.++|+.|++.+++
T Consensus 246 fk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~~~l~~~aell~v~~del~~aL~~Rtvaa~~ 323 (1001)
T KOG0164|consen 246 FKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNGAQLKYIAELLSVTGDELERALTSRTVAAGG 323 (1001)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999998643 33344555889999999999999999999999999999
Q ss_pred CeeeecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCC----CCcceEEEecccCcccCCCCChHHHHHhhhhH
Q 000929 520 DSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQ----CTGRSINILDIYGFESFKKNSFEQFCINYANE 595 (1221)
Q Consensus 520 e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~----~~~~~IgILDI~GFE~f~~NsfEQLcINyaNE 595 (1221)
|.+.+++|++||.++||||||++|+|||.|||.+||.++.+... .....||+|||||||+|+.|||||||||||||
T Consensus 324 e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcINYCNE 403 (1001)
T KOG0164|consen 324 EIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCINYCNE 403 (1001)
T ss_pred chhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987431 22368999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHhhhhhcCCceeeccccChHHHHHHHhcCCCCcccccccccCCCC-CchHHHHHHHHHHhCCCCCc
Q 000929 596 RLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPK-ATDLTFANKLKQHLGSNSCF 674 (1221)
Q Consensus 596 rLQ~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~-~tD~~f~~kL~~~~~~~~~f 674 (1221)
+|||.|++-+++.|||||..|||+|+.|+|-+|.-++||+|.+..|||+||||||..|+ .||.+|+++|.+++++|++|
T Consensus 404 KLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~H~Hy 483 (1001)
T KOG0164|consen 404 KLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKKHPHY 483 (1001)
T ss_pred HHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999886 69999999999999999999
Q ss_pred cCCC---------CCceEEeecCcceeeeccccchhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCCCC
Q 000929 675 KGER---------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPGA 744 (1221)
Q Consensus 675 ~~~~---------~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~g~ 744 (1221)
.+.. -.+|.|.||||+|+|+|.||++||+|.|-.|+..+|..|++++ ..+|.........
T Consensus 484 ~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~---------- 553 (1001)
T KOG0164|consen 484 TSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAE---------- 553 (1001)
T ss_pred hhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHh----------
Confidence 6421 3689999999999999999999999999999999999999986 4577532110000
Q ss_pred CCcCccchHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhH
Q 000929 745 LDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFA 824 (1221)
Q Consensus 745 ~~~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~ 824 (1221)
...+-.|++++|+.++..||..|.+.+|+||||||||+.+.|+.||...|.+|.+|+|+||-+|++|+||.+|.+|+.|+
T Consensus 554 ~tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL 633 (1001)
T KOG0164|consen 554 VTKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFL 633 (1001)
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHH
Confidence 01233689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhcccccccc---CCChHHHHHHHHHhhcCCCcceeecceeeeecc-chhhHhhhhhhhhHH-HHHHHHHHHhHHHHh
Q 000929 825 GRYGVLLSEKQL---SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRS-GQLAALEDRRKQVLQ-AIIRLQKCFRGYQAR 899 (1221)
Q Consensus 825 ~RY~~L~~~~~~---~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~-g~l~~LE~~R~~~l~-Aai~IQa~~Rg~laR 899 (1221)
.||+++.+..++ ..+.++.|..+++..++. .++.+|+||||+|. ..+..||++|..++. -++.||++||||++|
T Consensus 634 ~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~-~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R 712 (1001)
T KOG0164|consen 634 LRYKMICESTWPNWRGGSDKDGVKVLLEHLGLA-GDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLAR 712 (1001)
T ss_pred HHHHhhCcccCCCCCCCCchhHHHHHHHHhccc-hhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988776 345577888899988876 88999999999997 578999999988876 467899999999999
Q ss_pred HhhhhhhhchhhhhhhhhhHHHHHHHHHhhhhhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000929 900 SRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1221)
Q Consensus 900 k~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~AAi~IQ~~~~~~~~aai~IQs~~Rg~laRR~~~ 964 (1221)
.+|++++++++.|+ |||.+..+ ..+..||..+||+.++|.|.
T Consensus 713 ~ry~rmka~~~ii~-wyR~~K~k----------------------s~v~el~~~~rg~k~~r~yg 754 (1001)
T KOG0164|consen 713 QRYRRMKASATIIR-WYRRYKLK----------------------SYVQELQRRFRGAKQMRDYG 754 (1001)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHH----------------------HHHHHHHHHHHhhhhccccC
Confidence 99999999999998 88843322 35677899999999888876
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=6.1e-175 Score=1597.44 Aligned_cols=635 Identities=40% Similarity=0.670 Sum_probs=595.3
Q ss_pred CcCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCCC--CCchhhHHHHHHHhh
Q 000929 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1221)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1221)
++|||+.|++|||++|||+|+.||.+++||||+|+||||||||+++|+|+++++..|+++... |||||+||+.||+.|
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSL 80 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999886543 899999999999999
Q ss_pred hhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCC-CccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEEEecCC
Q 000929 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG-SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAF 366 (1221)
Q Consensus 288 ~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~-~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~ 366 (1221)
...++||||||||||||||||++|++|+||+.++++ ...|+++|+++||||||||||||++|+||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~ 160 (653)
T cd01379 81 VTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRS 160 (653)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCC
Confidence 999999999999999999999999999999998754 3479999999999999999999999999999999999999999
Q ss_pred CceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhH-hhcCCCCCCCCCcccCCCccccCCcc----hHHHHH
Q 000929 367 GKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLK-ERLNLKVANDYNYLNQSECLTIDGVD----DAQNFH 441 (1221)
Q Consensus 367 g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r-~~l~L~~~~~y~yL~~~~~~~~~~~d----D~~~f~ 441 (1221)
|+|+||+|++||||||||++|++||||||||||||+|++++++ +.|+|.+...|+||++++|..+++++ |+.+|.
T Consensus 161 g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~ 240 (653)
T cd01379 161 GAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYKDQFE 240 (653)
T ss_pred CcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHHHHHH
Confidence 9999999999999999999999999999999999999998776 78999988999999999887666654 578999
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCC---CCcceecChHHHHHHHHhcCCCHHHHHHhhhhcEeecC
Q 000929 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN---ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 518 (1221)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~---~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~ 518 (1221)
.++.||++|||+++++..||+|||||||||||+|...++ .+.+.+.+.+.++.||.||||+.++|.++|+++++.++
T Consensus 241 ~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ 320 (653)
T cd01379 241 QIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSHCVVTR 320 (653)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 999999999999999999999999999999999987543 23567889999999999999999999999999999999
Q ss_pred CCeeeecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCC----CCcceEEEecccCcccCCCCChHHHHHhhhh
Q 000929 519 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQ----CTGRSINILDIYGFESFKKNSFEQFCINYAN 594 (1221)
Q Consensus 519 ~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~----~~~~~IgILDI~GFE~f~~NsfEQLcINyaN 594 (1221)
++.+.++++++||.++||||||+||++||+|||.+||.+|.+... ....+||||||||||+|+.||||||||||||
T Consensus 321 ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaN 400 (653)
T cd01379 321 GETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCINIAN 400 (653)
T ss_pred CceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHHHHhhhhH
Confidence 999999999999999999999999999999999999999987432 2457999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHhhhhhcCCceeeccccChHHHHHHHhcCCCCcccccccccCCCCCchHHHHHHHHHHhCCCCCc
Q 000929 595 ERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCF 674 (1221)
Q Consensus 595 ErLQ~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f 674 (1221)
|+||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||.+|++||+.++++ +.|
T Consensus 401 EkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~~~~-~~~ 479 (653)
T cd01379 401 EQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDNLKS-KFF 479 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988865 445
Q ss_pred cCC--CCCceEEeecCcceeeeccccchhccCcchHHHHHHHhhchHHHHHHhhcccCCCCCCCCCCCCCCCCCcCccch
Q 000929 675 KGE--RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFASKMLKPSPKPAASSQPGALDTQKQSV 752 (1221)
Q Consensus 675 ~~~--~~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV 752 (1221)
..+ ....|+|+||||+|+|+++||++||+|.|+.+++++|++| +||
T Consensus 480 ~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S--------------------------------~tv 527 (653)
T cd01379 480 WRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS--------------------------------QTV 527 (653)
T ss_pred cCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC--------------------------------cHH
Confidence 443 2578999999999999999999999999999999998765 379
Q ss_pred HHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhhcccc
Q 000929 753 GTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLS 832 (1221)
Q Consensus 753 ~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~ 832 (1221)
+++|+.||.+||++|.+|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++
T Consensus 528 ~~~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~ 607 (653)
T cd01379 528 ASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAY 607 (653)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccc-CCChHHHHHHHHHhhcCCCcceeecceeeeeccchhhHhhhhh
Q 000929 833 EKQL-SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1221)
Q Consensus 833 ~~~~-~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R 879 (1221)
.... ..+.+..|..||+.+++ ++|++|+||||||.++...||.+|
T Consensus 608 ~~~~~~~~~~~~~~~il~~~~~--~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 608 RFEEEPVSSPESCALILEKAKL--DNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred ccccccCChHHHHHHHHHhCCC--CCEEecceEEEEecCHHHHHHhcC
Confidence 6533 34678899999998776 579999999999999999999865
No 16
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=4e-174 Score=1610.25 Aligned_cols=669 Identities=50% Similarity=0.813 Sum_probs=620.6
Q ss_pred CcCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCCC--CCchhhHHHHHHHhh
Q 000929 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1221)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1221)
+++||+.|++|||++|||+|+.||.+++||||+|++|||||||+++|+|+++++..|+++... |||||+||++||+.|
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m 80 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNM 80 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999987654 899999999999999
Q ss_pred hhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCC-CccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEEEecCC
Q 000929 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG-SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAF 366 (1221)
Q Consensus 288 ~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~-~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~ 366 (1221)
+.+++||||||||||||||||++|++|+||+.++++ ...|+++|+++||||||||||||++|+||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~ 160 (679)
T cd00124 81 LRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDET 160 (679)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCC
Confidence 999999999999999999999999999999999875 4579999999999999999999999999999999999999999
Q ss_pred CceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHHH
Q 000929 367 GKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEA 446 (1221)
Q Consensus 367 g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~A 446 (1221)
|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|+++.+|+||++++|..++++||+++|..++.|
T Consensus 161 g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~a 240 (679)
T cd00124 161 GKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEA 240 (679)
T ss_pred CcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HhhcCCChhhHHHHHHHHHHHHHhcCceeeecCCCCc--ceecChHHHHHHHHhcCCCHHHHHHhhhhcEeecCCCeeee
Q 000929 447 LDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENH--VEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAK 524 (1221)
Q Consensus 447 l~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~--~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~i~~ 524 (1221)
|+.|||+++++..||+|||||||||||+|...++++. +.+.+.+.++.||.||||+.++|.++|+++++.++++.+.+
T Consensus 241 l~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~ 320 (679)
T cd00124 241 LKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEVITI 320 (679)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCceEEe
Confidence 9999999999999999999999999999997655443 77889999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCCCCcceEEEecccCcccCCCCChHHHHHhhhhHHHHHHHHHh
Q 000929 525 KLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRH 604 (1221)
Q Consensus 525 ~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~~ 604 (1221)
+++++||.++||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||+||++|+++
T Consensus 321 ~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~ 399 (679)
T cd00124 321 PLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPK-DGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQH 399 (679)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999874 235689999999999999999999999999999999999999
Q ss_pred hhhhhHhhhhhcCCceeeccccChHHHHHHHhcCCCCcccccccccCCCCCchHHHHHHHHHHhCCCCCccCC---CCCc
Q 000929 605 LFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGE---RGRA 681 (1221)
Q Consensus 605 iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~---~~~~ 681 (1221)
+|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||.+|++||.+|++||++++++|++|... .+..
T Consensus 400 ~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~~ 479 (679)
T cd00124 400 VFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAKKNAPTE 479 (679)
T ss_pred HHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986322 3579
Q ss_pred eEEeecCcceeeeccccchhccCcchHHHHHHHhhchHHHH-HHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHH
Q 000929 682 FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQL 760 (1221)
Q Consensus 682 F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~Fk~qL 760 (1221)
|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|.......+..+......+....+..||+++|+.||
T Consensus 480 F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~qL 559 (679)
T cd00124 480 FTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGSQFRTSL 559 (679)
T ss_pred eEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999865 57754322111100000111112345689999999999
Q ss_pred HHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhhccccccccCC-C
Q 000929 761 FKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQ-D 839 (1221)
Q Consensus 761 ~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~-d 839 (1221)
+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++...... .
T Consensus 560 ~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~~~~~~~ 639 (679)
T cd00124 560 DALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDLLEKVSL 639 (679)
T ss_pred HHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCcccccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998765432 2
Q ss_pred hHHHHHHHHHhhcCCCcceeecceeeeeccchhhHhhhhh
Q 000929 840 PLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1221)
Q Consensus 840 ~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R 879 (1221)
....|..+|+.++++...|++|+||||||.+++..||.+|
T Consensus 640 ~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 640 TKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred cHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 2334899999999999999999999999999999999865
No 17
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=6.3e-173 Score=1598.19 Aligned_cols=666 Identities=30% Similarity=0.474 Sum_probs=593.2
Q ss_pred cCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCCC--CCchhhHHHHHHHhhh
Q 000929 211 VDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMM 288 (1221)
Q Consensus 211 ~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~ 288 (1221)
||||+.|++|||++|||+|+.||.+++||||+|++|||||||+.+|+|+++++..|+++... |||||+||+.||+.|.
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~ 81 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALL 81 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999988654 8999999999999999
Q ss_pred hCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCCCc--cHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEEEecCC
Q 000929 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSE--GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAF 366 (1221)
Q Consensus 289 ~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~~--~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~ 366 (1221)
.+++||||||||||||||||++|++|+|||.++++.+ ...++|+++||||||||||||++||||||||||++|+|+.+
T Consensus 82 ~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~ 161 (767)
T cd01386 82 ETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDGRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQT 161 (767)
T ss_pred HcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCcccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCC
Confidence 9999999999999999999999999999999987532 23467999999999999999999999999999999999999
Q ss_pred CceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCC-ccccCCcchHHHHHHHHH
Q 000929 367 GKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSE-CLTIDGVDDAQNFHNLME 445 (1221)
Q Consensus 367 g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~-~~~~~~~dD~~~f~~l~~ 445 (1221)
|.|+||+|++|||||||||.|++||||||||||||+|++++++++|+|.+...+.++.... +...++++|+++|..++.
T Consensus 162 g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~~~~ 241 (767)
T cd01386 162 GQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQ 241 (767)
T ss_pred CcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998755443333222 334677899999999999
Q ss_pred HHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCCCCcceecChHHHHHHHHhcCCCHHHHHHhhhhcEeecCCC-----
Q 000929 446 ALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKD----- 520 (1221)
Q Consensus 446 Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e----- 520 (1221)
||++|||+++++..||+|||||||||||+|... .+.+.+.+.+.++.||.||||+.++|.++|+++++.++.+
T Consensus 242 Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~--~~~~~~~~~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~~~~ 319 (767)
T cd01386 242 AMEVLGISEGEQRAIWRVLAAIYHLGAAGATKV--AGRKQFARPEWAQKAAELLGCPLEELSSATFKHTLRGGINQMTTG 319 (767)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhccCceeeec--CCccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEeecceeeecc
Confidence 999999999999999999999999999999862 3446788899999999999999999999999988876643
Q ss_pred --------eeeecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCCCCcceEEEecccCcccCCC------CChH
Q 000929 521 --------SIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKK------NSFE 586 (1221)
Q Consensus 521 --------~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~------NsfE 586 (1221)
.+..++++.||.++||||||+||++||+|||.+||.+|.... ....+||||||||||+|+. ||||
T Consensus 320 ~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IgiLDIfGFE~f~~n~~~~~NsfE 398 (767)
T cd01386 320 PQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSH-HSIASIMLVDTPGFQNPASQGKDRAATFE 398 (767)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcEEEEEecccccccccccccCCCCHH
Confidence 233467889999999999999999999999999999998753 3457999999999999984 8999
Q ss_pred HHHHhhhhHHHHHHHHHhhhhhhHhhhhhcCCceeeccc-cChHHHHHHHhcCC--------------CCcccccccccC
Q 000929 587 QFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIEKKP--------------LGVLSLLDEESN 651 (1221)
Q Consensus 587 QLcINyaNErLQ~~f~~~iF~~eq~eY~~EgI~~~~i~f-~dn~~~ldLie~~p--------------~Gil~lLDeE~~ 651 (1221)
|||||||||+|||+||+++|+.||++|.+|||+|+.+++ .||++||+||+++| .|||++|||||+
T Consensus 399 QLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~ 478 (767)
T cd01386 399 ELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEAL 478 (767)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhc
Confidence 999999999999999999999999999999999987655 69999999999865 599999999999
Q ss_pred CCCCchHHHHHHHHHHhCCCCCccC--------CCCCceEEeecCcc--eeeeccccchhccCcc-hHHHHHHHhhchHH
Q 000929 652 FPKATDLTFANKLKQHLGSNSCFKG--------ERGRAFSIRHYAGE--VPYDTNGFLEKNRDPL-QTDIIQLLSSCTCQ 720 (1221)
Q Consensus 652 ~p~~tD~~f~~kL~~~~~~~~~f~~--------~~~~~F~I~HyaG~--V~Y~~~gfleKNrD~l-~~d~~~ll~~S~~~ 720 (1221)
+|++||.+|++||++++++|++|.. .....|+|+||||+ |+|+++|||+||+|.+ ..+++++|++|+++
T Consensus 479 ~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~~S~~~ 558 (767)
T cd01386 479 VPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQDSKRE 558 (767)
T ss_pred CCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHHhCCcH
Confidence 9999999999999999998888754 12468999999995 9999999999999965 68999999999987
Q ss_pred H-HHHhhcccCC------C-------CCCC---CCC-CCC---CCCCcCccchHHHHHHHHHHHHHHHcccCCeeEEecC
Q 000929 721 V-LQLFASKMLK------P-------SPKP---AAS-SQP---GALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIK 779 (1221)
Q Consensus 721 l-~~lf~~~~~~------~-------~~~~---~~~-~~~---g~~~~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIk 779 (1221)
+ ..+|...... . +..+ ..+ ++. ++...++.||+++|+.||+.||++|++|+||||||||
T Consensus 559 ~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phfIRCIK 638 (767)
T cd01386 559 EINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHFVHCYL 638 (767)
T ss_pred HHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCeeEEEeC
Confidence 5 5688543210 0 0000 000 000 0112346799999999999999999999999999999
Q ss_pred CCCCCC----------------------CCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhhcccccccc-
Q 000929 780 PNSKQL----------------------PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL- 836 (1221)
Q Consensus 780 PN~~~~----------------------p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~- 836 (1221)
||+.+. |+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||++|.+....
T Consensus 639 PN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~~~~~~ 718 (767)
T cd01386 639 PQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAEGLTKK 718 (767)
T ss_pred ccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhChhhccc
Confidence 999873 789999999999999999999999999999999999999999999876432
Q ss_pred ------CCChHHHHHHHHHhhcCCCcceeecceeeeeccchhhHhhhhh
Q 000929 837 ------SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1221)
Q Consensus 837 ------~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R 879 (1221)
..|++..|..||+.++++++.|++|+||||||.+++..||..|
T Consensus 719 ~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 719 VGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 3588999999999999999999999999999999999999876
No 18
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.1e-170 Score=1460.38 Aligned_cols=739 Identities=39% Similarity=0.637 Sum_probs=676.5
Q ss_pred CcEEEEEcCCCCEEEEEEEEeeCCeEEEEec--CCeEEEEeCCCccCCCCCccCCcCCccccccCCchhHHHHHHHHhhc
Q 000929 158 KLRVWCRLEDGKWESGMIQSTSGDEAFVLLS--NGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSR 235 (1221)
Q Consensus 158 ~~~vW~~~~~~~~~~~~i~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~ 235 (1221)
+..||++|+.++|..|.|+.+..++.+++.- .|.+++---+|+.++..+...+|||-|.|-||||+.+|+|++.||.+
T Consensus 4 gr~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD~~k~veDNC~Lm~LNEATlL~Nik~RY~k 83 (1259)
T KOG0163|consen 4 GRLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEEDSPKDVEDNCELMHLNEATLLNNIKLRYYK 83 (1259)
T ss_pred CceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccccccccccccceeeccHHHHhhhhhhhhcc
Confidence 5689999999999999999999999998653 67888888899999988888899999999999999999999999999
Q ss_pred CccccccCCceEeeCCCCCCC-CCChHHHHHHhccCCC--CCchhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHH
Q 000929 236 DMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF 312 (1221)
Q Consensus 236 ~~iYT~~G~iLiaVNP~k~l~-iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~ 312 (1221)
|.||||+.+||||||||+.++ +|+++.|..|++++.+ ||||||||+.||+.|..-+.+||||+||||||||||++|.
T Consensus 84 ~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~ 163 (1259)
T KOG0163|consen 84 DKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTESTKA 163 (1259)
T ss_pred CchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchhHHH
Confidence 999999999999999999997 9999999999999876 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEEEecCCCceeeeeeeeeeccCceeeecCCCCC
Q 000929 313 AMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGER 392 (1221)
Q Consensus 313 il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~tyLLEksRVv~q~~gER 392 (1221)
+|+||+.--|+.+.|+.+||.+||||||||||||+||+||||||||++|||+.+|.++|+-|.+||||||||+.|+.+||
T Consensus 164 vLrYLces~gsag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC~Qaa~ER 243 (1259)
T KOG0163|consen 164 VLRYLCESWGSAGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRICRQAAEER 243 (1259)
T ss_pred HHHHHHhccCCCCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHHHhhhccc
Confidence 99999998777779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCCcc---------------------------ccCCcchHHHHHHHHH
Q 000929 393 SYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECL---------------------------TIDGVDDAQNFHNLME 445 (1221)
Q Consensus 393 nfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~---------------------------~~~~~dD~~~f~~l~~ 445 (1221)
||||||||++|++++++++|.|..+++|+||+.+ |. .-+-+||..+|..+..
T Consensus 244 NYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG-~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~dF~rl~~ 322 (1259)
T KOG0163|consen 244 NYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRG-CTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQDFHRLEK 322 (1259)
T ss_pred chhHHHHHHcCCCHHHHHHhccCCchhhhHHhcc-hhhhccCcchhhcCcccccCccccccCcccCcccccHHHHHHHHH
Confidence 9999999999999999999999999999999854 32 1123689999999999
Q ss_pred HHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCCC--Ccceec--ChHHHHHHHHhcCCCHHHHHHhhhhcEeecC---
Q 000929 446 ALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNE--NHVEVI--ADEAVTTAAMLMGCSSDELMLALSTHKIQAG--- 518 (1221)
Q Consensus 446 Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~--~~~~~~--~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~--- 518 (1221)
||+.+|++++|...||+++|||||||||+|+...++ +.|.+. +...|..+|+|||++.++|...||.|.+.+.
T Consensus 323 Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG 402 (1259)
T KOG0163|consen 323 ALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGG 402 (1259)
T ss_pred HHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999976532 345554 5678999999999999999999999988753
Q ss_pred --CCeeeecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCCCCcceEEEecccCcccCCCCChHHHHHhhhhHH
Q 000929 519 --KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANER 596 (1221)
Q Consensus 519 --~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNEr 596 (1221)
|..|.+||.+.+|..+||||||++|++||||||.+||+++-.. .+..+||||||.|||.|.+|||||||||||||+
T Consensus 403 ~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe--~St~fiGVLDiAGFEyf~~NSFEQFCINyCNEK 480 (1259)
T KOG0163|consen 403 FKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE--KSTFFIGVLDIAGFEYFAVNSFEQFCINYCNEK 480 (1259)
T ss_pred ccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc--cccceeEEEeeccceeeecccHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999753 356799999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhHhhhhhcCCceeeccccChHHHHHHHhcCCCCcccccccccCCCCCchHHHHHHHHHHhCCCCCccC
Q 000929 597 LQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKG 676 (1221)
Q Consensus 597 LQ~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~ 676 (1221)
||+|||+.|++.||+.|..||+....|.|.||++||+|||.+..|||.|||||..+|+.++..|....++.+..|-+...
T Consensus 481 LQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~ 560 (1259)
T KOG0163|consen 481 LQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDL 560 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776644432
Q ss_pred CC------------CCceEEeecCcceeeeccccchhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCCC
Q 000929 677 ER------------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPG 743 (1221)
Q Consensus 677 ~~------------~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~g 743 (1221)
|| ...|.|+||||.|.|++.-|+|||.|.|+..+-.|+..|++++ +.||.+...+. .++ ..|
T Consensus 561 PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~-a~~----~~g 635 (1259)
T KOG0163|consen 561 PRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTS-AKQ----TRG 635 (1259)
T ss_pred CchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCc-ccc----ccc
Confidence 21 4579999999999999999999999999999999999999986 67897543221 111 111
Q ss_pred CCCcCccchHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhh
Q 000929 744 ALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEF 823 (1221)
Q Consensus 744 ~~~~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF 823 (1221)
..+..||+.+|+.||..||+.|++|..|||||||||..+.+..||...++.||.|+|+..++++.+.|||.|..|.+.
T Consensus 636 --kL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dL 713 (1259)
T KOG0163|consen 636 --KLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADL 713 (1259)
T ss_pred --eeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHH
Confidence 345579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccccccCCChHHHHHHHHHhhcCCCcceeecceeeeeccchhhHhhhhhhhhHHHHHHHHHHHhHHHHhHhhh
Q 000929 824 AGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQAIIRLQKCFRGYQARSRFR 903 (1221)
Q Consensus 824 ~~RY~~L~~~~~~~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~~~l~Aai~IQa~~Rg~laRk~y~ 903 (1221)
+.-|.-.+|+.....||+-.|.++.+.++++..+|++|.|||||+.|.++...+..+..-...+.|-+.+--|+.|.+|+
T Consensus 714 YamYkk~lPpkLarLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~kVn~WLv~sRWk 793 (1259)
T KOG0163|consen 714 YAMYKKVLPPKLARLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAKVNKWLVRSRWK 793 (1259)
T ss_pred HHHHHhhCCHhhhcCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999888877666666666666667788888776
Q ss_pred hhh
Q 000929 904 ELC 906 (1221)
Q Consensus 904 ~lr 906 (1221)
+..
T Consensus 794 k~q 796 (1259)
T KOG0163|consen 794 KSQ 796 (1259)
T ss_pred Hhh
Confidence 653
No 19
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=7.7e-171 Score=1462.33 Aligned_cols=706 Identities=39% Similarity=0.658 Sum_probs=658.4
Q ss_pred ccCCcCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCCC--CCchhhHHHHHH
Q 000929 207 ILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAY 284 (1221)
Q Consensus 207 ~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay 284 (1221)
...|||||+-|+-++|.+|..||+.||..+.||||+|+|||+||||+.+|+|+++.|..|+++... ||||||+|+++|
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladnmY 95 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADNMY 95 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHHHH
Confidence 356899999999999999999999999999999999999999999999999999999999998764 899999999999
Q ss_pred HhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCCC---ccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEE
Q 000929 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS---EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1221)
Q Consensus 285 ~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~---~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1221)
++|..+.+|||||||||||||||+++|.||+|++.++++. +.|.+-||++||+|||||||||+||+||||||||++|
T Consensus 96 ~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei 175 (1106)
T KOG0162|consen 96 RNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEI 175 (1106)
T ss_pred HHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEEE
Confidence 9999999999999999999999999999999999998764 3577889999999999999999999999999999999
Q ss_pred EecCCCceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCCccccCCcchHHHHH
Q 000929 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1221)
Q Consensus 362 ~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1221)
+|+..|.-+|++|.+|||||+|||.|.+|||||||||||+.||+.+.|..|++..++.|.||+.++|+.++++||..+|+
T Consensus 176 ~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdfq 255 (1106)
T KOG0162|consen 176 QFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDFQ 255 (1106)
T ss_pred EecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCCCCcceecChHHHHHHHHhcCCCHHHHHHhhhhcEeecC---
Q 000929 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG--- 518 (1221)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~--- 518 (1221)
.++.||+++||.++||+.||++||+|||||||.|.+. ++.+.+.+.+.++-.|.||||+...|.+.||.|.|...
T Consensus 256 ~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee--~~~a~V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G~ 333 (1106)
T KOG0162|consen 256 ETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEE--GNYAAVSDKSVLEFPAYLLGIDSARLEEKLTSRIMESKWGG 333 (1106)
T ss_pred HHHHHheeccCChHHHHHHHHHHHHHHhccceeEEee--CCcceeccchHHHhHHHHhcCCHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999973 45677888889999999999999999999999998753
Q ss_pred -CCeeeecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCCCCcceEEEecccCcccCCCCChHHHHHhhhhHHH
Q 000929 519 -KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERL 597 (1221)
Q Consensus 519 -~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErL 597 (1221)
.+.+..+|+++||...||||||+||.+||||||++||.++.....+...+||||||||||+|++||||||||||.||+|
T Consensus 334 kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKL 413 (1106)
T KOG0162|consen 334 KREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFVNEKL 413 (1106)
T ss_pred cceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999865555678999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhHhhhhhcCCceeeccccChHHHHHHHhc-CCCCcccccccccCCC----CCchHHHHHHHHHHhCCCC
Q 000929 598 QQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEK-KPLGVLSLLDEESNFP----KATDLTFANKLKQHLGSNS 672 (1221)
Q Consensus 598 Q~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~-~p~Gil~lLDeE~~~p----~~tD~~f~~kL~~~~~~~~ 672 (1221)
||.|++-+++.|||||.+|||.|++|+|-||.-++||||. +|.||+++|||-|... .|-|.+|+.+|...+++||
T Consensus 414 QQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~p 493 (1106)
T KOG0162|consen 414 QQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHP 493 (1106)
T ss_pred HHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999984 6899999999999643 4679999999999999999
Q ss_pred CccCCCCCceEEeecCcceeeeccccchhccCcchHHHHHHHhhchHHHH-HHhhcccCCCCCCCCCCCCCCCCCcCccc
Q 000929 673 CFKGERGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQS 751 (1221)
Q Consensus 673 ~f~~~~~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~t 751 (1221)
+|.. +...|+|+||||+|+||++||.+||||.|..|++.|+.+|.++|. .+|......++.+ +-+|
T Consensus 494 hF~~-~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~dskr------------RP~T 560 (1106)
T KOG0162|consen 494 HFES-RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDADSKR------------RPPT 560 (1106)
T ss_pred cccc-ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhcccccC------------CCCC
Confidence 9975 367899999999999999999999999999999999999999875 4675443222211 2267
Q ss_pred hHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhhccc
Q 000929 752 VGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLL 831 (1221)
Q Consensus 752 V~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~ 831 (1221)
.+.+.+.|-++|+++|..|.||||||||||..|.|+.||...|++|+.|+|+-|-|||+|+||.+|..|+.|+.||.+|.
T Consensus 561 ag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyails 640 (1106)
T KOG0162|consen 561 AGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILS 640 (1106)
T ss_pred chhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc--CCChHHHHHHHHHhhcCCCcceeecceeeeecc-chhhHhhhhhhhhHHH-HHHHHHHHhHHHHhHhhhhhhh
Q 000929 832 SEKQL--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRS-GQLAALEDRRKQVLQA-IIRLQKCFRGYQARSRFRELCN 907 (1221)
Q Consensus 832 ~~~~~--~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~-g~l~~LE~~R~~~l~A-ai~IQa~~Rg~laRk~y~~lr~ 907 (1221)
|..++ ..|.+.+|..||+..+++.++||+|.||||++. ..+..||++|++.+.. |.+||++||.|.+|++|.++|.
T Consensus 641 p~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~re 720 (1106)
T KOG0162|consen 641 PQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMRE 720 (1106)
T ss_pred cccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98876 468899999999999999999999999999997 5789999999999875 7799999999999999999998
Q ss_pred chhhhhhhhhhHHHHHHHHHhhh
Q 000929 908 GVITLQSFARGENTRRRHASLGK 930 (1221)
Q Consensus 908 aai~IQs~~Rg~~aRr~y~~lr~ 930 (1221)
-+..| .-|...||+|--+|.
T Consensus 721 e~t~l---l~gKKeRRr~Si~R~ 740 (1106)
T KOG0162|consen 721 EATKL---LLGKKERRRYSINRN 740 (1106)
T ss_pred HHHHH---hcchHHHHHHHHHHH
Confidence 76654 457778887765543
No 20
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.2e-169 Score=1534.04 Aligned_cols=740 Identities=52% Similarity=0.847 Sum_probs=694.8
Q ss_pred CCCCccCCcCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCC-CCChHHHHHHh-ccCCCCCchhhHH
Q 000929 203 ANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYR-QKVMDSPHVYAIA 280 (1221)
Q Consensus 203 ~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~-iY~~~~~~~y~-~~~~~~PHiyavA 280 (1221)
.||+. .++|||+.|+|||||+|||||+.||..+.||||.|.+|||||||+.+| +|+++.|..|+ ......||+|++|
T Consensus 3 ~~~~~-~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~~~~~~l~ph~favA 81 (862)
T KOG0160|consen 3 PNPPP-MGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQAIQGELSPHLFAVA 81 (862)
T ss_pred CCCCC-CCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhcccccccCcchhhHH
Confidence 35665 799999999999999999999999999999999999999999999999 99999999999 2223369999999
Q ss_pred HHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCC--CccHHHHHHhhhHHHHHhhcCccCCCCCCCccccE
Q 000929 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG--SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKL 358 (1221)
Q Consensus 281 ~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~--~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~ 358 (1221)
+.||+.|..+..||+||||||||||||+++|++|+||+.++++ ...||++||.+|||+||||||+|++|+||||||||
T Consensus 82 ~~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~ 161 (862)
T KOG0160|consen 82 EEAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGSVEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKV 161 (862)
T ss_pred HHHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhccchhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhH
Confidence 9999999999999999999999999999999999999999998 67899999999999999999999999999999999
Q ss_pred EEEEecCCCceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCCccccCCcchHH
Q 000929 359 IEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQ 438 (1221)
Q Consensus 359 i~l~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~ 438 (1221)
++|+|+..|+|.||+|.|||||||||+.++++|||||||||+|+|.+ +++++|+|..+..|.|++|++|..+++++|+.
T Consensus 162 iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~-~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~ 240 (862)
T KOG0160|consen 162 IEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAP-EELEKLKLGTLRRFSYLNQSACVLISGVSDAE 240 (862)
T ss_pred HHHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCc-hhhhccCcCccccceecccccchhhcccccHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCCCCcceecChHHHHHHHHhcCCCHHHHHHhhhhcEeecC
Q 000929 439 NFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 518 (1221)
Q Consensus 439 ~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~ 518 (1221)
+|..++.||..+||+.++|..||++||||||||||+|...++++.....++ .+..+|.||||+.+.|...|+.|.+.++
T Consensus 241 e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~-~~~~~a~Llg~~~~~l~~~L~~r~i~~~ 319 (862)
T KOG0160|consen 241 EFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD-HLWTAAELLGCDEEALEQWLSKRKILTA 319 (862)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch-HHHHHHHHhCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999997766554444444 8999999999999999999999999999
Q ss_pred CCeeeecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCCCCcceEEEecccCcccCCCCChHHHHHhhhhHHHH
Q 000929 519 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQ 598 (1221)
Q Consensus 519 ~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ 598 (1221)
++.|.++++..||...||++||.||++||+|+|..||.+|..+......+||||||||||.|+.|||||||||||||+||
T Consensus 320 ~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkLq 399 (862)
T KOG0160|consen 320 RESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKLQ 399 (862)
T ss_pred cceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHhh
Confidence 99999999999999999999999999999999999999999876667789999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHhhhhhcCCceeeccccChHHHHHHHhcCCCCcccccccccCCCCCchHHHHHHHHHHhCCCCCccCCC
Q 000929 599 QHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER 678 (1221)
Q Consensus 599 ~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~~ 678 (1221)
|+||+|+|+.||++|..|||+|+.|+|.||++|+++|++ |.|+++||||||++|.++|.+|..||.+++..|++|.+++
T Consensus 400 q~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kpr 478 (862)
T KOG0160|consen 400 QQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKPR 478 (862)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCCC
Confidence 999999999999999999999999999999999999999 8999999999999999999999999999999999999886
Q ss_pred C--CceEEeecCcceeeeccccchhccCcchHHHHHHHhhchHHHHHHhhcccCCCCCCCCCCCCCCCCCcCccchHHHH
Q 000929 679 G--RAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKF 756 (1221)
Q Consensus 679 ~--~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~F 756 (1221)
. ..|+|.||||+|+|++.|||+||+|++++++++++..|++.+...+......++. ..+++.||+++|
T Consensus 479 ~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~----------~~~~~~tv~s~f 548 (862)
T KOG0160|consen 479 LSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSS----------AKSKRSTVGSQF 548 (862)
T ss_pred CCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchh----------hhhhcccHHHHH
Confidence 4 5899999999999999999999999999999999999999987665543221111 255778999999
Q ss_pred HHHHHHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhhcccccccc
Q 000929 757 KGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL 836 (1221)
Q Consensus 757 k~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~ 836 (1221)
+.+|..||.+|++|+||||||||||..+.|..||..+|++|||||||||++||++.|||.|.+|.||+.||++|+| ...
T Consensus 549 k~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~ 627 (862)
T KOG0160|consen 549 KLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS 627 (862)
T ss_pred HHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 555
Q ss_pred CCChHHHHHHHHHhhcCCCcceeecceeeeeccchhhHhhhhhhhhHHH-HHHHHHHHhHHHHhHhhhhhhhchhhhhhh
Q 000929 837 SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQA-IIRLQKCFRGYQARSRFRELCNGVITLQSF 915 (1221)
Q Consensus 837 ~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~~~l~A-ai~IQa~~Rg~laRk~y~~lr~aai~IQs~ 915 (1221)
..|++..|..+|+.++++ .||+|+||||++.|+++.|+.+|..++.+ ++.||+.+|+|+.|++|..+|++++.||+.
T Consensus 628 ~~~~~~~~~~il~~~~~~--~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~ 705 (862)
T KOG0160|consen 628 ASDDLSLCKVILEKLGLE--LYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAY 705 (862)
T ss_pred cccchHHHHHHHHHhchh--ceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 677799999999998887 99999999999999999999999998875 567999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhhhhccchhhH---------HhhHHHHHHHHHHHHHHHHHH
Q 000929 916 ARGENTRRRHASLGKSCSAVVPEIR---------DEQLREIICLQSAIRGWLVRK 961 (1221)
Q Consensus 916 ~Rg~~aRr~y~~lr~~AAi~IQ~~~---------~~~~~aai~IQs~~Rg~laRR 961 (1221)
+||+++|+ ..++..||+.||+.| +..+.+++.||+.+|++++|+
T Consensus 706 ~rG~~~r~--~~~~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 706 SRGVLARR--ETEREAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred hhHHHHHH--hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 333444899999988 345678899999999999987
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=1.4e-168 Score=1575.13 Aligned_cols=658 Identities=50% Similarity=0.834 Sum_probs=579.3
Q ss_pred cCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCC--CCCchhhHHHHHHHhhh
Q 000929 211 VDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIADTAYNEMM 288 (1221)
Q Consensus 211 ~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~--~~PHiyavA~~Ay~~m~ 288 (1221)
||||+.|++|||++|||+|+.||.++.||||+|++|||||||+++|+|+++++..|+++.. .|||||++|++||+.|+
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~ 80 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQML 80 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhccccccc
Confidence 7999999999999999999999999999999999999999999999999999999998754 48999999999999999
Q ss_pred hCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCCCc-----cHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEEEe
Q 000929 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSE-----GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHF 363 (1221)
Q Consensus 289 ~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~~-----~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f 363 (1221)
++++||||||||||||||||++|++|+||+.++.+.. .++++|+++||||||||||||++|+||||||||++|+|
T Consensus 81 ~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f 160 (689)
T PF00063_consen 81 RTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQF 160 (689)
T ss_dssp HHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEE
T ss_pred ccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEe
Confidence 9999999999999999999999999999999987653 79999999999999999999999999999999999999
Q ss_pred cCCCceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCCccccCCcchHHHHHHH
Q 000929 364 SAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNL 443 (1221)
Q Consensus 364 ~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l 443 (1221)
+.+|.|+||+|++||||||||+.+++||||||||||||+|+++++|++|+|.++.+|+||++++|..+++.||+.+|..+
T Consensus 161 ~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~l 240 (689)
T PF00063_consen 161 DDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQEL 240 (689)
T ss_dssp ETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHHH
T ss_pred cccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCCCCcceecChHHHHHHHHhcCCCHHHHHHhhhhcEeecCCCeee
Q 000929 444 MEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIA 523 (1221)
Q Consensus 444 ~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~i~ 523 (1221)
+.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||++++.+++|.++
T Consensus 241 ~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~ 320 (689)
T PF00063_consen 241 KDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSEELQKAAELLGVDSEELEKALTTRTIKVGGETVT 320 (689)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEEE
T ss_pred hhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHHHHHHhhhhcCCCHHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999988766778889999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCCCCcceEEEecccCcccCCCCChHHHHHhhhhHHHHHHHHH
Q 000929 524 KKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNR 603 (1221)
Q Consensus 524 ~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~ 603 (1221)
++++++||.++||+|||+||++||+|||.+||.+|++.......+||||||||||+|..|||||||||||||+||++|++
T Consensus 321 ~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~ 400 (689)
T PF00063_consen 321 KPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQ 400 (689)
T ss_dssp EE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccceeee
Confidence 99999999999999999999999999999999999986645678999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhcCCceeeccc-cChHHHHHHHhcCCCCcccccccccCCCCCchHHHHHHHHHHh-CCCCCccCC----
Q 000929 604 HLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHL-GSNSCFKGE---- 677 (1221)
Q Consensus 604 ~iF~~eq~eY~~EgI~~~~i~f-~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~-~~~~~f~~~---- 677 (1221)
++|+.||++|.+|||+|..++| .||++|||||+++|.|||++|||||.+|++||.+|+++|.+.+ +++++|.++
T Consensus 401 ~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~~~~~ 480 (689)
T PF00063_consen 401 HIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKPRFSR 480 (689)
T ss_dssp HHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECTSSST
T ss_pred ecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccccccc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999 888888654
Q ss_pred --CCCceEEeecCcceeeeccccchhccCcchHHHHHHHhhchHHHH-HHhhcccCCC----------CCCCCCCCCCCC
Q 000929 678 --RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKP----------SPKPAASSQPGA 744 (1221)
Q Consensus 678 --~~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~----------~~~~~~~~~~g~ 744 (1221)
....|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|+...... ......+....+
T Consensus 481 ~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (689)
T PF00063_consen 481 STSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQSRSSG 560 (689)
T ss_dssp SSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTSSCCC
T ss_pred ccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccccccc
Confidence 368999999999999999999999999999999999999998864 6886553200 000000011122
Q ss_pred CCcCccchHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhH
Q 000929 745 LDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFA 824 (1221)
Q Consensus 745 ~~~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~ 824 (1221)
...+..||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||+|+||+|+++|++.|||+|++|.+|+
T Consensus 561 ~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~~eF~ 640 (689)
T PF00063_consen 561 SKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTFDEFL 640 (689)
T ss_dssp GGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEHHHHH
T ss_pred cccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecchhhhh
Confidence 23455899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhcccccccc-----CCChHHHHHHHHHhhcCCCcceeecceeeeec
Q 000929 825 GRYGVLLSEKQL-----SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLR 868 (1221)
Q Consensus 825 ~RY~~L~~~~~~-----~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR 868 (1221)
+||++|++.... ..++++.|+.||+.++++...|++|+||||||
T Consensus 641 ~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 641 RRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 999999998764 36889999999999999999999999999996
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=1.3e-111 Score=1052.60 Aligned_cols=746 Identities=36% Similarity=0.530 Sum_probs=627.5
Q ss_pred CCCCccCCcCCccccccCCchhHHHHHHHHhhcCccccccCCceEeeCCCCCCC-CCChHHHHHHhccCCC--CCchhhH
Q 000929 203 ANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAI 279 (1221)
Q Consensus 203 ~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~-iY~~~~~~~y~~~~~~--~PHiyav 279 (1221)
..+....+++||++|.+++|+.+++||..||..+.||||+|.+|++||||+.+| +|.++++..|.++... +||||++
T Consensus 55 ~~~~~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ 134 (1062)
T KOG4229|consen 55 LHRPQVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAI 134 (1062)
T ss_pred ccccccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhh
Confidence 345567899999999999999999999999999999999999999999999999 9999999999965544 7999999
Q ss_pred HHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHcc-CCCccHHHHHHhhhHHHHHhhcCccCCCCCCCccccE
Q 000929 280 ADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG-GGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKL 358 (1221)
Q Consensus 280 A~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~-~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~ 358 (1221)
|+.||+.|++...||||+|||||||||||+|+++++||+.++ +....++..|+.+||+|||||||+|.+||||||||||
T Consensus 135 ad~~y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~ 214 (1062)
T KOG4229|consen 135 ADLAYQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKY 214 (1062)
T ss_pred hhhHHHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCCCCchhhhhhcchHHHHHhcccCCcccCchhhhhhe
Confidence 999999999999999999999999999999999999999999 7677899999999999999999999999999999999
Q ss_pred EEEEecCCCceeeeeeeeeeccCceeeecCCCCCcchHHHHHhcCCChhhHhhcCCCCCCCCCcccCCCcccc-CCcchH
Q 000929 359 IEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTI-DGVDDA 437 (1221)
Q Consensus 359 i~l~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~-~~~dD~ 437 (1221)
|+++|..+|.|-||+|..|||||+||+.|+.+||||||||++++|++..++..+.|..+.+|.||+++.+..+ ++.++.
T Consensus 215 i~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~ 294 (1062)
T KOG4229|consen 215 IKVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDV 294 (1062)
T ss_pred EEeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCceeeecCC--CCcceecChHHHHHHHHhcCCCHHHHHHhhhhcEe
Q 000929 438 QNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN--ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKI 515 (1221)
Q Consensus 438 ~~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~--~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i 515 (1221)
.+|..+..||..+||...++.+||++++||||+|||+|..... .+...+.+...++.+|.||+++.+.|.++++.++.
T Consensus 295 ~~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~~~ 374 (1062)
T KOG4229|consen 295 AQFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEEAVERVACLLLIKEKLLQEALTARVN 374 (1062)
T ss_pred HhHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccchHHHHHHHHhhcCHHHhhhhhcccce
Confidence 9999999999999999999999999999999999999976433 34467789999999999999999999999999999
Q ss_pred ecCCCeeeecCCHHHHHHHHHHHHHHHHHhHHHHHHHhhccccccCCCC-CcceEEEecccCcccCCCCChHHHHHhhhh
Q 000929 516 QAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQC-TGRSINILDIYGFESFKKNSFEQFCINYAN 594 (1221)
Q Consensus 516 ~~~~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~-~~~~IgILDI~GFE~f~~NsfEQLcINyaN 594 (1221)
...+|.+..+++.++|.+.||++||.||++||.|||.+||..+...... ...+||||||||||+|..|+||||||||||
T Consensus 375 ~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~An 454 (1062)
T KOG4229|consen 375 VTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLAN 454 (1062)
T ss_pred eeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999864321 358999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHhhhhhcCCceeeccccChHHHHHHHhcCCCCcccccccccCCCCCchHHHHHHHHHHhCCCCCc
Q 000929 595 ERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCF 674 (1221)
Q Consensus 595 ErLQ~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f 674 (1221)
|+||.+||+|||..||+||..|+|+|..|.|.||..|+|+|..+|+|||.+||||+.+|++||.+++.|++.+++.+..|
T Consensus 455 e~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~y 534 (1062)
T KOG4229|consen 455 EQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNLY 534 (1062)
T ss_pred HHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876554
Q ss_pred cCC---CCCceEEeecCcceeeeccccchhccCcchHHHHHHHhhchHHHHHHh-hcccCCCCC--------------CC
Q 000929 675 KGE---RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLF-ASKMLKPSP--------------KP 736 (1221)
Q Consensus 675 ~~~---~~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~~lf-~~~~~~~~~--------------~~ 736 (1221)
..+ ....|+|.||||.|.|++.||++||+|.++.|++.++.+|++.+...+ .......+. .+
T Consensus 535 ~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~~ 614 (1062)
T KOG4229|consen 535 VFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPLE 614 (1062)
T ss_pred ccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccccch
Confidence 432 357999999999999999999999999999999999999887765433 221111000 00
Q ss_pred CC---C-CCCCCCCc----------CccchHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCccchh-hhhhhhhcc
Q 000929 737 AA---S-SQPGALDT----------QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEED-LVLQQFRCC 801 (1221)
Q Consensus 737 ~~---~-~~~g~~~~----------~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~-~V~~QLr~~ 801 (1221)
+. + .+.+..+. ...+++.+++-++......|....+||.|||++|+.-.+..++.. .+..++...
T Consensus 615 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~ 694 (1062)
T KOG4229|consen 615 VTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSR 694 (1062)
T ss_pred hhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhc
Confidence 00 0 01111111 124566677778889999999999999999999999888888866 889999999
Q ss_pred chhHHHHHhhcCCceecchhhhHHhhhccccccccCCChH-HHHHHHHHhhcCCCcceeecceeeeeccchhhHhhhhhh
Q 000929 802 GVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPL-SISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 880 (1221)
Q Consensus 802 gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~~-~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~ 880 (1221)
|..++....+.|+..+..|++++++++..........+.. ..|..++..- .-+++..+.+.++.+...-..+.-.+.
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~ 772 (1062)
T KOG4229|consen 695 GSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKN--AINMKSERLTTLLPRYIPDPCLDPVRR 772 (1062)
T ss_pred ccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhc--cccchhhhhcccccccCccccCCcccc
Confidence 9999999999999999999999988876654432222222 2344444443 336788888888876543333332233
Q ss_pred hhHHHHHHHHHHHhHHHHhHhhhhhhh----chhhhhhhhhhHHHHHHHHHhhhhhhccchhhHHhhHHHHHHHHHHHHH
Q 000929 881 QVLQAIIRLQKCFRGYQARSRFRELCN----GVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRG 956 (1221)
Q Consensus 881 ~~l~Aai~IQa~~Rg~laRk~y~~lr~----aai~IQs~~Rg~~aRr~y~~lr~~AAi~IQ~~~~~~~~aai~IQs~~Rg 956 (1221)
......+..|..++.|..+.++...+. ..+.+|.-+++...+..+...-. +.-..++.+|..|=|
T Consensus 773 e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~-----------~~~~~~v~~~~~~t~ 841 (1062)
T KOG4229|consen 773 ERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGL-----------RFPDNVVLRQVSYTG 841 (1062)
T ss_pred chhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhcc-----------CCChHHHHHhhhchh
Confidence 333344456666666666665444322 45666666665555544332211 122456666666666
Q ss_pred HHHHH
Q 000929 957 WLVRK 961 (1221)
Q Consensus 957 ~laRR 961 (1221)
.+.+.
T Consensus 842 ~~~~~ 846 (1062)
T KOG4229|consen 842 ELDQE 846 (1062)
T ss_pred hhccc
Confidence 44333
No 23
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.69 E-value=2.1e-08 Score=107.30 Aligned_cols=89 Identities=25% Similarity=0.268 Sum_probs=67.5
Q ss_pred hhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCCCccHHHHHHhhhHHHHHhh-cCccCCCCCCCc
Q 000929 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFG-NAKTSRNDNSSR 354 (1221)
Q Consensus 276 iyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~snpiLEAFG-NAkT~rN~NSSR 354 (1221)
||..+..++..|+ ++.|+||+..|+||||||+|+.--. ...|--...-+.+++.....+++. +|.|.+|++|||
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~----~~~Giip~~~~~~~~ll~~g~~~R~~~~t~~N~~SSR 82 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR----EGAGIIPRTVTDVIDLMDKGNANRTTAATAMNEHSSR 82 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC----CCCCcchHHHHHHHHHHhhccccccccccCCCCccCc
Confidence 8888889999998 5799999999999999998864211 000000112223677888888999 999999999999
Q ss_pred cccEEEEEecCCCce
Q 000929 355 FGKLIEIHFSAFGKI 369 (1221)
Q Consensus 355 FGK~i~l~f~~~g~i 369 (1221)
+..+++|++......
T Consensus 83 sH~i~~i~v~~~~~~ 97 (186)
T cd01363 83 SHSVFRIHFGGKNAL 97 (186)
T ss_pred ccEEEEEEEEEeecC
Confidence 999999999754443
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.37 E-value=1.7e-05 Score=107.23 Aligned_cols=372 Identities=13% Similarity=0.073 Sum_probs=175.2
Q ss_pred eeeccCceeeecCCCCCcchHHHHHhcCCChhhH----hhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHHHHhhcC
Q 000929 376 TFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLK----ERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVL 451 (1221)
Q Consensus 376 tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r----~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG 451 (1221)
.+....+..+.+.++..+||-|+.+.-+.++..- +.|.| ..++.+.|. ++..+..-|-.+..+.
T Consensus 219 vLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLL---EKsRv~~Q~-----~~Er~yhiFyqlls~~---- 286 (1930)
T KOG0161|consen 219 VLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLL---EKSRVIRQA-----PGERNYHIFYQLLSGA---- 286 (1930)
T ss_pred hHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHH---HHhHhhccC-----cchhHHHHHHHHHhCC----
Confidence 3444568888899999999999999887654321 22222 122333333 2222233333333222
Q ss_pred CChhhHHHHH--HHHHHHHHhcCceeeecCCCCcceecCh---HHHHHHHHhcCCCHHHHHHhhhh--cEeecCCCeeee
Q 000929 452 IRKEDREQTF--AMLAAVLWLGNISFQVIDNENHVEVIAD---EAVTTAAMLMGCSSDELMLALST--HKIQAGKDSIAK 524 (1221)
Q Consensus 452 ~~~~e~~~i~--~iLaAILhLGNi~F~~~~~~~~~~~~~~---~~l~~aA~LLGv~~~~L~~~L~~--r~i~~~~e~i~~ 524 (1221)
++.....++ .-+.--.+++|..+ ..+ -+.+. ..+..|-..||+++++...++.- -.+..|+=.+..
T Consensus 287 -~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~-----g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~ 359 (1930)
T KOG0161|consen 287 -DPELKEELLLSDNVKDYKFLSNGES-TIP-----GVDDAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQ 359 (1930)
T ss_pred -CHHHHHHHhhcccchhhhhhccccC-CCC-----CcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhc
Confidence 222211110 00001111222211 111 11122 23566778999999998877532 223344433332
Q ss_pred cCCHHHHHHHHHHHHHHH-----HHhHHHHHHHhhccccccCCCCCcceEEEecccCcccCCCCChHHHHHhhhhHHHHH
Q 000929 525 KLTLQQAIDSRDALAKFI-----YGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQ 599 (1221)
Q Consensus 525 ~l~~~qA~~~RDaLak~L-----Y~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~ 599 (1221)
.-..+||.-.....|-.+ |...+-| +..+.+ .....+-.++.|+.. +| .++|=+-|..
T Consensus 360 ~~~~~qa~~~~~~~a~ka~~llg~~~~~~~-----~al~~p----riKvg~e~v~k~q~~------~q--~~~~v~alAk 422 (1930)
T KOG0161|consen 360 EPREEQAEFDNTEVADKACHLLGINVEEFL-----KALLRP----RIKVGREWVSKAQNV------EQ--VLFAVEALAK 422 (1930)
T ss_pred cccccccCCCCchHHHHHHHHcCCCHHHHH-----HHhccc----ceeccchhhhhcchH------HH--HHHHHHHHHH
Confidence 223444433222222221 2222222 222221 112333455555533 33 6777788887
Q ss_pred HHHHhhhhhhHhhhhhcCCceeeccccChHHHHHHHhcCCCCcccccccccCCCCCchH----HH-HHHHHHHhCCCCCc
Q 000929 600 HFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDL----TF-ANKLKQHLGSNSCF 674 (1221)
Q Consensus 600 ~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~----~f-~~kL~~~~~~~~~f 674 (1221)
.-+..+|. ..-.+...+++|. .+-..+|.+++-...=||.. .|=+ .| .+||.+.++.|..+
T Consensus 423 ~lYerlF~-wlV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~---------nSFEQLciNytnEkLQqfFnh~mFv 488 (1930)
T KOG0161|consen 423 ALYERLFG-WLVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF---------NSFEQLCINYTNEKLQQFFNHHMFV 488 (1930)
T ss_pred HHHHHHHH-HHHHHHHHHhhhc----cccCCcceeeeeccccccCc---------CCHHHHHHHHHHHHHHhhhcchhhh
Confidence 77777775 4566777888886 34444555554322112221 1111 11 25677666655443
Q ss_pred cCC-----CCCceEEeecCcceeeeccccchhccCcc---hHHHHHHHh-------hchHHH-HHHhhcccCCCCCCCCC
Q 000929 675 KGE-----RGRAFSIRHYAGEVPYDTNGFLEKNRDPL---QTDIIQLLS-------SCTCQV-LQLFASKMLKPSPKPAA 738 (1221)
Q Consensus 675 ~~~-----~~~~F~I~HyaG~V~Y~~~gfleKNrD~l---~~d~~~ll~-------~S~~~l-~~lf~~~~~~~~~~~~~ 738 (1221)
.-. -+-+|..-|| |+-.++...| +..++.+|. +|+..| -.|+...... + |
T Consensus 489 lEqeeY~~EgIew~fidf---------G~Dlq~~idLIEkp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk-~--~-- 554 (1930)
T KOG0161|consen 489 LEQEEYQREGIEWDFIDF---------GLDLQPTIDLIEKPMGILSLLDEECVVPKATDKTFLEKLCDQHLGK-H--P-- 554 (1930)
T ss_pred hhHHHHHHhCCceeeecc---------ccchhhhHHHHhchhhHHHHHHHHHhcCCCccchHHHHHHHHhhcc-C--c--
Confidence 211 1456777777 4433333222 113333332 111111 2232221100 0 0
Q ss_pred CCCCCCCCcCccchHHHHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceec
Q 000929 739 SSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRM 818 (1221)
Q Consensus 739 ~~~~g~~~~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~ 818 (1221)
..+++. ..+....+....-+.+ |+|.-+|-..++..-....|+.+|+|++ .+.|...-.| +.
T Consensus 555 -------~f~~~k-----~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~---~~ 616 (1930)
T KOG0161|consen 555 -------KFQKPK-----GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD---YA 616 (1930)
T ss_pred -------cccCcc-----cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh---hh
Confidence 001111 1122222333333333 9999999888887778889999999999 8887766555 55
Q ss_pred chhhhHHhhhc
Q 000929 819 RHQEFAGRYGV 829 (1221)
Q Consensus 819 ~~~eF~~RY~~ 829 (1221)
.+..+..++..
T Consensus 617 ~~~~~~~~~~~ 627 (1930)
T KOG0161|consen 617 GAAAAAKGGEA 627 (1930)
T ss_pred ccchhhhhhhh
Confidence 55555555543
No 25
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=98.11 E-value=8.7e-06 Score=66.03 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=39.0
Q ss_pred CcEEEEEcCCCCEEEEEEEEeeCCeEEEEecCCeEEEEeCCC
Q 000929 158 KLRVWCRLEDGKWESGMIQSTSGDEAFVLLSNGNVVKVSTGE 199 (1221)
Q Consensus 158 ~~~vW~~~~~~~~~~~~i~~~~~~~~~v~~~~g~~~~v~~~~ 199 (1221)
|..||||+++++|+.|.|++..|+.++|.+.+|+.++|+.++
T Consensus 1 K~~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~dd 42 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKDD 42 (42)
T ss_dssp TTEEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGGG
T ss_pred CCEEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCCC
Confidence 468999999999999999999999999999999999998764
No 26
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.90 E-value=0.00019 Score=90.89 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=57.7
Q ss_pred HHHHhHhhhhhhhchhhhhhhhhhHHHHHHHHHhhhhhhccchhhH-----Hh---hHHHHHHHHHHHHHHHHHHHHHHH
Q 000929 895 GYQARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIR-----DE---QLREIICLQSAIRGWLVRKQLKMH 966 (1221)
Q Consensus 895 g~laRk~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~AAi~IQ~~~-----~~---~~~aai~IQs~~Rg~laRR~~~l~ 966 (1221)
+.+..++-..+..+++.||+.+|+|..|+.|..+|. +++.||..+ ++ ...|+|.||+.+|+++.||.|+..
T Consensus 662 ~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~-~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~ 740 (862)
T KOG0160|consen 662 AVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRS-AVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRAL 740 (862)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334444445566788999999999999999988876 689999988 44 667899999999999999999833
No 27
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=97.39 E-value=3.8e-05 Score=99.32 Aligned_cols=202 Identities=19% Similarity=0.156 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHcccCCeeEEecCCCCCCCCCccchhhhhhhhhccchhHHHHHhhcCCceecchhhhHHhhhcccccc
Q 000929 755 KFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEK 834 (1221)
Q Consensus 755 ~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~ 834 (1221)
++.....+++..+....|.|++||+-|..+....|+...|..|+++.|+++..++.+.+|+..+++..|...+.++.+..
T Consensus 794 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~ 873 (1062)
T KOG4229|consen 794 SPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPET 873 (1062)
T ss_pred ccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCcc
Confidence 55566778999999999999999999988888999999999999999999999999999999999999999999988732
Q ss_pred ccCCChHHHHHHHHHhhcCCCcceeecceeeeeccchhhHhhhhhhh-hHH-HHHHHHHHHhHHHHhHhhhhhhhchhhh
Q 000929 835 QLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQ-VLQ-AIIRLQKCFRGYQARSRFRELCNGVITL 912 (1221)
Q Consensus 835 ~~~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~~-~l~-Aai~IQa~~Rg~laRk~y~~lr~aai~I 912 (1221)
.. .........+....+.++.|.+++|+...-...++..-.. ... -+...|++++-...|+.+..+..+.+.+
T Consensus 874 ~~-----~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~ 948 (1062)
T KOG4229|consen 874 VD-----TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLI 948 (1062)
T ss_pred ch-----hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHH
Confidence 11 1111222233446678999999999887765555543322 222 2567899999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHhhh-h-hhccchhhH---------HhhHHHHHHHHHHHHHHHHHHHH
Q 000929 913 QSFARGENTRRRHASLGK-S-CSAVVPEIR---------DEQLREIICLQSAIRGWLVRKQL 963 (1221)
Q Consensus 913 Qs~~Rg~~aRr~y~~lr~-~-AAi~IQ~~~---------~~~~~aai~IQs~~Rg~laRR~~ 963 (1221)
| |+++..|+.-...-. . +++-+|..| ...+++++.+|+.+++...+..+
T Consensus 949 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 949 Q--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred H--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhH
Confidence 9 788877764332111 1 444444444 22344555555555555444433
No 28
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.88 E-value=0.0013 Score=83.76 Aligned_cols=45 Identities=31% Similarity=0.524 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhHHHHhHhhhhhhhchhhhhhhhhhHHHHHHHHHh
Q 000929 884 QAIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASL 928 (1221)
Q Consensus 884 ~Aai~IQa~~Rg~laRk~y~~lr~aai~IQs~~Rg~~aRr~y~~l 928 (1221)
.++..||..+|||+.|+.|..++..++.||+.+||+..|+.|..+
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki 855 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKI 855 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhhee
Confidence 477899999999999999999999999999999999999998753
No 29
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.80 E-value=0.0016 Score=44.91 Aligned_cols=20 Identities=45% Similarity=0.677 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000929 945 REIICLQSAIRGWLVRKQLK 964 (1221)
Q Consensus 945 ~aai~IQs~~Rg~laRR~~~ 964 (1221)
+|+|+||+.||||++|++|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 57788888888888888764
No 30
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.56 E-value=0.0022 Score=44.18 Aligned_cols=20 Identities=45% Similarity=0.843 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhHHHHhHhhh
Q 000929 884 QAIIRLQKCFRGYQARSRFR 903 (1221)
Q Consensus 884 ~Aai~IQa~~Rg~laRk~y~ 903 (1221)
+|++.||++||||++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 36777777777777777764
No 31
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.33 E-value=0.045 Score=71.94 Aligned_cols=76 Identities=24% Similarity=0.317 Sum_probs=61.9
Q ss_pred HHHHHHHHHhHHHH----hHhhhhhhhchhhhhhhhhhHHHHHHHHHhhhhhhccchhhHHhhHHHHHHHHHHHHHHHHH
Q 000929 885 AIIRLQKCFRGYQA----RSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVR 960 (1221)
Q Consensus 885 Aai~IQa~~Rg~la----Rk~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~AAi~IQ~~~~~~~~aai~IQs~~Rg~laR 960 (1221)
.+..||+.|||++. ...+.....-++.+|++.||+++|+.|....+ .++....++++||+.+|.+.+|
T Consensus 567 ~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q--------~~~~~~~~~i~iqs~~r~f~~r 638 (1401)
T KOG2128|consen 567 FVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQ--------YFKDNMTKIIKIQSKIRKFPNR 638 (1401)
T ss_pred hHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHH--------HHHHhhhhHHHHHHHHHhcccc
Confidence 67899999999983 33445567789999999999999999987665 3455667899999999999999
Q ss_pred HHHHHHHh
Q 000929 961 KQLKMHKL 968 (1221)
Q Consensus 961 R~~~l~~~ 968 (1221)
..|+.+.-
T Consensus 639 ~~y~~L~~ 646 (1401)
T KOG2128|consen 639 KDYKLLFT 646 (1401)
T ss_pred hHHHHHhc
Confidence 99994443
No 32
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.83 E-value=0.0066 Score=71.72 Aligned_cols=66 Identities=26% Similarity=0.416 Sum_probs=47.7
Q ss_pred eeCCCCCCCCCChHHHHHHhccCCCCCchhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHH-HHHHHHHHH
Q 000929 248 AVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETA-KFAMQYLAA 319 (1221)
Q Consensus 248 aVNP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~-K~il~yLa~ 319 (1221)
++|||...| |++.+-..++.+...|-|-| -+..|-.-..||+||++||.|||||+-. ..++.|-..
T Consensus 23 ~~Npf~~~p-~s~rY~~ilk~R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~ 89 (699)
T KOG0925|consen 23 AINPFNGKP-YSQRYYDILKKRRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELS 89 (699)
T ss_pred hcCCCCCCc-CcHHHHHHHHHHhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHh
Confidence 499999988 78888777776665564433 3455666678999999999999999753 344444433
No 33
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=95.40 E-value=0.41 Score=63.88 Aligned_cols=89 Identities=24% Similarity=0.252 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHhHHHHhHhhhhhhhchhhhh-hhhhhHHHHHHHHHhhhh-hhccchhhH---------HhhHHHHHHH
Q 000929 882 VLQAIIRLQKCFRGYQARSRFRELCNGVITLQ-SFARGENTRRRHASLGKS-CSAVVPEIR---------DEQLREIICL 950 (1221)
Q Consensus 882 ~l~Aai~IQa~~Rg~laRk~y~~lr~aai~IQ-s~~Rg~~aRr~y~~lr~~-AAi~IQ~~~---------~~~~~aai~I 950 (1221)
.+++++.+|..||....|+.|+.....++.+| ..+|....+..+...... +++.+|+.| ....+..|.+
T Consensus 792 ~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~ 871 (1463)
T COG5022 792 KWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYL 871 (1463)
T ss_pred HHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHH
Confidence 34577888888988888888888888888888 666666666644433332 777788877 2345677889
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 000929 951 QSAIRGWLVRKQLKMHKLKQ 970 (1221)
Q Consensus 951 Qs~~Rg~laRR~~~l~~~~a 970 (1221)
|+.+|.-.|+|++...+...
T Consensus 872 ~~~~r~~~a~r~~~e~k~~~ 891 (1463)
T COG5022 872 QSAQRVELAERQLQELKIDV 891 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 99999999999998444333
No 34
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.70 E-value=0.029 Score=40.71 Aligned_cols=19 Identities=47% Similarity=0.849 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhHHHHhHhh
Q 000929 884 QAIIRLQKCFRGYQARSRF 902 (1221)
Q Consensus 884 ~Aai~IQa~~Rg~laRk~y 902 (1221)
++++.||+.||||++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3556666666666666666
No 35
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.63 E-value=0.035 Score=40.28 Aligned_cols=21 Identities=48% Similarity=0.711 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000929 944 LREIICLQSAIRGWLVRKQLK 964 (1221)
Q Consensus 944 ~~aai~IQs~~Rg~laRR~~~ 964 (1221)
.+++++||+.|||+++|+.|+
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 467888899999998888873
No 36
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.58 E-value=0.026 Score=55.52 Aligned_cols=23 Identities=48% Similarity=0.595 Sum_probs=21.1
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
.|+|+|.||||||+.++.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998875
No 37
>PTZ00014 myosin-A; Provisional
Probab=94.58 E-value=0.046 Score=70.93 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=36.7
Q ss_pred hhchhhhhhhhhhHHHHHHHHHhhhhhhccchhhHHhhHHHHHHHHHHHHHHHHHHH
Q 000929 906 CNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQ 962 (1221)
Q Consensus 906 r~aai~IQs~~Rg~~aRr~y~~lr~~AAi~IQ~~~~~~~~aai~IQs~~Rg~laRR~ 962 (1221)
...++.||++|||+++|+.|..++ .++++||+.||+|++++.
T Consensus 777 ~~~~~~iq~~~r~~~~r~~~~~~~---------------~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 777 EPLVSVLEALILKIKKKRKVRKNI---------------KSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhc
Confidence 456889999999999999998764 478999999999999875
No 38
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=94.34 E-value=3.2 Score=52.02 Aligned_cols=29 Identities=31% Similarity=0.595 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhHHHHhHhhhhhhhchhhh
Q 000929 884 QAIIRLQKCFRGYQARSRFRELCNGVITL 912 (1221)
Q Consensus 884 ~Aai~IQa~~Rg~laRk~y~~lr~aai~I 912 (1221)
.+++++|+..|||++|++++.....+..+
T Consensus 814 e~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~ 842 (1259)
T KOG0163|consen 814 ECVLKAQRIARGYLARKRHRPRIAGIRKI 842 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHH
Confidence 35788999999999999988765544433
No 39
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=93.50 E-value=0.36 Score=63.97 Aligned_cols=66 Identities=30% Similarity=0.434 Sum_probs=49.2
Q ss_pred HHHHHHhHHHHhHhhhhhhh-------chhhhhhhhhhHHHHHHHHHhhhhhhccchhhHHhhHHHHHHHHHHHHHHHHH
Q 000929 888 RLQKCFRGYQARSRFRELCN-------GVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVR 960 (1221)
Q Consensus 888 ~IQa~~Rg~laRk~y~~lr~-------aai~IQs~~Rg~~aRr~y~~lr~~AAi~IQ~~~~~~~~aai~IQs~~Rg~laR 960 (1221)
++|+..||+..|..+..... .+.-||+.|||++. |..... +|....+-++.+|+..||.++|
T Consensus 540 ~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~--------~~~~~~~evv~~qs~~R~~lsr 608 (1401)
T KOG2128|consen 540 RIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDV--------YLDSAKKEVVKFQSLTRGALSR 608 (1401)
T ss_pred hhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHH--------HHHHhhHHHHHHHHHHHHHHHH
Confidence 45899999888887664422 57789999999986 322211 2345567899999999999999
Q ss_pred HHHH
Q 000929 961 KQLK 964 (1221)
Q Consensus 961 R~~~ 964 (1221)
+.+.
T Consensus 609 k~~~ 612 (1401)
T KOG2128|consen 609 KKYS 612 (1401)
T ss_pred hhHH
Confidence 9887
No 40
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.34 E-value=0.057 Score=53.13 Aligned_cols=22 Identities=50% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|+|.+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999987
No 41
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.31 E-value=0.067 Score=56.21 Aligned_cols=33 Identities=30% Similarity=0.533 Sum_probs=22.7
Q ss_pred hhhCCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 287 MMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 287 m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+...+....|+|.|++|+|||...+.+++++..
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356677899999999999999999999888875
No 42
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.20 E-value=0.065 Score=53.18 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+...+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35678999999999999999999887764
No 43
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.04 E-value=0.12 Score=50.93 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=25.7
Q ss_pred hCCCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 289 GDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 289 ~~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.......|+|.|++|+|||..++.+.+.+.
T Consensus 15 ~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 15 ELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred hCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 344567999999999999999999988875
No 44
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.91 E-value=0.078 Score=56.11 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
+.|+|+|.||||||+.++.+...|.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999998876653
No 45
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.77 E-value=0.11 Score=58.57 Aligned_cols=28 Identities=36% Similarity=0.469 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.....++|+|++|+|||+.++.++..+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999998876654
No 46
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.38 E-value=0.12 Score=46.42 Aligned_cols=22 Identities=45% Similarity=0.607 Sum_probs=20.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 47
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=91.87 E-value=0.31 Score=63.00 Aligned_cols=61 Identities=26% Similarity=0.390 Sum_probs=51.2
Q ss_pred HHHHHHHHHhHHHHhHhhhhhhhchhhhhhhhhhHHHHHHHHHhhhhhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000929 885 AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1221)
Q Consensus 885 Aai~IQa~~Rg~laRk~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~AAi~IQ~~~~~~~~aai~IQs~~Rg~laRR~~~ 964 (1221)
..+.++..++++..|.. -.++..||.++|||+.|+.|..+++. +|+||+++||+-.|+.|+
T Consensus 793 ~~m~~~~a~~~~~~r~~----~~aa~~iq~~f~~yk~r~~~l~tr~p---------------~v~iqa~~rg~q~r~dy~ 853 (975)
T KOG0520|consen 793 VSMKASSAFSMCDDRSD----PAAASRIQKKFRGYKQRKEFLSTRQP---------------IVKIQAAVRGYQVRKDYR 853 (975)
T ss_pred hhhhcccchhcCccccc----hhHHHHhhhhhhhHHhhhhhcccCCc---------------cccchhhhhchhHhhhhh
Confidence 45678888886655543 35789999999999999999988864 789999999999999998
No 48
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.83 E-value=0.12 Score=51.14 Aligned_cols=23 Identities=43% Similarity=0.723 Sum_probs=21.7
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa 318 (1221)
|+|.|++|+|||+.++.+.++|-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 79999999999999999999974
No 49
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.64 E-value=0.17 Score=55.17 Aligned_cols=27 Identities=37% Similarity=0.340 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.+.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999988876
No 50
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.57 E-value=0.14 Score=55.69 Aligned_cols=25 Identities=24% Similarity=0.615 Sum_probs=22.4
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.|+|+|.+|||||++.+.++.++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888764
No 51
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.42 E-value=0.13 Score=50.00 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.+.|+|.|.+|+|||++++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999998877653
No 52
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.39 E-value=0.21 Score=58.42 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=28.3
Q ss_pred HHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 283 Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+..++..+. .|||+|..|||||++.+.++.++..
T Consensus 136 ~L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 136 VIRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3455566554 5999999999999999999998864
No 53
>PRK06696 uridine kinase; Validated
Probab=91.38 E-value=0.27 Score=54.33 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=29.9
Q ss_pred HHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 279 IADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 279 vA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+|+..+.. ..+..--|.|+|.||||||+.++.|.+.|..
T Consensus 10 la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 10 LAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45554432 3456778999999999999999999988854
No 54
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=91.37 E-value=0.22 Score=52.25 Aligned_cols=29 Identities=38% Similarity=0.412 Sum_probs=25.5
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.-.|.|+|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999998765
No 55
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.27 E-value=0.15 Score=55.17 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
..+.|+|.|.||||||+.++.+++.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56889999999999999999998865
No 56
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=91.19 E-value=0.14 Score=55.17 Aligned_cols=26 Identities=50% Similarity=0.535 Sum_probs=23.5
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
|-|+|.||||||+.++.+...|-..+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 77999999999999999999998644
No 57
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=91.08 E-value=0.18 Score=52.39 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~y 316 (1221)
...|+|+|+||||||+.+..+++.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 689999999999999999877664
No 58
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.03 E-value=0.33 Score=49.61 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.....|+++|+.|||||+.+|.+++.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 445689999999999999999998876
No 59
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.01 E-value=0.17 Score=54.63 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=19.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999987776
No 60
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.99 E-value=0.24 Score=56.28 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=26.8
Q ss_pred HHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 284 y~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+..++... .-.|+|+|++|||||++.+.++.++..
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 44554322 346999999999999999999988753
No 61
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.98 E-value=0.19 Score=49.39 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCCChhHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAM 314 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il 314 (1221)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45889999999999999999875
No 62
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.85 E-value=0.15 Score=58.72 Aligned_cols=28 Identities=39% Similarity=0.443 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
++.+.+=|-||||||||.+++.||..|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4568889999999999999999999875
No 63
>PRK08233 hypothetical protein; Provisional
Probab=90.82 E-value=0.15 Score=53.65 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
.-|.|+|.||||||+.++.+..+|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999988877653
No 64
>PRK05541 adenylylsulfate kinase; Provisional
Probab=90.82 E-value=0.21 Score=52.80 Aligned_cols=29 Identities=34% Similarity=0.346 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.....|+|+|.||||||+.++.+...|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999888864
No 65
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.78 E-value=0.22 Score=54.32 Aligned_cols=28 Identities=36% Similarity=0.364 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.+...|.|+|.||||||+.++.+...|.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567788999999999999988876653
No 66
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=90.62 E-value=0.18 Score=53.98 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yL 317 (1221)
-.-|||||.||+|||+.+|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999999987755
No 67
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=90.59 E-value=0.18 Score=52.54 Aligned_cols=23 Identities=48% Similarity=0.616 Sum_probs=20.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998765
No 68
>PRK06762 hypothetical protein; Provisional
Probab=90.59 E-value=0.23 Score=51.86 Aligned_cols=24 Identities=50% Similarity=0.603 Sum_probs=22.4
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yL 317 (1221)
..|+|+|.+|||||+.++.+.+.|
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999887
No 69
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.55 E-value=0.68 Score=51.37 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=29.2
Q ss_pred hCCCceEEEEcCCCCCChhHHHHHHHHHHHHccC
Q 000929 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 289 ~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
..++..-|.|+|.||||||+.++.+...|...++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 3467788999999999999999999998887654
No 70
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.42 E-value=0.39 Score=52.56 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=30.6
Q ss_pred HHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 282 ~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+.+.+........|+|.|++|+|||..++.+.+++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444567889999999999999999999998764
No 71
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.40 E-value=0.21 Score=50.45 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.3
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|+|.+|||||+.++.+...|
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998865
No 72
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=90.24 E-value=0.4 Score=58.07 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=34.3
Q ss_pred chhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 275 HVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 275 HiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
.++.+.-.|...++.-.+.|.+.|.|.||+|||+..+.|+.+
T Consensus 137 ~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 137 TPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhcc
Confidence 345566678888877788999999999999999998877654
No 73
>PRK00131 aroK shikimate kinase; Reviewed
Probab=90.16 E-value=0.26 Score=51.35 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
....|+|.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998876
No 74
>PRK06547 hypothetical protein; Provisional
Probab=90.12 E-value=0.42 Score=50.86 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.....-|+|+|.||||||+.++.+.+.+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5667889999999999999999987764
No 75
>PRK07261 topology modulation protein; Provisional
Probab=90.04 E-value=0.23 Score=52.73 Aligned_cols=22 Identities=41% Similarity=0.439 Sum_probs=19.1
Q ss_pred EEEEcCCCCCChhHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~y 316 (1221)
-|+|.|.||||||+.++.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999987544
No 76
>PTZ00301 uridine kinase; Provisional
Probab=89.99 E-value=0.24 Score=54.52 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa 318 (1221)
|-|+|.||||||+.++.|.+.|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 67899999999999998887764
No 77
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.88 E-value=0.48 Score=52.91 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=31.5
Q ss_pred HHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 280 ADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 280 A~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
|-.+.+.+.......+++|.|++|+|||+.+..+.+++...
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 33455555555566799999999999999999888887753
No 78
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=89.84 E-value=0.24 Score=54.80 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.1
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
|-|+|.||||||++++.|...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999888764
No 79
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=89.81 E-value=0.25 Score=52.76 Aligned_cols=24 Identities=42% Similarity=0.444 Sum_probs=21.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999888864
No 80
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=89.80 E-value=0.28 Score=51.96 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.+-||++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999887654
No 81
>PRK08118 topology modulation protein; Reviewed
Probab=89.69 E-value=0.27 Score=51.95 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=21.8
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
+-|+|.|.+|||||+.++.|-+.|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999987753
No 82
>PF12846 AAA_10: AAA-like domain
Probab=89.66 E-value=0.29 Score=55.42 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHHHccC
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
|..++|.|.||||||++++.++.+++..+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~ 30 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGP 30 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCC
Confidence 456899999999999999999999887663
No 83
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.58 E-value=0.24 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.622 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...|+|+|++|||||++.+.++.++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46799999999999999999888764
No 84
>PF13245 AAA_19: Part of AAA domain
Probab=89.51 E-value=0.42 Score=43.94 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+...+|.|..|||||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667788999999999999888888885
No 85
>PF05729 NACHT: NACHT domain
Probab=89.46 E-value=0.31 Score=49.99 Aligned_cols=27 Identities=37% Similarity=0.427 Sum_probs=23.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
-++|+|+.|+|||+.++.++..++...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 489999999999999999999888644
No 86
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=89.40 E-value=0.31 Score=51.81 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=22.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa 318 (1221)
++++.|.||.|||++++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999988
No 87
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=88.97 E-value=0.42 Score=56.40 Aligned_cols=37 Identities=27% Similarity=0.508 Sum_probs=30.0
Q ss_pred HHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 283 Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+++.......+.+|+|+|++|+|||.+++.+++.|..
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3344444677889999999999999999999988764
No 88
>PRK00889 adenylylsulfate kinase; Provisional
Probab=88.95 E-value=0.48 Score=50.02 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
....|+|.|.+|||||+.++.+..+|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999753
No 89
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=88.92 E-value=0.24 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|.|.+|||||+.++.+-+.|
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999988776
No 90
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=88.90 E-value=0.26 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCChhHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~y 316 (1221)
+.|+|+|.||||||+..+.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 57999999999999999888443
No 91
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.88 E-value=0.29 Score=57.76 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...|+|+|++|||||++.+.++.++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 577999999999999999999888653
No 92
>PRK14737 gmk guanylate kinase; Provisional
Probab=88.62 E-value=0.31 Score=52.56 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.--|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4569999999999999999887754
No 93
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=88.60 E-value=0.3 Score=55.68 Aligned_cols=20 Identities=40% Similarity=0.617 Sum_probs=17.5
Q ss_pred eEEEEcCCCCCChhHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFA 313 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~i 313 (1221)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 56999999999999987766
No 94
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=88.60 E-value=2.4 Score=51.62 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=34.8
Q ss_pred hhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 276 iyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
+|.+.-.|...+..-.+.|.+.|.|.||+|||+..+.++...
T Consensus 140 ~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 140 VFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred eccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 444556688888777899999999999999999998887654
No 95
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=88.60 E-value=0.35 Score=47.11 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=21.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
|.|.|++|.|||..++.++++|..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999988775
No 96
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=88.59 E-value=0.37 Score=53.07 Aligned_cols=26 Identities=46% Similarity=0.590 Sum_probs=20.7
Q ss_pred ceEEE--EcCCCCCChhHHHHHHHHHHH
Q 000929 293 NQSII--ISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIi--isGESGAGKTet~K~il~yLa 318 (1221)
+++|| |+|-||||||+.++.+..-|-
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 55555 589999999999998876654
No 97
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.58 E-value=3.9 Score=48.86 Aligned_cols=75 Identities=21% Similarity=0.255 Sum_probs=60.5
Q ss_pred CcHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000929 992 VPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAA 1066 (1221)
Q Consensus 992 ~~e~e~~~l~~~l~eLq~r~~e~e~~l~~~eeEn~~L~eqL~~~e~~~~e~E~k~k~~ee~~~k~~eeLq~~La~ 1066 (1221)
..+.+.+.....+.+++.++.+.++++...+++|..|.+.+..-...+.+.+++.++.....++++.+||.++..
T Consensus 372 ~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 372 DLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455556666777777888888888888889999999888888888888888888888899999999999883
No 98
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=88.57 E-value=0.34 Score=56.13 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=27.4
Q ss_pred HHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 284 y~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+..+++. ...|+|+|..|||||++++.++.++..
T Consensus 125 L~~~v~~--~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 125 LREAVLA--RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHc--CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3344443 357999999999999999999999875
No 99
>PRK14738 gmk guanylate kinase; Provisional
Probab=88.47 E-value=0.36 Score=52.76 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
....-|||+|.||||||+.++.+++.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45688999999999999988777654
No 100
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.44 E-value=0.29 Score=50.00 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999888865
No 101
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.42 E-value=0.37 Score=56.86 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...|+|+|.+|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45699999999999999999988764
No 102
>PRK03846 adenylylsulfate kinase; Provisional
Probab=88.34 E-value=0.64 Score=50.34 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=28.0
Q ss_pred hCCCceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 289 ~~~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
...+...|+|+|.||||||+.++.+...|...+
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~ 52 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELG 52 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 345678999999999999999999999886543
No 103
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=88.33 E-value=0.33 Score=52.48 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|.|+|-||||||+.++.+.+.|
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999998887653
No 104
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=88.18 E-value=0.4 Score=49.66 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=22.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
|+|+|.||||||+.++.+..+|..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998874
No 105
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=88.17 E-value=0.36 Score=57.36 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
...-|+|+|++|||||++.+.++.++...
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~ 161 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEA 161 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 46789999999999999999999998753
No 106
>PRK06217 hypothetical protein; Validated
Probab=88.07 E-value=0.35 Score=51.62 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
-|+|+|-||||||+.++.+-+.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 39999999999999999887654
No 107
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.01 E-value=0.49 Score=55.68 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=24.9
Q ss_pred hhhhCCCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 286 ~m~~~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.+++.+ ..|+|+|.+|||||+..+.++.|+.
T Consensus 155 ~~v~~~--~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 155 HAVISK--KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHcC--CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 344444 4599999999999999999888764
No 108
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=87.91 E-value=0.48 Score=48.17 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 296 IIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~ 320 (1221)
++|+|++|+|||+.++.++..++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999998864
No 109
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=87.91 E-value=0.77 Score=52.99 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 290 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.+.+.-|-|+|.||||||++++.+...|...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3456777899999999999999887777643
No 110
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=87.87 E-value=0.31 Score=55.19 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
....|+|+|+.|||||++.+.++.++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 4688999999999999999999888764
No 111
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=87.83 E-value=0.31 Score=51.51 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yL 317 (1221)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 568999999999999999998854
No 112
>PRK12377 putative replication protein; Provisional
Probab=87.81 E-value=0.79 Score=51.73 Aligned_cols=45 Identities=27% Similarity=0.314 Sum_probs=33.4
Q ss_pred chhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 275 HVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 275 HiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
|+++.|..-...... ..+.|+|+|.+|+|||+.+..|.++|..-+
T Consensus 85 ~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~g 129 (248)
T PRK12377 85 YALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAKG 129 (248)
T ss_pred HHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 455555544333332 357999999999999999999999998643
No 113
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=87.77 E-value=0.42 Score=50.69 Aligned_cols=51 Identities=27% Similarity=0.352 Sum_probs=36.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHHccCCCccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEEEecCCCceeeeeee
Q 000929 296 IIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQ 375 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~ 375 (1221)
|+|+|+.|+|||+..+.++++|...+- ++|=|+.-..-..|.-+|-.|.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~-------------------------------~v~Gf~t~evr~~g~r~GF~iv 50 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGL-------------------------------PVGGFYTEEVRENGRRIGFDIV 50 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCG-------------------------------GEEEEEEEEEETTSSEEEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCC-------------------------------ccceEEeecccCCCceEEEEEE
Confidence 899999999999999999999875321 2333555555567777787777
Q ss_pred ee
Q 000929 376 TF 377 (1221)
Q Consensus 376 ty 377 (1221)
+.
T Consensus 51 ~l 52 (168)
T PF03266_consen 51 DL 52 (168)
T ss_dssp ET
T ss_pred EC
Confidence 65
No 114
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.54 E-value=0.72 Score=54.90 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=37.6
Q ss_pred HHHHhccCCC----CCchhhHHHHHHHhhhh-CCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 263 ITAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~-~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+.|+-...+ .+|+-.. +.++.. .+-+++++++|+.|+|||+.++.+.+.|-.
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred HHHhCCCchhhccChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 3556544433 4665543 344433 456899999999999999999999998853
No 115
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.52 E-value=0.41 Score=57.05 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+--|+|+|.+|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999999875
No 116
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=87.42 E-value=0.34 Score=48.92 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.2
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa 318 (1221)
||++|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999998876654
No 117
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=87.41 E-value=0.42 Score=48.84 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=21.3
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
+|+|.|.+|||||+.++.+-++|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 118
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=87.18 E-value=0.51 Score=50.36 Aligned_cols=27 Identities=37% Similarity=0.377 Sum_probs=23.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
-|.|+|.||||||+..+.++..|...+
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~g 34 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCARG 34 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhcC
Confidence 678999999999999999999987643
No 119
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.02 E-value=1.1 Score=49.42 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
..+..++|.|++|+|||+.++.+.+++...+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~ 70 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGG 70 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 4567999999999999999999988876543
No 120
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=86.81 E-value=0.42 Score=53.57 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=16.7
Q ss_pred EEEEcCCCCCChhHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFA 313 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~i 313 (1221)
-|||||-||||||.+.+.+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999987765
No 121
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=86.79 E-value=0.9 Score=48.39 Aligned_cols=33 Identities=30% Similarity=0.279 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCCCChhHHHHHHHHHHHHccC
Q 000929 290 DGVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
..+.-.|-++|-||||||+.+..+-+.|...|-
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 455678999999999999999999999888653
No 122
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=86.75 E-value=0.51 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998776
No 123
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=86.73 E-value=0.72 Score=55.12 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=29.5
Q ss_pred HHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 284 y~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+........+.+++|+|.+|+|||.+++.+++.+..
T Consensus 46 l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 46 LRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 334445667789999999999999999999998754
No 124
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.65 E-value=2.8 Score=46.04 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000929 1000 LPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEE 1051 (1221)
Q Consensus 1000 l~~~l~eLq~r~~e~e~~l~~~eeEn~~L~eqL~~~e~~~~e~E~k~k~~ee 1051 (1221)
+.....+++.++...+..+.+++++|+.|+++++..+++...+++++..+++
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666667777777777777766666655555554443
No 125
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=86.53 E-value=0.57 Score=48.16 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=24.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 378999999999999999999999754
No 126
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=86.52 E-value=0.45 Score=53.31 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
--+++-|.||||||++.|+|-+-+-
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 3468899999999999999976554
No 127
>PRK04182 cytidylate kinase; Provisional
Probab=86.39 E-value=0.5 Score=49.57 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=20.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
-|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999987654
No 128
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=86.39 E-value=0.49 Score=48.43 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.5
Q ss_pred EEEcCCCCCChhHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~y 316 (1221)
|+|+|.+|||||+.++.+.+-
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 789999999999999887554
No 129
>PRK06893 DNA replication initiation factor; Validated
Probab=86.24 E-value=1.1 Score=49.67 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=32.8
Q ss_pred CchhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
+|.. .+..+.+.+ ....+.+++|.|.||+|||+.+..+.+.++..+
T Consensus 22 ~~~~-~~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 22 NNLL-LLDSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred ChHH-HHHHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4543 333333333 345667899999999999999999998877643
No 130
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=86.19 E-value=0.91 Score=52.82 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=26.5
Q ss_pred hhhCCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 287 MMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 287 m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+...+....++|+|++|+|||++++.+.+++..
T Consensus 30 ~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 30 AVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334444457999999999999999999988763
No 131
>PRK07667 uridine kinase; Provisional
Probab=86.15 E-value=1.1 Score=48.32 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
--|-|+|-||||||+.++.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999999888865
No 132
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=86.13 E-value=1.9 Score=52.83 Aligned_cols=27 Identities=41% Similarity=0.578 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
-.++|.|++|+|||+.+..+.++|...
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~ 168 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESN 168 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHh
Confidence 359999999999999999999988754
No 133
>PRK08727 hypothetical protein; Validated
Probab=86.11 E-value=1.1 Score=49.95 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=26.8
Q ss_pred CCCceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 290 DGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
....+.|+|+|.||+|||+.+..+...+...+
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34557899999999999999999988877653
No 134
>PRK12608 transcription termination factor Rho; Provisional
Probab=86.00 E-value=0.8 Score=54.41 Aligned_cols=42 Identities=21% Similarity=0.119 Sum_probs=37.3
Q ss_pred hHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 278 AIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 278 avA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+..++...|.--++-|-++|+|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 567788888888889999999999999999999998888765
No 135
>PRK13764 ATPase; Provisional
Probab=85.90 E-value=0.68 Score=58.35 Aligned_cols=27 Identities=33% Similarity=0.585 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345999999999999999999999864
No 136
>PRK14527 adenylate kinase; Provisional
Probab=85.75 E-value=0.7 Score=49.64 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.+.+-|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3568899999999999999999877664
No 137
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=85.73 E-value=0.65 Score=49.30 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yL 317 (1221)
++.|+|.|.+|||||+.++.+...|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999987764
No 138
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=85.50 E-value=0.65 Score=48.75 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa 318 (1221)
|.|||.+|||||+.++.+-.+|-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999988875
No 139
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.43 E-value=0.74 Score=56.94 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=26.3
Q ss_pred HHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 283 Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.+..+.. ...--|+|+|++|||||++...++.++.
T Consensus 233 ~l~~~~~-~~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIR-RPHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHh-cCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4445543 2334689999999999999998888764
No 140
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=85.43 E-value=1.2 Score=51.29 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=28.1
Q ss_pred HHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 282 ~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.....+..-.++|+|+.|+|||+.++.+.+.+.
T Consensus 27 ~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 27 ERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3444455555444689999999999999999988775
No 141
>PRK04040 adenylate kinase; Provisional
Probab=85.37 E-value=0.72 Score=49.79 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
.-|+|+|.+|+|||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999988873
No 142
>PHA00729 NTP-binding motif containing protein
Probab=85.29 E-value=1.2 Score=49.39 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=28.0
Q ss_pred HHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 280 ADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 280 A~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
|....+.+... .-..|+|+|.+|+|||+.+..+.+.|.
T Consensus 5 ~k~~~~~l~~~-~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 5 AKKIVSAYNNN-GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHHhcC-CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33433444333 346899999999999999999988765
No 143
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=85.27 E-value=0.67 Score=49.68 Aligned_cols=21 Identities=43% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEcCCCCCChhHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~y 316 (1221)
|+|.|.||||||+-++.|.+.
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999887
No 144
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.23 E-value=67 Score=37.39 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=34.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 000929 1018 LGQKEEENAALREQLQQYDAKWLEYEAKMKSMEE----MWQKQMASLQMSLAAARKSLA 1072 (1221)
Q Consensus 1018 l~~~eeEn~~L~eqL~~~e~~~~e~E~k~k~~ee----~~~k~~eeLq~~La~akksLa 1072 (1221)
+..++.+...+...++++..+..++|..++..++ .+.++|..|...-...+..|.
T Consensus 144 i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 144 IERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334444444555566666666666666666555 477778877777777776765
No 145
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=85.23 E-value=1.6 Score=56.10 Aligned_cols=53 Identities=21% Similarity=0.365 Sum_probs=37.8
Q ss_pred HHHhccCCC----CCchhhHHHHHHHhhhhC-CCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 264 TAYRQKVMD----SPHVYAIADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~-~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
++||-+..+ ..|+-. .+++++.. +..+++||+|..|.|||++++++.+.|-+-
T Consensus 8 rKYRPqtFdEVIGQe~Vv~----~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVR----ALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred HHhCCCcHHHHcCcHHHHH----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 456544432 466644 44444444 458999999999999999999999988753
No 146
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=85.09 E-value=0.74 Score=49.12 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...|+|.|.||||||+.++.+...|.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999987654
No 147
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=84.91 E-value=0.63 Score=52.69 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHHccC
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
.+..++-|-||||+|||++.+.++.-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 45677889999999999999999987664443
No 148
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=84.68 E-value=0.94 Score=47.67 Aligned_cols=27 Identities=41% Similarity=0.540 Sum_probs=23.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.|+++|++|+|||+++..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999999888654
No 149
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=84.56 E-value=1.1 Score=48.72 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=32.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHHccCCCccHHHHHHhh-----hHHHHHhhcC
Q 000929 296 IIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQT-----NHILEAFGNA 344 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~s-----npiLEAFGNA 344 (1221)
|.|+|..|||||+.++++-+.+-..-=+.+.+-.+++.. ..|.+.||..
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~ 57 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNK 57 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHH
Confidence 889999999999999988765321111233555566542 4577888873
No 150
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=84.48 E-value=1.5 Score=50.68 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.+.+..++++|++|+|||+.++.+.+.+
T Consensus 40 ~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 40 GRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3346788889999999999999998875
No 151
>PRK00698 tmk thymidylate kinase; Validated
Probab=84.41 E-value=1 Score=48.34 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
+-.|+|.|.+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999988643
No 152
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=84.36 E-value=0.88 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999988887754
No 153
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=84.26 E-value=0.76 Score=48.64 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa 318 (1221)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999988764
No 154
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.26 E-value=1.1 Score=55.17 Aligned_cols=54 Identities=28% Similarity=0.389 Sum_probs=38.2
Q ss_pred HHHhccCCC----CCchhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 264 TAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
..|+-.... .+|+-..-..|+ ...+-+|+++++|..|.|||++++++-+.|-+.
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 455544433 466654433333 245668999999999999999999999988654
No 155
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=84.25 E-value=0.48 Score=49.97 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~y 316 (1221)
+++.+++.|.||+|||+....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3589999999999999988877665
No 156
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=84.23 E-value=0.78 Score=53.69 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...|+|+|.+|||||++.+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 467999999999999999999987753
No 157
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.01 E-value=1.1 Score=39.76 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=17.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~y 316 (1221)
..+|+|++|||||+..-.+.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999887665433
No 158
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=83.80 E-value=1 Score=47.13 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
|.|.|.+|||||+.+..++..|...+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999998654
No 159
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=83.71 E-value=1 Score=51.70 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
....|+|.|.+|+|||+++..+..|++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45689999999999999999999998754
No 160
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=83.70 E-value=2.2 Score=44.93 Aligned_cols=53 Identities=30% Similarity=0.355 Sum_probs=41.5
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHHccCCCccHHHHHHhhhHHHHHhhcCccCCCCCCCccccEEEEEecCCCceeeee
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAK 373 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~ 373 (1221)
=.|.|+|..|+|||+.++.+...|..-+- .-|-|+.-.....|+-+|.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~-------------------------------kvgGf~t~EVR~gGkR~GF~ 54 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGY-------------------------------KVGGFITPEVREGGKRIGFK 54 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCc-------------------------------eeeeEEeeeeecCCeEeeeE
Confidence 35999999999999999999998886432 23456766677788888888
Q ss_pred eeee
Q 000929 374 IQTF 377 (1221)
Q Consensus 374 i~ty 377 (1221)
|.+.
T Consensus 55 Ivdl 58 (179)
T COG1618 55 IVDL 58 (179)
T ss_pred EEEc
Confidence 8764
No 161
>PRK08116 hypothetical protein; Validated
Probab=83.55 E-value=1.7 Score=49.53 Aligned_cols=46 Identities=24% Similarity=0.246 Sum_probs=33.2
Q ss_pred chhhHHHHHHHhhhhC-CCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 275 HVYAIADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 275 HiyavA~~Ay~~m~~~-~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
+.|..|..-....... ..+..++|.|.+|+|||+.+..+.++|...
T Consensus 95 ~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 95 KAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455555444433222 345679999999999999999999999865
No 162
>PRK06761 hypothetical protein; Provisional
Probab=83.55 E-value=0.78 Score=52.70 Aligned_cols=26 Identities=42% Similarity=0.548 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.-|+|+|.+|||||+.++.+.++|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999998864
No 163
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.46 E-value=9.1 Score=35.10 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=25.6
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000929 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKM 1046 (1221)
Q Consensus 993 ~e~e~~~l~~~l~eLq~r~~e~e~~l~~~eeEn~~L~eqL~~~e~~~~e~E~k~ 1046 (1221)
++..+..+-..++.|+.++.++..+..++.+++..|+++.+++..+......++
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555554444444555555555444444333333333
No 164
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.40 E-value=1.2 Score=54.61 Aligned_cols=52 Identities=19% Similarity=0.340 Sum_probs=37.1
Q ss_pred HHHhccCCC----CCchhhHHHHHHHhhhhC-CCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 264 TAYRQKVMD----SPHVYAIADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~-~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..|+-.... ..|+... ...+... +..+++|++|+.|.|||++++++.++|-.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 455544332 4676654 4444444 45789999999999999999999998865
No 165
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=83.38 E-value=0.82 Score=48.51 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCCChhHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~ 315 (1221)
...|+|.|+||+||||++=.+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887775
No 166
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=83.37 E-value=1.2 Score=40.88 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.6
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
|+++|..|+|||+++..+...|+..+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g 27 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG 27 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 78899999999999999999999743
No 167
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=83.35 E-value=2.8 Score=51.00 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=33.2
Q ss_pred hhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHH
Q 000929 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 276 iyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~ 315 (1221)
++.+.-+|...++.-.+.|-+.|.|.||+|||+..+.++.
T Consensus 145 ~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~ 184 (444)
T PRK08972 145 PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTR 184 (444)
T ss_pred cccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhcc
Confidence 4556667777777778899999999999999999877764
No 168
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=83.34 E-value=0.81 Score=52.76 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCCChhHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFA 313 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~i 313 (1221)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999887
No 169
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=83.33 E-value=1.7 Score=48.00 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=29.0
Q ss_pred HHHHhhhhCC--CceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 282 TAYNEMMGDG--VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 282 ~Ay~~m~~~~--~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.|...+.... .-..++|.|++|+|||+..+.+..++....
T Consensus 21 ~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~ 62 (219)
T PF00308_consen 21 AAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH 62 (219)
T ss_dssp HHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 4444444432 235799999999999999888888877643
No 170
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=83.32 E-value=2 Score=44.66 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.6
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+=.|+++|+=|||||+-+|-+++.|.-
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45667899999999999999999998874
No 171
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=83.31 E-value=0.93 Score=45.73 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
+....|+++|+=|||||+-+|.+++.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 456889999999999999999988877
No 172
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.27 E-value=6.2 Score=42.99 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000929 999 ALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSME 1050 (1221)
Q Consensus 999 ~l~~~l~eLq~r~~e~e~~l~~~eeEn~~L~eqL~~~e~~~~e~E~k~k~~e 1050 (1221)
.+...+++++.++.+.+..+.+++.|+..|.+.+..+..+...++.++.+++
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 3344444444444444444444444444444444444433333333333333
No 173
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=83.26 E-value=0.68 Score=57.21 Aligned_cols=30 Identities=33% Similarity=0.324 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
..-+..-|-||||||||+++..+|.+|-.-
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 345788899999999999999999998754
No 174
>PRK03839 putative kinase; Provisional
Probab=83.21 E-value=0.94 Score=48.05 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
-|+|.|-+|||||+.++.+-+.|
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999887765
No 175
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.05 E-value=0.9 Score=45.89 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999888777
No 176
>PRK14531 adenylate kinase; Provisional
Probab=83.00 E-value=1.1 Score=48.02 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yL 317 (1221)
|-|+|.|.+|||||+.++.+-+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999998775
No 177
>PRK08356 hypothetical protein; Provisional
Probab=82.98 E-value=0.82 Score=49.39 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAM 314 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il 314 (1221)
--|+|+|.+|||||+.++++-
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999998884
No 178
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.92 E-value=0.91 Score=49.76 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..|.++-.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888654
No 179
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=82.90 E-value=0.95 Score=50.47 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+..++=|.||||||||+.++.++-+..-
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 45688899999999999999998776553
No 180
>PRK14974 cell division protein FtsY; Provisional
Probab=82.90 E-value=2.1 Score=50.49 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
+++..|+++|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999887643
No 181
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=82.89 E-value=2.5 Score=54.90 Aligned_cols=37 Identities=35% Similarity=0.418 Sum_probs=28.4
Q ss_pred HHHhhhh-CCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 283 AYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 283 Ay~~m~~-~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
++...+. ...+.+|+|+|.+|.|||.+++.+++-|..
T Consensus 770 fL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 770 FLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred HHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3444443 444566789999999999999999998864
No 182
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=82.87 E-value=1.3 Score=50.06 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
...-.|++.|++|+|||+.++.+-+.|..++
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3456899999999999999999999886543
No 183
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.81 E-value=1.3 Score=55.07 Aligned_cols=113 Identities=27% Similarity=0.324 Sum_probs=60.6
Q ss_pred hhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccCCCccH-----HHHH---HhhhHHHHHhhcCccC
Q 000929 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGI-----EYEI---LQTNHILEAFGNAKTS 347 (1221)
Q Consensus 276 iyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~~~i-----e~~i---l~snpiLEAFGNAkT~ 347 (1221)
||++-+.-.. --+.||.|||.||+|||||+ .+-|||..-|-+.+++ -.++ --+-.+-|-.|----.
T Consensus 357 vf~~R~~ll~---~ir~n~vvvivgETGSGKTT---Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 357 VFACRDQLLS---VIRENQVVVIVGETGSGKTT---QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred hHHHHHHHHH---HHhhCcEEEEEecCCCCchh---hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 5555444322 23679999999999999996 4678888765432211 1122 1233444444221000
Q ss_pred CCCCCCcc----ccEEEEEecCCCceeeeeeeeeeccCceeee-cCCCCCcc
Q 000929 348 RNDNSSRF----GKLIEIHFSAFGKICGAKIQTFLLEKSRVVQ-LAAGERSY 394 (1221)
Q Consensus 348 rN~NSSRF----GK~i~l~f~~~g~i~Ga~i~tyLLEksRVv~-q~~gERnf 394 (1221)
.=.-|=|| +.-..|-|-.+|-+..-++..-+|+|-.||- -...||+-
T Consensus 431 ~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERsl 482 (1042)
T KOG0924|consen 431 TVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSL 482 (1042)
T ss_pred ccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhccc
Confidence 00112233 2234555556666666666666777766554 34556654
No 184
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=82.75 E-value=1 Score=47.96 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..-|||+|.||||||+.++.+++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 34699999999999999998887643
No 185
>PRK15453 phosphoribulokinase; Provisional
Probab=82.75 E-value=1.1 Score=51.46 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
+.=-|.|+|-||||||+.++.+.+-|
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34468999999999999988776544
No 186
>PRK14528 adenylate kinase; Provisional
Probab=82.71 E-value=1.1 Score=48.19 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yL 317 (1221)
+-|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999987765
No 187
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=82.71 E-value=0.95 Score=53.17 Aligned_cols=27 Identities=30% Similarity=0.229 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999887654
No 188
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=82.69 E-value=0.97 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=22.1
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
|+|+|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999998864
No 189
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=82.67 E-value=0.69 Score=54.72 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
--++-+-||||||||.|+..+|+-|..-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 3567888999999999999999999864
No 190
>PRK13342 recombination factor protein RarA; Reviewed
Probab=82.64 E-value=1.4 Score=53.38 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=33.5
Q ss_pred CchhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.|+... ....+.++..+...+|||.|++|+|||+.++.+.+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 455443 3556677777778899999999999999999987654
No 191
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=82.64 E-value=0.99 Score=49.16 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.++..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999998886543
No 192
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=82.64 E-value=1.6 Score=46.58 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...-.|+|+|.||||||+.++.+..+|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999988863
No 193
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=82.64 E-value=1 Score=48.23 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~ 315 (1221)
...+.+.|.|++|||||+..++++.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999998888754
No 194
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=82.55 E-value=1 Score=49.27 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+.++-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988887654
No 195
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=82.47 E-value=1.2 Score=47.26 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=22.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 296 IIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~ 320 (1221)
|+|.|..|||||+.++.+-++|...
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~ 27 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEAR 27 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999999999998753
No 196
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=82.47 E-value=0.95 Score=49.23 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=30.1
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHHccC---CCccHHHHHHhhh-H----HHHHhhc
Q 000929 296 IIISGESGAGKTETAKFAMQYLAALGG---GSEGIEYEILQTN-H----ILEAFGN 343 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~~~---~~~~ie~~il~sn-p----iLEAFGN 343 (1221)
|.|+|.+|||||+.++++-.+ +. +.+.+...+++-+ + |.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~ 53 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GAFGISADRLAKRYTEPDSPILSELVSLLGP 53 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CCEEEecchHHHHHHhcCcHHHHHHHHHhCh
Confidence 789999999999998866543 22 2345666666543 3 6667776
No 197
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.41 E-value=1.2 Score=51.46 Aligned_cols=46 Identities=26% Similarity=0.260 Sum_probs=33.3
Q ss_pred CchhhHHHHHHHhhhhC------CCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 274 PHVYAIADTAYNEMMGD------GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 274 PHiyavA~~Ay~~m~~~------~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
-|+|.-|..|..--... .-|--|++.|..|.|||..||.+.|.|.-
T Consensus 152 ~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 152 ERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 45666665554332211 24678999999999999999999999874
No 198
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=82.35 E-value=0.8 Score=53.28 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...|+|+|.+|||||+..+.++.++.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC
Confidence 46899999999999999999887764
No 199
>PRK11637 AmiB activator; Provisional
Probab=82.23 E-value=12 Score=45.71 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000929 1022 EEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASL 1060 (1221)
Q Consensus 1022 eeEn~~L~eqL~~~e~~~~e~E~k~k~~ee~~~k~~eeL 1060 (1221)
..++..++.++...+.++.+.+.++...++.+..+.+.+
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 200
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=82.23 E-value=0.73 Score=57.43 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.+.+.|.|.|+||||||+..|.++.++.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999999987654
No 201
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=82.22 E-value=1 Score=52.93 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.||||||||+..+.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 456899999999999999999887654
No 202
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=82.17 E-value=1.1 Score=49.36 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356899999999999999999988765
No 203
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=82.08 E-value=1.3 Score=48.69 Aligned_cols=50 Identities=26% Similarity=0.343 Sum_probs=31.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHccCCCccHHHHHHhh----hHHHHHhhcC
Q 000929 295 SIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQT----NHILEAFGNA 344 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~s----npiLEAFGNA 344 (1221)
.|.|+|..|||||+.++++.+.|-.---..+.+-.+++.. .-|.+.||..
T Consensus 8 ~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~ 61 (204)
T PRK14733 8 PIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDE 61 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHH
Confidence 5889999999999998887754321101123455555543 2466788874
No 204
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=82.05 E-value=1 Score=50.49 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=23.2
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
=.|+|-|.||||||+..+.++.++..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 46899999999999999999988765
No 205
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=82.03 E-value=0.93 Score=45.47 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
..+.+.|.|++|||||+..+.+...+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 46789999999999999887765443
No 206
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=82.02 E-value=1.1 Score=48.65 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.++-.+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999988886544
No 207
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.96 E-value=1.1 Score=48.78 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.++-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999988886543
No 208
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.95 E-value=1.1 Score=51.36 Aligned_cols=74 Identities=24% Similarity=0.389 Sum_probs=47.6
Q ss_pred hcCccccccCCceEeeCCCCCCCCCChHHHHHHhccCC--------CCCchhhHHHHHHHhhhhCCCceEEEEcCCCCCC
Q 000929 234 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--------DSPHVYAIADTAYNEMMGDGVNQSIIISGESGAG 305 (1221)
Q Consensus 234 ~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~--------~~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAG 305 (1221)
.-|--||..|.-=+-||-|+...-|+- .++--.. .-|-|+. . +....+--|+++|.+|||
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~~~a~----vlR~Ip~~i~~~e~LglP~i~~-------~-~~~~~~GLILVTGpTGSG 137 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRGGYAL----VLRLIPSKIPTLEELGLPPIVR-------E-LAESPRGLILVTGPTGSG 137 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcCCcEE----EEeccCccCCCHHHcCCCHHHH-------H-HHhCCCceEEEeCCCCCc
Confidence 446668888888888888876533221 0110010 1143332 2 223456789999999999
Q ss_pred hhHHHHHHHHHHHH
Q 000929 306 KTETAKFAMQYLAA 319 (1221)
Q Consensus 306 KTet~K~il~yLa~ 319 (1221)
||+|.-.++.|+-.
T Consensus 138 KSTTlAamId~iN~ 151 (353)
T COG2805 138 KSTTLAAMIDYINK 151 (353)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999875
No 209
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=81.94 E-value=1.1 Score=49.19 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..|.++..+.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3568899999999999999999876543
No 210
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=81.94 E-value=1.5 Score=46.19 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
+.|.|+|.||||||+.++.++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999987654
No 211
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.88 E-value=11 Score=42.85 Aligned_cols=68 Identities=10% Similarity=0.285 Sum_probs=39.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000929 994 QEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQ 1061 (1221)
Q Consensus 994 e~e~~~l~~~l~eLq~r~~e~e~~l~~~eeEn~~L~eqL~~~e~~~~e~E~k~k~~ee~~~k~~eeLq 1061 (1221)
+.+....+..++.|+..+.+....+.+.++++..++.+++.++.++.+.++.+.+.++.+.+++..++
T Consensus 44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666666666666666666666666666665555555555555443
No 212
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=81.88 E-value=0.86 Score=53.96 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=26.8
Q ss_pred CCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 290 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
-++.|++=|-||||||||+....+++-+.+-
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 3678999999999999999999988877654
No 213
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=81.87 E-value=2.5 Score=48.36 Aligned_cols=31 Identities=29% Similarity=0.342 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
+..+.|++.|.+|+|||+++-.+..+|+..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 3467999999999999999999888887654
No 214
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=81.84 E-value=1.5 Score=51.30 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
+..+.|.+.|.+|||||+++..+..+|...+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999988654
No 215
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=81.84 E-value=0.8 Score=56.62 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+-.++=|.||||||||+++|.++..+--
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3466778899999999999999887654
No 216
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=81.80 E-value=1 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yL 317 (1221)
+.||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 579999999999999999987765
No 217
>PRK10436 hypothetical protein; Provisional
Probab=81.71 E-value=1 Score=55.31 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=27.1
Q ss_pred HHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 283 Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.++.+.. ...--|+|+|.+|||||+|...++.++..
T Consensus 209 ~l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 209 QFRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred HHHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence 3444442 33457899999999999999988888753
No 218
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=81.69 E-value=1 Score=52.99 Aligned_cols=27 Identities=41% Similarity=0.525 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.||||||||+..+.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 456899999999999999999887654
No 219
>PRK09039 hypothetical protein; Validated
Probab=81.67 E-value=43 Score=39.81 Aligned_cols=37 Identities=8% Similarity=0.187 Sum_probs=24.7
Q ss_pred CCCccCCCccchHhHHHHHHHHhhcccccccceeeec
Q 000929 1121 GSGRESNGSLTAVNHLTKEFEQRRQNFDDDAKALIEI 1157 (1221)
Q Consensus 1121 ~~~~~~~~~~~~v~~l~~e~~~~~q~f~~~a~~~~ev 1157 (1221)
|+..-.+.+...+..++..+.....-..++....|+|
T Consensus 231 gsa~L~~~~~~~L~~ia~~l~~~~~~~p~~i~~~I~I 267 (343)
T PRK09039 231 GSAELNPEGQAEIAKLAAALIELAKEIPPEINWVLRV 267 (343)
T ss_pred CCcccCHHHHHHHHHHHHHHHHhhhccCCcCCeeEEE
Confidence 4444556677778888888887655556666655555
No 220
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=81.65 E-value=1.1 Score=48.84 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.++-.+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 356899999999999999988886544
No 221
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.61 E-value=1.8 Score=54.26 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=38.0
Q ss_pred HHHhccCCC----CCchhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 264 TAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
..||-.... .+|+...-..++. ..+-.+++|++|+.|.|||+.++.+.++|-..
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~---~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALE---TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 455544432 4777654333332 33567889999999999999999999998753
No 222
>PRK13768 GTPase; Provisional
Probab=81.60 E-value=1.3 Score=50.03 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=24.4
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.|+|+|.+|+|||+.+..+..+|+..+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 589999999999999999999998644
No 223
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=81.59 E-value=1.5 Score=43.71 Aligned_cols=26 Identities=46% Similarity=0.737 Sum_probs=24.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
|+++|.+|+|||..+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998743
No 224
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=81.47 E-value=1.2 Score=48.27 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..+.++-.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35688999999999999998888643
No 225
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=81.45 E-value=1.1 Score=52.71 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 457899999999999999999987654
No 226
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=81.40 E-value=1.8 Score=54.24 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=26.1
Q ss_pred hhCCCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 288 ~~~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
+....+|.|+|+||+|+|||..++.+.++.-
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456689999999999999999999977643
No 227
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=81.40 E-value=1.5 Score=54.55 Aligned_cols=45 Identities=16% Similarity=0.325 Sum_probs=34.0
Q ss_pred CCchhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 273 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.+|+...-..| +...+..|+++++|+.|.|||++++++.+.|-+.
T Consensus 26 q~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 36655433333 2345668999999999999999999999988653
No 228
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=81.33 E-value=1.2 Score=48.50 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+.+.-.
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45788999999999999988887654
No 229
>PRK09099 type III secretion system ATPase; Provisional
Probab=81.29 E-value=4.1 Score=49.71 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=30.5
Q ss_pred hhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 277 YAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 277 yavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
+.+.-.+...++.-.+.|.+.|.|.||+|||+..+.+..+
T Consensus 147 l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~ 186 (441)
T PRK09099 147 LPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARG 186 (441)
T ss_pred cCCCceeccceeeecCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344456666666678999999999999999987766543
No 230
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.29 E-value=0.84 Score=50.46 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988886554
No 231
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=81.29 E-value=2 Score=51.04 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=32.2
Q ss_pred HHHHHHhhhhC-CCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 280 ADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 280 A~~Ay~~m~~~-~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
|...+..+... +-+++++|+|+.|.|||+.++.+.++|.+
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 34455555544 45899999999999999999999998876
No 232
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.27 E-value=1.2 Score=49.57 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..|.++-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999988886543
No 233
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=81.26 E-value=1.3 Score=50.99 Aligned_cols=28 Identities=36% Similarity=0.444 Sum_probs=25.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHccC
Q 000929 295 SIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
-|+|.|++|+|||+.++.+-+++...+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987653
No 234
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=81.19 E-value=1.6 Score=55.31 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=28.4
Q ss_pred hCCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 289 ~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
..+..|++||+|.+|.|||++++++.+.|-+.
T Consensus 42 ~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 42 TGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 45568999999999999999999999998754
No 235
>PLN03025 replication factor C subunit; Provisional
Probab=81.16 E-value=2 Score=50.10 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=29.3
Q ss_pred HHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 283 Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..+.+...+.-..++++|.+|+|||++++.+.+.|.
T Consensus 24 ~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 24 RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 345556666666799999999999999999998874
No 236
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=81.11 E-value=86 Score=35.40 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=46.7
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000929 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARK 1069 (1221)
Q Consensus 993 ~e~e~~~l~~~l~eLq~r~~e~e~~l~~~eeEn~~L~eqL~~~e~~~~e~E~k~k~~ee~~~k~~eeLq~~La~akk 1069 (1221)
+..++..+......|+..+..+...+..++.+...+++++...+....++++.+........+....+..+-+..+.
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~ 170 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555666666666777777777777777777666666666666665555554433
No 237
>PRK06620 hypothetical protein; Validated
Probab=81.09 E-value=2 Score=47.41 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCChhHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~ 315 (1221)
.+++|.|++|+|||+.++.+.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~ 66 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQN 66 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHh
Confidence 7899999999999988886433
No 238
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.09 E-value=1.3 Score=47.07 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..|.++-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999988886543
No 239
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=81.04 E-value=1.5 Score=47.01 Aligned_cols=47 Identities=21% Similarity=0.442 Sum_probs=32.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHH-HHccCCCccHHHHHHhhh-----HHHHHhhc
Q 000929 296 IIISGESGAGKTETAKFAMQYL-AALGGGSEGIEYEILQTN-----HILEAFGN 343 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL-a~~~~~~~~ie~~il~sn-----piLEAFGN 343 (1221)
|.|+|-.|||||+.++++-+.. +.+- ..+.+-.++++.+ .|.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i-~~D~~~~~~~~~~~~~~~~i~~~fg~ 54 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI-DADKIAHQVVEKGSPAYEKIVDHFGA 54 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE-eCCHHHHHHHhcCChHHHHHHHHHCH
Confidence 8899999999999988776543 2111 1245666677643 37888983
No 240
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=81.03 E-value=1.1 Score=48.27 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~y 316 (1221)
---+.++|.||||||+..|+|+.-
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 345788999999999999998654
No 241
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=80.91 E-value=1.4 Score=46.50 Aligned_cols=27 Identities=37% Similarity=0.351 Sum_probs=22.6
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
+++|.|++|+|||..+-.++...+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999998888877777544
No 242
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=80.86 E-value=1.2 Score=52.33 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+-|.||||||||+.++.|+..+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456889999999999999999998765
No 243
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=80.81 E-value=1.5 Score=46.87 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
...+.|+|.|.+|.|||..+..+.+.++.-
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~ 74 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK 74 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC
Confidence 356889999999999999999999988863
No 244
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=80.79 E-value=1.4 Score=46.25 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.2
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
+.|+|+|-+|||||+.++.+-+.|-
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987763
No 245
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=80.68 E-value=1.3 Score=48.46 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~ 315 (1221)
...+.+.|.|+||||||+..+.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999998887753
No 246
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=80.60 E-value=1.2 Score=48.51 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+++.-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35688999999999999998887544
No 247
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=80.57 E-value=1.9 Score=49.91 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.+.+=.|+|+|.||||||+.+..+..+|
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567799999999999999999999888
No 248
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=80.52 E-value=1.2 Score=47.58 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
-|||+|.|||||++.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999888887763
No 249
>PRK09087 hypothetical protein; Validated
Probab=80.48 E-value=2 Score=47.70 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~y 316 (1221)
.+..++|.|+||+|||+.+..+...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh
Confidence 4667999999999999988866543
No 250
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=80.48 E-value=1.1 Score=56.56 Aligned_cols=28 Identities=21% Similarity=0.515 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.+.|.|.|.|+||||||+..|+++..+.
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4679999999999999999999988764
No 251
>PRK00023 cmk cytidylate kinase; Provisional
Probab=80.44 E-value=1.3 Score=49.10 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
+-.|.|+|.+|||||+.++.+.+.|-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988874
No 252
>PRK02496 adk adenylate kinase; Provisional
Probab=80.42 E-value=1.4 Score=46.97 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|.|.+|||||+.++.+.+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998766
No 253
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=80.34 E-value=2 Score=45.91 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=29.8
Q ss_pred HHhhhh-CCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 284 YNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 284 y~~m~~-~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
++.+.. .+-++++++.|+.|.|||+.++.+.+.|...
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 344443 4567999999999999999999999988753
No 254
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=80.34 E-value=1.2 Score=47.06 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=19.8
Q ss_pred CceEEEEcCCCCCChhHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~ 315 (1221)
.--.|.|+|.||+|||+..|.+..
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHh
Confidence 346899999999999998777643
No 255
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=80.32 E-value=1.3 Score=50.79 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=19.1
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|.|+|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999998887655
No 256
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.21 E-value=1.3 Score=49.00 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..|.++-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356889999999999999998886544
No 257
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=80.21 E-value=1.4 Score=48.99 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+.+.-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999988887644
No 258
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=80.09 E-value=1.4 Score=50.48 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
-.-|+|+|+||+||||++=-+++-=.
T Consensus 145 GvGVLItG~SG~GKSElALeLi~rgh 170 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKRGH 170 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHhcc
Confidence 36799999999999999877766533
No 259
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.09 E-value=2 Score=52.95 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=35.8
Q ss_pred HHHhccCCC----CCchhhHHHHHHHhhhh-CCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 264 TAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~-~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..||-...+ .+|+- ..++.+.. .+-++++|++|+.|.|||++++.+.+.|-.
T Consensus 6 ~kyRP~~~~divGq~~i~----~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVK----KLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHHH----HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 445544432 46763 33444444 445688999999999999999999887653
No 260
>PLN02796 D-glycerate 3-kinase
Probab=79.97 E-value=1.3 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=20.6
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa 318 (1221)
-|-|+|.||||||+.++.|...|.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 478899999999999998877664
No 261
>PRK10646 ADP-binding protein; Provisional
Probab=79.94 E-value=3.1 Score=43.55 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.-.|++.|+-|||||+-+|.+++.|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34788999999999999999988873
No 262
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=79.92 E-value=1.4 Score=48.99 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999988876443
No 263
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=79.86 E-value=1.3 Score=48.07 Aligned_cols=34 Identities=32% Similarity=0.498 Sum_probs=27.1
Q ss_pred HHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 284 y~~m~~~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
....+..+.++.|+|.|..|+|||...+.+++.+
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 3444555678999999999999999999998877
No 264
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.84 E-value=18 Score=39.90 Aligned_cols=6 Identities=33% Similarity=0.927 Sum_probs=2.5
Q ss_pred HHHHHH
Q 000929 956 GWLVRK 961 (1221)
Q Consensus 956 g~laRR 961 (1221)
||...+
T Consensus 78 GWV~~~ 83 (206)
T PRK10884 78 AWIPLK 83 (206)
T ss_pred EeEEHH
Confidence 444433
No 265
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.76 E-value=1.9 Score=53.65 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=33.5
Q ss_pred CCchhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 273 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
..|+...-..++. ..+-.++++++|++|+|||++++.+.+.|-..
T Consensus 19 q~~v~~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3566444433332 34567899999999999999999999988754
No 266
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=79.76 E-value=1.5 Score=47.65 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..+.+.-.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888643
No 267
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.72 E-value=2.1 Score=53.57 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=32.9
Q ss_pred CCchhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 273 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+|+-..-..++. ..+-.+++|++|+.|.|||++++.+.+.|-.
T Consensus 21 q~~v~~~L~~~i~---~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRALTNALE---QQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHHHHHHHH---cCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4666543333332 3456789999999999999999999998864
No 268
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.69 E-value=1.4 Score=47.98 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.. +.+.|.|++|||||+..+.++-.+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45 899999999999999988886443
No 269
>PRK14530 adenylate kinase; Provisional
Probab=79.69 E-value=1.5 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa 318 (1221)
-|+|.|.+|||||+.++.+.+.+-
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999987763
No 270
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.68 E-value=20 Score=36.18 Aligned_cols=77 Identities=14% Similarity=0.265 Sum_probs=39.3
Q ss_pred CcHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 000929 992 VPQEQVQALPTALAELQRRVLKAEATLGQKEEENAAL---REQLQQYDAKWLEYEAKMKSMEEM---WQKQMASLQMSLA 1065 (1221)
Q Consensus 992 ~~e~e~~~l~~~l~eLq~r~~e~e~~l~~~eeEn~~L---~eqL~~~e~~~~e~E~k~k~~ee~---~~k~~eeLq~~La 1065 (1221)
.++.++..++..+..++.....+.+++..+..+++.+ ..++..++.+..+++.+...+-+. ..++.++|++-++
T Consensus 27 ~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~ 106 (120)
T PF12325_consen 27 RLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3455566666666666666666666665554444333 333444444455555554444442 3344445555554
Q ss_pred HHH
Q 000929 1066 AAR 1068 (1221)
Q Consensus 1066 ~ak 1068 (1221)
..|
T Consensus 107 DlK 109 (120)
T PF12325_consen 107 DLK 109 (120)
T ss_pred HHH
Confidence 443
No 271
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=79.66 E-value=1.4 Score=48.84 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..|.++-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 35688999999999999998888643
No 272
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=79.61 E-value=1.3 Score=57.12 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..|.|-|.|+||||||+.+|+++.++.-
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3488999999999999999999876553
No 273
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.56 E-value=1.5 Score=48.07 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~ 315 (1221)
...+.+.|.|++|||||+..+++.-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999999988853
No 274
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=79.52 E-value=1.5 Score=48.87 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..|.+.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999998887543
No 275
>PRK13947 shikimate kinase; Provisional
Probab=79.49 E-value=1.6 Score=45.64 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
.|+|.|-+|||||+.++.+-+-|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 49999999999999999886654
No 276
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=79.48 E-value=1.5 Score=47.65 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..|.+.-.
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999988888644
No 277
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.48 E-value=1.4 Score=53.79 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=28.0
Q ss_pred HHHHHhhhhCCCceE-EEEcCCCCCChhHHHHHHHHHHHH
Q 000929 281 DTAYNEMMGDGVNQS-IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 281 ~~Ay~~m~~~~~nQs-IiisGESGAGKTet~K~il~yLa~ 319 (1221)
...++.+.. ++|. |+++|..|||||+|..-++++|-+
T Consensus 247 ~~~~~~~~~--~p~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 247 LARLLRLLN--RPQGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred HHHHHHHHh--CCCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 345555553 3454 567999999999999999999875
No 278
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=79.40 E-value=1.6 Score=45.97 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..+.++-.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4578899999999999999988876543
No 279
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.35 E-value=1.5 Score=47.56 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..+.+.-.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35678899999999999999888643
No 280
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=79.32 E-value=1.5 Score=47.83 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~ 315 (1221)
...+.+.|.|+||||||+..|.+.-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578899999999999999888854
No 281
>PRK06315 type III secretion system ATPase; Provisional
Probab=79.30 E-value=3.2 Score=50.69 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=33.0
Q ss_pred hhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 277 YAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 277 yavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
+.+.-+|...++.-++.|.|.|.|+||+|||+..+.++.++
T Consensus 148 l~TGi~aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 148 LSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred ccceEEEEeccccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 34444556666666889999999999999999999998766
No 282
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=79.27 E-value=1.5 Score=48.54 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.++-.+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999887554
No 283
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=79.22 E-value=1.6 Score=47.35 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=20.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.++|.|.||||||...+.++.-|+.
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHH
Confidence 5999999999999999998888875
No 284
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=79.18 E-value=1.4 Score=55.71 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.--|+|+|..|||||+|...+|.++.
T Consensus 316 ~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 316 QGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 45688999999999999988888874
No 285
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=79.18 E-value=2.2 Score=54.32 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=28.2
Q ss_pred HhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 285 ~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+.....++.|+|.|++|+|||+.++.+......
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 33445567889999999999999999999877543
No 286
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=79.18 E-value=38 Score=31.10 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000929 1003 ALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEE 1051 (1221)
Q Consensus 1003 ~l~eLq~r~~e~e~~l~~~eeEn~~L~eqL~~~e~~~~e~E~k~k~~ee 1051 (1221)
.++.|+.++..+-..+..++.|++.|+++...+.....++......+.+
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777777777666665555544444443
No 287
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=79.16 E-value=1.5 Score=47.47 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..+.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35688999999999999998888543
No 288
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=79.15 E-value=1.6 Score=47.57 Aligned_cols=26 Identities=19% Similarity=0.521 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..+.++..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46788999999999999998887643
No 289
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=79.11 E-value=2.4 Score=49.35 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=31.6
Q ss_pred chhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 275 HVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 275 HiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.+..+.+.-+.....-.....|+|+|-+|||||+.++.+-+.|
T Consensus 115 ~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 115 RVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred HHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3444444444444455678899999999999999999987655
No 290
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=79.07 E-value=1.9 Score=52.69 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=26.9
Q ss_pred chhhHHHHHHHhhhhC-----CCceEEEEcCCCCCChhHHHH
Q 000929 275 HVYAIADTAYNEMMGD-----GVNQSIIISGESGAGKTETAK 311 (1221)
Q Consensus 275 HiyavA~~Ay~~m~~~-----~~nQsIiisGESGAGKTet~K 311 (1221)
||=.-.+.-+...+.+ ...+.|.|+|+||||||+..+
T Consensus 9 hi~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 9 YVKRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred eechHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 3333444555555544 578999999999999999988
No 291
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=79.04 E-value=1.5 Score=48.91 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+.+.-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45788999999999999998887644
No 292
>PLN02318 phosphoribulokinase/uridine kinase
Probab=79.03 E-value=2.3 Score=53.39 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=31.2
Q ss_pred CchhhHHHHHHHhhhhCCC-ceEEEEcCCCCCChhHHHHHHHHH
Q 000929 274 PHVYAIADTAYNEMMGDGV-NQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~-nQsIiisGESGAGKTet~K~il~y 316 (1221)
-|=|-++-+|-+-+..... .--|-|.|.||||||+.++.|...
T Consensus 45 d~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 45 EKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred ccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 4566677777766665332 346678999999999999888654
No 293
>PRK10908 cell division protein FtsE; Provisional
Probab=78.98 E-value=1.6 Score=47.94 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+.+.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999998887643
No 294
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.92 E-value=1.6 Score=46.02 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988877543
No 295
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=78.92 E-value=1.5 Score=46.50 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=20.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~ 315 (1221)
..+..|+|.||+|+||+..++.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999888854
No 296
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=78.91 E-value=1.9 Score=46.18 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..-|+|.|-.|||||+.++.+-++|..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356999999999999999999888764
No 297
>PF13479 AAA_24: AAA domain
Probab=78.86 E-value=1.3 Score=48.54 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=18.5
Q ss_pred CceEEEEcCCCCCChhHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFA 313 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~i 313 (1221)
++..|+|.|+||+|||+.++.+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5788999999999999765544
No 298
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=78.85 E-value=1.6 Score=47.76 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+.++-.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998888543
No 299
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=78.84 E-value=1.6 Score=48.22 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999886544
No 300
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=78.82 E-value=16 Score=45.74 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=14.4
Q ss_pred chHhHHHHHHHHhhccccccccee
Q 000929 1131 TAVNHLTKEFEQRRQNFDDDAKAL 1154 (1221)
Q Consensus 1131 ~~v~~l~~e~~~~~q~f~~~a~~~ 1154 (1221)
.+|..--+|+++.-.--+++|-+.
T Consensus 280 e~~~~~~~~~~~~i~~~g~~~~~~ 303 (514)
T TIGR03319 280 EMVEKATKEVDNAIREEGEQAAFD 303 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777666555555443
No 301
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=78.82 E-value=1.6 Score=48.55 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..|.++-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998887644
No 302
>PRK13695 putative NTPase; Provisional
Probab=78.81 E-value=1.7 Score=45.89 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.6
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
|+|+|++|+|||+..+.+...|..
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999888764
No 303
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=78.79 E-value=2.4 Score=51.45 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...|+|.|++|+|||+.++.+-+.|
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999886554
No 304
>PF13173 AAA_14: AAA domain
Probab=78.75 E-value=1.9 Score=43.22 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
++.++|.|.-|+|||+.++.+++++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998876
No 305
>PRK12704 phosphodiesterase; Provisional
Probab=78.68 E-value=16 Score=45.73 Aligned_cols=7 Identities=29% Similarity=0.420 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 000929 1135 HLTKEFE 1141 (1221)
Q Consensus 1135 ~l~~e~~ 1141 (1221)
..-+||+
T Consensus 290 ~~~~~~~ 296 (520)
T PRK12704 290 KARKEVD 296 (520)
T ss_pred HHHHHHH
Confidence 3334444
No 306
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=78.64 E-value=22 Score=32.02 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000929 1005 AELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASL 1060 (1221)
Q Consensus 1005 ~eLq~r~~e~e~~l~~~eeEn~~L~eqL~~~e~~~~e~E~k~k~~ee~~~k~~eeL 1060 (1221)
..|+.++..+-....+++.||..|++++.....+...+.+++.........+++-|
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666666677777777777777777777666666666666555555554
No 307
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=78.61 E-value=1.6 Score=47.98 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999988886543
No 308
>PRK06526 transposase; Provisional
Probab=78.53 E-value=1.9 Score=48.94 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
..+.|+|.|.+|+|||+.+..+...++..+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g 126 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG 126 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC
Confidence 456799999999999999999988887643
No 309
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=78.50 E-value=1.7 Score=47.63 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..+.+...
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998887543
No 310
>PRK11637 AmiB activator; Provisional
Probab=78.49 E-value=14 Score=45.00 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=27.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000929 998 QALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMA 1058 (1221)
Q Consensus 998 ~~l~~~l~eLq~r~~e~e~~l~~~eeEn~~L~eqL~~~e~~~~e~E~k~k~~ee~~~k~~e 1058 (1221)
......+.+++.++.+++.++..++.++..+..++...++++.+.+.++...++++....+
T Consensus 57 ~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 57 AAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444445455555554454444444444444333333
No 311
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=78.45 E-value=2.5 Score=47.97 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=29.4
Q ss_pred CchhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
|++=.+-+.+...+.. +..|+|.|++|+|||+.++.+-+.
T Consensus 5 ~~~~~l~~~~l~~l~~---g~~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS---GYPVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred HHHHHHHHHHHHHHhc---CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 4454555666555543 578999999999999999887653
No 312
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=78.43 E-value=1.7 Score=48.24 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.0
Q ss_pred CCceEEEEcCCCCCChhHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKF 312 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~ 312 (1221)
...+.+.|.|+||||||+.+..
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~~ 40 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFD 40 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHHH
Confidence 4678999999999999999743
No 313
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=78.41 E-value=1.7 Score=47.98 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..+.+.-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45688999999999999988887644
No 314
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=78.34 E-value=1.7 Score=48.17 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+.+.-.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999998888643
No 315
>PRK05642 DNA replication initiation factor; Validated
Probab=78.34 E-value=3.5 Score=46.02 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=23.0
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
-.++|.|.+|+|||+.+..+..++...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~ 72 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR 72 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 468999999999999999888877643
No 316
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=78.31 E-value=1.8 Score=47.86 Aligned_cols=24 Identities=46% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa 318 (1221)
.|.|.|.||||||+.++.+...|-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987654
No 317
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.28 E-value=1.7 Score=49.50 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999988876443
No 318
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=78.24 E-value=1.1 Score=45.66 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=20.4
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
..+..|+|+||+|+||+..++.+-.+
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 55788999999999999887766544
No 319
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=78.24 E-value=1.7 Score=49.08 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.++-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999887544
No 320
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=78.23 E-value=1.7 Score=48.82 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..+.+.-.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45688999999999999999988654
No 321
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=78.20 E-value=2.7 Score=49.84 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=27.0
Q ss_pred hCCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 289 ~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
-+..-..|+|+|++|+|||+.++.+-+||-..
T Consensus 34 ~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~ 65 (350)
T CHL00081 34 IDPKIGGVMIMGDRGTGKSTTIRALVDLLPEI 65 (350)
T ss_pred cCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 34445789999999999999999999998753
No 322
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=78.19 E-value=1.4 Score=48.36 Aligned_cols=44 Identities=32% Similarity=0.456 Sum_probs=33.1
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHHHccCCCccHHHHHHhhhHHHHHhh
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFG 342 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~snpiLEAFG 342 (1221)
+=.|+|.|.=|+|||+.++.+-+.|-+ .+..++..=||+|+-|=
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~------~~~~E~vednp~L~~FY 47 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF------KVFYELVEDNPFLDLFY 47 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC------ceeeecccCChHHHHHH
Confidence 457999999999999999999888763 23344555667777664
No 323
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=78.17 E-value=1.8 Score=46.92 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=21.6
Q ss_pred hCCCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 289 GDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 289 ~~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
....+..|||.|.+|||||+....++..+.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~ 40 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG 40 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence 346789999999999999998887766553
No 324
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=78.16 E-value=1.8 Score=47.17 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.++-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999988887543
No 325
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=78.13 E-value=4.3 Score=49.60 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=35.0
Q ss_pred chhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 275 HVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 275 HiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
.++.+.-.|...++.-++.|.|.|.|.||+|||+..+.+..+
T Consensus 150 ~~l~TGi~aID~l~~I~~GqrigI~G~sG~GKSTLl~~I~g~ 191 (451)
T PRK05688 150 EPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRF 191 (451)
T ss_pred CCcccceeeecceEEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 466677788888887889999999999999999998777543
No 326
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=78.12 E-value=1.9 Score=46.91 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=32.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHccCCCccHHHHHHhh-----hHHHHHhhcC
Q 000929 295 SIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQT-----NHILEAFGNA 344 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~s-----npiLEAFGNA 344 (1221)
.|.|+|.+|||||+.++++..+=+.+= +.+.+...+++. ..|.+.||..
T Consensus 3 ~igitG~igsGKst~~~~l~~~g~~vi-d~D~i~~~~~~~~~~~~~~l~~~fg~~ 56 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSSEGFLIV-DADQVARDIVEPGQPALAELAEAFGDD 56 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCeEE-eCcHHHHHHHhcCCHHHHHHHHHhCcc
Confidence 589999999999999988875311110 123555556553 4567777763
No 327
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=78.08 E-value=1.8 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=20.3
Q ss_pred CCceEEEEcCCCCCChhHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAM 314 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il 314 (1221)
....-+.|.|+||||||+..+.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 345778999999999999998774
No 328
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=78.08 E-value=1.7 Score=47.75 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.0
Q ss_pred CceEEEEcCCCCCChhHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFA 313 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~i 313 (1221)
+-.-++|.|.||||||+..+.+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999876544
No 329
>PRK05922 type III secretion system ATPase; Validated
Probab=78.07 E-value=5.1 Score=48.79 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=35.0
Q ss_pred chhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 275 HVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 275 HiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.++.+.-+|...++.-.+.|-|.|.|.+|+|||+..+.+..+.
T Consensus 139 e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 139 EIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred eecCCCceeecceEEEcCCcEEEEECCCCCChHHHHHHHhccC
Confidence 3455666777777777899999999999999999988887654
No 330
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=78.04 E-value=1.7 Score=48.10 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.+|||||+..+.+.-.+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999888886544
No 331
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=77.95 E-value=1.7 Score=50.45 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~y 316 (1221)
.-.|+|+|+||+||||++=-+++.
T Consensus 146 G~GvLi~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 146 GIGVLITGESGIGKSETALELIKR 169 (308)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 368999999999999999888775
No 332
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=77.92 E-value=2 Score=46.79 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
++.|++.|.+|+|||+|+-.+-.|+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4679999999999999987777777654
No 333
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=77.91 E-value=1.5 Score=48.34 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..|.+...+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 467899999999999999999887654
No 334
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.91 E-value=2.4 Score=53.72 Aligned_cols=53 Identities=26% Similarity=0.388 Sum_probs=38.1
Q ss_pred HHHHhccCCC----CCchhhHHHHHHHhhhhC-CCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 263 ITAYRQKVMD----SPHVYAIADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~~-~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...|+-.... .+|+-.+- .++... +..+++|++|+.|.|||++++++.++|-.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L----~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAIL----SRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHH----HHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 3556544433 47774443 344444 45899999999999999999999999865
No 335
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=77.87 E-value=1.8 Score=46.57 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..+.++--
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35788999999999999988887654
No 336
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=77.86 E-value=1.8 Score=48.75 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
..+.+.|.|++|||||+..++|.-.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999886544
No 337
>PRK13946 shikimate kinase; Provisional
Probab=77.81 E-value=1.9 Score=46.21 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
....|++.|-+|||||+.++.+-+.|
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999987766
No 338
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=77.77 E-value=3.9 Score=48.22 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 290 DGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.+..-.|-|+|.+|||||+.+..+..+|...+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g 84 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQG 84 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 56788999999999999999999999988643
No 339
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.71 E-value=1.7 Score=49.99 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.++-.+
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999999887554
No 340
>PLN02348 phosphoribulokinase
Probab=77.70 E-value=2.9 Score=50.04 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+.--|-|+|-||||||+.++.|.+.|-.
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3445568999999999999999888753
No 341
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=77.68 E-value=8.4 Score=47.16 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=34.9
Q ss_pred hhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 276 iyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
++.+.-++...++.-.+.|.+.|.|.||+|||+..+.++.+.
T Consensus 141 ~l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 141 PMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred ccccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 455667788888777899999999999999999888776653
No 342
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=77.65 E-value=2.4 Score=51.89 Aligned_cols=65 Identities=29% Similarity=0.459 Sum_probs=40.2
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHHccCCC------ccHHHHHHhhhHHHHHhhcCcc-CCCCCCCccccEEE
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGGGS------EGIEYEILQTNHILEAFGNAKT-SRNDNSSRFGKLIE 360 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~------~~ie~~il~snpiLEAFGNAkT-~rN~NSSRFGK~i~ 360 (1221)
..|=+|+|+||||+||-..++.|=++ .....+. ..|...++++ |-||..|- -...+.+|-|+|-.
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~~-S~R~~~PFVavNcaAip~~l~ES----ELFGhekGAFTGA~~~r~G~fE~ 233 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQA-SPRAKGPFIAVNCAAIPENLLES----ELFGHEKGAFTGAITRRIGRFEQ 233 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHhh-CcccCCCceeeecccCCHHHHHH----HhhcccccCcCCcccccCcceeE
Confidence 45678999999999999887766443 2222111 1333333322 45998882 22456788999863
No 343
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.64 E-value=1.8 Score=48.45 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456889999999999999999887543
No 344
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=77.61 E-value=1.6 Score=48.59 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=17.1
Q ss_pred CceEEEEcCCCCCChhHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFA 313 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~i 313 (1221)
+.-.+.|.|+||||||+...++
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3457899999999999865443
No 345
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.53 E-value=1.8 Score=47.88 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+.+.-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999998888544
No 346
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.52 E-value=2.1 Score=41.56 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.3
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 295 SIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.++|.|.+|+|||.++-.++.++...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc
Confidence 37899999999999999999988865
No 347
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.37 E-value=2.9 Score=50.40 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=30.9
Q ss_pred HHHhhhhC-CCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 283 AYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 283 Ay~~m~~~-~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+++++.. +-++++|++|+.|.|||+.++.+-++|-.
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45555554 56789999999999999999999998865
No 348
>PRK01184 hypothetical protein; Provisional
Probab=77.29 E-value=1.7 Score=46.15 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=16.3
Q ss_pred EEEEcCCCCCChhHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFA 313 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~i 313 (1221)
-|+|+|.+|||||+.++++
T Consensus 3 ~i~l~G~~GsGKsT~a~~~ 21 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKIA 21 (184)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999998843
No 349
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.28 E-value=1.9 Score=46.88 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..|.++..+
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999988886443
No 350
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=77.27 E-value=1.9 Score=47.55 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|.+|||||+..++++-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35789999999999999988887643
No 351
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=77.26 E-value=2.1 Score=53.97 Aligned_cols=44 Identities=32% Similarity=0.378 Sum_probs=32.9
Q ss_pred CchhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
|-|.++=.++|.. +.++.-.|+|+|.||||||+.++.+...|-.
T Consensus 375 peV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 5555555555533 3345568999999999999999999888764
No 352
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=77.25 E-value=1.9 Score=48.06 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~ 315 (1221)
...+.+.|.|++|||||+..+.|+-
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~G 69 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999998854
No 353
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.25 E-value=1.9 Score=48.29 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+++.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35688999999999999998887644
No 354
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=77.24 E-value=1.9 Score=46.24 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.....+.|.|+||||||+..+.+.-.+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4567899999999999999998876544
No 355
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=77.18 E-value=4 Score=49.47 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=31.1
Q ss_pred hhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 277 YAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 277 yavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
|...-.|...++.-.+.|.+.|.|.||+|||+..+.++.+
T Consensus 121 ~~tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~ 160 (411)
T TIGR03496 121 LDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARY 160 (411)
T ss_pred eeeeEEeecceEEEecCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3344566666766778899999999999999987776654
No 356
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=77.18 E-value=2.8 Score=52.21 Aligned_cols=38 Identities=29% Similarity=0.468 Sum_probs=27.4
Q ss_pred HHHHHhhhhCCC-ceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 281 DTAYNEMMGDGV-NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 281 ~~Ay~~m~~~~~-nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
......+..... .+-+|++|.+|+|||++.+.+.+-|-
T Consensus 32 ~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 32 RSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred HHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 344455554443 45677899999999999999887763
No 357
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=77.17 E-value=2 Score=46.51 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..++++..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45788999999999999999887643
No 358
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=77.15 E-value=2.7 Score=45.98 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=28.0
Q ss_pred HHHhhhhCC--CceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 283 AYNEMMGDG--VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 283 Ay~~m~~~~--~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
....|+..+ ....++|+|++|+|||..+..++..++..
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~ 46 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ 46 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 344555443 45678999999999999988887776543
No 359
>PRK00625 shikimate kinase; Provisional
Probab=77.14 E-value=2 Score=45.86 Aligned_cols=24 Identities=29% Similarity=0.456 Sum_probs=21.1
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa 318 (1221)
-|+|.|-.|||||+.++.+-+.|-
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 399999999999999999977653
No 360
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=77.14 E-value=1.9 Score=48.88 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..|+|+..+
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999999887654
No 361
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=77.13 E-value=2 Score=46.68 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
....+.|.|++|||||+..+.++..+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46788999999999999988886543
No 362
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=77.05 E-value=1.9 Score=47.63 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..+.+.-.
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999999888643
No 363
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.04 E-value=1.9 Score=48.88 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|.||||||+..+.++..
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999999988764
No 364
>PRK04195 replication factor C large subunit; Provisional
Probab=76.97 E-value=2.4 Score=52.54 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.....++|+|++|+|||+.++.+.+.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 336799999999999999999887765
No 365
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=76.95 E-value=2.1 Score=49.24 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
+..+.++|+|++|+|||+.++.+.+.+
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999887655
No 366
>PRK06921 hypothetical protein; Provisional
Probab=76.92 E-value=3.6 Score=46.92 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
....|++.|.+|+|||+.+..|.+.|...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 46899999999999999999888877653
No 367
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=76.89 E-value=1.9 Score=47.31 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..+++.-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988888643
No 368
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=76.89 E-value=2.1 Score=44.73 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.4
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
-.|++.|.||||||+..|.+..-|-
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELG 37 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhC
Confidence 4799999999999999999987665
No 369
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=76.75 E-value=2 Score=46.95 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..|.+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999988888654
No 370
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=76.73 E-value=2 Score=46.46 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.+|||||+..+.++..+
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 467899999999999999988886543
No 371
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=76.73 E-value=2.1 Score=49.06 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=30.2
Q ss_pred HHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 279 IADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 279 vA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.++.....+...+.-++++|.|.+|||||+..+.+...+.
T Consensus 97 ~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 97 AADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred cHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 3455555555555558999999999999999988876654
No 372
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=76.71 E-value=1.9 Score=48.96 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~ 315 (1221)
...+.+.|.|+||||||+..+.|.-
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVG 60 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568999999999999998887753
No 373
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=76.68 E-value=1.9 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|.|.+|||||+.++.+-+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999887754
No 374
>PRK07429 phosphoribulokinase; Provisional
Probab=76.67 E-value=1.9 Score=50.76 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
+.=-|-|+|.||||||+.++.+...|
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll 32 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLL 32 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHh
Confidence 34467789999999999998886554
No 375
>PRK05439 pantothenate kinase; Provisional
Probab=76.66 E-value=3 Score=48.66 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=25.3
Q ss_pred CCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 290 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.+..--|-|+|.+|||||+.++.+...|...
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4556678899999999999999888776543
No 376
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=76.55 E-value=2.3 Score=46.34 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.-|.|+|..|||||+..+.+++.|..
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 35889999999999999999987763
No 377
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=76.53 E-value=2.1 Score=45.47 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.||||||+..+.++..+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888876543
No 378
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=76.48 E-value=2.9 Score=45.30 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+.+.+.|+|++|||||..+..+....+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~ 38 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR 38 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999888666555443
No 379
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=76.46 E-value=2 Score=47.68 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.+|||||+..+.++-.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999887654
No 380
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.40 E-value=2 Score=46.15 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~ 315 (1221)
...+.+.|.|+||||||+..|.+.-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4568899999999999999888763
No 381
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=76.38 E-value=2.1 Score=46.90 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+.|.--
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999988887543
No 382
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=76.36 E-value=2 Score=47.83 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..|.+.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988888643
No 383
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=76.30 E-value=2 Score=48.70 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.||||||+..++|.-.+
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999988886443
No 384
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=76.27 E-value=2.4 Score=47.47 Aligned_cols=41 Identities=29% Similarity=0.390 Sum_probs=30.7
Q ss_pred HHHHHHHhhhhC-CCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 279 IADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 279 vA~~Ay~~m~~~-~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+.+++|..|... ..+.+-.+.|++|+|||||+|.+-+.|..
T Consensus 17 lt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~ 58 (231)
T PF12774_consen 17 LTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALGR 58 (231)
T ss_dssp HHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCC
Confidence 456777766532 45688899999999999999988776554
No 385
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=76.26 E-value=2.1 Score=45.61 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.+...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888775443
No 386
>PRK07952 DNA replication protein DnaC; Validated
Probab=76.25 E-value=2.5 Score=47.67 Aligned_cols=29 Identities=34% Similarity=0.394 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.+.++++|.+|+|||+.+..|..+|...+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g 127 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRG 127 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999998754
No 387
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=76.25 E-value=2 Score=48.86 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|.||||||+..+.|...+.
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3568899999999999999999987653
No 388
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=76.24 E-value=2.2 Score=45.28 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.+|||||+..|.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 357889999999999999888876543
No 389
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=76.23 E-value=2 Score=48.13 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+++...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988877644
No 390
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=76.19 E-value=1.5 Score=49.60 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=28.7
Q ss_pred HhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 285 ~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
..+..-...+.+.|.|+||||||+..|.++-.+...+
T Consensus 18 ~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~ 54 (255)
T cd03236 18 HRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNL 54 (255)
T ss_pred hcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCC
Confidence 3443235678999999999999999999988876443
No 391
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.19 E-value=2.1 Score=47.13 Aligned_cols=27 Identities=30% Similarity=0.559 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...|.+.|.|++|||||+..+.+.-.+
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 456889999999999999988886443
No 392
>PRK13949 shikimate kinase; Provisional
Probab=76.18 E-value=2.2 Score=45.25 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.2
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa 318 (1221)
.|+|.|..|||||+.++.+-+.|-
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999998877654
No 393
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=76.12 E-value=2.1 Score=47.49 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 457899999999999999988887554
No 394
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=76.09 E-value=2.1 Score=48.02 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..|.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988887543
No 395
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=76.08 E-value=2.1 Score=49.49 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~y 316 (1221)
...++|+|+||+||||++=-+++.
T Consensus 146 g~gvli~G~sg~GKS~lal~Li~r 169 (304)
T TIGR00679 146 GVGVLITGKSGVGKSETALELINR 169 (304)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 578999999999999998877775
No 396
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=76.08 E-value=2.1 Score=46.77 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..|.++-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999999886543
No 397
>PRK12704 phosphodiesterase; Provisional
Probab=76.07 E-value=41 Score=42.19 Aligned_cols=13 Identities=8% Similarity=0.128 Sum_probs=5.1
Q ss_pred CHHHHHHHHHhHH
Q 000929 1168 PDVELRKLKMRFE 1180 (1221)
Q Consensus 1168 ~~~el~~lk~~f~ 1180 (1221)
.++=..+.+.-|+
T Consensus 284 iee~~~~~~~~~~ 296 (520)
T PRK12704 284 IEEMVEKARKEVD 296 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444343
No 398
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=76.07 E-value=3.2 Score=45.05 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=31.2
Q ss_pred HHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 282 ~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.|++.++. ..++.++|.|..|+|||++.+.+.+++...+
T Consensus 8 ~a~~~~l~-~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g 46 (196)
T PF13604_consen 8 EAVRAILT-SGDRVSVLQGPAGTGKTTLLKALAEALEAAG 46 (196)
T ss_dssp HHHHHHHH-CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHh-cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 45555554 4578899999999999999999999888743
No 399
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=75.99 E-value=2.1 Score=47.95 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456889999999999999888876543
No 400
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=75.98 E-value=1.5 Score=55.46 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
+..+.+.|.|+||||||+..++++.++
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567999999999999999999999886
No 401
>PRK00279 adk adenylate kinase; Reviewed
Probab=75.96 E-value=2.2 Score=46.82 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa 318 (1221)
-|+|.|.+|||||+.++.+-+.+-
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999877654
No 402
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=75.88 E-value=2.2 Score=47.90 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 356899999999999999998886543
No 403
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=75.85 E-value=2.2 Score=47.47 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..|.++-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999988886543
No 404
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=75.81 E-value=2.1 Score=48.28 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457889999999999999999886543
No 405
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=75.80 E-value=2.2 Score=47.71 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999988886543
No 406
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.72 E-value=2.2 Score=47.50 Aligned_cols=25 Identities=32% Similarity=0.512 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~ 315 (1221)
...+.+.|.|+||||||+..+.+.-
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4568899999999999998887753
No 407
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=75.71 E-value=2.2 Score=47.93 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..|.+...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356899999999999999998886543
No 408
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=75.69 E-value=2.3 Score=45.84 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..+.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998887543
No 409
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=75.68 E-value=2.1 Score=46.78 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|.|.+|||||+.++.+-+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999987654
No 410
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=75.66 E-value=2.2 Score=48.02 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999988886543
No 411
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=75.61 E-value=2.4 Score=44.83 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.+...+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 456889999999999999888886544
No 412
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=75.57 E-value=1.5 Score=55.37 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.|.|.|+||||||+..|.++..+..
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p 387 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDP 387 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 46789999999999999999999877653
No 413
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=75.55 E-value=2.5 Score=44.71 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
+.-.||+|++|+|||+....|+-.|.
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 46789999999999999977755443
No 414
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.52 E-value=2.1 Score=46.49 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 467899999999999999888876554
No 415
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=75.50 E-value=1.8 Score=48.93 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=29.6
Q ss_pred HHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 282 ~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
+|...|.--++.|-++|.|++|+|||+.++.+.+.+.
T Consensus 5 ~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred hheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4445556667899999999999999998888776654
No 416
>PLN02200 adenylate kinase family protein
Probab=75.49 E-value=2.2 Score=47.69 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
..--|+|.|.+|||||+.++.+.+.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999987765
No 417
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.49 E-value=3.8 Score=51.99 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=33.6
Q ss_pred CCchhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 273 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
..|+...-..++. ..+..+++||+|++|.|||+.++.+.++|-+.
T Consensus 21 q~~~~~~L~~~i~---~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 21 QEHVVQTLRNAIA---EGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred CHHHHHHHHHHHH---hCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3665544333332 34568999999999999999999999998754
No 418
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=75.47 E-value=8.5 Score=44.44 Aligned_cols=66 Identities=26% Similarity=0.322 Sum_probs=51.4
Q ss_pred hHHHHHHHhhh-hCCCceEEEEcCCCCCChhHHHHHHHHHHHHccC---------------C------------------
Q 000929 278 AIADTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAALGG---------------G------------------ 323 (1221)
Q Consensus 278 avA~~Ay~~m~-~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~---------------~------------------ 323 (1221)
++|....+.+. .+++.+-|=|+|..|||||+..-.+...|..-+. +
T Consensus 35 ~~a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~v 114 (323)
T COG1703 35 ALARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGV 114 (323)
T ss_pred hHHHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCe
Confidence 45666666554 5678889999999999999999999888886421 0
Q ss_pred ----------CccHHHHHHhhhHHHHHhhc
Q 000929 324 ----------SEGIEYEILQTNHILEAFGN 343 (1221)
Q Consensus 324 ----------~~~ie~~il~snpiLEAFGN 343 (1221)
.+++......+--+|||+|-
T Consensus 115 FiRs~~srG~lGGlS~at~~~i~~ldAaG~ 144 (323)
T COG1703 115 FIRSSPSRGTLGGLSRATREAIKLLDAAGY 144 (323)
T ss_pred EEeecCCCccchhhhHHHHHHHHHHHhcCC
Confidence 13678888889999999995
No 419
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=75.45 E-value=2.3 Score=46.74 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.++..+
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999988886543
No 420
>PRK09183 transposase/IS protein; Provisional
Probab=75.44 E-value=2.7 Score=47.80 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+.|+|.|++|+|||+.+..+...++.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3567999999999999999988666554
No 421
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=75.41 E-value=3.3 Score=49.43 Aligned_cols=40 Identities=33% Similarity=0.432 Sum_probs=33.0
Q ss_pred HHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccC
Q 000929 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 283 Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
++...++...+-.|+|.|.+|+|||.++|++++-|-..+.
T Consensus 32 ~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~ 71 (366)
T COG1474 32 FLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA 71 (366)
T ss_pred HHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc
Confidence 3666666666667999999999999999999999887543
No 422
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=75.37 E-value=1.9 Score=46.87 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCCChhHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAM 314 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il 314 (1221)
...++|+|++|||||+..|.+.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3788999999999999999984
No 423
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=75.32 E-value=1.8 Score=54.45 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
++.+.|.|.|+||||||+..|.++..+.
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 5789999999999999999999988654
No 424
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=75.26 E-value=1.7 Score=55.04 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
+..|.|.|.|+||||||+..|.++..+.
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4679999999999999999999877654
No 425
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=75.24 E-value=2.8 Score=48.12 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=24.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.|.|+|.||||||+.+..++..|...+
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 588999999999999999999999765
No 426
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=75.22 E-value=2.4 Score=46.47 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.+|||||+..+++.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 457889999999999999988886543
No 427
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=75.18 E-value=25 Score=38.23 Aligned_cols=68 Identities=22% Similarity=0.358 Sum_probs=42.9
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000929 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASL 1060 (1221)
Q Consensus 993 ~e~e~~~l~~~l~eLq~r~~e~e~~l~~~eeEn~~L~eqL~~~e~~~~e~E~k~k~~ee~~~k~~eeL 1060 (1221)
....+..+...+..|+.++...+..+.++...++.|..++..+.-+...+|.++..++++-..+++-|
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666666666666666666666666666666666666666666655555554
No 428
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.17 E-value=2.4 Score=44.62 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999888775543
No 429
>PRK14532 adenylate kinase; Provisional
Probab=75.15 E-value=2.2 Score=45.57 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
.|+|.|.+|||||+.++.+-+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999987665
No 430
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=75.15 E-value=1.8 Score=54.38 Aligned_cols=29 Identities=17% Similarity=0.444 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+..+.|.|.|+||||||+..+.++..+-.
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~ 384 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYEP 384 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 46799999999999999999999877653
No 431
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=75.11 E-value=2.3 Score=45.99 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..++++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988876543
No 432
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=75.05 E-value=3 Score=47.32 Aligned_cols=28 Identities=25% Similarity=0.172 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+...++|+|++|+|||..+-.++...+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~ 62 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS 62 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5688999999999999877766555443
No 433
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=75.02 E-value=2.3 Score=47.53 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+.|.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35688999999999999999888653
No 434
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=75.00 E-value=3.2 Score=53.75 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=31.5
Q ss_pred HHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 282 ~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+...+...+++|.|++|+|||+.++.+-+++.
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 5667777777888999999999999999999987653
No 435
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=74.99 E-value=72 Score=44.28 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=17.6
Q ss_pred HHHHHHhHHHHhHhhhhhhhchhhhhhhhhhHH
Q 000929 888 RLQKCFRGYQARSRFRELCNGVITLQSFARGEN 920 (1221)
Q Consensus 888 ~IQa~~Rg~laRk~y~~lr~aai~IQs~~Rg~~ 920 (1221)
.|..+++-...-..+..++..+..|+..++...
T Consensus 227 ~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~l~ 259 (1201)
T PF12128_consen 227 DIDDWLRDIRASQGFEKVRPEFDKLQQQYRQLQ 259 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554444455555555666665554443
No 436
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=74.98 E-value=2.3 Score=48.38 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999888776543
No 437
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=74.97 E-value=2.3 Score=48.91 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+++.-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999999987543
No 438
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=74.96 E-value=4.8 Score=42.32 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=27.0
Q ss_pred hhCCCceEEEEcCCCCCChhHHHHHHHHHHHHccC
Q 000929 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 288 ~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
..++-+|++|+.|.+|+||++.+..+.+.|..-..
T Consensus 14 ~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 14 KSGRLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp HCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred HcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 34567999999999999999999999998876543
No 439
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=74.94 E-value=2.4 Score=44.40 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|.||||||+..+.++-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999888644
No 440
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=74.93 E-value=3.2 Score=44.82 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=23.9
Q ss_pred HHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 282 ~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.|...++.... ..+|.|..|+|||++...++.++
T Consensus 8 ~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 8 EAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 34444443322 68999999999999999998888
No 441
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=74.92 E-value=2.4 Score=45.74 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888876443
No 442
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=74.92 E-value=2.3 Score=47.02 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..+.++-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999988877543
No 443
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=74.92 E-value=3.5 Score=51.99 Aligned_cols=45 Identities=24% Similarity=0.393 Sum_probs=35.0
Q ss_pred CCchhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 273 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.+|+...=..++. ..+..++++++|+.|.|||++++.+.+.|.+.
T Consensus 21 q~~v~~~L~~~i~---~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 21 QEHITKTLKNAIK---QGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5777654444443 24568999999999999999999999988754
No 444
>PRK13975 thymidylate kinase; Provisional
Probab=74.91 E-value=2.4 Score=45.31 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yL 317 (1221)
.-|+|.|..|||||+.++.+-+.|
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999887766
No 445
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=74.87 E-value=9.2 Score=46.62 Aligned_cols=41 Identities=20% Similarity=0.175 Sum_probs=32.7
Q ss_pred hhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 277 YAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 277 yavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
|.+.-.+...++.-.+.|.+.|.|.||+|||+..+.+....
T Consensus 129 l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 129 LPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred cCCCceeehhhccccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 44455667777777889999999999999999988776543
No 446
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=74.85 E-value=1.8 Score=56.08 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..|.|.|.|+||||||+..|+++..+.
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 468999999999999999999987654
No 447
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=74.81 E-value=4.1 Score=51.49 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=37.7
Q ss_pred HHHhccCCC----CCchhhHHHHHHHhhh-hCCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 264 TAYRQKVMD----SPHVYAIADTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~-~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
+.||-.... .+|+- ..+.++. ..+..++++++|+.|.|||+.++.+.+.|.+.
T Consensus 8 ~KyRP~~F~dIIGQe~iv----~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIK----KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHhCCCCHHHhcCcHHHH----HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 455544332 46654 3344444 44668999999999999999999999998754
No 448
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=74.80 E-value=2.4 Score=46.50 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..+.++-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999998887653
No 449
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=74.79 E-value=2.4 Score=47.39 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+.+.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35688999999999999988887543
No 450
>PRK08181 transposase; Validated
Probab=74.79 E-value=2.7 Score=48.01 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=25.8
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
+.+.|+|.|.+|+|||..+..+...++..+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g 134 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENG 134 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcC
Confidence 456799999999999999999988887654
No 451
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=74.76 E-value=3.2 Score=43.03 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=22.4
Q ss_pred HhhhhCCCceEEEEcCCCCCChhHHHHHHH
Q 000929 285 NEMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1221)
Q Consensus 285 ~~m~~~~~nQsIiisGESGAGKTet~K~il 314 (1221)
+.+....+.-.|+|.|.+|||||+..+.+.
T Consensus 6 ~~~~~~~~~~~v~i~G~~g~GKStLl~~l~ 35 (173)
T cd04155 6 RKLRKSSEEPRILILGLDNAGKTTILKQLA 35 (173)
T ss_pred HHhhccCCccEEEEEccCCCCHHHHHHHHh
Confidence 344444556679999999999998877663
No 452
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=74.74 E-value=3.7 Score=52.43 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=38.4
Q ss_pred HHHhccCCC----CCchhhHHHHHHHhhhh-CCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 264 TAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~-~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.+|+-+... .+|+.. ++..++. .+-.+++|++|+.|.|||++++++.+.|-+.
T Consensus 8 ~KyRP~~f~divGQe~vv~----~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLT----ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred HHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 455544432 477764 4444443 4567899999999999999999999988763
No 453
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=74.73 E-value=4.3 Score=48.96 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=24.4
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
..++|+|.+|+|||+.++.+.+++...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 469999999999999999999998764
No 454
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=74.66 E-value=2.3 Score=48.40 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..|.+.-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35688999999999999988877543
No 455
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=74.66 E-value=2.1 Score=44.74 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 000929 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
-++|+|.+|||||+..+.+++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc
Confidence 37899999999999999877653
No 456
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=74.64 E-value=2.4 Score=48.01 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 357899999999999999998885443
No 457
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=74.61 E-value=2.4 Score=47.48 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~ 315 (1221)
...+.+.|.|.||||||+..+.|.-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999998888854
No 458
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=74.60 E-value=2.4 Score=47.73 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999886544
No 459
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=74.58 E-value=2.2 Score=48.28 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+.++-.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45688999999999999999888654
No 460
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=74.57 E-value=2.5 Score=45.27 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=20.3
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|.|-.|||||+.++.+-+++
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998874
No 461
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=74.54 E-value=2.4 Score=49.12 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.+|||||+..++++-.+
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999886543
No 462
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=74.52 E-value=2.4 Score=47.07 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.++-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 457899999999999999999887554
No 463
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=74.52 E-value=27 Score=44.66 Aligned_cols=48 Identities=27% Similarity=0.276 Sum_probs=33.4
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000929 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWL 1040 (1221)
Q Consensus 993 ~e~e~~~l~~~l~eLq~r~~e~e~~l~~~eeEn~~L~eqL~~~e~~~~ 1040 (1221)
++.+++.....++.||.+.+++.+.++...+||..+.+.+++.+.++.
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~ 486 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELL 486 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777777777777788777777666655543
No 464
>CHL00181 cbbX CbbX; Provisional
Probab=74.43 E-value=2.8 Score=48.41 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=24.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.|++.|++|+|||+.++.+.+++...+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 489999999999999999999887654
No 465
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=74.41 E-value=2.5 Score=46.28 Aligned_cols=26 Identities=23% Similarity=0.528 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+.+...
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35688999999999999988888643
No 466
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=74.39 E-value=2.5 Score=47.01 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..|++.-.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888886544
No 467
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=74.37 E-value=2.5 Score=46.45 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.+|||||+..+++.-.+
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 467899999999999999988886543
No 468
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=74.34 E-value=5.1 Score=48.97 Aligned_cols=30 Identities=33% Similarity=0.413 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
..+..|++.|..|+|||+++..+..||...
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 346789999999999999999999888864
No 469
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=74.33 E-value=3.6 Score=49.85 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yL 317 (1221)
-.|+|.|++|+|||+.++.+-+.|
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc
Confidence 589999999999999999886544
No 470
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=74.32 E-value=2.4 Score=46.28 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yL 317 (1221)
--|+|+|-||||||+.++.+...+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999998887764
No 471
>PRK06851 hypothetical protein; Provisional
Probab=74.29 E-value=3.6 Score=49.08 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=27.3
Q ss_pred CCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 290 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
...++.+||+|-+|+|||+.++.+++.+...
T Consensus 27 ~~~~~~~il~G~pGtGKStl~~~i~~~~~~~ 57 (367)
T PRK06851 27 DGANRIFILKGGPGTGKSTLMKKIGEEFLEK 57 (367)
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4568999999999999999999999888754
No 472
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=74.29 E-value=2.5 Score=47.60 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.++..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356788999999999999988886543
No 473
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=74.29 E-value=2.5 Score=46.57 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
..+.+.|.|++|||||+..+.+...+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999887544
No 474
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.28 E-value=37 Score=35.21 Aligned_cols=63 Identities=27% Similarity=0.290 Sum_probs=28.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000929 997 VQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMAS 1059 (1221)
Q Consensus 997 ~~~l~~~l~eLq~r~~e~e~~l~~~eeEn~~L~eqL~~~e~~~~e~E~k~k~~ee~~~k~~ee 1059 (1221)
+..+...++.++..+..++..+.+++.++..++.....++......+..++...++++++...
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~ 123 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ 123 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444444444433
No 475
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=74.27 E-value=3 Score=48.78 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=27.5
Q ss_pred HHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 281 ~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
+.||-.+.- ....+|+|+|+.|||||+..+.+|.++-
T Consensus 132 ~~ayL~~~i-e~~~siii~G~t~sGKTt~lnall~~Ip 168 (312)
T COG0630 132 QAAYLWLAI-EARKSIIICGGTASGKTTLLNALLDFIP 168 (312)
T ss_pred HHHHHHHHH-HcCCcEEEECCCCCCHHHHHHHHHHhCC
Confidence 445533322 2357899999999999999999988765
No 476
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=74.23 E-value=4.1 Score=47.92 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=31.8
Q ss_pred HHHHhhh--hCCCceEEEEcCCCCCChhHHHHHHHHHHHHc
Q 000929 282 TAYNEMM--GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 282 ~Ay~~m~--~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.+|+.+. .++-+++++++|.+|.|||+.++.+-+.|.+.
T Consensus 8 ~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 8 EQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred HHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 3455554 45789999999999999999999998887754
No 477
>PRK00106 hypothetical protein; Provisional
Probab=74.23 E-value=32 Score=43.17 Aligned_cols=46 Identities=24% Similarity=0.410 Sum_probs=29.4
Q ss_pred cchHhHHHHHHHHhhcccccccceeeeccCCCCCCCCCCHH--HHHHHHHhHHH
Q 000929 1130 LTAVNHLTKEFEQRRQNFDDDAKALIEIKTTQPASTVHPDV--ELRKLKMRFET 1181 (1221)
Q Consensus 1130 ~~~v~~l~~e~~~~~q~f~~~a~~~~ev~~~~~~~~~~~~~--el~~lk~~f~~ 1181 (1221)
..+|..--+||++.-.--+++| +.|+..+. +||+- =|=+||-|..-
T Consensus 300 Ee~v~k~~~e~~~~i~~~Ge~a--~~~lg~~~----~~~e~~~~lg~l~~r~sy 347 (535)
T PRK00106 300 EELVEKNRLEMDNRIREYGEAA--AYEIGAPN----LHPDLIKIMGRLQFRTSY 347 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHcCCCC----CCHHHHHHHHHHhhhccC
Confidence 3567777788888777666665 45666654 45543 55667766654
No 478
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=74.20 E-value=2.4 Score=47.72 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..|.+.-.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45688999999999999998887644
No 479
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=74.19 E-value=3 Score=49.89 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
+...|++.|.+|+|||+++..+..+++
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999998887665
No 480
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.18 E-value=3.7 Score=52.12 Aligned_cols=53 Identities=19% Similarity=0.343 Sum_probs=37.6
Q ss_pred HHHhccCCC----CCchhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHHHH
Q 000929 264 TAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
++|+-+..+ ..|+-..-.+++ ...+..+++||+|..|.|||++++++.+.|-+
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al---~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHAL---EQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHH---HhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455544332 467665333333 24456789999999999999999999999976
No 481
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=74.15 E-value=4.2 Score=49.21 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yL 317 (1221)
+..|++.|.+|+|||+.++.+-+.|
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999999999886654
No 482
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=74.13 E-value=2.6 Score=43.35 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|++|||||+..+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35688899999999999988887544
No 483
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=74.03 E-value=2.6 Score=47.87 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|.||||||+..+.+...
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999988887654
No 484
>PRK06936 type III secretion system ATPase; Provisional
Probab=74.03 E-value=5.5 Score=48.59 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=34.1
Q ss_pred chhhHHHHHHHhhhhCCCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 275 HVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 275 HiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.++.+.-++...+..-.+.|.+.|.|.||+|||+..+.+..+.
T Consensus 144 ~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 144 TPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred CCCcCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 3445556677777777889999999999999999988876654
No 485
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=73.97 E-value=4.6 Score=42.73 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=25.5
Q ss_pred HHHHHhhhhCCCceEEEEcCCCCCChhHHHHHH
Q 000929 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFA 313 (1221)
Q Consensus 281 ~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~i 313 (1221)
..++..|-...+.--|+|.|.+|||||+..+.+
T Consensus 7 ~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l 39 (190)
T cd00879 7 YNVLSSLGLYNKEAKILFLGLDNAGKTTLLHML 39 (190)
T ss_pred HHHHHHhhcccCCCEEEEECCCCCCHHHHHHHH
Confidence 445666655666778999999999999987755
No 486
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=73.94 E-value=2.7 Score=47.38 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457889999999999999998887544
No 487
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=73.93 E-value=2.5 Score=48.87 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.+|||||+..|+++-.+
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456888999999999999999887544
No 488
>PRK10865 protein disaggregation chaperone; Provisional
Probab=73.91 E-value=3.4 Score=54.79 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.9
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 000929 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
.++++.|++|+|||++++.+-+++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999988875
No 489
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=73.91 E-value=2.9 Score=52.36 Aligned_cols=50 Identities=32% Similarity=0.453 Sum_probs=33.3
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHHHHccCCCc---cH--HHHHHh---hhHHHHHhhc
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGGGSE---GI--EYEILQ---TNHILEAFGN 343 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~~---~i--e~~il~---snpiLEAFGN 343 (1221)
..||.+||-||+|||||+ .|=|||+.-|-... ++ -.+|-. |.-|=|..|+
T Consensus 64 e~nqvlIviGeTGsGKST---QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~ 121 (674)
T KOG0922|consen 64 EDNQVLIVIGETGSGKST---QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGC 121 (674)
T ss_pred HHCCEEEEEcCCCCCccc---cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCC
Confidence 468999999999999996 57899987653221 11 122322 4566677766
No 490
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=73.89 E-value=2.7 Score=45.64 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.+...+
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457899999999999999999887654
No 491
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=73.88 E-value=2.5 Score=47.74 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|.+|||||+..+.|...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988888654
No 492
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=73.84 E-value=3.3 Score=42.97 Aligned_cols=26 Identities=38% Similarity=0.459 Sum_probs=23.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
|.++|.+|||||+.++.+..++...+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g 27 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARG 27 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 78899999999999999998887654
No 493
>PRK06835 DNA replication protein DnaC; Validated
Probab=73.79 E-value=4.5 Score=47.64 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCCChhHHHHHHHHHHHHcc
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
....++|.|.+|+|||+.+..|.+.|..-+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 348899999999999999999999887643
No 494
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=73.78 E-value=2.6 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCCChhHHHHHHHH
Q 000929 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~ 315 (1221)
..+.+.|.|+||||||+..+.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 468899999999999999888754
No 495
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=73.78 E-value=50 Score=38.39 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=26.9
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000929 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDA 1037 (1221)
Q Consensus 993 ~e~e~~~l~~~l~eLq~r~~e~e~~l~~~eeEn~~L~eqL~~~e~ 1037 (1221)
++.-+..+.++...+|.++.++..+..++++|...|..++.+..+
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~la 176 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALA 176 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 444455556666666666666666666666666666655555433
No 496
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=73.76 E-value=2.5 Score=49.46 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..++++..+
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999886554
No 497
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=73.71 E-value=2.5 Score=50.11 Aligned_cols=25 Identities=32% Similarity=0.270 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~ 315 (1221)
...+.+.|.|+||||||+..+.|.-
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaG 46 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISG 46 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999998888753
No 498
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=73.70 E-value=2.6 Score=48.02 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+.++-.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888654
No 499
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=73.69 E-value=2.6 Score=47.93 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhHHHHHHHHH
Q 000929 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|.+|||||+..+.|.-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988877643
No 500
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.69 E-value=2.3 Score=46.19 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=0.0
Q ss_pred EEEcCCCCCChhHHHHHHH
Q 000929 296 IIISGESGAGKTETAKFAM 314 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il 314 (1221)
+.|.|+||||||+..+.+.
T Consensus 28 ~~i~G~nGsGKSTLl~~l~ 46 (211)
T cd03264 28 YGLLGPNGAGKTTLMRILA 46 (211)
T ss_pred EEEECCCCCCHHHHHHHHh
Done!