Query 000932
Match_columns 1221
No_of_seqs 432 out of 2290
Neff 6.3
Searched_HMMs 46136
Date Tue Apr 2 00:49:04 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1E-205 3E-210 1881.6 0.0 770 157-940 8-803 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 6E-199 1E-203 1835.5 0.0 751 161-924 43-818 (821)
3 cd01383 MYSc_type_VIII Myosin 100.0 1E-187 2E-192 1716.3 0.0 677 202-879 1-677 (677)
4 KOG0161 Myosin class II heavy 100.0 3E-183 6E-188 1759.5 0.0 769 151-925 25-818 (1930)
5 cd01381 MYSc_type_VII Myosin m 100.0 2E-182 4E-187 1670.6 0.0 660 210-879 1-671 (671)
6 cd01377 MYSc_type_II Myosin mo 100.0 5E-182 1E-186 1673.7 0.0 672 205-879 1-693 (693)
7 cd01380 MYSc_type_V Myosin mot 100.0 6E-182 1E-186 1673.0 0.0 669 210-879 1-691 (691)
8 cd01384 MYSc_type_XI Myosin mo 100.0 4E-181 1E-185 1656.6 0.0 659 209-882 1-673 (674)
9 cd01378 MYSc_type_I Myosin mot 100.0 1E-180 2E-185 1658.0 0.0 657 210-879 1-674 (674)
10 cd01387 MYSc_type_XV Myosin mo 100.0 3E-180 7E-185 1651.7 0.0 668 209-879 1-677 (677)
11 cd01385 MYSc_type_IX Myosin mo 100.0 4E-179 8E-184 1645.9 0.0 669 208-880 6-689 (692)
12 cd01382 MYSc_type_VI Myosin mo 100.0 1E-178 3E-183 1646.1 0.0 664 208-879 3-716 (717)
13 smart00242 MYSc Myosin. Large 100.0 5E-176 1E-180 1623.1 0.0 665 204-880 1-677 (677)
14 KOG0164 Myosin class I heavy c 100.0 7E-176 2E-180 1505.7 0.0 719 209-964 8-754 (1001)
15 cd01379 MYSc_type_III Myosin m 100.0 6E-175 1E-179 1597.4 0.0 635 210-879 1-653 (653)
16 cd00124 MYSc Myosin motor doma 100.0 4E-174 9E-179 1610.3 0.0 669 210-879 1-679 (679)
17 cd01386 MYSc_type_XVIII Myosin 100.0 6E-173 1E-177 1598.4 0.0 666 211-879 2-767 (767)
18 KOG0162 Myosin class I heavy c 100.0 7E-171 2E-175 1462.5 0.0 706 207-930 16-740 (1106)
19 KOG0163 Myosin class VI heavy 100.0 1E-170 2E-175 1461.0 0.0 776 158-964 4-833 (1259)
20 KOG0160 Myosin class V heavy c 100.0 3E-169 7E-174 1534.0 0.0 740 203-961 3-758 (862)
21 PF00063 Myosin_head: Myosin h 100.0 1E-168 3E-173 1575.1 0.0 658 211-868 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 1E-111 3E-116 1052.6 0.0 719 204-924 56-820 (1062)
23 cd01363 Motor_domain Myosin an 97.9 1.8E-08 4E-13 107.8 0.0 90 276-370 8-98 (186)
24 PF02736 Myosin_N: Myosin N-te 96.9 8.7E-06 1.9E-10 66.0 0.0 42 158-199 1-42 (42)
25 KOG4229 Myosin VII, myosin IXB 96.5 3.8E-05 8.3E-10 99.3 0.0 203 755-964 794-1009(1062)
26 KOG0160 Myosin class V heavy c 96.1 0.00015 3.3E-09 91.8 0.0 67 897-964 664-738 (862)
27 KOG0161 Myosin class II heavy 95.8 0.00037 8.1E-09 94.8 0.0 382 376-829 219-627 (1930)
28 KOG0520 Uncharacterized conser 95.2 0.0012 2.7E-08 83.9 0.0 45 884-928 811-855 (975)
29 PF00612 IQ: IQ calmodulin-bin 95.1 0.0016 3.4E-08 44.9 0.0 19 945-963 2-20 (21)
30 PF00612 IQ: IQ calmodulin-bin 94.8 0.0022 4.8E-08 44.2 0.0 19 885-903 3-21 (21)
31 KOG0925 mRNA splicing factor A 94.0 0.0066 1.4E-07 71.7 0.0 57 248-310 23-79 (699)
32 PF13207 AAA_17: AAA domain; P 92.4 0.024 5.2E-07 55.7 0.0 23 295-317 1-23 (121)
33 KOG2128 Ras GTPase-activating 91.8 0.033 7.2E-07 73.1 0.0 72 885-964 567-642 (1401)
34 smart00015 IQ Short calmodulin 91.8 0.034 7.4E-07 40.4 0.0 16 947-962 6-21 (26)
35 smart00015 IQ Short calmodulin 91.7 0.035 7.6E-07 40.3 0.0 21 905-925 2-22 (26)
36 PTZ00014 myosin-A; Provisional 91.2 0.046 9.9E-07 70.9 0.0 43 906-963 777-819 (821)
37 PF01583 APS_kinase: Adenylyls 91.0 0.05 1.1E-06 56.9 0.0 74 294-373 3-80 (156)
38 PF13238 AAA_18: AAA domain; P 90.7 0.057 1.2E-06 53.1 0.0 22 296-317 1-22 (129)
39 PF13401 AAA_22: AAA domain; P 90.6 0.061 1.3E-06 53.4 0.0 29 291-319 2-30 (131)
40 PF13191 AAA_16: AAA ATPase do 90.5 0.063 1.4E-06 56.4 0.0 34 287-320 18-51 (185)
41 TIGR02322 phosphon_PhnN phosph 89.9 0.078 1.7E-06 56.1 0.0 25 294-318 2-26 (179)
42 TIGR03015 pepcterm_ATPase puta 89.0 0.11 2.3E-06 58.6 0.0 26 293-318 43-68 (269)
43 PF00004 AAA: ATPase family as 88.8 0.12 2.5E-06 51.1 0.0 23 296-318 1-23 (132)
44 cd02019 NK Nucleoside/nucleoti 88.7 0.12 2.6E-06 46.4 0.0 22 296-317 2-23 (69)
45 cd00009 AAA The AAA+ (ATPases 88.6 0.12 2.7E-06 50.9 0.0 27 292-318 18-44 (151)
46 PRK05480 uridine/cytidine kina 88.3 0.13 2.9E-06 55.9 0.0 26 292-317 5-30 (209)
47 smart00382 AAA ATPases associa 88.3 0.13 2.9E-06 50.0 0.0 28 293-320 2-29 (148)
48 cd01131 PilT Pilus retraction 88.2 0.14 2.9E-06 55.7 0.0 25 295-319 3-27 (198)
49 PF00485 PRK: Phosphoribulokin 88.1 0.14 3.1E-06 55.2 0.0 26 296-321 2-27 (194)
50 PRK00300 gmk guanylate kinase; 87.9 0.15 3.2E-06 55.2 0.0 26 292-317 4-29 (205)
51 COG0444 DppD ABC-type dipeptid 87.8 0.15 3.3E-06 58.7 0.0 28 291-318 29-56 (316)
52 PRK08233 hypothetical protein; 87.8 0.15 3.3E-06 53.7 0.0 25 294-318 4-28 (182)
53 KOG0520 Uncharacterized conser 87.5 0.17 3.6E-06 65.4 0.0 61 885-964 793-853 (975)
54 cd02023 UMPK Uridine monophosp 87.5 0.17 3.6E-06 54.6 0.0 22 296-317 2-23 (198)
55 TIGR02173 cyt_kin_arch cytidyl 87.2 0.18 3.9E-06 52.5 0.0 23 295-317 2-24 (171)
56 COG0194 Gmk Guanylate kinase [ 87.2 0.18 3.9E-06 54.0 0.0 24 294-317 5-28 (191)
57 cd01918 HprK_C HprK/P, the bif 87.1 0.18 4E-06 52.4 0.0 25 292-316 13-37 (149)
58 cd00820 PEPCK_HprK Phosphoenol 87.0 0.19 4.1E-06 49.4 0.0 23 292-314 14-36 (107)
59 PRK13833 conjugal transfer pro 86.6 0.21 4.5E-06 58.4 0.0 34 284-319 137-170 (323)
60 PRK05541 adenylylsulfate kinas 86.5 0.21 4.6E-06 52.8 0.0 29 291-319 5-33 (176)
61 cd02020 CMPK Cytidine monophos 86.4 0.21 4.6E-06 50.5 0.0 22 296-317 2-23 (147)
62 PRK06762 hypothetical protein; 86.4 0.21 4.7E-06 52.1 0.0 24 294-317 3-26 (166)
63 TIGR00235 udk uridine kinase. 86.4 0.22 4.7E-06 54.3 0.0 28 291-318 4-31 (207)
64 TIGR00150 HI0065_YjeE ATPase, 86.3 0.22 4.8E-06 50.8 0.0 27 292-318 21-47 (133)
65 PRK07261 topology modulation p 86.2 0.23 4.9E-06 52.7 0.0 23 295-317 2-24 (171)
66 cd01129 PulE-GspE PulE/GspE Th 86.1 0.23 5E-06 56.5 0.0 26 294-319 81-106 (264)
67 PTZ00301 uridine kinase; Provi 86.0 0.24 5.1E-06 54.5 0.0 23 296-318 6-28 (210)
68 cd02025 PanK Pantothenate kina 85.9 0.24 5.2E-06 54.8 0.0 24 296-319 2-25 (220)
69 cd01130 VirB11-like_ATPase Typ 85.9 0.24 5.3E-06 53.1 0.0 26 293-318 25-50 (186)
70 TIGR01313 therm_gnt_kin carboh 85.9 0.24 5.3E-06 51.5 0.0 23 296-318 1-23 (163)
71 cd02028 UMPK_like Uridine mono 85.7 0.25 5.5E-06 52.8 0.0 24 296-319 2-25 (179)
72 PRK06696 uridine kinase; Valid 85.6 0.26 5.5E-06 54.5 0.0 30 290-319 19-48 (223)
73 PRK10078 ribose 1,5-bisphospho 85.6 0.26 5.6E-06 52.8 0.0 24 294-317 3-26 (186)
74 PRK00131 aroK shikimate kinase 85.6 0.26 5.6E-06 51.4 0.0 26 292-317 3-28 (175)
75 PRK08118 topology modulation p 85.3 0.27 5.9E-06 51.9 0.0 25 294-318 2-26 (167)
76 cd00227 CPT Chloramphenicol (C 85.2 0.28 6E-06 52.0 0.0 25 293-317 2-26 (175)
77 PRK14737 gmk guanylate kinase; 85.0 0.29 6.3E-06 52.8 0.0 25 293-317 4-28 (186)
78 cd00071 GMPK Guanosine monopho 85.0 0.29 6.3E-06 50.0 0.0 23 296-318 2-24 (137)
79 PF12846 AAA_10: AAA-like doma 85.0 0.29 6.3E-06 55.4 0.0 29 293-321 1-29 (304)
80 TIGR01420 pilT_fam pilus retra 85.0 0.29 6.3E-06 57.8 0.0 27 293-319 122-148 (343)
81 PF00437 T2SE: Type II/IV secr 85.0 0.29 6.4E-06 55.4 0.0 29 292-320 126-154 (270)
82 PF03668 ATP_bind_2: P-loop AT 84.8 0.3 6.6E-06 55.7 0.0 25 294-318 2-28 (284)
83 PF05729 NACHT: NACHT domain 84.7 0.31 6.7E-06 50.0 0.0 27 295-321 2-28 (166)
84 TIGR03263 guanyl_kin guanylate 84.7 0.31 6.7E-06 51.5 0.0 25 294-318 2-26 (180)
85 PF07724 AAA_2: AAA domain (Cd 84.6 0.31 6.8E-06 51.8 0.0 24 295-318 5-28 (171)
86 COG1660 Predicted P-loop-conta 84.6 0.32 6.8E-06 54.5 0.0 24 295-318 3-28 (286)
87 cd02024 NRK1 Nicotinamide ribo 84.4 0.33 7.1E-06 52.5 0.0 22 296-317 2-23 (187)
88 PF13671 AAA_33: AAA domain; P 84.3 0.34 7.3E-06 48.9 0.0 23 296-318 2-24 (143)
89 TIGR02782 TrbB_P P-type conjug 84.2 0.34 7.4E-06 56.1 0.0 27 293-319 132-158 (299)
90 PF00910 RNA_helicase: RNA hel 84.0 0.35 7.6E-06 47.2 0.0 25 296-320 1-25 (107)
91 PRK06217 hypothetical protein; 84.0 0.35 7.6E-06 51.6 0.0 22 296-317 4-25 (183)
92 TIGR02524 dot_icm_DotB Dot/Icm 83.9 0.36 7.7E-06 57.4 0.0 28 292-319 133-160 (358)
93 PRK14738 gmk guanylate kinase; 83.9 0.36 7.8E-06 52.8 0.0 26 291-316 11-36 (206)
94 KOG2128 Ras GTPase-activating 83.8 0.36 7.8E-06 64.0 0.0 67 887-964 539-612 (1401)
95 COG0572 Udk Uridine kinase [Nu 83.8 0.37 7.9E-06 53.1 0.0 26 293-318 6-33 (218)
96 TIGR03420 DnaA_homol_Hda DnaA 83.7 0.37 8.1E-06 52.7 0.0 29 290-318 35-63 (226)
97 COG5022 Myosin heavy chain [Cy 83.5 0.38 8.3E-06 64.1 0.0 85 883-967 793-888 (1463)
98 cd02027 APSK Adenosine 5'-phos 83.3 0.4 8.6E-06 49.7 0.0 23 296-318 2-24 (149)
99 PRK06547 hypothetical protein; 83.2 0.41 8.8E-06 51.0 0.0 28 290-317 12-39 (172)
100 PRK13851 type IV secretion sys 83.1 0.41 8.8E-06 56.5 0.0 27 293-319 162-188 (344)
101 PF03193 DUF258: Protein of un 83.1 0.41 8.9E-06 50.4 0.0 33 285-317 27-59 (161)
102 TIGR02525 plasmid_TraJ plasmid 83.1 0.41 9E-06 57.1 0.0 27 293-319 149-175 (372)
103 TIGR02928 orc1/cdc6 family rep 82.9 0.42 9.1E-06 56.4 0.0 31 289-319 36-66 (365)
104 cd00464 SK Shikimate kinase (S 82.9 0.42 9.2E-06 48.8 0.0 24 295-318 1-24 (154)
105 PF03266 NTPase_1: NTPase; In 82.9 0.42 9.2E-06 50.7 0.0 24 296-319 2-25 (168)
106 PF13245 AAA_19: Part of AAA d 82.9 0.42 9.2E-06 43.9 0.0 28 292-319 9-36 (76)
107 COG1125 OpuBA ABC-type proline 82.7 0.44 9.4E-06 53.4 0.0 28 295-322 29-56 (309)
108 PRK08084 DNA replication initi 82.2 0.48 1E-05 52.9 0.0 37 283-319 35-71 (235)
109 cd01120 RecA-like_NTPases RecA 82.1 0.48 1E-05 48.1 0.0 24 296-319 2-25 (165)
110 PRK00889 adenylylsulfate kinas 82.0 0.49 1.1E-05 50.0 0.0 27 293-319 4-30 (175)
111 PRK13900 type IV secretion sys 82.0 0.49 1.1E-05 55.7 0.0 27 293-319 160-186 (332)
112 cd02021 GntK Gluconate kinase 81.9 0.49 1.1E-05 48.4 0.0 22 296-317 2-23 (150)
113 PRK04182 cytidylate kinase; Pr 81.9 0.5 1.1E-05 49.6 0.0 23 295-317 2-24 (180)
114 PRK10751 molybdopterin-guanine 81.7 0.51 1.1E-05 50.4 0.0 26 295-320 8-33 (173)
115 TIGR01360 aden_kin_iso1 adenyl 81.7 0.51 1.1E-05 49.9 0.0 23 295-317 5-27 (188)
116 PRK09270 nucleoside triphospha 81.6 0.52 1.1E-05 52.3 0.0 33 290-322 30-62 (229)
117 COG1123 ATPase components of v 81.3 0.54 1.2E-05 58.1 0.0 29 292-320 34-62 (539)
118 PF03205 MobB: Molybdopterin g 80.9 0.57 1.2E-05 48.2 0.0 26 296-321 3-28 (140)
119 PRK04040 adenylate kinase; Pro 80.6 0.6 1.3E-05 50.4 0.0 25 294-318 3-27 (188)
120 PRK12377 putative replication 80.5 0.61 1.3E-05 52.7 0.0 44 274-319 84-127 (248)
121 PRK03846 adenylylsulfate kinas 80.3 0.62 1.4E-05 50.4 0.0 30 291-320 22-51 (198)
122 COG4608 AppF ABC-type oligopep 80.3 0.63 1.4E-05 52.7 0.0 32 291-322 37-68 (268)
123 COG1123 ATPase components of v 80.1 0.65 1.4E-05 57.4 0.0 30 292-321 316-345 (539)
124 PRK07667 uridine kinase; Provi 80.1 0.65 1.4E-05 50.2 0.0 25 295-319 19-43 (193)
125 PRK05057 aroK shikimate kinase 80.1 0.65 1.4E-05 49.3 0.0 25 293-317 4-28 (172)
126 COG1102 Cmk Cytidylate kinase 80.0 0.65 1.4E-05 48.7 0.0 23 296-318 3-25 (179)
127 KOG0163 Myosin class VI heavy 80.0 0.66 1.4E-05 57.7 0.0 27 885-911 815-841 (1259)
128 PF00005 ABC_tran: ABC transpo 79.9 0.66 1.4E-05 46.5 0.0 29 291-319 9-37 (137)
129 COG0563 Adk Adenylate kinase a 79.8 0.67 1.5E-05 49.7 0.0 21 296-316 3-23 (178)
130 PRK13764 ATPase; Provisional 79.7 0.68 1.5E-05 58.3 0.0 27 293-319 257-283 (602)
131 COG1493 HprK Serine kinase of 79.7 0.68 1.5E-05 52.9 0.0 24 293-316 145-168 (308)
132 COG4172 ABC-type uncharacteriz 79.5 0.69 1.5E-05 54.7 0.0 29 293-321 36-64 (534)
133 PRK14527 adenylate kinase; Pro 79.5 0.7 1.5E-05 49.6 0.0 27 292-318 5-31 (191)
134 PRK14961 DNA polymerase III su 79.3 0.71 1.5E-05 54.9 0.0 43 273-319 21-64 (363)
135 TIGR00554 panK_bact pantothena 79.3 0.71 1.5E-05 53.2 0.0 29 291-319 60-88 (290)
136 PRK00411 cdc6 cell division co 79.3 0.72 1.6E-05 55.1 0.0 31 289-319 51-81 (394)
137 PRK09825 idnK D-gluconate kina 79.0 0.74 1.6E-05 49.1 0.0 26 293-318 3-28 (176)
138 TIGR02533 type_II_gspE general 79.0 0.75 1.6E-05 56.9 0.0 26 294-319 243-268 (486)
139 PHA02544 44 clamp loader, smal 78.8 0.76 1.6E-05 53.2 0.0 26 292-317 42-67 (316)
140 TIGR01359 UMP_CMP_kin_fam UMP- 78.8 0.76 1.7E-05 48.6 0.0 23 296-318 2-24 (183)
141 PRK15093 antimicrobial peptide 78.8 0.76 1.7E-05 54.0 0.0 28 291-318 31-58 (330)
142 TIGR02868 CydC thiol reductant 78.7 0.78 1.7E-05 57.2 0.0 31 291-321 359-389 (529)
143 PRK06761 hypothetical protein; 78.7 0.78 1.7E-05 52.7 0.0 26 294-319 4-29 (282)
144 PRK13894 conjugal transfer ATP 78.6 0.78 1.7E-05 53.7 0.0 27 293-319 148-174 (319)
145 PRK05416 glmZ(sRNA)-inactivati 78.5 0.79 1.7E-05 52.9 0.0 20 294-313 7-26 (288)
146 PRK11308 dppF dipeptide transp 78.5 0.79 1.7E-05 53.8 0.0 28 291-318 39-66 (327)
147 PF00625 Guanylate_kin: Guanyl 78.5 0.79 1.7E-05 48.9 0.0 25 294-318 3-27 (183)
148 TIGR02788 VirB11 P-type DNA tr 78.4 0.8 1.7E-05 53.3 0.0 26 293-318 144-169 (308)
149 TIGR02673 FtsE cell division A 78.4 0.8 1.7E-05 49.9 0.0 28 291-318 26-53 (214)
150 PRK12608 transcription termina 78.4 0.8 1.7E-05 54.4 0.0 42 278-319 118-159 (380)
151 PRK15079 oligopeptide ABC tran 78.3 0.82 1.8E-05 53.8 0.0 29 291-319 45-73 (331)
152 PRK08356 hypothetical protein; 78.2 0.82 1.8E-05 49.4 0.0 21 295-315 7-27 (195)
153 COG1124 DppF ABC-type dipeptid 78.2 0.82 1.8E-05 51.0 0.0 32 291-322 31-62 (252)
154 PF07475 Hpr_kinase_C: HPr Ser 78.2 0.82 1.8E-05 48.5 0.0 24 292-315 17-40 (171)
155 PRK10436 hypothetical protein; 78.1 0.83 1.8E-05 56.1 0.0 28 293-320 218-245 (462)
156 cd03293 ABC_NrtD_SsuB_transpor 78.0 0.84 1.8E-05 50.0 0.0 28 291-318 28-55 (220)
157 cd03258 ABC_MetN_methionine_tr 78.0 0.84 1.8E-05 50.5 0.0 30 291-320 29-58 (233)
158 PRK09473 oppD oligopeptide tra 78.0 0.84 1.8E-05 53.6 0.0 28 291-318 40-67 (330)
159 COG4172 ABC-type uncharacteriz 77.8 0.86 1.9E-05 54.0 0.0 31 290-320 310-340 (534)
160 cd02029 PRK_like Phosphoribulo 77.7 0.88 1.9E-05 51.8 0.0 24 296-319 2-25 (277)
161 TIGR00455 apsK adenylylsulfate 77.6 0.88 1.9E-05 48.5 0.0 26 293-318 18-43 (184)
162 PRK00698 tmk thymidylate kinas 77.6 0.88 1.9E-05 48.9 0.0 26 294-319 4-29 (205)
163 PRK08727 hypothetical protein; 77.6 0.88 1.9E-05 50.7 0.0 28 292-319 40-67 (233)
164 PRK08903 DnaA regulatory inact 77.6 0.88 1.9E-05 50.1 0.0 29 291-319 40-68 (227)
165 TIGR00960 3a0501s02 Type II (G 77.5 0.89 1.9E-05 49.7 0.0 28 291-318 27-54 (216)
166 PF07728 AAA_5: AAA domain (dy 77.5 0.9 1.9E-05 45.9 0.0 22 296-317 2-23 (139)
167 cd03225 ABC_cobalt_CbiO_domain 77.4 0.9 2E-05 49.4 0.0 28 292-319 26-53 (211)
168 cd03115 SRP The signal recogni 77.4 0.9 2E-05 47.8 0.0 26 295-320 2-27 (173)
169 COG0529 CysC Adenylylsulfate k 77.4 0.9 2E-05 48.4 0.0 91 291-386 21-115 (197)
170 PRK12402 replication factor C 77.3 0.91 2E-05 52.8 0.0 30 290-319 33-62 (337)
171 cd03292 ABC_FtsE_transporter F 77.3 0.91 2E-05 49.4 0.0 28 291-318 25-52 (214)
172 cd03259 ABC_Carb_Solutes_like 77.2 0.92 2E-05 49.4 0.0 29 291-319 24-52 (213)
173 PF02367 UPF0079: Uncharacteri 77.2 0.93 2E-05 45.7 0.0 27 291-317 13-39 (123)
174 PRK11022 dppD dipeptide transp 77.1 0.93 2E-05 53.2 0.0 28 291-318 31-58 (326)
175 PRK03839 putative kinase; Prov 77.1 0.94 2E-05 48.1 0.0 22 296-317 3-24 (180)
176 TIGR01166 cbiO cobalt transpor 77.0 0.95 2.1E-05 48.5 0.0 28 291-318 16-43 (190)
177 PRK15177 Vi polysaccharide exp 77.0 0.95 2.1E-05 49.7 0.0 29 291-319 11-39 (213)
178 COG2274 SunT ABC-type bacterio 76.9 0.95 2.1E-05 58.3 0.0 31 292-322 498-528 (709)
179 PRK07003 DNA polymerase III su 76.8 0.97 2.1E-05 57.9 0.0 52 264-319 8-64 (830)
180 TIGR03574 selen_PSTK L-seryl-t 76.7 0.97 2.1E-05 50.7 0.0 24 296-319 2-25 (249)
181 cd03255 ABC_MJ0796_Lo1CDE_FtsE 76.6 0.99 2.2E-05 49.3 0.0 29 291-319 28-56 (218)
182 TIGR00176 mobB molybdopterin-g 76.3 1 2.2E-05 47.1 0.0 25 296-320 2-26 (155)
183 cd03260 ABC_PstB_phosphate_tra 76.3 1 2.2E-05 49.6 0.0 27 291-317 24-50 (227)
184 PHA02530 pseT polynucleotide k 76.2 1 2.2E-05 51.7 0.0 24 294-317 3-26 (300)
185 PF04665 Pox_A32: Poxvirus A32 76.1 1 2.3E-05 50.5 0.0 25 295-319 15-39 (241)
186 PRK15453 phosphoribulokinase; 76.1 1 2.3E-05 51.6 0.0 23 294-316 6-28 (290)
187 TIGR03499 FlhF flagellar biosy 76.1 1 2.3E-05 51.7 0.0 29 292-320 193-221 (282)
188 PF13555 AAA_29: P-loop contai 76.1 1 2.3E-05 39.9 0.0 20 295-314 25-44 (62)
189 TIGR03608 L_ocin_972_ABC putat 76.1 1 2.3E-05 48.6 0.0 27 292-318 23-49 (206)
190 PRK14531 adenylate kinase; Pro 76.0 1.1 2.3E-05 48.0 0.0 24 294-317 3-26 (183)
191 PRK14732 coaE dephospho-CoA ki 76.0 1.1 2.3E-05 48.9 0.0 47 296-343 2-53 (196)
192 PF14532 Sigma54_activ_2: Sigm 76.0 1.1 2.3E-05 45.7 0.0 26 291-316 19-44 (138)
193 KOG0924 mRNA splicing factor A 75.9 1.1 2.3E-05 55.8 0.0 110 290-402 368-492 (1042)
194 PRK14730 coaE dephospho-CoA ki 75.8 1.1 2.3E-05 48.7 0.0 21 296-316 4-24 (195)
195 PRK14964 DNA polymerase III su 75.8 1.1 2.3E-05 55.4 0.0 54 264-320 5-62 (491)
196 PRK14528 adenylate kinase; Pro 75.7 1.1 2.4E-05 48.2 0.0 24 294-317 2-25 (186)
197 cd03229 ABC_Class3 This class 75.6 1.1 2.4E-05 47.6 0.0 29 291-319 24-52 (178)
198 COG2805 PilT Tfp pilus assembl 75.6 1.1 2.4E-05 51.4 0.0 28 292-319 124-151 (353)
199 TIGR03410 urea_trans_UrtE urea 75.6 1.1 2.4E-05 49.4 0.0 31 291-321 24-54 (230)
200 PRK06893 DNA replication initi 75.5 1.1 2.4E-05 49.8 0.0 30 290-319 36-65 (229)
201 cd03296 ABC_CysA_sulfate_impor 75.5 1.1 2.4E-05 49.8 0.0 28 291-318 26-53 (239)
202 COG2884 FtsE Predicted ATPase 75.4 1.1 2.4E-05 48.3 0.0 24 294-317 29-52 (223)
203 cd03235 ABC_Metallic_Cations A 75.4 1.1 2.4E-05 48.7 0.0 28 291-318 23-50 (213)
204 cd03256 ABC_PhnC_transporter A 75.2 1.2 2.5E-05 49.5 0.0 28 291-318 25-52 (241)
205 PRK11176 lipid transporter ATP 75.1 1.2 2.5E-05 56.4 0.0 31 291-321 367-397 (582)
206 TIGR02881 spore_V_K stage V sp 75.1 1.2 2.5E-05 50.5 0.0 30 291-320 40-69 (261)
207 TIGR02315 ABC_phnC phosphonate 75.0 1.2 2.5E-05 49.6 0.0 28 291-318 26-53 (243)
208 TIGR01184 ntrCD nitrate transp 74.9 1.2 2.6E-05 49.4 0.0 29 292-320 10-38 (230)
209 cd01672 TMPK Thymidine monopho 74.8 1.2 2.6E-05 47.3 0.0 24 296-319 3-26 (200)
210 cd03224 ABC_TM1139_LivF_branch 74.8 1.2 2.6E-05 48.7 0.0 28 291-318 24-51 (222)
211 PRK00440 rfc replication facto 74.7 1.2 2.6E-05 51.3 0.0 31 288-318 33-63 (319)
212 PRK14956 DNA polymerase III su 74.6 1.2 2.6E-05 54.6 0.0 44 273-320 23-67 (484)
213 smart00072 GuKc Guanylate kina 74.6 1.2 2.6E-05 47.6 0.0 23 295-317 4-26 (184)
214 cd01983 Fer4_NifH The Fer4_Nif 74.6 1.2 2.7E-05 40.9 0.0 25 296-320 2-26 (99)
215 COG4619 ABC-type uncharacteriz 74.5 1.2 2.7E-05 47.1 0.0 26 292-317 28-53 (223)
216 PRK07196 fliI flagellum-specif 74.5 1.2 2.7E-05 54.0 0.0 43 275-317 137-179 (434)
217 PHA00729 NTP-binding motif con 74.4 1.2 2.7E-05 49.4 0.0 25 294-318 18-42 (226)
218 COG0802 Predicted ATPase or ki 74.4 1.3 2.7E-05 46.1 0.0 28 292-319 24-51 (149)
219 PF01637 Arch_ATPase: Archaeal 74.4 1.3 2.7E-05 48.1 0.0 32 286-317 13-44 (234)
220 PRK14733 coaE dephospho-CoA ki 74.4 1.3 2.7E-05 48.7 0.0 22 295-316 8-29 (204)
221 cd03219 ABC_Mj1267_LivG_branch 74.3 1.3 2.7E-05 49.1 0.0 28 291-318 24-51 (236)
222 PRK13645 cbiO cobalt transport 74.3 1.3 2.7E-05 51.0 0.0 30 291-320 35-64 (289)
223 cd03297 ABC_ModC_molybdenum_tr 74.3 1.3 2.7E-05 48.4 0.0 27 291-318 22-48 (214)
224 cd03223 ABCD_peroxisomal_ALDP 74.2 1.3 2.7E-05 46.7 0.0 29 291-319 25-53 (166)
225 cd02026 PRK Phosphoribulokinas 74.2 1.3 2.8E-05 50.8 0.0 23 296-318 2-24 (273)
226 TIGR02880 cbbX_cfxQ probable R 74.1 1.3 2.8E-05 51.0 0.0 27 295-321 60-86 (284)
227 PRK13768 GTPase; Provisional 73.9 1.3 2.9E-05 50.0 0.0 27 295-321 4-30 (253)
228 PRK05537 bifunctional sulfate 73.7 1.3 2.9E-05 55.7 0.0 44 274-319 375-418 (568)
229 PRK13342 recombination factor 73.7 1.3 2.9E-05 53.6 0.0 42 274-316 18-59 (413)
230 cd03262 ABC_HisP_GlnQ_permease 73.7 1.3 2.9E-05 48.1 0.0 28 291-318 24-51 (213)
231 PRK00023 cmk cytidylate kinase 73.7 1.3 2.9E-05 49.1 0.0 25 294-318 5-29 (225)
232 PLN02796 D-glycerate 3-kinase 73.7 1.3 2.9E-05 52.1 0.0 24 296-319 103-126 (347)
233 PF13479 AAA_24: AAA domain 73.6 1.3 2.9E-05 48.5 0.0 22 292-313 2-23 (213)
234 COG1428 Deoxynucleoside kinase 73.6 1.4 2.9E-05 48.4 0.0 59 293-364 4-62 (216)
235 TIGR03864 PQQ_ABC_ATP ABC tran 73.6 1.4 2.9E-05 49.0 0.0 28 291-318 25-52 (236)
236 cd03270 ABC_UvrA_I The excisio 73.6 1.4 2.9E-05 48.9 0.0 21 291-311 19-39 (226)
237 cd03226 ABC_cobalt_CbiO_domain 73.6 1.4 2.9E-05 47.9 0.0 28 291-318 24-51 (205)
238 TIGR02538 type_IV_pilB type IV 73.6 1.4 2.9E-05 55.7 0.0 26 293-318 316-341 (564)
239 PRK02496 adk adenylate kinase; 73.5 1.4 3E-05 47.0 0.0 22 296-317 4-25 (184)
240 PRK11124 artP arginine transpo 73.4 1.4 3E-05 49.1 0.0 28 291-318 26-53 (242)
241 cd03268 ABC_BcrA_bacitracin_re 73.4 1.4 3E-05 47.9 0.0 28 291-318 24-51 (208)
242 PRK03731 aroL shikimate kinase 73.4 1.4 3E-05 46.2 0.0 25 294-318 3-27 (171)
243 cd03294 ABC_Pro_Gly_Bertaine T 73.3 1.4 3E-05 50.1 0.0 29 291-319 48-76 (269)
244 PRK10646 ADP-binding protein; 73.3 1.4 3E-05 46.1 0.0 25 294-318 29-53 (153)
245 cd03230 ABC_DR_subfamily_A Thi 73.2 1.4 3.1E-05 46.5 0.0 29 291-319 24-52 (173)
246 cd01124 KaiC KaiC is a circadi 73.2 1.4 3.1E-05 46.5 0.0 26 295-320 1-26 (187)
247 PF00158 Sigma54_activat: Sigm 73.1 1.4 3.1E-05 46.7 0.0 25 292-316 21-45 (168)
248 COG2804 PulE Type II secretory 73.1 1.4 3.1E-05 53.8 0.0 30 292-321 256-286 (500)
249 cd03301 ABC_MalK_N The N-termi 73.0 1.4 3.1E-05 47.9 0.0 28 292-319 25-52 (213)
250 cd03222 ABC_RNaseL_inhibitor T 73.0 1.4 3.1E-05 47.1 0.0 31 291-321 23-53 (177)
251 PRK11248 tauB taurine transpor 72.9 1.5 3.1E-05 49.6 0.0 28 292-319 26-53 (255)
252 PRK10584 putative ABC transpor 72.8 1.5 3.1E-05 48.4 0.0 29 291-319 34-62 (228)
253 PRK14530 adenylate kinase; Pro 72.8 1.5 3.1E-05 48.2 0.0 24 295-318 5-28 (215)
254 PRK06645 DNA polymerase III su 72.8 1.5 3.2E-05 54.6 0.0 45 273-320 26-70 (507)
255 PRK10908 cell division protein 72.8 1.5 3.2E-05 48.2 0.0 28 291-318 26-53 (222)
256 cd03266 ABC_NatA_sodium_export 72.7 1.5 3.2E-05 48.0 0.0 28 291-318 29-56 (218)
257 cd03234 ABCG_White The White s 72.7 1.5 3.2E-05 48.4 0.0 28 291-318 31-58 (226)
258 TIGR02211 LolD_lipo_ex lipopro 72.7 1.5 3.2E-05 48.1 0.0 29 291-319 29-57 (221)
259 cd02034 CooC The accessory pro 72.7 1.5 3.2E-05 43.7 0.0 25 296-320 2-26 (116)
260 PRK10884 SH3 domain-containing 72.7 1.5 3.2E-05 48.2 0.0 41 1002-1042 118-158 (206)
261 PRK11247 ssuB aliphatic sulfon 72.6 1.5 3.2E-05 49.7 0.0 28 292-319 37-64 (257)
262 cd03116 MobB Molybdenum is an 72.6 1.5 3.2E-05 46.2 0.0 27 295-321 3-29 (159)
263 TIGR00152 dephospho-CoA kinase 72.6 1.5 3.2E-05 47.0 0.0 46 296-342 2-53 (188)
264 cd03261 ABC_Org_Solvent_Resist 72.6 1.5 3.2E-05 48.6 0.0 29 291-319 24-52 (235)
265 PRK11174 cysteine/glutathione 72.5 1.5 3.2E-05 55.5 0.0 27 291-317 374-400 (588)
266 cd03218 ABC_YhbG The ABC trans 72.5 1.5 3.3E-05 48.4 0.0 28 291-318 24-51 (232)
267 PRK10416 signal recognition pa 72.4 1.5 3.3E-05 51.3 0.0 31 291-321 112-142 (318)
268 TIGR00972 3a0107s01c2 phosphat 72.4 1.5 3.3E-05 49.0 0.0 28 291-318 25-52 (247)
269 cd03236 ABC_RNaseL_inhibitor_d 72.4 1.5 3.3E-05 49.6 0.0 32 291-322 24-55 (255)
270 PF01580 FtsK_SpoIIIE: FtsK/Sp 72.4 1.5 3.3E-05 47.5 0.0 26 295-320 40-65 (205)
271 cd03265 ABC_DrrA DrrA is the A 72.4 1.5 3.3E-05 48.0 0.0 27 292-318 25-51 (220)
272 PRK13539 cytochrome c biogenes 72.3 1.5 3.3E-05 47.7 0.0 28 291-318 26-53 (207)
273 PF01695 IstB_IS21: IstB-like 72.3 1.5 3.3E-05 46.9 0.0 28 292-319 46-73 (178)
274 PRK14974 cell division protein 72.2 1.5 3.3E-05 51.6 0.0 30 291-320 138-167 (336)
275 TIGR02323 CP_lyasePhnK phospho 72.2 1.5 3.3E-05 49.1 0.0 29 291-319 27-55 (253)
276 PRK13657 cyclic beta-1,2-gluca 72.2 1.5 3.4E-05 55.4 0.0 31 291-321 359-389 (588)
277 COG1126 GlnQ ABC-type polar am 72.1 1.6 3.4E-05 48.1 0.0 22 292-313 27-48 (240)
278 TIGR01978 sufC FeS assembly AT 72.1 1.6 3.4E-05 48.6 0.0 27 291-317 24-50 (243)
279 COG1136 SalX ABC-type antimicr 72.0 1.6 3.4E-05 48.6 0.0 22 292-313 30-51 (226)
280 PRK11629 lolD lipoprotein tran 72.0 1.6 3.4E-05 48.4 0.0 28 291-318 33-60 (233)
281 PRK13538 cytochrome c biogenes 71.9 1.6 3.4E-05 47.4 0.0 28 292-319 26-53 (204)
282 PF00308 Bac_DnaA: Bacterial d 71.8 1.6 3.5E-05 48.3 0.0 26 294-319 35-60 (219)
283 PRK09111 DNA polymerase III su 71.8 1.6 3.5E-05 55.3 0.0 32 289-320 42-73 (598)
284 PRK09493 glnQ glutamine ABC tr 71.8 1.6 3.5E-05 48.5 0.0 29 291-319 25-53 (240)
285 PRK13947 shikimate kinase; Pro 71.8 1.6 3.5E-05 45.6 0.0 23 295-317 3-25 (171)
286 cd03237 ABC_RNaseL_inhibitor_d 71.6 1.6 3.5E-05 49.0 0.0 28 292-319 24-51 (246)
287 cd03257 ABC_NikE_OppD_transpor 71.6 1.6 3.5E-05 47.9 0.0 28 291-318 29-56 (228)
288 TIGR02902 spore_lonB ATP-depen 71.6 1.6 3.5E-05 54.6 0.0 28 290-317 83-110 (531)
289 PRK14242 phosphate transporter 71.5 1.7 3.6E-05 48.8 0.0 27 291-317 30-56 (253)
290 cd01128 rho_factor Transcripti 71.4 1.7 3.6E-05 49.2 0.0 39 281-319 4-42 (249)
291 cd03269 ABC_putative_ATPase Th 71.4 1.7 3.6E-05 47.3 0.0 28 291-318 24-51 (210)
292 cd03215 ABC_Carb_Monos_II This 71.3 1.7 3.6E-05 46.3 0.0 30 291-320 24-53 (182)
293 PRK08116 hypothetical protein; 71.3 1.7 3.6E-05 49.7 0.0 28 293-320 114-141 (268)
294 PRK05428 HPr kinase/phosphoryl 71.2 1.7 3.6E-05 50.5 0.0 24 293-316 146-169 (308)
295 TIGR02770 nickel_nikD nickel i 71.2 1.7 3.7E-05 48.1 0.0 28 291-318 10-37 (230)
296 TIGR00017 cmk cytidylate kinas 71.2 1.7 3.7E-05 48.1 0.0 24 295-318 4-27 (217)
297 PRK13695 putative NTPase; Prov 71.1 1.7 3.7E-05 45.9 0.0 24 296-319 3-26 (174)
298 cd03245 ABCC_bacteriocin_expor 71.1 1.7 3.7E-05 47.5 0.0 28 291-318 28-55 (220)
299 PRK09087 hypothetical protein; 71.0 1.7 3.7E-05 48.3 0.0 23 293-315 44-66 (226)
300 PRK06620 hypothetical protein; 71.0 1.7 3.7E-05 47.9 0.0 22 294-315 45-66 (214)
301 PRK01184 hypothetical protein; 71.0 1.7 3.7E-05 46.2 0.0 19 295-313 3-21 (184)
302 cd03254 ABCC_Glucan_exporter_l 70.9 1.7 3.8E-05 47.8 0.0 29 291-319 27-55 (229)
303 PRK14957 DNA polymerase III su 70.9 1.7 3.8E-05 54.3 0.0 45 273-320 21-65 (546)
304 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 70.9 1.7 3.8E-05 47.9 0.0 28 291-318 46-73 (224)
305 TIGR00968 3a0106s01 sulfate AB 70.7 1.8 3.8E-05 48.2 0.0 29 291-319 24-52 (237)
306 PRK13646 cbiO cobalt transport 70.6 1.8 3.9E-05 49.8 0.0 30 291-320 31-60 (286)
307 PF06414 Zeta_toxin: Zeta toxi 70.6 1.8 3.9E-05 46.9 0.0 29 290-318 12-40 (199)
308 TIGR03005 ectoine_ehuA ectoine 70.5 1.8 3.9E-05 48.6 0.0 27 292-318 25-51 (252)
309 PRK14963 DNA polymerase III su 70.5 1.8 3.9E-05 53.8 0.0 44 274-320 20-63 (504)
310 cd03298 ABC_ThiQ_thiamine_tran 70.5 1.8 3.9E-05 47.1 0.0 28 291-318 22-49 (211)
311 COG4107 PhnK ABC-type phosphon 70.5 1.8 3.9E-05 45.9 0.0 26 294-319 33-58 (258)
312 PRK14251 phosphate ABC transpo 70.5 1.8 3.9E-05 48.5 0.0 27 291-317 28-54 (251)
313 cd03238 ABC_UvrA The excision 70.4 1.8 3.9E-05 46.3 0.0 24 291-314 19-42 (176)
314 PRK10790 putative multidrug tr 70.4 1.8 3.9E-05 54.8 0.0 30 291-320 365-394 (592)
315 PRK13541 cytochrome c biogenes 70.4 1.8 3.9E-05 46.6 0.0 28 291-318 24-51 (195)
316 TIGR02203 MsbA_lipidA lipid A 70.3 1.8 4E-05 54.4 0.0 32 291-322 356-387 (571)
317 TIGR01277 thiQ thiamine ABC tr 70.3 1.8 4E-05 47.2 0.0 29 291-319 22-50 (213)
318 cd03231 ABC_CcmA_heme_exporter 70.3 1.8 4E-05 46.8 0.0 29 291-319 24-52 (201)
319 TIGR02324 CP_lyasePhnL phospho 70.3 1.8 4E-05 47.5 0.0 29 291-319 32-60 (224)
320 TIGR02204 MsbA_rel ABC transpo 70.2 1.8 4E-05 54.5 0.0 29 291-319 364-392 (576)
321 PRK13648 cbiO cobalt transport 70.2 1.8 4E-05 49.1 0.0 29 291-319 33-61 (269)
322 PRK10419 nikE nickel transport 70.2 1.8 4E-05 49.1 0.0 28 291-318 36-63 (268)
323 PRK13638 cbiO cobalt transport 70.2 1.9 4E-05 49.1 0.0 28 292-319 26-53 (271)
324 PRK07429 phosphoribulokinase; 70.1 1.9 4E-05 50.8 0.0 24 294-317 9-32 (327)
325 PRK13946 shikimate kinase; Pro 70.1 1.9 4E-05 46.2 0.0 26 292-317 9-34 (184)
326 PRK06526 transposase; Provisio 70.1 1.9 4E-05 48.9 0.0 28 292-319 97-124 (254)
327 TIGR00041 DTMP_kinase thymidyl 70.1 1.9 4E-05 46.2 0.0 26 294-319 4-29 (195)
328 PRK14962 DNA polymerase III su 70.0 1.9 4.1E-05 53.2 0.0 43 273-319 19-62 (472)
329 PF08283 Gemini_AL1_M: Geminiv 70.0 1.9 4.1E-05 42.4 0.0 64 232-308 41-105 (106)
330 cd03263 ABC_subfamily_A The AB 70.0 1.9 4.1E-05 47.2 0.0 27 292-318 27-53 (220)
331 TIGR01288 nodI ATP-binding ABC 70.0 1.9 4.1E-05 50.0 0.0 29 291-319 28-56 (303)
332 TIGR00101 ureG urease accessor 70.0 1.9 4.1E-05 47.0 0.0 25 295-319 3-27 (199)
333 PF13173 AAA_14: AAA domain 69.9 1.9 4.1E-05 43.2 0.0 26 293-318 2-27 (128)
334 cd03264 ABC_drug_resistance_li 69.8 1.9 4.1E-05 46.9 0.0 25 295-319 27-51 (211)
335 PRK14248 phosphate ABC transpo 69.8 1.9 4.1E-05 48.9 0.0 27 291-317 45-71 (268)
336 PRK11264 putative amino-acid A 69.8 1.9 4.1E-05 48.2 0.0 28 291-318 27-54 (250)
337 PRK04220 2-phosphoglycerate ki 69.8 1.9 4.1E-05 49.9 0.0 27 291-317 90-116 (301)
338 cd03214 ABC_Iron-Siderophores_ 69.8 1.9 4.1E-05 45.8 0.0 29 291-319 23-51 (180)
339 TIGR01193 bacteriocin_ABC ABC- 69.8 1.9 4.2E-05 55.8 0.0 30 291-320 498-527 (708)
340 PRK09544 znuC high-affinity zi 69.7 1.9 4.2E-05 48.6 0.0 29 291-319 28-56 (251)
341 TIGR03238 dnd_assoc_3 dnd syst 69.7 1.9 4.2E-05 52.7 0.0 21 291-311 30-50 (504)
342 cd03244 ABCC_MRP_domain2 Domai 69.7 1.9 4.2E-05 47.1 0.0 29 291-319 28-56 (221)
343 cd01428 ADK Adenylate kinase ( 69.7 1.9 4.2E-05 45.8 0.0 22 296-317 2-23 (194)
344 PRK14247 phosphate ABC transpo 69.6 1.9 4.2E-05 48.2 0.0 28 291-318 27-54 (250)
345 PLN03025 replication factor C 69.6 1.9 4.2E-05 50.3 0.0 35 284-318 25-59 (319)
346 PRK05439 pantothenate kinase; 69.6 1.9 4.2E-05 50.2 0.0 29 291-319 84-112 (311)
347 TIGR00679 hpr-ser Hpr(Ser) kin 69.6 1.9 4.2E-05 49.8 0.0 24 293-316 146-169 (304)
348 cd03283 ABC_MutS-like MutS-lik 69.6 1.9 4.2E-05 46.9 0.0 21 294-314 26-46 (199)
349 cd03252 ABCC_Hemolysin The ABC 69.5 2 4.3E-05 47.7 0.0 29 291-319 26-54 (237)
350 PF00448 SRP54: SRP54-type pro 69.4 2 4.3E-05 46.8 0.0 28 293-320 1-28 (196)
351 PRK13632 cbiO cobalt transport 69.4 2 4.3E-05 48.9 0.0 29 291-319 33-61 (271)
352 PRK09112 DNA polymerase III su 69.4 2 4.3E-05 51.0 0.0 38 282-319 33-71 (351)
353 TIGR03771 anch_rpt_ABC anchore 69.4 2 4.3E-05 47.4 0.0 28 292-319 5-32 (223)
354 PRK00625 shikimate kinase; Pro 69.4 2 4.3E-05 45.9 0.0 22 296-317 3-24 (173)
355 cd03250 ABCC_MRP_domain1 Domai 69.3 2 4.3E-05 46.5 0.0 29 291-319 29-57 (204)
356 TIGR02857 CydD thiol reductant 69.3 2 4.3E-05 53.6 0.0 29 291-319 346-374 (529)
357 PRK13540 cytochrome c biogenes 69.3 2 4.3E-05 46.4 0.0 28 291-318 25-52 (200)
358 TIGR00678 holB DNA polymerase 69.2 2 4.4E-05 45.9 0.0 30 290-319 11-40 (188)
359 PRK14267 phosphate ABC transpo 69.2 2 4.4E-05 48.1 0.0 28 291-318 28-55 (253)
360 cd03267 ABC_NatA_like Similar 69.2 2 4.4E-05 47.8 0.0 28 291-318 45-72 (236)
361 PRK14238 phosphate transporter 69.1 2 4.4E-05 48.9 0.0 28 291-318 48-75 (271)
362 PRK11300 livG leucine/isoleuci 69.1 2 4.4E-05 48.1 0.0 28 291-318 29-56 (255)
363 PRK10247 putative ABC transpor 69.1 2 4.4E-05 47.3 0.0 27 291-317 31-57 (225)
364 cd03232 ABC_PDR_domain2 The pl 69.0 2 4.4E-05 46.1 0.0 26 291-316 31-56 (192)
365 TIGR02858 spore_III_AA stage I 69.0 2.1 4.4E-05 49.1 0.0 35 286-320 104-138 (270)
366 PRK14250 phosphate ABC transpo 69.0 2.1 4.4E-05 47.8 0.0 27 292-318 28-54 (241)
367 PRK14969 DNA polymerase III su 68.9 2.1 4.5E-05 53.6 0.0 44 273-319 21-64 (527)
368 COG1618 Predicted nucleotide k 68.8 2.1 4.5E-05 45.1 0.0 26 295-320 7-32 (179)
369 KOG3354 Gluconate kinase [Carb 68.8 2.1 4.5E-05 44.7 0.0 25 294-318 13-37 (191)
370 TIGR01351 adk adenylate kinase 68.8 2.1 4.5E-05 46.8 0.0 22 296-317 2-23 (210)
371 cd03247 ABCC_cytochrome_bd The 68.8 2.1 4.5E-05 45.4 0.0 29 291-319 26-54 (178)
372 TIGR01189 ccmA heme ABC export 68.8 2.1 4.5E-05 46.2 0.0 27 292-318 25-51 (198)
373 TIGR02903 spore_lon_C ATP-depe 68.7 2.1 4.5E-05 54.6 0.0 28 291-318 173-200 (615)
374 PRK10771 thiQ thiamine transpo 68.7 2.1 4.6E-05 47.4 0.0 29 291-319 23-51 (232)
375 PRK10619 histidine/lysine/argi 68.7 2.1 4.6E-05 48.2 0.0 27 292-318 30-56 (257)
376 cd00046 DEXDc DEAD-like helica 68.6 2.1 4.6E-05 41.6 0.0 26 295-320 2-27 (144)
377 TIGR03797 NHPM_micro_ABC2 NHPM 68.6 2.1 4.6E-05 55.2 0.0 32 291-322 477-508 (686)
378 COG1132 MdlB ABC-type multidru 68.6 2.1 4.6E-05 53.9 0.0 31 291-321 353-383 (567)
379 TIGR01188 drrA daunorubicin re 68.6 2.1 4.6E-05 49.5 0.0 30 291-320 17-46 (302)
380 PRK06851 hypothetical protein; 68.6 2.1 4.6E-05 51.0 0.0 31 290-320 27-57 (367)
381 cd03295 ABC_OpuCA_Osmoprotecti 68.6 2.1 4.6E-05 47.7 0.0 28 291-318 25-52 (242)
382 cd03233 ABC_PDR_domain1 The pl 68.5 2.1 4.6E-05 46.4 0.0 28 291-318 31-58 (202)
383 cd03112 CobW_like The function 68.5 2.1 4.6E-05 44.7 0.0 22 296-317 3-24 (158)
384 TIGR00635 ruvB Holliday juncti 68.5 2.1 4.6E-05 49.2 0.0 27 291-317 28-54 (305)
385 PRK10744 pstB phosphate transp 68.5 2.1 4.6E-05 48.3 0.0 27 291-317 37-63 (260)
386 cd01876 YihA_EngB The YihA (En 68.4 2.1 4.6E-05 43.3 0.0 25 296-320 2-28 (170)
387 PRK10575 iron-hydroxamate tran 68.3 2.2 4.7E-05 48.4 0.0 28 291-318 35-62 (265)
388 cd03249 ABC_MTABC3_MDL1_MDL2 M 68.3 2.2 4.7E-05 47.4 0.0 29 291-319 27-55 (238)
389 PRK00279 adk adenylate kinase; 68.3 2.2 4.7E-05 46.8 0.0 24 295-318 2-25 (215)
390 PRK14532 adenylate kinase; Pro 68.3 2.2 4.7E-05 45.6 0.0 23 295-317 2-24 (188)
391 cd03246 ABCC_Protease_Secretio 68.3 2.2 4.7E-05 45.1 0.0 28 291-318 26-53 (173)
392 PRK10418 nikD nickel transport 68.2 2.2 4.7E-05 48.0 0.0 28 291-318 27-54 (254)
393 PRK14273 phosphate ABC transpo 68.2 2.2 4.7E-05 47.9 0.0 28 291-318 31-58 (254)
394 PRK11701 phnK phosphonate C-P 68.1 2.2 4.8E-05 48.1 0.0 28 291-318 30-57 (258)
395 PRK13631 cbiO cobalt transport 68.1 2.2 4.8E-05 50.0 0.0 30 291-320 50-79 (320)
396 cd03221 ABCF_EF-3 ABCF_EF-3 E 68.0 2.2 4.8E-05 43.8 0.0 28 291-318 24-51 (144)
397 PLN02200 adenylate kinase fami 68.0 2.2 4.8E-05 47.7 0.0 25 293-317 43-67 (234)
398 PRK13949 shikimate kinase; Pro 67.9 2.2 4.9E-05 45.2 0.0 24 295-318 3-26 (169)
399 cd03213 ABCG_EPDR ABCG transpo 67.9 2.2 4.9E-05 46.0 0.0 27 291-317 33-59 (194)
400 PLN02318 phosphoribulokinase/u 67.8 2.3 4.9E-05 53.4 0.0 43 275-317 46-89 (656)
401 cd03290 ABCC_SUR1_N The SUR do 67.8 2.3 4.9E-05 46.6 0.0 28 291-318 25-52 (218)
402 PRK13548 hmuV hemin importer A 67.7 2.3 4.9E-05 48.1 0.0 28 291-318 26-53 (258)
403 TIGR03411 urea_trans_UrtD urea 67.7 2.3 4.9E-05 47.3 0.0 27 292-318 27-53 (242)
404 PRK14263 phosphate ABC transpo 67.6 2.3 5E-05 48.2 0.0 27 291-317 32-58 (261)
405 PRK15112 antimicrobial peptide 67.5 2.3 5E-05 48.3 0.0 28 292-319 38-65 (267)
406 PRK14959 DNA polymerase III su 67.5 2.3 5E-05 53.9 0.0 43 273-319 21-64 (624)
407 TIGR00064 ftsY signal recognit 67.5 2.3 5E-05 48.7 0.0 30 291-320 70-99 (272)
408 PRK13649 cbiO cobalt transport 67.4 2.3 5E-05 48.5 0.0 29 291-319 31-59 (280)
409 cd03369 ABCC_NFT1 Domain 2 of 67.4 2.3 5E-05 46.1 0.0 29 291-319 32-60 (207)
410 PRK14240 phosphate transporter 67.4 2.3 5.1E-05 47.5 0.0 26 292-317 28-53 (250)
411 TIGR03375 type_I_sec_LssB type 67.3 2.3 5.1E-05 54.9 0.0 31 291-321 489-519 (694)
412 PRK12339 2-phosphoglycerate ki 67.3 2.4 5.1E-05 46.3 0.0 23 295-317 5-27 (197)
413 PRK04195 replication factor C 67.3 2.4 5.1E-05 52.5 0.0 25 293-317 39-63 (482)
414 PF12774 AAA_6: Hydrolytic ATP 67.3 2.4 5.1E-05 47.5 0.0 40 280-319 18-58 (231)
415 TIGR02769 nickel_nikE nickel i 67.3 2.4 5.1E-05 48.1 0.0 28 291-318 35-62 (265)
416 PRK05342 clpX ATP-dependent pr 67.2 2.4 5.1E-05 51.4 0.0 25 293-317 108-132 (412)
417 TIGR02982 heterocyst_DevA ABC 67.1 2.4 5.2E-05 46.5 0.0 28 291-318 29-56 (220)
418 PRK15056 manganese/iron transp 67.1 2.4 5.2E-05 48.3 0.0 27 292-318 32-58 (272)
419 PRK13543 cytochrome c biogenes 67.1 2.4 5.2E-05 46.4 0.0 28 292-319 36-63 (214)
420 cd03248 ABCC_TAP TAP, the Tran 67.1 2.4 5.2E-05 46.6 0.0 28 291-318 38-65 (226)
421 cd02022 DPCK Dephospho-coenzym 67.0 2.4 5.2E-05 45.2 0.0 20 296-315 2-21 (179)
422 PRK14269 phosphate ABC transpo 67.0 2.4 5.2E-05 47.4 0.0 27 291-317 26-52 (246)
423 PRK14255 phosphate ABC transpo 67.0 2.4 5.2E-05 47.5 0.0 26 291-316 29-54 (252)
424 PF13476 AAA_23: AAA domain; P 66.9 2.4 5.2E-05 44.8 0.0 26 292-317 18-43 (202)
425 PRK08154 anaerobic benzoate ca 66.9 2.4 5.3E-05 49.4 0.0 42 276-317 116-157 (309)
426 cd03228 ABCC_MRP_Like The MRP 66.9 2.4 5.3E-05 44.6 0.0 29 291-319 26-54 (171)
427 PTZ00112 origin recognition co 66.8 2.4 5.3E-05 55.0 0.0 29 291-319 779-807 (1164)
428 PRK13975 thymidylate kinase; P 66.8 2.4 5.3E-05 45.3 0.0 25 294-318 3-27 (196)
429 cd03273 ABC_SMC2_euk Eukaryoti 66.8 2.4 5.3E-05 47.6 0.0 26 293-318 25-50 (251)
430 cd03216 ABC_Carb_Monos_I This 66.7 2.5 5.3E-05 44.4 0.0 29 291-319 24-52 (163)
431 PRK06315 type III secretion sy 66.7 2.5 5.3E-05 51.6 0.0 42 276-317 147-188 (442)
432 cd01673 dNK Deoxyribonucleosid 66.7 2.5 5.4E-05 45.3 0.0 22 296-317 2-23 (193)
433 PRK13477 bifunctional pantoate 66.6 2.5 5.4E-05 52.5 0.0 27 292-318 283-309 (512)
434 PRK11153 metN DL-methionine tr 66.6 2.5 5.4E-05 50.0 0.0 29 291-319 29-57 (343)
435 PRK10522 multidrug transporter 66.6 2.5 5.4E-05 53.1 0.0 31 291-321 347-377 (547)
436 PRK14274 phosphate ABC transpo 66.6 2.5 5.4E-05 47.7 0.0 27 291-317 36-62 (259)
437 PRK07952 DNA replication prote 66.6 2.5 5.4E-05 47.7 0.0 28 293-320 99-126 (244)
438 PRK13639 cbiO cobalt transport 66.5 2.5 5.4E-05 48.2 0.0 29 291-319 26-54 (275)
439 COG3839 MalK ABC-type sugar tr 66.5 2.5 5.4E-05 49.7 0.0 20 294-313 30-49 (338)
440 TIGR02640 gas_vesic_GvpN gas v 66.4 2.5 5.4E-05 48.0 0.0 39 274-315 5-43 (262)
441 PRK10261 glutathione transport 66.4 2.5 5.4E-05 54.0 0.0 29 292-320 41-69 (623)
442 PRK10895 lipopolysaccharide AB 66.4 2.5 5.5E-05 47.0 0.0 28 291-318 27-54 (241)
443 COG1131 CcmA ABC-type multidru 66.3 2.5 5.5E-05 48.8 0.0 31 292-322 30-60 (293)
444 PRK14493 putative bifunctional 66.3 2.5 5.5E-05 48.4 0.0 27 295-321 3-29 (274)
445 PRK11144 modC molybdate transp 66.2 2.6 5.6E-05 50.1 0.0 27 292-318 23-49 (352)
446 COG1936 Predicted nucleotide k 66.1 2.6 5.6E-05 44.9 0.0 19 296-314 3-21 (180)
447 PRK14268 phosphate ABC transpo 66.1 2.6 5.6E-05 47.5 0.0 26 292-317 37-62 (258)
448 PRK14239 phosphate transporter 66.1 2.6 5.6E-05 47.2 0.0 25 292-316 30-54 (252)
449 PRK14265 phosphate ABC transpo 66.0 2.6 5.6E-05 48.1 0.0 27 291-317 44-70 (274)
450 PRK11831 putative ABC transpor 66.0 2.6 5.6E-05 47.9 0.0 28 291-318 31-58 (269)
451 PRK09984 phosphonate/organopho 65.9 2.6 5.7E-05 47.6 0.0 28 291-318 28-55 (262)
452 PF12775 AAA_7: P-loop contain 65.8 2.6 5.7E-05 48.2 0.0 24 292-315 32-55 (272)
453 TIGR03740 galliderm_ABC gallid 65.8 2.6 5.7E-05 46.2 0.0 28 291-318 24-51 (223)
454 cd01136 ATPase_flagellum-secre 65.8 2.6 5.7E-05 49.4 0.0 44 275-318 51-94 (326)
455 PRK14237 phosphate transporter 65.8 2.6 5.7E-05 47.8 0.0 27 291-317 44-70 (267)
456 PRK10851 sulfate/thiosulfate t 65.8 2.6 5.7E-05 50.0 0.0 27 292-318 27-53 (353)
457 PRK14731 coaE dephospho-CoA ki 65.7 2.7 5.7E-05 46.1 0.0 21 296-316 8-28 (208)
458 PRK09183 transposase/IS protei 65.7 2.7 5.8E-05 47.8 0.0 26 293-318 102-127 (259)
459 PRK03695 vitamin B12-transport 65.6 2.7 5.8E-05 47.2 0.0 27 291-317 20-46 (248)
460 cd01394 radB RadB. The archaea 65.6 2.7 5.8E-05 46.0 0.0 28 292-319 18-45 (218)
461 CHL00081 chlI Mg-protoporyphyr 65.6 2.7 5.8E-05 49.8 0.0 27 293-319 38-64 (350)
462 PRK14244 phosphate ABC transpo 65.6 2.7 5.8E-05 47.1 0.0 27 291-317 29-55 (251)
463 PRK13640 cbiO cobalt transport 65.5 2.7 5.9E-05 48.2 0.0 29 291-319 31-59 (282)
464 cd03282 ABC_MSH4_euk MutS4 hom 65.5 2.7 5.9E-05 46.0 0.0 29 293-321 29-59 (204)
465 PRK14241 phosphate transporter 65.4 2.7 5.9E-05 47.3 0.0 27 292-318 29-55 (258)
466 cd00267 ABC_ATPase ABC (ATP-bi 65.4 2.7 5.9E-05 43.5 0.0 27 291-317 23-49 (157)
467 PRK14270 phosphate ABC transpo 65.3 2.7 5.9E-05 47.0 0.0 27 291-317 28-54 (251)
468 COG0630 VirB11 Type IV secreto 65.3 2.7 5.9E-05 49.0 0.0 28 292-319 142-169 (312)
469 PRK14235 phosphate transporter 65.3 2.7 5.9E-05 47.6 0.0 27 291-317 43-69 (267)
470 PRK08181 transposase; Validate 65.3 2.7 6E-05 48.0 0.0 29 292-320 105-133 (269)
471 PRK13547 hmuV hemin importer A 65.3 2.7 6E-05 48.0 0.0 28 291-318 25-52 (272)
472 TIGR03796 NHPM_micro_ABC1 NHPM 65.3 2.7 6E-05 54.4 0.0 31 291-321 503-533 (710)
473 TIGR01242 26Sp45 26S proteasom 65.3 2.7 6E-05 49.9 0.0 25 293-317 156-180 (364)
474 PF03215 Rad17: Rad17 cell cyc 65.2 2.8 6E-05 52.3 0.0 26 293-318 45-70 (519)
475 PRK11614 livF leucine/isoleuci 65.2 2.8 6E-05 46.5 0.0 28 291-318 29-56 (237)
476 CHL00181 cbbX CbbX; Provisiona 65.1 2.8 6E-05 48.4 0.0 27 295-321 61-87 (287)
477 PRK14950 DNA polymerase III su 65.1 2.8 6E-05 53.2 0.0 45 273-320 21-65 (585)
478 CHL00131 ycf16 sulfate ABC tra 65.1 2.8 6E-05 46.9 0.0 26 291-316 31-56 (252)
479 cd03217 ABC_FeS_Assembly ABC-t 65.1 2.8 6E-05 45.4 0.0 27 291-317 24-50 (200)
480 PRK11160 cysteine/glutathione 65.1 2.8 6E-05 53.0 0.0 32 291-322 364-395 (574)
481 PRK14262 phosphate ABC transpo 65.0 2.8 6.1E-05 46.9 0.0 26 292-317 28-53 (250)
482 TIGR03819 heli_sec_ATPase heli 65.0 2.8 6.1E-05 49.5 0.0 26 293-318 178-203 (340)
483 COG0237 CoaE Dephospho-CoA kin 64.9 2.8 6.1E-05 45.9 0.0 49 296-346 5-59 (201)
484 PRK14259 phosphate ABC transpo 64.9 2.8 6.1E-05 47.6 0.0 27 291-317 37-63 (269)
485 COG4778 PhnL ABC-type phosphon 64.9 2.8 6.1E-05 44.5 0.0 28 292-319 36-64 (235)
486 PRK14526 adenylate kinase; Pro 64.8 2.8 6.2E-05 46.1 0.0 22 296-317 3-24 (211)
487 PRK13650 cbiO cobalt transport 64.8 2.9 6.2E-05 47.9 0.0 31 291-321 31-61 (279)
488 PRK14272 phosphate ABC transpo 64.7 2.9 6.2E-05 46.8 0.0 28 291-318 28-55 (252)
489 PRK00080 ruvB Holliday junctio 64.7 2.9 6.2E-05 49.0 0.0 27 292-318 50-76 (328)
490 PRK06936 type III secretion sy 64.7 2.9 6.2E-05 50.9 0.0 45 274-318 143-187 (439)
491 PRK09580 sufC cysteine desulfu 64.5 2.9 6.3E-05 46.6 0.0 27 291-317 25-51 (248)
492 PRK14955 DNA polymerase III su 64.5 2.9 6.3E-05 50.4 0.0 37 283-319 27-64 (397)
493 PRK14256 phosphate ABC transpo 64.5 2.9 6.3E-05 46.9 0.0 27 291-317 28-54 (252)
494 PRK14958 DNA polymerase III su 64.4 2.9 6.3E-05 52.1 0.0 53 264-320 8-65 (509)
495 PLN02348 phosphoribulokinase 64.4 2.9 6.4E-05 50.0 0.0 24 295-318 51-74 (395)
496 PRK10253 iron-enterobactin tra 64.3 3 6.4E-05 47.3 0.0 28 291-318 31-58 (265)
497 PF08433 KTI12: Chromatin asso 64.2 3 6.4E-05 47.8 0.0 24 296-319 4-27 (270)
498 PRK14722 flhF flagellar biosyn 64.2 3 6.4E-05 49.9 0.0 26 293-318 137-162 (374)
499 PRK13642 cbiO cobalt transport 64.2 3 6.5E-05 47.7 0.0 29 291-319 31-59 (277)
500 PRK14260 phosphate ABC transpo 64.2 3 6.5E-05 47.1 0.0 27 292-318 32-58 (259)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.4e-205 Score=1881.56 Aligned_cols=770 Identities=45% Similarity=0.735 Sum_probs=704.8
Q 000932 157 KKLRVWCRLEDGKWESGMIQSTSGD--EAFVLL--SNGNVVKVSTGELL--PANPDILEGVDDLIQLSYLNEPSVLNNIQ 230 (1221)
Q Consensus 157 ~~~~vW~~~~~~~~~~~~i~~~~~~--~~~v~~--~~g~~~~v~~~~~~--~~np~~~~~~~Dl~~L~~LnE~svL~~L~ 230 (1221)
.+..||.|+.+.+|..|.|.+..-. .++-.. .+|....|....+. ..+||.++++|||+.|+|||||+|||||+
T Consensus 8 ~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P~~~~vdDLt~LSyLNEpsVl~nL~ 87 (1463)
T COG5022 8 VGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLPKFDGVDDLTELSYLNEPAVLHNLE 87 (1463)
T ss_pred cCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCccccCchhhhhhhccCcHHHHHHHH
Confidence 4789999999999999999886433 232222 25655555555443 34477999999999999999999999999
Q 000932 231 YRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTE 308 (1221)
Q Consensus 231 ~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTe 308 (1221)
+||.+++||||.|.||||||||+++|||++++|+.|.++... +|||||||+.||+.|...++||||||||||||||||
T Consensus 88 kRY~n~~IYTYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESGAGKTe 167 (1463)
T COG5022 88 KRYNNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTE 167 (1463)
T ss_pred HHhhcCceeEEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCCCCchH
Confidence 999999999999999999999999999999999999998866 799999999999999999999999999999999999
Q 000932 309 TAKFAMQYLAALGGGSE----GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRV 384 (1221)
Q Consensus 309 t~K~il~yLa~~~~~~~----~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~tyLLEksRV 384 (1221)
+||.||+|||+++++++ .||.+||++||||||||||||+||||||||||||+|.||.+|.|+||+|++||||||||
T Consensus 168 ~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLLEKSRV 247 (1463)
T COG5022 168 NAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSRV 247 (1463)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhhhhhhh
Confidence 99999999999987654 89999999999999999999999999999999999999999999999999999999999
Q 000932 385 VQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAML 464 (1221)
Q Consensus 385 v~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~~iL 464 (1221)
|+|+.+|||||||||||+|+++..++.+++..+.+|+||++++|..++|+||+++|+.|+.||++|||+.++|.+||+||
T Consensus 248 V~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~iL 327 (1463)
T COG5022 248 VHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKIL 327 (1463)
T ss_pred ccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 99999999999999999998888888888899999999999999999999999999999999999999999999999999
Q 000932 465 AAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYG 544 (1221)
Q Consensus 465 aAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~i~~~l~~~qA~~~RDaLak~LY~ 544 (1221)
|||||||||+|..+ .++.+.+.+.+.++.||.|||||+..|.++|+.|.|++|+|.|.+++|..||..+||||||+||+
T Consensus 328 AaILhiGNIef~~~-r~g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~ 406 (1463)
T COG5022 328 AAILHIGNIEFKED-RNGAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYS 406 (1463)
T ss_pred HHHHhhcceeeeec-ccchhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHH
Confidence 99999999999964 34556778888999999999999999999999999999999999999999999999999999999
Q 000932 545 SLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVE 624 (1221)
Q Consensus 545 ~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~~iF~~eq~eY~~EgI~~~~i~ 624 (1221)
+||+|||++||.+|..+.. ..+|||||||||||+|+.|||||||||||||||||+||+|||++||++|.+|||+|++|+
T Consensus 407 ~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Id 485 (1463)
T COG5022 407 NLFDWIVDRINKSLDHSAA-ASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFID 485 (1463)
T ss_pred HHHHHHHHHHHhhccCccc-cccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 9999999999999987544 568999999999999999999999999999999999999999999999999999999999
Q 000932 625 FEDNEECLNLIEK-KPLGVLSLLDEESNFPKATDLTFANKLKQHLG--SNSCFKGER--GRAFSIRHYAGEVPYDTNGFL 699 (1221)
Q Consensus 625 f~dn~~~ldLie~-~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~--~~~~f~~~~--~~~F~I~HyaG~V~Y~~~gfl 699 (1221)
|.|||+||||||+ .|.|||++|||||.+|.|||++|..||.+.+. +++.|.++| ...|+|.||||+|+|+++|||
T Consensus 486 y~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~l 565 (1463)
T COG5022 486 YFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFL 565 (1463)
T ss_pred cccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchh
Confidence 9999999999997 47999999999999999999999999998876 567788765 568999999999999999999
Q 000932 700 EKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCI 778 (1221)
Q Consensus 700 eKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCI 778 (1221)
+||+|+++.++++||..|++++ ..+|.......+ ..+++||++.||.||.+||.+|++|+|||||||
T Consensus 566 dKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~~------------K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCI 633 (1463)
T COG5022 566 DKNKDPLNDDLLELLKASTNEFVSTLFDDEENIES------------KGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCI 633 (1463)
T ss_pred hhCcchhhHHHHHHHhhccchHHHHhhhhhhhccc------------cCCCCcHHHHHHHHHHHHHHHHHhcCCceeEee
Confidence 9999999999999999999986 567863321111 235689999999999999999999999999999
Q 000932 779 KPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLS------QDPLSISVAVLQQFN 852 (1221)
Q Consensus 779 kPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~------~d~~~~~~~IL~~l~ 852 (1221)
|||..|.|+.||..+|++|||||||||+|||+|+|||.|++|+||+.||++|.|..... .|.+.+|..||..+.
T Consensus 634 kPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~ 713 (1463)
T COG5022 634 KPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELV 713 (1463)
T ss_pred CCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999976542 356889999999999
Q 000932 853 VLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ-AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGK- 930 (1221)
Q Consensus 853 i~~~~yqvGkTKVFLR~g~l~~LE~~R~~~l~-Aai~IQa~~Rg~laRk~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~- 930 (1221)
++...||+|.|||||++|+++.||.+|...++ .++.||++|||+..|++|.+..+.+..+|...+|...|+.+..-..
T Consensus 714 id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~ 793 (1463)
T COG5022 714 IDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKW 793 (1463)
T ss_pred CChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHH
Confidence 99999999999999999999999999999886 6789999999999999999998888888888888888765543222
Q 000932 931 SCSAVVPEIR 940 (1221)
Q Consensus 931 ~AAi~IQ~~~ 940 (1221)
++++.+|..|
T Consensus 794 ~~~~~l~~~~ 803 (1463)
T COG5022 794 RLFIKLQPLL 803 (1463)
T ss_pred HhHHHhhHHh
Confidence 2566666666
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=5.9e-199 Score=1835.51 Aligned_cols=751 Identities=31% Similarity=0.509 Sum_probs=697.3
Q 000932 161 VWCRLEDGKWESGMIQ-STSGDEAFVLL---SNGNVVKVSTGELLPANPDI-LEGVDDLIQLSYLNEPSVLNNIQYRYSR 235 (1221)
Q Consensus 161 vW~~~~~~~~~~~~i~-~~~~~~~~v~~---~~g~~~~v~~~~~~~~np~~-~~~~~Dl~~L~~LnE~svL~~L~~Ry~~ 235 (1221)
.|.++++..|..|.|+ +..++.++|.. ++|++++|+.+++.++||+. .++++||+.|+|||||+|||||+.||.+
T Consensus 43 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~lnE~~vL~nL~~Ry~~ 122 (821)
T PTZ00014 43 AVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPHTNIPCVLDFLKHRYLK 122 (821)
T ss_pred CCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCCCCHHHHHHHHHHHHcC
Confidence 3457889999999999 88888888874 47999999999999999997 6789999999999999999999999999
Q 000932 236 DMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM---DSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF 312 (1221)
Q Consensus 236 ~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~---~~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~ 312 (1221)
++||||+|++|||||||+.+|+|++++++.|++... .|||||+||+.||+.|...++||||||||||||||||+||+
T Consensus 123 ~~IYTy~G~iLIavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~ 202 (821)
T PTZ00014 123 NQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVSGESGAGKTEATKQ 202 (821)
T ss_pred CCCeeeECCEEEEECCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHH
Confidence 999999999999999999999999999999998532 38999999999999999999999999999999999999999
Q 000932 313 AMQYLAALGGGS--EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAG 390 (1221)
Q Consensus 313 il~yLa~~~~~~--~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~tyLLEksRVv~q~~g 390 (1221)
+|+|||.++++. ..|+++|+++||||||||||||+||||||||||||+|+|+.+|.|+||+|++|||||||||+|++|
T Consensus 203 im~yla~~~~~~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~g 282 (821)
T PTZ00014 203 IMRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFLLEKSRVVTQEDD 282 (821)
T ss_pred HHHHHHHhccCCCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEEEEEeccCceeeecCCC
Confidence 999999987643 369999999999999999999999999999999999999999999999999999999999999999
Q 000932 391 ERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWL 470 (1221)
Q Consensus 391 ERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhL 470 (1221)
|||||||||||+|+++++|++|+|.++.+|+||+++ |..++++||+++|..++.||++|||+++++..||+||||||||
T Consensus 283 ERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~-~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~~~If~ilaaILhL 361 (821)
T PTZ00014 283 ERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINPK-CLDVPGIDDVKDFEEVMESFDSMGLSESQIEDIFSILSGVLLL 361 (821)
T ss_pred CCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCCC-CccCCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999965 8899999999999999999999999999999999999999999
Q 000932 471 GNISFQVIDN---ENHVEVIA--DEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGS 545 (1221)
Q Consensus 471 GNi~F~~~~~---~~~~~~~~--~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~i~~~l~~~qA~~~RDaLak~LY~~ 545 (1221)
|||+|...+. ++.+.+.+ .+.++.||.||||++++|.++|+++++.+|++.+.++++++||.++||||||+||++
T Consensus 362 GNi~F~~~~~~~~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~r 441 (821)
T PTZ00014 362 GNVEIEGKEEGGLTDAAAISDESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEK 441 (821)
T ss_pred cceeEeccccCCCCCceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHH
Confidence 9999986432 23344443 458999999999999999999999999999999999999999999999999999999
Q 000932 546 LFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEF 625 (1221)
Q Consensus 546 LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~~iF~~eq~eY~~EgI~~~~i~f 625 (1221)
||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||++|.+|||+|+.|+|
T Consensus 442 LF~wiV~~IN~~l~~~~-~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f 520 (821)
T PTZ00014 442 LFLWIIRNLNATIEPPG-GFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEY 520 (821)
T ss_pred HHHHHHHHHHHHhcCCc-ccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCC
Confidence 99999999999998643 24579999999999999999999999999999999999999999999999999999999999
Q 000932 626 EDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER---GRAFSIRHYAGEVPYDTNGFLEKN 702 (1221)
Q Consensus 626 ~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~~---~~~F~I~HyaG~V~Y~~~gfleKN 702 (1221)
.||++|||||+++|.|||++|||||++|++||.+|++||++++++|++|..++ ...|+|+||||+|+|+++|||+||
T Consensus 521 ~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN 600 (821)
T PTZ00014 521 TSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKN 600 (821)
T ss_pred CCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhc
Confidence 99999999999999999999999999999999999999999999999998664 479999999999999999999999
Q 000932 703 RDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPN 781 (1221)
Q Consensus 703 rD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN 781 (1221)
+|+|+++++++|++|+++++ .+|.......+ ...+..||+++|+.||+.||++|++|+||||||||||
T Consensus 601 kD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-----------~~~k~~tv~s~Fk~qL~~Lm~~L~~t~phfIRCIKPN 669 (821)
T PTZ00014 601 KDVLRPELVEVVKASPNPLVRDLFEGVEVEKG-----------KLAKGQLIGSQFLNQLDSLMSLINSTEPHFIRCIKPN 669 (821)
T ss_pred cccchHHHHHHHHhCccHHHHHHhcccccccc-----------cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCcC
Confidence 99999999999999999865 57754321110 1123479999999999999999999999999999999
Q 000932 782 SKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL--SQDPLSISVAVLQQFNVLPEMYQ 859 (1221)
Q Consensus 782 ~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~--~~d~~~~~~~IL~~l~i~~~~yq 859 (1221)
+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|.+.... ..|++..|+.||+.++++++.|+
T Consensus 670 ~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~ 749 (821)
T PTZ00014 670 ENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYA 749 (821)
T ss_pred cccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHcCCCcccEE
Confidence 9999999999999999999999999999999999999999999999999876543 35788999999999999999999
Q 000932 860 VGYTKLYLRSGQLAALEDRRKQVLQ----AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRR 924 (1221)
Q Consensus 860 vGkTKVFLR~g~l~~LE~~R~~~l~----Aai~IQa~~Rg~laRk~y~~lr~aai~IQs~~Rg~~aRr~ 924 (1221)
+|+||||||.+++..||..|..++. .+..||++||||++|++|++++.++++||+.||++++++.
T Consensus 750 iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 750 IGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred ecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998776653 5678999999999999999999999999999999998864
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=9.8e-188 Score=1716.33 Aligned_cols=677 Identities=80% Similarity=1.222 Sum_probs=642.4
Q 000932 202 PANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIAD 281 (1221)
Q Consensus 202 ~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~ 281 (1221)
|+||+.+++++||+.|++|||++|||+|+.||.+++||||+|+||||||||+.+|+|+++++..|+++...|||||+||+
T Consensus 1 ~~np~~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~y~~~~~~~PHifaiA~ 80 (677)
T cd01383 1 PANPDILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKKSNDSPHVYAIAD 80 (677)
T ss_pred CCCcccccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCCCCCHHHHHHhhCCCCCCCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999998888999999999
Q 000932 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1221)
Q Consensus 282 ~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1221)
+||+.|..+++||||||||||||||||++|++|+||+.+++++ +|+++|+++||||||||||||++|+||||||||++|
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~~-~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l 159 (677)
T cd01383 81 TAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGS-GIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEI 159 (677)
T ss_pred HHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEE
Confidence 9999999999999999999999999999999999999998765 899999999999999999999999999999999999
Q 000932 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1221)
Q Consensus 362 ~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1221)
+||.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+.+|.
T Consensus 160 ~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~ 239 (677)
T cd01383 160 HFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFH 239 (677)
T ss_pred EECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q 000932 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDS 521 (1221)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~ 521 (1221)
.++.||+.|||+++++..||+|||||||||||+|...++++.+++.+.+.++.||.||||++++|.++|+++++.++++.
T Consensus 240 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 319 (677)
T cd01383 240 TLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDN 319 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCce
Confidence 99999999999999999999999999999999998776666677888889999999999999999999999999999999
Q 000932 522 IAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHF 601 (1221)
Q Consensus 522 i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f 601 (1221)
+.++++++||.++||+|||+||++||+|||.+||.+|.++......+||||||||||+|+.|||||||||||||+||++|
T Consensus 320 ~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f 399 (677)
T cd01383 320 IVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHF 399 (677)
T ss_pred EeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999865556789999999999999999999999999999999999
Q 000932 602 NRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGERGRA 681 (1221)
Q Consensus 602 ~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~~~~~ 681 (1221)
|+++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||.+|++||.+|++||++++++|++|.++++..
T Consensus 400 ~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~ 479 (677)
T cd01383 400 NRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGERGGA 479 (677)
T ss_pred HHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887889
Q 000932 682 FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLF 761 (1221)
Q Consensus 682 F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~Fk~qL~ 761 (1221)
|+|+||||+|+|+++||++||+|.++.+++++|++|++++..+|.+.+...+.......+.++...+..||+++|+.||+
T Consensus 480 F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~~~fk~qL~ 559 (677)
T cd01383 480 FTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQLFASSMLIQSPVVGPLYVASAADSQKLSVGTKFKGQLF 559 (677)
T ss_pred eEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHHHHHhhhhccccccccccccccccccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888755432221100001111223456899999999999
Q 000932 762 KLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPL 841 (1221)
Q Consensus 762 ~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~~ 841 (1221)
.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|++||++|++......|++
T Consensus 560 ~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~ 639 (677)
T cd01383 560 KLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLENIASQDPL 639 (677)
T ss_pred HHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccccCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876667888
Q 000932 842 SISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1221)
Q Consensus 842 ~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R 879 (1221)
..|..||+.+++++++|++|+||||||.++++.||..|
T Consensus 640 ~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 640 SVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred HHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 89999999999999999999999999999999999876
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.6e-183 Score=1759.46 Aligned_cols=769 Identities=42% Similarity=0.701 Sum_probs=702.6
Q 000932 151 LGYFIKKKLRVWCRLEDGKWESGMIQSTSGDEAFVLLSNGNVVK-VSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNI 229 (1221)
Q Consensus 151 ~~~~~~~~~~vW~~~~~~~~~~~~i~~~~~~~~~v~~~~g~~~~-v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L 229 (1221)
.+|.- +.+||||+++++|+.|.|++..|++|+|.+.+|.+++ |+.++++|+|||.++.++||+.|+|||||||||||
T Consensus 25 ~~~d~--kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPPkfdk~eDMa~LT~lNeasVL~nL 102 (1930)
T KOG0161|consen 25 RPFDS--KKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPPKFDKVEDMAELTFLNEASVLHNL 102 (1930)
T ss_pred cchhh--cceeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCCCccccccHHHhcccChHHHHhhH
Confidence 34554 5799999999999999999998888999998877777 99999999999999999999999999999999999
Q 000932 230 QYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKT 307 (1221)
Q Consensus 230 ~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKT 307 (1221)
++||..++||||.|.+||+||||+++|||+++++.+|+++... ||||||||+.||+.|+.++.||||+|+||||||||
T Consensus 103 ~~RY~~~lIyTYSGLFcVviNPyk~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKT 182 (1930)
T KOG0161|consen 103 KQRYASDLIYTYSGLFCVVINPYKRLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKT 182 (1930)
T ss_pred HHHHHhChHHHcccceeEEecCCcCCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcc
Confidence 9999999999999999999999999999999999999998654 89999999999999999999999999999999999
Q 000932 308 ETAKFAMQYLAALGGGS-------EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLE 380 (1221)
Q Consensus 308 et~K~il~yLa~~~~~~-------~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~tyLLE 380 (1221)
|+||.||+|||.+++++ +.++++|+++||||||||||+|++|+|||||||||+|+|+.+|.|+||.|++||||
T Consensus 183 eNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLE 262 (1930)
T KOG0161|consen 183 ENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLE 262 (1930)
T ss_pred hhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHH
Confidence 99999999999998753 57899999999999999999999999999999999999999999999999999999
Q 000932 381 KSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKV-ANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQ 459 (1221)
Q Consensus 381 ksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~-~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~ 459 (1221)
||||++|+++||||||||||++|.++.++..|.|.+ +.+|.|+.++.. +++++||+++|..+..||++|||+++++.+
T Consensus 263 KsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~ 341 (1930)
T KOG0161|consen 263 KSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKIS 341 (1930)
T ss_pred HhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999999975 899999999876 999999999999999999999999999999
Q 000932 460 TFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALA 539 (1221)
Q Consensus 460 i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~i~~~l~~~qA~~~RDaLa 539 (1221)
||+|+|||||||||.|....+.+.+.+.+.+.++.||.||||+..+|.++|+++++++|++.+.+..+.+|+..+..+||
T Consensus 342 ~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alA 421 (1930)
T KOG0161|consen 342 IFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALA 421 (1930)
T ss_pred HHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHH
Confidence 99999999999999999876677889999999999999999999999999999999999999999999999999999999
Q 000932 540 KFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVD 619 (1221)
Q Consensus 540 k~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~~iF~~eq~eY~~EgI~ 619 (1221)
|++|++||.|||.+||.+|... .+..+|||||||+|||+|+.||||||||||+||+|||+||+|+|.+||++|.+|||.
T Consensus 422 k~lYerlF~wlV~riN~sld~~-~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIe 500 (1930)
T KOG0161|consen 422 KALYERLFGWLVKRINKSLDSK-QQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIE 500 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc-cccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCc
Confidence 9999999999999999999976 566789999999999999999999999999999999999999999999999999999
Q 000932 620 WTRVEFE-DNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHL-GSNSCFKGER----GRAFSIRHYAGEVPY 693 (1221)
Q Consensus 620 ~~~i~f~-dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~-~~~~~f~~~~----~~~F~I~HyaG~V~Y 693 (1221)
|++|||. |-++|+|||++ |+||||+|||||.+|++||.+|+.||...| ++||.|.+++ ..+|.|.||||+|.|
T Consensus 501 w~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y 579 (1930)
T KOG0161|consen 501 WDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDY 579 (1930)
T ss_pred eeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeecceecc
Confidence 9999997 99999999997 589999999999999999999999998776 8999998873 579999999999999
Q 000932 694 DTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQ-PGALDTQKQSVGTKFKGQLFKLMHQLENTR 771 (1221)
Q Consensus 694 ~~~gfleKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~-~g~~~~~~~tV~~~Fk~qL~~Lm~~L~~t~ 771 (1221)
+++|||+||+||++..++.+|..|++++ ..+|.+....... ...+.. ..+..+.+.||+..|+.||+.||.+|++|+
T Consensus 580 ~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~-~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~ 658 (1930)
T KOG0161|consen 580 NVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAA-AKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRSTH 658 (1930)
T ss_pred CccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchh-hhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999888774 6788762211100 000000 011123357899999999999999999999
Q 000932 772 PHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL--SQDPLSISVAVLQ 849 (1221)
Q Consensus 772 ~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~--~~d~~~~~~~IL~ 849 (1221)
|||||||.||..+.|+.+|.++|+.||||.||||.|||+|.|||.||+|.+|..||.++.+.... ..|.+..|..|+.
T Consensus 659 phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~ 738 (1930)
T KOG0161|consen 659 PHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILE 738 (1930)
T ss_pred CceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999944444333 3577889999999
Q 000932 850 QFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQA-IIRLQKCFRGYQARSRFRELC---NGVITLQSFARGENTRRRH 925 (1221)
Q Consensus 850 ~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~~~l~A-ai~IQa~~Rg~laRk~y~~lr---~aai~IQs~~Rg~~aRr~y 925 (1221)
.+.++...|++|.||||||.|+++.||.+|...+.. ++.+|+.+|||++|+.|.+.. .++.+||..+|.|+..+.+
T Consensus 739 ~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 739 ELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999988875 456788888888888776543 3566666666655544443
No 5
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.8e-182 Score=1670.65 Aligned_cols=660 Identities=44% Similarity=0.743 Sum_probs=622.4
Q 000932 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1221)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1221)
|||||+.|++|||++|||+|+.||.+++||||+|+||||||||+++|+|+++.+..|+++... |||||+||+.||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNM 80 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999987643 899999999999999
Q 000932 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFG 367 (1221)
Q Consensus 288 ~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g 367 (1221)
..+++||||||||||||||||++|++|+||+.+++....|+++|+++||||||||||||++||||||||||++|+|+.+|
T Consensus 81 ~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g 160 (671)
T cd01381 81 QREKKNQCIIISGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRG 160 (671)
T ss_pred HHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCC
Confidence 99999999999999999999999999999999988777899999999999999999999999999999999999999999
Q 000932 368 KICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEAL 447 (1221)
Q Consensus 368 ~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al 447 (1221)
+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|..++.||
T Consensus 161 ~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al 240 (671)
T cd01381 161 AIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAM 240 (671)
T ss_pred cEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q 000932 448 DIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN--ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKK 525 (1221)
Q Consensus 448 ~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~--~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~i~~~ 525 (1221)
+.|||+++++..||+|||||||||||+|...+. .+.+++.+.+.++.||.||||++++|.++||++++.++++.+.++
T Consensus 241 ~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~ 320 (671)
T cd01381 241 KVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGETVVTP 320 (671)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEeCCceEEec
Confidence 999999999999999999999999999986532 346788889999999999999999999999999999999999999
Q 000932 526 LTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHL 605 (1221)
Q Consensus 526 l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~~i 605 (1221)
++++||.++||||||+||++||+|||.+||.+|.........+||||||||||+|+.|||||||||||||+||++||+|+
T Consensus 321 ~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~v 400 (671)
T cd01381 321 LSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHI 400 (671)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976434456899999999999999999999999999999999999999
Q 000932 606 FKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER---GRAF 682 (1221)
Q Consensus 606 F~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~~---~~~F 682 (1221)
|+.||++|.+|||+|..|+|.||++|||||+++|.|||++|||||.+|++||.+|++||++++++|++|..++ +..|
T Consensus 401 f~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~F 480 (671)
T cd01381 401 FKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKPKSTQETQF 480 (671)
T ss_pred HHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccCCCCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997543 5789
Q 000932 683 SIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLF 761 (1221)
Q Consensus 683 ~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~Fk~qL~ 761 (1221)
+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|...... + .+...+..||+++|+.||+
T Consensus 481 ~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~-~---------~~~~~k~~tv~~~fk~qL~ 550 (671)
T cd01381 481 GINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEM-G---------AETRKKKPTLSSQFRRSLD 550 (671)
T ss_pred EEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccc-c---------ccccccCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875 577543210 0 0112345799999999999
Q 000932 762 KLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL---SQ 838 (1221)
Q Consensus 762 ~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~---~~ 838 (1221)
.||++|++|+||||||||||..+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++.... ..
T Consensus 551 ~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~ 630 (671)
T cd01381 551 LLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQD 630 (671)
T ss_pred HHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987653 34
Q 000932 839 DPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1221)
Q Consensus 839 d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R 879 (1221)
|++..|..|++.+.++.+.|++|+||||||.+++..||..|
T Consensus 631 ~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 631 CLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred cHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 66778999999988888999999999999999999999876
No 6
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=5.3e-182 Score=1673.75 Aligned_cols=672 Identities=47% Similarity=0.751 Sum_probs=623.0
Q 000932 205 PDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADT 282 (1221)
Q Consensus 205 p~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~ 282 (1221)
||.+++++||+.|++|||++|||+|+.||.+++||||+|+||||||||+++|+|++++++.|+++... |||||+||++
T Consensus 1 p~~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~ 80 (693)
T cd01377 1 PPKFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADN 80 (693)
T ss_pred CCcccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 67799999999999999999999999999999999999999999999999999999999999987644 8999999999
Q 000932 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS----------EGIEYEILQTNHILEAFGNAKTSRNDNS 352 (1221)
Q Consensus 283 Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~----------~~ie~~il~snpiLEAFGNAkT~rN~NS 352 (1221)
||+.|..+++||||||||||||||||++|+||+||+.++++. ..|+++|+++||||||||||||++||||
T Consensus 81 Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NS 160 (693)
T cd01377 81 AYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNS 160 (693)
T ss_pred HHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCc
Confidence 999999999999999999999999999999999999997642 3689999999999999999999999999
Q 000932 353 SRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVA-NDYNYLNQSECLTI 431 (1221)
Q Consensus 353 SRFGK~i~l~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~-~~y~yL~~~~~~~~ 431 (1221)
||||||++|+|+..|+|+||+|.+|||||||||.|++||||||||||||+|+++++|++|+|.+. .+|+||++++| .+
T Consensus 161 SRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~ 239 (693)
T cd01377 161 SRFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TI 239 (693)
T ss_pred cccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999875 89999999876 47
Q 000932 432 DGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALS 511 (1221)
Q Consensus 432 ~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~ 511 (1221)
+++||+++|+.++.||+.|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++|+
T Consensus 240 ~~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 319 (693)
T cd01377 240 PGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAAHLLGVNSADLLKALL 319 (693)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999976556678888999999999999999999999999
Q 000932 512 THKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCIN 591 (1221)
Q Consensus 512 ~r~i~~~~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcIN 591 (1221)
++++.++++.+.++++++||.++||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||
T Consensus 320 ~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~-~~~~~~IgiLDIfGFE~f~~NsfEQLcIN 398 (693)
T cd01377 320 HPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTK-QQRAYFIGVLDIAGFEIFDFNSFEQLCIN 398 (693)
T ss_pred ceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCceEEEEecccccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999875 34568999999999999999999999999
Q 000932 592 YANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 670 (1221)
Q Consensus 592 yaNErLQ~~f~~~iF~~eq~eY~~EgI~~~~i~f~-dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~ 670 (1221)
||||+||++|++++|+.||++|.+|||+|+.|+|. ||++|||||+++|.|||++|||||.+|++||.+|++||++++++
T Consensus 399 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~ 478 (693)
T cd01377 399 YTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLG 478 (693)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999995 99999999999999999999999999999999999999999999
Q 000932 671 NSCFKG--E--RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGAL 745 (1221)
Q Consensus 671 ~~~f~~--~--~~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~ 745 (1221)
|++|.. + .+..|+|+||||+|+|+++||++||+|.|+++++++|++|+++++ .+|.......+.. .........
T Consensus 479 ~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~-~~~~~~~~~ 557 (693)
T cd01377 479 KSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDG-GGGGGKKKK 557 (693)
T ss_pred CCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhccccccc-ccccCCCCc
Confidence 988732 1 257899999999999999999999999999999999999999865 5775433211000 000000111
Q 000932 746 DTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAG 825 (1221)
Q Consensus 746 ~~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~ 825 (1221)
..+..||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++
T Consensus 558 ~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~ 637 (693)
T cd01377 558 GGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQ 637 (693)
T ss_pred CCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHH
Confidence 22347999999999999999999999999999999999999999999999999999999999999999999999999999
Q 000932 826 RYGVLLSEKQL--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1221)
Q Consensus 826 RY~~L~~~~~~--~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R 879 (1221)
||++|++.... ..|++..|+.||+.+++++..|++|+||||||.+++..||.+|
T Consensus 638 rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 638 RYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 99999987642 3578889999999999999999999999999999999999876
No 7
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=5.8e-182 Score=1672.96 Aligned_cols=669 Identities=49% Similarity=0.820 Sum_probs=621.2
Q 000932 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1221)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1221)
|+|||+.|++|||++|||+|+.||.+++||||+|+||||||||+.+|+|+++++..|+++... |||||+||+.||+.|
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 80 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQM 80 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999987654 799999999999999
Q 000932 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS------EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1221)
Q Consensus 288 ~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~------~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1221)
+.+++||||||||||||||||++|+||+|||.++++. ..|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l 160 (691)
T cd01380 81 TRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQI 160 (691)
T ss_pred HhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEE
Confidence 9999999999999999999999999999999998643 4799999999999999999999999999999999999
Q 000932 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1221)
Q Consensus 362 ~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1221)
+||.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f~ 240 (691)
T cd01380 161 LFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFN 240 (691)
T ss_pred EECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q 000932 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDS 521 (1221)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~ 521 (1221)
.++.||+.|||+++++..||+|||||||||||+|...+++......+.+.++.||.||||++++|.++|+++++.+++|.
T Consensus 241 ~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 320 (691)
T cd01380 241 ATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPKDENLQIACELLGVDASDLRKWLVKRQIVTRSEK 320 (691)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccceecCChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCee
Confidence 99999999999999999999999999999999999765544333345678999999999999999999999999999999
Q 000932 522 IAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGK--QCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQ 599 (1221)
Q Consensus 522 i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~--~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~ 599 (1221)
+.++++++||.++||+|||+||++||+|||.+||.+|.+.. .....+||||||||||+|+.|||||||||||||+||+
T Consensus 321 i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~ 400 (691)
T cd01380 321 IVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQ 400 (691)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhHHHHH
Confidence 99999999999999999999999999999999999998752 3456799999999999999999999999999999999
Q 000932 600 HFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLG--SNSCFKGE 677 (1221)
Q Consensus 600 ~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~--~~~~f~~~ 677 (1221)
+||+|+|+.||++|.+|||+|+.|+|.||++|||||++ |.|||++|||||.+|++||.+|++||+++++ +|++|..+
T Consensus 401 ~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~ 479 (691)
T cd01380 401 QFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPHFEKP 479 (691)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCCccCC
Confidence 99999999999999999999999999999999999997 5999999999999999999999999999998 89999766
Q 000932 678 R--GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPK------PAASSQPGALDTQ 748 (1221)
Q Consensus 678 ~--~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~------~~~~~~~g~~~~~ 748 (1221)
+ ...|+|+||||+|+|+++||++||+|.|+++++++|++|+++++ .+|.......+.. ++.+...++...+
T Consensus 480 ~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (691)
T cd01380 480 RFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKRAKQH 559 (691)
T ss_pred CCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccccccC
Confidence 4 47899999999999999999999999999999999999999864 5775433211100 0000111122345
Q 000932 749 KQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYG 828 (1221)
Q Consensus 749 ~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~ 828 (1221)
..||+++|+.||+.||++|++|+||||||||||..+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||+
T Consensus 560 ~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~ry~ 639 (691)
T cd01380 560 KPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFAQRYR 639 (691)
T ss_pred CCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q 000932 829 VLLSEKQ-LSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1221)
Q Consensus 829 ~L~~~~~-~~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R 879 (1221)
+|++... ...|++..|+.||+.+.++...|++|+||||||.+++..||..|
T Consensus 640 ~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 640 VLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 9999875 35688899999999988888999999999999999999999876
No 8
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=4.4e-181 Score=1656.63 Aligned_cols=659 Identities=48% Similarity=0.812 Sum_probs=617.0
Q 000932 209 EGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAYN 285 (1221)
Q Consensus 209 ~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~-iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~ 285 (1221)
+||+||+.|++|||++|||+|+.||.+++||||+|+||||||||+++| ||+++++..|+++... |||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999 9999999999987654 8999999999999
Q 000932 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS----EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1221)
Q Consensus 286 ~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~----~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1221)
+|...++||||||||||||||||++|++|+||+.++++. ..|+++|+++||||||||||||++|+||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 999999999999999999999999999999999997642 3699999999999999999999999999999999999
Q 000932 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1221)
Q Consensus 362 ~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1221)
+|+.+|.|+||+|.+||||||||++|++||||||||||||+| +++++++|+|.++.+|+||++++|..++++||+++|+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g-~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~ 239 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAA-PPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYL 239 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcC-CHHHHHHcCCCChHhCccccCCCCccccccchHHHHH
Confidence 999999999999999999999999999999999999999999 8889999999999999999999999999999999999
Q 000932 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIA---DEAVTTAAMLMGCSSDELMLALSTHKIQAG 518 (1221)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~---~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~ 518 (1221)
.++.||+.|||+++++..||+|||||||||||+|...++.+.+.+.+ .+.++.||.||||++++|.++|+++++.++
T Consensus 240 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 319 (674)
T cd01384 240 ATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTP 319 (674)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 99999999999999999999999999999999998654434444433 478999999999999999999999999999
Q 000932 519 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQ 598 (1221)
Q Consensus 519 ~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ 598 (1221)
++.+.++++++||.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+||
T Consensus 320 ~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ 398 (674)
T cd01384 320 EEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDP-DSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQ 398 (674)
T ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeEEEEEecccccccCcCCHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999998743 34579999999999999999999999999999999
Q 000932 599 QHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER 678 (1221)
Q Consensus 599 ~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~~ 678 (1221)
++||+++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||.+|++||.+|++||++++++|++|..++
T Consensus 399 ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~ 478 (674)
T cd01384 399 QHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPK 478 (674)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998754
Q 000932 679 --GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTK 755 (1221)
Q Consensus 679 --~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~ 755 (1221)
+..|+|+||||+|+|+++||++||+|.|+++++++|++|+++++ .+|....... +...+..||+++
T Consensus 479 ~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~-----------~~~~k~~tv~~~ 547 (674)
T cd01384 479 LSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEET-----------SKSSKFSSIGSR 547 (674)
T ss_pred CCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhccccccc-----------ccccccccHHHH
Confidence 57999999999999999999999999999999999999999865 5775432110 012345799999
Q 000932 756 FKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQ 835 (1221)
Q Consensus 756 Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~ 835 (1221)
|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++...
T Consensus 548 fk~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~ 627 (674)
T cd01384 548 FKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVL 627 (674)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q 000932 836 L-SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQV 882 (1221)
Q Consensus 836 ~-~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~~~ 882 (1221)
. ..|.+..|+.||+.+++ +.|++|+||||||.+++..||..|...
T Consensus 628 ~~~~~~~~~~~~il~~~~~--~~~~~GktkVFlr~~~~~~LE~~R~~~ 673 (674)
T cd01384 628 KGSSDDKAACKKILDKMGL--KGYQIGKTKVFLRAGQMAELDARRTEV 673 (674)
T ss_pred cCCCcHHHHHHHHHHhCCC--CCEEecCeeEEEcCCHHHHHHHHHHhc
Confidence 3 35677899999998765 579999999999999999999999764
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1e-180 Score=1658.04 Aligned_cols=657 Identities=44% Similarity=0.734 Sum_probs=619.2
Q 000932 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1221)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1221)
||+||+.|++|||++|||+|+.||.+|+||||+|+||||||||+++|+|+++++..|+++... |||||+||+.||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m 80 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSM 80 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999988653 899999999999999
Q 000932 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS---EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFS 364 (1221)
Q Consensus 288 ~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~---~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~ 364 (1221)
+.+++||||||||||||||||++|++|+||+.++++. ..|+++|+++||||||||||||++|+||||||||++|+|+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~ 160 (674)
T cd01378 81 KSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFD 160 (674)
T ss_pred HHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEEC
Confidence 9999999999999999999999999999999998754 3589999999999999999999999999999999999999
Q 000932 365 AFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLM 444 (1221)
Q Consensus 365 ~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~ 444 (1221)
.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|..++
T Consensus 161 ~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~ 240 (674)
T cd01378 161 FKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQ 240 (674)
T ss_pred CCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q 000932 445 EALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGK----D 520 (1221)
Q Consensus 445 ~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~----e 520 (1221)
.||+.|||+++++..||+|||||||||||+|...++ +.+.+.+.+.++.||.||||++++|.++|+++++.+++ |
T Consensus 241 ~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~e 319 (674)
T cd01378 241 NAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISDKDVLDFAAYLLGVDPSELEKALTSRTIETGGGGRGE 319 (674)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCChHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCCce
Confidence 999999999999999999999999999999986543 33678888999999999999999999999999999998 9
Q 000932 521 SIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQH 600 (1221)
Q Consensus 521 ~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~ 600 (1221)
.+.++++++||.++||+|||+||++||+|||.+||.+|.+.......+||||||||||+|+.|||||||||||||+||++
T Consensus 320 ~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~ 399 (674)
T cd01378 320 VYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQI 399 (674)
T ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999975445578999999999999999999999999999999999
Q 000932 601 FNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEK-KPLGVLSLLDEESNFP-KATDLTFANKLKQHLGSNSCFKGE- 677 (1221)
Q Consensus 601 f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~-~p~Gil~lLDeE~~~p-~~tD~~f~~kL~~~~~~~~~f~~~- 677 (1221)
||+|+|+.||++|.+|||+|+.|+|.||++|||||++ +|.|||++|||||.+| ++||++|++||++++++|++|..+
T Consensus 400 f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~~~~~~ 479 (674)
T cd01378 400 FIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPHSDHFS 479 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCCCCCCC
Confidence 9999999999999999999999999999999999999 8999999999999999 999999999999999999886543
Q 000932 678 -RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTK 755 (1221)
Q Consensus 678 -~~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~ 755 (1221)
.+..|+|+||||+|+|+++|||+||+|.++++++++|++|+++++ .+|.+.....+ ..+..||+++
T Consensus 480 ~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~------------~~~~~tv~~~ 547 (674)
T cd01378 480 SGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS------------KKRPTTAGFK 547 (674)
T ss_pred CCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc------------cCCCCcHHHH
Confidence 367999999999999999999999999999999999999999865 57754221100 1134699999
Q 000932 756 FKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQ 835 (1221)
Q Consensus 756 Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~ 835 (1221)
|+.||+.||++|++|+||||||||||..+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++||++|++...
T Consensus 548 fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~ 627 (674)
T cd01378 548 IKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTW 627 (674)
T ss_pred HHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998753
Q 000932 836 L--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSG-QLAALEDRR 879 (1221)
Q Consensus 836 ~--~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g-~l~~LE~~R 879 (1221)
. ..|++..|+.||+.++++++.|++|+||||||.| ++..||.+|
T Consensus 628 ~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 628 PTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred cccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 2 4578899999999999999999999999999997 799999876
No 10
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=3.5e-180 Score=1651.72 Aligned_cols=668 Identities=41% Similarity=0.727 Sum_probs=615.2
Q 000932 209 EGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNE 286 (1221)
Q Consensus 209 ~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~ 286 (1221)
+|||||+.|++|||++|||+|+.||.+|+||||+|+||||||||+.+|+|+++.+..|+++... |||||+||++||+.
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~ 80 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAK 80 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999987654 89999999999999
Q 000932 287 MMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG-SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSA 365 (1221)
Q Consensus 287 m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~-~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~ 365 (1221)
|+.+++||||||||||||||||++|++|+||+.++++ +..|+++|+++||||||||||||++|+||||||||++|+|+
T Consensus 81 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~- 159 (677)
T cd01387 81 MLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE- 159 (677)
T ss_pred HHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-
Confidence 9999999999999999999999999999999998743 34689999999999999999999999999999999999995
Q 000932 366 FGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLME 445 (1221)
Q Consensus 366 ~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~ 445 (1221)
+|.|+||+|++|||||||||.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..+++.+|+++|..++.
T Consensus 160 ~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~ 239 (677)
T cd01387 160 GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRLLA 239 (677)
T ss_pred CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999988889999999999999
Q 000932 446 ALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN--ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIA 523 (1221)
Q Consensus 446 Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~--~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~i~ 523 (1221)
||+.|||+++++..||+|||||||||||+|...+. .+.+.+.+++.++.||.||||++++|.++||++++.+++|.+.
T Consensus 240 al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~ 319 (677)
T cd01387 240 AMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTETRREKIF 319 (677)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCceEe
Confidence 99999999999999999999999999999986532 2346788888999999999999999999999999999999999
Q 000932 524 KKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNR 603 (1221)
Q Consensus 524 ~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~ 603 (1221)
++++++||.++||+|||+||++||+|||.+||.+|.+. ....+||||||||||+|+.|||||||||||||+||++||+
T Consensus 320 ~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~--~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~ 397 (677)
T cd01387 320 TPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT--QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNK 397 (677)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999863 3457999999999999999999999999999999999999
Q 000932 604 HLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER--GRA 681 (1221)
Q Consensus 604 ~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~~--~~~ 681 (1221)
++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||||||.+|++||.+|++|++.++++|++|..++ ...
T Consensus 398 ~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~ 477 (677)
T cd01387 398 IVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPKMPLPE 477 (677)
T ss_pred HHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCCCCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997664 468
Q 000932 682 FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQL 760 (1221)
Q Consensus 682 F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~Fk~qL 760 (1221)
|+|+||||+|+|+++|||+||+|.++++++++|.+|+++++ .+|.......+.++......|+...+..||+++|+.||
T Consensus 478 F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~~f~~sL 557 (677)
T cd01387 478 FTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAAKFQQSL 557 (677)
T ss_pred eEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999875 46654321111111100111222334579999999999
Q 000932 761 FKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDP 840 (1221)
Q Consensus 761 ~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~ 840 (1221)
+.||++|++|+||||||||||..+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++||++|++......++
T Consensus 558 ~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~ 637 (677)
T cd01387 558 LDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALKLARPAP 637 (677)
T ss_pred HHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCcccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875443344
Q 000932 841 LSI-SVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1221)
Q Consensus 841 ~~~-~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R 879 (1221)
... +..+++.++++...|++|+||||||.+++..||..|
T Consensus 638 ~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 638 GDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred HHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 334 467788888888999999999999999999999876
No 11
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=3.8e-179 Score=1645.88 Aligned_cols=669 Identities=41% Similarity=0.679 Sum_probs=616.0
Q 000932 208 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKV---MDSPHVYAIADTAY 284 (1221)
Q Consensus 208 ~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~---~~~PHiyavA~~Ay 284 (1221)
..++|||+.|++|||++|||+|+.||.+++||||+|+||||||||+++|+|+++++..|+++. ..|||||+||++||
T Consensus 6 ~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay 85 (692)
T cd01385 6 QREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAY 85 (692)
T ss_pred cCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999998865 23899999999999
Q 000932 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG---SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1221)
Q Consensus 285 ~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~---~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1221)
+.|..+++||||||||||||||||++|++|+||+.+++. ..+|+++|+++||||||||||||++|+||||||||++|
T Consensus 86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l 165 (692)
T cd01385 86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQV 165 (692)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEE
Confidence 999999999999999999999999999999999998753 24699999999999999999999999999999999999
Q 000932 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1221)
Q Consensus 362 ~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1221)
+|+.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++++|.+..+|+||++++|...+++||+.+|.
T Consensus 166 ~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~ 245 (692)
T cd01385 166 NYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFE 245 (692)
T ss_pred EECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888899999999887778999999999
Q 000932 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN---ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 518 (1221)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~---~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~ 518 (1221)
.++.||+.|||+++++..||+|||||||||||+|...++ ++.+.+.+.+.+..||.||||++++|.++||++++.++
T Consensus 246 ~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 325 (692)
T cd01385 246 RLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTV 325 (692)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeC
Confidence 999999999999999999999999999999999986532 34577888899999999999999999999999999999
Q 000932 519 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQ--CTGRSINILDIYGFESFKK-NSFEQFCINYANE 595 (1221)
Q Consensus 519 ~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~--~~~~~IgILDI~GFE~f~~-NsfEQLcINyaNE 595 (1221)
+|.++++++++||.++||+|||+||++||+|||.+||.+|.+... ....+||||||||||+|+. |||||||||||||
T Consensus 326 ~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNE 405 (692)
T cd01385 326 NETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANE 405 (692)
T ss_pred CCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999986432 2457999999999999999 9999999999999
Q 000932 596 RLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFK 675 (1221)
Q Consensus 596 rLQ~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~ 675 (1221)
+||++||+++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||.+|++||++++++|++|.
T Consensus 406 kLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~~~~~ 485 (692)
T cd01385 406 QLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDNKYYE 485 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q 000932 676 GER--GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSV 752 (1221)
Q Consensus 676 ~~~--~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV 752 (1221)
+++ ...|+|+||||+|+|+++|||+||+|.|+++++++|++|+++++ .+|............ .+.........||
T Consensus 486 ~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~--~~~~~~~~~~~tV 563 (692)
T cd01385 486 GPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAV--LRAAFRAMAAPSV 563 (692)
T ss_pred CCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccccccc--ccccccCccCCcH
Confidence 653 57899999999999999999999999999999999999999875 577542211100000 0000011223799
Q 000932 753 GTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLS 832 (1221)
Q Consensus 753 ~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~ 832 (1221)
+++|+.||++||++|++|+||||||||||..+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++||++|+|
T Consensus 564 ~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L~~ 643 (692)
T cd01385 564 SAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRILLP 643 (692)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q 000932 833 EKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 880 (1221)
Q Consensus 833 ~~~~~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~ 880 (1221)
.... ..++.|..||+.+++++..|++|+||||||.++...||....
T Consensus 644 ~~~~--~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 644 KGAQ--SCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred cccc--chHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 6432 234568999999999999999999999999999999998654
No 12
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.4e-178 Score=1646.10 Aligned_cols=664 Identities=39% Similarity=0.664 Sum_probs=613.6
Q 000932 208 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAY 284 (1221)
Q Consensus 208 ~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~-iY~~~~~~~y~~~~~~--~PHiyavA~~Ay 284 (1221)
.++||||+.|++|||++|||+|+.||.+++||||+|+||||||||+++| +|+++++..|+++... |||||+||+.||
T Consensus 3 ~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 82 (717)
T cd01382 3 KKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAY 82 (717)
T ss_pred CCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999998 9999999999987654 799999999999
Q 000932 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFS 364 (1221)
Q Consensus 285 ~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~ 364 (1221)
++|..+++||||||||||||||||++|++|+||+.++++...|+++|+++||||||||||||++|+||||||||++|+|+
T Consensus 83 ~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~ 162 (717)
T cd01382 83 RDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFN 162 (717)
T ss_pred HHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEEC
Confidence 99999999999999999999999999999999999987767899999999999999999999999999999999999999
Q 000932 365 AFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSE----------------- 427 (1221)
Q Consensus 365 ~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~----------------- 427 (1221)
.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||+++.
T Consensus 163 ~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~~ 242 (717)
T cd01382 163 EKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQNR 242 (717)
T ss_pred CCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999752
Q 000932 428 ---------CLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNEN-H--VEVIADEAVTTA 495 (1221)
Q Consensus 428 ---------~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~-~--~~~~~~~~l~~a 495 (1221)
|..++++||+.+|+.++.||++|||+++++..||+|||||||||||+|...++.+ . +...+.+.+..|
T Consensus 243 ~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~ 322 (717)
T cd01382 243 KSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYC 322 (717)
T ss_pred cccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecCCCHHHHHHH
Confidence 2245778999999999999999999999999999999999999999998654322 2 233456889999
Q 000932 496 AMLMGCSSDELMLALSTHKIQ-----AGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSIN 570 (1221)
Q Consensus 496 A~LLGv~~~~L~~~L~~r~i~-----~~~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~Ig 570 (1221)
|.||||++++|.++|++|++. ++++.+.++++++||.++||+|||+||++||+|||.+||.+|.... ...+||
T Consensus 323 a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~--~~~~Ig 400 (717)
T cd01382 323 AELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET--SSNFIG 400 (717)
T ss_pred HHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCcEEE
Confidence 999999999999999999988 6789999999999999999999999999999999999999997643 457999
Q 000932 571 ILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEES 650 (1221)
Q Consensus 571 ILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~ 650 (1221)
||||||||+|+.|||||||||||||+||++|++++|..||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||
T Consensus 401 iLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~ 480 (717)
T cd01382 401 VLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEEN 480 (717)
T ss_pred EEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q 000932 651 NFPKATDLTFANKLKQHLGSNSCFKGER------------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCT 718 (1221)
Q Consensus 651 ~~p~~tD~~f~~kL~~~~~~~~~f~~~~------------~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~ 718 (1221)
.+|++||.+|++||++.+++|++|..++ ...|+|+||||+|+|+++|||+||+|.|+++++++|++|+
T Consensus 481 ~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~ 560 (717)
T cd01382 481 RLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESK 560 (717)
T ss_pred cCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCc
Confidence 9999999999999999999888775432 2579999999999999999999999999999999999999
Q 000932 719 CQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQ 797 (1221)
Q Consensus 719 ~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~Q 797 (1221)
++++ .+|.......... .+. ...+..||+++|+.||+.||++|++|+||||||||||..+.|+.||..+|++|
T Consensus 561 n~~i~~lf~~~~~~~~~~----~~~--~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~Q 634 (717)
T cd01382 561 DKFLRSLFESSTNNNDTK----QKA--GKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQ 634 (717)
T ss_pred hHHHHHHhcccccccccc----ccc--cCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHH
Confidence 9875 5775432111000 000 12245799999999999999999999999999999999999999999999999
Q 000932 798 FRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALED 877 (1221)
Q Consensus 798 Lr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~ 877 (1221)
|||+||||+|||+|.|||+|++|.+|++||++|++......|++..|+.||+.++++++.|++|+||||||.|+++.||.
T Consensus 635 Lr~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~ 714 (717)
T cd01382 635 LQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLVRLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQ 714 (717)
T ss_pred HHhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHH
Confidence 99999999999999999999999999999999998776667889999999999999999999999999999999999987
Q 000932 878 RR 879 (1221)
Q Consensus 878 ~R 879 (1221)
..
T Consensus 715 ~~ 716 (717)
T cd01382 715 IM 716 (717)
T ss_pred Hh
Confidence 53
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=5.1e-176 Score=1623.07 Aligned_cols=665 Identities=54% Similarity=0.870 Sum_probs=626.9
Q 000932 204 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIAD 281 (1221)
Q Consensus 204 np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~ 281 (1221)
||+..++++||+.|++|||++||++|+.||.+++||||+|++|||||||+++|+|+++++..|+++... |||||+||+
T Consensus 1 np~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~ 80 (677)
T smart00242 1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIAD 80 (677)
T ss_pred CCcccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHH
Confidence 688899999999999999999999999999999999999999999999999999999999999987643 799999999
Q 000932 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG---SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKL 358 (1221)
Q Consensus 282 ~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~---~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~ 358 (1221)
+||+.|+.+++||||||||||||||||++|++|+||+.++++ ...|+++|+++||||||||||||++|+||||||||
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~ 160 (677)
T smart00242 81 NAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKF 160 (677)
T ss_pred HHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchhee
Confidence 999999999999999999999999999999999999999865 35799999999999999999999999999999999
Q 000932 359 IEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQ 438 (1221)
Q Consensus 359 i~l~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~ 438 (1221)
++|+|+.+|+|+||+|.+||||||||+.|++||||||||||||+|++++++++|+|.++.+|+||++++|..++++||++
T Consensus 161 ~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~ 240 (677)
T smart00242 161 IEIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAE 240 (677)
T ss_pred EEEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q 000932 439 NFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENH-VEVIADEAVTTAAMLMGCSSDELMLALSTHKIQA 517 (1221)
Q Consensus 439 ~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~-~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~ 517 (1221)
+|+.++.||+.|||+++++..||+|||||||||||+|...++++. ..+.+.+.++.||.||||+.++|.++|+++++.+
T Consensus 241 ~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 320 (677)
T smart00242 241 EFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELENAAELLGVDPEELEKALTKRKIKT 320 (677)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEe
Confidence 999999999999999999999999999999999999987654332 2477888999999999999999999999999999
Q 000932 518 GKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERL 597 (1221)
Q Consensus 518 ~~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErL 597 (1221)
++|.+.+++++++|.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+|
T Consensus 321 ~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkL 399 (677)
T smart00242 321 GGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKD-GSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKL 399 (677)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEEEEEecccccccccCCHHHHHhHhhHHHH
Confidence 999999999999999999999999999999999999999998743 4568999999999999999999999999999999
Q 000932 598 QQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGE 677 (1221)
Q Consensus 598 Q~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~ 677 (1221)
|++|++++|+.||++|++|||+|+.|+|.||++|||||+++|.|||++|||||.+|++||.+|++||++++++|++|..+
T Consensus 400 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~ 479 (677)
T smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKP 479 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q 000932 678 ---RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVG 753 (1221)
Q Consensus 678 ---~~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~ 753 (1221)
.+..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|....... +...+..||+
T Consensus 480 ~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~-----------~~~~~~~tv~ 548 (677)
T smart00242 480 RKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNA-----------GSKKRFRTVG 548 (677)
T ss_pred CCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccc-----------cccCCCCcHH
Confidence 367899999999999999999999999999999999999999865 5775432110 0123457999
Q 000932 754 TKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE 833 (1221)
Q Consensus 754 ~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~ 833 (1221)
++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||++||+|.|||+|++|.+|+.||++|++.
T Consensus 549 ~~fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~ 628 (677)
T smart00242 549 SQFKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPD 628 (677)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q 000932 834 KQL--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 880 (1221)
Q Consensus 834 ~~~--~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~ 880 (1221)
... ..|+++.|+.||+.++++...|++|+||||||.+++..||..|+
T Consensus 629 ~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 629 TWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred cccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 544 24578999999999999999999999999999999999999874
No 14
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=7.2e-176 Score=1505.67 Aligned_cols=719 Identities=38% Similarity=0.643 Sum_probs=659.0
Q 000932 209 EGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNE 286 (1221)
Q Consensus 209 ~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~ 286 (1221)
-||+|++-|+.++|++++.||+.||..+.||||+|+|||+||||+.++||++++|+.|++...- |||+||||+.||+.
T Consensus 8 ~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYrs 87 (1001)
T KOG0164|consen 8 VGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAIADAAYRS 87 (1001)
T ss_pred cCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHhHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999998864 79999999999999
Q 000932 287 MMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS-----EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1221)
Q Consensus 287 m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~-----~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1221)
|.+..+||||+|||||||||||++|+||+|+|++.+.+ ..+.+.+|+|||||||||||||.||||||||||||.|
T Consensus 88 lk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMDI 167 (1001)
T KOG0164|consen 88 LKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMDI 167 (1001)
T ss_pred HHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcceee
Confidence 99999999999999999999999999999999997643 3567789999999999999999999999999999999
Q 000932 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNL-KVANDYNYLNQSECLTIDGVDDAQNF 440 (1221)
Q Consensus 362 ~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L-~~~~~y~yL~~~~~~~~~~~dD~~~f 440 (1221)
.||-.|.-+|+.|..|||||||||.|.+||||||||||||.|+++.+..+|+| +++..|+||+++ |..+.+++|+.+|
T Consensus 168 nFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~df 246 (1001)
T KOG0164|consen 168 NFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDASDF 246 (1001)
T ss_pred eccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999 579999999998 8889999999999
Q 000932 441 HNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKD 520 (1221)
Q Consensus 441 ~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e 520 (1221)
..+.+||.+|||+++|++++|+|+|||||||||.|...+ +..-+++...+..+|+||++..++|.++|+.|++.+++|
T Consensus 247 k~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~~~l~~~aell~v~~del~~aL~~Rtvaa~~e 324 (1001)
T KOG0164|consen 247 KAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNGAQLKYIAELLSVTGDELERALTSRTVAAGGE 324 (1001)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999998643 333344557899999999999999999999999999999
Q 000932 521 SIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQ----CTGRSINILDIYGFESFKKNSFEQFCINYANER 596 (1221)
Q Consensus 521 ~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~----~~~~~IgILDI~GFE~f~~NsfEQLcINyaNEr 596 (1221)
.+.+++|++||.++||||||++|+|||.|||.+||.++.+... .....||+|||||||+|+.|||||||||||||+
T Consensus 325 ~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcINYCNEK 404 (1001)
T KOG0164|consen 325 IVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCINYCNEK 404 (1001)
T ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987421 123689999999999999999999999999999
Q 000932 597 LQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPK-ATDLTFANKLKQHLGSNSCFK 675 (1221)
Q Consensus 597 LQ~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~-~tD~~f~~kL~~~~~~~~~f~ 675 (1221)
|||.|++-+++.|||||..|||+|+.|+|-+|.-++||+|.+..|||+||||||..|+ .||.+|+++|.+++++|++|.
T Consensus 405 LQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~H~Hy~ 484 (1001)
T KOG0164|consen 405 LQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKKHPHYT 484 (1001)
T ss_pred HHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhhCCcch
Confidence 9999999999999999999999999999999999999999999999999999999886 699999999999999999996
Q 000932 676 GER---------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPGAL 745 (1221)
Q Consensus 676 ~~~---------~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~g~~ 745 (1221)
+.. -.+|.|.||||+|+|+|.||++||+|.|-.|+..+|..|++++ ..+|......... .
T Consensus 485 sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~----------~ 554 (1001)
T KOG0164|consen 485 SRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAE----------V 554 (1001)
T ss_pred hhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHh----------h
Confidence 421 2689999999999999999999999999999999999999986 4577532111000 0
Q 000932 746 DTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAG 825 (1221)
Q Consensus 746 ~~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~ 825 (1221)
..+-.|++++|+.++..||..|.+.+|+||||||||+.+.|+.||...|.+|.+|+|+||-+|++|+||.+|.+|+.|+.
T Consensus 555 tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~ 634 (1001)
T KOG0164|consen 555 TKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLL 634 (1001)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHH
Confidence 12336899999999999999999999999999999999999999999999999999999999999999999999999999
Q 000932 826 RYGVLLSEKQL---SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRS-GQLAALEDRRKQVLQ-AIIRLQKCFRGYQARS 900 (1221)
Q Consensus 826 RY~~L~~~~~~---~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~-g~l~~LE~~R~~~l~-Aai~IQa~~Rg~laRk 900 (1221)
||+++.+..++ ..+.++.|..+++..++. .++.+|+||||+|. ..+..||++|..++. -++.||++||||++|.
T Consensus 635 RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~-~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ 713 (1001)
T KOG0164|consen 635 RYKMICESTWPNWRGGSDKDGVKVLLEHLGLA-GDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQ 713 (1001)
T ss_pred HHHhhCcccCCCCCCCCchhHHHHHHHHhccc-hhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988776 344567788888888876 88999999999997 578999999988875 4678999999999999
Q 000932 901 RFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1221)
Q Consensus 901 ~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~AAi~IQ~~~~~~~~aai~IQs~~Rg~laRR~~~ 964 (1221)
+|++++++++.|+ |||.+..+ ..+..||..+||+.++|.|.
T Consensus 714 ry~rmka~~~ii~-wyR~~K~k----------------------s~v~el~~~~rg~k~~r~yg 754 (1001)
T KOG0164|consen 714 RYRRMKASATIIR-WYRRYKLK----------------------SYVQELQRRFRGAKQMRDYG 754 (1001)
T ss_pred HHHHHHHHHHHHH-HHHHHHHH----------------------HHHHHHHHHHHhhhhccccC
Confidence 9999999999998 88843322 34567888888888888877
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=6.1e-175 Score=1597.44 Aligned_cols=635 Identities=40% Similarity=0.670 Sum_probs=592.3
Q 000932 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1221)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1221)
++|||+.|++|||++|||+|+.||.+++||||+|+||||||||+++|+|+++++..|+++... |||||+||+.||+.|
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSL 80 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999876543 899999999999999
Q 000932 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG-SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAF 366 (1221)
Q Consensus 288 ~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~-~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~ 366 (1221)
...++||||||||||||||||++|++|+||+.++++ ...|+++|+++||||||||||||++|+||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~ 160 (653)
T cd01379 81 VTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRS 160 (653)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCC
Confidence 999999999999999999999999999999998754 3479999999999999999999999999999999999999999
Q 000932 367 GKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLK-ERLNLKVANDYNYLNQSECLTIDGVD----DAQNFH 441 (1221)
Q Consensus 367 g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r-~~l~L~~~~~y~yL~~~~~~~~~~~d----D~~~f~ 441 (1221)
|+|+||+|++||||||||++|++||||||||||||+|++++++ +.|+|.+...|+||++++|..+++++ |+.+|.
T Consensus 161 g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~ 240 (653)
T cd01379 161 GAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYKDQFE 240 (653)
T ss_pred CcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHHHHHH
Confidence 9999999999999999999999999999999999999997766 78999988999999999887666654 578899
Q 000932 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN---ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 518 (1221)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~---~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~ 518 (1221)
.++.||++|||+++++..||+|||||||||||+|...++ .+.+.+.+.+.++.||.||||+.++|.++|+++++.++
T Consensus 241 ~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ 320 (653)
T cd01379 241 QIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSHCVVTR 320 (653)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 999999999999999999999999999999999986543 23567788899999999999999999999999999999
Q 000932 519 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQ----CTGRSINILDIYGFESFKKNSFEQFCINYAN 594 (1221)
Q Consensus 519 ~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~----~~~~~IgILDI~GFE~f~~NsfEQLcINyaN 594 (1221)
++.+.++++++||.++||||||+||++||+|||.+||.+|.+... ....+||||||||||+|+.||||||||||||
T Consensus 321 ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaN 400 (653)
T cd01379 321 GETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCINIAN 400 (653)
T ss_pred CceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHHHHhhhhH
Confidence 999999999999999999999999999999999999999987432 2357999999999999999999999999999
Q 000932 595 ERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCF 674 (1221)
Q Consensus 595 ErLQ~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f 674 (1221)
|+||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||.+|++||+.++++ +.|
T Consensus 401 EkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~~~~-~~~ 479 (653)
T cd01379 401 EQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDNLKS-KFF 479 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988764 445
Q 000932 675 KGE--RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFASKMLKPSPKPAASSQPGALDTQKQSV 752 (1221)
Q Consensus 675 ~~~--~~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV 752 (1221)
..+ ....|+|+||||+|+|+++||++||+|.|+.+++++|++| +||
T Consensus 480 ~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S--------------------------------~tv 527 (653)
T cd01379 480 WRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS--------------------------------QTV 527 (653)
T ss_pred cCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC--------------------------------cHH
Confidence 443 2568999999999999999999999999999999998655 368
Q 000932 753 GTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLS 832 (1221)
Q Consensus 753 ~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~ 832 (1221)
+++|+.||.+||++|.+|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++
T Consensus 528 ~~~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~ 607 (653)
T cd01379 528 ASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAY 607 (653)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q 000932 833 EKQL-SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1221)
Q Consensus 833 ~~~~-~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R 879 (1221)
.... ..+.+..|..||+.+++ ++|++|+||||||.++...||.+|
T Consensus 608 ~~~~~~~~~~~~~~~il~~~~~--~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 608 RFEEEPVSSPESCALILEKAKL--DNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred ccccccCChHHHHHHHHHhCCC--CCEEecceEEEEecCHHHHHHhcC
Confidence 6432 34567899999998766 579999999999999999999865
No 16
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=4e-174 Score=1610.25 Aligned_cols=669 Identities=50% Similarity=0.815 Sum_probs=618.0
Q 000932 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1221)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1221)
+++||+.|++|||++|||+|+.||.+++||||+|++|||||||+++|+|+++++..|+++... |||||+||++||+.|
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m 80 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNM 80 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999987644 799999999999999
Q 000932 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG-SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAF 366 (1221)
Q Consensus 288 ~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~-~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~ 366 (1221)
+.+++||||||||||||||||++|++|+||+.++++ ...|+++|+++||||||||||||++|+||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~ 160 (679)
T cd00124 81 LRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDET 160 (679)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCC
Confidence 999999999999999999999999999999999875 3579999999999999999999999999999999999999999
Q 000932 367 GKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEA 446 (1221)
Q Consensus 367 g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~A 446 (1221)
|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|+++.+|+||++++|..++++||+++|..++.|
T Consensus 161 g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~a 240 (679)
T cd00124 161 GKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEA 240 (679)
T ss_pred CcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q 000932 447 LDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENH--VEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAK 524 (1221)
Q Consensus 447 l~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~--~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~i~~ 524 (1221)
|+.|||+++++..||+|||||||||||+|...++++. +.+.+.+.++.||.||||+.++|.++|+++++.++++.+.+
T Consensus 241 l~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~ 320 (679)
T cd00124 241 LKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEVITI 320 (679)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCceEEe
Confidence 9999999999999999999999999999987654432 67888899999999999999999999999999999999999
Q 000932 525 KLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRH 604 (1221)
Q Consensus 525 ~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~~ 604 (1221)
+++++||.++||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||+||++|+++
T Consensus 321 ~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~ 399 (679)
T cd00124 321 PLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPK-DGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQH 399 (679)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999874 234679999999999999999999999999999999999999
Q 000932 605 LFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGE---RGRA 681 (1221)
Q Consensus 605 iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~---~~~~ 681 (1221)
+|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||.+|++||.+|++||++++++|++|... .+..
T Consensus 400 ~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~~ 479 (679)
T cd00124 400 VFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAKKNAPTE 479 (679)
T ss_pred HHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999886322 3579
Q 000932 682 FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQL 760 (1221)
Q Consensus 682 F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~Fk~qL 760 (1221)
|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|.......+..+......+....+..||+++|+.||
T Consensus 480 F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~qL 559 (679)
T cd00124 480 FTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGSQFRTSL 559 (679)
T ss_pred eEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999865 57754321111000000011112335689999999999
Q 000932 761 FKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQD- 839 (1221)
Q Consensus 761 ~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d- 839 (1221)
+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++......+
T Consensus 560 ~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~~~~~~~ 639 (679)
T cd00124 560 DALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDLLEKVSL 639 (679)
T ss_pred HHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCcccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987654322
Q 000932 840 PLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1221)
Q Consensus 840 ~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R 879 (1221)
....|..+|+.++++...|++|+||||||.+++..||.+|
T Consensus 640 ~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 640 TKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred cHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 2233889999999999999999999999999999999865
No 17
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=5.9e-173 Score=1598.41 Aligned_cols=666 Identities=30% Similarity=0.474 Sum_probs=590.0
Q 000932 211 VDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMM 288 (1221)
Q Consensus 211 ~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~ 288 (1221)
||||+.|++|||++|||+|+.||.+++||||+|++|||||||+.+|+|+++++..|+++... |||||+||+.||+.|.
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~ 81 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALL 81 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999987654 8999999999999999
Q 000932 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSE--GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAF 366 (1221)
Q Consensus 289 ~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~~--~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~ 366 (1221)
.+++||||||||||||||||++|++|+|||.++++.+ ...++|+++||||||||||||++||||||||||++|+|+.+
T Consensus 82 ~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~ 161 (767)
T cd01386 82 ETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDGRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQT 161 (767)
T ss_pred HcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCcccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCC
Confidence 9999999999999999999999999999999986432 22467999999999999999999999999999999999999
Q 000932 367 GKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSE-CLTIDGVDDAQNFHNLME 445 (1221)
Q Consensus 367 g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~-~~~~~~~dD~~~f~~l~~ 445 (1221)
|.|+||+|++|||||||||.|++||||||||||||+|++++++++|+|.+...+.++.... +...++++|+++|..++.
T Consensus 162 g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~~~~ 241 (767)
T cd01386 162 GQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQ 241 (767)
T ss_pred CcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998754433333222 234567899999999999
Q 000932 446 ALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKD----- 520 (1221)
Q Consensus 446 Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e----- 520 (1221)
||++|||+++++..||+|||||||||||+|... .+.+.+.+.+.++.||.||||+.++|.++|+++++.++.+
T Consensus 242 Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~--~~~~~~~~~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~~~~ 319 (767)
T cd01386 242 AMEVLGISEGEQRAIWRVLAAIYHLGAAGATKV--AGRKQFARPEWAQKAAELLGCPLEELSSATFKHTLRGGINQMTTG 319 (767)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhccCceeeec--CCccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEeecceeeecc
Confidence 999999999999999999999999999999852 2346778888999999999999999999999988776643
Q 000932 521 --------SIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKK------NSFE 586 (1221)
Q Consensus 521 --------~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~------NsfE 586 (1221)
.+..++++.||.++||||||+||++||+|||.+||.+|.... ....+||||||||||+|+. ||||
T Consensus 320 ~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IgiLDIfGFE~f~~n~~~~~NsfE 398 (767)
T cd01386 320 PQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSH-HSIASIMLVDTPGFQNPASQGKDRAATFE 398 (767)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcEEEEEecccccccccccccCCCCHH
Confidence 233456788999999999999999999999999999998753 3457999999999999984 8999
Q 000932 587 QFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIEKKP--------------LGVLSLLDEESN 651 (1221)
Q Consensus 587 QLcINyaNErLQ~~f~~~iF~~eq~eY~~EgI~~~~i~f-~dn~~~ldLie~~p--------------~Gil~lLDeE~~ 651 (1221)
|||||||||+|||+||+++|+.||++|.+|||+|+.+++ .||++||+||+++| .|||++|||||+
T Consensus 399 QLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~ 478 (767)
T cd01386 399 ELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEAL 478 (767)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhc
Confidence 999999999999999999999999999999999987655 69999999999865 599999999999
Q 000932 652 FPKATDLTFANKLKQHLGSNSCFKG--------ERGRAFSIRHYAGE--VPYDTNGFLEKNRDPL-QTDIIQLLSSCTCQ 720 (1221)
Q Consensus 652 ~p~~tD~~f~~kL~~~~~~~~~f~~--------~~~~~F~I~HyaG~--V~Y~~~gfleKNrD~l-~~d~~~ll~~S~~~ 720 (1221)
+|++||.+|++||++++++|++|.. .....|+|+||||+ |+|+++|||+||+|.+ ..+++++|++|+++
T Consensus 479 ~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~~S~~~ 558 (767)
T cd01386 479 VPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQDSKRE 558 (767)
T ss_pred CCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHHhCCcH
Confidence 9999999999999999988887754 12468999999995 9999999999999965 68999999999988
Q 000932 721 V-LQLFASKMLK------P-------SPKP---AAS-SQ---PGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIK 779 (1221)
Q Consensus 721 l-~~lf~~~~~~------~-------~~~~---~~~-~~---~g~~~~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIk 779 (1221)
+ ..+|...... . +..+ ..+ ++ .++...++.||+++|+.||+.||++|++|+||||||||
T Consensus 559 ~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phfIRCIK 638 (767)
T cd01386 559 EINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHFVHCYL 638 (767)
T ss_pred HHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCeeEEEeC
Confidence 5 5688532110 0 0000 000 00 00112345799999999999999999999999999999
Q 000932 780 PNSKQL----------------------PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL- 836 (1221)
Q Consensus 780 PN~~~~----------------------p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~- 836 (1221)
||+.+. |+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||++|.+....
T Consensus 639 PN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~~~~~~ 718 (767)
T cd01386 639 PQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAEGLTKK 718 (767)
T ss_pred ccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhChhhccc
Confidence 999873 789999999999999999999999999999999999999999999876432
Q 000932 837 ------SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1221)
Q Consensus 837 ------~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R 879 (1221)
..|++..|..||+.++++++.|++|+||||||.+++..||..|
T Consensus 719 ~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 719 VGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 3578899999999999999999999999999999999999876
No 18
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=7.3e-171 Score=1462.49 Aligned_cols=706 Identities=39% Similarity=0.660 Sum_probs=657.1
Q 000932 207 ILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAY 284 (1221)
Q Consensus 207 ~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay 284 (1221)
...|||||+-|+-++|.+|..||+.||..+.||||+|+|||+||||+.+|+|+++.|..|+++... ||||||+|+++|
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladnmY 95 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADNMY 95 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHHHH
Confidence 356899999999999999999999999999999999999999999999999999999999998764 899999999999
Q 000932 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS---EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1221)
Q Consensus 285 ~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~---~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1221)
++|..+.+|||||||||||||||+++|.||+|++.++++. +.|.+-||++||+|||||||||+||+||||||||++|
T Consensus 96 ~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei 175 (1106)
T KOG0162|consen 96 RNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEI 175 (1106)
T ss_pred HHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEEE
Confidence 9999999999999999999999999999999999998654 3577889999999999999999999999999999999
Q 000932 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1221)
Q Consensus 362 ~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1221)
+|+..|.-+|++|.+|||||+|||.|.+|||||||||||+.||+.+.|..|++..++.|.||+.++|+.++++||..+|+
T Consensus 176 ~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdfq 255 (1106)
T KOG0162|consen 176 QFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDFQ 255 (1106)
T ss_pred EecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q 000932 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG--- 518 (1221)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~--- 518 (1221)
.++.||+++||.++||+.||++||+|||||||.|.+ .++.+.+.+.+.++-.|.||||+...|.+.||.|.|...
T Consensus 256 ~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~E--e~~~a~V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G~ 333 (1106)
T KOG0162|consen 256 ETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIE--EGNYAAVSDKSVLEFPAYLLGIDSARLEEKLTSRIMESKWGG 333 (1106)
T ss_pred HHHHHheeccCChHHHHHHHHHHHHHHhccceeEEe--eCCcceeccchHHHhHHHHhcCCHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999997 345677778888999999999999999999999998763
Q 000932 519 -KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERL 597 (1221)
Q Consensus 519 -~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErL 597 (1221)
.+.+..+|+++||...||||||+||.+||||||++||.++.....+...+||||||||||+|++||||||||||.||+|
T Consensus 334 kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKL 413 (1106)
T KOG0162|consen 334 KREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFVNEKL 413 (1106)
T ss_pred cceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999865555668999999999999999999999999999999
Q 000932 598 QQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEK-KPLGVLSLLDEESNFP----KATDLTFANKLKQHLGSNS 672 (1221)
Q Consensus 598 Q~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~-~p~Gil~lLDeE~~~p----~~tD~~f~~kL~~~~~~~~ 672 (1221)
||.|++-+++.|||||.+|||.|++|+|-||.-++||||. +|.||+++|||-|... .|-|.+|+.+|...+++||
T Consensus 414 QQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~p 493 (1106)
T KOG0162|consen 414 QQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHP 493 (1106)
T ss_pred HHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999984 6899999999999753 4679999999999999999
Q 000932 673 CFKGERGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQS 751 (1221)
Q Consensus 673 ~f~~~~~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~g~~~~~~~t 751 (1221)
+|.. +...|+|+||||+|+||++||.+||||.|..|++.|+.+|.++|. .+|......++.+ +-+|
T Consensus 494 hF~~-~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~dskr------------RP~T 560 (1106)
T KOG0162|consen 494 HFES-RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDADSKR------------RPPT 560 (1106)
T ss_pred cccc-ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhcccccC------------CCCC
Confidence 9975 367899999999999999999999999999999999999999875 4675443222211 2267
Q 000932 752 VGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLL 831 (1221)
Q Consensus 752 V~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~ 831 (1221)
.+.+.+.|-++|+++|..|.||||||||||..|.|+.||...|++|+.|+|+-|-|||+|+||.+|..|+.|+.||.+|.
T Consensus 561 ag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyails 640 (1106)
T KOG0162|consen 561 AGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILS 640 (1106)
T ss_pred chhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q 000932 832 SEKQL--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRS-GQLAALEDRRKQVLQA-IIRLQKCFRGYQARSRFRELCN 907 (1221)
Q Consensus 832 ~~~~~--~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~-g~l~~LE~~R~~~l~A-ai~IQa~~Rg~laRk~y~~lr~ 907 (1221)
|..++ ..|.+.+|..||+..+++.++||+|.||||++. ..+..||++|++.+.. |.+||++||.|.+|++|.++|.
T Consensus 641 p~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~re 720 (1106)
T KOG0162|consen 641 PQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMRE 720 (1106)
T ss_pred cccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98876 468899999999999999999999999999997 5789999999999875 6799999999999999999998
Q 000932 908 GVITLQSFARGENTRRRHASLGK 930 (1221)
Q Consensus 908 aai~IQs~~Rg~~aRr~y~~lr~ 930 (1221)
-+..| .-|...||+|--+|.
T Consensus 721 e~t~l---l~gKKeRRr~Si~R~ 740 (1106)
T KOG0162|consen 721 EATKL---LLGKKERRRYSINRN 740 (1106)
T ss_pred HHHHH---hcchHHHHHHHHHHH
Confidence 76654 357778887766544
No 19
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=9.5e-171 Score=1460.95 Aligned_cols=776 Identities=38% Similarity=0.621 Sum_probs=695.6
Q 000932 158 KLRVWCRLEDGKWESGMIQSTSGDEAFVLLS--NGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSR 235 (1221)
Q Consensus 158 ~~~vW~~~~~~~~~~~~i~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~ 235 (1221)
+..||++|+.++|..|.|+.+..++.+++.- .|.+++---+|+.++..+...+|||-|.|-||||+.+|+|++.||.+
T Consensus 4 gr~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD~~k~veDNC~Lm~LNEATlL~Nik~RY~k 83 (1259)
T KOG0163|consen 4 GRLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEEDSPKDVEDNCELMHLNEATLLNNIKLRYYK 83 (1259)
T ss_pred CceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccccccccccccceeeccHHHHhhhhhhhhcc
Confidence 5679999999999999999999998888643 67788878889999987778899999999999999999999999999
Q 000932 236 DMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF 312 (1221)
Q Consensus 236 ~~iYT~~G~iLiaVNP~k~l~-iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~ 312 (1221)
|.||||+.+||||||||+.++ +|+++.|..|++++.+ ||||||||+.||+.|..-+.+||||+||||||||||++|.
T Consensus 84 ~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~ 163 (1259)
T KOG0163|consen 84 DKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTESTKA 163 (1259)
T ss_pred CchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchhHHH
Confidence 999999999999999999997 9999999999999876 7999999999999999999999999999999999999999
Q 000932 313 AMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGER 392 (1221)
Q Consensus 313 il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~tyLLEksRVv~q~~gER 392 (1221)
+|+||+.--|+.+.|+.+||.+||||||||||||+||+||||||||++|||+.+|.++|+-|.+||||||||+.|+.+||
T Consensus 164 vLrYLces~gsag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC~Qaa~ER 243 (1259)
T KOG0163|consen 164 VLRYLCESWGSAGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRICRQAAEER 243 (1259)
T ss_pred HHHHHHhccCCCCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHHHhhhccc
Confidence 99999987776779999999999999999999999999999999999999999999999999999999999999999999
Q 000932 393 SYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLT---------------------------IDGVDDAQNFHNLME 445 (1221)
Q Consensus 393 nfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~---------------------------~~~~dD~~~f~~l~~ 445 (1221)
||||||||++|++++++++|.|..+++|+||+.+ |.. -+-+||..+|..+..
T Consensus 244 NYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG-~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~dF~rl~~ 322 (1259)
T KOG0163|consen 244 NYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRG-CTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQDFHRLEK 322 (1259)
T ss_pred chhHHHHHHcCCCHHHHHHhccCCchhhhHHhcc-hhhhccCcchhhcCcccccCccccccCcccCcccccHHHHHHHHH
Confidence 9999999999999999999999999999999854 321 123689999999999
Q 000932 446 ALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNE--NHVEVI--ADEAVTTAAMLMGCSSDELMLALSTHKIQAG--- 518 (1221)
Q Consensus 446 Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~--~~~~~~--~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~--- 518 (1221)
||+.+|++++|...||+++|||||||||+|+...++ +.|.+. +...|..+|+|||++.++|...||.|.+.+.
T Consensus 323 Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG 402 (1259)
T KOG0163|consen 323 ALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGG 402 (1259)
T ss_pred HHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999976532 345544 4567999999999999999999999998763
Q 000932 519 --KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANER 596 (1221)
Q Consensus 519 --~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNEr 596 (1221)
|..|.+||.+.+|..+||||||++|++||||||.+||+++-.. .+..+||||||.|||.|.+|||||||||||||+
T Consensus 403 ~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe--~St~fiGVLDiAGFEyf~~NSFEQFCINyCNEK 480 (1259)
T KOG0163|consen 403 FKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE--KSTFFIGVLDIAGFEYFAVNSFEQFCINYCNEK 480 (1259)
T ss_pred ccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc--cccceeEEEeeccceeeecccHHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999999753 356799999999999999999999999999999
Q 000932 597 LQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKG 676 (1221)
Q Consensus 597 LQ~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~ 676 (1221)
||+|||+.|++.||+.|..||+....|.|.||++||+|||.+..|||.|||||..+|+.++..|....++.+..|-+...
T Consensus 481 LQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~ 560 (1259)
T KOG0163|consen 481 LQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDL 560 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887766544322
Q 000932 677 ER------------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPG 743 (1221)
Q Consensus 677 ~~------------~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~g 743 (1221)
|| ...|.|+||||.|.|++.-|+|||.|.|+..+-.|+..|++++ +.||.+...+. .++. .|
T Consensus 561 PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~-a~~~----~g 635 (1259)
T KOG0163|consen 561 PRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTS-AKQT----RG 635 (1259)
T ss_pred CchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCc-cccc----cc
Confidence 21 3579999999999999999999999999999999999999986 67886543211 1111 11
Q 000932 744 ALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEF 823 (1221)
Q Consensus 744 ~~~~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF 823 (1221)
..+..||+.+|+.||..||+.|++|..|||||||||..+.+..||...++.||.|+|+..++++.+.|||.|..|.+.
T Consensus 636 --kL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dL 713 (1259)
T KOG0163|consen 636 --KLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADL 713 (1259)
T ss_pred --eeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHH
Confidence 345579999999999999999999999999999999999999999999999999999999999999999999999999
Q 000932 824 AGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQAIIRLQKCFRGYQARSRFR 903 (1221)
Q Consensus 824 ~~RY~~L~~~~~~~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~~~l~Aai~IQa~~Rg~laRk~y~ 903 (1221)
+.-|.-.+|+.....||+-.|.++.+.++++..+|++|.|||||+.|.++...+..+..-...+.|-+.+--|+.|.+|+
T Consensus 714 YamYkk~lPpkLarLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~kVn~WLv~sRWk 793 (1259)
T KOG0163|consen 714 YAMYKKVLPPKLARLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAKVNKWLVRSRWK 793 (1259)
T ss_pred HHHHHhhCCHhhhcCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999888877666656666666677888888887
Q 000932 904 ELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1221)
Q Consensus 904 ~lr~aai~IQs~~Rg~~aRr~y~~lr~~AAi~IQ~~~~~~~~aai~IQs~~Rg~laRR~~~ 964 (1221)
+...++..+-. ++.+ +.-...+++++|+.+||||+|++++
T Consensus 794 k~q~~a~sVIK-------------LkNk--------I~yRae~v~k~Q~~~Rg~L~rkr~~ 833 (1259)
T KOG0163|consen 794 KSQYGALSVIK-------------LKNK--------IIYRAECVLKAQRIARGYLARKRHR 833 (1259)
T ss_pred Hhhhhhhheee-------------hhhH--------HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 76544332211 1110 0111246889999999999999887
No 20
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.2e-169 Score=1534.04 Aligned_cols=740 Identities=52% Similarity=0.847 Sum_probs=693.3
Q 000932 203 ANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYR-QKVMDSPHVYAIA 280 (1221)
Q Consensus 203 ~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~-iY~~~~~~~y~-~~~~~~PHiyavA 280 (1221)
.||+. .++|||+.|+|||||+|||||+.||..+.||||.|.+|||||||+.+| +|+++.|..|+ ......||+|++|
T Consensus 3 ~~~~~-~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~~~~~~l~ph~favA 81 (862)
T KOG0160|consen 3 PNPPP-MGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQAIQGELSPHLFAVA 81 (862)
T ss_pred CCCCC-CCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhcccccccCcchhhHH
Confidence 35555 799999999999999999999999999999999999999999999999 99999999999 2222369999999
Q 000932 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG--SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKL 358 (1221)
Q Consensus 281 ~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~--~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~ 358 (1221)
+.||+.|..+..||+||||||||||||+++|++|+||+.++++ ...||++||.+|||+||||||+|++|+||||||||
T Consensus 82 ~~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~ 161 (862)
T KOG0160|consen 82 EEAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGSVEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKV 161 (862)
T ss_pred HHHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhccchhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhH
Confidence 9999999999999999999999999999999999999999988 67899999999999999999999999999999999
Q 000932 359 IEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQ 438 (1221)
Q Consensus 359 i~l~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~ 438 (1221)
++|+|+..|+|.||+|.|||||||||+.++++|||||||||+|+|.+ +++++|+|..+..|.|++|++|..+++++|+.
T Consensus 162 iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~-~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~ 240 (862)
T KOG0160|consen 162 IEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAP-EELEKLKLGTLRRFSYLNQSACVLISGVSDAE 240 (862)
T ss_pred HHHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCc-hhhhccCcCccccceecccccchhhcccccHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q 000932 439 NFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 518 (1221)
Q Consensus 439 ~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~ 518 (1221)
+|..++.||..+||+.++|..||++||||||||||+|...++++.....++ .+..+|.||||+.+.|...|+.|.+.++
T Consensus 241 e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~-~~~~~a~Llg~~~~~l~~~L~~r~i~~~ 319 (862)
T KOG0160|consen 241 EFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD-HLWTAAELLGCDEEALEQWLSKRKILTA 319 (862)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch-HHHHHHHHhCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999997666544444444 8899999999999999999999999999
Q 000932 519 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQ 598 (1221)
Q Consensus 519 ~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ 598 (1221)
++.|.++++..||...||++||.||++||+|+|..||.+|..+......+||||||||||.|+.|||||||||||||+||
T Consensus 320 ~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkLq 399 (862)
T KOG0160|consen 320 RESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKLQ 399 (862)
T ss_pred cceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHhh
Confidence 99999999999999999999999999999999999999999876666789999999999999999999999999999999
Q 000932 599 QHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER 678 (1221)
Q Consensus 599 ~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~~ 678 (1221)
|+||+|+|+.||++|..|||+|+.|+|.||++|+++|++ |.|+++||||||++|.++|.+|..||.+++..|++|.+++
T Consensus 400 q~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kpr 478 (862)
T KOG0160|consen 400 QQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKPR 478 (862)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCCC
Confidence 999999999999999999999999999999999999999 8999999999999999999999999999999999999886
Q 000932 679 G--RAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKF 756 (1221)
Q Consensus 679 ~--~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~~lf~~~~~~~~~~~~~~~~~g~~~~~~~tV~~~F 756 (1221)
. ..|+|.||||+|+|++.|||+||+|++++++++++..|++.+...+......++. ..+++.||+++|
T Consensus 479 ~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~----------~~~~~~tv~s~f 548 (862)
T KOG0160|consen 479 LSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSS----------AKSKRSTVGSQF 548 (862)
T ss_pred CCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchh----------hhhhcccHHHHH
Confidence 4 5899999999999999999999999999999999999999986655442211111 255778999999
Q 000932 757 KGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL 836 (1221)
Q Consensus 757 k~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~ 836 (1221)
+.+|..||.+|++|+||||||||||..+.|..||..+|++|||||||||++||++.|||.|.+|.||+.||++|+| ...
T Consensus 549 k~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~ 627 (862)
T KOG0160|consen 549 KLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS 627 (862)
T ss_pred HHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 555
Q 000932 837 SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQA-IIRLQKCFRGYQARSRFRELCNGVITLQSF 915 (1221)
Q Consensus 837 ~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~~~l~A-ai~IQa~~Rg~laRk~y~~lr~aai~IQs~ 915 (1221)
..|++..|..+|+.++++ .||+|+||||++.|+++.|+.+|..++.+ ++.||+.+|+|+.|++|..+|++++.||+.
T Consensus 628 ~~~~~~~~~~il~~~~~~--~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~ 705 (862)
T KOG0160|consen 628 ASDDLSLCKVILEKLGLE--LYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAY 705 (862)
T ss_pred cccchHHHHHHHHHhchh--ceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 677799999999998886 99999999999999999999999988875 567999999999999999999999999999
Q 000932 916 ARGENTRRRHASLGKSCSAVVPEIR---------DEQLREIICLQSAIRGWLVRK 961 (1221)
Q Consensus 916 ~Rg~~aRr~y~~lr~~AAi~IQ~~~---------~~~~~aai~IQs~~Rg~laRR 961 (1221)
+||+++|+ ..++..||+.||+.| +..+.+++.||+.+|++++|+
T Consensus 706 ~rG~~~r~--~~~~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 706 SRGVLARR--ETEREAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred hhHHHHHH--hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 333444899999988 345678899999999999988
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=1.4e-168 Score=1575.13 Aligned_cols=658 Identities=50% Similarity=0.837 Sum_probs=577.0
Q 000932 211 VDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMM 288 (1221)
Q Consensus 211 ~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~ 288 (1221)
||||+.|++|||++|||+|+.||.++.||||+|++|||||||+++|+|+++++..|+++... |||||++|++||+.|+
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~ 80 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQML 80 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhccccccc
Confidence 79999999999999999999999999999999999999999999999999999999987544 7999999999999999
Q 000932 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSE-----GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHF 363 (1221)
Q Consensus 289 ~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~~-----~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f 363 (1221)
++++||||||||||||||||++|++|+||+.++.+.. .++++|+++||||||||||||++|+||||||||++|+|
T Consensus 81 ~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f 160 (689)
T PF00063_consen 81 RTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQF 160 (689)
T ss_dssp HHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEE
T ss_pred ccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEe
Confidence 9999999999999999999999999999999987653 79999999999999999999999999999999999999
Q 000932 364 SAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNL 443 (1221)
Q Consensus 364 ~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l 443 (1221)
+.+|.|+||+|++||||||||+.+++||||||||||||+|+++++|++|+|.++.+|+||++++|..+++.||+.+|..+
T Consensus 161 ~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~l 240 (689)
T PF00063_consen 161 DDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQEL 240 (689)
T ss_dssp ETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHHH
T ss_pred cccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q 000932 444 MEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIA 523 (1221)
Q Consensus 444 ~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~~~~e~i~ 523 (1221)
+.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||++++.+++|.++
T Consensus 241 ~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~ 320 (689)
T PF00063_consen 241 KDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSEELQKAAELLGVDSEELEKALTTRTIKVGGETVT 320 (689)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEEE
T ss_pred hhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHHHHHHhhhhcCCCHHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999987766667888888999999999999999999999999999999999
Q 000932 524 KKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNR 603 (1221)
Q Consensus 524 ~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~ 603 (1221)
++++++||.++||+|||+||++||+|||.+||.+|++.......+||||||||||+|..|||||||||||||+||++|++
T Consensus 321 ~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~ 400 (689)
T PF00063_consen 321 KPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQ 400 (689)
T ss_dssp EE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccceeee
Confidence 99999999999999999999999999999999999986645678999999999999999999999999999999999999
Q 000932 604 HLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHL-GSNSCFKGE---- 677 (1221)
Q Consensus 604 ~iF~~eq~eY~~EgI~~~~i~f-~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~-~~~~~f~~~---- 677 (1221)
++|+.||++|.+|||+|..++| .||++|||||+++|.|||++|||||.+|++||.+|+++|.+.+ +++++|.++
T Consensus 401 ~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~~~~~ 480 (689)
T PF00063_consen 401 HIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKPRFSR 480 (689)
T ss_dssp HHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECTSSST
T ss_pred ecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccccccc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999998 888888654
Q 000932 678 --RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSP----------KPAASSQPGA 744 (1221)
Q Consensus 678 --~~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~----------~~~~~~~~g~ 744 (1221)
....|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|+........ ....+....+
T Consensus 481 ~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (689)
T PF00063_consen 481 STSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQSRSSG 560 (689)
T ss_dssp SSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTSSCCC
T ss_pred ccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccccccc
Confidence 368999999999999999999999999999999999999999864 688665421000 0000011112
Q 000932 745 LDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFA 824 (1221)
Q Consensus 745 ~~~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~ 824 (1221)
...+..||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||+|+||+|+++|++.|||+|++|.+|+
T Consensus 561 ~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~~eF~ 640 (689)
T PF00063_consen 561 SKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTFDEFL 640 (689)
T ss_dssp GGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEHHHHH
T ss_pred cccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecchhhhh
Confidence 23445899999999999999999999999999999999999999999999999999999999999999999999999999
Q 000932 825 GRYGVLLSEKQL-----SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLR 868 (1221)
Q Consensus 825 ~RY~~L~~~~~~-----~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR 868 (1221)
+||++|++.... ..++++.|+.||+.++++...|++|+||||||
T Consensus 641 ~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 641 RRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 999999998764 35788999999999999999999999999996
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=1.3e-111 Score=1052.62 Aligned_cols=719 Identities=37% Similarity=0.546 Sum_probs=613.9
Q 000932 204 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIA 280 (1221)
Q Consensus 204 np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiaVNP~k~l~-iY~~~~~~~y~~~~~~--~PHiyavA 280 (1221)
.+....+++||++|.+++|+.+++||..||..+.||||+|.+|++||||+.+| +|.++++..|.++... +||||++|
T Consensus 56 ~~~~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~a 135 (1062)
T KOG4229|consen 56 HRPQVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIA 135 (1062)
T ss_pred cccccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhh
Confidence 44567899999999999999999999999999999999999999999999999 9999999999965544 79999999
Q 000932 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG-GGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLI 359 (1221)
Q Consensus 281 ~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~-~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i 359 (1221)
+.||+.|++...||||+|||||||||||+|+++++||+.++ +....++..|+.+||+|||||||+|.+|||||||||||
T Consensus 136 d~~y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i 215 (1062)
T KOG4229|consen 136 DLAYQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYI 215 (1062)
T ss_pred hhHHHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheE
Confidence 99999999999999999999999999999999999999999 66678999999999999999999999999999999999
Q 000932 360 EIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTI-DGVDDAQ 438 (1221)
Q Consensus 360 ~l~f~~~g~i~Ga~i~tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~-~~~dD~~ 438 (1221)
+++|..+|.|-||+|..|||||+||+.|+.+||||||||++++|++..++..+.|..+.+|.||+++.+..+ ++.++..
T Consensus 216 ~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~ 295 (1062)
T KOG4229|consen 216 KVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVA 295 (1062)
T ss_pred EeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q 000932 439 NFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN--ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQ 516 (1221)
Q Consensus 439 ~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~--~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~r~i~ 516 (1221)
+|..+..||..+||...++.+||++++||||+|||+|..... .+...+.+...++.+|.||+++.+.|.++++.++..
T Consensus 296 ~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~~~~ 375 (1062)
T KOG4229|consen 296 QFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEEAVERVACLLLIKEKLLQEALTARVNV 375 (1062)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccchHHHHHHHHhhcCHHHhhhhhccccee
Confidence 999999999999999999999999999999999999986543 234677888999999999999999999999999999
Q 000932 517 AGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQC-TGRSINILDIYGFESFKKNSFEQFCINYANE 595 (1221)
Q Consensus 517 ~~~e~i~~~l~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~-~~~~IgILDI~GFE~f~~NsfEQLcINyaNE 595 (1221)
..+|.+..+++.++|.+.||++||.||++||.|||.+||..+...... ...+||||||||||+|..|+|||||||||||
T Consensus 376 ~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~Ane 455 (1062)
T KOG4229|consen 376 TRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLANE 455 (1062)
T ss_pred eehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999864321 3579999999999999999999999999999
Q 000932 596 RLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFK 675 (1221)
Q Consensus 596 rLQ~~f~~~iF~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~lLDeE~~~p~~tD~~f~~kL~~~~~~~~~f~ 675 (1221)
+||.+||+|||..||+||..|+|+|..|.|.||..|+|+|..+|+|||.+||||+.+|++||.+++.|++.+++.+..|.
T Consensus 456 ~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~y~ 535 (1062)
T KOG4229|consen 456 QLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNLYV 535 (1062)
T ss_pred HHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765544
Q 000932 676 GE---RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLF-ASKMLKPS--------------PKPA 737 (1221)
Q Consensus 676 ~~---~~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l~~lf-~~~~~~~~--------------~~~~ 737 (1221)
.+ ....|+|.||||.|.|++.||++||+|.++.|++.++.+|++.+...+ .......+ ..++
T Consensus 536 ~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~~~ 615 (1062)
T KOG4229|consen 536 FPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPLEV 615 (1062)
T ss_pred cccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccccchh
Confidence 32 357999999999999999999999999999999999999887654433 21111000 0000
Q 000932 738 A---S-SQPGALD----------TQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEED-LVLQQFRCCG 802 (1221)
Q Consensus 738 ~---~-~~~g~~~----------~~~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~-~V~~QLr~~g 802 (1221)
. + .+.+..+ ....+++.+++-++......|....+||.|||++|+.-.+..++.. .+..++...|
T Consensus 616 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~ 695 (1062)
T KOG4229|consen 616 TLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRG 695 (1062)
T ss_pred hhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcc
Confidence 0 0 0001111 1235678888889999999999999999999999999888888876 8999999999
Q 000932 803 VLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPL-SISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQ 881 (1221)
Q Consensus 803 vle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~~-~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~~ 881 (1221)
..++....+.|+..+..|++++++++..........+.. ..|..++..- .-+++..+.+.++.+...-..+.-.+..
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~e 773 (1062)
T KOG4229|consen 696 STATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKN--AINMKSERLTTLLPRYIPDPCLDPVRRE 773 (1062)
T ss_pred cccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhc--cccchhhhhcccccccCccccCCccccc
Confidence 999999999999999999999988876654432222221 2333444432 3367888888888765443333333222
Q 000932 882 VLQAIIRLQKCFRGYQARSRFRELCN----GVITLQSFARGENTRRR 924 (1221)
Q Consensus 882 ~l~Aai~IQa~~Rg~laRk~y~~lr~----aai~IQs~~Rg~~aRr~ 924 (1221)
.....+..|..++.|..+.++...+. ..+.+|.-+++...+..
T Consensus 774 ~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 820 (1062)
T KOG4229|consen 774 RVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLEN 820 (1062)
T ss_pred hhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHh
Confidence 33334456666666666666444322 34555655555444443
No 23
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=97.92 E-value=1.8e-08 Score=107.82 Aligned_cols=90 Identities=24% Similarity=0.267 Sum_probs=67.8
Q 000932 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFG-NAKTSRNDNSSR 354 (1221)
Q Consensus 276 iyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~snpiLEAFG-NAkT~rN~NSSR 354 (1221)
||..+..++..|+ ++.|+||+..|+||||||+|+.--. ...|--...-+.+++.....+++. +|.|.+|++|||
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~----~~~Giip~~~~~~~~ll~~g~~~R~~~~t~~N~~SSR 82 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR----EGAGIIPRTVTDVIDLMDKGNANRTTAATAMNEHSSR 82 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC----CCCCcchHHHHHHHHHHhhccccccccccCCCCccCc
Confidence 7777778888887 5799999999999999999976322 000000011222677888899999 999999999999
Q 000932 355 FGKLIEIHFSAFGKIC 370 (1221)
Q Consensus 355 FGK~i~l~f~~~g~i~ 370 (1221)
+..+++|++.......
T Consensus 83 sH~i~~i~v~~~~~~~ 98 (186)
T cd01363 83 SHSVFRIHFGGKNALA 98 (186)
T ss_pred ccEEEEEEEEEeecCC
Confidence 9999999998654443
No 24
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=96.86 E-value=8.7e-06 Score=66.03 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=38.6
Q 000932 158 KLRVWCRLEDGKWESGMIQSTSGDEAFVLLSNGNVVKVSTGE 199 (1221)
Q Consensus 158 ~~~vW~~~~~~~~~~~~i~~~~~~~~~v~~~~g~~~~v~~~~ 199 (1221)
|..||||+++++|+.|.|++..|+.++|.+.+|+.++|+.++
T Consensus 1 K~~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~dd 42 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKDD 42 (42)
T ss_dssp TTEEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGGG
T ss_pred CCEEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCCC
Confidence 468999999999999999999999999999999999998664
No 25
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=96.50 E-value=3.8e-05 Score=99.32 Aligned_cols=203 Identities=19% Similarity=0.154 Sum_probs=151.7
Q 000932 755 KFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEK 834 (1221)
Q Consensus 755 ~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~ 834 (1221)
++.....+++..+....|.|++||+-|..+....|+...|..|+++.|+++..++.+.+|+..+++..|...+.++.+..
T Consensus 794 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~ 873 (1062)
T KOG4229|consen 794 SPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPET 873 (1062)
T ss_pred ccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCcc
Confidence 56677788999999999999999999988888899999999999999999999999999999999999999999988732
Q 000932 835 QLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQ-VLQ-AIIRLQKCFRGYQARSRFRELCNGVITL 912 (1221)
Q Consensus 835 ~~~~d~~~~~~~IL~~l~i~~~~yqvGkTKVFLR~g~l~~LE~~R~~-~l~-Aai~IQa~~Rg~laRk~y~~lr~aai~I 912 (1221)
.. .........+....+.++.|.+++|+...-...++..-.. ... -+...|++++-...|+.+..+..+.+.+
T Consensus 874 ~~-----~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~ 948 (1062)
T KOG4229|consen 874 VD-----TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLI 948 (1062)
T ss_pred ch-----hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHH
Confidence 11 1111222223345678999999999876655444433221 122 2556799999999999999999999999
Q 000932 913 QSFARGENTRRRHASLGK-S-CSAVVPEIR---------DEQLREIICLQSAIRGWLVRKQLK 964 (1221)
Q Consensus 913 Qs~~Rg~~aRr~y~~lr~-~-AAi~IQ~~~---------~~~~~aai~IQs~~Rg~laRR~~~ 964 (1221)
| |+++..|+.-...-. . +++-+|..| ...+++++.+|+.+++...+..+.
T Consensus 949 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 1009 (1062)
T KOG4229|consen 949 Q--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIFA 1009 (1062)
T ss_pred H--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhHH
Confidence 9 888888875543212 1 566666555 234566777777777765555444
No 26
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=96.10 E-value=0.00015 Score=91.84 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=53.9
Q 000932 897 QARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIR-----DE---QLREIICLQSAIRGWLVRKQLK 964 (1221)
Q Consensus 897 laRk~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~AAi~IQ~~~-----~~---~~~aai~IQs~~Rg~laRR~~~ 964 (1221)
+..++-..+..+++.||+.+|+|..|+.|..+|. +++.||..+ ++ ...|+|.||+.+|+++.||.|+
T Consensus 664 le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~-~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~ 738 (862)
T KOG0160|consen 664 LEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRS-AVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYR 738 (862)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333444456778899999999999999988776 688888888 33 5678899999999999999887
No 27
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.76 E-value=0.00037 Score=94.81 Aligned_cols=382 Identities=13% Similarity=0.068 Sum_probs=179.3
Q 000932 376 TFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLK----ERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALD--- 448 (1221)
Q Consensus 376 tyLLEksRVv~q~~gERnfHIFYqLl~G~~~~~r----~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~--- 448 (1221)
.+....+..+.+.++..+||-|+.+.-+.++..- +.|.| ..++.+.|. ++..+..-|-.+..+.+
T Consensus 219 vLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLL---EKsRv~~Q~-----~~Er~yhiFyqlls~~~~~l 290 (1930)
T KOG0161|consen 219 VLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLL---EKSRVIRQA-----PGERNYHIFYQLLSGADPEL 290 (1930)
T ss_pred hHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHH---HHhHhhccC-----cchhHHHHHHHHHhCCCHHH
Confidence 3445568888899999999999999988654322 22222 122222332 22222222333332221
Q 000932 449 IVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALST--HKIQAGKDSIAKKL 526 (1221)
Q Consensus 449 ~lG~~~~e~~~i~~iLaAILhLGNi~F~~~~~~~~~~~~~~~~l~~aA~LLGv~~~~L~~~L~~--r~i~~~~e~i~~~l 526 (1221)
..++.-+.--.=|++++.-.+ +.-.+... .....+..|-..||+++++...++.- -.+..|+=.+...-
T Consensus 291 ~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~--------eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~ 361 (1930)
T KOG0161|consen 291 KEELLLSDNVKDYKFLSNGES-TIPGVDDA--------EEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEP 361 (1930)
T ss_pred HHHHhhcccchhhhhhccccC-CCCCcchH--------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccc
Confidence 112222221222333333333 22222111 11123455677899999888777532 23344554444333
Q 000932 527 TLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLF 606 (1221)
Q Consensus 527 ~~~qA~~~RDaLak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNErLQ~~f~~~iF 606 (1221)
..+||.-.....|-.+-. |+..=+.-...++.. +.....+-.++.|+...+ .++|=+-|...-+..+|
T Consensus 362 ~~~qa~~~~~~~a~ka~~-llg~~~~~~~~al~~---priKvg~e~v~k~q~~~q--------~~~~v~alAk~lYerlF 429 (1930)
T KOG0161|consen 362 REEQAEFDNTEVADKACH-LLGINVEEFLKALLR---PRIKVGREWVSKAQNVEQ--------VLFAVEALAKALYERLF 429 (1930)
T ss_pred cccccCCCCchHHHHHHH-HcCCCHHHHHHHhcc---cceeccchhhhhcchHHH--------HHHHHHHHHHHHHHHHH
Confidence 556665544433333211 111112222222221 112244456666665544 56666777766666677
Q 000932 607 KLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSL--LDEESNFPKATDLTFANKLKQHLGSNSCFKGE----R-G 679 (1221)
Q Consensus 607 ~~eq~eY~~EgI~~~~i~f~dn~~~ldLie~~p~Gil~l--LDeE~~~p~~tD~~f~~kL~~~~~~~~~f~~~----~-~ 679 (1221)
. ..-.+...+++|. .+-..+|.+++-...=||.. ..+=|. +-| .+||.+.++.|..+.-. + +
T Consensus 430 ~-wlV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~nSFEQLci--Nyt----nEkLQqfFnh~mFvlEqeeY~~Eg 498 (1930)
T KOG0161|consen 430 G-WLVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEFNSFEQLCI--NYT----NEKLQQFFNHHMFVLEQEEYQREG 498 (1930)
T ss_pred H-HHHHHHHHHhhhc----cccCCcceeeeeccccccCcCCHHHHHH--HHH----HHHHHhhhcchhhhhhHHHHHHhC
Confidence 4 4566777888886 45556666665432222222 000010 001 25666665555433211 1 3
Q 000932 680 RAFSIRHYAGEVPYDTNGFLEKNRDPLQT---DIIQLLSS-C------TCQV-LQLFASKMLKPSPKPAASSQPGALDTQ 748 (1221)
Q Consensus 680 ~~F~I~HyaG~V~Y~~~gfleKNrD~l~~---d~~~ll~~-S------~~~l-~~lf~~~~~~~~~~~~~~~~~g~~~~~ 748 (1221)
-+|..-|| |+-.++...|-. .++.+|.. | +..| -.|+.... +.. ...+
T Consensus 499 Iew~fidf---------G~Dlq~~idLIEkp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~---gk~---------~~f~ 557 (1930)
T KOG0161|consen 499 IEWDFIDF---------GLDLQPTIDLIEKPMGILSLLDEECVVPKATDKTFLEKLCDQHL---GKH---------PKFQ 557 (1930)
T ss_pred Cceeeecc---------ccchhhhHHHHhchhhHHHHHHHHHhcCCCccchHHHHHHHHhh---ccC---------cccc
Confidence 35555566 443333332211 22222210 1 0011 11111100 000 0001
Q 000932 749 KQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYG 828 (1221)
Q Consensus 749 ~~tV~~~Fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~ 828 (1221)
++. ..+....+....-+.+ |+|.-+|-..++..-....|+.+|+|++ .+.|...-.| +..+..+..++.
T Consensus 558 ~~k-----~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~~~~~~~ 626 (1930)
T KOG0161|consen 558 KPK-----GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD---YAGAAAAAKGGE 626 (1930)
T ss_pred Ccc-----cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh---hhccchhhhhhh
Confidence 111 1122233333333333 9999999888877777889999999999 7777766555 666666666554
Q 000932 829 V 829 (1221)
Q Consensus 829 ~ 829 (1221)
.
T Consensus 627 ~ 627 (1930)
T KOG0161|consen 627 A 627 (1930)
T ss_pred h
Confidence 4
No 28
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=95.20 E-value=0.0012 Score=83.94 Aligned_cols=45 Identities=31% Similarity=0.524 Sum_probs=39.2
Q 000932 884 QAIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASL 928 (1221)
Q Consensus 884 ~Aai~IQa~~Rg~laRk~y~~lr~aai~IQs~~Rg~~aRr~y~~l 928 (1221)
.++..||..+|||+.|+.|..++..++.||+.+||+..|+.|..+
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki 855 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKI 855 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhhee
Confidence 467789999999999999999999999999999999999888764
No 29
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=95.06 E-value=0.0016 Score=44.91 Aligned_cols=19 Identities=42% Similarity=0.656 Sum_probs=12.8
Q 000932 945 REIICLQSAIRGWLVRKQL 963 (1221)
Q Consensus 945 ~aai~IQs~~Rg~laRR~~ 963 (1221)
+|+|+||+.||||++|++|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4666777777777777665
No 30
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=94.85 E-value=0.0022 Score=44.18 Aligned_cols=19 Identities=47% Similarity=0.861 Sum_probs=12.9
Q 000932 885 AIIRLQKCFRGYQARSRFR 903 (1221)
Q Consensus 885 Aai~IQa~~Rg~laRk~y~ 903 (1221)
|++.||++||||++|+.|+
T Consensus 3 aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 5667777777777777663
No 31
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.98 E-value=0.0066 Score=71.72 Aligned_cols=57 Identities=26% Similarity=0.376 Sum_probs=41.9
Q 000932 248 AVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETA 310 (1221)
Q Consensus 248 aVNP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~ 310 (1221)
++|||...| |++.+-..++.+...|-|-| -+..|-.-..||+||++||.|||||+-.
T Consensus 23 ~~Npf~~~p-~s~rY~~ilk~R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 23 AINPFNGKP-YSQRYYDILKKRRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred hcCCCCCCc-CcHHHHHHHHHHhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccC
Confidence 499999988 66666666665554454433 3455666678999999999999999753
No 32
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.39 E-value=0.024 Score=55.72 Aligned_cols=23 Identities=48% Similarity=0.595 Sum_probs=20.7
Q 000932 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
.|+|+|.||||||+.++.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998865
No 33
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=91.84 E-value=0.033 Score=73.14 Aligned_cols=72 Identities=25% Similarity=0.351 Sum_probs=58.8
Q 000932 885 AIIRLQKCFRGYQA----RSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVR 960 (1221)
Q Consensus 885 Aai~IQa~~Rg~la----Rk~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~AAi~IQ~~~~~~~~aai~IQs~~Rg~laR 960 (1221)
.+..||+.|||++. ...+.....-++.+|++.||+++|+.|....+ .++....++++||+.+|.+.+|
T Consensus 567 ~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q--------~~~~~~~~~i~iqs~~r~f~~r 638 (1401)
T KOG2128|consen 567 FVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQ--------YFKDNMTKIIKIQSKIRKFPNR 638 (1401)
T ss_pred hHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHH--------HHHHhhhhHHHHHHHHHhcccc
Confidence 57789999999984 23344556789999999999999999977655 2345567899999999999999
Q 000932 961 KQLK 964 (1221)
Q Consensus 961 R~~~ 964 (1221)
..|+
T Consensus 639 ~~y~ 642 (1401)
T KOG2128|consen 639 KDYK 642 (1401)
T ss_pred hHHH
Confidence 9998
No 34
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=91.79 E-value=0.034 Score=40.35 Aligned_cols=16 Identities=50% Similarity=0.796 Sum_probs=6.4
Q 000932 947 IICLQSAIRGWLVRKQ 962 (1221)
Q Consensus 947 ai~IQs~~Rg~laRR~ 962 (1221)
+++||+.|||+++|+.
T Consensus 6 a~~IQa~~Rg~~~r~~ 21 (26)
T smart00015 6 AIIIQAAWRGYLARKR 21 (26)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444444433
No 35
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=91.73 E-value=0.035 Score=40.28 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=18.5
Q 000932 905 LCNGVITLQSFARGENTRRRH 925 (1221)
Q Consensus 905 lr~aai~IQs~~Rg~~aRr~y 925 (1221)
+..+++.||++|||+++|+.|
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 457899999999999999876
No 36
>PTZ00014 myosin-A; Provisional
Probab=91.21 E-value=0.046 Score=70.95 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=36.6
Q 000932 906 CNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQL 963 (1221)
Q Consensus 906 r~aai~IQs~~Rg~~aRr~y~~lr~~AAi~IQ~~~~~~~~aai~IQs~~Rg~laRR~~ 963 (1221)
...++.||++|||+++|+.|..++ .++++||+.||+|++++..
T Consensus 777 ~~~~~~iq~~~r~~~~r~~~~~~~---------------~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 777 EPLVSVLEALILKIKKKRKVRKNI---------------KSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhcc
Confidence 346789999999999999998764 3789999999999998753
No 37
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=91.03 E-value=0.05 Score=56.94 Aligned_cols=74 Identities=26% Similarity=0.306 Sum_probs=49.5
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAF----GNAKTSRNDNSSRFGKLIEIHFSAFGKI 369 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~snpiLEAF----GNAkT~rN~NSSRFGK~i~l~f~~~g~i 369 (1221)
-.|.|+|.||||||+.++.+-+.|-..+-. ..+|..--+...+ |-.+.-|--|..|+|.+-.+--+ .|.+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~-----~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~-~G~i 76 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIK-----VYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLAD-QGII 76 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS------EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHH-TTSE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCc-----EEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHh-CCCe
Confidence 468999999999999999999999876432 2233333333322 44566778888899887766665 4554
Q 000932 370 CGAK 373 (1221)
Q Consensus 370 ~Ga~ 373 (1221)
+=+.
T Consensus 77 vIva 80 (156)
T PF01583_consen 77 VIVA 80 (156)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4333
No 38
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=90.73 E-value=0.057 Score=53.13 Aligned_cols=22 Identities=50% Similarity=0.501 Sum_probs=21.0
Q 000932 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|+|.+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
No 39
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=90.56 E-value=0.061 Score=53.40 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=20.6
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+...+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35678999999999999999999887654
No 40
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=90.50 E-value=0.063 Score=56.44 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=22.8
Q 000932 287 MMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 287 m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
+...+....|+|.|++|+|||...+.+++++..-
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4566778999999999999999999988887754
No 41
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=89.94 E-value=0.078 Score=56.11 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=21.4
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
+.|+|+|.||||||+.++.+...|.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999998877654
No 42
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=89.02 E-value=0.11 Score=58.57 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=22.5
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...++|+|++|+|||+.++.++..+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999877665
No 43
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=88.77 E-value=0.12 Score=51.14 Aligned_cols=23 Identities=43% Similarity=0.723 Sum_probs=21.4
Q 000932 296 IIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa 318 (1221)
|+|.|++|+|||+.++.+.++|-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 78999999999999999999974
No 44
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=88.71 E-value=0.12 Score=46.42 Aligned_cols=22 Identities=45% Similarity=0.607 Sum_probs=20.6
Q 000932 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999999887
No 45
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=88.56 E-value=0.12 Score=50.93 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=24.0
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
....|+|.|++|+|||..++.+.+.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999988775
No 46
>PRK05480 uridine/cytidine kinase; Provisional
Probab=88.30 E-value=0.13 Score=55.92 Aligned_cols=26 Identities=38% Similarity=0.367 Sum_probs=23.1
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
+.--|.|+|.||||||+.++.|.+.|
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998876
No 47
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=88.27 E-value=0.13 Score=50.00 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=24.7
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.+.|+|.|.+|+|||++++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4689999999999999999998887764
No 48
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=88.23 E-value=0.14 Score=55.69 Aligned_cols=25 Identities=24% Similarity=0.615 Sum_probs=22.3
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.|+|+|.+|||||++.+.++.++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4899999999999999999888764
No 49
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=88.08 E-value=0.14 Score=55.17 Aligned_cols=26 Identities=50% Similarity=0.535 Sum_probs=22.8
Q 000932 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
|-|+|.||||||+.++.+...|-..+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 67899999999999999998887543
No 50
>PRK00300 gmk guanylate kinase; Provisional
Probab=87.92 E-value=0.15 Score=55.17 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.1
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
..+.|+|.|.||||||+.++.+++.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999998875
No 51
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=87.84 E-value=0.15 Score=58.72 Aligned_cols=28 Identities=39% Similarity=0.443 Sum_probs=25.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
++.+.+=|-||||||||.+++.||..|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4568888999999999999999999986
No 52
>PRK08233 hypothetical protein; Provisional
Probab=87.80 E-value=0.15 Score=53.65 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.0
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
.-|.|+|.||||||+.++.+..+|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578899999999999999988875
No 53
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=87.50 E-value=0.17 Score=65.39 Aligned_cols=61 Identities=26% Similarity=0.390 Sum_probs=51.9
Q 000932 885 AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1221)
Q Consensus 885 Aai~IQa~~Rg~laRk~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~AAi~IQ~~~~~~~~aai~IQs~~Rg~laRR~~~ 964 (1221)
..+.++..++++..|.. -.++..||.++|||+.|+.|..+++. +|+||+++||+-.|+.|+
T Consensus 793 ~~m~~~~a~~~~~~r~~----~~aa~~iq~~f~~yk~r~~~l~tr~p---------------~v~iqa~~rg~q~r~dy~ 853 (975)
T KOG0520|consen 793 VSMKASSAFSMCDDRSD----PAAASRIQKKFRGYKQRKEFLSTRQP---------------IVKIQAAVRGYQVRKDYR 853 (975)
T ss_pred hhhhcccchhcCccccc----hhHHHHhhhhhhhHHhhhhhcccCCc---------------cccchhhhhchhHhhhhh
Confidence 45678888886666653 36789999999999999999988764 899999999999999998
No 54
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=87.48 E-value=0.17 Score=54.63 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=19.9
Q 000932 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999988876
No 55
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=87.17 E-value=0.18 Score=52.54 Aligned_cols=23 Identities=48% Similarity=0.616 Sum_probs=20.4
Q 000932 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38899999999999999997765
No 56
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=87.16 E-value=0.18 Score=53.98 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.1
Q 000932 294 QSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yL 317 (1221)
.-|||||.||+|||+.+|.++.-.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 458999999999999999998755
No 57
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=87.12 E-value=0.18 Score=52.39 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.7
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~y 316 (1221)
....|+|+|+||||||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3688999999999999999877764
No 58
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=86.97 E-value=0.19 Score=49.39 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.3
Q 000932 292 VNQSIIISGESGAGKTETAKFAM 314 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il 314 (1221)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 35789999999999999999976
No 59
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=86.58 E-value=0.21 Score=58.42 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=26.9
Q 000932 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 284 y~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+..++..+. .|||+|..|||||++.+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 344455444 5999999999999999999988753
No 60
>PRK05541 adenylylsulfate kinase; Provisional
Probab=86.53 E-value=0.21 Score=52.80 Aligned_cols=29 Identities=34% Similarity=0.346 Sum_probs=25.0
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.....|+|+|.||||||+.++.+...|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999888864
No 61
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=86.44 E-value=0.21 Score=50.45 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.8
Q 000932 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|+|.+|||||+.++.+...|
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887755
No 62
>PRK06762 hypothetical protein; Provisional
Probab=86.43 E-value=0.21 Score=52.09 Aligned_cols=24 Identities=50% Similarity=0.603 Sum_probs=22.0
Q 000932 294 QSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yL 317 (1221)
..|+|+|.+|||||+.++.+.+.|
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998887
No 63
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=86.39 E-value=0.22 Score=54.32 Aligned_cols=28 Identities=36% Similarity=0.364 Sum_probs=22.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.+...|.|+|.||||||+.++.+...|.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456788999999999999988877654
No 64
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=86.29 E-value=0.22 Score=50.82 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.3
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
....|+++|+.|||||+.+|.+++.|-
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356799999999999999999988764
No 65
>PRK07261 topology modulation protein; Provisional
Probab=86.22 E-value=0.23 Score=52.73 Aligned_cols=23 Identities=39% Similarity=0.420 Sum_probs=19.5
Q 000932 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999875543
No 66
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=86.10 E-value=0.23 Score=56.48 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.2
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
-.|+|+|++|||||++.+.++.++..
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 36899999999999999999998864
No 67
>PTZ00301 uridine kinase; Provisional
Probab=86.00 E-value=0.24 Score=54.52 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=19.6
Q 000932 296 IIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa 318 (1221)
|-|+|.||||||+.++.|.+.|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 56899999999999988876654
No 68
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=85.94 E-value=0.24 Score=54.80 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=20.9
Q 000932 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
|-|+|.||||||++++.|...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 458999999999999999888764
No 69
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=85.87 E-value=0.24 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.622 Sum_probs=23.2
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...|+|+|++|||||++.+.++.++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46799999999999999999988765
No 70
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=85.86 E-value=0.24 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.6
Q 000932 296 IIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa 318 (1221)
|+|.|.+|||||+.++.+-+.|-
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68999999999999999988764
No 71
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=85.67 E-value=0.25 Score=52.76 Aligned_cols=24 Identities=42% Similarity=0.444 Sum_probs=21.5
Q 000932 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999888763
No 72
>PRK06696 uridine kinase; Validated
Probab=85.63 E-value=0.26 Score=54.48 Aligned_cols=30 Identities=20% Similarity=0.137 Sum_probs=24.7
Q 000932 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+..--|.|+|.||||||+.++.|.+.|..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344567889999999999999999887753
No 73
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=85.61 E-value=0.26 Score=52.81 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=20.6
Q 000932 294 QSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yL 317 (1221)
+.|+|+|.||||||+..+.+...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 568999999999999999986554
No 74
>PRK00131 aroK shikimate kinase; Reviewed
Probab=85.59 E-value=0.26 Score=51.35 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.1
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
....|+|.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999997776
No 75
>PRK08118 topology modulation protein; Reviewed
Probab=85.31 E-value=0.27 Score=51.95 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=21.2
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
+-|+|.|.+|||||+.++.|-+.|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999998877653
No 76
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=85.21 E-value=0.28 Score=51.96 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.2
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.+-||++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3569999999999999999887654
No 77
>PRK14737 gmk guanylate kinase; Provisional
Probab=85.04 E-value=0.29 Score=52.76 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.2
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.--|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3458999999999999999887764
No 78
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=85.02 E-value=0.29 Score=50.00 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.4
Q 000932 296 IIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa 318 (1221)
|+|.|.||||||+.++.+++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999988764
No 79
>PF12846 AAA_10: AAA-like domain
Probab=85.02 E-value=0.29 Score=55.42 Aligned_cols=29 Identities=34% Similarity=0.494 Sum_probs=25.3
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
|..++|.|.||||||++++.++.+++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 45689999999999999999998888765
No 80
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=84.99 E-value=0.29 Score=57.76 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=23.8
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...|+|+|++|||||++.+.++.++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 467999999999999999999888753
No 81
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=84.96 E-value=0.29 Score=55.44 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=25.3
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
....|+|+|+.|||||++.+.++.++-.-
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cceEEEEECCCccccchHHHHHhhhcccc
Confidence 45789999999999999999999887753
No 82
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=84.78 E-value=0.3 Score=55.68 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=20.7
Q 000932 294 QSIIISGESGAGKTETAKFA--MQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~i--l~yLa 318 (1221)
+-|||||-||||||++.+.+ |-|.|
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lED~Gy~c 28 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALEDLGYYC 28 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHHhcCeeE
Confidence 45899999999999998877 55655
No 83
>PF05729 NACHT: NACHT domain
Probab=84.73 E-value=0.31 Score=49.99 Aligned_cols=27 Identities=37% Similarity=0.427 Sum_probs=23.4
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
-++|+|+.|+|||+.++.++..++...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 478999999999999999988887643
No 84
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=84.71 E-value=0.31 Score=51.51 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=21.7
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
+-|+|.|.||||||+.++.+++.+-
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 4589999999999999999988653
No 85
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=84.62 E-value=0.31 Score=51.81 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=22.3
Q 000932 295 SIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa 318 (1221)
++++.|.||.|||++++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999999887
No 86
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=84.58 E-value=0.32 Score=54.48 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=20.0
Q 000932 295 SIIISGESGAGKTETAKFA--MQYLA 318 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~i--l~yLa 318 (1221)
-|||||-||||||.+.+.+ |-|.|
T Consensus 3 lvIVTGlSGAGKsvAl~~lEDlGyyc 28 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLEDLGYYC 28 (286)
T ss_pred EEEEecCCCCcHHHHHHHHHhcCeee
Confidence 3899999999999998877 55665
No 87
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=84.40 E-value=0.33 Score=52.48 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.6
Q 000932 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|.|+|-||||||+.++.+.+.|
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999887765
No 88
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=84.25 E-value=0.34 Score=48.92 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.4
Q 000932 296 IIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa 318 (1221)
||++|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999886665
No 89
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=84.16 E-value=0.34 Score=56.13 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.2
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...|+|+|..|||||++++.++.++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 357999999999999999999998865
No 90
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=84.04 E-value=0.35 Score=47.17 Aligned_cols=25 Identities=36% Similarity=0.341 Sum_probs=22.3
Q 000932 296 IIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~ 320 (1221)
|.|.|++|.|||..++.++++|...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999998888753
No 91
>PRK06217 hypothetical protein; Validated
Probab=83.98 E-value=0.35 Score=51.62 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.1
Q 000932 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|+|-||||||+.++.+-+.|
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 9999999999999999887765
No 92
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=83.91 E-value=0.36 Score=57.36 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.2
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...-|+|+|++|||||++.+.++.++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999999864
No 93
>PRK14738 gmk guanylate kinase; Provisional
Probab=83.90 E-value=0.36 Score=52.76 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=21.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
....-|||+|.||||||+.++.+++.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35678999999999999998888764
No 94
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=83.83 E-value=0.36 Score=63.97 Aligned_cols=67 Identities=30% Similarity=0.442 Sum_probs=50.7
Q 000932 887 IRLQKCFRGYQARSRFRELCN-------GVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLV 959 (1221)
Q Consensus 887 i~IQa~~Rg~laRk~y~~lr~-------aai~IQs~~Rg~~aRr~y~~lr~~AAi~IQ~~~~~~~~aai~IQs~~Rg~la 959 (1221)
.++|+..||+..|..+..... .+.-||+.|||++. |..... +|....+-++.+|+..||.++
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~--------~~~~~~~evv~~qs~~R~~ls 607 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDV--------YLDSAKKEVVKFQSLTRGALS 607 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHH--------HHHHhhHHHHHHHHHHHHHHH
Confidence 345999999999888665432 57789999999997 332221 234456789999999999999
Q 000932 960 RKQLK 964 (1221)
Q Consensus 960 RR~~~ 964 (1221)
|+.+.
T Consensus 608 rk~~~ 612 (1401)
T KOG2128|consen 608 RKKYS 612 (1401)
T ss_pred HhhHH
Confidence 99887
No 95
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=83.76 E-value=0.37 Score=53.07 Aligned_cols=26 Identities=46% Similarity=0.590 Sum_probs=20.3
Q 000932 293 NQSII--ISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIi--isGESGAGKTet~K~il~yLa 318 (1221)
+++|| |+|-||||||+.++.+..-|-
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 45555 589999999999988876654
No 96
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.67 E-value=0.37 Score=52.72 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=25.2
Q 000932 290 DGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
......|+|.|++|+|||..++.+.+++.
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999888765
No 97
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=83.52 E-value=0.38 Score=64.11 Aligned_cols=85 Identities=25% Similarity=0.264 Sum_probs=63.1
Q 000932 883 LQAIIRLQKCFRGYQARSRFRELCNGVITLQ-SFARGENTRRRHASLGKS-CSAVVPEIR---------DEQLREIICLQ 951 (1221)
Q Consensus 883 l~Aai~IQa~~Rg~laRk~y~~lr~aai~IQ-s~~Rg~~aRr~y~~lr~~-AAi~IQ~~~---------~~~~~aai~IQ 951 (1221)
+++++.+|..||....|+.|+.....++.+| ..+|....+..+...... +++.+|+.| ....+..|.+|
T Consensus 793 ~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~ 872 (1463)
T COG5022 793 WRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQ 872 (1463)
T ss_pred HHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHH
Confidence 3577888999999999999988888888888 666666666544333332 777888877 22346778899
Q 000932 952 SAIRGWLVRKQLKMHK 967 (1221)
Q Consensus 952 s~~Rg~laRR~~~l~~ 967 (1221)
+.+|.-.|+|++...+
T Consensus 873 ~~~r~~~a~r~~~e~k 888 (1463)
T COG5022 873 SAQRVELAERQLQELK 888 (1463)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988333
No 98
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=83.32 E-value=0.4 Score=49.66 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.5
Q 000932 296 IIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa 318 (1221)
|+|+|.||||||+.++.+..+|.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999885
No 99
>PRK06547 hypothetical protein; Provisional
Probab=83.17 E-value=0.41 Score=51.00 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=23.0
Q 000932 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.....-|+|+|.||||||+.++.+.+.+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4556788999999999999998887653
No 100
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=83.15 E-value=0.41 Score=56.54 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=23.7
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...|+|+|.+|||||+..+.++.++-.
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCC
Confidence 456999999999999999999988753
No 101
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=83.09 E-value=0.41 Score=50.44 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=25.7
Q 000932 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 285 ~~m~~~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
..+...-+++.+++.|.||+|||+....++...
T Consensus 27 ~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 27 EELKELLKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 334444456999999999999999988887764
No 102
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=83.05 E-value=0.41 Score=57.05 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=24.1
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+--|+|+|.+|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999999875
No 103
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=82.93 E-value=0.42 Score=56.40 Aligned_cols=31 Identities=29% Similarity=0.526 Sum_probs=26.8
Q 000932 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 289 ~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
....+.+|+|+|++|+|||.+++.+++.|..
T Consensus 36 ~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 36 RGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred cCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3566789999999999999999999988754
No 104
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=82.93 E-value=0.42 Score=48.84 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.4
Q 000932 295 SIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa 318 (1221)
+|+|.|.+|||||+.++.+-++|-
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987763
No 105
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=82.93 E-value=0.42 Score=50.69 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.1
Q 000932 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
|+|+|+.|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999999864
No 106
>PF13245 AAA_19: Part of AAA domain
Probab=82.90 E-value=0.42 Score=43.94 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=23.2
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+...+|.|..|||||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3556777999999999998888888874
No 107
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=82.74 E-value=0.44 Score=53.40 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=22.8
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
-+++-|.||||||++.|+|-+-+--.+|
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept~G 56 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPTSG 56 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCc
Confidence 4678899999999999999877665443
No 108
>PRK08084 DNA replication initiation factor; Provisional
Probab=82.18 E-value=0.48 Score=52.91 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=27.3
Q 000932 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 283 Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+.+.+.......+++|.|++|+|||+.+..+.+++..
T Consensus 35 ~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 35 ALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3334433444578999999999999998888776653
No 109
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=82.14 E-value=0.48 Score=48.15 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.8
Q 000932 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
++|+|++|+|||+.++.++..++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999888875
No 110
>PRK00889 adenylylsulfate kinase; Provisional
Probab=82.05 E-value=0.49 Score=49.98 Aligned_cols=27 Identities=33% Similarity=0.430 Sum_probs=24.3
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...|+|.|.+|||||+.++.+..+|..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999999864
No 111
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=82.03 E-value=0.49 Score=55.67 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=23.6
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...|+|+|.+|||||+..+.++.|+..
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 356999999999999999999988753
No 112
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=81.93 E-value=0.49 Score=48.43 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.3
Q 000932 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|+|.+|||||+.++.+.+-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999886653
No 113
>PRK04182 cytidylate kinase; Provisional
Probab=81.85 E-value=0.5 Score=49.57 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=20.1
Q 000932 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
-|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999987654
No 114
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=81.73 E-value=0.51 Score=50.36 Aligned_cols=26 Identities=35% Similarity=0.307 Sum_probs=23.0
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
-|.|+|.||||||+..+.++..|...
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhc
Confidence 57889999999999999999998753
No 115
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=81.68 E-value=0.51 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.5
Q 000932 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 116
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=81.60 E-value=0.52 Score=52.27 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=27.6
Q 000932 290 DGVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
.++..-|.|+|.||||||+.++.+...|...++
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 356778899999999999999999888876544
No 117
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=81.34 E-value=0.54 Score=58.06 Aligned_cols=29 Identities=34% Similarity=0.344 Sum_probs=25.8
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.-+..-|-||||||||+++..+|.+|-.-
T Consensus 34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 34 PGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 45778889999999999999999999864
No 118
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=80.91 E-value=0.57 Score=48.16 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.8
Q 000932 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
|.|.|-+|||||+.++.++++|...+
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 78999999999999999999998654
No 119
>PRK04040 adenylate kinase; Provisional
Probab=80.56 E-value=0.6 Score=50.39 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.9
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
.-|+|+|.+|+|||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4589999999999999999888774
No 120
>PRK12377 putative replication protein; Provisional
Probab=80.54 E-value=0.61 Score=52.65 Aligned_cols=44 Identities=25% Similarity=0.280 Sum_probs=31.3
Q 000932 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
-|+++.|..-...... ..+.|+|+|.+|+|||+.+..|.++|..
T Consensus 84 ~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~ 127 (248)
T PRK12377 84 RYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLA 127 (248)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3455544443333322 3478999999999999999999998875
No 121
>PRK03846 adenylylsulfate kinase; Provisional
Probab=80.32 E-value=0.62 Score=50.41 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=25.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.+...|+|+|.||||||+.++.+...|...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 456789999999999999999999888654
No 122
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=80.27 E-value=0.63 Score=52.67 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=26.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
.+..++-|-||||+|||++.+.++.-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 34577888999999999999999998775554
No 123
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=80.08 E-value=0.65 Score=57.41 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=24.8
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
+-.++=|.||||||||+++|.++..+---+
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P~~ 345 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPPSS 345 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 345667889999999999999999887643
No 124
>PRK07667 uridine kinase; Provisional
Probab=80.08 E-value=0.65 Score=50.20 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=21.9
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~ 319 (1221)
-|-|+|-||||||+.++.+.+.|..
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999888864
No 125
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=80.06 E-value=0.65 Score=49.30 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=21.9
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yL 317 (1221)
++.|+|.|.+|||||+.++.+...|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999987664
No 126
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=80.03 E-value=0.65 Score=48.75 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=21.0
Q 000932 296 IIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa 318 (1221)
|.|||.+|||||+.++.+-.+|-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 78999999999999999988765
No 127
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=79.96 E-value=0.66 Score=57.65 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=20.6
Q 000932 885 AIIRLQKCFRGYQARSRFRELCNGVIT 911 (1221)
Q Consensus 885 Aai~IQa~~Rg~laRk~y~~lr~aai~ 911 (1221)
+++++|+..|||++|++++.....+..
T Consensus 815 ~v~k~Q~~~Rg~L~rkr~~~ri~~~~K 841 (1259)
T KOG0163|consen 815 CVLKAQRIARGYLARKRHRPRIAGIRK 841 (1259)
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHH
Confidence 577899999999999998775544333
No 128
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=79.87 E-value=0.66 Score=46.53 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=24.3
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..+.+...+..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred cCCCEEEEEccCCCccccceeeecccccc
Confidence 34678999999999999999988777654
No 129
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=79.81 E-value=0.67 Score=49.68 Aligned_cols=21 Identities=43% Similarity=0.539 Sum_probs=19.7
Q 000932 296 IIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~y 316 (1221)
|+|.|.||||||+-++.|.+.
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999999876
No 130
>PRK13764 ATPase; Provisional
Probab=79.73 E-value=0.68 Score=58.35 Aligned_cols=27 Identities=33% Similarity=0.585 Sum_probs=23.9
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 355999999999999999999999864
No 131
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=79.66 E-value=0.68 Score=52.90 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=19.7
Q 000932 293 NQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~y 316 (1221)
-.-|+|+|+||+||||++=-+++-
T Consensus 145 GvGVLItG~SG~GKSElALeLi~r 168 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKR 168 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHh
Confidence 355999999999999998666654
No 132
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=79.53 E-value=0.69 Score=54.72 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=24.8
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
--++-+-||||||||.|+..+|+-|..-+
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~~ 64 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSPA 64 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCCc
Confidence 34677889999999999999999998743
No 133
>PRK14527 adenylate kinase; Provisional
Probab=79.46 E-value=0.7 Score=49.64 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=23.1
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
+.+-|+|.|.+|||||+.++.+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999998876553
No 134
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.35 E-value=0.71 Score=54.94 Aligned_cols=43 Identities=21% Similarity=0.416 Sum_probs=32.0
Q 000932 273 SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 273 ~PHiyavA~~Ay~~m~~-~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+|+-.. +.++.. .+-+++++++|+.|+|||+.++.+.+.|-.
T Consensus 21 q~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 21 QKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred hHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 4676543 333333 356789999999999999999999888753
No 135
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=79.31 E-value=0.71 Score=53.25 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=23.1
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+.+.-|-|+|.||||||++++.+...|..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44566779999999999999888766653
No 136
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=79.29 E-value=0.72 Score=55.12 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=26.3
Q 000932 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 289 ~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
....+.+++|+|.+|+|||.+++.+++.+..
T Consensus 51 ~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 51 RGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3456788999999999999999999887753
No 137
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=78.99 E-value=0.74 Score=49.12 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.3
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...|+|.|.||||||+.++.+...|.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35689999999999999999887664
No 138
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=78.95 E-value=0.75 Score=56.88 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=22.7
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
--|+|+|++|||||++...++.++..
T Consensus 243 GlilitGptGSGKTTtL~a~L~~l~~ 268 (486)
T TIGR02533 243 GIILVTGPTGSGKTTTLYAALSRLNT 268 (486)
T ss_pred CEEEEEcCCCCCHHHHHHHHHhccCC
Confidence 35889999999999999988888753
No 139
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=78.84 E-value=0.76 Score=53.22 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=21.8
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.+..++++|++|+|||+.++.+.+.+
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 45677789999999999999887664
No 140
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=78.80 E-value=0.76 Score=48.64 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.4
Q 000932 296 IIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa 318 (1221)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999877664
No 141
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=78.78 E-value=0.76 Score=53.95 Aligned_cols=28 Identities=29% Similarity=0.216 Sum_probs=24.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.|+..+.
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 4678899999999999999999987764
No 142
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=78.66 E-value=0.78 Score=57.22 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=26.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.+.+.|.|.|+||||||+..|.++.++.--.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~ 389 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDPLQ 389 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 5679999999999999999999998876433
No 143
>PRK06761 hypothetical protein; Provisional
Probab=78.65 E-value=0.78 Score=52.70 Aligned_cols=26 Identities=42% Similarity=0.548 Sum_probs=23.5
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.-|+|+|.+|||||+.++.+.++|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 45999999999999999999999864
No 144
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=78.63 E-value=0.78 Score=53.69 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=23.6
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...|+|+|.+|||||++.+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 467999999999999999999987643
No 145
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=78.51 E-value=0.79 Score=52.86 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=18.5
Q 000932 294 QSIIISGESGAGKTETAKFA 313 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~i 313 (1221)
+-|+|+|.||||||+.++.+
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 57999999999999999887
No 146
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=78.51 E-value=0.79 Score=53.80 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.4
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.||||||||+..+.|+..+.
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~ 66 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIET 66 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCCC
Confidence 3568899999999999999999988764
No 147
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=78.49 E-value=0.79 Score=48.88 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=21.0
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
.-|||+|.||||||+.++.+++.+-
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcc
Confidence 4589999999999999988877543
No 148
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=78.41 E-value=0.8 Score=53.28 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=23.4
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...|+|+|.+|||||+..+.++.++.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC
Confidence 46899999999999999999988875
No 149
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=78.40 E-value=0.8 Score=49.88 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=24.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.++..+.
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4568899999999999999999987764
No 150
>PRK12608 transcription termination factor Rho; Provisional
Probab=78.38 E-value=0.8 Score=54.41 Aligned_cols=42 Identities=21% Similarity=0.119 Sum_probs=36.0
Q 000932 278 AIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 278 avA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+..++...|.--++-|-++|+|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 566778888887788999999999999999999988877654
No 151
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=78.25 E-value=0.82 Score=53.79 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=25.1
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|+||||||+..|.|+..+.-
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p 73 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLVKA 73 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCC
Confidence 45788999999999999999999887653
No 152
>PRK08356 hypothetical protein; Provisional
Probab=78.24 E-value=0.82 Score=49.39 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=18.5
Q 000932 295 SIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~ 315 (1221)
-|+|+|.+|||||+.++++-.
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998843
No 153
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=78.20 E-value=0.82 Score=50.97 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=26.1
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
.+..++=|.||||||||+.++.++-+..--.|
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G 62 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCc
Confidence 45678889999999999999999888765433
No 154
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=78.18 E-value=0.82 Score=48.51 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.7
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~ 315 (1221)
....|+|.|+||+||||++=.+++
T Consensus 17 ~G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 17 GGVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999877776
No 155
>PRK10436 hypothetical protein; Provisional
Probab=78.11 E-value=0.83 Score=56.06 Aligned_cols=28 Identities=36% Similarity=0.480 Sum_probs=23.8
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.--|+|+|.+|||||+|...++.++...
T Consensus 218 ~GliLvtGpTGSGKTTtL~a~l~~~~~~ 245 (462)
T PRK10436 218 QGLILVTGPTGSGKTVTLYSALQTLNTA 245 (462)
T ss_pred CCeEEEECCCCCChHHHHHHHHHhhCCC
Confidence 4468899999999999999999987643
No 156
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.01 E-value=0.84 Score=50.05 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=23.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..|.++-.+.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3568899999999999999999987654
No 157
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.00 E-value=0.84 Score=50.46 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=25.3
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
...+.+.|.|++|||||+..+.+...+...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~ 58 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLERPT 58 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 457899999999999999999988776543
No 158
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=77.97 E-value=0.84 Score=53.63 Aligned_cols=28 Identities=43% Similarity=0.535 Sum_probs=24.4
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.||||||||+..+.|+..+.
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~ 67 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3568899999999999999999987764
No 159
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=77.76 E-value=0.86 Score=53.96 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=27.4
Q 000932 290 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
-++.|++=|-||||||||+....+++-+.+-
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 3578999999999999999999999888765
No 160
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=77.66 E-value=0.88 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=20.6
Q 000932 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 678999999999999888777653
No 161
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=77.63 E-value=0.88 Score=48.49 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.2
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.-.|+|+|.||||||+.++.+..+|.
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999998875
No 162
>PRK00698 tmk thymidylate kinase; Validated
Probab=77.61 E-value=0.88 Score=48.92 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.1
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
-.|+|.|.+|||||+.++.+-++|..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999999888754
No 163
>PRK08727 hypothetical protein; Validated
Probab=77.61 E-value=0.88 Score=50.72 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=23.3
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+.|+|+|.||+|||+.+..+...+..
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4467999999999999988888777654
No 164
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=77.59 E-value=0.88 Score=50.13 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=24.4
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+..++|.|++|+|||+.++.+.+++..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34678999999999999999988877644
No 165
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=77.53 E-value=0.89 Score=49.66 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=23.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.++-.+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567899999999999999999887654
No 166
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=77.46 E-value=0.9 Score=45.89 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.5
Q 000932 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999998887665
No 167
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=77.39 E-value=0.9 Score=49.36 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=24.0
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+.+.|.|+||||||+..+.++-.+..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGP 53 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4678999999999999999999876643
No 168
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=77.38 E-value=0.9 Score=47.79 Aligned_cols=26 Identities=38% Similarity=0.477 Sum_probs=22.7
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.|+++|++|+|||+++..+...++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 37899999999999999998887754
No 169
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=77.38 E-value=0.9 Score=48.39 Aligned_cols=91 Identities=22% Similarity=0.211 Sum_probs=54.4
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTN---HIL-EAFGNAKTSRNDNSSRFGKLIEIHFSAF 366 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~sn---piL-EAFGNAkT~rN~NSSRFGK~i~l~f~~~ 366 (1221)
.+.-.|-++|-||||||+.+..+-+.|...|-.. .+|.=. .-| .-.|=.+--|+.|-=|-|.+-++--+..
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~-----y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG 95 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHV-----YLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAG 95 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeE-----EEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCC
Confidence 4456888999999999999999988888765321 111100 011 1233334456677777777776655543
Q 000932 367 GKICGAKIQTFLLEKSRVVQ 386 (1221)
Q Consensus 367 g~i~Ga~i~tyLLEksRVv~ 386 (1221)
--+.-+-|..|=-++-.+-.
T Consensus 96 ~iviva~ISP~r~~R~~aR~ 115 (197)
T COG0529 96 LIVIVAFISPYREDRQMARE 115 (197)
T ss_pred eEEEEEeeCccHHHHHHHHH
Confidence 33445556666555544433
No 170
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=77.35 E-value=0.91 Score=52.82 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=24.7
Q 000932 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+....++|+|++|+|||++++.+.+++..
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 333346999999999999999999888764
No 171
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=77.34 E-value=0.91 Score=49.40 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.1
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.+.-.+.
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3568899999999999999999987764
No 172
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.24 E-value=0.92 Score=49.43 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=24.3
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..+.++-.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 52 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLERP 52 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35678999999999999999998876643
No 173
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=77.18 E-value=0.93 Score=45.73 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
+....|+++|+=|||||+-+|.+++.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998877
No 174
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=77.14 E-value=0.93 Score=53.18 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.3
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+-|.||||||||+.++.|+..+.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4567889999999999999999988764
No 175
>PRK03839 putative kinase; Provisional
Probab=77.08 E-value=0.94 Score=48.05 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=19.5
Q 000932 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|.|-+|||||+.++.+-+.|
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999886654
No 176
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=76.99 E-value=0.95 Score=48.46 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=23.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..++++..+.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567899999999999999998876554
No 177
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=76.96 E-value=0.95 Score=49.66 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=24.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..|.++..+..
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~ 39 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDAP 39 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 34678899999999999999999877653
No 178
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=76.92 E-value=0.95 Score=58.31 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=26.4
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
..|.|-|.|+||||||+.+|+++.++.--.|
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G 528 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4588999999999999999999988775443
No 179
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=76.79 E-value=0.97 Score=57.94 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=36.3
Q 000932 264 TAYRQKVMD----SPHVYAIADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~-~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
++||-+..+ ..|+-. .+++++.. +..+++||+|..|.|||++++++.+.|-+
T Consensus 8 rKYRPqtFdEVIGQe~Vv~----~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVR----ALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred HHhCCCcHHHHcCcHHHHH----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 445544433 366654 33343433 45789999999999999999999988865
No 180
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=76.74 E-value=0.97 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.9
Q 000932 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
|+|+|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 799999999999999999988853
No 181
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=76.56 E-value=0.99 Score=49.30 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=24.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..+.++-.+..
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 35688999999999999999999876643
No 182
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=76.31 E-value=1 Score=47.13 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.4
Q 000932 296 IIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~ 320 (1221)
|.|.|.+|||||+.+..++..|...
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 6789999999999999999998754
No 183
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=76.30 E-value=1 Score=49.58 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=24.0
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356889999999999999999998776
No 184
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=76.21 E-value=1 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.6
Q 000932 294 QSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yL 317 (1221)
+.||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 568999999999999999998776
No 185
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=76.14 E-value=1 Score=50.49 Aligned_cols=25 Identities=40% Similarity=0.615 Sum_probs=22.2
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.|+|-|.||||||+..+.++.++..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc
Confidence 5899999999999999999987654
No 186
>PRK15453 phosphoribulokinase; Provisional
Probab=76.13 E-value=1 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=18.8
Q 000932 294 QSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~y 316 (1221)
=-|.|+|-||||||+.++.+.+-
T Consensus 6 piI~ItG~SGsGKTTva~~l~~i 28 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEKI 28 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999988776543
No 187
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=76.13 E-value=1 Score=51.70 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=25.3
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
....|+|.|.+|+|||+++..+..|++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45689999999999999999999888754
No 188
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=76.08 E-value=1 Score=39.89 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=16.5
Q 000932 295 SIIISGESGAGKTETAKFAM 314 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il 314 (1221)
..+|+|++|||||+..-.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998765553
No 189
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=76.05 E-value=1 Score=48.60 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=23.4
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..+.+.|.|++|||||+..+.++-.+.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 568899999999999999999987654
No 190
>PRK14531 adenylate kinase; Provisional
Probab=76.01 E-value=1.1 Score=48.02 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.2
Q 000932 294 QSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yL 317 (1221)
|-|+|.|.+|||||+.++.+-+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999987765
No 191
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=75.98 E-value=1.1 Score=48.87 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=28.7
Q 000932 296 IIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTN-H----ILEAFGN 343 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~sn-p----iLEAFGN 343 (1221)
|.|+|.+|||||+.++++-.+=+.. =+.+.+...+++-+ + |.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~g~~~-i~~D~i~~~~~~~~~~~~~~i~~~fG~ 53 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEELGAFG-ISADRLAKRYTEPDSPILSELVSLLGP 53 (196)
T ss_pred EEEECCCCccHHHHHHHHHHCCCEE-EecchHHHHHHhcCcHHHHHHHHHhCh
Confidence 6799999999999999775541111 01234445555432 2 5566665
No 192
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=75.96 E-value=1.1 Score=45.66 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=20.6
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
..+..|+|+||+|+||+..++.+-.+
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 35678999999999999988876554
No 193
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.90 E-value=1.1 Score=55.81 Aligned_cols=110 Identities=27% Similarity=0.346 Sum_probs=62.1
Q 000932 290 DGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGI-----EYEILQ---TNHILEAFGNAKTSRNDNSSRF----GK 357 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa~~~~~~~~i-----e~~il~---snpiLEAFGNAkT~rN~NSSRF----GK 357 (1221)
-+.||.|||.||+|||||+ .+-|||..-|-+.+++ -.++-+ +-.+-|-.|----..=.-|=|| +.
T Consensus 368 ir~n~vvvivgETGSGKTT---Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~ 444 (1042)
T KOG0924|consen 368 IRENQVVVIVGETGSGKTT---QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSE 444 (1042)
T ss_pred HhhCcEEEEEecCCCCchh---hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCC
Confidence 3689999999999999996 4667887655322111 011111 1112222211000000123344 23
Q 000932 358 LIEIHFSAFGKICGAKIQTFLLEKSRVVQ-LAAGERSY--HIFYQLCA 402 (1221)
Q Consensus 358 ~i~l~f~~~g~i~Ga~i~tyLLEksRVv~-q~~gERnf--HIFYqLl~ 402 (1221)
-..|-|-.+|-+..-++..-+|+|-.||- -...||+- .|.+=||.
T Consensus 445 ~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk 492 (1042)
T KOG0924|consen 445 DTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLK 492 (1042)
T ss_pred ceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHH
Confidence 34566777888888888888999977765 45678865 34444443
No 194
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=75.84 E-value=1.1 Score=48.72 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.8
Q 000932 296 IIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~y 316 (1221)
|.|+|..|||||+.++++-+.
T Consensus 4 i~itG~~gsGKst~~~~l~~~ 24 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQ 24 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999988765
No 195
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.83 E-value=1.1 Score=55.40 Aligned_cols=54 Identities=28% Similarity=0.389 Sum_probs=37.4
Q 000932 264 TAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
..|+-.... .+|+-..-..|+ ...+-+|+++++|..|.|||++++++-+.|-+.
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 345544433 367654433333 234568999999999999999999998887654
No 196
>PRK14528 adenylate kinase; Provisional
Probab=75.73 E-value=1.1 Score=48.19 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=20.8
Q 000932 294 QSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yL 317 (1221)
+-|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999987654
No 197
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.65 E-value=1.1 Score=47.58 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=24.3
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..|.++-.+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEP 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45688999999999999999998776543
No 198
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=75.58 E-value=1.1 Score=51.36 Aligned_cols=28 Identities=25% Similarity=0.530 Sum_probs=24.6
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+--|+++|.+|||||+|.-.++.|+-.
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhc
Confidence 4566999999999999999999999875
No 199
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=75.55 E-value=1.1 Score=49.41 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=25.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
...+.+.|.|+||||||+..+++...+...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~ 54 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS 54 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4568899999999999999999987765433
No 200
>PRK06893 DNA replication initiation factor; Validated
Probab=75.53 E-value=1.1 Score=49.76 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=24.7
Q 000932 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+++|.|.||+|||+.+..+.+.++.
T Consensus 36 ~~~~~~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 36 DLQQPFFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345668999999999999999888877654
No 201
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.47 E-value=1.1 Score=49.78 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=24.1
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..|.++-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3578899999999999999999887654
No 202
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=75.40 E-value=1.1 Score=48.27 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=19.7
Q 000932 294 QSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yL 317 (1221)
--+.++|.||||||+..|+|+.-.
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhh
Confidence 346789999999999999986543
No 203
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=75.37 E-value=1.1 Score=48.73 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=23.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+++.-.+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3567899999999999999999877654
No 204
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.16 E-value=1.2 Score=49.54 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=23.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..|.++-.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3567899999999999999999987664
No 205
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=75.14 E-value=1.2 Score=56.35 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=26.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.+.|.|.|.|+||||||+..|+++..+.--+
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~ 397 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDIDE 397 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 4579999999999999999999998776433
No 206
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=75.06 E-value=1.2 Score=50.51 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=24.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
...-.|++.|++|+|||+.++.+-+.|..+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 344678999999999999999998887543
No 207
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=74.98 E-value=1.2 Score=49.59 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.+.-.+.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4568899999999999999998876654
No 208
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=74.92 E-value=1.2 Score=49.41 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=24.5
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
..+.+.|.|+||||||+..+.++-.+...
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 38 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQPT 38 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 46789999999999999999998776533
No 209
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=74.79 E-value=1.2 Score=47.26 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=22.1
Q 000932 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
|+|.|..|||||+.++.+-++|..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998864
No 210
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=74.77 E-value=1.2 Score=48.74 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.6
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.+...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3568899999999999999998876654
No 211
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=74.69 E-value=1.2 Score=51.29 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=23.9
Q 000932 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 288 ~~~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+..-.++|+|+.|+|||+.++.+.+.+.
T Consensus 33 i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 33 VKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3333333589999999999999999877764
No 212
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.65 E-value=1.2 Score=54.61 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=33.2
Q 000932 273 SPHVYAIADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~-~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
..|+... ...+... +..+++|++|+.|.|||++++++.++|-..
T Consensus 23 Qe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 23 QDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred hHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4777654 3333333 346889999999999999999999988753
No 213
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=74.63 E-value=1.2 Score=47.58 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.2
Q 000932 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
-|||+|.|||||++.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999988887764
No 214
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=74.58 E-value=1.2 Score=40.88 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.7
Q 000932 296 IIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~ 320 (1221)
|+++|..|+|||+++..+...|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6789999999999999999999874
No 215
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=74.54 E-value=1.2 Score=47.06 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=21.0
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.--.|.|+|.||+|||+..|.+..-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34679999999999999888775543
No 216
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=74.52 E-value=1.2 Score=54.00 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=36.2
Q 000932 275 HVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 275 HiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.++.+.-.|...++.-.+.|.+.|.|.||+|||+..+.|+.+.
T Consensus 137 ~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 137 TPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred cccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 4556677888888777889999999999999999988877654
No 217
>PHA00729 NTP-binding motif containing protein
Probab=74.44 E-value=1.2 Score=49.39 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.1
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
..|+|+|.+|+|||+.+..+.+.|.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999887654
No 218
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=74.37 E-value=1.3 Score=46.12 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.4
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+=.|+++|+=|||||+-+|-+++.|.-
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 4556888999999999999999998874
No 219
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=74.36 E-value=1.3 Score=48.07 Aligned_cols=32 Identities=34% Similarity=0.521 Sum_probs=25.6
Q 000932 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 286 ~m~~~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
..+..+.++.|+|.|..|+|||...+.+++.+
T Consensus 13 ~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 13 ELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 34445568999999999999999999888877
No 220
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=74.36 E-value=1.3 Score=48.69 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=18.9
Q 000932 295 SIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~y 316 (1221)
.|.|+|..|||||+.++++.+.
T Consensus 8 ~IglTG~iGsGKStv~~~l~~~ 29 (204)
T PRK14733 8 PIGITGGIASGKSTATRILKEK 29 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999888653
No 221
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=74.32 E-value=1.3 Score=49.13 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=23.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..|.++-.+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3568899999999999999999876654
No 222
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=74.32 E-value=1.3 Score=51.00 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=25.0
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
...+.+.|.|+||||||+..+.++-.+...
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 64 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 346889999999999999999998776543
No 223
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.31 E-value=1.3 Score=48.45 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=23.4
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.. +.+.|.|++|||||+..+.++-.+.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 45 8899999999999999999877664
No 224
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=74.25 E-value=1.3 Score=46.67 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=24.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..+.++-.+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPW 53 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 35688999999999999999999887654
No 225
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=74.21 E-value=1.3 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.6
Q 000932 296 IIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa 318 (1221)
|.|+|.||||||+.++.+...|-
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhC
Confidence 56899999999999988876663
No 226
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=74.05 E-value=1.3 Score=50.99 Aligned_cols=27 Identities=37% Similarity=0.509 Sum_probs=23.8
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
-|+|.|++|+|||+.++.+-+++...+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 389999999999999999988887654
No 227
>PRK13768 GTPase; Provisional
Probab=73.86 E-value=1.3 Score=50.03 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=24.1
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.|+|+|.+|+|||+.+..+..+|+..+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 588999999999999999999998644
No 228
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=73.73 E-value=1.3 Score=55.74 Aligned_cols=44 Identities=32% Similarity=0.373 Sum_probs=33.4
Q 000932 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
|-|.++=.++|..= .++.-.|+|+|.||||||+.++.+...|-.
T Consensus 375 peV~~iL~~~~~~r--~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPPR--HKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhccc--cCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 66666666665443 334458999999999999999999888865
No 229
>PRK13342 recombination factor protein RarA; Reviewed
Probab=73.72 E-value=1.3 Score=53.56 Aligned_cols=42 Identities=26% Similarity=0.383 Sum_probs=31.6
Q 000932 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
.|+... ....+.++..+...+|||.|++|+|||+.++.+.+.
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 555443 345666666677779999999999999999988553
No 230
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=73.72 E-value=1.3 Score=48.06 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.0
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..|.+.-.+-
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3568899999999999999999877654
No 231
>PRK00023 cmk cytidylate kinase; Provisional
Probab=73.70 E-value=1.3 Score=49.10 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.1
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
-.|.|+|.+|||||+.++.+.+.|-
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987763
No 232
>PLN02796 D-glycerate 3-kinase
Probab=73.70 E-value=1.3 Score=52.07 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=20.8
Q 000932 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
|-|+|.||||||+.++.|...|..
T Consensus 103 IGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 103 IGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcc
Confidence 778999999999999988877654
No 233
>PF13479 AAA_24: AAA domain
Probab=73.64 E-value=1.3 Score=48.54 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.2
Q 000932 292 VNQSIIISGESGAGKTETAKFA 313 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~i 313 (1221)
++..|+|.|+||+|||+.++.+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 4678999999999999887776
No 234
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=73.61 E-value=1.4 Score=48.36 Aligned_cols=59 Identities=31% Similarity=0.487 Sum_probs=43.5
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFS 364 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~ 364 (1221)
+=.|+|.|.=|+|||+.++.+-+.|-+ .+..++..=||+|+-|=- +=+|++-.++|.|-
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~------~~~~E~vednp~L~~FY~-------d~~~yaf~~QiyFL 62 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF------KVFYELVEDNPFLDLFYE-------DPERYAFLLQIYFL 62 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC------ceeeecccCChHHHHHHH-------hHHHhhHHHHHHHH
Confidence 447999999999999999998777653 344556677888888864 23456666666664
No 235
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=73.59 E-value=1.4 Score=49.02 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=23.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.+.-.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3578899999999999999999876653
No 236
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=73.59 E-value=1.4 Score=48.95 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=18.3
Q 000932 291 GVNQSIIISGESGAGKTETAK 311 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K 311 (1221)
...+.+.|.|+||||||+.+.
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~ 39 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAF 39 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHH
Confidence 467889999999999999973
No 237
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=73.57 E-value=1.4 Score=47.86 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=23.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..+.+.-.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3568899999999999999999876654
No 238
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=73.56 E-value=1.4 Score=55.71 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.4
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.--|+|+|..|||||+|...+|.++.
T Consensus 316 ~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 316 QGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 34578999999999999988888875
No 239
>PRK02496 adk adenylate kinase; Provisional
Probab=73.48 E-value=1.4 Score=46.97 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.9
Q 000932 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|.|.+|||||+.++.+.+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999997755
No 240
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=73.39 E-value=1.4 Score=49.10 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=23.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..|.+.-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3568899999999999999999876654
No 241
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=73.39 E-value=1.4 Score=47.86 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=23.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..+.+.-.+-
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3568899999999999999999876654
No 242
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=73.37 E-value=1.4 Score=46.25 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.7
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
+.|+|+|-+|||||+.++.+-+.|-
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999877653
No 243
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.34 E-value=1.4 Score=50.14 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=24.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..+.+.-.+.-
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p 76 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIEP 76 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 35689999999999999999998776643
No 244
>PRK10646 ADP-binding protein; Provisional
Probab=73.29 E-value=1.4 Score=46.14 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.3
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
-.|++.|+-|||||+-+|.+++.|.
T Consensus 29 ~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 29 TVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3688999999999999999999884
No 245
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.17 E-value=1.4 Score=46.53 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=23.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|+||||||+..+.+.-.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 52 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKP 52 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35688999999999999999988776543
No 246
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=73.17 E-value=1.4 Score=46.54 Aligned_cols=26 Identities=35% Similarity=0.280 Sum_probs=21.0
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
+++|.|++|+|||..+-.++...+..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~ 26 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR 26 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 47899999999999887777666543
No 247
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=73.07 E-value=1.4 Score=46.71 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=20.8
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~y 316 (1221)
.+..|+|.||+|+||+..++.|-++
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 4588999999999999999888663
No 248
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=73.07 E-value=1.4 Score=53.79 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=24.4
Q 000932 292 VNQS-IIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 292 ~nQs-IiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
++|. |+++|..|||||+|..-++++|-+-.
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~ 286 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNTPE 286 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCC
Confidence 3454 56699999999999999999988643
No 249
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=72.99 E-value=1.4 Score=47.87 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=23.9
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+.+.|.|++|||||+..+.++-.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEEP 52 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4678899999999999999999876643
No 250
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=72.98 E-value=1.4 Score=47.10 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=25.3
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.....+.|.|+||||||+..+.+.-.+...+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 53 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNG 53 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCC
Confidence 4567888999999999999999887765433
No 251
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=72.86 E-value=1.5 Score=49.60 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=24.1
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+.+.|.|+||||||+..+.++-.+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVPY 53 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4688999999999999999999876643
No 252
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=72.85 E-value=1.5 Score=48.41 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=24.4
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..+.+.-.+..
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p 62 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDDG 62 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 35688999999999999999999876543
No 253
>PRK14530 adenylate kinase; Provisional
Probab=72.85 E-value=1.5 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.1
Q 000932 295 SIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa 318 (1221)
-|+|.|.+|||||+.++.+.+.+-
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999977663
No 254
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=72.78 E-value=1.5 Score=54.55 Aligned_cols=45 Identities=16% Similarity=0.301 Sum_probs=33.6
Q 000932 273 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.+|+...-..|+ ...+..|+++++|+.|.|||++++++.+.|-+.
T Consensus 26 q~~vv~~L~~ai---~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTI---LNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHH---HcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 366654333332 344567999999999999999999999988754
No 255
>PRK10908 cell division protein FtsE; Provisional
Probab=72.77 E-value=1.5 Score=48.22 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.+.-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3568899999999999999999876654
No 256
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=72.71 E-value=1.5 Score=47.96 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=23.4
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..|.+.-.+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3568899999999999999999876543
No 257
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=72.70 E-value=1.5 Score=48.39 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=24.6
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..|.+...+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 4678899999999999999999987765
No 258
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=72.69 E-value=1.5 Score=48.06 Aligned_cols=29 Identities=24% Similarity=0.333 Sum_probs=24.0
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..+.+...+..
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~ 57 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDNP 57 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35688999999999999999998766543
No 259
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=72.69 E-value=1.5 Score=43.71 Aligned_cols=25 Identities=44% Similarity=0.679 Sum_probs=23.2
Q 000932 296 IIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~~ 320 (1221)
|+++|.+|+|||..+..+.++|+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 8899999999999999999999864
No 260
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.66 E-value=1.5 Score=48.17 Aligned_cols=41 Identities=27% Similarity=0.308 Sum_probs=18.7
Q 000932 1002 TALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEY 1042 (1221)
Q Consensus 1002 ~~l~eLq~r~~e~e~~l~~~eeEn~~L~eqL~~~e~~~~e~ 1042 (1221)
....+++.++...+..+.+++++|+.|+++++..+++...+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555555555555444444333
No 261
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=72.65 E-value=1.5 Score=49.70 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=24.0
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+.+.|.|+||||||+..|+|+..+.-
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p 64 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLETP 64 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4578999999999999999999877653
No 262
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=72.62 E-value=1.5 Score=46.19 Aligned_cols=27 Identities=37% Similarity=0.380 Sum_probs=23.4
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.|.|+|.||||||+.++.++..|...+
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 578999999999999999999887543
No 263
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=72.62 E-value=1.5 Score=47.01 Aligned_cols=46 Identities=22% Similarity=0.448 Sum_probs=29.4
Q 000932 296 IIISGESGAGKTETAKFAMQYL-AALGGGSEGIEYEILQTNH-----ILEAFG 342 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL-a~~~~~~~~ie~~il~snp-----iLEAFG 342 (1221)
|.|+|-.|||||+.++++-+.. +.+- ..+.+-.++++.+. |.+.||
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i-~~D~~~~~~~~~~~~~~~~i~~~fg 53 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI-DADKIAHQVVEKGSPAYEKIVDHFG 53 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE-eCCHHHHHHHhcCChHHHHHHHHHC
Confidence 7899999999999998776543 2111 12244455554332 667777
No 264
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.59 E-value=1.5 Score=48.61 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.1
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|+||||||+..+.+.-.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34578999999999999999999876643
No 265
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=72.54 E-value=1.5 Score=55.46 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=24.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
+..+.+.|.|+||||||+..++++.++
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466899999999999999999999987
No 266
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=72.46 E-value=1.5 Score=48.37 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=23.6
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..+.+.-.+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567899999999999999998876654
No 267
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=72.41 E-value=1.5 Score=51.30 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=26.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
+..+.|.+.|.+|||||+++..+..+|...+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4568899999999999999999998887543
No 268
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=72.40 E-value=1.5 Score=48.98 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=23.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.+.-.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4568899999999999999999876654
No 269
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=72.39 E-value=1.5 Score=49.60 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=27.4
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
...+.+.|.|+||||||+..|.++-.+...+|
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G 55 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLG 55 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 46788999999999999999999998875444
No 270
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=72.39 E-value=1.5 Score=47.48 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=21.3
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.++|.|.||||||...+.++.-|+..
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~ 65 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALT 65 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHH
Confidence 69999999999999999988887763
No 271
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.39 E-value=1.5 Score=48.03 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=22.8
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..+.+.|.|++|||||+..+++.-.+-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467889999999999999999876543
No 272
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=72.28 E-value=1.5 Score=47.66 Aligned_cols=28 Identities=21% Similarity=0.535 Sum_probs=23.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..+.++..+-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578899999999999999999877654
No 273
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=72.27 E-value=1.5 Score=46.87 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=23.3
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+.|+|.|.+|.|||..+..+.+.++.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 4678999999999999999988887775
No 274
>PRK14974 cell division protein FtsY; Provisional
Probab=72.24 E-value=1.5 Score=51.60 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=25.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
+++..|+++|..|+|||+++..+..+|...
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 346789999999999999999998887653
No 275
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=72.21 E-value=1.5 Score=49.06 Aligned_cols=29 Identities=31% Similarity=0.295 Sum_probs=24.1
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|+||||||+..+++...+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRLAP 55 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34688999999999999999988776543
No 276
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=72.16 E-value=1.5 Score=55.37 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=26.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
...+.|.|.|+||||||+..|.++..+....
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~ 389 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDPQS 389 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 4568899999999999999999998876543
No 277
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=72.14 E-value=1.6 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.0
Q 000932 292 VNQSIIISGESGAGKTETAKFA 313 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~i 313 (1221)
+-.-++|.|.||||||+..+.+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4577899999999999876654
No 278
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=72.06 E-value=1.6 Score=48.55 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=23.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..|.++-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346789999999999999999998764
No 279
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=72.04 E-value=1.6 Score=48.59 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=17.2
Q 000932 292 VNQSIIISGESGAGKTETAKFA 313 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~i 313 (1221)
+.-.+.|.|+||||||+...++
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3456889999999999875544
No 280
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=71.97 E-value=1.6 Score=48.39 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.6
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.+.-.+.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3467899999999999999999987654
No 281
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=71.94 E-value=1.6 Score=47.39 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=23.8
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
....+.|.|++|||||+..+.++..+-.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 53 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4577899999999999999999877654
No 282
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=71.84 E-value=1.6 Score=48.28 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=21.2
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..++|.|++|+|||+..+.+..++..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~ 60 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQK 60 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 46999999999999887777666554
No 283
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=71.81 E-value=1.6 Score=55.31 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=28.0
Q 000932 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 289 ~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
..+..|++||+|.+|.|||++++++.+.|-+.
T Consensus 42 ~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 42 TGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 34568999999999999999999999988754
No 284
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=71.78 E-value=1.6 Score=48.51 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=24.6
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|.+|||||+..+.++-.+.-
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLEEI 53 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35688999999999999999999887643
No 285
>PRK13947 shikimate kinase; Provisional
Probab=71.76 E-value=1.6 Score=45.63 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=19.7
Q 000932 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
.|+|.|-+|||||+.++.+-+-|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 39999999999999998886544
No 286
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=71.63 E-value=1.6 Score=49.04 Aligned_cols=28 Identities=32% Similarity=0.332 Sum_probs=23.7
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+.+.|.|++|||||+..++|.-.+--
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p 51 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4578999999999999999998776643
No 287
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=71.59 E-value=1.6 Score=47.85 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=23.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..+++.-.+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3468899999999999999999987654
No 288
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=71.59 E-value=1.6 Score=54.60 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.1
Q 000932 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+|.|+|+||+|+|||..++.+.++.
T Consensus 83 ~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 83 GPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999997764
No 289
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=71.46 E-value=1.7 Score=48.82 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=22.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456889999999999999999987543
No 290
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=71.39 E-value=1.7 Score=49.20 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=31.2
Q 000932 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 281 ~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
-+|...|.--++.|-++|.|++|+|||+.++.+.+.+..
T Consensus 4 ~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 4 TRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred hhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 345556666678999999999999999998888776653
No 291
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=71.38 E-value=1.7 Score=47.30 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=23.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..+.+.-.+-
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3457788999999999999999976553
No 292
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=71.28 E-value=1.7 Score=46.35 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=24.6
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
...+.+.|.|++|||||+..+.+...+...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRPPA 53 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 346789999999999999999988776543
No 293
>PRK08116 hypothetical protein; Validated
Probab=71.27 E-value=1.7 Score=49.66 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=24.8
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
+..++|.|.+|+|||+.+..+.++|...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999988754
No 294
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=71.24 E-value=1.7 Score=50.45 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=20.9
Q 000932 293 NQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~y 316 (1221)
.-.|+|+|+||+||||++=-+++.
T Consensus 146 G~GvLi~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 146 GIGVLITGESGIGKSETALELIKR 169 (308)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 467999999999999998877775
No 295
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=71.22 E-value=1.7 Score=48.10 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=24.1
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|.+|||||+..+.+.-.+.
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3578899999999999999999887654
No 296
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=71.19 E-value=1.7 Score=48.08 Aligned_cols=24 Identities=46% Similarity=0.573 Sum_probs=20.6
Q 000932 295 SIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa 318 (1221)
.|.|.|.||||||+.++.+...|-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999976543
No 297
>PRK13695 putative NTPase; Provisional
Probab=71.10 E-value=1.7 Score=45.89 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=20.7
Q 000932 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
|+|+|++|+|||+..+.+...|..
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999988777553
No 298
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=71.07 E-value=1.7 Score=47.52 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=23.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.++-.+.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4578899999999999999998876543
No 299
>PRK09087 hypothetical protein; Validated
Probab=71.04 E-value=1.7 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=19.2
Q 000932 293 NQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~ 315 (1221)
+..++|.|+||+|||+.+..+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 56699999999999988886553
No 300
>PRK06620 hypothetical protein; Validated
Probab=71.01 E-value=1.7 Score=47.89 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=18.6
Q 000932 294 QSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~ 315 (1221)
.+++|.|++|+|||+.++.+.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~ 66 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQN 66 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999988886433
No 301
>PRK01184 hypothetical protein; Provisional
Probab=70.99 E-value=1.7 Score=46.15 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=16.3
Q 000932 295 SIIISGESGAGKTETAKFA 313 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~i 313 (1221)
-|+|+|.+|||||+.++++
T Consensus 3 ~i~l~G~~GsGKsT~a~~~ 21 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKIA 21 (184)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3788999999999998854
No 302
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=70.90 E-value=1.7 Score=47.78 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=24.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...|.+.|.|++|||||+..+.+.-.+..
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFYDP 55 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 45688999999999999999998766543
No 303
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.89 E-value=1.7 Score=54.33 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=33.3
Q 000932 273 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.+|+...-..++. ..+-.+++|++|+.|.|||+.++.+.++|-..
T Consensus 21 q~~~v~~L~~~i~---~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 21 QQHALNSLVHALE---TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4777654333332 23456789999999999999999999988753
No 304
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=70.85 E-value=1.7 Score=47.91 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=24.0
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..+.+.-.+.
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3568899999999999999999987654
No 305
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=70.65 E-value=1.8 Score=48.20 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=24.6
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|+||||||+..|.++-.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLEQP 52 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45789999999999999999999876543
No 306
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=70.63 E-value=1.8 Score=49.75 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=25.4
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
...+.+.|.|+||||||+..+++.-.+...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~ 60 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALLKPT 60 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 457889999999999999999998766543
No 307
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=70.60 E-value=1.8 Score=46.92 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=22.7
Q 000932 290 DGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+..|||.|.+|||||+....++..+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~ 40 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG 40 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence 46788999999999999999999888764
No 308
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=70.55 E-value=1.8 Score=48.55 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.2
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..+.+.|.|+||||||+..|.+.-.+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567899999999999999999876654
No 309
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.53 E-value=1.8 Score=53.83 Aligned_cols=44 Identities=25% Similarity=0.346 Sum_probs=31.9
Q 000932 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.|+...-..++. ..+-.++++++|++|+|||++++.+.+.|-..
T Consensus 20 ~~v~~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 20 EHVKEVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred HHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 566444333332 23456889999999999999999998887653
No 310
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=70.50 E-value=1.8 Score=47.08 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=23.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..|.++..+-
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3568899999999999999999877654
No 311
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=70.49 E-value=1.8 Score=45.94 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=20.0
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+.+=|-||||||||+..+.+--.|+-
T Consensus 33 eVLgiVGESGSGKtTLL~~is~rl~p 58 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISGRLTP 58 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhcccCC
Confidence 55667899999999987777655554
No 312
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=70.46 E-value=1.8 Score=48.45 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 356889999999999999999998655
No 313
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=70.43 E-value=1.8 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=20.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAM 314 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il 314 (1221)
....-+.|.|+||||||+..+.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 345678899999999999999774
No 314
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=70.37 E-value=1.8 Score=54.78 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=25.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
+..|.|.|.|+||||||+..|.++..+.--
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~ 394 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYPLT 394 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 467999999999999999999998876543
No 315
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=70.36 E-value=1.8 Score=46.57 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=23.6
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..+.++--+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567899999999999999998877554
No 316
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=70.32 E-value=1.8 Score=54.38 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=26.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
+..+.|.|.|+||||||+..+.++..+-.-+|
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G 387 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYEPDSG 387 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 46789999999999999999999887764433
No 317
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=70.27 E-value=1.8 Score=47.18 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=24.6
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..|.++-.+.-
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIEP 50 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 35688999999999999999999876643
No 318
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=70.26 E-value=1.8 Score=46.81 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=24.3
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..++++..+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLSPP 52 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35688999999999999999998876643
No 319
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=70.25 E-value=1.8 Score=47.47 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=24.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..+.++..+-.
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 60 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANYLP 60 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35688999999999999999999877643
No 320
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=70.24 E-value=1.8 Score=54.45 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=25.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
++.+.|.|.|+||||||+..|.++..+.-
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~p 392 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYDP 392 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 56799999999999999999999887654
No 321
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=70.23 E-value=1.8 Score=49.07 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=24.3
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|.||||||+..++|.-.+..
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~ 61 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEKV 61 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 35788999999999999999999776543
No 322
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=70.22 E-value=1.8 Score=49.11 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=23.3
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.|.-.+.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3568899999999999999998876543
No 323
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=70.17 E-value=1.9 Score=49.11 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=23.5
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+.+.|.|+||||||+..|.+.-.+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGLLRP 53 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 4678999999999999999988766543
No 324
>PRK07429 phosphoribulokinase; Provisional
Probab=70.14 E-value=1.9 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=19.8
Q 000932 294 QSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yL 317 (1221)
=-|-|+|.||||||+.++.+...|
T Consensus 9 ~IIgI~G~SGSGKSTla~~L~~ll 32 (327)
T PRK07429 9 VLLGVAGDSGCGKTTFLRGLADLL 32 (327)
T ss_pred EEEEEECCCCCCHHHHHHHHHhHh
Confidence 346679999999999998887665
No 325
>PRK13946 shikimate kinase; Provisional
Probab=70.11 E-value=1.9 Score=46.21 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.5
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
....|++.|-+|||||+.++.+-+.|
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999987765
No 326
>PRK06526 transposase; Provisional
Probab=70.09 E-value=1.9 Score=48.94 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=23.6
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+.|+|.|.+|+|||+.+..+...++.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 3567999999999999999988776664
No 327
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=70.08 E-value=1.9 Score=46.18 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=22.9
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.-|+|.|-.|||||+.++.+-++|..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999999887764
No 328
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.03 E-value=1.9 Score=53.24 Aligned_cols=43 Identities=23% Similarity=0.398 Sum_probs=30.9
Q 000932 273 SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 273 ~PHiyavA~~Ay~~m~~-~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+|+-. .++.+.. .+-++++|++|+.|.|||++++.+.+.|-.
T Consensus 19 q~~i~~----~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 19 QDHVKK----LIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred cHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 467633 3344443 344578999999999999999999776643
No 329
>PF08283 Gemini_AL1_M: Geminivirus rep protein central domain; InterPro: IPR022692 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. This is the central region of the geminivirus rep proteins []. It is found C-terminal to PF00799 from PFAM and is thought to be responsible for oligomerisation.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters
Probab=70.02 E-value=1.9 Score=42.36 Aligned_cols=64 Identities=28% Similarity=0.380 Sum_probs=38.9
Q 000932 232 RYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTE 308 (1221)
Q Consensus 232 Ry~~~~iYT~~G~iLiaVNP~k~l~-iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTe 308 (1221)
.|..+.|++-. .-.-|+||.... +.-++.|.... ..+||..|.. +.-++.||||.|+|-.|||.
T Consensus 41 ~~na~riF~~~--~e~y~~Pf~~ssf~~~pe~i~~W~-----~~nv~~~aa~------rp~rp~SivieG~sRTGKT~ 105 (106)
T PF08283_consen 41 EYNADRIFPPP--PEPYVSPFPLSSFLQVPEEIEEWA-----DENVYSVAAA------RPLRPISIVIEGDSRTGKTM 105 (106)
T ss_pred HHHHHHhCCCC--CccccCCCCChhhccCChHHHHHH-----HhccCccccc------CCCCCCceeEecCCccCcCC
Confidence 46667777653 333456766332 22233333322 3677766543 23468999999999999994
No 330
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=70.02 E-value=1.9 Score=47.21 Aligned_cols=27 Identities=33% Similarity=0.358 Sum_probs=23.0
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..+.+.|.|+||||||+..|.+...+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456788999999999999999987654
No 331
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=70.01 E-value=1.9 Score=49.99 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=24.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|.+|||||+..++++-.+..
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p 56 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMISP 56 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34688999999999999999999877653
No 332
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=69.99 E-value=1.9 Score=47.02 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.9
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~ 319 (1221)
-|.|+|..|||||+..+.+++.|..
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCc
Confidence 4789999999999999999887764
No 333
>PF13173 AAA_14: AAA domain
Probab=69.87 E-value=1.9 Score=43.22 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=23.3
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
++.++|.|.-|+|||+.++.+++++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46789999999999999999998766
No 334
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.84 E-value=1.9 Score=46.88 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.4
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+.|.|+||||||+..+.+.-.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 51 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPP 51 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6889999999999999999776543
No 335
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=69.83 E-value=1.9 Score=48.88 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=23.1
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.||||||+..+.++..+
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 357889999999999999999997643
No 336
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=69.79 E-value=1.9 Score=48.17 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=23.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.+.-.+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567889999999999999999877654
No 337
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=69.79 E-value=1.9 Score=49.91 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=23.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
+.+=.|+|+|.||||||+.+..+..+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999998887
No 338
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=69.79 E-value=1.9 Score=45.82 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=24.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|.||||||+..+.++..+..
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~ 51 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35688999999999999999998876543
No 339
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=69.76 E-value=1.9 Score=55.84 Aligned_cols=30 Identities=33% Similarity=0.500 Sum_probs=25.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
...|.|.|.|+||||||+..|+++..+.-.
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~p~ 527 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQAR 527 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 356899999999999999999998876543
No 340
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=69.74 E-value=1.9 Score=48.57 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=24.4
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..+.|.-.+..
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p 56 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLVAP 56 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35688999999999999999998876643
No 341
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=69.74 E-value=1.9 Score=52.69 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.4
Q 000932 291 GVNQSIIISGESGAGKTETAK 311 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K 311 (1221)
...+.|.|+|+||||||+..+
T Consensus 30 ~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 30 PSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred cCCCEEEEECCCCCCHHHHHh
Confidence 567999999999999999999
No 342
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=69.69 E-value=1.9 Score=47.15 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=24.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|.+|||||+..+++.-.+..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 56 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLVEL 56 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 35688999999999999999998776543
No 343
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=69.68 E-value=1.9 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.3
Q 000932 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|.|.+|||||+.++.+-+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999998886654
No 344
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=69.65 E-value=1.9 Score=48.18 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=23.3
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+++.-.+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3568899999999999999998876553
No 345
>PLN03025 replication factor C subunit; Provisional
Probab=69.64 E-value=1.9 Score=50.25 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=27.3
Q 000932 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 284 y~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.+.+...+.-..++++|.+|+|||++++.+.+.|.
T Consensus 25 L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 25 LQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 34444555556799999999999999999988764
No 346
>PRK05439 pantothenate kinase; Provisional
Probab=69.62 E-value=1.9 Score=50.19 Aligned_cols=29 Identities=31% Similarity=0.357 Sum_probs=23.4
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+..--|-|+|.+|||||+.++.+...|..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34456889999999999999988776654
No 347
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=69.58 E-value=1.9 Score=49.79 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.2
Q 000932 293 NQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~y 316 (1221)
...++|+|+||+||||++=-+++.
T Consensus 146 g~gvli~G~sg~GKS~lal~Li~r 169 (304)
T TIGR00679 146 GVGVLITGKSGVGKSETALELINR 169 (304)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 578999999999999998877775
No 348
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=69.57 E-value=1.9 Score=46.87 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.2
Q 000932 294 QSIIISGESGAGKTETAKFAM 314 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il 314 (1221)
..++|+|++|||||+..|.+.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 678999999999999999884
No 349
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=69.49 E-value=2 Score=47.67 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=24.4
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|+||||||+..+.+.-.+.-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYVP 54 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 45788999999999999999998876643
No 350
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=69.43 E-value=2 Score=46.80 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=21.9
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
++.|++.|.+|+|||+|+-.+-.|+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 3568999999999999977776666543
No 351
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=69.42 E-value=2 Score=48.92 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=24.3
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|+||||||+..+.+.-.+..
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 61 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLLKP 61 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45788999999999999999988776543
No 352
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=69.40 E-value=2 Score=51.04 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=30.2
Q 000932 282 TAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 282 ~Ay~~m~~-~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+..+.. .+-+++++|+|+.|.|||+.++.+.++|.+
T Consensus 33 ~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 33 AFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 34444444 345889999999999999999999998876
No 353
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=69.37 E-value=2 Score=47.40 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=23.6
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+.+.|.|++|||||+..+.+...+.-
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 32 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIPP 32 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4577899999999999999999876543
No 354
>PRK00625 shikimate kinase; Provisional
Probab=69.36 E-value=2 Score=45.86 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.8
Q 000932 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|.|-.|||||+.++.+-+.|
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999986655
No 355
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=69.26 E-value=2 Score=46.51 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=24.4
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|.+|||||+..+.++..+..
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 45688999999999999999998776543
No 356
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=69.26 E-value=2 Score=53.60 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=25.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
+..+.+.|.|+||||||+..|.++.++--
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 374 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFVDP 374 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46789999999999999999999887653
No 357
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=69.26 E-value=2 Score=46.45 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=23.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..++++..+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3568899999999999999999877654
No 358
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=69.22 E-value=2 Score=45.91 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=26.3
Q 000932 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+-++++++.|+.|.|||+.++.+.+.|..
T Consensus 11 ~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 11 GRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 345799999999999999999999888765
No 359
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=69.20 E-value=2 Score=48.13 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=23.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.+.-.+.
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3568899999999999999998877653
No 360
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=69.15 E-value=2 Score=47.76 Aligned_cols=28 Identities=32% Similarity=0.353 Sum_probs=23.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..+.|+-.+.
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3568899999999999999999876554
No 361
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=69.10 E-value=2 Score=48.86 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=24.1
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|.||||||+..+.|...+.
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3468899999999999999999987664
No 362
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=69.09 E-value=2 Score=48.12 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=23.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.+...+-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3568899999999999999999887654
No 363
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=69.09 E-value=2 Score=47.34 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.0
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.+|||||+..++++-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356889999999999999999887654
No 364
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.02 E-value=2 Score=46.15 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=22.3
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..|.+.-.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45688999999999999999998753
No 365
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=68.96 E-value=2.1 Score=49.06 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=27.3
Q 000932 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 286 ~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.+...+.-++++|.|.+|||||+..+.+...+..-
T Consensus 104 ~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~ 138 (270)
T TIGR02858 104 YLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTG 138 (270)
T ss_pred HHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCC
Confidence 33333334889999999999999999998887654
No 366
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=68.95 E-value=2.1 Score=47.82 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.2
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..+.+.|.|+||||||+..|.+.-.+-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467899999999999999999887654
No 367
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.89 E-value=2.1 Score=53.64 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=32.1
Q 000932 273 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+|+-..-..++. ..+-.+++|++|+.|.|||++++.+.+.|-.
T Consensus 21 q~~v~~~L~~~i~---~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRALTNALE---QQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHHHHHHHH---cCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4666543333322 2355788999999999999999999988864
No 368
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=68.83 E-value=2.1 Score=45.13 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=23.2
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.|.|+|..|+|||+.++.+...|..-
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 48999999999999999998888764
No 369
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=68.82 E-value=2.1 Score=44.73 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.6
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
-.|++.|.||||||+..|.+..-|-
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELG 37 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhC
Confidence 3699999999999999999877554
No 370
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=68.82 E-value=2.1 Score=46.78 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.5
Q 000932 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|.|.+|||||+.++.+-+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999987644
No 371
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=68.82 E-value=2.1 Score=45.42 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=23.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|.+|||||+..|.+.-.+..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 54 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 35688999999999999999988776543
No 372
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=68.81 E-value=2.1 Score=46.20 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=23.1
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..+.+.|.|++|||||+..+.+.-.+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467889999999999999998877654
No 373
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=68.71 E-value=2.1 Score=54.59 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=24.1
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..++.|+|.|++|+|||+.++.+.....
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 4567899999999999999999977654
No 374
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=68.68 E-value=2.1 Score=47.37 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=23.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..+.++-.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 51 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFLTP 51 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35688999999999999999988765543
No 375
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=68.66 E-value=2.1 Score=48.19 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.5
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..+.+.|.|+||||||+..+.++..+-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567888999999999999999987664
No 376
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=68.64 E-value=2.1 Score=41.56 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.4
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.++|.|.+|+|||.++-.++.++...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc
Confidence 37899999999999999888887754
No 377
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=68.62 E-value=2.1 Score=55.25 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=26.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
...+.|.|.|+||||||+..|.++..+.-.+|
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 508 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 35689999999999999999999998764433
No 378
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=68.57 E-value=2.1 Score=53.92 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=26.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
...+.+-|.|+||||||+..+.+++|+-...
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~ 383 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS 383 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 4567888999999999999999999987643
No 379
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=68.56 E-value=2.1 Score=49.53 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=25.0
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
...+.+.|.|.+|||||+..|+++-.+.-.
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~ 46 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRPT 46 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 356788899999999999999998876543
No 380
>PRK06851 hypothetical protein; Provisional
Probab=68.56 E-value=2.1 Score=50.95 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=26.9
Q 000932 290 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 290 ~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
...++.+||+|-+|+|||+.++.+++.+...
T Consensus 27 ~~~~~~~il~G~pGtGKStl~~~i~~~~~~~ 57 (367)
T PRK06851 27 DGANRIFILKGGPGTGKSTLMKKIGEEFLEK 57 (367)
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3467889999999999999999999888754
No 381
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.55 E-value=2.1 Score=47.66 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=23.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.+.-.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3568889999999999999998876543
No 382
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.54 E-value=2.1 Score=46.45 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=24.3
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..+.+.-.+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 4568899999999999999999887765
No 383
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=68.53 E-value=2.1 Score=44.74 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.1
Q 000932 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
++|+|.+|||||+..+.+++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhcc
Confidence 6899999999999999877653
No 384
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=68.49 E-value=2.1 Score=49.24 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=22.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
+..+.++|+|++|+|||+.++.+.+.+
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 345779999999999999998876544
No 385
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=68.46 E-value=2.1 Score=48.25 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.3
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356889999999999999999987654
No 386
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=68.45 E-value=2.1 Score=43.31 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=20.6
Q 000932 296 IIISGESGAGKTETAKFAM--QYLAAL 320 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il--~yLa~~ 320 (1221)
|++.|.+|||||...+.+. .++...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~ 28 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLART 28 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeee
Confidence 7899999999999999888 555443
No 387
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=68.34 E-value=2.2 Score=48.40 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=23.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.++-.+-
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3568899999999999999999887654
No 388
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=68.33 E-value=2.2 Score=47.37 Aligned_cols=29 Identities=17% Similarity=0.426 Sum_probs=24.6
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..+.++-.+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 55 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYDP 55 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCCC
Confidence 35688999999999999999999876643
No 389
>PRK00279 adk adenylate kinase; Reviewed
Probab=68.33 E-value=2.2 Score=46.82 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=20.5
Q 000932 295 SIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa 318 (1221)
-|+|.|.+|||||+.++.+-+.+-
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999998866543
No 390
>PRK14532 adenylate kinase; Provisional
Probab=68.33 E-value=2.2 Score=45.57 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.2
Q 000932 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
.|+|.|.+|||||+.++.+-+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999987655
No 391
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=68.30 E-value=2.2 Score=45.11 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=23.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..+.+...+.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3567899999999999999998876654
No 392
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=68.25 E-value=2.2 Score=48.02 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=23.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.+.-.+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3568899999999999999999877654
No 393
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=68.25 E-value=2.2 Score=47.94 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=23.6
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..|.+...+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 3568899999999999999999876554
No 394
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=68.11 E-value=2.2 Score=48.06 Aligned_cols=28 Identities=36% Similarity=0.319 Sum_probs=23.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..|.+.-.+.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3568899999999999999999877654
No 395
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=68.09 E-value=2.2 Score=49.96 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=25.4
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
...+.+.|.|+||||||+..++++..+.-.
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~ 79 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIKSK 79 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 467889999999999999999998766543
No 396
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=67.98 E-value=2.2 Score=43.81 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=23.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..+.+...+-
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3467888999999999999998877654
No 397
>PLN02200 adenylate kinase family protein
Probab=67.98 E-value=2.2 Score=47.69 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=21.3
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.--|+|.|.+|||||+.++.+.+.+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999887755
No 398
>PRK13949 shikimate kinase; Provisional
Probab=67.90 E-value=2.2 Score=45.15 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=20.9
Q 000932 295 SIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa 318 (1221)
.|+|.|..|||||+.++.+-+.|-
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999998876654
No 399
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=67.89 E-value=2.2 Score=45.96 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=23.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999998776
No 400
>PLN02318 phosphoribulokinase/uridine kinase
Probab=67.79 E-value=2.3 Score=53.39 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=29.9
Q 000932 275 HVYAIADTAYNEMMGDG-VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 275 HiyavA~~Ay~~m~~~~-~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
|=|-++-+|-+-+.... ..--|-|.|.||||||+.++.|...+
T Consensus 46 ~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 46 KGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred cchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 45556666665554422 22466779999999999999987665
No 401
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=67.77 E-value=2.3 Score=46.60 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.|.--+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4578999999999999999998876553
No 402
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=67.69 E-value=2.3 Score=48.05 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=23.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|.+|||||+..+.|...+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3467889999999999999999877654
No 403
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=67.67 E-value=2.3 Score=47.32 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.3
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..+.+.|.|++|||||+..|++.-.+.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567889999999999999999887654
No 404
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.58 E-value=2.3 Score=48.17 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=23.0
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 356889999999999999999886654
No 405
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=67.54 E-value=2.3 Score=48.27 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=23.6
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+.+.|.|++|||||+..+.|...+.-
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p 65 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGMIEP 65 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 4678999999999999999998876643
No 406
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.53 E-value=2.3 Score=53.86 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=32.9
Q 000932 273 SPHVYAIADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~-~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+|+-.+-. ++... +..+++|++|+.|.|||++++++.++|-.
T Consensus 21 Qe~v~~~L~----~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 21 QETVKAILS----RAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CHHHHHHHH----HHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 477744433 33334 34799999999999999999999998865
No 407
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=67.52 E-value=2.3 Score=48.68 Aligned_cols=30 Identities=27% Similarity=0.281 Sum_probs=24.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
+..+.|++.|.+|+|||+++-.+..+|+..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 345789999999999999998888887654
No 408
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=67.43 E-value=2.3 Score=48.51 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=24.0
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..++|...+..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p 59 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLHVP 59 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34678899999999999999998876543
No 409
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=67.39 E-value=2.3 Score=46.10 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=24.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..+.+...+..
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 60 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLEA 60 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 35688999999999999999999876543
No 410
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=67.39 E-value=2.3 Score=47.53 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.4
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
..+.+.|.|+||||||+..+.|.-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 56789999999999999999987643
No 411
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=67.35 E-value=2.3 Score=54.92 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=26.1
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
...+.|.|.|+||||||+..|+++..+.-..
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~ 519 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE 519 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 3568999999999999999999988776433
No 412
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=67.28 E-value=2.4 Score=46.28 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.2
Q 000932 295 SIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yL 317 (1221)
-|+|+|-||||||+.++.+...+
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999887765
No 413
>PRK04195 replication factor C large subunit; Provisional
Probab=67.28 E-value=2.4 Score=52.54 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.4
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...++|+|++|+|||+.++.+.+.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999887765
No 414
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=67.28 E-value=2.4 Score=47.47 Aligned_cols=40 Identities=30% Similarity=0.376 Sum_probs=28.5
Q 000932 280 ADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 280 A~~Ay~~m~~~-~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+++|..|... ..+.+-.+.|++|+|||||+|.+-+.|..
T Consensus 18 t~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~ 58 (231)
T PF12774_consen 18 TDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALGR 58 (231)
T ss_dssp HHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCC
Confidence 45556555432 34577789999999999999988776654
No 415
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=67.26 E-value=2.4 Score=48.10 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=23.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..++|.-.+-
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3467889999999999999998877654
No 416
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=67.18 E-value=2.4 Score=51.45 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.1
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...|+|.|++|+|||+.++.+-+.|
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4679999999999999998885443
No 417
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=67.13 E-value=2.4 Score=46.54 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..+.+.-++.
T Consensus 29 ~~G~~~~I~G~nGsGKStLl~~l~G~~~ 56 (220)
T TIGR02982 29 NPGEIVILTGPSGSGKTTLLTLIGGLRS 56 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4568899999999999999998876654
No 418
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=67.12 E-value=2.4 Score=48.28 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.1
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..+.+.|.|+||||||+..+.++-.+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467889999999999999999877654
No 419
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=67.09 E-value=2.4 Score=46.41 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=23.5
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+.+.|.|+||||||+..+.+...+..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 63 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHV 63 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 4678999999999999999998776543
No 420
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=67.07 E-value=2.4 Score=46.63 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=23.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|.+|||||+..+++.-.+.
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4578899999999999999998876654
No 421
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=67.04 E-value=2.4 Score=45.16 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=18.5
Q 000932 296 IIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~ 315 (1221)
|.|+|-+|||||+.++++.+
T Consensus 2 i~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999877
No 422
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.00 E-value=2.4 Score=47.39 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=22.6
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 346889999999999999999887654
No 423
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.99 E-value=2.4 Score=47.48 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.3
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|.||||||+..+.|.-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35688999999999999999988653
No 424
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=66.91 E-value=2.4 Score=44.85 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=20.6
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
.+.-.||+|++|+|||+....|+-.|
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34678999999999999997775444
No 425
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=66.90 E-value=2.4 Score=49.35 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=29.4
Q 000932 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 276 iyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
+..+.+.-+.....-.....|+|+|-+|||||+.++.+-+.|
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 116 VRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred HHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 333444333333344567789999999999999999987654
No 426
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.89 E-value=2.4 Score=44.65 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=23.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..+.+.-.+-.
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 35688999999999999998888766543
No 427
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=66.82 E-value=2.4 Score=55.02 Aligned_cols=29 Identities=45% Similarity=0.565 Sum_probs=24.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
..+.+|+|+|.+|.|||.+++.+++-|..
T Consensus 779 gpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 779 GSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34456679999999999999999988864
No 428
>PRK13975 thymidylate kinase; Provisional
Probab=66.78 E-value=2.4 Score=45.31 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=21.6
Q 000932 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~il~yLa 318 (1221)
.-|+|.|..|||||+.++.+-+.|-
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999998877663
No 429
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=66.78 E-value=2.4 Score=47.56 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=21.3
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.....|.|+||||||+..+.|+--|.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45678999999999999888766554
No 430
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=66.73 E-value=2.5 Score=44.37 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=24.1
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|.||||||+..+.++-.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35688999999999999999998766543
No 431
>PRK06315 type III secretion system ATPase; Provisional
Probab=66.72 E-value=2.5 Score=51.60 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=36.0
Q 000932 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 276 iyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
++.+.-+|...++.-++.|.|.|.|+||+|||+..+.++.++
T Consensus 147 ~l~TGi~aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 147 ILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred cccceEEEEeccccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 455666788888778899999999999999999999998876
No 432
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=66.66 E-value=2.5 Score=45.27 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=20.2
Q 000932 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|.|-.|||||+.++.+-+++
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998875
No 433
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=66.64 E-value=2.5 Score=52.54 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=22.9
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
+.=-|.|.|.||||||+.++.+.++|-
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~ 309 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLG 309 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 334688999999999999999988873
No 434
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=66.62 E-value=2.5 Score=50.00 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=24.3
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|+||||||+..|.+.-.+.-
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p 57 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIRCINLLERP 57 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 35678889999999999999999877653
No 435
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=66.61 E-value=2.5 Score=53.11 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=26.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
...|.+.|.|+||||||+..|.++..+.--.
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~ 377 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQS 377 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4678999999999999999999998765433
No 436
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.60 E-value=2.5 Score=47.67 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=23.1
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357889999999999999999887654
No 437
>PRK07952 DNA replication protein DnaC; Validated
Probab=66.56 E-value=2.5 Score=47.67 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=25.2
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.+.++++|.+|+|||+.+..|..+|...
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~ 126 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR 126 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3689999999999999999999998764
No 438
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.52 E-value=2.5 Score=48.23 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=24.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|.+|||||+..|+++-.+..
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFLHFNGILKP 54 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45789999999999999999999776643
No 439
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=66.52 E-value=2.5 Score=49.75 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=17.3
Q 000932 294 QSIIISGESGAGKTETAKFA 313 (1221)
Q Consensus 294 QsIiisGESGAGKTet~K~i 313 (1221)
-.++|.|+||+|||++.++|
T Consensus 30 ef~vllGPSGcGKSTlLr~I 49 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMI 49 (338)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35889999999999988776
No 440
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=66.44 E-value=2.5 Score=47.97 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=26.5
Q 000932 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~ 315 (1221)
|++=.+-+.+...+. .+..|+|.|++|+|||+.++.+-+
T Consensus 5 ~~~~~l~~~~l~~l~---~g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 5 DAVKRVTSRALRYLK---SGYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHHHHHh---cCCeEEEEcCCCCCHHHHHHHHHH
Confidence 333334444444333 357899999999999999987754
No 441
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=66.43 E-value=2.5 Score=54.01 Aligned_cols=29 Identities=38% Similarity=0.504 Sum_probs=25.2
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
..+.+.|.|+||||||+..+.|+..+.-.
T Consensus 41 ~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~ 69 (623)
T PRK10261 41 RGETLAIVGESGSGKSVTALALMRLLEQA 69 (623)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCC
Confidence 46889999999999999999999887543
No 442
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=66.42 E-value=2.5 Score=46.99 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.6
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|.+|||||+..+.+.-.+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3467899999999999999999877654
No 443
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=66.32 E-value=2.5 Score=48.84 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=26.1
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
..+.+.+.|++|||||++.|+++..+...+|
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p~~G 60 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 4567888999999999999999988876544
No 444
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=66.30 E-value=2.5 Score=48.42 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=24.3
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.|.|+|.||||||+.+..++..|...+
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 478999999999999999999998765
No 445
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=66.18 E-value=2.6 Score=50.06 Aligned_cols=27 Identities=30% Similarity=0.246 Sum_probs=22.9
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..+.+.|.|+||||||+..+.|.-.+-
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467899999999999999998876553
No 446
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=66.10 E-value=2.6 Score=44.89 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=17.7
Q 000932 296 IIISGESGAGKTETAKFAM 314 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il 314 (1221)
|+|+|-.|.|||+.|+.+-
T Consensus 3 I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred EEEeCCCCCchHHHHHHHH
Confidence 8999999999999999885
No 447
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.07 E-value=2.6 Score=47.53 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.5
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
..+.+.|.|+||||||+..+.|...+
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999987654
No 448
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=66.06 E-value=2.6 Score=47.18 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.7
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~y 316 (1221)
..+.+.|.|+||||||+..+.+...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4678999999999999999998654
No 449
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.00 E-value=2.6 Score=48.10 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=22.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 346788999999999999999887654
No 450
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=65.98 E-value=2.6 Score=47.89 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=23.4
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|.+|||||+..+.|.-.+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3468899999999999999998876654
No 451
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=65.93 E-value=2.6 Score=47.57 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=23.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|.+|||||+..+.|...+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3568899999999999999998876654
No 452
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=65.84 E-value=2.6 Score=48.22 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.3
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~ 315 (1221)
.++.+++.|++|+|||...+.+++
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCCcEEEECCCCCchhHHHHhhhc
Confidence 478899999999999988777554
No 453
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=65.82 E-value=2.6 Score=46.25 Aligned_cols=28 Identities=29% Similarity=0.299 Sum_probs=23.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..+.++-.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578899999999999999998877554
No 454
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=65.80 E-value=2.6 Score=49.42 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=36.3
Q 000932 275 HVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 275 HiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.+|...-.|...++.-.+.|.+.|.|.||+|||+..+.+.....
T Consensus 51 ~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~ 94 (326)
T cd01136 51 EVLPTGVRAIDGLLTVGKGQRLGIFAGSGVGKSTLLGMIARGTT 94 (326)
T ss_pred eEcCCCcEEEeeeeEEcCCcEEEEECCCCCChHHHHHHHhCCCC
Confidence 35667777888887778899999999999999999888776543
No 455
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=65.79 E-value=2.6 Score=47.79 Aligned_cols=27 Identities=22% Similarity=0.243 Sum_probs=23.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.||||||+..+.+...+
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 457899999999999999999887654
No 456
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=65.76 E-value=2.6 Score=50.01 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.3
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..+.+.|.|+||||||+..++|.-.+.
T Consensus 27 ~Ge~~~llGpsGsGKSTLLr~IaGl~~ 53 (353)
T PRK10851 27 SGQMVALLGPSGSGKTTLLRIIAGLEH 53 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468899999999999999999877654
No 457
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=65.74 E-value=2.7 Score=46.09 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=18.4
Q 000932 296 IIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~y 316 (1221)
|.|+|.+|||||+.++++..+
T Consensus 8 igitG~igsGKSt~~~~l~~~ 28 (208)
T PRK14731 8 VGVTGGIGSGKSTVCRFLAEM 28 (208)
T ss_pred EEEECCCCCCHHHHHHHHHHC
Confidence 668999999999999888764
No 458
>PRK09183 transposase/IS protein; Provisional
Probab=65.72 E-value=2.7 Score=47.80 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=21.3
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.+.|+|.|++|+|||+.+..+...++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999888755443
No 459
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=65.64 E-value=2.7 Score=47.20 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.1
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 356788999999999999999987755
No 460
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=65.64 E-value=2.7 Score=45.98 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=22.5
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
....++|+|++|+|||..+..++..++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~ 45 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAG 45 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456889999999999998888766653
No 461
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=65.59 E-value=2.7 Score=49.84 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=24.1
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
-..|+|+|++|+|||+.++.+-+||-.
T Consensus 38 ~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 38 IGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 367999999999999999999888874
No 462
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=65.57 E-value=2.7 Score=47.11 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=22.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356888999999999999999887654
No 463
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=65.49 E-value=2.7 Score=48.17 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=24.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|++|||||+..+.|+-.+..
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p 59 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLINGLLLP 59 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcccCC
Confidence 35688999999999999999999877643
No 464
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=65.47 E-value=2.7 Score=46.02 Aligned_cols=29 Identities=28% Similarity=0.411 Sum_probs=23.5
Q 000932 293 NQSIIISGESGAGKTETAKFA--MQYLAALG 321 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~i--l~yLa~~~ 321 (1221)
..-++|+|.+|+|||+..|.+ +.+|+.+|
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G 59 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIG 59 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcC
Confidence 367999999999999999987 45666554
No 465
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=65.43 E-value=2.7 Score=47.32 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.3
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..+.+.|.|.||||||+..+++.-.+.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 467899999999999999999877653
No 466
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.43 E-value=2.7 Score=43.48 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=22.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.+|||||+..+.+...+
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345889999999999999888876544
No 467
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=65.31 E-value=2.7 Score=47.04 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=23.2
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.+|||||+..+.+.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 356889999999999999999997654
No 468
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=65.29 E-value=2.7 Score=49.05 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=24.5
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+|+|+|+.|||||+..+.+|.++-.
T Consensus 142 ~~~siii~G~t~sGKTt~lnall~~Ip~ 169 (312)
T COG0630 142 ARKSIIICGGTASGKTTLLNALLDFIPP 169 (312)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHhCCc
Confidence 3578999999999999999999887664
No 469
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=65.28 E-value=2.7 Score=47.65 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=23.1
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.||||||+..+.|.-.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 346889999999999999999987654
No 470
>PRK08181 transposase; Validated
Probab=65.27 E-value=2.7 Score=48.01 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=24.2
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
+.+.|+|.|.+|+|||..+..+...++..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 44679999999999999988888777653
No 471
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=65.27 E-value=2.7 Score=47.95 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=23.5
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|+||||||+..|.|.-.+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567899999999999999998876653
No 472
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=65.26 E-value=2.7 Score=54.42 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=26.0
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
...+.|.|.|+||||||+..|.++..+.-..
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4568999999999999999999988765433
No 473
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=65.26 E-value=2.7 Score=49.93 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.6
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yL 317 (1221)
+..|+|.|++|+|||..++.+...+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 5669999999999999999886654
No 474
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=65.19 E-value=2.8 Score=52.32 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=21.4
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
.+-+|++|.+|+|||++.+.+.+-|-
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45667799999999999998877653
No 475
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=65.18 E-value=2.8 Score=46.54 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=23.0
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..+.+.-.+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3567889999999999999888876554
No 476
>CHL00181 cbbX CbbX; Provisional
Probab=65.15 E-value=2.8 Score=48.41 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.0
Q 000932 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
.|++.|++|+|||+.++.+.+++...+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 389999999999999999988776543
No 477
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.14 E-value=2.8 Score=53.22 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=32.7
Q 000932 273 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
..|+...-..++. ..+..+++||+|++|.|||+.++.+.++|-+.
T Consensus 21 q~~~~~~L~~~i~---~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 21 QEHVVQTLRNAIA---EGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred CHHHHHHHHHHHH---hCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3665543333332 23457899999999999999999999998653
No 478
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=65.13 E-value=2.8 Score=46.94 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.4
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~y 316 (1221)
...+.+.|.|+||||||+..+++...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 35678899999999999999988764
No 479
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=65.11 E-value=2.8 Score=45.42 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.0
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.+...+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999999887664
No 480
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=65.07 E-value=2.8 Score=53.02 Aligned_cols=32 Identities=16% Similarity=0.343 Sum_probs=27.0
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~~ 322 (1221)
...+.+.|.|+||||||+..+.++.++.-.+|
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G 395 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQG 395 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 46689999999999999999999998765443
No 481
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.97 E-value=2.8 Score=46.88 Aligned_cols=26 Identities=35% Similarity=0.311 Sum_probs=22.5
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
..+.+.|.|.+|||||+..+.|...+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 46789999999999999999987654
No 482
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=64.96 E-value=2.8 Score=49.55 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.3
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...|+|+|.+|||||+..+.++.++-
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~ 203 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVA 203 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCC
Confidence 36899999999999999999988875
No 483
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=64.91 E-value=2.8 Score=45.86 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=33.8
Q 000932 296 IIISGESGAGKTETAKFAMQY-LAALGGGSEGIEYEILQTN-----HILEAFGNAKT 346 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~y-La~~~~~~~~ie~~il~sn-----piLEAFGNAkT 346 (1221)
|-|+|-.|||||+.++++-.+ +.-+.. +.+-.++++-+ .|-+.||.--+
T Consensus 5 IglTG~igsGKStva~~~~~~G~~vida--D~v~r~~~~~~~~~~~~i~~~fG~~i~ 59 (201)
T COG0237 5 IGLTGGIGSGKSTVAKILAELGFPVIDA--DDVAREVVEPGGEALQEIAERFGLEIL 59 (201)
T ss_pred EEEecCCCCCHHHHHHHHHHcCCeEEEc--cHHHHHHHhccchHHHHHHHHcCCccc
Confidence 678999999999999988774 333322 24445555544 77888886544
No 484
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.90 E-value=2.8 Score=47.64 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|++|||||+..+.+...+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456788999999999999999987654
No 485
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=64.86 E-value=2.8 Score=44.48 Aligned_cols=28 Identities=25% Similarity=0.552 Sum_probs=22.0
Q 000932 292 VNQSIIISGESGAGKTETAKFA-MQYLAA 319 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~i-l~yLa~ 319 (1221)
.--|+++.|.||||||+..|.+ -+|+..
T Consensus 36 aGECvvL~G~SG~GKStllr~LYaNY~~d 64 (235)
T COG4778 36 AGECVVLHGPSGSGKSTLLRSLYANYLPD 64 (235)
T ss_pred CccEEEeeCCCCCcHHHHHHHHHhccCCC
Confidence 3579999999999999988876 345543
No 486
>PRK14526 adenylate kinase; Provisional
Probab=64.83 E-value=2.8 Score=46.13 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.7
Q 000932 296 IIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yL 317 (1221)
|+|.|.+|||||+.++.+.+.+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999987654
No 487
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=64.76 E-value=2.9 Score=47.90 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=25.7
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~~~ 321 (1221)
...+-+.|.|.||||||+..|+++-.+.-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 61 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLLEAES 61 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 3567889999999999999999988775433
No 488
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.75 E-value=2.9 Score=46.84 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=23.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|.+|||||+..|.|.-.+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAINRMHD 55 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3568899999999999999999877653
No 489
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=64.74 E-value=2.9 Score=49.03 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=22.6
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
....++|+|++|+|||+.++.+.+.+.
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhC
Confidence 346799999999999999998876653
No 490
>PRK06936 type III secretion system ATPase; Provisional
Probab=64.69 E-value=2.9 Score=50.93 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=37.1
Q 000932 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..++.+.-++...+..-.+.|.+.|.|.||+|||+..+.+..+..
T Consensus 143 ~~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~ 187 (439)
T PRK06936 143 ETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAE 187 (439)
T ss_pred CCCCcCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCCC
Confidence 345667777888887778899999999999999999888877654
No 491
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=64.49 E-value=2.9 Score=46.60 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=22.9
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.+|||||+..+++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 356789999999999999999887753
No 492
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.48 E-value=2.9 Score=50.42 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=29.8
Q 000932 283 AYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 283 Ay~~m~~~-~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
.+++++.. +-++++|++|+.|.|||+.++.+-++|-.
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34555544 56789999999999999999999888765
No 493
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.48 E-value=2.9 Score=46.86 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=23.0
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yL 317 (1221)
...+.+.|.|.+|||||+..+.+.--+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 457889999999999999999887654
No 494
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.43 E-value=2.9 Score=52.07 Aligned_cols=53 Identities=17% Similarity=0.355 Sum_probs=37.5
Q 000932 264 TAYRQKVMD----SPHVYAIADTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1221)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~-~~~~nQsIiisGESGAGKTet~K~il~yLa~~ 320 (1221)
.+|+-+..+ .+||-. +..++. ..+-+++++++|..|.|||++++++.+.|-..
T Consensus 8 ~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 445544433 367644 344444 34568899999999999999999999988653
No 495
>PLN02348 phosphoribulokinase
Probab=64.39 E-value=2.9 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.5
Q 000932 295 SIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 295 sIiisGESGAGKTet~K~il~yLa 318 (1221)
-|-|+|-||||||+.++.|.+.|-
T Consensus 51 IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 51 VIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 445799999999999999888775
No 496
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=64.29 E-value=3 Score=47.30 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=23.0
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...+.+.|.|++|||||+..+.|.--+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 58 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3568899999999999999888865543
No 497
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=64.24 E-value=3 Score=47.77 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=21.1
Q 000932 296 IIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 296 IiisGESGAGKTet~K~il~yLa~ 319 (1221)
|||+|-.|||||+.++.|.+||..
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHh
Confidence 899999999999999999999987
No 498
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=64.22 E-value=3 Score=49.89 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.3
Q 000932 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 293 nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
...|++.|.+|+|||+++..+..+++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999988877654
No 499
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=64.19 E-value=3 Score=47.66 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.8
Q 000932 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1221)
Q Consensus 291 ~~nQsIiisGESGAGKTet~K~il~yLa~ 319 (1221)
...+.+.|.|.+|||||+..+.+...+..
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTARLIDGLFEE 59 (277)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 45788999999999999999999876653
No 500
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.15 E-value=3 Score=47.06 Aligned_cols=27 Identities=30% Similarity=0.286 Sum_probs=23.2
Q 000932 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1221)
Q Consensus 292 ~nQsIiisGESGAGKTet~K~il~yLa 318 (1221)
..+.+.|.|.+|||||+..|.|.-.+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 32 RNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 468899999999999999999987543
Done!