Query 000934
Match_columns 1219
No_of_seqs 334 out of 1740
Neff 9.6
Searched_HMMs 46136
Date Tue Apr 2 00:52:57 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1824 TATA-binding protein-i 100.0 5E-213 1E-217 1776.7 109.2 1207 1-1219 1-1219(1233)
2 KOG1824 TATA-binding protein-i 100.0 2E-45 4.4E-50 417.6 74.2 985 8-1095 51-1187(1233)
3 KOG2171 Karyopherin (importin) 100.0 1.1E-44 2.4E-49 427.7 77.5 948 1-1156 1-1028(1075)
4 PF08623 TIP120: TATA-binding 100.0 2.2E-49 4.7E-54 381.5 14.7 167 1039-1206 1-169 (169)
5 KOG2023 Nuclear transport rece 100.0 7.2E-37 1.6E-41 336.7 46.1 672 4-759 13-774 (885)
6 KOG2171 Karyopherin (importin) 100.0 2.8E-32 6.1E-37 322.9 80.8 883 14-1055 47-1021(1075)
7 KOG2023 Nuclear transport rece 100.0 3.5E-29 7.6E-34 276.4 49.0 746 51-1032 18-854 (885)
8 KOG1241 Karyopherin (importin) 100.0 6.7E-28 1.5E-32 271.5 55.0 677 17-761 50-812 (859)
9 KOG1241 Karyopherin (importin) 99.9 9E-24 2E-28 238.4 44.0 598 1-677 169-816 (859)
10 COG5215 KAP95 Karyopherin (imp 99.9 3.5E-18 7.5E-23 186.6 59.1 604 16-687 53-725 (858)
11 KOG0213 Splicing factor 3b, su 99.9 8.9E-18 1.9E-22 188.1 59.1 741 36-883 354-1143(1172)
12 COG5215 KAP95 Karyopherin (imp 99.9 1E-16 2.3E-21 175.2 51.1 646 57-773 16-724 (858)
13 PLN03200 cellulose synthase-in 99.8 1.8E-14 3.8E-19 186.5 71.6 623 5-715 190-861 (2102)
14 KOG0213 Splicing factor 3b, su 99.8 2.9E-15 6.4E-20 168.3 52.9 554 100-715 492-1066(1172)
15 KOG1242 Protein containing ada 99.8 1.4E-17 3E-22 187.9 34.4 466 37-584 87-557 (569)
16 PLN03200 cellulose synthase-in 99.8 1.1E-13 2.5E-18 179.1 74.5 783 4-882 13-860 (2102)
17 COG5181 HSH155 U2 snRNP splice 99.8 2.3E-15 4.9E-20 166.0 46.2 723 5-880 169-945 (975)
18 COG5181 HSH155 U2 snRNP splice 99.7 2.7E-13 5.9E-18 149.9 45.8 729 178-1046 176-958 (975)
19 KOG1242 Protein containing ada 99.7 8.1E-14 1.8E-18 157.8 38.9 520 56-665 27-557 (569)
20 KOG0915 Uncharacterized conser 99.7 2.5E-12 5.4E-17 156.6 46.4 600 4-668 818-1465(1702)
21 KOG0915 Uncharacterized conser 99.6 5.8E-12 1.3E-16 153.5 42.4 576 42-713 814-1426(1702)
22 PF01602 Adaptin_N: Adaptin N 99.5 1E-10 2.3E-15 143.8 43.8 473 9-589 47-522 (526)
23 KOG0212 Uncharacterized conser 99.5 3.4E-10 7.4E-15 125.4 38.2 396 50-503 4-410 (675)
24 KOG1248 Uncharacterized conser 99.4 4.3E-07 9.3E-12 110.4 61.2 711 6-761 140-899 (1176)
25 PTZ00429 beta-adaptin; Provisi 99.4 1.1E-08 2.5E-13 124.8 47.4 465 7-586 71-541 (746)
26 PF01602 Adaptin_N: Adaptin N 99.4 4.3E-09 9.2E-14 129.6 44.4 438 169-712 78-522 (526)
27 KOG0212 Uncharacterized conser 99.4 2.4E-09 5.1E-14 118.9 35.0 390 177-632 7-408 (675)
28 KOG1248 Uncharacterized conser 99.3 4.1E-07 8.8E-12 110.6 54.3 631 13-715 233-899 (1176)
29 KOG1943 Beta-tubulin folding c 99.3 1.4E-07 3E-12 113.1 47.6 480 166-714 337-881 (1133)
30 KOG0211 Protein phosphatase 2A 99.3 2.2E-08 4.8E-13 120.7 39.1 542 82-713 119-663 (759)
31 KOG1992 Nuclear export recepto 99.3 1E-06 2.3E-11 102.6 49.7 604 16-742 51-736 (960)
32 KOG1991 Nuclear transport rece 99.3 1.1E-05 2.4E-10 96.7 59.3 377 189-625 391-795 (1010)
33 PTZ00429 beta-adaptin; Provisi 99.3 5E-07 1.1E-11 110.7 50.2 283 370-713 256-545 (746)
34 KOG1020 Sister chromatid cohes 99.2 6.1E-06 1.3E-10 102.3 57.2 661 3-741 580-1388(1692)
35 PRK13800 putative oxidoreducta 99.2 1.5E-09 3.2E-14 139.4 25.4 274 47-452 622-895 (897)
36 KOG1943 Beta-tubulin folding c 99.1 3.4E-06 7.3E-11 101.6 47.9 506 42-673 337-882 (1133)
37 PRK13800 putative oxidoreducta 99.1 3E-09 6.5E-14 136.6 23.5 275 4-395 621-895 (897)
38 KOG0211 Protein phosphatase 2A 99.1 3.2E-07 6.9E-12 110.9 34.6 541 44-673 119-665 (759)
39 PRK09687 putative lyase; Provi 99.0 1.8E-08 3.8E-13 110.3 21.8 256 170-538 23-279 (280)
40 KOG1991 Nuclear transport rece 99.0 0.00021 4.4E-09 86.2 69.3 248 51-362 9-276 (1010)
41 KOG2274 Predicted importin 9 [ 98.9 0.00044 9.4E-09 82.4 61.0 612 49-766 7-652 (1005)
42 PRK09687 putative lyase; Provi 98.9 5.3E-08 1.2E-12 106.6 18.7 230 4-279 23-278 (280)
43 KOG1020 Sister chromatid cohes 98.9 0.00095 2E-08 83.8 64.9 662 420-1164 810-1533(1692)
44 KOG1993 Nuclear transport rece 98.9 0.00014 3.1E-09 84.9 45.6 235 422-672 522-769 (978)
45 PF10508 Proteasom_PSMB: Prote 98.9 1.3E-05 2.8E-10 96.2 38.8 388 5-499 4-420 (503)
46 PF12460 MMS19_C: RNAPII trans 98.9 6.5E-06 1.4E-10 96.7 35.5 380 7-475 2-413 (415)
47 KOG0166 Karyopherin (importin) 98.9 4.3E-07 9.2E-12 103.6 24.1 358 86-542 68-437 (514)
48 KOG0166 Karyopherin (importin) 98.8 6.1E-07 1.3E-11 102.3 24.8 352 6-399 68-436 (514)
49 KOG2274 Predicted importin 9 [ 98.8 0.0012 2.6E-08 78.8 50.9 195 469-715 491-690 (1005)
50 KOG1060 Vesicle coat complex A 98.8 8.1E-05 1.8E-09 86.8 39.1 484 51-671 40-532 (968)
51 PF10508 Proteasom_PSMB: Prote 98.7 2.2E-05 4.8E-10 94.2 33.5 347 9-400 43-421 (503)
52 KOG1992 Nuclear export recepto 98.6 0.0033 7.2E-08 74.4 49.3 586 47-716 7-670 (960)
53 KOG1060 Vesicle coat complex A 98.6 0.00011 2.4E-09 85.8 34.0 192 558-776 320-512 (968)
54 KOG1062 Vesicle coat complex A 98.6 0.00049 1.1E-08 81.1 39.2 426 42-595 103-548 (866)
55 COG5240 SEC21 Vesicle coat com 98.6 0.0022 4.7E-08 72.5 41.7 465 169-712 64-553 (898)
56 KOG1967 DNA repair/transcripti 98.6 0.0048 1E-07 74.1 62.4 193 832-1029 791-1018(1030)
57 PF12348 CLASP_N: CLASP N term 98.6 1.7E-06 3.8E-11 93.2 16.8 182 340-544 18-209 (228)
58 PF12348 CLASP_N: CLASP N term 98.5 2.9E-06 6.3E-11 91.5 18.2 185 97-290 20-213 (228)
59 KOG4535 HEAT and armadillo rep 98.5 0.00013 2.9E-09 80.2 29.5 499 135-669 55-600 (728)
60 PF12460 MMS19_C: RNAPII trans 98.5 4E-05 8.6E-10 90.1 28.2 253 39-303 128-414 (415)
61 KOG0168 Putative ubiquitin fus 98.5 0.00011 2.3E-09 86.5 29.9 434 4-467 167-640 (1051)
62 KOG0891 DNA-dependent protein 98.4 0.00058 1.3E-08 92.2 37.5 567 466-1088 132-784 (2341)
63 KOG1059 Vesicle coat complex A 98.4 0.00045 9.8E-09 80.1 30.8 236 639-899 140-383 (877)
64 KOG0414 Chromosome condensatio 98.4 0.02 4.3E-07 71.0 69.7 156 854-1055 920-1083(1251)
65 PF12755 Vac14_Fab1_bd: Vacuol 98.3 6.7E-06 1.4E-10 73.5 10.6 93 271-398 3-95 (97)
66 KOG1061 Vesicle coat complex A 98.3 0.00046 1E-08 81.5 28.2 403 5-497 87-526 (734)
67 KOG4224 Armadillo repeat prote 98.2 0.00013 2.9E-09 77.5 20.7 343 6-400 87-447 (550)
68 KOG1059 Vesicle coat complex A 98.2 0.0051 1.1E-07 71.8 34.2 290 42-399 105-401 (877)
69 KOG4224 Armadillo repeat prote 98.2 0.00025 5.4E-09 75.5 21.4 392 209-675 86-496 (550)
70 KOG1062 Vesicle coat complex A 98.2 0.022 4.7E-07 67.8 38.6 447 170-707 107-574 (866)
71 PF12755 Vac14_Fab1_bd: Vacuol 98.1 1.6E-05 3.5E-10 71.1 9.9 77 226-305 2-78 (97)
72 KOG1240 Protein kinase contain 98.1 0.00015 3.3E-09 88.5 19.9 279 20-361 439-728 (1431)
73 KOG2021 Nuclear mRNA export fa 98.1 0.051 1.1E-06 64.1 48.8 577 60-675 104-767 (980)
74 KOG4653 Uncharacterized conser 98.1 0.00032 7E-09 83.0 20.9 219 142-398 740-963 (982)
75 KOG4535 HEAT and armadillo rep 98.0 0.041 9E-07 61.4 37.1 532 12-654 4-624 (728)
76 KOG1820 Microtubule-associated 98.0 0.0011 2.3E-08 81.7 25.9 367 167-595 60-447 (815)
77 KOG0168 Putative ubiquitin fus 98.0 0.011 2.5E-07 70.2 31.9 255 171-478 168-436 (1051)
78 KOG1967 DNA repair/transcripti 98.0 0.0044 9.6E-08 74.4 28.3 158 366-538 863-1021(1030)
79 KOG2032 Uncharacterized conser 97.9 0.014 3.1E-07 65.7 29.9 154 556-715 254-413 (533)
80 COG5096 Vesicle coat complex, 97.9 0.02 4.4E-07 69.5 33.3 186 5-204 93-279 (757)
81 KOG2259 Uncharacterized conser 97.9 0.00067 1.5E-08 78.0 19.6 291 167-502 195-514 (823)
82 KOG0891 DNA-dependent protein 97.9 0.31 6.8E-06 67.0 54.4 535 7-628 137-761 (2341)
83 PF12717 Cnd1: non-SMC mitotic 97.9 8.4E-05 1.8E-09 76.1 11.3 134 945-1094 2-139 (178)
84 KOG4653 Uncharacterized conser 97.9 0.002 4.4E-08 76.6 23.1 223 6-277 729-958 (982)
85 COG5064 SRP1 Karyopherin (impo 97.8 0.0017 3.7E-08 68.7 19.1 215 61-284 53-273 (526)
86 PF03378 CAS_CSE1: CAS/CSE pro 97.8 0.028 6.2E-07 65.6 31.4 217 80-305 22-252 (435)
87 PF05004 IFRD: Interferon-rela 97.8 0.0018 3.9E-08 72.2 20.8 192 476-675 51-260 (309)
88 KOG0946 ER-Golgi vesicle-tethe 97.8 0.034 7.3E-07 65.9 31.1 156 185-400 38-196 (970)
89 KOG1240 Protein kinase contain 97.8 0.0059 1.3E-07 75.3 25.7 273 429-715 428-726 (1431)
90 KOG2956 CLIP-associating prote 97.8 0.002 4.3E-08 71.8 19.5 190 4-204 286-482 (516)
91 KOG2956 CLIP-associating prote 97.7 0.0029 6.3E-08 70.5 20.4 211 83-304 285-499 (516)
92 KOG1820 Microtubule-associated 97.7 0.00055 1.2E-08 84.2 16.2 207 249-515 251-459 (815)
93 COG5656 SXM1 Importin, protein 97.7 0.2 4.4E-06 59.3 43.2 169 125-302 406-587 (970)
94 PF13513 HEAT_EZ: HEAT-like re 97.7 7E-05 1.5E-09 59.8 5.3 55 343-397 1-55 (55)
95 PF08623 TIP120: TATA-binding 97.7 3.2E-05 6.9E-10 75.9 3.9 125 964-1095 8-148 (169)
96 KOG2259 Uncharacterized conser 97.6 0.0036 7.8E-08 72.3 19.5 100 375-497 203-308 (823)
97 KOG1061 Vesicle coat complex A 97.6 0.14 3.1E-06 61.2 32.7 438 40-585 80-522 (734)
98 KOG1993 Nuclear transport rece 97.6 0.09 2E-06 62.5 29.7 317 166-539 480-810 (978)
99 KOG1822 Uncharacterized conser 97.5 0.84 1.8E-05 60.0 39.0 123 38-162 867-992 (2067)
100 PF03378 CAS_CSE1: CAS/CSE pro 97.5 0.0063 1.4E-07 70.9 19.3 238 206-498 24-271 (435)
101 PF14500 MMS19_N: Dos2-interac 97.4 0.13 2.8E-06 55.8 27.8 240 142-433 12-257 (262)
102 KOG2032 Uncharacterized conser 97.4 0.031 6.8E-07 63.0 23.2 145 384-545 231-375 (533)
103 KOG2062 26S proteasome regulat 97.4 0.47 1E-05 56.3 40.8 272 834-1164 398-684 (929)
104 COG5240 SEC21 Vesicle coat com 97.4 0.41 8.9E-06 55.0 41.4 480 42-629 61-554 (898)
105 COG5656 SXM1 Importin, protein 97.4 0.57 1.2E-05 55.7 52.4 257 345-631 476-758 (970)
106 PF08506 Cse1: Cse1; InterPro 97.4 0.082 1.8E-06 60.4 26.4 256 285-585 72-369 (370)
107 KOG1078 Vesicle coat complex C 97.3 0.64 1.4E-05 55.8 33.8 100 600-709 242-343 (865)
108 PF05804 KAP: Kinesin-associat 97.3 0.04 8.7E-07 67.5 24.9 340 45-457 289-650 (708)
109 KOG1525 Sister chromatid cohes 97.3 1.1 2.5E-05 58.3 46.0 341 39-456 41-405 (1266)
110 PF11865 DUF3385: Domain of un 97.3 0.0017 3.6E-08 64.7 10.7 113 167-283 7-157 (160)
111 PF05804 KAP: Kinesin-associat 97.3 0.91 2E-05 56.1 39.7 363 189-631 268-650 (708)
112 PF05004 IFRD: Interferon-rela 97.3 0.026 5.5E-07 63.1 20.5 195 377-594 50-260 (309)
113 KOG0392 SNF2 family DNA-depend 97.2 1.1 2.4E-05 56.5 42.5 228 5-242 78-328 (1549)
114 KOG2062 26S proteasome regulat 97.2 0.77 1.7E-05 54.6 40.9 108 940-1053 564-671 (929)
115 PF14500 MMS19_N: Dos2-interac 97.2 0.051 1.1E-06 58.9 21.8 237 50-301 3-256 (262)
116 PF12717 Cnd1: non-SMC mitotic 97.2 0.0075 1.6E-07 61.8 14.7 110 343-475 2-112 (178)
117 COG1413 FOG: HEAT repeat [Ener 97.2 0.036 7.7E-07 63.7 21.8 187 5-237 44-240 (335)
118 KOG2021 Nuclear mRNA export fa 97.1 0.99 2.1E-05 53.8 53.0 423 185-652 105-585 (980)
119 PF12231 Rif1_N: Rap1-interact 97.1 0.18 4E-06 58.2 26.5 262 13-283 2-303 (372)
120 PF13251 DUF4042: Domain of un 97.1 0.0052 1.1E-07 61.9 11.9 151 270-458 2-176 (182)
121 PF05918 API5: Apoptosis inhib 97.1 0.17 3.7E-06 59.9 25.5 293 342-674 35-343 (556)
122 TIGR02270 conserved hypothetic 97.1 0.024 5.2E-07 65.5 18.3 150 6-198 56-206 (410)
123 KOG4524 Uncharacterized conser 97.0 0.23 4.9E-06 60.9 26.1 113 149-261 568-684 (1014)
124 PF13513 HEAT_EZ: HEAT-like re 97.0 0.00084 1.8E-08 53.5 4.1 55 143-197 1-55 (55)
125 KOG1058 Vesicle coat complex C 97.0 1.3 2.9E-05 52.9 34.3 87 166-258 95-181 (948)
126 PF04826 Arm_2: Armadillo-like 97.0 0.029 6.4E-07 60.3 16.9 190 3-204 11-210 (254)
127 PF12719 Cnd3: Nuclear condens 97.0 0.29 6.4E-06 54.8 25.8 188 149-375 3-202 (298)
128 PF05918 API5: Apoptosis inhib 97.0 0.085 1.8E-06 62.4 21.5 265 18-304 36-319 (556)
129 KOG1058 Vesicle coat complex C 96.9 1.5 3.2E-05 52.5 32.6 147 424-594 315-466 (948)
130 PF08506 Cse1: Cse1; InterPro 96.9 0.46 9.9E-06 54.5 27.0 209 185-443 111-363 (370)
131 PLN03076 ARF guanine nucleotid 96.9 0.21 4.5E-06 67.5 27.5 295 6-305 1138-1512(1780)
132 PF02985 HEAT: HEAT repeat; I 96.9 0.001 2.2E-08 45.6 3.5 30 47-76 1-30 (31)
133 COG5064 SRP1 Karyopherin (impo 96.9 0.0095 2E-07 63.3 11.9 272 429-714 160-443 (526)
134 PF13251 DUF4042: Domain of un 96.9 0.022 4.7E-07 57.5 13.8 161 344-542 1-175 (182)
135 KOG0946 ER-Golgi vesicle-tethe 96.9 0.75 1.6E-05 55.1 27.9 199 80-286 18-244 (970)
136 cd00020 ARM Armadillo/beta-cat 96.9 0.0072 1.6E-07 57.3 10.1 110 252-398 8-119 (120)
137 PF13646 HEAT_2: HEAT repeats; 96.8 0.0065 1.4E-07 54.0 8.9 88 129-235 1-88 (88)
138 KOG0567 HEAT repeat-containing 96.8 0.18 4E-06 52.5 19.9 247 5-282 4-279 (289)
139 cd00256 VATPase_H VATPase_H, r 96.8 1.5 3.2E-05 50.8 29.5 102 142-244 67-178 (429)
140 cd00020 ARM Armadillo/beta-cat 96.8 0.0059 1.3E-07 57.9 9.0 107 171-282 8-119 (120)
141 COG1413 FOG: HEAT repeat [Ener 96.8 0.037 8E-07 63.6 16.9 183 813-1033 44-240 (335)
142 KOG1078 Vesicle coat complex C 96.8 2.1 4.5E-05 51.6 35.5 281 373-714 248-532 (865)
143 KOG0392 SNF2 family DNA-depend 96.8 0.077 1.7E-06 66.2 19.6 224 56-286 659-928 (1549)
144 TIGR02270 conserved hypothetic 96.8 0.05 1.1E-06 63.0 17.4 187 854-1095 87-297 (410)
145 PF01603 B56: Protein phosphat 96.7 0.46 1E-05 55.6 25.0 305 18-366 40-378 (409)
146 PF08167 RIX1: rRNA processing 96.7 0.061 1.3E-06 54.1 15.5 132 167-304 22-164 (165)
147 KOG4413 26S proteasome regulat 96.6 1.4 3E-05 47.3 29.4 89 190-283 63-157 (524)
148 PF10274 ParcG: Parkin co-regu 96.6 0.024 5.1E-07 56.6 11.5 95 368-477 36-133 (183)
149 PF13646 HEAT_2: HEAT repeats; 96.6 0.012 2.6E-07 52.2 8.6 87 48-154 1-88 (88)
150 KOG2025 Chromosome condensatio 96.5 0.036 7.8E-07 64.9 13.4 163 928-1127 82-253 (892)
151 PF05536 Neurochondrin: Neuroc 96.3 3.9 8.5E-05 49.7 39.4 234 4-243 5-265 (543)
152 PF08167 RIX1: rRNA processing 96.3 0.099 2.1E-06 52.6 14.1 137 422-569 21-164 (165)
153 PF08767 CRM1_C: CRM1 C termin 96.2 0.21 4.7E-06 56.1 18.0 192 385-590 42-243 (319)
154 PF04826 Arm_2: Armadillo-like 96.2 0.053 1.1E-06 58.4 12.3 144 131-283 16-163 (254)
155 KOG2022 Nuclear transport rece 96.2 5.1 0.00011 49.2 56.8 355 339-715 477-868 (982)
156 KOG2022 Nuclear transport rece 96.1 5.2 0.00011 49.1 59.8 172 425-612 461-641 (982)
157 cd00256 VATPase_H VATPase_H, r 96.1 1.1 2.5E-05 51.8 23.1 295 574-884 113-427 (429)
158 PF08064 UME: UME (NUC010) dom 96.1 0.085 1.8E-06 48.5 11.3 76 224-304 29-105 (107)
159 PF10363 DUF2435: Protein of u 96.0 0.064 1.4E-06 47.5 10.0 87 4-96 3-89 (92)
160 PLN03076 ARF guanine nucleotid 96.0 11 0.00024 51.9 43.2 311 345-696 1153-1513(1780)
161 PF10274 ParcG: Parkin co-regu 96.0 0.047 1E-06 54.6 10.1 96 206-306 36-135 (183)
162 PF02985 HEAT: HEAT repeat; I 96.0 0.0089 1.9E-07 40.9 3.4 29 854-882 1-29 (31)
163 smart00802 UME Domain in UVSB 95.9 0.12 2.5E-06 47.3 11.3 91 209-304 12-105 (107)
164 KOG2025 Chromosome condensatio 95.8 1.3 2.8E-05 52.6 21.8 246 166-496 40-291 (892)
165 PF08064 UME: UME (NUC010) dom 95.8 0.098 2.1E-06 48.1 10.4 98 162-260 3-105 (107)
166 PF04118 Dopey_N: Dopey, N-ter 95.5 0.92 2E-05 50.2 18.6 188 467-669 53-251 (307)
167 PF12719 Cnd3: Nuclear condens 95.5 0.77 1.7E-05 51.5 18.6 132 532-674 3-145 (298)
168 PF12054 DUF3535: Domain of un 95.4 2.3 5E-05 50.2 22.7 77 61-138 102-179 (441)
169 PF12231 Rif1_N: Rap1-interact 95.4 6.9 0.00015 45.3 31.2 283 385-715 8-304 (372)
170 KOG1949 Uncharacterized conser 95.2 2.6 5.7E-05 50.0 21.1 181 13-201 183-373 (1005)
171 PF10521 DUF2454: Protein of u 95.1 0.58 1.3E-05 51.8 15.8 157 103-262 95-276 (282)
172 KOG2137 Protein kinase [Signal 95.0 3.8 8.3E-05 49.4 22.4 272 4-302 239-515 (700)
173 PF13001 Ecm29: Proteasome sta 95.0 7.2 0.00016 47.1 25.7 94 122-219 18-113 (501)
174 smart00802 UME Domain in UVSB 94.7 0.31 6.6E-06 44.6 10.0 98 162-260 3-105 (107)
175 KOG0413 Uncharacterized conser 94.7 16 0.00034 45.4 41.2 126 577-715 946-1074(1529)
176 KOG1949 Uncharacterized conser 94.6 3.7 8E-05 48.8 20.4 151 514-671 176-330 (1005)
177 KOG2213 Apoptosis inhibitor 5/ 94.6 1.2 2.6E-05 49.2 15.6 55 37-94 52-106 (460)
178 KOG2973 Uncharacterized conser 94.6 8.1 0.00018 41.7 21.7 271 4-286 3-318 (353)
179 PF10521 DUF2454: Protein of u 94.6 0.77 1.7E-05 50.8 15.0 152 459-615 110-277 (282)
180 KOG1243 Protein kinase [Genera 94.5 0.15 3.2E-06 60.6 9.3 223 44-286 291-518 (690)
181 KOG2549 Transcription initiati 94.5 0.86 1.9E-05 52.7 15.0 59 340-398 309-369 (576)
182 KOG2933 Uncharacterized conser 94.4 0.94 2E-05 48.7 14.1 125 169-300 87-214 (334)
183 COG5657 CSE1 CAS/CSE protein i 94.3 19 0.0004 44.8 39.5 99 16-116 50-155 (947)
184 COG5096 Vesicle coat complex, 94.3 19 0.00041 44.8 38.2 143 5-159 39-196 (757)
185 smart00638 LPD_N Lipoprotein N 94.3 7.7 0.00017 48.2 24.7 115 169-293 392-519 (574)
186 COG5116 RPN2 26S proteasome re 94.0 1.5 3.3E-05 50.5 15.4 107 940-1053 561-668 (926)
187 PF11865 DUF3385: Domain of un 93.9 0.69 1.5E-05 46.1 11.6 77 463-541 80-157 (160)
188 KOG2933 Uncharacterized conser 93.9 1.4 3E-05 47.4 14.0 164 343-530 102-266 (334)
189 PF11864 DUF3384: Domain of un 93.8 19 0.00042 43.1 41.5 430 143-669 4-463 (464)
190 KOG2160 Armadillo/beta-catenin 93.8 4.2 9E-05 45.1 18.0 181 99-286 98-285 (342)
191 KOG2137 Protein kinase [Signal 93.8 3.3 7.1E-05 49.9 18.4 245 487-758 290-537 (700)
192 KOG2081 Nuclear transport regu 93.7 18 0.0004 42.4 35.7 357 21-400 35-458 (559)
193 PF13001 Ecm29: Proteasome sta 93.5 22 0.00048 43.0 25.7 355 4-402 23-446 (501)
194 KOG2160 Armadillo/beta-catenin 93.3 6.7 0.00015 43.5 18.5 184 14-200 93-283 (342)
195 KOG1243 Protein kinase [Genera 93.2 0.78 1.7E-05 54.7 12.1 186 509-714 327-515 (690)
196 KOG2140 Uncharacterized conser 93.2 13 0.00029 42.8 20.8 96 119-220 230-328 (739)
197 KOG0567 HEAT repeat-containing 93.0 5.3 0.00011 42.2 16.3 194 371-628 68-278 (289)
198 KOG2149 Uncharacterized conser 93.0 1 2.2E-05 50.4 11.9 122 342-478 71-192 (393)
199 PF01347 Vitellogenin_N: Lipop 92.7 8.9 0.00019 48.2 21.8 114 169-292 430-562 (618)
200 KOG2149 Uncharacterized conser 92.7 1.2 2.6E-05 49.9 11.9 114 429-545 61-174 (393)
201 COG5095 TAF6 Transcription ini 92.6 2.4 5.1E-05 45.0 13.1 135 225-397 213-357 (450)
202 KOG2081 Nuclear transport regu 92.4 28 0.00061 41.0 38.4 150 505-674 333-497 (559)
203 KOG1077 Vesicle coat complex A 92.3 32 0.00069 41.5 39.5 299 169-543 110-435 (938)
204 KOG0414 Chromosome condensatio 92.3 44 0.00095 43.0 55.9 154 965-1148 919-1078(1251)
205 PF01603 B56: Protein phosphat 92.2 5.6 0.00012 46.6 17.6 226 339-591 100-370 (409)
206 KOG1517 Guanine nucleotide bin 92.2 5.3 0.00012 49.8 17.2 180 21-203 487-675 (1387)
207 cd08050 TAF6 TATA Binding Prot 91.9 3.1 6.7E-05 47.4 14.6 95 486-588 233-337 (343)
208 COG5218 YCG1 Chromosome conden 91.9 8.1 0.00017 45.1 17.3 122 108-233 71-193 (885)
209 PF12074 DUF3554: Domain of un 91.9 18 0.00038 41.5 21.1 98 113-218 12-113 (339)
210 KOG0413 Uncharacterized conser 91.4 47 0.001 41.6 58.3 104 945-1054 983-1090(1529)
211 KOG1293 Proteins containing ar 91.4 39 0.00084 40.6 22.5 139 142-286 390-536 (678)
212 KOG2549 Transcription initiati 91.3 5.3 0.00012 46.5 15.3 148 428-589 209-368 (576)
213 PF10363 DUF2435: Protein of u 91.0 2.1 4.5E-05 38.0 9.4 71 142-213 16-86 (92)
214 COG5218 YCG1 Chromosome conden 90.9 39 0.00085 39.8 38.0 170 866-1040 467-646 (885)
215 cd08050 TAF6 TATA Binding Prot 90.8 2 4.4E-05 48.9 11.6 147 80-237 174-338 (343)
216 PF12074 DUF3554: Domain of un 90.7 23 0.0005 40.5 20.4 232 18-258 1-254 (339)
217 PF01347 Vitellogenin_N: Lipop 90.3 46 0.001 41.8 24.6 123 224-392 449-582 (618)
218 COG5116 RPN2 26S proteasome re 90.0 3.1 6.7E-05 48.1 11.8 151 51-221 521-675 (926)
219 KOG1517 Guanine nucleotide bin 90.0 2.8 6.2E-05 52.1 12.2 159 15-201 568-734 (1387)
220 KOG1837 Uncharacterized conser 89.9 15 0.00033 48.3 18.9 87 185-277 1519-1605(1621)
221 KOG0803 Predicted E3 ubiquitin 89.7 22 0.00048 47.1 20.6 105 172-280 43-150 (1312)
222 PF11698 V-ATPase_H_C: V-ATPas 89.5 0.45 9.7E-06 44.0 4.1 68 6-75 45-115 (119)
223 PF08767 CRM1_C: CRM1 C termin 89.3 5.4 0.00012 45.0 13.4 168 344-526 42-228 (319)
224 KOG4413 26S proteasome regulat 89.0 38 0.00083 36.8 29.4 100 612-714 51-157 (524)
225 KOG0889 Histone acetyltransfer 88.9 1.5E+02 0.0032 43.4 48.8 282 427-714 985-1306(3550)
226 KOG1077 Vesicle coat complex A 88.8 64 0.0014 39.1 38.4 272 380-714 158-433 (938)
227 KOG1848 Uncharacterized conser 88.4 47 0.001 43.4 21.3 226 53-283 849-1132(1610)
228 PF04931 DNA_pol_phi: DNA poly 88.3 58 0.0013 42.0 23.4 47 249-305 587-633 (784)
229 smart00638 LPD_N Lipoprotein N 88.1 67 0.0014 39.9 23.4 145 142-309 410-562 (574)
230 PF07571 DUF1546: Protein of u 88.0 1.7 3.8E-05 38.6 6.7 58 340-397 17-76 (92)
231 PF14664 RICTOR_N: Rapamycin-i 87.8 26 0.00056 40.4 17.8 209 861-1095 33-270 (371)
232 KOG0889 Histone acetyltransfer 87.6 1.7E+02 0.0037 42.7 65.9 160 419-592 626-797 (3550)
233 KOG3723 PH domain protein Melt 87.5 10 0.00022 43.9 13.7 97 1027-1151 183-284 (851)
234 KOG1525 Sister chromatid cohes 87.5 1.2E+02 0.0025 40.7 52.4 253 428-702 183-441 (1266)
235 COG5095 TAF6 Transcription ini 87.5 26 0.00057 37.5 15.7 181 70-261 183-382 (450)
236 PF10350 DUF2428: Putative dea 87.1 29 0.00063 37.7 17.0 172 342-524 60-252 (255)
237 PF08389 Xpo1: Exportin 1-like 86.6 2.6 5.5E-05 41.5 8.0 130 61-194 3-148 (148)
238 PF12333 Ipi1_N: Rix1 complex 86.6 1.9 4.1E-05 39.3 6.2 62 242-306 2-64 (102)
239 KOG1789 Endocytosis protein RM 86.2 1.1E+02 0.0024 39.0 22.4 179 1001-1202 1998-2190(2235)
240 PF03224 V-ATPase_H_N: V-ATPas 86.0 43 0.00093 37.8 18.3 117 142-260 70-200 (312)
241 PF08389 Xpo1: Exportin 1-like 85.4 3 6.6E-05 41.0 7.8 116 185-305 3-136 (148)
242 KOG1851 Uncharacterized conser 85.3 1.5E+02 0.0032 39.8 33.2 116 483-608 1540-1655(1710)
243 KOG1293 Proteins containing ar 85.2 97 0.0021 37.5 32.9 111 429-542 422-534 (678)
244 PF04931 DNA_pol_phi: DNA poly 85.0 3.9 8.5E-05 52.5 10.4 33 206-240 587-619 (784)
245 PF08569 Mo25: Mo25-like; Int 84.7 77 0.0017 35.9 22.7 178 343-542 90-284 (335)
246 PF03224 V-ATPase_H_N: V-ATPas 84.5 39 0.00084 38.2 17.1 212 6-225 60-299 (312)
247 PF08569 Mo25: Mo25-like; Int 84.1 74 0.0016 36.0 18.6 200 371-593 77-285 (335)
248 KOG2011 Sister chromatid cohes 83.9 83 0.0018 40.6 20.3 217 924-1167 279-509 (1048)
249 PF04388 Hamartin: Hamartin pr 83.3 12 0.00025 46.9 13.0 81 225-307 83-164 (668)
250 PF12530 DUF3730: Protein of u 83.1 70 0.0015 34.3 22.2 150 210-400 2-152 (234)
251 PF11864 DUF3384: Domain of un 82.6 1.2E+02 0.0026 36.5 35.6 261 142-455 42-329 (464)
252 KOG1837 Uncharacterized conser 82.0 7.6 0.00017 50.8 10.7 94 946-1039 1519-1615(1621)
253 PF14225 MOR2-PAG1_C: Cell mor 81.8 84 0.0018 34.2 18.8 145 127-286 111-257 (262)
254 KOG3961 Uncharacterized conser 81.6 3.6 7.8E-05 41.6 6.1 89 965-1053 114-205 (262)
255 KOG0803 Predicted E3 ubiquitin 80.6 48 0.001 44.2 17.3 113 424-540 39-152 (1312)
256 PF12830 Nipped-B_C: Sister ch 80.1 13 0.00027 38.4 10.0 81 965-1049 8-88 (187)
257 KOG2122 Beta-catenin-binding p 79.5 2.3E+02 0.005 37.9 25.1 100 343-457 365-468 (2195)
258 KOG1851 Uncharacterized conser 79.4 2.4E+02 0.0052 38.0 31.0 140 340-502 1538-1681(1710)
259 KOG2122 Beta-catenin-binding p 79.3 2.3E+02 0.0051 37.8 23.1 73 602-674 529-603 (2195)
260 PF05536 Neurochondrin: Neuroc 77.8 1.8E+02 0.0039 35.6 36.6 135 143-286 71-216 (543)
261 PF03542 Tuberin: Tuberin; In 77.7 1.3E+02 0.0029 34.3 17.8 164 130-305 144-329 (356)
262 PF05327 RRN3: RNA polymerase 77.3 1.9E+02 0.0041 35.7 27.3 138 160-303 63-213 (563)
263 PF11698 V-ATPase_H_C: V-ATPas 76.8 12 0.00026 34.9 7.6 58 142-199 57-115 (119)
264 PF04118 Dopey_N: Dopey, N-ter 76.7 1.3E+02 0.0029 33.5 19.4 83 128-212 98-181 (307)
265 PF12333 Ipi1_N: Rix1 complex 76.5 5.3 0.00011 36.4 5.3 62 459-522 2-63 (102)
266 PF05997 Nop52: Nucleolar prot 76.4 1.1E+02 0.0023 32.4 18.5 87 8-94 4-92 (217)
267 PF11640 TAN: Telomere-length 75.7 11 0.00024 37.5 7.8 56 1-56 1-58 (155)
268 PF12765 Cohesin_HEAT: HEAT re 75.6 3.6 7.9E-05 30.4 3.2 41 351-393 1-41 (42)
269 KOG3961 Uncharacterized conser 75.6 16 0.00034 37.3 8.5 93 206-303 112-207 (262)
270 PF14911 MMS22L_C: S-phase gen 75.0 1.6E+02 0.0035 33.7 25.4 242 166-480 65-349 (373)
271 PF07539 DRIM: Down-regulated 74.8 14 0.0003 35.9 7.9 48 44-95 15-62 (141)
272 PF00514 Arm: Armadillo/beta-c 74.8 4.5 9.6E-05 29.6 3.6 29 46-74 12-40 (41)
273 PF08146 BP28CT: BP28CT (NUC21 72.8 75 0.0016 31.4 12.7 78 185-262 36-119 (153)
274 PF07571 DUF1546: Protein of u 71.7 15 0.00031 32.8 6.7 58 142-199 19-78 (92)
275 PF12830 Nipped-B_C: Sister ch 71.7 19 0.00041 37.1 8.6 70 4-78 8-77 (187)
276 KOG4524 Uncharacterized conser 71.0 3E+02 0.0066 35.1 42.9 93 510-608 801-894 (1014)
277 PF00514 Arm: Armadillo/beta-c 71.0 6.5 0.00014 28.7 3.7 28 854-881 13-40 (41)
278 KOG0929 Guanine nucleotide exc 70.6 2.3E+02 0.005 38.4 19.3 128 175-305 1179-1321(1514)
279 PF08161 NUC173: NUC173 domain 70.3 1.1E+02 0.0023 31.8 13.7 71 143-213 14-84 (198)
280 PF10193 Telomere_reg-2: Telom 69.5 33 0.00072 31.9 8.9 51 248-303 4-57 (114)
281 PF09324 DUF1981: Domain of un 69.2 23 0.0005 31.1 7.3 64 131-195 21-84 (86)
282 PF12765 Cohesin_HEAT: HEAT re 67.9 8.2 0.00018 28.5 3.6 40 153-194 3-42 (42)
283 PF12530 DUF3730: Protein of u 67.7 1.8E+02 0.0039 31.2 21.3 138 54-199 9-151 (234)
284 cd03572 ENTH_epsin_related ENT 67.4 35 0.00077 32.1 8.5 68 965-1032 38-116 (122)
285 PF12783 Sec7_N: Guanine nucle 67.3 53 0.0011 33.1 10.7 97 143-239 36-146 (168)
286 KOG1048 Neural adherens juncti 66.7 2.7E+02 0.0058 34.7 17.7 137 599-740 517-665 (717)
287 PF04510 DUF577: Family of unk 65.6 74 0.0016 31.7 10.5 147 128-284 4-165 (174)
288 PF03810 IBN_N: Importin-beta 65.0 15 0.00032 31.3 5.3 42 14-55 26-75 (77)
289 PF12397 U3snoRNP10: U3 small 64.8 28 0.00061 32.8 7.7 73 639-715 2-75 (121)
290 PF03542 Tuberin: Tuberin; In 64.6 2.1E+02 0.0045 32.7 15.6 165 6-181 143-330 (356)
291 cd03572 ENTH_epsin_related ENT 63.9 73 0.0016 30.0 9.8 83 1005-1094 37-119 (122)
292 PF08713 DNA_alkylation: DNA a 63.8 13 0.00029 39.1 5.9 91 950-1047 106-196 (213)
293 PF08161 NUC173: NUC173 domain 63.6 1.9E+02 0.0041 30.0 16.2 71 516-595 4-74 (198)
294 PF11701 UNC45-central: Myosin 63.6 30 0.00065 34.4 7.9 141 51-196 8-156 (157)
295 PF10350 DUF2428: Putative dea 63.5 2E+02 0.0044 31.2 15.0 163 143-305 61-250 (255)
296 PF14664 RICTOR_N: Rapamycin-i 62.6 2.9E+02 0.0064 31.9 20.9 242 25-283 4-269 (371)
297 smart00288 VHS Domain present 62.4 69 0.0015 30.8 9.9 72 212-286 41-114 (133)
298 cd03569 VHS_Hrs_Vps27p VHS dom 62.4 71 0.0015 31.1 10.0 74 211-288 44-119 (142)
299 PF14225 MOR2-PAG1_C: Cell mor 62.2 2.4E+02 0.0052 30.8 20.6 212 512-742 7-241 (262)
300 PF04388 Hamartin: Hamartin pr 62.0 1.2E+02 0.0026 38.1 14.4 139 47-204 5-145 (668)
301 PF03130 HEAT_PBS: PBS lyase H 61.2 7.4 0.00016 25.5 2.0 25 869-896 1-25 (27)
302 COG5098 Chromosome condensatio 60.9 3.9E+02 0.0085 32.8 38.2 609 9-714 351-1094(1128)
303 cd03561 VHS VHS domain family; 60.5 1.4E+02 0.003 28.7 11.7 94 142-243 17-116 (133)
304 PF10193 Telomere_reg-2: Telom 60.2 23 0.00049 33.0 5.9 82 211-295 6-91 (114)
305 cd03565 VHS_Tom1 VHS domain fa 59.2 1E+02 0.0023 30.0 10.5 78 209-287 39-119 (141)
306 COG5138 Uncharacterized conser 58.4 42 0.0009 31.7 7.0 62 1129-1204 105-166 (168)
307 PF09324 DUF1981: Domain of un 57.5 61 0.0013 28.4 7.8 68 208-279 17-84 (86)
308 PF12054 DUF3535: Domain of un 56.4 4.1E+02 0.0089 31.6 22.4 96 441-542 102-209 (441)
309 KOG0929 Guanine nucleotide exc 55.5 3.7E+02 0.008 36.6 17.2 123 573-696 1185-1322(1514)
310 PF11701 UNC45-central: Myosin 55.2 78 0.0017 31.5 9.2 110 1005-1131 41-157 (157)
311 KOG2842 Interferon-related pro 54.9 3.1E+02 0.0068 31.1 14.1 103 485-592 75-178 (427)
312 cd03567 VHS_GGA VHS domain fam 54.7 85 0.0018 30.5 9.0 73 642-714 37-116 (139)
313 KOG1926 Predicted regulator of 54.5 6.2E+02 0.014 33.1 26.0 68 4-74 73-140 (1129)
314 COG5101 CRM1 Importin beta-rel 54.3 4.7E+02 0.01 31.7 33.3 159 42-203 477-652 (1053)
315 PF12243 CTK3: CTD kinase subu 54.1 1.9E+02 0.0041 28.0 11.1 103 175-285 13-121 (139)
316 cd03568 VHS_STAM VHS domain fa 53.5 1.1E+02 0.0024 29.9 9.6 74 426-501 37-112 (144)
317 cd03568 VHS_STAM VHS domain fa 53.4 1.1E+02 0.0023 30.0 9.6 61 142-202 50-113 (144)
318 COG5537 IRR1 Cohesin [Cell div 52.1 2.6E+02 0.0057 33.6 13.6 107 926-1033 269-384 (740)
319 PF11935 DUF3453: Domain of un 51.8 2.7E+02 0.0058 30.0 13.3 72 379-458 2-74 (239)
320 PF14631 FancD2: Fanconi anaem 51.6 1.8E+02 0.0038 40.0 14.2 124 152-281 417-540 (1426)
321 PF05327 RRN3: RNA polymerase 51.4 5.6E+02 0.012 31.6 18.2 95 142-241 87-195 (563)
322 PF12612 TFCD_C: Tubulin foldi 50.6 1.6E+02 0.0036 30.3 11.1 76 423-500 84-159 (193)
323 KOG2759 Vacuolar H+-ATPase V1 50.4 4.5E+02 0.0099 30.3 25.8 71 812-884 366-440 (442)
324 cd00197 VHS_ENTH_ANTH VHS, ENT 50.2 85 0.0018 29.2 8.2 74 206-282 35-114 (115)
325 PF00790 VHS: VHS domain; Int 50.2 97 0.0021 30.1 8.8 76 425-501 41-120 (140)
326 PF11919 DUF3437: Domain of un 49.2 26 0.00057 30.9 4.1 57 226-286 5-61 (90)
327 cd03567 VHS_GGA VHS domain fam 49.0 2.6E+02 0.0056 27.1 12.5 61 142-202 51-119 (139)
328 PF14868 DUF4487: Domain of un 48.6 5.9E+02 0.013 31.2 26.8 77 465-542 476-553 (559)
329 smart00288 VHS Domain present 47.9 2.6E+02 0.0057 26.8 12.4 93 142-242 17-114 (133)
330 KOG2973 Uncharacterized conser 47.7 89 0.0019 34.2 8.4 94 142-239 16-111 (353)
331 PF12612 TFCD_C: Tubulin foldi 47.4 2.9E+02 0.0063 28.5 12.4 151 424-591 5-158 (193)
332 PF12783 Sec7_N: Guanine nucle 46.9 3.1E+02 0.0068 27.4 13.2 78 120-199 66-146 (168)
333 cd00197 VHS_ENTH_ANTH VHS, ENT 46.2 2.5E+02 0.0053 26.1 11.0 76 1005-1092 36-113 (115)
334 cd03569 VHS_Hrs_Vps27p VHS dom 46.1 1.7E+02 0.0037 28.5 9.7 73 426-500 41-115 (142)
335 smart00567 EZ_HEAT E-Z type HE 45.8 27 0.00059 23.3 3.0 14 343-356 1-14 (30)
336 PF04510 DUF577: Family of unk 45.4 1.6E+02 0.0035 29.5 9.2 97 202-304 40-139 (174)
337 KOG2213 Apoptosis inhibitor 5/ 44.6 5.3E+02 0.012 29.5 19.1 45 5-56 62-106 (460)
338 KOG4541 Nuclear transport rece 43.3 5.5E+02 0.012 30.6 14.2 135 143-286 571-718 (748)
339 COG5101 CRM1 Importin beta-rel 42.4 7.1E+02 0.015 30.3 45.8 131 1020-1162 799-946 (1053)
340 PF12397 U3snoRNP10: U3 small 42.3 1.4E+02 0.003 28.0 8.4 70 42-113 2-74 (121)
341 PF11841 DUF3361: Domain of un 41.5 68 0.0015 31.7 6.0 75 17-91 73-147 (160)
342 KOG1877 Putative transmembrane 41.4 8.6E+02 0.019 31.0 17.3 145 357-522 43-203 (819)
343 cd06561 AlkD_like A new struct 41.2 86 0.0019 32.4 7.5 92 950-1048 92-183 (197)
344 KOG1848 Uncharacterized conser 41.1 1.1E+03 0.023 32.0 20.7 190 13-204 851-1087(1610)
345 smart00185 ARM Armadillo/beta- 40.6 29 0.00062 24.9 2.7 28 47-74 13-40 (41)
346 PF04147 Nop14: Nop14-like fam 40.6 5.1E+02 0.011 33.7 15.5 61 417-478 463-526 (840)
347 PF11935 DUF3453: Domain of un 40.2 5E+02 0.011 27.9 19.2 88 208-301 114-210 (239)
348 PF04078 Rcd1: Cell differenti 39.9 1.8E+02 0.0038 31.4 9.2 40 266-305 108-149 (262)
349 smart00185 ARM Armadillo/beta- 39.8 37 0.0008 24.3 3.2 28 854-881 13-40 (41)
350 PF08146 BP28CT: BP28CT (NUC21 38.3 3.6E+02 0.0079 26.6 10.8 36 60-95 35-70 (153)
351 PF09759 Atx10homo_assoc: Spin 38.1 86 0.0019 28.5 5.7 59 227-287 3-63 (102)
352 PF00790 VHS: VHS domain; Int 37.8 3.9E+02 0.0084 25.9 12.3 74 168-241 40-120 (140)
353 KOG2005 26S proteasome regulat 37.8 5.7E+02 0.012 31.3 13.6 64 642-712 451-516 (878)
354 KOG2011 Sister chromatid cohes 37.2 1.1E+03 0.024 31.0 24.3 214 144-396 170-396 (1048)
355 cd00872 PI3Ka_I Phosphoinositi 37.0 2.5E+02 0.0055 28.3 9.5 51 58-112 83-133 (171)
356 PF00613 PI3Ka: Phosphoinositi 37.0 2.5E+02 0.0053 28.8 9.7 50 59-112 90-139 (184)
357 KOG4199 Uncharacterized conser 35.9 6.7E+02 0.014 28.1 27.6 112 249-397 330-442 (461)
358 KOG2005 26S proteasome regulat 34.4 3.4E+02 0.0074 33.1 11.1 70 809-884 449-520 (878)
359 cd03562 CID CID (CTD-Interacti 33.9 2.4E+02 0.0052 26.1 8.4 54 619-677 18-71 (114)
360 KOG1048 Neural adherens juncti 33.0 1.1E+03 0.024 29.7 18.2 115 168-286 516-644 (717)
361 PF11919 DUF3437: Domain of un 32.4 72 0.0016 28.3 4.2 59 144-203 4-62 (90)
362 PF13324 GCIP: Grap2 and cycli 31.8 7.3E+02 0.016 27.3 16.6 13 229-241 98-110 (275)
363 smart00145 PI3Ka Phosphoinosit 31.2 3.9E+02 0.0084 27.4 9.9 50 59-112 89-138 (184)
364 cd03561 VHS VHS domain family; 30.6 4.9E+02 0.011 24.9 12.5 78 84-162 37-116 (133)
365 KOG1877 Putative transmembrane 30.6 1.2E+03 0.026 29.7 15.5 89 24-113 76-174 (819)
366 PF11841 DUF3361: Domain of un 30.0 5.7E+02 0.012 25.5 12.4 83 131-213 62-145 (160)
367 KOG2085 Serine/threonine prote 29.1 7.1E+02 0.015 28.7 12.0 240 684-935 176-434 (457)
368 PF14228 MOR2-PAG1_mid: Cell m 28.4 1.6E+03 0.035 30.2 24.4 74 168-241 194-277 (1120)
369 PLN03205 ATR interacting prote 28.3 4.2E+02 0.0092 30.0 10.0 112 558-671 321-445 (652)
370 KOG3036 Protein involved in ce 28.3 7.7E+02 0.017 26.4 13.3 41 265-305 136-178 (293)
371 PF09462 Mus7: Mus7/MMS22 fami 28.0 1.3E+03 0.028 28.9 19.9 46 442-490 469-514 (614)
372 COG5234 CIN1 Beta-tubulin fold 27.6 5.3E+02 0.011 31.8 11.1 152 42-198 242-415 (993)
373 cd03565 VHS_Tom1 VHS domain fa 26.5 5.3E+02 0.012 25.1 9.6 74 427-501 39-117 (141)
374 PF12726 SEN1_N: SEN1 N termin 26.5 1.5E+03 0.032 29.1 37.9 231 46-279 77-342 (727)
375 PF14228 MOR2-PAG1_mid: Cell m 26.0 1.5E+03 0.032 30.5 16.1 52 149-200 936-987 (1120)
376 KOG2307 Low density lipoprotei 25.9 3.5E+02 0.0075 32.2 9.1 57 419-480 489-545 (705)
377 PF02854 MIF4G: MIF4G domain; 25.6 7.3E+02 0.016 25.3 12.8 167 5-180 3-180 (209)
378 PF08324 PUL: PUL domain; Int 25.6 6.2E+02 0.014 27.5 11.4 160 424-590 61-230 (268)
379 KOG1087 Cytosolic sorting prot 25.6 6.4E+02 0.014 30.1 11.5 88 208-299 38-127 (470)
380 PRK13689 hypothetical protein; 25.4 1.7E+02 0.0036 24.6 4.8 41 73-114 3-43 (75)
381 PF14668 RICTOR_V: Rapamycin-i 25.0 1.6E+02 0.0034 25.0 4.8 54 618-674 4-60 (73)
382 KOG1832 HIV-1 Vpr-binding prot 24.7 38 0.00082 41.8 1.5 17 16-32 674-690 (1516)
383 KOG0905 Phosphoinositide 3-kin 24.5 3.7E+02 0.0081 35.2 9.7 93 1017-1140 901-994 (1639)
384 cd00872 PI3Ka_I Phosphoinositi 24.3 98 0.0021 31.2 4.1 43 858-900 74-118 (171)
385 PF06685 DUF1186: Protein of u 23.7 9.5E+02 0.021 26.0 12.9 41 1009-1049 114-159 (249)
386 PF10165 Ric8: Guanine nucleot 23.7 1.3E+03 0.028 27.5 22.6 167 30-197 6-216 (446)
387 PF14668 RICTOR_V: Rapamycin-i 23.6 2.2E+02 0.0048 24.1 5.4 54 187-241 4-60 (73)
388 PF11707 Npa1: Ribosome 60S bi 23.5 4.1E+02 0.0088 30.2 9.5 122 1003-1133 53-187 (330)
389 cd00869 PI3Ka_II Phosphoinosit 23.1 72 0.0016 32.0 2.9 35 866-900 84-118 (169)
390 KOG2256 Predicted protein invo 22.6 1.5E+03 0.033 27.9 16.5 192 347-565 257-473 (661)
391 KOG2999 Regulator of Rac1, req 22.5 1.3E+03 0.027 27.9 12.7 174 25-205 62-248 (713)
392 PF09759 Atx10homo_assoc: Spin 22.5 1.2E+02 0.0027 27.5 4.0 52 947-998 2-63 (102)
393 PF06393 BID: BH3 interacting 22.4 1.5E+02 0.0032 30.0 4.8 66 225-290 79-145 (196)
394 cd00870 PI3Ka_III Phosphoinosi 22.0 78 0.0017 31.8 2.9 35 866-900 91-125 (166)
395 cd07064 AlkD_like_1 A new stru 22.0 3.4E+02 0.0075 28.4 7.9 91 950-1047 101-191 (208)
396 COG5110 RPN1 26S proteasome re 21.9 1.4E+03 0.031 27.4 18.5 262 794-1090 431-741 (881)
397 COG5657 CSE1 CAS/CSE protein i 21.5 1.8E+03 0.039 28.5 27.8 32 189-220 104-135 (947)
398 PF14961 BROMI: Broad-minded p 21.0 9.3E+02 0.02 32.1 12.3 72 5-78 162-234 (1296)
399 COG5234 CIN1 Beta-tubulin fold 20.7 1.7E+03 0.037 27.8 25.6 156 168-359 244-417 (993)
400 cd06561 AlkD_like A new struct 20.7 5.1E+02 0.011 26.5 9.0 73 1073-1149 113-186 (197)
401 PF10441 Urb2: Urb2/Npa2 famil 20.2 8.1E+02 0.018 25.9 10.5 18 485-502 53-70 (223)
402 PF14911 MMS22L_C: S-phase gen 20.0 1.4E+03 0.03 26.4 18.2 33 47-79 66-102 (373)
No 1
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=4.7e-213 Score=1776.67 Aligned_cols=1207 Identities=52% Similarity=0.814 Sum_probs=1135.6
Q ss_pred CchHHHH-HHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcCh
Q 000934 1 MANLQMA-AILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE 79 (1219)
Q Consensus 1 ~~~~~l~-~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~ 79 (1219)
||+++.. .+++||+++||||||||+|||+++|+++.+++|.+++++++++++++|+|.|+||||.|+||+|+++.|+++
T Consensus 1 ma~~~~~i~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke 80 (1233)
T KOG1824|consen 1 MASMQVGINLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKE 80 (1233)
T ss_pred CchhHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchH
Confidence 8886666 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCC---hhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHH
Q 000934 80 PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT---SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDV 156 (1219)
Q Consensus 80 ~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~---~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l 156 (1219)
.+++.+++.||..+.+++++.|++++++|++++.++++ +.+...+++.++|+|.+++..++....++.+++|+++++
T Consensus 81 ~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ 160 (1233)
T KOG1824|consen 81 DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADV 160 (1233)
T ss_pred HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996 356788999999999999987665667999999999999
Q ss_pred HHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 000934 157 LHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGA 236 (1219)
Q Consensus 157 ~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~ 236 (1219)
+.+||..+.++|..++.++++.+.+++..|||+|+.+||.++.+++...|..++.+++.+|..+.. ....+++++++++
T Consensus 161 lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q-~~~~rt~Iq~l~~ 239 (1233)
T KOG1824|consen 161 LSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQ-MSATRTYIQCLAA 239 (1233)
T ss_pred HHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCc-hHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987754 4677899999999
Q ss_pred HHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCC
Q 000934 237 LSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEE 316 (1219)
Q Consensus 237 l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~ 316 (1219)
+++.+|+||+.|++.++|.+.++++..+++|||+||+++++||.|+.+||+++.||.++++++++.|++|||||.+|++|
T Consensus 240 i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~e 319 (1233)
T KOG1824|consen 240 ICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEE 319 (1233)
T ss_pred HHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCcc
Confidence 99999999999999999999999976668899999999999999999999999999999999999999999999977655
Q ss_pred CcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHH
Q 000934 317 DSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIE 396 (1219)
Q Consensus 317 d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~ 396 (1219)
|++.+..+|.||||.+++|+||||+||||||+|+||+..+|.++++++..+|+++.|.++.||+||||+|+.+++.++..
T Consensus 320 Ded~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ 399 (1233)
T KOG1824|consen 320 DEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIA 399 (1233)
T ss_pred chhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44443334444555579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCccccCC---CCCChh---HHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhh
Q 000934 397 LVRQTGNVTKGQIDN---NELNPR---WLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLI 470 (1219)
Q Consensus 397 l~~~~~~~~~~~~~~---~~~~~~---~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~ 470 (1219)
++++++...+|..+. ..+|+. ..|.+++|.|++++.+++++++.++| ++|+.+|.+++.+.|+.+.+|++.++
T Consensus 400 ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~-~~cf~lL~eli~~lp~~l~~~~~slv 478 (1233)
T KOG1824|consen 400 LLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTR-QGCFLLLTELINVLPGALAQHIPSLV 478 (1233)
T ss_pred HHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccch-hhHHHHHHHHHHhCcchhhhcccccc
Confidence 999999877776542 123433 57899999999999999999999999 99999999999999999999999999
Q ss_pred HhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCC
Q 000934 471 PGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGL 550 (1219)
Q Consensus 471 ~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~ 550 (1219)
|+|...++|+++.++.+++++.|+..++.+|+|+.|+||++.+.|.+..+++|++|++.+|||.++++++++++|...++
T Consensus 479 pgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~ 558 (1233)
T KOG1824|consen 479 PGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPS 558 (1233)
T ss_pred hhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCc
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999987666
Q ss_pred CCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCCchHHHHHHHHHHHhc
Q 000934 551 GFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAA 630 (1219)
Q Consensus 551 ~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~ 630 (1219)
+.++.||+.+++...++++.++|.|+|||++||.|+|.++.++|+.++..++.+++++++|++||.||.+|++|+..|+.
T Consensus 559 ~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~ 638 (1233)
T KOG1824|consen 559 SFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAM 638 (1233)
T ss_pred cCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHh
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHHHHH
Q 000934 631 SPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCC 710 (1219)
Q Consensus 631 s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~ 710 (1219)
|+...++.+.+.++++++.+++||++|.+|.+++.++..++.+++..++...++.++.+++++++++|.|+.+.++.++.
T Consensus 639 S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~ 718 (1233)
T KOG1824|consen 639 SPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLT 718 (1233)
T ss_pred ccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 99888999999999999999999999999999999999999999888888899999999999999999999999999999
Q ss_pred HHhhcccCCCchhHhHhhhhHHHHHHHhhhcccchhhHHHHHHHHHHHHhhcCCCh--HHHHHHHhccCCCCCCCcchhh
Q 000934 711 TLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSF--DTLLDSLLSSAKPSPQSGGVAK 788 (1219)
Q Consensus 711 ~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~~~l~~~~~~~~--~~l~~~Ll~~~~~~~~~~~l~~ 788 (1219)
.+.. .+|.....+...+++.++.+++||++||.++.+++.++.+++....+.+ ..++..+..++. .+..+.++|
T Consensus 719 tl~~---~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~-~~~~~~l~k 794 (1233)
T KOG1824|consen 719 TLAI---IQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVY-EQVTDGLHK 794 (1233)
T ss_pred HHHh---cccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcc-cccccchhH
Confidence 9998 5787777788999999999999999999999999999999998875554 344455444443 234556899
Q ss_pred hhhhhhhhHhhhhhhccCccchhhHHHHHHHHhhcCCCCchHHHHHHHHHHHhhhccCCCCCccchHHHHHHhcCCCchh
Q 000934 789 QAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEE 868 (1219)
Q Consensus 789 ~a~~~~a~~i~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~laL~~Lgeig~~~~~~~~~~l~~~ll~~l~~~~e~ 868 (1219)
|+++++|+|+|+++.+.+. +...+...++.++++ |..++..+.|++++|||+|++.+++...++++++++.|++++|+
T Consensus 795 qa~~siA~cvA~Lt~~~~~-~s~s~a~kl~~~~~s-~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~ed 872 (1233)
T KOG1824|consen 795 QAYYSIAKCVAALTCACPQ-KSKSLATKLIQDLQS-PKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSED 872 (1233)
T ss_pred HHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHhC-CCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHH
Confidence 9999999999999887764 556777788888874 55678899999999999999999988888999999999999999
Q ss_pred HhHHHHHHHHhhhhcCcccchHHHHHHhccccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchH
Q 000934 869 IKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVR 948 (1219)
Q Consensus 869 vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~~~~~~~l~alkeii~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~e~~r 948 (1219)
||.||++|||++++||++.|+|+|++++.++|++||++|||+||+|...+. ..+.|+++.||+.||++|++.+|++|
T Consensus 873 vksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~sv---d~~~~~v~~IW~lL~k~cE~~eegtR 949 (1233)
T KOG1824|consen 873 VKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASV---DGLKPYVEKIWALLFKHCECAEEGTR 949 (1233)
T ss_pred HHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhcc---chhhhhHHHHHHHHHHhcccchhhhH
Confidence 999999999999999999999999999999999999999999999987753 36789999999999999999999999
Q ss_pred hHHHHHHhhhhccCcccchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHhhccCCChHHHHHHHH
Q 000934 949 NVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVL 1028 (1219)
Q Consensus 949 ~~~ae~LG~l~~~~p~~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~D~~~~vR~~a~~ 1028 (1219)
+++|||||+|++++|+.++|.|+..+.++.+..|.++++++||++++.+...|+++++.|+.|+..++|+|.+|||+|+.
T Consensus 950 ~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLv 1029 (1233)
T KOG1824|consen 950 NVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALV 1029 (1233)
T ss_pred HHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCchhhhchhhhhhHHHHHhhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhhhcCCCchhchHH
Q 000934 1029 ALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVP 1108 (1219)
Q Consensus 1029 ~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~elir~v~mgpfkh~~Ddgle~Rk~a~e~l~~ll~~~~~~~~~~~~~~~ 1108 (1219)
+|++++||+|++|++.++++||.||.+|++|+|+||+|+||||||+||||+++||+||||||||++.|++++|+.+|+ .
T Consensus 1030 v~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl-~ 1108 (1233)
T KOG1824|consen 1030 VLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFL-N 1108 (1233)
T ss_pred HHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHH-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 4
Q ss_pred HHhcccCCcchhHhhHHHHHHHHHhhCchhHHHhHHHhhHHHHhhhcccCCcchhhhhhhhHHHHHHHHHHHHHHhhccc
Q 000934 1109 YLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQIS 1188 (1219)
Q Consensus 1109 ~~~~gl~D~~di~~l~~~~l~~l~~~~p~~~~~~l~~l~~~l~~~l~~k~k~~~~kqe~e~~~e~~rs~lr~~~~l~~~~ 1188 (1219)
|+..||.|||||||+||+||.||+.+||+.|++|+|+++||||+|++.|+|+|+||||+||++|++|||+|++.+|.++|
T Consensus 1109 ~~~~GL~DhydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ip 1188 (1233)
T KOG1824|consen 1109 HVEDGLEDHYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTIP 1188 (1233)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHhcCcchHHHHHHHhcC
Q 000934 1189 GGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 1219 (1219)
Q Consensus 1189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1219 (1219)
+.++||+|.+|..+++++|+++..|+.|+||
T Consensus 1189 ~v~~np~~~df~sqik~~pel~~~fe~I~ke 1219 (1233)
T KOG1824|consen 1189 EVEKNPQFSDFESQIKSNPELAAIFESIQKE 1219 (1233)
T ss_pred ccccChHHHHHHHHhhcChhHHHHHHHHHHH
Confidence 9999999999999999999999999999997
No 2
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=2e-45 Score=417.57 Aligned_cols=985 Identities=17% Similarity=0.227 Sum_probs=682.3
Q ss_pred HHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHh-cc--CccchhhHHHHHHHH-HHhh----hcCh
Q 000934 8 AILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQ-LD--DVAGDVSGLAVKCLA-PLVK----KVSE 79 (1219)
Q Consensus 8 ~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~-L~--D~~~eVq~~A~k~l~-~l~~----~~~~ 79 (1219)
.+|..+.|..+++.-.|.--|--.. -+..+...+.+++.|... +. ++.+++-..+.|..- .+.+ .+..
T Consensus 51 ~lLklL~D~ngEVQnlAVKClg~lv----sKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~ 126 (1233)
T KOG1824|consen 51 MLLKLLEDKNGEVQNLAVKCLGPLV----SKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAA 126 (1233)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHH----hhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccccc
Confidence 3344444444444444433332111 235567788888888866 43 345666666665543 2222 2344
Q ss_pred hhHHHHHHHHHHHhcCCCcchhhHHHHHHH---HHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHH
Q 000934 80 PRVVEMTDKLCIKLLNGKDQHRDIASIALK---TIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDV 156 (1219)
Q Consensus 80 ~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~---~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l 156 (1219)
..+..+.++|.+.+... ++.-.+-..+|. -+..+++. +..+....+...++..++.+ ...||..++.+|+.+
T Consensus 127 tV~~~~t~~l~~~i~~q-e~~sai~~e~lDil~d~lsr~g~--ll~~fh~~il~~l~~ql~s~--R~aVrKkai~~l~~l 201 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQ-EDVSAIKCEVLDILADVLSRFGT--LLPNFHLSILKCLLPQLQSP--RLAVRKKAITALGHL 201 (1233)
T ss_pred HHHHHHHHHHHHHhhhc-ccchhhHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHhhcccCh--HHHHHHHHHHHHHHH
Confidence 55666777776665421 111112222332 23333332 22223333333444434432 467999999999999
Q ss_pred HHHhhhhhhHhHHHHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhCCHH---HHHHHHHHHHHHhhcC-CCChHHHHHHH
Q 000934 157 LHKFGNLMSNDHERLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSDD---LLAKATIEVVRNLRSK-GAKPEMIRTNI 231 (1219)
Q Consensus 157 ~~~~g~~l~~~~~~l~~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~---~~~~l~~~ll~~l~~~-~~~~~~~~~~i 231 (1219)
....+..+ +..+++.++..|..+. +..-+..++||+.++...+.. +...++|.+.+..... ..+++.|+..+
T Consensus 202 a~~~~~~l---y~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~l 278 (1233)
T KOG1824|consen 202 ASSCNRDL---YVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCL 278 (1233)
T ss_pred HHhcCHHH---HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHH
Confidence 88776643 5667777778786654 456677899999999887765 4677888888777332 22458999999
Q ss_pred HHHHHHHHHhhhhhccchhhhHHHHHHhhhcc--------C---------CCCh--------------HHHHHHHHHHHH
Q 000934 232 QMVGALSRAVGYRFGPHLGDTVPVLIDYCTSA--------S---------ENDE--------------ELREYSLQALES 280 (1219)
Q Consensus 232 ~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~--------~---------~~d~--------------elre~al~~l~~ 280 (1219)
|+++++.+.+|..+.||.+.++..+++++..+ + ++|+ -+|++|..+++.
T Consensus 279 Qale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a 358 (1233)
T KOG1824|consen 279 QALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEA 358 (1233)
T ss_pred HHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999998743 0 0111 199999999999
Q ss_pred HHHhCchhhcccHHHHHHH-------------------HHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcc
Q 000934 281 FLLRCPRDISSYCDEILHL-------------------TLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDA 341 (1219)
Q Consensus 281 l~~~~~~~~~~~l~~ii~~-------------------~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~ 341 (1219)
++...++.+..+..++-|. ....++.-+++.+.-. |.|.+ ++ ++--+ .
T Consensus 359 ~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~-d~d~~-------e~-~g~~s----~ 425 (1233)
T KOG1824|consen 359 VISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLA-DNDAM-------EQ-GGTPS----D 425 (1233)
T ss_pred HHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCccccc-Cchhh-------hc-cCCcc----c
Confidence 9887664443344333333 3333333333321100 00000 00 00000 0
Q ss_pred cHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHH
Q 000934 342 SWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLK 421 (1219)
Q Consensus 342 swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~ 421 (1219)
.|- +......++..+-+.++++.-..|..++..+.+++.... +.+.
T Consensus 426 ~~~-------------------L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp---------------~~l~ 471 (1233)
T KOG1824|consen 426 LSM-------------------LSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLP---------------GALA 471 (1233)
T ss_pred hHH-------------------HHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCc---------------chhh
Confidence 121 222222233333344566655577888888999887642 3678
Q ss_pred HHHHHHHHHHHHHhcccCc--cchhhHHHHHHHH-HHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHh
Q 000934 422 QEVSKIVKSINRQLREKSI--KTKQVGAFSVLRE-LVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVL 498 (1219)
Q Consensus 422 ~~~p~lv~~l~~~L~~~~~--~~r~~~~~~~L~~-L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~ 498 (1219)
+++|.+++.+...|+|++. ..+ ..++.++.. ++.+.|..|.+|++.+.|.+..+..++. ..+..||+.....++
T Consensus 472 ~~~~slvpgI~~~l~DkSsss~~k-i~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f--yKisaEAL~v~~~lv 548 (1233)
T KOG1824|consen 472 QHIPSLVPGIIYSLNDKSSSSNLK-IDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPF--YKISAEALLVCQQLV 548 (1233)
T ss_pred hcccccchhhhhhcCCccchHHHH-HHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCch--HhhhHHHHHHHHHHH
Confidence 8999999999999999875 355 667766665 4455577899999999999999999876 577888888877776
Q ss_pred ccC----CC--CCchhhhhhhHHHHHHHh--cCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhh
Q 000934 499 SSH----SP--PVFHPYIKALSSPVLAAV--GERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLT 570 (1219)
Q Consensus 499 ~~~----~~--~~~~~~l~~i~p~l~~~l--~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~ 570 (1219)
+.. +| -...||+.+++....+.+ +|.+++|+..|+.|+++++..++. .....++..++.++++++
T Consensus 549 kvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD-------~l~~eL~~~L~il~eRl~ 621 (1233)
T KOG1824|consen 549 KVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD-------FLGNELPRTLPILLERLG 621 (1233)
T ss_pred HHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh-------hhhhhhHHHHHHHHHHHh
Confidence 542 22 345679999999999988 477889999999999999998753 467788889999999998
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhcc-cccchhhhHHHHHHHhhc--CCchHHHHHHHHHHHhcCCCCCch-hHHHHHHHH
Q 000934 571 NQDQDQEVKECAISCMGLVISTFGD-NLGAELPACLPVLVDRMG--NEITRLTAVKAFAVIAASPLHIDL-TCVLEHVIA 646 (1219)
Q Consensus 571 ~~d~d~~vr~~Ai~alg~l~~~~g~-~l~~~~~~~l~~L~~~L~--~e~~r~~a~~al~~i~~s~~~~~~-~~~l~~~l~ 646 (1219)
+.-+ |-.|+.|+..++..--+ .+.+.+..+++.+...++ +...|.+++.++..+.... ...+ ...+..++.
T Consensus 622 nEiT----Rl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~-~~~~~~~~~e~vL~ 696 (1233)
T KOG1824|consen 622 NEIT----RLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNY-SDSIPAELLEAVLV 696 (1233)
T ss_pred chhH----HHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHH
Confidence 6543 78888888887765433 556788999999988764 3456777777877776321 1122 455678889
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhh--hHHHHHHHHHHhhcccCCCchhH
Q 000934 647 ELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHM--TALALELCCTLMADKRSSPNVGL 724 (1219)
Q Consensus 647 ~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~--~~~al~~l~~l~~~~~~~p~~~~ 724 (1219)
++.+++..++......|+.++..++...+..+. .....+++++..+++++-.|. ....+.++..++.+ ..|+ ..
T Consensus 697 el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~-~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t--~~~~-l~ 772 (1233)
T KOG1824|consen 697 ELPPLISESDLHVTQLAVAFLTTLAIIQPSSLL-KISNPILDEIIRLLRSPLLQGGALSALLLFFQALVIT--KEPD-LD 772 (1233)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHH-HHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhc--CCCC-cc
Confidence 999999999999999999999999988776432 234668888888888775553 34566677777764 2222 11
Q ss_pred hHhhhhHHHHHHHhhhcc-------cchhhHHHHHHHHHHHHhhcCCChHHHHHHHhccCCCCCCCcc------------
Q 000934 725 AVRNKVLPQALALIKSSL-------LQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGG------------ 785 (1219)
Q Consensus 725 ~~~~~~l~~l~~ll~s~~-------l~~~~l~al~~~~~~l~~~~~~~~~~l~~~Ll~~~~~~~~~~~------------ 785 (1219)
...++..+..|. ++.++++++..|+++++...+.....+...+......++.++.
T Consensus 773 ------y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGEl 846 (1233)
T KOG1824|consen 773 ------YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGEL 846 (1233)
T ss_pred ------HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhh
Confidence 233444444442 4668889999999999887753333222222211110000000
Q ss_pred -----------h-----------hhhhhhhhhhHhhhhhhccCccchhhHHHHHHHHhhcCCCCchHHHHHHHHHHHhhh
Q 000934 786 -----------V-----------AKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIG 843 (1219)
Q Consensus 786 -----------l-----------~~~a~~~~a~~i~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~laL~~Lgeig 843 (1219)
+ +++....++.++|++++++ .+..++.+..++. .++.++++-|++|.|+.
T Consensus 847 gr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn----l~~yLpfil~qi~----sqpk~QyLLLhSlkevi 918 (1233)
T KOG1824|consen 847 GRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN----LPKYLPFILEQIE----SQPKRQYLLLHSLKEVI 918 (1233)
T ss_pred ccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc----hHhHHHHHHHHHh----cchHhHHHHHHHHHHHH
Confidence 0 1233333556677766542 3455555555554 46778999999999986
Q ss_pred ccCCCC----CccchHHHHHHhcCCCchhHhHHHHHHHHhhhhcCcccchHHHHHHhccc-cchhHHHHHHHHHHHhhcc
Q 000934 844 RRKDLS----SHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQ-QKKQYLLLHSLKEVIVRQS 918 (1219)
Q Consensus 844 ~~~~~~----~~~~l~~~ll~~l~~~~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~-~~~~~~~l~alkeii~~~~ 918 (1219)
.+...+ ..+++|+.+++.+++..|..|+..|+|||+++..+++..+|.+-..+.++ +..|.+.+.|+|+.+...
T Consensus 919 ~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~- 997 (1233)
T KOG1824|consen 919 VSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQ- 997 (1233)
T ss_pred HHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCC-
Confidence 654332 35789999999999999999999999999999999999999999999886 567999999999988754
Q ss_pred ccchhhhhHHHHHHHHHHHhhccCCccchHhHHHHHHhhhhccCcc-------cchHHHHHHhcCCCchhhHHHHhhhHh
Q 000934 919 VDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPA-------KLVPALKVRTTSSAAFTRATVVIAIKY 991 (1219)
Q Consensus 919 ~~~~~~~~~~~~~i~~~L~~~~~~~~e~~r~~~ae~LG~l~~~~p~-------~~lp~l~~~l~~~~~~~R~~~~~~~k~ 991 (1219)
++.+++++.+.+..++..+.|+|.+||+++.-++...+++.|. .++|.++...+..+..+|.+-|++|||
T Consensus 998 ---p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH 1074 (1233)
T KOG1824|consen 998 ---PQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKH 1074 (1233)
T ss_pred ---CCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccc
Confidence 4568889998899999999999999999999999999999987 678888888888899999999999999
Q ss_pred hhccCCc-------hhhhhhhHhH-----HHHHh----hccCCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHHHh
Q 000934 992 SIVERPE-------KIDEIIFPEI-----SSFLM----LIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQ 1055 (1219)
Q Consensus 992 ~~~~~~~-------~~~~~l~~~i-----~~~l~----~l~D~~~~vR~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~ 1055 (1219)
+++++-+ .+..+|..|+ ..|+. +|.|. .++|.+.+.+|..++.-+|+.+...++.++..|-+.
T Consensus 1075 ~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t 1153 (1233)
T KOG1824|consen 1075 TVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKT 1153 (1233)
T ss_pred cccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHH
Confidence 9999854 2344555553 35665 45565 899999999999999999999999999999999887
Q ss_pred hhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhh
Q 000934 1056 TIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDS 1095 (1219)
Q Consensus 1056 ~~~~~elir~v~mgpfkh~~Ddgle~Rk~a~e~l~~ll~~ 1095 (1219)
...|+ .-+..|+..|...|+.|+|.+++++++..
T Consensus 1154 ~~~k~------k~~svKqE~ek~~eLkRSAlRav~~L~~i 1187 (1233)
T KOG1824|consen 1154 CTLKV------KANSVKQEFEKQDELKRSALRAVAALLTI 1187 (1233)
T ss_pred hhccc------ccchHhHhHHHHHHHHHHHHHHHHHHhcc
Confidence 66543 34567888999999999999999999654
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-44 Score=427.71 Aligned_cols=948 Identities=16% Similarity=0.193 Sum_probs=667.0
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhcc-CccchhhHHHH----HHHHHHhh
Q 000934 1 MANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLD-DVAGDVSGLAV----KCLAPLVK 75 (1219)
Q Consensus 1 ~~~~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~-D~~~eVq~~A~----k~l~~l~~ 75 (1219)
|-+..+.+|+.++.++|.+.|.-|...|.+..... +++..|...+. .++++||..|. |.+...++
T Consensus 1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~----------~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~ 70 (1075)
T KOG2171|consen 1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTE----------PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWS 70 (1075)
T ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhccc----------chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhh
Confidence 55678999999999999999999998886554332 15666666665 56899999876 44455566
Q ss_pred hcChhhHHHHHHHHHHHhcCCC-cchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHH
Q 000934 76 KVSEPRVVEMTDKLCIKLLNGK-DQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILC 154 (1219)
Q Consensus 76 ~~~~~~~~~l~~~L~~~~~~~~-~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~ 154 (1219)
.++.+....+-..|+..+.+.. +.+|.--+.....+..+.-+ . -|..+++-|++...++ ++..|+.++-+|.
T Consensus 71 ~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~----e-~WPell~~L~q~~~S~--~~~~rE~al~il~ 143 (1075)
T KOG2171|consen 71 RLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLP----E-KWPELLQFLFQSTKSP--NPSLRESALLILS 143 (1075)
T ss_pred cCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc----c-chHHHHHHHHHHhcCC--CcchhHHHHHHHH
Confidence 7777777888888888876543 34555433333333332211 1 4777888888877765 5889999999999
Q ss_pred HHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCC--HH---HHHHHHHHHHHHhhcC--CCChHHH
Q 000934 155 DVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS--DD---LLAKATIEVVRNLRSK--GAKPEMI 227 (1219)
Q Consensus 155 ~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~--~~---~~~~l~~~ll~~l~~~--~~~~~~~ 227 (1219)
.+.+.+|..+.+|++.+...+.+++.+++..||-.|+++++.++.+.+ .. .|..++|.++..+... ..++...
T Consensus 144 s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a 223 (1075)
T KOG2171|consen 144 SLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAA 223 (1075)
T ss_pred hhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHH
Confidence 999999999999999999999999999988899999999999999995 22 4788999888877653 2223456
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhh---cccHHHHHHHHHHhc
Q 000934 228 RTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDI---SSYCDEILHLTLEYL 304 (1219)
Q Consensus 228 ~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~---~~~l~~ii~~~l~~l 304 (1219)
..++.++..++...|+-+.||+..|+.+.++...+. +-++.+|-.|++.+-+++++.|... .+|..++++.++..+
T Consensus 224 ~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~-~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~m 302 (1075)
T KOG2171|consen 224 KSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNK-ELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMM 302 (1075)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcc-cccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhc
Confidence 788999999999999999999999999999999876 5788999999999999999977543 368889999999887
Q ss_pred ccCCCCCCCCCCCcccccccccchhhccCCCCCCC-cccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccc
Q 000934 305 SYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDE-DASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKERE 383 (1219)
Q Consensus 305 ~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~ddd-D~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~ 383 (1219)
. +.++| ++|..+|+.+||+ +. --+.|.++++.+....|.
T Consensus 303 t-------e~~~D---------~ew~~~d~~ded~~~~---~~~~A~~~lDrlA~~L~g--------------------- 342 (1075)
T KOG2171|consen 303 T-------EEEDD---------DEWSNEDDLDEDDEET---PYRAAEQALDRLALHLGG--------------------- 342 (1075)
T ss_pred C-------Ccccc---------hhhccccccccccccC---cHHHHHHHHHHHHhcCCh---------------------
Confidence 5 11000 1111111111111 11 123555555555443331
Q ss_pred hhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhh
Q 000934 384 ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLA 463 (1219)
Q Consensus 384 ~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~ 463 (1219)
...+|.+++.+...+.+.+|+.| .+++..++.+++..+..+.
T Consensus 343 -------------------------------------~~v~p~~~~~l~~~l~S~~w~~R-~AaL~Als~i~EGc~~~m~ 384 (1075)
T KOG2171|consen 343 -------------------------------------KQVLPPLFEALEAMLQSTEWKER-HAALLALSVIAEGCSDVMI 384 (1075)
T ss_pred -------------------------------------hhehHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHcccHHHHH
Confidence 12357777778888889999999 9999999999998888888
Q ss_pred hhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCC-chHHHHHHHHHHHHHHHh
Q 000934 464 DHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGER-YYKVTAEALRVCGELVRV 542 (1219)
Q Consensus 464 ~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~-~~~v~~~al~~l~~l~~~ 542 (1219)
.+++++++.++..++|++ +++|.+|+.+++.+.....|+.-..|-+.+.|.++..+.+. .++|...|..++-++.+.
T Consensus 385 ~~l~~Il~~Vl~~l~Dph--prVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~ 462 (1075)
T KOG2171|consen 385 GNLPKILPIVLNGLNDPH--PRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE 462 (1075)
T ss_pred HHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh
Confidence 999999999999999987 89999999999999887776555557777888888888665 458999998888888776
Q ss_pred ccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCCchHHHHH
Q 000934 543 LRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAV 622 (1219)
Q Consensus 543 l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~ 622 (1219)
+. +..+.||++.++...+..|..++ .+.||+.+.+++|.++...+..+.||+++++|.|...|.|..
T Consensus 463 ~~------~~~l~pYLd~lm~~~l~~L~~~~-~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~------ 529 (1075)
T KOG2171|consen 463 CD------KSILEPYLDGLMEKKLLLLLQSS-KPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD------ 529 (1075)
T ss_pred Cc------HHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC------
Confidence 43 34689999999997777776543 588999999999999988888777777777777765554421
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCC-CCcchHHHHHHHHhhh---cCCCC
Q 000934 623 KAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDK-IGASAYEVIIVELSTL---ISDSD 698 (1219)
Q Consensus 623 ~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~-l~~~~~~~il~~l~~~---l~~~d 698 (1219)
.++.|.+|..+++|++.++.++|.. +.+ ..+++++.+..+ ..+.|
T Consensus 530 ------------------------------~~d~r~LrgktmEcisli~~AVGke~F~~-~a~eliqll~~~~~~~~~~d 578 (1075)
T KOG2171|consen 530 ------------------------------DKDLRELRGKTMECLSLIARAVGKEKFLP-LAEELIQLLLELQGSDQDDD 578 (1075)
T ss_pred ------------------------------chhhHHHHhhHHHHHHHHHHHhhhhhhhH-hHHHHHHHHHhhcccchhhc
Confidence 1456889999999999999999853 443 345666666555 45567
Q ss_pred hhhhHHHHHHHHHHhhcccCCCchhHhHhhhhHHHHHHHhhhcccchhhHHHHHHHHHHHHhhcCCChHHHHHHHhccCC
Q 000934 699 LHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAK 778 (1219)
Q Consensus 699 ~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~~~l~~~~~~~~~~l~~~Ll~~~~ 778 (1219)
...+.+.+.+++.+++. ....+.++.+.++|.++.-.+... .... + ++... +. .+......
T Consensus 579 d~~~sy~~~~warmc~i---lg~~F~p~L~~Vmppl~~ta~~~p--~~~~------~------d~~d~-e~-~~~~~~~e 639 (1075)
T KOG2171|consen 579 DPLRSYMIAFWARMCRI---LGDDFAPFLPVVMPPLLKTARLDP--DVAL------S------DEEDE-EE-EQDLDGWE 639 (1075)
T ss_pred cccHHHHHHHHHHHHHH---hchhhHhHHHHHhHHHHHhhccCC--cccC------c------Cchhh-hh-ccccccch
Confidence 77888999999999985 444567788888888876554321 0000 0 00000 00 00000000
Q ss_pred CCCCCcchhhhhhhhhhhHhhhhhhccCccchhhHHHHHHHHhhcCCCCchHHHHHHHHHHHhhhccCCCCCc---cchH
Q 000934 779 PSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSH---EHIE 855 (1219)
Q Consensus 779 ~~~~~~~l~~~a~~~~a~~i~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~laL~~Lgeig~~~~~~~~---~~l~ 855 (1219)
...++.+ +.+|.. ..++ ..+.-|+..|+++.......+. +++.
T Consensus 640 ----~~~~~~~------e~~~I~-------------Tsvl-----------~eK~~A~~~Lv~~a~~lk~~F~pYve~v~ 685 (1075)
T KOG2171|consen 640 ----VVELGDK------ENIGIR-------------TSVL-----------DEKETACEALGEYAKELKEAFAPYVEQVV 685 (1075)
T ss_pred ----hhccCCc------eeeeee-------------ehhH-----------HHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 0000000 001100 0001 1233466677777666544432 3455
Q ss_pred HHHHHhc-CCCchhHhHHHHHHHHhhhh-------cCc-------ccchHHHHHHhccccch--hHHHHHHHHHHHhhcc
Q 000934 856 NVIIESF-QSPFEEIKSAASYALGNIAV-------GNL-------SKFLPFILDQIDNQQKK--QYLLLHSLKEVIVRQS 918 (1219)
Q Consensus 856 ~~ll~~l-~~~~e~vR~aAa~aLG~l~~-------~~~-------~~~lp~il~~l~~~~~~--~~~~l~alkeii~~~~ 918 (1219)
.+.+..+ ...+++||.+|+.+++.+.. +.+ ..+.|..+..+..++.. ...+++++.+++...|
T Consensus 686 ~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G 765 (1075)
T KOG2171|consen 686 ELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMG 765 (1075)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcC
Confidence 5334433 35589999999999998763 111 22345556666666543 5567899999998776
Q ss_pred cc--chhhhhHHHHHHHHHHHhhcc------------CC-----------ccchHhHHHHHHhhhhccCcc-------cc
Q 000934 919 VD--KAEFQDSSVEKILNLLFNHCE------------SE-----------EEGVRNVVAECLGKIALIEPA-------KL 966 (1219)
Q Consensus 919 ~~--~~~~~~~~~~~i~~~L~~~~~------------~~-----------~e~~r~~~ae~LG~l~~~~p~-------~~ 966 (1219)
.. .+..+......+...+..+.. |. +...-+.+.+.++.++..... .+
T Consensus 766 ~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~ 845 (1075)
T KOG2171|consen 766 DNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENF 845 (1075)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHH
Confidence 32 122232233333333332211 11 111224455666666665554 45
Q ss_pred hHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCchhhhchhh
Q 000934 967 VPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLP 1046 (1219)
Q Consensus 967 lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~D~~~~vR~~a~~~L~~~~~~~p~~i~~~l~ 1046 (1219)
.|.+.+++.++.+..|..+++.+..++..++.+.-++-..+++.++..++|.+++||++|.+++|.++...++...+.+.
T Consensus 846 ~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~ 925 (1075)
T KOG2171|consen 846 LPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCS 925 (1075)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 55566667777887899999999999999998888888899999999999999999999999999999999999888888
Q ss_pred hhhHHHHHhhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhhhcCCCchhchHHHHhcccCC--cchhHhhH
Q 000934 1047 ELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLED--HYDVKMPC 1124 (1219)
Q Consensus 1047 ~llp~l~~~~~~~~elir~v~mgpfkh~~Ddgle~Rk~a~e~l~~ll~~~~~~~~~~~~~~~~~~~gl~D--~~di~~l~ 1124 (1219)
..+|.|...... ..- +.....-.+.+|.+|+..++..+..++++.+.+ ++|+..|.= +.+.-...
T Consensus 926 ~~l~~L~~~iq~--~~a----------r~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl-~~~l~~LPl~~D~eEa~~i 992 (1075)
T KOG2171|consen 926 EALPLLVQVLQP--PLA----------RTEENRRATENAIGAIAKILLFNPNRIPVDQVL-PAWLSWLPLKEDKEEAVPI 992 (1075)
T ss_pred HHHHHHHHHHcC--hhh----------hhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHH-HHHHHhCCCccchhhhhhH
Confidence 888888765421 111 112223355699999999999988888899999 799887752 22233355
Q ss_pred HHHHHHHHhhCchhHHH----hHHHhhHHHHhhhcc
Q 000934 1125 HLILSKLADKCPSAVLA----VLDSLVDPLQKTINF 1156 (1219)
Q Consensus 1125 ~~~l~~l~~~~p~~~~~----~l~~l~~~l~~~l~~ 1156 (1219)
|.+|..|....+-.|++ ++..++..+...+..
T Consensus 993 y~~l~~L~e~n~p~v~~~~n~~ip~i~~v~~~~~~~ 1028 (1075)
T KOG2171|consen 993 YTFLSDLYESNHPIVLGPNNQNIPKILSVCAESLAD 1028 (1075)
T ss_pred HHHHHHHHHhCCCeeeCCCcccchHHHHHHHhhhhc
Confidence 66699999988888886 777777777776654
No 4
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=100.00 E-value=2.2e-49 Score=381.46 Aligned_cols=167 Identities=53% Similarity=0.877 Sum_probs=151.4
Q ss_pred hhhhchhhhhhHHHHHhhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhhhcCCCchhchHHHHhcccCCcc
Q 000934 1039 NLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHY 1118 (1219)
Q Consensus 1039 ~~i~~~l~~llp~l~~~~~~~~elir~v~mgpfkh~~Ddgle~Rk~a~e~l~~ll~~~~~~~~~~~~~~~~~~~gl~D~~ 1118 (1219)
++++|+++.++|.+|.+|.+++|+||+|+||||||++|||+|+||+|||||||+|++|.+++|+.+|+ ++++.||+|++
T Consensus 1 ~li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~-~~v~~GL~D~~ 79 (169)
T PF08623_consen 1 DLIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFL-DRVEAGLKDEH 79 (169)
T ss_dssp GGTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHH-HHHHHTTSS-H
T ss_pred CchHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHH-HHHHhhcCCcH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999 69999999999
Q ss_pred hhHhhHHHHHHHHHhhCchhHHHhHHHhhHHHHhhhcccCCcchhhhhhhhHHHHHHHHHHHHHHh-hcccCCCCCh-hH
Q 000934 1119 DVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASL-NQISGGDCSM-KF 1196 (1219)
Q Consensus 1119 di~~l~~~~l~~l~~~~p~~~~~~l~~l~~~l~~~l~~k~k~~~~kqe~e~~~e~~rs~lr~~~~l-~~~~~~~~~~-~~ 1196 (1219)
|||++||+||.||+..+|..+.++||+++++|+++|++|+|++|||||+||++|++||++|++.+| +.+|++++++ +|
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~~ 159 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNKW 159 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-HH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 7889999999 99
Q ss_pred HHHHHHHhcC
Q 000934 1197 KSLMSEISKS 1206 (1219)
Q Consensus 1197 ~~~~~~~~~~ 1206 (1219)
.+||+|+++|
T Consensus 160 ~~f~~~i~~~ 169 (169)
T PF08623_consen 160 NEFVEWIKKN 169 (169)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHHhcC
Confidence 9999998754
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-37 Score=336.72 Aligned_cols=672 Identities=14% Similarity=0.203 Sum_probs=475.7
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHH-----------------------------------hccccCCCChHHHHHHH
Q 000934 4 LQMAAILEKITGKDKDFRYMATSDLLNE-----------------------------------LNKESFKADADLEVKLS 48 (1219)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~-----------------------------------l~~~~~~~~~~~~~~v~ 48 (1219)
..+.++|+.-.|+|++.|-.+..-|-+. +...+..+.......+.
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiK 92 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIK 92 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHH
Confidence 4566667777777777776665554433 22222234456778899
Q ss_pred HHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhH
Q 000934 49 NIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSL 128 (1219)
Q Consensus 49 ~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l 128 (1219)
..+++.+.|+++-+|+.....+..++.+..-..|+++++.|++.+.+++....+.|.-||.++|+..+.
T Consensus 93 s~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~----------- 161 (885)
T KOG2023|consen 93 SECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQ----------- 161 (885)
T ss_pred HHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHH-----------
Confidence 999999999999999999988888888877788999999999999877666678889999999976432
Q ss_pred hHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHH---
Q 000934 129 TPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL--- 205 (1219)
Q Consensus 129 ~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~--- 205 (1219)
.++ . +........+++.++..++++++.+|+.|+.|+..+...-++.+
T Consensus 162 ---~ld---s-----------------------~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~ 212 (885)
T KOG2023|consen 162 ---FLD---S-----------------------DVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVH 212 (885)
T ss_pred ---HHh---h-----------------------hcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHH
Confidence 111 0 00112345677788888999999999999999999998888875
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHh-
Q 000934 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR- 284 (1219)
Q Consensus 206 ~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~- 284 (1219)
++.+++.+...-.+ .++++|+..++++.-+....|+++.||++.||.++++..+ +.|+++ |++|+|.|...
T Consensus 213 iD~Fle~lFalanD--~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tq---d~dE~V---ALEACEFwla~a 284 (885)
T KOG2023|consen 213 IDKFLEILFALAND--EDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQ---DVDENV---ALEACEFWLALA 284 (885)
T ss_pred HHHHHHHHHHHccC--CCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHcc---CcchhH---HHHHHHHHHHHh
Confidence 46667766665433 3468999999999999999999999999999999999887 466665 77788877553
Q ss_pred ----CchhhcccHHHHHHHHHHhcccCCCC----C-CCCCCC--c--cc-------------ccccccchhhccCCCCCC
Q 000934 285 ----CPRDISSYCDEILHLTLEYLSYDPNF----T-DNMEED--S--DD-------------EAYEEEEEDESANEYTDD 338 (1219)
Q Consensus 285 ----~~~~~~~~l~~ii~~~l~~l~~dpn~----~-~~~d~d--~--~~-------------~~~~~~~d~~~~~~~~dd 338 (1219)
|+..+.||+++++|+++.-|.|...- . .++|+. | +| .++.++|||++|++++||
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 55678899999999999999985421 1 111111 1 01 011111122222222345
Q ss_pred CcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhH
Q 000934 339 EDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418 (1219)
Q Consensus 339 dD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 418 (1219)
.++.|.+|+|+|.+|+.+.+.+++ +++..++|.|-+.+...+|.||.+.+-+++++.+ ||.+
T Consensus 365 ~~~dWNLRkCSAAaLDVLanvf~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE---------------GcM~ 426 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANVFGD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAE---------------GCMQ 426 (885)
T ss_pred ccccccHhhccHHHHHHHHHhhHH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHH---------------HHhh
Confidence 567799999999999999998885 5677788998888888889999999999999865 5767
Q ss_pred HHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhc-chhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHH
Q 000934 419 LLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVL-PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLV 497 (1219)
Q Consensus 419 ~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~-~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l 497 (1219)
.+.+++|.+++.+..+|.++.+-+|..+|+ +|+...... ...-..|+..++..+.+.+-|++ -.+..+|+..+..+
T Consensus 427 g~~p~LpeLip~l~~~L~DKkplVRsITCW-TLsRys~wv~~~~~~~~f~pvL~~ll~~llD~N--K~VQEAAcsAfAtl 503 (885)
T KOG2023|consen 427 GFVPHLPELIPFLLSLLDDKKPLVRSITCW-TLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSN--KKVQEAACSAFATL 503 (885)
T ss_pred hcccchHHHHHHHHHHhccCccceeeeeee-eHhhhhhhHhcCChHhhhHHHHHHHHHHHhccc--HHHHHHHHHHHHHH
Confidence 788999999999999999999999966666 444433221 11124588888888888888876 57888999999998
Q ss_pred hccCCCCCchhhhhhhHHHHHHHhcC---CchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhh-hcC
Q 000934 498 LSSHSPPVFHPYIKALSSPVLAAVGE---RYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLT-NQD 573 (1219)
Q Consensus 498 ~~~~~~~~~~~~l~~i~p~l~~~l~d---~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~-~~d 573 (1219)
-+..+ +.+-||+..|+..+..+++- ++-.+-..|++++.+-+... -+-..|++-|++-+++++. -.|
T Consensus 504 eE~A~-~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~--------Ln~~~YiqiLmPPLi~KW~~lsd 574 (885)
T KOG2023|consen 504 EEEAG-EELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHA--------LNKPAYIQILMPPLIEKWELLSD 574 (885)
T ss_pred HHhcc-chhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHh--------cCcHHHHHHhccHHHHHHHhcCc
Confidence 77754 56778999999999998853 33357777777777666431 1335689999999988875 235
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccccch----hhhHHHHHHHhhc------CCch-----H---HHHHHHHHHHhcCCCCC
Q 000934 574 QDQEVKECAISCMGLVISTFGDNLGAE----LPACLPVLVDRMG------NEIT-----R---LTAVKAFAVIAASPLHI 635 (1219)
Q Consensus 574 ~d~~vr~~Ai~alg~l~~~~g~~l~~~----~~~~l~~L~~~L~------~e~~-----r---~~a~~al~~i~~s~~~~ 635 (1219)
.|.++- .-++|++.++..+|..+.|+ +.+++.++...+. +..+ | ..++..+.-++.. ++.
T Consensus 575 ~DKdLf-PLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaeg-Lg~ 652 (885)
T KOG2023|consen 575 SDKDLF-PLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEG-LGS 652 (885)
T ss_pred ccchHH-HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHH-hhh
Confidence 555543 45889999999999888775 5566666653321 1111 1 2333434333311 111
Q ss_pred chhHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHHHHHHHh
Q 000934 636 DLTCVL--EHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLM 713 (1219)
Q Consensus 636 ~~~~~l--~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~ 713 (1219)
..++.+ ..++..+...+...-..+|++++..|+.+...+...+.+ ....+++.+...++.....++..|..++|.++
T Consensus 653 ~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p-~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia 731 (885)
T KOG2023|consen 653 HIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIP-NLADFLPILGANLNPENISVCNNAIWAIGEIA 731 (885)
T ss_pred chHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHhhcCChhhchHHHHHHHHHHHHH
Confidence 223333 235566666677778899999999999999998766554 36777777777777667778889999999987
Q ss_pred hcccCCCchhHhHhhhhHHHHHHHhhhcccchhhHHHHHHHHHHHH
Q 000934 714 ADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALV 759 (1219)
Q Consensus 714 ~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~~~l~ 759 (1219)
.. ..+ ...++...++..++..++.+......+....--++.++
T Consensus 732 ~k--~g~-~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg 774 (885)
T KOG2023|consen 732 LK--MGL-KMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLG 774 (885)
T ss_pred HH--hch-hhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhh
Confidence 64 222 23456677777777777766544443333333333333
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-32 Score=322.94 Aligned_cols=883 Identities=15% Similarity=0.190 Sum_probs=599.0
Q ss_pred cCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhcc-CccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHH
Q 000934 14 TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIK 92 (1219)
Q Consensus 14 ~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~-D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~ 92 (1219)
.+.||+.|.||+--+++.+.+-|-.++.++...+...+|..+. .+.+.||+.-...++.+++..-+..|+++++.|++.
T Consensus 47 ~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~ 126 (1075)
T KOG2171|consen 47 TSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQS 126 (1075)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 4579999999999999999998888999999999999998776 567899999999999999876666999999999999
Q ss_pred hcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhh--hhhhHh---
Q 000934 93 LLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG--NLMSND--- 167 (1219)
Q Consensus 93 ~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g--~~l~~~--- 167 (1219)
+.++++..|+.|..-|..+-+-++. --.++++.+.+.+.+.|++++ ++ ||..++.+++.++.... ....+.
T Consensus 127 ~~S~~~~~rE~al~il~s~~~~~~~--~~~~~~~~l~~lf~q~~~d~s-~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~ 202 (1075)
T KOG2171|consen 127 TKSPNPSLRESALLILSSLPETFGN--TLQPHLDDLLRLFSQTMTDPS-SP-VRVAAVRALGAFAEYLENNKSEVDKFRD 202 (1075)
T ss_pred hcCCCcchhHHHHHHHHhhhhhhcc--ccchhHHHHHHHHHHhccCCc-ch-HHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 9999999999999988887766553 224567889999999999876 44 99999999999998874 222233
Q ss_pred -HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH---HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh-
Q 000934 168 -HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG- 242 (1219)
Q Consensus 168 -~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~- 242 (1219)
.|.++..+-..+.+.+...-+.++.+|..|+...++- ++..++...++...+.+.++..|..+++++.++++.+|
T Consensus 203 llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~ 282 (1075)
T KOG2171|consen 203 LLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPA 282 (1075)
T ss_pred HhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHH
Confidence 4555555555566666677788888888888776654 46777777788777777667899999999999999987
Q ss_pred --hhhccchhhhHHHHHHhhhccCC----------CCh---HHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccC
Q 000934 243 --YRFGPHLGDTVPVLIDYCTSASE----------NDE---ELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYD 307 (1219)
Q Consensus 243 --~~~~~~l~~iip~ll~~~~~~~~----------~d~---elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~d 307 (1219)
++..+|.++++|.++..+...++ ++| .-...|.+++..++...|.. ..++.+++.+-.++.
T Consensus 283 ~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~--~v~p~~~~~l~~~l~-- 358 (1075)
T KOG2171|consen 283 MCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK--QVLPPLFEALEAMLQ-- 358 (1075)
T ss_pred HhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh--hehHHHHHHHHHHhc--
Confidence 45667889999999988764311 111 14567889999998888732 234556666666654
Q ss_pred CCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHH
Q 000934 308 PNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVK 387 (1219)
Q Consensus 308 pn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr 387 (1219)
...|+-|+||..+|+.+.+..++.+...+++++|..+..++|+++.||
T Consensus 359 --------------------------------S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr 406 (1075)
T KOG2171|consen 359 --------------------------------STEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVR 406 (1075)
T ss_pred --------------------------------CCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence 134999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHH-HHHHHHhccc-CccchhhHHHHHHHHHHHhc-chhhhh
Q 000934 388 MDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIV-KSINRQLREK-SIKTKQVGAFSVLRELVVVL-PDCLAD 464 (1219)
Q Consensus 388 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv-~~l~~~L~~~-~~~~r~~~~~~~L~~L~~~~-~~~l~~ 464 (1219)
.+++.+++.+-.... | .++.+....+ +.+...+.+. ++++. ..+...+-.+.+.. ++.+.+
T Consensus 407 ~AA~naigQ~stdl~-------------p--~iqk~~~e~l~~aL~~~ld~~~~~rV~-ahAa~al~nf~E~~~~~~l~p 470 (1075)
T KOG2171|consen 407 YAALNAIGQMSTDLQ-------------P--EIQKKHHERLPPALIALLDSTQNVRVQ-AHAAAALVNFSEECDKSILEP 470 (1075)
T ss_pred HHHHHHHHhhhhhhc-------------H--HHHHHHHHhccHHHHHHhcccCchHHH-HHHHHHHHHHHHhCcHHHHHH
Confidence 999999998865443 2 4444443333 3555555443 34555 44444555444444 556889
Q ss_pred hhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCC----chHHHHHHHHHHHHHH
Q 000934 465 HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGER----YYKVTAEALRVCGELV 540 (1219)
Q Consensus 465 ~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~----~~~v~~~al~~l~~l~ 540 (1219)
|++.++...+..|..+. .+.++..+...++.+.... .+.|.||.+.++|.+...++.. ....+...+.|++.+.
T Consensus 471 YLd~lm~~~l~~L~~~~-~~~v~e~vvtaIasvA~AA-~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 471 YLDGLMEKKLLLLLQSS-KPYVQEQAVTAIASVADAA-QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 99999997777777664 3678999999999998775 4789999999999999999643 3467888888888887
Q ss_pred HhccCCccCCCCCCcccHHHHHHHHHHHhh-hcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhc------
Q 000934 541 RVLRPSVEGLGFDFKPYVQPIYNAIMSRLT-NQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMG------ 613 (1219)
Q Consensus 541 ~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~-~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~------ 613 (1219)
...+. +.|.|+..++++.+...-. ..+.|...|+-.+.+.+.+++..|+.+.|+++.++|-++...+
T Consensus 549 ~AVGk------e~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~ 622 (1075)
T KOG2171|consen 549 RAVGK------EKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVA 622 (1075)
T ss_pred HHhhh------hhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCccc
Confidence 77654 4699999999988877632 2234466788889999999999999999999999998885321
Q ss_pred ----------------------CC-c---------hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH-HHhhhHHH
Q 000934 614 ----------------------NE-I---------TRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFL-RKANRALR 660 (1219)
Q Consensus 614 ----------------------~e-~---------~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L-~~~~~~lr 660 (1219)
+. . -+..|+.+|+.++.-. +..|.||+.++++.....+ ---+..+|
T Consensus 623 ~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~l-k~~F~pYve~v~~l~v~~l~f~fhdgVR 701 (1075)
T KOG2171|consen 623 LSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKEL-KEAFAPYVEQVVELMVPLLKFYFHDGVR 701 (1075)
T ss_pred CcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhhhhHHH
Confidence 01 0 1357788888887442 5678999999998333333 35678899
Q ss_pred HHHHHHHHHHHHHhCCC--CCcch----HHHHHHHHhhhc-CCCChhhhHHHHHHHHHHhhcccCCCch-hHhHhhhhHH
Q 000934 661 QATLGTMNSLVVAYGDK--IGASA----YEVIIVELSTLI-SDSDLHMTALALELCCTLMADKRSSPNV-GLAVRNKVLP 732 (1219)
Q Consensus 661 ~~al~~L~~l~~~~~~~--l~~~~----~~~il~~l~~~l-~~~d~~~~~~al~~l~~l~~~~~~~p~~-~~~~~~~~l~ 732 (1219)
.++++++..++.+.-.+ -.+.. ...+.+.+...+ ++.+..+....++.++...+. ..+.. .......++.
T Consensus 702 ~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~--~G~~~L~~~~~~~~~~ 779 (1075)
T KOG2171|consen 702 KAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEV--MGDNCLNEDGLEALLG 779 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHh--cCcccCCcHHHHHHHH
Confidence 99999999998765331 11122 344444444444 556888888888888888775 22221 1111111111
Q ss_pred HHHHHhhhcccchhhHHHHHHHHHHHHhhcC----CChHHHHHHHhccCCCCCCCcchhhhhhhhhhhHhhhhhhccCcc
Q 000934 733 QALALIKSSLLQGQALVALQSFFAALVYSAN----TSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQ 808 (1219)
Q Consensus 733 ~l~~ll~s~~l~~~~l~al~~~~~~l~~~~~----~~~~~l~~~Ll~~~~~~~~~~~l~~~a~~~~a~~i~~i~~~~~~~ 808 (1219)
.+... +...+........ .....--+..+. . .+ +..+..+...++.++...+.+
T Consensus 780 ~~~~~-------------~l~~~~~~~~r~~~~~eed~d~~eee~~~---e---~d---~~ll~~i~~i~~~l~k~~k~~ 837 (1075)
T KOG2171|consen 780 GLLAQ-------------LLQHFKRMQDRQEEDDEEDDDIEEEEDLD---E---QD---AYLLDAISDILAALAKALKGS 837 (1075)
T ss_pred HHHHH-------------HHHHHHHHHhhhhhhhhhhhhhHHHHHHh---h---hh---HHHHHHHHHHHHHHHHHcccc
Confidence 11111 1111111111110 001101111111 0 00 112222334444443332221
Q ss_pred ---chhhHHHHHHHHhhcCCCCchHHHHHHHHHHHhhhccCCCCC---ccchHHHHHHhcCCCchhHhHHHHHHHHhhhh
Q 000934 809 ---KCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSS---HEHIENVIIESFQSPFEEIKSAASYALGNIAV 882 (1219)
Q Consensus 809 ---~~~~~l~~~~~~l~~~~~~~~~~~~laL~~Lgeig~~~~~~~---~~~l~~~ll~~l~~~~e~vR~aAa~aLG~l~~ 882 (1219)
.+.+..+.+...+.+ +.... |.+++.+++++..+++... +..+.+.++.++.+.+++||++|++.+|-++.
T Consensus 838 f~p~f~~~~p~iv~~l~~--~~~~~-r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq 914 (1075)
T KOG2171|consen 838 FLPFFENFLPLIVKLLKS--KKTVA-RQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQ 914 (1075)
T ss_pred ccHHHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 233445555555542 22333 8899999999877765432 35688889999999999999999999998885
Q ss_pred cCcccchHHHHHHhccccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchHhHHHHHHhhhhccC
Q 000934 883 GNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIE 962 (1219)
Q Consensus 883 ~~~~~~lp~il~~l~~~~~~~~~~l~alkeii~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~e~~r~~~ae~LG~l~~~~ 962 (1219)
-..+.|=|.+.+.+. -|..++. ..+.. .......+.++..|++|++..+
T Consensus 915 ~~g~~y~~v~~~~l~-----------~L~~~iq-------------------~~~ar-~Ee~~~ateNa~gaiaki~~~~ 963 (1075)
T KOG2171|consen 915 FGGEDYAPVCSEALP-----------LLVQVLQ-------------------PPLAR-TEENRRATENAIGAIAKILLFN 963 (1075)
T ss_pred HcCcchHHHHHHHHH-----------HHHHHHc-------------------Chhhh-hHHHhHHHHHHHHHHHHHHHhC
Confidence 433334444433321 0111110 00000 0111123366778888888766
Q ss_pred cccchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHhhcc-CCChHHHHHHHHHHHHHHhcCchhh
Q 000934 963 PAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIK-DQDRHVRRAAVLALSTFAHNKPNLI 1041 (1219)
Q Consensus 963 p~~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~-D~~~~vR~~a~~~L~~~~~~~p~~i 1041 (1219)
|... + +...++.++.+|. .+|.+--.-....|..+..+.+..+
T Consensus 964 ~~~i-----------------------------------~-vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v 1007 (1075)
T KOG2171|consen 964 PNRI-----------------------------------P-VDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIV 1007 (1075)
T ss_pred CccC-----------------------------------c-HHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCee
Confidence 5531 1 2344555555554 2333333444555666677666777
Q ss_pred hchhhhhhHHHHHh
Q 000934 1042 KGLLPELLPLLYDQ 1055 (1219)
Q Consensus 1042 ~~~l~~llp~l~~~ 1055 (1219)
....++.+|.++.-
T Consensus 1008 ~~~~n~~ip~i~~v 1021 (1075)
T KOG2171|consen 1008 LGPNNQNIPKILSV 1021 (1075)
T ss_pred eCCCcccchHHHHH
Confidence 77667777777654
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-29 Score=276.39 Aligned_cols=746 Identities=16% Similarity=0.228 Sum_probs=481.3
Q ss_pred HHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhH
Q 000934 51 VVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTP 130 (1219)
Q Consensus 51 ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p 130 (1219)
|++.-.+||+++|+.+..-+.++-. .++.-+.++-.| ....+.+...|..|.+-||.-+..-.. .+...+
T Consensus 18 lLk~s~Spn~~~~~~~~~~leq~~~--~pdfnnYL~~IL-~~~~~~d~~~Rs~aGLlLKNnvr~~~~-~~~~~~------ 87 (885)
T KOG2023|consen 18 LLKNSQSPNSETRNNVQEKLEQFNL--FPDFNNYLIYIL-IRAKSEDVPTRSLAGLLLKNNVRGHYN-SIPSEV------ 87 (885)
T ss_pred HHHhccCCChHHHHHHHHHHHHHhc--ccchhceeeEEE-ecccccchhHHHHhhhhHhcccccccc-CCChHH------
Confidence 4455568999999999877776643 121212222112 222233445677777777754422111 111111
Q ss_pred HHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q 000934 131 QLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKAT 210 (1219)
Q Consensus 131 ~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~ 210 (1219)
...+-..+++.+.++++-||......+..++..-+-..+..++
T Consensus 88 -------------------------------------~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelL 130 (885)
T KOG2023|consen 88 -------------------------------------LDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELL 130 (885)
T ss_pred -------------------------------------HHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHH
Confidence 1223334455566666677766666666666555555677888
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhc-----cchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhC
Q 000934 211 IEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFG-----PHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1219)
Q Consensus 211 ~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~-----~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1219)
|.+.+.|.+++. ...+.++.++..|++-.+..+. ..+.-++|.++++.++ ..+.+|..|+.+++.++-..
T Consensus 131 p~L~~~L~s~d~--n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h---~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 131 PQLCELLDSPDY--NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH---PSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred HHHHHHhcCCcc--cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC---CChhHHHHHHhhhhheeecC
Confidence 888888877664 3567888888888887665443 4688899999999984 68999999999999998877
Q ss_pred chhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhH
Q 000934 286 PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLS 365 (1219)
Q Consensus 286 ~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~ 365 (1219)
+..+--++++.+..+...-. | .+..||+-.|+++.-+++.+|+.+.
T Consensus 206 ~qal~~~iD~Fle~lFalan-D---------------------------------~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALAN-D---------------------------------EDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred cHHHHHHHHHHHHHHHHHcc-C---------------------------------CCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 77666666666666654431 1 1127999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcc--------
Q 000934 366 KLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE-------- 437 (1219)
Q Consensus 366 ~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~-------- 437 (1219)
+++..++..++.+.+|.+|+|..++++.|.++.++.. |...|.++++.+++.+...+.-
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi-------------~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL 318 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPI-------------CKEVLQPYLDKLIPVLLSGMVYSDDDIILL 318 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcC-------------cHHHHHHHHHHHHHHHHccCccccccHHHh
Confidence 9999999999999999999999999999999988753 5668899999999988765420
Q ss_pred ---c---------------------------------------------CccchhhHHHHHHHHHHHhcchhhhhhhhhh
Q 000934 438 ---K---------------------------------------------SIKTKQVGAFSVLRELVVVLPDCLADHIGSL 469 (1219)
Q Consensus 438 ---~---------------------------------------------~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l 469 (1219)
. .|..| .....+|.-|+..++. +.++.+
T Consensus 319 ~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLR-kCSAAaLDVLanvf~~---elL~~l 394 (885)
T KOG2023|consen 319 KNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLR-KCSAAALDVLANVFGD---ELLPIL 394 (885)
T ss_pred cCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHh-hccHHHHHHHHHhhHH---HHHHHH
Confidence 0 14556 5555677777776553 357778
Q ss_pred hHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccC
Q 000934 470 IPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEG 549 (1219)
Q Consensus 470 ~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~ 549 (1219)
+|.+...|... .+.+|.++.-++|++.+++- +.+.||++.++|.++..+.|+.+-||+-..++++.+...+-..
T Consensus 395 ~PlLk~~L~~~--~W~vrEagvLAlGAIAEGcM-~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~--- 468 (885)
T KOG2023|consen 395 LPLLKEHLSSE--EWKVREAGVLALGAIAEGCM-QGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD--- 468 (885)
T ss_pred HHHHHHHcCcc--hhhhhhhhHHHHHHHHHHHh-hhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC---
Confidence 88888888753 37889999999999999874 6899999999999999999999999999999999998775332
Q ss_pred CCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCCchHHHHHHHHHHHh
Q 000934 550 LGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIA 629 (1219)
Q Consensus 550 ~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~ 629 (1219)
.-..|+.+++..++.++- |....|+++|+.+++.+....|+.+-||+..++..|...
T Consensus 469 ---~~~~~f~pvL~~ll~~ll--D~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~a------------------ 525 (885)
T KOG2023|consen 469 ---SRDEYFKPVLEGLLRRLL--DSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFA------------------ 525 (885)
T ss_pred ---ChHhhhHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH------------------
Confidence 234677888888887776 556789999999999999988887767666555554322
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcch-HHHHHHHHh---hhcCCCChhhhHHH
Q 000934 630 ASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASA-YEVIIVELS---TLISDSDLHMTALA 705 (1219)
Q Consensus 630 ~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~-~~~il~~l~---~~l~~~d~~~~~~a 705 (1219)
+..|-+|+-.-+. .++++++.++|.++.... ++-+++-+. ..++++|..
T Consensus 526 ------------------f~kYQ~KNLlILY----DAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKd----- 578 (885)
T KOG2023|consen 526 ------------------FGKYQKKNLLILY----DAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKD----- 578 (885)
T ss_pred ------------------HHHHhhcceehHH----HHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccch-----
Confidence 2333344443333 677888888877665432 333333332 223333333
Q ss_pred HHHHHHHhhcccCCCchhHhHhhhhHHHHHHHhhhcccchhhHHHHHHHHHHHHhhcCCChHHHHHHHhccCCCCCCCcc
Q 000934 706 LELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGG 785 (1219)
Q Consensus 706 l~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~~~l~~~~~~~~~~l~~~Ll~~~~~~~~~~~ 785 (1219)
+-++++|+..++.+-+.+|.++.+..
T Consensus 579 ------------------------------------------LfPLLEClSsia~AL~~gF~P~~~~V------------ 604 (885)
T KOG2023|consen 579 ------------------------------------------LFPLLECLSSIASALGVGFLPYAQPV------------ 604 (885)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHhccccccCHHH------------
Confidence 33344444444433322222221111
Q ss_pred hhhhhhhhhhhHhhhhhhccCccchhhHHHHHHHHhhcC-----CCCchHHHHHHHHH-HHh-hhccC-CCCCccchHHH
Q 000934 786 VAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDD-----SSTNSAKQHLALLC-LGE-IGRRK-DLSSHEHIENV 857 (1219)
Q Consensus 786 l~~~a~~~~a~~i~~i~~~~~~~~~~~~l~~~~~~l~~~-----~~~~~~~~~laL~~-Lge-ig~~~-~~~~~~~l~~~ 857 (1219)
..||+..+. .++... .....+ |..+--...+.|.+ |.| +|.++ ++.....+.+.
T Consensus 605 --------y~Rc~~il~---------~t~q~~-~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~l 666 (885)
T KOG2023|consen 605 --------YQRCFRILQ---------KTLQLL-AKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDL 666 (885)
T ss_pred --------HHHHHHHHH---------HHHHHH-HhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHH
Confidence 112221110 000000 000000 00000000111111 111 34444 23233568999
Q ss_pred HHHhcCCCchhHhHHHHHHHHhhhh-------cCcccchHHHHHHhcccc-chhHHHHHHHHHHHhhccccchhhhhHHH
Q 000934 858 IIESFQSPFEEIKSAASYALGNIAV-------GNLSKFLPFILDQIDNQQ-KKQYLLLHSLKEVIVRQSVDKAEFQDSSV 929 (1219)
Q Consensus 858 ll~~l~~~~e~vR~aAa~aLG~l~~-------~~~~~~lp~il~~l~~~~-~~~~~~l~alkeii~~~~~~~~~~~~~~~ 929 (1219)
++.++.++-++||++|.+-||.++. ++.+.|+|.+..++..+. ..-.-+.+|++|+..+.+ ....+|+
T Consensus 667 ll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g----~~~~~~v 742 (885)
T KOG2023|consen 667 LLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMG----LKMKQYV 742 (885)
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc----hhhhhHH
Confidence 9999999999999999999999984 466778888887765542 334567899999988764 3455788
Q ss_pred HHHHHHHHhhccCCc--cchHhHHHHHHhhhhccCcccchHHHHHHhc--------CCCchhhHHHHhhhHhhhccCCch
Q 000934 930 EKILNLLFNHCESEE--EGVRNVVAECLGKIALIEPAKLVPALKVRTT--------SSAAFTRATVVIAIKYSIVERPEK 999 (1219)
Q Consensus 930 ~~i~~~L~~~~~~~~--e~~r~~~ae~LG~l~~~~p~~~lp~l~~~l~--------~~~~~~R~~~~~~~k~~~~~~~~~ 999 (1219)
..++..|+..++.+. -.+-...|-.+|||+.++|+.+-|++....+ .....++..+...+..++.-.+..
T Consensus 743 ~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~ 822 (885)
T KOG2023|consen 743 SPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSG 822 (885)
T ss_pred HHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchh
Confidence 888888887766432 2344677889999999999999998888531 122334444444555555555443
Q ss_pred hhhhhhHhHHHHHhhccCCChHHHHHHHHHHHH
Q 000934 1000 IDEIIFPEISSFLMLIKDQDRHVRRAAVLALST 1032 (1219)
Q Consensus 1000 ~~~~l~~~i~~~l~~l~D~~~~vR~~a~~~L~~ 1032 (1219)
+-. ...++-..+....++..++|..-...|..
T Consensus 823 vv~-~~~f~c~aiAsw~np~~~l~~~f~kiL~g 854 (885)
T KOG2023|consen 823 VVS-SFIFICDAIASWSNPEDDLRDEFYKILQG 854 (885)
T ss_pred hhh-hhHHHHHHHhcccChHHHHHHHHHHHHHH
Confidence 221 11233344444556666666655555544
No 8
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-28 Score=271.46 Aligned_cols=677 Identities=15% Similarity=0.215 Sum_probs=492.9
Q ss_pred CcchhhhhHHHHHHHhcc-----------ccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhh-hcChhhHHH
Q 000934 17 DKDFRYMATSDLLNELNK-----------ESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK-KVSEPRVVE 84 (1219)
Q Consensus 17 d~d~R~mAl~dL~~~l~~-----------~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~-~~~~~~~~~ 84 (1219)
..+.|..|.--|+|.|.. .|+.++.+.-+.|...+++.|..|-+.+.+.|..|++.++. .+|.++|+.
T Consensus 50 ~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~ 129 (859)
T KOG1241|consen 50 SDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPE 129 (859)
T ss_pred cHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHH
Confidence 345677788888887753 24678888899999999999999999999999999999986 589999999
Q ss_pred HHHHHHHHhcCCCcc-hhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhh
Q 000934 85 MTDKLCIKLLNGKDQ-HRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1219)
Q Consensus 85 l~~~L~~~~~~~~~~-~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~ 163 (1219)
++..|..++.++.+. +++.+..||+.+|+++.+ +........++..+.+|+...+++..||..++.+|-+-++-.+..
T Consensus 130 li~~lv~nv~~~~~~~~k~~slealGyice~i~p-evl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~n 208 (859)
T KOG1241|consen 130 LIVTLVSNVGEEQASMVKESSLEALGYICEDIDP-EVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKAN 208 (859)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHccCCH-HHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 999999999876554 789999999999999887 344556778899999999998888999999999998888877766
Q ss_pred hh--HhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000934 164 MS--NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL----LAKATIEVVRNLRSKGAKPEMIRTNIQMVGAL 237 (1219)
Q Consensus 164 l~--~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~----~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l 237 (1219)
+. .+...+++.+...-++++..||.+|+.||..+....-+-. .+.+....++.+++++ +++.-.+++.++++
T Consensus 209 F~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~--deValQaiEFWsti 286 (859)
T KOG1241|consen 209 FNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDN--DEVALQAIEFWSTI 286 (859)
T ss_pred hccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHH
Confidence 65 3467789999999999999999999999999887543331 2335555566777554 47888899999988
Q ss_pred HHH-------hhhhhccc------------hhhhHHHHHHhhhccCC----CChHHHHHHHHHHHHHHHhCchhhcccHH
Q 000934 238 SRA-------VGYRFGPH------------LGDTVPVLIDYCTSASE----NDEELREYSLQALESFLLRCPRDISSYCD 294 (1219)
Q Consensus 238 ~~~-------~~~~~~~~------------l~~iip~ll~~~~~~~~----~d~elre~al~~l~~l~~~~~~~~~~~l~ 294 (1219)
|.. .+..+..+ ++.++|.+++.+..+++ ||-....+|-.+|+.++..|+..+-|
T Consensus 287 ceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~--- 363 (859)
T KOG1241|consen 287 CEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP--- 363 (859)
T ss_pred HHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh---
Confidence 863 12233333 34899999999886532 22237788888899999999865543
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcC-chhhHHHHHHHHH
Q 000934 295 EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR-PEMLSKLYEEACP 373 (1219)
Q Consensus 295 ~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~-~~~l~~~~~~i~p 373 (1219)
.++.|++. |. ...+|+=|.+|+-+++.++... ++.+.++....+|
T Consensus 364 ----~Vl~Fiee--~i----------------------------~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp 409 (859)
T KOG1241|consen 364 ----HVLPFIEE--NI----------------------------QNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP 409 (859)
T ss_pred ----hhHHHHHH--hc----------------------------CCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence 44444420 00 0124999999999999998764 5788889999999
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHH
Q 000934 374 KLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRE 453 (1219)
Q Consensus 374 ~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~ 453 (1219)
.++..+.|..-.||..+..+++.+.+.... .-++ ..+++.++..+...|++. +++. ..+...+-.
T Consensus 410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e---------~~~n----~~~l~~~l~~l~~gL~De-Prva-~N~CWAf~~ 474 (859)
T KOG1241|consen 410 SIINLMSDPSLWVKDTAAWTLGRIADFLPE---------AIIN----QELLQSKLSALLEGLNDE-PRVA-SNVCWAFIS 474 (859)
T ss_pred HHHHHhcCchhhhcchHHHHHHHHHhhchh---------hccc----HhhhhHHHHHHHHHhhhC-chHH-HHHHHHHHH
Confidence 999999999888998888999999876421 0011 346677788888888764 4455 566667777
Q ss_pred HHHhcchh---------hhhhhhhhhHhHHHhhcCCC-CcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhc-
Q 000934 454 LVVVLPDC---------LADHIGSLIPGIEKSLNDKS-STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG- 522 (1219)
Q Consensus 454 L~~~~~~~---------l~~~~~~l~~~l~~~l~d~~-~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~- 522 (1219)
|++..+.. ..++++.|+..++..-.... +.+++|..+...|..+++.. +....|-+.++.+.+...++
T Consensus 475 Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~s-t~~vy~~v~~~~l~il~kl~q 553 (859)
T KOG1241|consen 475 LAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNS-TDDVYPMVQKLTLVILEKLDQ 553 (859)
T ss_pred HHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHH
Confidence 77654321 23477777777776654322 34689999999999999874 56666767777777666443
Q ss_pred ----------CC--chHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 000934 523 ----------ER--YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVI 590 (1219)
Q Consensus 523 ----------d~--~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~ 590 (1219)
|+ ...+.+--+.+++.+.+.+++ ++.++.+.+|..++..+.... ..-+.+.|+.+++.++
T Consensus 554 ~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-------~~~~~~d~iM~lflri~~s~~-s~~v~e~a~laV~tl~ 625 (859)
T KOG1241|consen 554 TISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-------DIREVSDQIMGLFLRIFESKR-SAVVHEEAFLAVSTLA 625 (859)
T ss_pred HHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-------cchhHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHHH
Confidence 11 113444445666777666543 678899999999999987632 3557899999999999
Q ss_pred HhhcccccchhhhHHHHHHHhhcCCchH---HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHh--hhHHHHHHHH
Q 000934 591 STFGDNLGAELPACLPVLVDRMGNEITR---LTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKA--NRALRQATLG 665 (1219)
Q Consensus 591 ~~~g~~l~~~~~~~l~~L~~~L~~e~~r---~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~--~~~lr~~al~ 665 (1219)
.++|..|..|++...|.|...|+|..-+ .+|+..+|.++.+ ...++-||...++..|...|+++ +|.+|...+.
T Consensus 626 ~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ra-L~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS 704 (859)
T KOG1241|consen 626 ESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARA-LEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILS 704 (859)
T ss_pred HHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHccCccccccccchHHH
Confidence 9999999999999999999999886544 4567777777755 46688999999999999999866 6999999999
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHhhh---cCCC-C-------hhhhHHHHHHHHHHhhcccCCCchhHhHhhhhHHHH
Q 000934 666 TMNSLVVAYGDKIGASAYEVIIVELSTL---ISDS-D-------LHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQA 734 (1219)
Q Consensus 666 ~L~~l~~~~~~~l~~~~~~~il~~l~~~---l~~~-d-------~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l 734 (1219)
+++.|+.+.|.++.+ +++.+++-+... -.++ | ..++..++++..-+++.. .-+........++|.+
T Consensus 705 ~FgDIAlaIg~~F~~-Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qgl--k~~~~~~~~~p~v~~I 781 (859)
T KOG1241|consen 705 VFGDIALAIGADFEP-YLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGL--KTHADVMLVQPYVPHI 781 (859)
T ss_pred HHHHHHHHHHHhHHH-HHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHh--hcccchhhhhcchHHH
Confidence 999999999987654 355555544221 1222 1 135667777766666531 1111122333455555
Q ss_pred HHHhh----hcccchhhHHHHHHHHHHHHhh
Q 000934 735 LALIK----SSLLQGQALVALQSFFAALVYS 761 (1219)
Q Consensus 735 ~~ll~----s~~l~~~~l~al~~~~~~l~~~ 761 (1219)
+.+++ .+...+....+.+.+++.++..
T Consensus 782 ~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~ 812 (859)
T KOG1241|consen 782 ISFIDRIAAEPDVSEALHAAALGLIGDLATM 812 (859)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 55543 2333344445555566555543
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9e-24 Score=238.43 Aligned_cols=598 Identities=16% Similarity=0.257 Sum_probs=412.3
Q ss_pred CchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhccccCCCChHHHHH-HHHHHHHhccCccchhhHHHHHHHHHHhhhc
Q 000934 1 MANLQMAAILEKITG--KDKDFRYMATSDLLNELNKESFKADADLEVK-LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKV 77 (1219)
Q Consensus 1 ~~~~~l~~ll~~~~~--~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~-v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~ 77 (1219)
|++-.+..+++.|+. ++.++|+.|++.|++.|....-+++.+.++. +++.+....+.|+.+||..|..||..++.-.
T Consensus 169 ~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~Ly 248 (859)
T KOG1241|consen 169 QSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLY 248 (859)
T ss_pred HHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHH
Confidence 456788899999865 6789999999999998876443344455555 6677889999999999999999999998654
Q ss_pred ChhhHHHHHH-HHHHHhcCC-CcchhhHHHHHHH---HHHhhcCChhhhHHHHHhHhHHHHH---hhhccCCChhHHHHH
Q 000934 78 SEPRVVEMTD-KLCIKLLNG-KDQHRDIASIALK---TIIAEVTTSSLAQSIHTSLTPQLTK---GITLKDMNTEIRCEC 149 (1219)
Q Consensus 78 ~~~~~~~l~~-~L~~~~~~~-~~~~r~~a~~aL~---~~i~~~~~~~~~~~~~~~l~p~L~~---~l~~~~~~~~v~~~a 149 (1219)
.+ ++.+++. .|+...... +++.-+++..|+. ++|++ =+....+ ...... .+.-.
T Consensus 249 Y~-~m~~yM~~alfaitl~amks~~deValQaiEFWsticeE-------------EiD~~~e~~e~~d~~~-~p~~~--- 310 (859)
T KOG1241|consen 249 YE-FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEE-------------EIDLAIEYGEAVDQGL-PPSSK--- 310 (859)
T ss_pred HH-HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhcCC-Cchhh---
Confidence 43 3444444 366554321 2344467777765 23331 1111110 011110 01000
Q ss_pred HHHHHHHHHHhhhh-hhHhHHHHHHHHhhhh---cCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChH
Q 000934 150 LDILCDVLHKFGNL-MSNDHERLLSALLPQL---SANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPE 225 (1219)
Q Consensus 150 l~~L~~l~~~~g~~-l~~~~~~l~~~ll~~l---~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~ 225 (1219)
+|... +....|.+++.+..+= .+++|.+-|.|..||..++..++|++.+.++|.+-+.+++|+| .
T Consensus 311 ---------~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdw--r 379 (859)
T KOG1241|consen 311 ---------YFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDW--R 379 (859)
T ss_pred ---------HHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcch--h
Confidence 11110 1112244444444322 2245799999999999999999999999999999999999998 5
Q ss_pred HHHHHHHHHHHHHHH-hhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcc--cHHHHHHHHHH
Q 000934 226 MIRTNIQMVGALSRA-VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISS--YCDEILHLTLE 302 (1219)
Q Consensus 226 ~~~~~i~~l~~l~~~-~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~--~l~~ii~~~l~ 302 (1219)
.|+.++-+||++... .+.++.|+.++.+|.++..+. |..--+|+++.++|+.++..+|....+ |+..+++.+++
T Consensus 380 ~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~---D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~ 456 (859)
T KOG1241|consen 380 NREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS---DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLE 456 (859)
T ss_pred hhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc---CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHH
Confidence 889999999999875 457899999999999999887 466678999999999999999965543 77888999988
Q ss_pred hcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhhh--
Q 000934 303 YLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS-RPEMLSKLYEEACPKLIDRF-- 379 (1219)
Q Consensus 303 ~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~-~~~~l~~~~~~i~p~Li~~~-- 379 (1219)
.+...|+... ..+|..-.-|-.+-.+.... ..+...++|+.++..|++.-
T Consensus 457 gL~DePrva~---------------------------N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr 509 (859)
T KOG1241|consen 457 GLNDEPRVAS---------------------------NVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDR 509 (859)
T ss_pred HhhhCchHHH---------------------------HHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccc
Confidence 8874443210 11333222222222222222 11233468888888887543
Q ss_pred -cccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhccc--Cccch-h----hH-HHHH
Q 000934 380 -KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREK--SIKTK-Q----VG-AFSV 450 (1219)
Q Consensus 380 -~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~--~~~~r-~----~~-~~~~ 450 (1219)
.-.+-+.|..++++|.++++..-. .+...+...++.+...+.+.+.+. +...| + ++ -+..
T Consensus 510 ~dgnqsNLR~AAYeALmElIk~st~-----------~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~ 578 (859)
T KOG1241|consen 510 ADGNQSNLRSAAYEALMELIKNSTD-----------DVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNT 578 (859)
T ss_pred cccchhhHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHH
Confidence 113567999999999999986421 122234455555555555555421 11111 0 12 2345
Q ss_pred HHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHh-cCCchHHH
Q 000934 451 LRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAV-GERYYKVT 529 (1219)
Q Consensus 451 L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l-~d~~~~v~ 529 (1219)
|+.+....++...+..+.++..+++.++.+ .+..+..+++..+++++.+.+ ..|..|++.+.|.+...+ +-..|.|.
T Consensus 579 Lq~i~rk~~~~~~~~~d~iM~lflri~~s~-~s~~v~e~a~laV~tl~~~Lg-~~F~kym~~f~pyL~~gL~n~~e~qVc 656 (859)
T KOG1241|consen 579 LQSIIRKVGSDIREVSDQIMGLFLRIFESK-RSAVVHEEAFLAVSTLAESLG-KGFAKYMPAFKPYLLMGLSNFQEYQVC 656 (859)
T ss_pred HHHHHHHccccchhHHHHHHHHHHHHHcCC-ccccchHHHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 666666666666778888999999998863 235688899999999998875 579999999999999999 44577899
Q ss_pred HHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHH
Q 000934 530 AEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLV 609 (1219)
Q Consensus 530 ~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~ 609 (1219)
..|++.++++++.+. .++.||.+.++..+++.|++...+.+||-.-++|.|.++...|..|.+|+..+++++-
T Consensus 657 ~~aVglVgdl~raL~-------~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq 729 (859)
T KOG1241|consen 657 AAAVGLVGDLARALE-------DDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQ 729 (859)
T ss_pred HHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999984 4799999999999999999988899999999999999999999999999999999997
Q ss_pred Hhhc-------CC------chHHHHHHHHHHHh-cCCC--CCc-hhHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHH
Q 000934 610 DRMG-------NE------ITRLTAVKAFAVIA-ASPL--HID-LTCVLEHVIAELTAFLRK--ANRALRQATLGTMNSL 670 (1219)
Q Consensus 610 ~~L~-------~e------~~r~~a~~al~~i~-~s~~--~~~-~~~~l~~~l~~L~~~L~~--~~~~lr~~al~~L~~l 670 (1219)
..-+ .+ ..|.+++.+..-|. +-.. +.. +.||++.++..+...-.. .+..+...++..|+.|
T Consensus 730 ~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL 809 (859)
T KOG1241|consen 730 QASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDL 809 (859)
T ss_pred HHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 6431 11 24777777765443 1111 111 256666666554443332 2367889999999999
Q ss_pred HHHhCCC
Q 000934 671 VVAYGDK 677 (1219)
Q Consensus 671 ~~~~~~~ 677 (1219)
+..+|+.
T Consensus 810 ~~~fg~~ 816 (859)
T KOG1241|consen 810 ATMFGKG 816 (859)
T ss_pred HHHcccc
Confidence 9999865
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.91 E-value=3.5e-18 Score=186.63 Aligned_cols=604 Identities=13% Similarity=0.170 Sum_probs=421.2
Q ss_pred CCcchhhhhHHHHHHHhcc-----------ccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhh-hcChhhHH
Q 000934 16 KDKDFRYMATSDLLNELNK-----------ESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK-KVSEPRVV 83 (1219)
Q Consensus 16 ~d~d~R~mAl~dL~~~l~~-----------~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~-~~~~~~~~ 83 (1219)
..+..|..|.--|+|.|.. .|..+..+.-.+|....++.|.+|.+..-+.|...++.++. .++...|+
T Consensus 53 s~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp 132 (858)
T COG5215 53 SNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWP 132 (858)
T ss_pred CcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccch
Confidence 4456788888888888754 24557778888999999999999999999999999999987 58889999
Q ss_pred HHHHHHHHHhcCCCcc-hhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhh
Q 000934 84 EMTDKLCIKLLNGKDQ-HRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1219)
Q Consensus 84 ~l~~~L~~~~~~~~~~-~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~ 162 (1219)
.++..+...+.++.+. ....+..+++..|+.-.+ +........++-.+..+-.+.+++..||..++.+|.+-+.....
T Consensus 133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~ 211 (858)
T COG5215 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQG 211 (858)
T ss_pred HHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988765443 334455566666765443 23233455666666666666666889999999999885444433
Q ss_pred hhh--HhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH-----HHHhhcCCCChHHHHHHHHHHH
Q 000934 163 LMS--NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEV-----VRNLRSKGAKPEMIRTNIQMVG 235 (1219)
Q Consensus 163 ~l~--~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l-----l~~l~~~~~~~~~~~~~i~~l~ 235 (1219)
.+. .....+++.....-+.++..+..+|+.|+..+....-+ +.+..|+.. .+.+++++ +++...+++.++
T Consensus 212 nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~-fm~~ymE~aL~alt~~~mks~n--d~va~qavEfWs 288 (858)
T COG5215 212 NFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYK-FMQSYMENALAALTGRFMKSQN--DEVAIQAVEFWS 288 (858)
T ss_pred hhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcc--hHHHHHHHHHHH
Confidence 333 34677888888888999999999999999988865422 222333332 33344554 378888999999
Q ss_pred HHHHHh----------h------hhhcc-chhhhHHHHHHhhhccC----CCChHHHHHHHHHHHHHHHhCchhhcccHH
Q 000934 236 ALSRAV----------G------YRFGP-HLGDTVPVLIDYCTSAS----ENDEELREYSLQALESFLLRCPRDISSYCD 294 (1219)
Q Consensus 236 ~l~~~~----------~------~~~~~-~l~~iip~ll~~~~~~~----~~d~elre~al~~l~~l~~~~~~~~~~~l~ 294 (1219)
.+|..- | +.|.. .+.+++|-+++.+..++ +||-.+..+|-.+++.|+..|+.
T Consensus 289 ticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd------- 361 (858)
T COG5215 289 TICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD------- 361 (858)
T ss_pred HHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-------
Confidence 998742 1 11111 25678999999887643 33445778888889999998884
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHH
Q 000934 295 EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP-EMLSKLYEEACP 373 (1219)
Q Consensus 295 ~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~-~~l~~~~~~i~p 373 (1219)
.++.-++.|+.. |. ...+|.=|.+|+.+++++....- +.+..+.+..+|
T Consensus 362 ~i~~pVl~FvEq--ni----------------------------~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp 411 (858)
T COG5215 362 KIMRPVLGFVEQ--NI----------------------------RSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALP 411 (858)
T ss_pred HhHHHHHHHHHH--hc----------------------------cCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhH
Confidence 333334444421 10 01259999999999999987643 567778889999
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHH
Q 000934 374 KLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRE 453 (1219)
Q Consensus 374 ~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~ 453 (1219)
.++..+.|.---|+.....|++.+..+.... -.| ..+++..+.+....+.|. ++.. ..|....-.
T Consensus 412 ~i~n~m~D~~l~vk~ttAwc~g~iad~va~~---------i~p----~~Hl~~~vsa~liGl~D~-p~~~-~ncsw~~~n 476 (858)
T COG5215 412 GIENEMSDSCLWVKSTTAWCFGAIADHVAMI---------ISP----CGHLVLEVSASLIGLMDC-PFRS-INCSWRKEN 476 (858)
T ss_pred HHHHhcccceeehhhHHHHHHHHHHHHHHHh---------cCc----cccccHHHHHHHhhhhcc-chHH-hhhHHHHHh
Confidence 9988888777678877778888887654210 011 234566666666556553 3333 555555556
Q ss_pred HHHhcch-------hhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhc----
Q 000934 454 LVVVLPD-------CLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG---- 522 (1219)
Q Consensus 454 L~~~~~~-------~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~---- 522 (1219)
++.+++. .+.++.+.|+..+...-+-..+.++.|...+..|+.++.-+ |+...+.+..+...+.+.+.
T Consensus 477 lv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~-~d~V~~~~a~~~~~~~~kl~~~is 555 (858)
T COG5215 477 LVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC-PDAVSDILAGFYDYTSKKLDECIS 555 (858)
T ss_pred HHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHHH
Confidence 6655543 34556666776666654433344678999999999998765 45666655555555554442
Q ss_pred ---------CC--chHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 000934 523 ---------ER--YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVIS 591 (1219)
Q Consensus 523 ---------d~--~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~ 591 (1219)
|. ..++.+.-+.++..+++..++ +..+.-+.|+..++..+..++ ...+-.-.+.++|.+..
T Consensus 556 v~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~-------~ie~v~D~lm~Lf~r~les~~-~t~~~~dV~~aIsal~~ 627 (858)
T COG5215 556 VLGQILATEDQLLVEELQSNYIGVLEAIIRTRRR-------DIEDVEDQLMELFIRILESTK-PTTAFGDVYTAISALST 627 (858)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-------CcccHHHHHHHHHHHHHhccC-CchhhhHHHHHHHHHHH
Confidence 11 124555566777777766544 456667778888888887653 23445666888899988
Q ss_pred hhcccccchhhhHHHHHHHhhcCCch---HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHh--hhHHHHHHHHH
Q 000934 592 TFGDNLGAELPACLPVLVDRMGNEIT---RLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKA--NRALRQATLGT 666 (1219)
Q Consensus 592 ~~g~~l~~~~~~~l~~L~~~L~~e~~---r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~--~~~lr~~al~~ 666 (1219)
.+++.+..|.+...|.+.+.+ |+.. ...|+..++.++++ .+.+|.+|....+..|.+.|+++ +|.+|.+.+.+
T Consensus 628 sl~e~Fe~y~~~fiPyl~~al-n~~d~~v~~~avglvgdlant-l~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSv 705 (858)
T COG5215 628 SLEERFEQYASKFIPYLTRAL-NCTDRFVLNSAVGLVGDLANT-LGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSV 705 (858)
T ss_pred HHHHHHHHHHhhhhHHHHHHh-cchhHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHH
Confidence 899999999999999999998 4443 35677778888865 46789999999999999999865 78999999999
Q ss_pred HHHHHHHhCCCCCcchHHHHH
Q 000934 667 MNSLVVAYGDKIGASAYEVII 687 (1219)
Q Consensus 667 L~~l~~~~~~~l~~~~~~~il 687 (1219)
++.|+.+.|+.+.+ +++.++
T Consensus 706 FgDIAlaiga~F~~-YL~~im 725 (858)
T COG5215 706 FGDIALAIGANFES-YLDMIM 725 (858)
T ss_pred HHHHHHHHhhhHHH-HHHHHH
Confidence 99999999886543 344444
No 11
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.90 E-value=8.9e-18 Score=188.15 Aligned_cols=741 Identities=16% Similarity=0.195 Sum_probs=447.9
Q ss_pred cCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCC--CcchhhHHHHHHHHHHh
Q 000934 36 SFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG--KDQHRDIASIALKTIIA 113 (1219)
Q Consensus 36 ~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~--~~~~r~~a~~aL~~~i~ 113 (1219)
.+..++..++++...||+.= ..++--|..|.+.|..-+...+. .++.++++..+.+. .++.|..-...+..++-
T Consensus 354 ~L~~~e~kEr~i~~llLkvK-NG~ppmRk~~LR~ltdkar~~ga---~~lfnqiLpllMs~tLeDqerhllVkvidriLy 429 (1172)
T KOG0213|consen 354 LLEDEEGKERKIMRLLLKVK-NGTPPMRKSALRILTDKARNFGA---GPLFNQILPLLMSPTLEDQERHLLVKVIDRILY 429 (1172)
T ss_pred hcCcccccHHHHHHHHHhhc-CCCchhHHHHHHHHHHHHHhhcc---HHHHHHHHHHHcCccccchhhhhHHHHHHHHHH
Confidence 34445567888888887654 45677888998888765543332 34455555444433 23344433333334443
Q ss_pred hcCChhhhHHHHHhHh----HHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHH
Q 000934 114 EVTTSSLAQSIHTSLT----PQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKK 189 (1219)
Q Consensus 114 ~~~~~~~~~~~~~~l~----p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~ 189 (1219)
.+. .+..++.++|+ |.+.. ++...+.+.-++++.|....|- ..++..+-+.+.+.+.-||..
T Consensus 430 klD--dlvrpYVhkILvViepllid------ed~yar~egreIisnLakaaGl------a~mistmrpDidn~deYVRnt 495 (1172)
T KOG0213|consen 430 KLD--DLVRPYVHKILVVIEPLLID------EDYYARVEGREIISNLAKAAGL------ATMISTMRPDIDNKDEYVRNT 495 (1172)
T ss_pred hhc--ccchhceeeeEEEeecceec------chHHHhhchHHHHHHHHHHhhh------HHHHHhhcCCcccccHHHHHH
Confidence 333 23444555544 43332 2577888889999999888775 446777788899989999999
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCCh
Q 000934 190 SVSCIASLASSLSDDLLAKATIEVVRNLRSK-GAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDE 268 (1219)
Q Consensus 190 a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~-~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~ 268 (1219)
...+++.++..++-..+ +|.+-....+. +| +.|.+.|.+...||.-.|-...||+..++..+-+.+. |+..
T Consensus 496 tarafavvasalgip~l---lpfLkavc~SkkSw--qaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~---De~q 567 (1172)
T KOG0213|consen 496 TARAFAVVASALGIPAL---LPFLKAVCGSKKSW--QARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLK---DEQQ 567 (1172)
T ss_pred HHHHHHHHHHHhCcHHH---HHHHHHHhccccch--hhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhc---ccch
Confidence 99999999998876644 44444444443 34 7899999999999999998899999999999988887 5677
Q ss_pred HHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHH-HHH
Q 000934 269 ELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWK-VRR 347 (1219)
Q Consensus 269 elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swk-VR~ 347 (1219)
-+|-.+..++..+++... ||--+.+..+++-+ || +|+
T Consensus 568 kVR~itAlalsalaeaa~----Pygie~fDsVlkpL--------------------------------------wkgir~ 605 (1172)
T KOG0213|consen 568 KVRTITALALSALAEAAT----PYGIEQFDSVLKPL--------------------------------------WKGIRQ 605 (1172)
T ss_pred hhhhHHHHHHHHHHHhcC----CcchHHHHHHHHHH--------------------------------------HHHHHH
Confidence 788888888887776543 33333333333322 21 333
Q ss_pred HHH-------HHHHHHHhcCchhhHHHHH-HHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCC--------
Q 000934 348 AAA-------KCLAALIVSRPEMLSKLYE-EACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDN-------- 411 (1219)
Q Consensus 348 ~Aa-------~~l~~li~~~~~~l~~~~~-~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~-------- 411 (1219)
.-- ++++.++--.-.....+|. .++-.++.-|..++|+.+.-++..+...+...|....|.+..
T Consensus 606 hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~ 685 (1172)
T KOG0213|consen 606 HRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFS 685 (1172)
T ss_pred ccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhh
Confidence 322 3333333222122233333 455566667888888888777777766665444322222210
Q ss_pred -----CCCC--h-------hHHHHHHH--HHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcch-hhhh-hhhhhhHhH
Q 000934 412 -----NELN--P-------RWLLKQEV--SKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPD-CLAD-HIGSLIPGI 473 (1219)
Q Consensus 412 -----~~~~--~-------~~~L~~~~--p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~-~l~~-~~~~l~~~l 473 (1219)
.+.. . ...+...+ ..++..+..-+++..+..| .....+...++..+|. .+.. .-+.++..|
T Consensus 686 fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yr-km~~etv~ri~~~lg~~diderleE~lidgi 764 (1172)
T KOG0213|consen 686 FWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYR-KMVAETVSRIVGRLGAADIDERLEERLIDGI 764 (1172)
T ss_pred hhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHH-HHHHHHHHHHHhccccccccHHHHHHHHHHH
Confidence 0000 0 00112222 3444555555666666666 6666677776665543 2333 566788889
Q ss_pred HHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCC
Q 000934 474 EKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFD 553 (1219)
Q Consensus 474 ~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~ 553 (1219)
+.++++..+...+. +..++.+....+ ...+||+++|+..++..++++.++++..|.+.++.+...+.... .
T Consensus 765 l~Afqeqtt~d~vm---l~gfg~V~~~lg-~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~---e-- 835 (1172)
T KOG0213|consen 765 LYAFQEQTTEDSVM---LLGFGTVVNALG-GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCG---E-- 835 (1172)
T ss_pred HHHHHhcccchhhh---hhhHHHHHHHHh-hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhcc---H--
Confidence 99998765322333 344455544433 35689999999999999999999999999999999988764431 0
Q ss_pred CcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcc-cccchhhhHHHHHHHhhcCC--chHHHHHHHHHHHh-
Q 000934 554 FKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD-NLGAELPACLPVLVDRMGNE--ITRLTAVKAFAVIA- 629 (1219)
Q Consensus 554 ~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~-~l~~~~~~~l~~L~~~L~~e--~~r~~a~~al~~i~- 629 (1219)
...+..+=..+.+-|+ ..++||--.-+.++..++...|- .+.|-...++|.|...|+|. -+..+.+..++.|+
T Consensus 836 -e~~m~~lGvvLyEylg--eeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iad 912 (1172)
T KOG0213|consen 836 -EKLMGHLGVVLYEYLG--EEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIAD 912 (1172)
T ss_pred -HHHHHHhhHHHHHhcC--cccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHh
Confidence 1122222233344443 44688887778888877777754 45555566666666666654 35678899999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHHHH
Q 000934 630 ASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELC 709 (1219)
Q Consensus 630 ~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l 709 (1219)
.++..+.-.+|...+.. |...|...+...|.++..+++-|++..|. ++++..|...+...+.|.+-..--++
T Consensus 913 rgpE~v~aREWMRIcfe-LlelLkahkK~iRRaa~nTfG~IakaIGP-------qdVLatLlnnLkvqeRq~RvcTtvaI 984 (1172)
T KOG0213|consen 913 RGPEYVSAREWMRICFE-LLELLKAHKKEIRRAAVNTFGYIAKAIGP-------QDVLATLLNNLKVQERQNRVCTTVAI 984 (1172)
T ss_pred cCcccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHhcCH-------HHHHHHHHhcchHHHHHhchhhhhhh
Confidence 44444455788877764 66788888899999999999999998875 56777788888777777665444444
Q ss_pred HHHhhcccCCCchhHhHhhhhHHHHHHHhhhcc--cchhhHHHHHHHHHHHHhhcCCChHHHHHHHhccCCCCCCCcchh
Q 000934 710 CTLMADKRSSPNVGLAVRNKVLPQALALIKSSL--LQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVA 787 (1219)
Q Consensus 710 ~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~--l~~~~l~al~~~~~~l~~~~~~~~~~l~~~Ll~~~~~~~~~~~l~ 787 (1219)
+-+.+. +.|- .++|.+++--+.|- +|...|.++..+|+-+++....+...+.+-|-+.+.. .+..+
T Consensus 985 aIVaE~--c~pF-------tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmD---rD~vh 1052 (1172)
T KOG0213|consen 985 AIVAET--CGPF-------TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMD---RDLVH 1052 (1172)
T ss_pred hhhhhh--cCch-------hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhcc---ccHHH
Confidence 444443 2221 57888887766663 6888999999999999887644444443333333321 22345
Q ss_pred hhhhhhhhhHhhhhhhccCc-cchhhHHHHHHHHhhcCCCCchHHHHHHHHHHHhhhccCCCCCccchHHHHHHhcCCCc
Q 000934 788 KQAMYSIAQCVAVLCLAAGD-QKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPF 866 (1219)
Q Consensus 788 ~~a~~~~a~~i~~i~~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~laL~~Lgeig~~~~~~~~~~l~~~ll~~l~~~~ 866 (1219)
++.-.++-+-++.-+.+.|. +.+.-+++-+++.+-. ..+-...-...++..+....+. .....-+++-|-+++
T Consensus 1053 Rqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle---~sPhviqa~~e~~eg~r~~Lg~---~~~~~Y~~QGLFHPa 1126 (1172)
T KOG0213|consen 1053 RQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILE---TSPHVIQAFDEAMEGLRVALGP---QAMLKYCLQGLFHPA 1126 (1172)
T ss_pred HHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcC---CChHHHHHHHHHHHHHHHHhch---HHHHHHHHHhccCcH
Confidence 66533333332222222222 1222333434444332 1121111111222222211211 123445555566677
Q ss_pred hhHhHHHHHHHHhhhhc
Q 000934 867 EEIKSAASYALGNIAVG 883 (1219)
Q Consensus 867 e~vR~aAa~aLG~l~~~ 883 (1219)
..||..-+..+..+..+
T Consensus 1127 rkVR~~yw~vyn~my~~ 1143 (1172)
T KOG0213|consen 1127 RKVRKRYWTVYNSMYHG 1143 (1172)
T ss_pred HHHHHHHHHHHHhHhhc
Confidence 77777766666555544
No 12
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.86 E-value=1e-16 Score=175.21 Aligned_cols=646 Identities=14% Similarity=0.137 Sum_probs=408.7
Q ss_pred CccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCC---hhhhHHHH-------H
Q 000934 57 DVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT---SSLAQSIH-------T 126 (1219)
Q Consensus 57 D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~---~~~~~~~~-------~ 126 (1219)
.|++.+|..|.+-|-.+.+.-.++.+.-++..||+. +++++.|-+++++||.-+..-.+ ...+..+. +
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~--ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~ 93 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDL--NSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKE 93 (858)
T ss_pred CCCCCccccHHHHHHHhccccHHHHHHHHHHHHhcc--CCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHH
Confidence 577778888888887776543333333344444432 45678899999999975532221 01111111 1
Q ss_pred hHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhh-hHhHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhCCHH
Q 000934 127 SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM-SNDHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDD 204 (1219)
Q Consensus 127 ~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l-~~~~~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~ 204 (1219)
.+-...+.++.+. .+..-..|-..++.+... .+ ...+|.++..+.....++.+ .++..++.++|..+....++
T Consensus 94 qvK~~al~aL~s~--epr~~~~Aaql~aaIA~~---Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe 168 (858)
T COG5215 94 QVKGMALRALKSP--EPRFCTMAAQLLAAIARM---ELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPE 168 (858)
T ss_pred HHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHh---hCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHH
Confidence 1222233444443 344444454555554321 12 24589999999999998887 78899999999998877664
Q ss_pred -H---HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhcc--chhhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 000934 205 -L---LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGP--HLGDTVPVLIDYCTSASENDEELREYSLQAL 278 (1219)
Q Consensus 205 -~---~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~--~l~~iip~ll~~~~~~~~~d~elre~al~~l 278 (1219)
+ .+.++-.++.+-.+...+..+|-.++.++..-+.-....|.. --+-+|....+..+ .+|.|+...++.+|
T Consensus 169 ~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq---~~d~e~q~aafgCl 245 (858)
T COG5215 169 DLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQ---GNDEELQHAAFGCL 245 (858)
T ss_pred HHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhcc---CCcHHHHHHHHHHH
Confidence 2 345555666665555444566666665555422212111111 11223444444444 47899999999999
Q ss_pred HHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHh
Q 000934 279 ESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIV 358 (1219)
Q Consensus 279 ~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~ 358 (1219)
..++.-+-+.|.+|++..+-.++...-|.||- +|.-.|.+-++++.+
T Consensus 246 ~kim~LyY~fm~~ymE~aL~alt~~~mks~nd---------------------------------~va~qavEfWstice 292 (858)
T COG5215 246 NKIMMLYYKFMQSYMENALAALTGRFMKSQND---------------------------------EVAIQAVEFWSTICE 292 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch---------------------------------HHHHHHHHHHHHHHH
Confidence 99998888899999998776655444356651 111111111111111
Q ss_pred ----------cCch------hh-HHHHHHHHHHHHhhh-------cccchhHHHHHHHHHHHHHHHhcccCccccCCCCC
Q 000934 359 ----------SRPE------ML-SKLYEEACPKLIDRF-------KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNEL 414 (1219)
Q Consensus 359 ----------~~~~------~l-~~~~~~i~p~Li~~~-------~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~ 414 (1219)
..|+ -+ ..-...++|.|++.+ .+.+|++-.++-.|+.-.....|.
T Consensus 293 Eeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd----------- 361 (858)
T COG5215 293 EEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD----------- 361 (858)
T ss_pred HHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-----------
Confidence 0110 00 001223455555443 235688887777666555443321
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhc-chhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHH
Q 000934 415 NPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVL-PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTF 493 (1219)
Q Consensus 415 ~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~-~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~ 493 (1219)
..+.+++..+.+.++.++|.-| .++...|+++.+.- ...+.+++++.+|.|...+.|+. --++..+..+
T Consensus 362 -------~i~~pVl~FvEqni~~~~w~nr-eaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~--l~vk~ttAwc 431 (858)
T COG5215 362 -------KIMRPVLGFVEQNIRSESWANR-EAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC--LWVKSTTAWC 431 (858)
T ss_pred -------HhHHHHHHHHHHhccCchhhhH-HHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce--eehhhHHHHH
Confidence 1234466777788888999999 88999999988642 23577899999999999998764 4567777777
Q ss_pred HHHHhccCCCCCchh--hhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhh
Q 000934 494 TRLVLSSHSPPVFHP--YIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN 571 (1219)
Q Consensus 494 l~~l~~~~~~~~~~~--~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~ 571 (1219)
++.+..+ -+..+.| |+...+...+.++.|. +++....-+....++.++.+.......-+.++...++..++..-..
T Consensus 432 ~g~iad~-va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~ 509 (858)
T COG5215 432 FGAIADH-VAMIISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTEL 509 (858)
T ss_pred HHHHHHH-HHHhcCccccccHHHHHHHhhhhcc-chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHh
Confidence 8888654 3456666 7777788777777764 5666666677777777665432111334556666666666655444
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcC-----------------CchHHHHHHHHHHHhcCCCC
Q 000934 572 QDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGN-----------------EITRLTAVKAFAVIAASPLH 634 (1219)
Q Consensus 572 ~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~-----------------e~~r~~a~~al~~i~~s~~~ 634 (1219)
.+.+...|..+++++|.++....+.+.+.+..++...+.+|.. +....+-+.+|..|+... +
T Consensus 510 ~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~-~ 588 (858)
T COG5215 510 ALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTR-R 588 (858)
T ss_pred hccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 4556788999999999999988777766555555555544321 122334456666666332 3
Q ss_pred CchhHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHHHHHHHh
Q 000934 635 IDLTCVLEHVIAELTAFLRKAN-RALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLM 713 (1219)
Q Consensus 635 ~~~~~~l~~~l~~L~~~L~~~~-~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~ 713 (1219)
.++++.-..++..+...+.+.+ -....-.+.+++.+..+.+..+. .+++.+++-+..-++..|..+...+..++|.+.
T Consensus 589 ~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe-~y~~~fiPyl~~aln~~d~~v~~~avglvgdla 667 (858)
T COG5215 589 RDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFE-QYASKFIPYLTRALNCTDRFVLNSAVGLVGDLA 667 (858)
T ss_pred CCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 3556666667777777777653 33556667777777766554443 356778888888888889999999999999998
Q ss_pred hcccCCCchhHhHhhhhHHHHHHHhhhcccchhhHHHHHHHHHHHHhhcCCChHHHHHHH
Q 000934 714 ADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSL 773 (1219)
Q Consensus 714 ~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~~~l~~~~~~~~~~l~~~L 773 (1219)
.. ....+..|.+.++..+.+-+.|+..+...-.+++.+|+.++-+.+..|.++++.+
T Consensus 668 nt---l~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~i 724 (858)
T COG5215 668 NT---LGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMI 724 (858)
T ss_pred HH---hhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 75 3345667888999999998888876665557899999999888877888776655
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.84 E-value=1.8e-14 Score=186.51 Aligned_cols=623 Identities=15% Similarity=0.126 Sum_probs=394.6
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccC-ccchhhHHHHHHHHHHhhhcChhhH-
Q 000934 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD-VAGDVSGLAVKCLAPLVKKVSEPRV- 82 (1219)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D-~~~eVq~~A~k~l~~l~~~~~~~~~- 82 (1219)
.+..+++-+++.|++.++-|+.-|.+......-....-.....++.++++|.+ ++..||..|+.+|+.++..-.+...
T Consensus 190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~ 269 (2102)
T PLN03200 190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQA 269 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHH
Confidence 35566777788999999999887765554311011111234578899999974 5679999999999999864222110
Q ss_pred ---HHHHHHHHHHhcCCC---------cchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHH
Q 000934 83 ---VEMTDKLCIKLLNGK---------DQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECL 150 (1219)
Q Consensus 83 ---~~l~~~L~~~~~~~~---------~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al 150 (1219)
..-++.|+..+.++. ...++.+.-||..++.+. ..++|.|-+.+.+.. +..+..+++
T Consensus 270 Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~----------~~ll~~L~~ll~s~r-d~~~~ada~ 338 (2102)
T PLN03200 270 IADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM----------SALILYLGELSESPR-SPAPIADTL 338 (2102)
T ss_pred HHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc----------hhhHHHHHHhhcccc-hHHHHHHHH
Confidence 122445555554322 224677888888888654 345666655554432 345566677
Q ss_pred HHHHHHHHHhhhhhhHhH----HHHHHHHhhhhcCChHH-HHHHHHHHHHHHHhhC-CHHHH--HHHHHHHHHHhhcCCC
Q 000934 151 DILCDVLHKFGNLMSNDH----ERLLSALLPQLSANQAS-VRKKSVSCIASLASSL-SDDLL--AKATIEVVRNLRSKGA 222 (1219)
Q Consensus 151 ~~L~~l~~~~g~~l~~~~----~~l~~~ll~~l~~~~~~-vrk~a~~~l~~l~~~~-~~~~~--~~l~~~ll~~l~~~~~ 222 (1219)
.++..++..+...-.... ..+...+...+.++++. +++++..+|..+.... -...+ .+..+.++..+...+
T Consensus 339 gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~- 417 (2102)
T PLN03200 339 GALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMAT- 417 (2102)
T ss_pred hhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCC-
Confidence 777777655433211110 12346777888887664 5788888885543221 11111 234556677676654
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhccch-hhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccH-HHHHHHH
Q 000934 223 KPEMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLT 300 (1219)
Q Consensus 223 ~~~~~~~~i~~l~~l~~~~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l-~~ii~~~ 300 (1219)
.+.+..++.++..++........--. ...+|.+++.+.+ ++.++++.+..++..++......-.... ...++.+
T Consensus 418 -~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s---~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~L 493 (2102)
T PLN03200 418 -ADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL---SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPL 493 (2102)
T ss_pred -HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 37888899999999875433211111 2358899998884 5788999999999998765543222221 2356666
Q ss_pred HHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHH--HHHHHHHHhh
Q 000934 301 LEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY--EEACPKLIDR 378 (1219)
Q Consensus 301 l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~--~~i~p~Li~~ 378 (1219)
.++++. + +.++|+.|+-+|..+....+ ...... ..++|.|++.
T Consensus 494 V~LL~s-~---------------------------------~~~iqeeAawAL~NLa~~~~-qir~iV~~aGAIppLV~L 538 (2102)
T PLN03200 494 VQLLET-G---------------------------------SQKAKEDSATVLWNLCCHSE-DIRACVESAGAVPALLWL 538 (2102)
T ss_pred HHHHcC-C---------------------------------CHHHHHHHHHHHHHHhCCcH-HHHHHHHHCCCHHHHHHH
Confidence 666642 1 12789999999999887433 233333 2578889888
Q ss_pred hcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhc
Q 000934 379 FKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVL 458 (1219)
Q Consensus 379 ~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~ 458 (1219)
++..+..++..+..++..++.... .+.++.+ ...|...+.+.+ ..++..++.+....
T Consensus 539 L~sgd~~~q~~Aa~AL~nLi~~~d------------------~~~I~~L----v~LLlsdd~~~~-~~aL~vLgnIlsl~ 595 (2102)
T PLN03200 539 LKNGGPKGQEIAAKTLTKLVRTAD------------------AATISQL----TALLLGDLPESK-VHVLDVLGHVLSVA 595 (2102)
T ss_pred HhCCCHHHHHHHHHHHHHHHhccc------------------hhHHHHH----HHHhcCCChhHH-HHHHHHHHHHHhhc
Confidence 888888999999999998876421 1223333 345666667777 77888888776543
Q ss_pred chh--hhh--hhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHH
Q 000934 459 PDC--LAD--HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALR 534 (1219)
Q Consensus 459 ~~~--l~~--~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~ 534 (1219)
.+. ... .-..-+|.+.+.++..+ ...+.+|..++..++.++....-.-.....+|+++..+.....+++.++..
T Consensus 596 ~~~d~~~~g~~~~ggL~~Lv~LL~sgs--~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~ 673 (2102)
T PLN03200 596 SLEDLVREGSAANDALRTLIQLLSSSK--EETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSAR 673 (2102)
T ss_pred chhHHHHHhhhccccHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHH
Confidence 221 111 01245677777777543 578899999999998765422112245678899999999888899999999
Q ss_pred HHHHHHHhccCCccCCCCCCcccHH-HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhc
Q 000934 535 VCGELVRVLRPSVEGLGFDFKPYVQ-PIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMG 613 (1219)
Q Consensus 535 ~l~~l~~~l~~~~~~~~~~~~~~l~-~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~ 613 (1219)
++.++....++. ....++. ..++.+++.++ +.+.++++.|+.+++.++......-.-.-...++.|++.++
T Consensus 674 AL~nL~~~~~~~------q~~~~v~~GaV~pL~~LL~--~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr 745 (2102)
T PLN03200 674 ALAALSRSIKEN------RKVSYAAEDAIKPLIKLAK--SSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR 745 (2102)
T ss_pred HHHHHHhCCCHH------HHHHHHHcCCHHHHHHHHh--CCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH
Confidence 999998643221 1111122 24555666665 34678999999999999876522110011344677777775
Q ss_pred C--CchHHHHHHHHHHHhcCCCCCc-hhHHH--HHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHhC-CCCCc-----
Q 000934 614 N--EITRLTAVKAFAVIAASPLHID-LTCVL--EHVIAELTAFLRKANRALRQA--TLGTMNSLVVAYG-DKIGA----- 680 (1219)
Q Consensus 614 ~--e~~r~~a~~al~~i~~s~~~~~-~~~~l--~~~l~~L~~~L~~~~~~lr~~--al~~L~~l~~~~~-~~l~~----- 680 (1219)
. ...|..|.++|..++......+ +..++ ...+..|..+|+..|-..-.. +++.|..+++... ...++
T Consensus 746 ~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~ 825 (2102)
T PLN03200 746 EGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAV 825 (2102)
T ss_pred hCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhh
Confidence 4 3469999999999995432223 33333 346677888898777655554 8899999888532 22221
Q ss_pred -----chHHHHHHHHhhhcCCCChhhhHHHHHHHHHHhhc
Q 000934 681 -----SAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 715 (1219)
Q Consensus 681 -----~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~~~ 715 (1219)
..+++++.. +.+..+.+.+-++++|.++++.
T Consensus 826 ~~e~p~~l~~l~~~----l~~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 826 LAEVPSSLEPLVRC----LAEGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred HHhccCchHHHHHH----HHcCChHHHHHHHHHHHHHhcc
Confidence 123333333 3567788888999999999995
No 14
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.83 E-value=2.9e-15 Score=168.26 Aligned_cols=554 Identities=16% Similarity=0.212 Sum_probs=361.4
Q ss_pred hhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhh
Q 000934 100 HRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQL 179 (1219)
Q Consensus 100 ~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l 179 (1219)
+|...+.|...++..++ +..++|-|-..+++.+ ++..|+.++.+..+++.-.|-...+|...+++++-..+
T Consensus 492 VRnttarafavvasalg--------ip~llpfLkavc~Skk-SwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl 562 (1172)
T KOG0213|consen 492 VRNTTARAFAVVASALG--------IPALLPFLKAVCGSKK-SWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGL 562 (1172)
T ss_pred HHHHHHHHHHHHHHHhC--------cHHHHHHHHHHhcccc-chhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhh
Confidence 45555555554444333 2334444433334433 79999999999999999999988899999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccc-hhhhHHH
Q 000934 180 SANQASVRKKSVSCIASLASSLS---DDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPH-LGDTVPV 255 (1219)
Q Consensus 180 ~~~~~~vrk~a~~~l~~l~~~~~---~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~-l~~iip~ 255 (1219)
.|++..||--+..+++.++.... -+.|+.++..+.++++.... ..-...+.++|.++--.......| -..+|-.
T Consensus 563 ~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrg--k~laafLkAigyliplmd~eya~yyTrevmli 640 (1172)
T KOG0213|consen 563 KDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRG--KELAAFLKAIGYLIPLMDAEYASYYTREVMLI 640 (1172)
T ss_pred cccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccC--hHHHHHHHHHhhccccccHHHHHHhHHHHHHH
Confidence 99999999999999998887654 44699999999999877554 233345666666654433333443 4567777
Q ss_pred HHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhc-c----c-CCCCCCCCCCCcc---ccccccc
Q 000934 256 LIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYL-S----Y-DPNFTDNMEEDSD---DEAYEEE 326 (1219)
Q Consensus 256 ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l-~----~-dpn~~~~~d~d~~---~~~~~~~ 326 (1219)
++.-.+ ..|+|++...+..++..+...+-+-.-.-.++++..+... . . -+||..--|--.+ -+..++-
T Consensus 641 l~rEf~---sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~ 717 (1172)
T KOG0213|consen 641 LIREFG---SPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPI 717 (1172)
T ss_pred HHHhhC---CChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHH
Confidence 777666 4789999999999888776544222112234444443322 1 1 1233210000000 0000000
Q ss_pred chhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCch--hhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhccc
Q 000934 327 EEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPE--MLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNV 404 (1219)
Q Consensus 327 ~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~--~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~ 404 (1219)
-+-. -++|- |.+-.-|+..+.+...++...|. .=+.+-+.++..++-.|++..-.+. -++.+|+++++..+.
T Consensus 718 v~R~-v~~lk---de~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~- 791 (1172)
T KOG0213|consen 718 VSRV-VLDLK---DEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGG- 791 (1172)
T ss_pred HHHH-hhhhc---cccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhh-
Confidence 0000 01111 11235699999999999888761 1122233334444455654322221 346677888776651
Q ss_pred CccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchh----hhhhhhhhhHhHHHhhcCC
Q 000934 405 TKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDC----LADHIGSLIPGIEKSLNDK 480 (1219)
Q Consensus 405 ~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~----l~~~~~~l~~~l~~~l~d~ 480 (1219)
....++|+|+..+...|+.+++++| +.+..+.+.++.+...+ +-.|+.. .+.+.|.+.
T Consensus 792 --------------r~kpylpqi~stiL~rLnnksa~vR-qqaadlis~la~Vlktc~ee~~m~~lGv---vLyEylgee 853 (1172)
T KOG0213|consen 792 --------------RVKPYLPQICSTILWRLNNKSAKVR-QQAADLISSLAKVLKTCGEEKLMGHLGV---VLYEYLGEE 853 (1172)
T ss_pred --------------ccccchHHHHHHHHHHhcCCChhHH-HHHHHHHHHHHHHHHhccHHHHHHHhhH---HHHHhcCcc
Confidence 3467899999999999999999999 88888999888764332 2223332 334445443
Q ss_pred CCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHH
Q 000934 481 SSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQP 560 (1219)
Q Consensus 481 ~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~ 560 (1219)
. +.+--..+.++.++...++-....|-+..|+|.+..-+++++.+|....+..++.++.. +|. --....|+.
T Consensus 854 y--pEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr-gpE----~v~aREWMR- 925 (1172)
T KOG0213|consen 854 Y--PEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR-GPE----YVSAREWMR- 925 (1172)
T ss_pred c--HHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc-Ccc----cCCHHHHHH-
Confidence 2 45555667777888887777777788899999999999999999999999999999865 221 011224444
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCCc--hHHHHHHHHHHHhcCCCCCchh
Q 000934 561 IYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEI--TRLTAVKAFAVIAASPLHIDLT 638 (1219)
Q Consensus 561 l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~--~r~~a~~al~~i~~s~~~~~~~ 638 (1219)
+.-.+++.|++. ..++|.+|...+|-+....|. +.++..|+..|+.+. .|..+.-+++.++... .
T Consensus 926 IcfeLlelLkah--kK~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c-----~ 992 (1172)
T KOG0213|consen 926 ICFELLELLKAH--KKEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETC-----G 992 (1172)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhc-----C
Confidence 333456666654 578999999999999888775 567888888776443 4555555555555332 1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHHHHHHHhhc
Q 000934 639 CVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 715 (1219)
Q Consensus 639 ~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~~~ 715 (1219)
|| .++|.|..--+.++-.+....|.+++.+++..|. .+.+++-.+.+-+-..+.+.|+.-++.+..++..++-.
T Consensus 993 pF--tVLPalmneYrtPe~nVQnGVLkalsf~Feyige-mskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 993 PF--TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGE-MSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred ch--hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHH-HhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 21 3555555555667778889999999999988765 44456667777777777888999899999999988764
No 15
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.4e-17 Score=187.93 Aligned_cols=466 Identities=18% Similarity=0.220 Sum_probs=341.5
Q ss_pred CCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcC
Q 000934 37 FKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVT 116 (1219)
Q Consensus 37 ~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~ 116 (1219)
...++.....++..++..++.|++.||....+|+.+++..........+...+...+..++...|..++.++..++.+.+
T Consensus 87 ~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~ 166 (569)
T KOG1242|consen 87 LQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG 166 (569)
T ss_pred ccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH
Confidence 44456677889999999999999999999999999999877777777777777777776666778899999998887655
Q ss_pred ChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHH
Q 000934 117 TSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIAS 196 (1219)
Q Consensus 117 ~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~ 196 (1219)
..... =..++-.+..++++.+ ....|+.+.-++.....+.|....||...+++.++..+.|....||.+|..+.-.
T Consensus 167 i~~~~---~~~~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~ka 242 (569)
T KOG1242|consen 167 IESLK---EFGFLDNLSKAIIDKK-SALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKA 242 (569)
T ss_pred Hhhhh---hhhHHHHHHHHhcccc-hhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHH
Confidence 31111 1235556667777765 4455667888888888999999999999999999999999999999999999999
Q ss_pred HHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHH
Q 000934 197 LASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQ 276 (1219)
Q Consensus 197 l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~ 276 (1219)
+...++..-...++|.++..+....| ..+..+++.+|.++.++|..+.-++++++|-+.+.+. |...++|+++.+
T Consensus 243 i~~~~~~~aVK~llpsll~~l~~~kW--rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~---DT~~evr~a~~~ 317 (569)
T KOG1242|consen 243 IMRCLSAYAVKLLLPSLLGSLLEAKW--RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW---DTKPEVRKAGIE 317 (569)
T ss_pred HHHhcCcchhhHhhhhhHHHHHHHhh--hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc---cCCHHHHHHHHH
Confidence 99999888888999999999988888 5778999999999999999999999999999999998 689999999999
Q ss_pred HHHHHHHhCc-hhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHH
Q 000934 277 ALESFLLRCP-RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAA 355 (1219)
Q Consensus 277 ~l~~l~~~~~-~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~ 355 (1219)
++-.+....- .++.+|+|.++..+ .||+.. .-+|+..
T Consensus 318 ~l~~~~svidN~dI~~~ip~Lld~l-----~dp~~~-------------------------------------~~e~~~~ 355 (569)
T KOG1242|consen 318 TLLKFGSVIDNPDIQKIIPTLLDAL-----ADPSCY-------------------------------------TPECLDS 355 (569)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh-----cCcccc-------------------------------------hHHHHHh
Confidence 9988866432 25666666665544 255410 1123444
Q ss_pred HHhcCc-hhh-HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHH
Q 000934 356 LIVSRP-EML-SKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINR 433 (1219)
Q Consensus 356 li~~~~-~~l-~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~ 433 (1219)
+..+.. +.+ .+-+..+.|.|...+++|+-..+...+..++.+.+-.. .| ..+..++|.|++.+..
T Consensus 356 L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lve------------Dp-~~lapfl~~Llp~lk~ 422 (569)
T KOG1242|consen 356 LGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVE------------DP-KDLAPFLPSLLPGLKE 422 (569)
T ss_pred hcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhc------------CH-HHHhhhHHHHhhHHHH
Confidence 443321 222 23566778888888999998887766666666655432 12 3788999999999999
Q ss_pred HhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhh
Q 000934 434 QLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKAL 513 (1219)
Q Consensus 434 ~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i 513 (1219)
.+.+..+.+| ..+...|+.+.+..+ ...++...|.+...+.+... ...+..+...+..++.+.+- +++..+
T Consensus 423 ~~~d~~PEvR-~vaarAL~~l~e~~g---~~~f~d~~p~l~e~~~~~k~-~~~~~g~aq~l~evl~~~~v----~~~~~~ 493 (569)
T KOG1242|consen 423 NLDDAVPEVR-AVAARALGALLERLG---EVSFDDLIPELSETLTSEKS-LVDRSGAAQDLSEVLAGLGV----EKVEDI 493 (569)
T ss_pred HhcCCChhHH-HHHHHHHHHHHHHHH---hhcccccccHHHHhhccchh-hhhhHHHhhhHHHHHhcccc----hHHHHH
Confidence 9999988999 888889988887643 23557788888887765432 34567777777777766543 345566
Q ss_pred HHHHHHHhcCC--chHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHH
Q 000934 514 SSPVLAAVGER--YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAIS 584 (1219)
Q Consensus 514 ~p~l~~~l~d~--~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~ 584 (1219)
+|.+.+..... +++++..-+.. -.+.-..+ +..+.+|+.++++.+++++.+. |..++..++.
T Consensus 494 ~~~~~a~~~~~~~~~~~~dg~~~~-~~~lp~~~------~~~~~~yi~~i~~~~~k~~ad~--de~~~~~~~~ 557 (569)
T KOG1242|consen 494 LPEILANASSVLIDERIRDGVIWL-FYLLPYIF------GFQFQPYIHEILDEFLKGLADN--DEKGRDTALE 557 (569)
T ss_pred HHHHHHHHhhccchhhhccCeeeh-hhccchhh------hHHhHHHHHHHHHHHHHHhhhc--CCccccchhh
Confidence 66666554321 22222211211 11111111 4578899999999999988744 3444544443
No 16
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.82 E-value=1.1e-13 Score=179.12 Aligned_cols=783 Identities=14% Similarity=0.113 Sum_probs=458.9
Q ss_pred HHHHHHHHHhcCC--CcchhhhhHHHHHHHhccccCCCChHHH---HHHHHHHHHhccCccchhhHHHHHHHHHHhhhcC
Q 000934 4 LQMAAILEKITGK--DKDFRYMATSDLLNELNKESFKADADLE---VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS 78 (1219)
Q Consensus 4 ~~l~~ll~~~~~~--d~d~R~mAl~dL~~~l~~~~~~~~~~~~---~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~ 78 (1219)
..+..+++++.+. +++.|..|+-.|.......... .... ...++.|+..|...+.++|..|+.++..+..+
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~en--R~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~-- 88 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEA--RKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKE-- 88 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHH--HHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--
Confidence 4677889999866 7888999988887776553211 1111 33688899999999999999999999988754
Q ss_pred hhhH-----HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHH--HHHhHhHHHHHhhhccCC-ChhHHHHHH
Q 000934 79 EPRV-----VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQS--IHTSLTPQLTKGITLKDM-NTEIRCECL 150 (1219)
Q Consensus 79 ~~~~-----~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~--~~~~l~p~L~~~l~~~~~-~~~v~~~al 150 (1219)
++.- ...++-|+..+.+++.+.|..|+.+|..+...-........ +..-.+|.|+..+++.+. +..++..++
T Consensus 89 e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av 168 (2102)
T PLN03200 89 EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLT 168 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHH
Confidence 2211 23455566666677778899999999887653210011111 124567888888776421 223555667
Q ss_pred HHHHHHHHHhhhhhhH-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH---HH-HHHHHHHHHHhhcCCCChH
Q 000934 151 DILCDVLHKFGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAKPE 225 (1219)
Q Consensus 151 ~~L~~l~~~~g~~l~~-~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~ll~~l~~~~~~~~ 225 (1219)
-+|..+..+.+..-.. .....++.+...++++++.++..|+.++..++...++. .. ...+|.+++.+++.+. ..
T Consensus 169 ~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~-~~ 247 (2102)
T PLN03200 169 GALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE-VS 247 (2102)
T ss_pred HHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCC-hH
Confidence 7888877655432111 12235677778888888999999999998888765543 12 3468888888876432 36
Q ss_pred HHHHHHHHHHHHHHHhhhhhccch--hhhHHHHHHhhhccC------CCChHHHHHHHHHHHHHHHhCchhhcccHHHHH
Q 000934 226 MIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSAS------ENDEELREYSLQALESFLLRCPRDISSYCDEIL 297 (1219)
Q Consensus 226 ~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~~------~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii 297 (1219)
.|+.+..+++.|+...+. +...+ ...+|.+++.+.... +....+++.|.+++.+++.-.+ .++
T Consensus 248 VRE~AA~AL~nLAs~s~e-~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~--------~ll 318 (2102)
T PLN03200 248 VRAEAAGALEALSSQSKE-AKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMS--------ALI 318 (2102)
T ss_pred HHHHHHHHHHHHhcCCHH-HHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCch--------hhH
Confidence 899999999999985432 22222 234777777775321 1234579999999999987653 223
Q ss_pred HHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcC--chhhHHHH--HHHHH
Q 000934 298 HLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR--PEMLSKLY--EEACP 373 (1219)
Q Consensus 298 ~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~--~~~l~~~~--~~i~p 373 (1219)
+.+-+.+.. +. |. .+--.++-++..++... ++.....+ ..+.+
T Consensus 319 ~~L~~ll~s-~r------------------------------d~--~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~ 365 (2102)
T PLN03200 319 LYLGELSES-PR------------------------------SP--APIADTLGALAYALMVFDSSAESTRAFDPTVIEQ 365 (2102)
T ss_pred HHHHHhhcc-cc------------------------------hH--HHHHHHHhhHHHHHHhcCCchhhhhhccccccHH
Confidence 333222210 00 00 00011112222222111 11000011 12446
Q ss_pred HHHhhhcccchh-HHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHH
Q 000934 374 KLIDRFKEREEN-VKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLR 452 (1219)
Q Consensus 374 ~Li~~~~d~~~~-Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~ 452 (1219)
.|++.++.+++. +...+..++..++.... -...+.+ ...++.+...+...+..++ ..+...|.
T Consensus 366 ~LV~Llr~k~p~~vqe~V~eALasl~gN~~-------------l~~~L~~--~daik~LV~LL~~~~~evQ-~~Av~aL~ 429 (2102)
T PLN03200 366 ILVKLLKPRDTKLVQERIIEALASLYGNAY-------------LSRKLNH--AEAKKVLVGLITMATADVQ-EELIRALS 429 (2102)
T ss_pred HHHHHhCCCCCchhHHHHHHHHHHhcCChH-------------HHHHHHh--ccchhhhhhhhccCCHHHH-HHHHHHHH
Confidence 666666666544 35455556555432210 0001111 2345566677776666677 77777888
Q ss_pred HHHHhcchhhhhh-hhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchh-hhhhhHHHHHHHhcCCchHHHH
Q 000934 453 ELVVVLPDCLADH-IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHP-YIKALSSPVLAAVGERYYKVTA 530 (1219)
Q Consensus 453 ~L~~~~~~~l~~~-~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~-~l~~i~p~l~~~l~d~~~~v~~ 530 (1219)
.++....+....- -...+|.+.+.|...+ ...+..++..++.+..+... .-.. --...+|.++..+..++.+++.
T Consensus 430 ~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s--~~iQ~~A~~~L~nLa~~nde-nr~aIieaGaIP~LV~LL~s~~~~iqe 506 (2102)
T PLN03200 430 SLCCGKGGLWEALGGREGVQLLISLLGLSS--EQQQEYAVALLAILTDEVDE-SKWAITAAGGIPPLVQLLETGSQKAKE 506 (2102)
T ss_pred HHhCCCHHHHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 8775422221111 1124677778887543 56788888899988765321 1111 1235788899999888899999
Q ss_pred HHHHHHHHHHHhccCCccCCCCCCcccHH--HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHH
Q 000934 531 EALRVCGELVRVLRPSVEGLGFDFKPYVQ--PIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVL 608 (1219)
Q Consensus 531 ~al~~l~~l~~~l~~~~~~~~~~~~~~l~--~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L 608 (1219)
+|.++++++... + .+....+. ..++.+++.|.+. +.++++.|..++..++...... .+ +.+
T Consensus 507 eAawAL~NLa~~--~------~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~nLi~~~d~~---~I----~~L 569 (2102)
T PLN03200 507 DSATVLWNLCCH--S------EDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLTKLVRTADAA---TI----SQL 569 (2102)
T ss_pred HHHHHHHHHhCC--c------HHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhccchh---HH----HHH
Confidence 999999999752 1 11222221 3455566666643 6789999999999987653221 22 334
Q ss_pred HHhhcC--CchHHHHHHHHHHHhcCCCCCch-hHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchH
Q 000934 609 VDRMGN--EITRLTAVKAFAVIAASPLHIDL-TCV--LEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAY 683 (1219)
Q Consensus 609 ~~~L~~--e~~r~~a~~al~~i~~s~~~~~~-~~~--l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~ 683 (1219)
+..+.. ...+..++++++.+.......++ ... -...++.|..+++..+...|..|..+|..++.........-..
T Consensus 570 v~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~ 649 (2102)
T PLN03200 570 TALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLAT 649 (2102)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 444433 34566788888888642212111 111 2357889999999999999999999999998654331111112
Q ss_pred HHHHHHHhhhcCCCChhhhHHHHHHHHHHhhcccCCCch-hHhHhhhhHHHHHHHhhhcc--cchhhHHHHHHHHHHH--
Q 000934 684 EVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNV-GLAVRNKVLPQALALIKSSL--LQGQALVALQSFFAAL-- 758 (1219)
Q Consensus 684 ~~il~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~-~~~~~~~~l~~l~~ll~s~~--l~~~~l~al~~~~~~l-- 758 (1219)
...++-+..+++..+..+...+..+|+.+... ..++. ...+....+|.+++++++.. +...++.++..++..-
T Consensus 650 agaIpPLV~LLss~~~~v~keAA~AL~nL~~~--~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~ 727 (2102)
T PLN03200 650 DEIINPCIKLLTNNTEAVATQSARALAALSRS--IKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV 727 (2102)
T ss_pred cCCHHHHHHHHhcCChHHHHHHHHHHHHHHhC--CCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH
Confidence 34555666777777777778888888888863 22221 22345668999999997663 2334445555544211
Q ss_pred -Hhhc-CCChHHHHHHHhccCCCCCCCcchhhhhhhhhhhHhhhhhhccCc-c------chhhHHHHHHHHhhcCCCCch
Q 000934 759 -VYSA-NTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGD-Q------KCSSTVKMLTDILKDDSSTNS 829 (1219)
Q Consensus 759 -~~~~-~~~~~~l~~~Ll~~~~~~~~~~~l~~~a~~~~a~~i~~i~~~~~~-~------~~~~~l~~~~~~l~~~~~~~~ 829 (1219)
.+.. ...++.+++-| ..- .+. .++. ++.++..++...+. + ...+++..+++.++. .+.+.
T Consensus 728 ~~ei~~~~~I~~Lv~lL-r~G----~~~-~k~~----Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~-~~~~~ 796 (2102)
T PLN03200 728 AAEALAEDIILPLTRVL-REG----TLE-GKRN----AARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNS-TDLDS 796 (2102)
T ss_pred HHHHHhcCcHHHHHHHH-HhC----ChH-HHHH----HHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhc-CCcch
Confidence 0000 11233333322 211 111 1232 55666666654332 1 123566677777764 11122
Q ss_pred HHHHHHHHHHHhhhccC---CCC--------CccchHHHHHHhcCCCchhHhHHHHHHHHhhhh
Q 000934 830 AKQHLALLCLGEIGRRK---DLS--------SHEHIENVIIESFQSPFEEIKSAASYALGNIAV 882 (1219)
Q Consensus 830 ~~~~laL~~Lgeig~~~---~~~--------~~~~l~~~ll~~l~~~~e~vR~aAa~aLG~l~~ 882 (1219)
....-+|..|+.+.+.. ..+ ..|.-.+.+..++...++.+-..|...|.+++.
T Consensus 797 ~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 797 SATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 22333666666665531 111 113455667788888889999999988888874
No 17
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.81 E-value=2.3e-15 Score=166.03 Aligned_cols=723 Identities=15% Similarity=0.170 Sum_probs=409.6
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHH-HhccccCCCChHHHHHHHHHHH-HhccCccchhhHHHHHHHHHHhhhcChh--
Q 000934 5 QMAAILEKITGKDKDFRYMATSDLLN-ELNKESFKADADLEVKLSNIVV-QQLDDVAGDVSGLAVKCLAPLVKKVSEP-- 80 (1219)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~-~l~~~~~~~~~~~~~~v~~~ll-~~L~D~~~eVq~~A~k~l~~l~~~~~~~-- 80 (1219)
.+-.++-|.++..|..|.-++--|.. +.+.+ .....+++++.++ +.|+|+. |...+|.|-.+.-++..-
T Consensus 169 ~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg----~~~vfnkvLp~lm~r~LeDqe---rhl~vk~idr~Ly~lddl~~ 241 (975)
T COG5181 169 DVYRLLLKVKNGGKRMRMEGLRILTDKAVNFG----AAAVFNKVLPMLMSRELEDQE---RHLVVKLIDRLLYGLDDLKV 241 (975)
T ss_pred hHHHHHhhcccCCchhhHHHHHHHHHHhhccc----HHHHHHHHHHHHHhhhhhhhh---hHhHHHHHHHHHHhcccccc
Confidence 45667778888888888877766642 22211 1234455555555 3344443 344455555444322210
Q ss_pred -hH----------------------HHHHHHHHHHhc-------------CCCcchhhHHHHHHHHHHhhcCChhhhHHH
Q 000934 81 -RV----------------------VEMTDKLCIKLL-------------NGKDQHRDIASIALKTIIAEVTTSSLAQSI 124 (1219)
Q Consensus 81 -~~----------------------~~l~~~L~~~~~-------------~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~ 124 (1219)
++ .+++..|..... +.++-+|.+.+.|...++..++
T Consensus 242 pyvhkILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~alg-------- 313 (975)
T COG5181 242 PYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALG-------- 313 (975)
T ss_pred cceeeEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhC--------
Confidence 00 133333332221 1222356666666666665444
Q ss_pred HHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCH-
Q 000934 125 HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD- 203 (1219)
Q Consensus 125 ~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~- 203 (1219)
...+.|-|-....+.+ +++.|+.++.+..+++.-.|....+|...+++++-..+.|.+.-||--+..+++.++...++
T Consensus 314 v~~llpfl~a~c~Srk-Sw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Py 392 (975)
T COG5181 314 VEELLPFLEALCGSRK-SWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPY 392 (975)
T ss_pred cHHHHHHHHHHhcCcc-chhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCc
Confidence 2345555544444443 78999999999999999999988899999999999999999888999999999988876543
Q ss_pred --HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh-hhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 000934 204 --DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALES 280 (1219)
Q Consensus 204 --~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~-~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~ 280 (1219)
+.|+.++..+.++.+..... .-...+.+.|.+.--. |....-|-...+..++..+++ .|++.+...+
T Consensus 393 gie~fd~vl~pLw~g~~~hrgk--~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~s---pdeemkk~~l----- 462 (975)
T COG5181 393 GIEQFDEVLCPLWEGASQHRGK--ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKS---PDEEMKKDLL----- 462 (975)
T ss_pred chHHHHHHHHHHHHHHHhcCCc--hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCC---chhhcchhHH-----
Confidence 46899999998887765432 2223333443332211 122222334556666665552 3444332221
Q ss_pred HHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcC
Q 000934 281 FLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR 360 (1219)
Q Consensus 281 l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~ 360 (1219)
.+...|-+ -+.|..|+.|... .
T Consensus 463 --------------~v~~~C~~----------------------------------v~~~tp~~lr~~v----------~ 484 (975)
T COG5181 463 --------------VVERICDK----------------------------------VGTDTPWKLRDQV----------S 484 (975)
T ss_pred --------------HHHHHHhc----------------------------------cCCCCHHHHHHhh----------c
Confidence 11111100 0123456655431 1
Q ss_pred chhhHHHHHHHHHHHHhhh-cccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccC
Q 000934 361 PEMLSKLYEEACPKLIDRF-KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKS 439 (1219)
Q Consensus 361 ~~~l~~~~~~i~p~Li~~~-~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~ 439 (1219)
|+.+.++|.. |. .||--. ..+..+-..+.+..+ -|.++..+...++|+.
T Consensus 485 pefF~~fw~r-------r~A~dr~~~--k~v~~ttvilAk~~g---------------------~~~v~~kil~~~~De~ 534 (975)
T COG5181 485 PEFFSPFWRR-------RSAGDRRSY--KQVVLTTVILAKMGG---------------------DPRVSRKILEYYSDEP 534 (975)
T ss_pred HHhhchHHHh-------hhccccccc--ceeehhHHHHHHHcC---------------------ChHHHHHHHhhccCCc
Confidence 2222222211 00 111000 001111111222211 2556666777778877
Q ss_pred ccchhhHHHHHHHHHHHhcch-hhhh-hhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHH
Q 000934 440 IKTKQVGAFSVLRELVVVLPD-CLAD-HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPV 517 (1219)
Q Consensus 440 ~~~r~~~~~~~L~~L~~~~~~-~l~~-~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l 517 (1219)
.+.| .....+....+..+|. .+.+ ....+...++.++++..+...+- +.+++.++.+. .-.-+||+..|+..+
T Consensus 535 ep~r-~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~i---l~~f~tv~vsl-~~r~kp~l~~ivSti 609 (975)
T COG5181 535 EPYR-KMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLI---LPCFSTVLVSL-EFRGKPHLSMIVSTI 609 (975)
T ss_pred chhh-hhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEE---Eecccceeeeh-hhccCcchHHHHHHH
Confidence 6666 5555555555554433 2443 45556778888887664322222 22222222221 123468999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcc-c
Q 000934 518 LAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD-N 596 (1219)
Q Consensus 518 ~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~-~ 596 (1219)
+..++.+.+.++..|.+.++.+...+.... . ...+..+-..+.+-++ ..++||--.-+.|+..+....+- .
T Consensus 610 L~~L~~k~p~vR~~aadl~~sl~~vlk~c~-----e-~~~l~klg~iLyE~lg--e~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 610 LKLLRSKPPDVRIRAADLMGSLAKVLKACG-----E-TKELAKLGNILYENLG--EDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHHHHHhcc-----h-HHHHHHHhHHHHHhcC--cccHHHHHHHHHHHHHHhhhhcccc
Confidence 999999999999999999999988764421 1 1223444444455554 44688887777777777766543 4
Q ss_pred ccchhhhHHHHHHHhhcCCc--hHHHHHHHHHHHh-cCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000934 597 LGAELPACLPVLVDRMGNEI--TRLTAVKAFAVIA-ASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVA 673 (1219)
Q Consensus 597 l~~~~~~~l~~L~~~L~~e~--~r~~a~~al~~i~-~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~ 673 (1219)
++|-...++|.+...|+|.. +..+++..++.|+ .++..+...+|...+. .|...|.+-|...|.+|-++++-|.+.
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcf-eLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICF-ELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHH-HHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 55655666666666666543 4567799999999 5665555678887776 466788888999999999999999988
Q ss_pred hCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHHHHHHHhhcccCCCchhHhHhhhhHHHHHHHhhhc--ccchhhHHHH
Q 000934 674 YGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSS--LLQGQALVAL 751 (1219)
Q Consensus 674 ~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~--~l~~~~l~al 751 (1219)
.|. ++++..|...+...+.|.+-..--+++-+.+. +.|- .++|.++.--..| .+|...+.++
T Consensus 761 iGP-------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~--cgpf-------sVlP~lm~dY~TPe~nVQnGvLkam 824 (975)
T COG5181 761 IGP-------QDVLDILLNNLKVQERQQRVCTSVAISIVAEY--CGPF-------SVLPTLMSDYETPEANVQNGVLKAM 824 (975)
T ss_pred cCH-------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhh--cCch-------hhHHHHHhcccCchhHHHHhHHHHH
Confidence 775 66777788888777877665443344433333 1221 5677777665555 3688889999
Q ss_pred HHHHHHHHhhcCCChHHHHHHHhccCCCCCCCcchhhhhhhhhhhHhhhhhhccCc-cchhhHHHHHHHHhhcCCCCchH
Q 000934 752 QSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGD-QKCSSTVKMLTDILKDDSSTNSA 830 (1219)
Q Consensus 752 ~~~~~~l~~~~~~~~~~l~~~Ll~~~~~~~~~~~l~~~a~~~~a~~i~~i~~~~~~-~~~~~~l~~~~~~l~~~~~~~~~ 830 (1219)
..+|+-+++..-.+...+.+-|-+.+. + .+..+++.-.++-+-+..-+.+.|. +.+--.++-+++.+-. + .+-
T Consensus 825 ~fmFeyig~~s~dYvy~itPlleDAlt-D--rD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle-~--sPh 898 (975)
T COG5181 825 CFMFEYIGQASLDYVYSITPLLEDALT-D--RDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILE-P--SPH 898 (975)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhhc-c--cchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccC-C--CcH
Confidence 999999887763333333333322222 1 2224566544444444433444443 2233455555555442 1 121
Q ss_pred HHHHHHHHHHhhhccCCCCCccchHHHHHHhcCCCchhHhHHHHHHHHhh
Q 000934 831 KQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNI 880 (1219)
Q Consensus 831 ~~~laL~~Lgeig~~~~~~~~~~l~~~ll~~l~~~~e~vR~aAa~aLG~l 880 (1219)
...-...++..+....+. .-...-+.+-+-+|+..||++-+.....+
T Consensus 899 vi~~~~Eg~e~~~~~lg~---g~~m~Yv~qGLFHPs~~VRk~ywtvyn~m 945 (975)
T COG5181 899 VIQSFDEGMESFATVLGS---GAMMKYVQQGLFHPSSTVRKRYWTVYNIM 945 (975)
T ss_pred HHHHHHHHHHHHHHHhcc---HHHHHHHHHhccCchHHHHHHHHHHHhhh
Confidence 111112233333322221 11344445555566666766655555433
No 18
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.73 E-value=2.7e-13 Score=149.87 Aligned_cols=729 Identities=12% Similarity=0.126 Sum_probs=413.5
Q ss_pred hhcCChHHHHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHH
Q 000934 178 QLSANQASVRKKSVSCIASLASSLSDD-LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVL 256 (1219)
Q Consensus 178 ~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~l 256 (1219)
..++.....|+.++..|.-=+...+.. .|++++|.++..--+ ++-|...+.++-.+....+.--.||..+|+-.+
T Consensus 176 kvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~Le----Dqerhl~vk~idr~Ly~lddl~~pyvhkILvVv 251 (975)
T COG5181 176 KVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELE----DQERHLVVKLIDRLLYGLDDLKVPYVHKILVVV 251 (975)
T ss_pred hcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh----hhhhHhHHHHHHHHHHhcccccccceeeEEEEe
Confidence 356667789999999998777777666 689999988765322 234667788888888888877788887764322
Q ss_pred HHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCC
Q 000934 257 IDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYT 336 (1219)
Q Consensus 257 l~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~ 336 (1219)
-..+- ++|...|-..-+.+-+++..|+-. ..+..|. |+. + ..|+
T Consensus 252 ~plli---ded~~~r~~g~eii~nL~~~~Gl~----------~~vs~mr--pDi--------------~-----~~de-- 295 (975)
T COG5181 252 GPLLI---DEDLKRRCMGREIILNLVYRCGLG----------FSVSSMR--PDI--------------T-----SKDE-- 295 (975)
T ss_pred ecccc---CccHHHhcccHHHHHHHHHHhccc----------eeeeecc--CCc--------------c-----cccH--
Confidence 22222 455555555555566666666611 0111111 111 0 0111
Q ss_pred CCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhccc-chhHHHHHHHHHHHHHHHhcccCccccCCCCCC
Q 000934 337 DDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKER-EENVKMDVFNTFIELVRQTGNVTKGQIDNNELN 415 (1219)
Q Consensus 337 dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~-~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 415 (1219)
-||....++.+.++..++ .+.++|.|-+.-..| .|.-|...+.+...+..-.|.
T Consensus 296 -------YVRnvt~ra~~vva~alg------v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~------------ 350 (975)
T COG5181 296 -------YVRNVTGRAVGVVADALG------VEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGR------------ 350 (975)
T ss_pred -------HHHHHHHHHHHHHHHhhC------cHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCc------------
Confidence 589999999999888776 234445443333444 677788777777777665542
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHH
Q 000934 416 PRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTR 495 (1219)
Q Consensus 416 ~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~ 495 (1219)
...+++..+++.+.+.++|.+..+| ..+...++.+++..++.-...+..++..+.+..+... ...-..-+.+.+
T Consensus 351 ---s~l~hl~~l~~ci~~~l~D~~~~vR-i~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hr--gk~l~sfLkA~g 424 (975)
T COG5181 351 ---SRLSHLGPLLKCISKLLKDRSRFVR-IDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHR--GKELVSFLKAMG 424 (975)
T ss_pred ---cHHhhhhhHHHHHHHHhhccceeee-ehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcC--CchHHHHHHHhc
Confidence 2356889999999999999999999 9988999999987655444566666666665554321 122223334444
Q ss_pred HHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccC------CCCCCcccH-----------
Q 000934 496 LVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEG------LGFDFKPYV----------- 558 (1219)
Q Consensus 496 ~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~------~~~~~~~~l----------- 558 (1219)
-++--++|+-.--|-...+..+...++.++-+..-.-+.+ ...|...+..... ...-|.++-
T Consensus 425 ~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v-~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~ 503 (975)
T COG5181 425 FIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVV-ERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSY 503 (975)
T ss_pred cccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHH-HHHHhccCCCCHHHHHHhhcHHhhchHHHhhhccccccc
Confidence 4444444443333444555555555554443322222222 2222111110000 000000000
Q ss_pred ----------------HHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcc-cccc-hhhhHHHHHHHhhcCCchH-H
Q 000934 559 ----------------QPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD-NLGA-ELPACLPVLVDRMGNEITR-L 619 (1219)
Q Consensus 559 ----------------~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~-~l~~-~~~~~l~~L~~~L~~e~~r-~ 619 (1219)
+.+...+++-.+ |....-|.-+..+...++..+|. .+.. ....++.-++-.++..++. .
T Consensus 504 k~v~~ttvilAk~~g~~~v~~kil~~~~--De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~ 581 (975)
T COG5181 504 KQVVLTTVILAKMGGDPRVSRKILEYYS--DEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVG 581 (975)
T ss_pred ceeehhHHHHHHHcCChHHHHHHHhhcc--CCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccccc
Confidence 001111111111 11122333344445555555443 2322 1222223333233222211 1
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCCh
Q 000934 620 TAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDL 699 (1219)
Q Consensus 620 ~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~ 699 (1219)
-.+.+++.+..+- .....|+++.++..+...|+.....+|..++...+.|+.-..++-..+.+..+=..|...+.+.++
T Consensus 582 ~il~~f~tv~vsl-~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~yp 660 (975)
T COG5181 582 LILPCFSTVLVSL-EFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYP 660 (975)
T ss_pred EEEecccceeeeh-hhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccH
Confidence 1122333333221 112268999999999999998888899999888887765443322233444455556777888888
Q ss_pred hhhHHHHHHHHHHhhccc---CCCchhHhHhhhhHHHHHHHhhhcccchhhHHHHHHHHHHHHhhcCCChHHHHHHHhcc
Q 000934 700 HMTALALELCCTLMADKR---SSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSS 776 (1219)
Q Consensus 700 ~~~~~al~~l~~l~~~~~---~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~~~l~~~~~~~~~~l~~~Ll~~ 776 (1219)
.++...+.++..+..... .+| -...++|.+.-++++. +...-.+...+++.++...+....
T Consensus 661 EvLgsil~Ai~~I~sv~~~~~mqp-----Pi~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~~peyi~--------- 724 (975)
T COG5181 661 EVLGSILKAICSIYSVHRFRSMQP-----PISGILPSLTPILRNK--HQKVVANTIALVGTICMNSPEYIG--------- 724 (975)
T ss_pred HHHHHHHHHHHHHhhhhcccccCC-----chhhccccccHhhhhh--hHHHhhhHHHHHHHHHhcCcccCC---------
Confidence 888888888777765311 222 2235666666666544 222223344555555543321100
Q ss_pred CCCCCCCcchhhhhhhhhhhHhhhhhhccCccchhhHHHHHHHHhhcCCCCchHHHHHHHHHHHhhhccCCCCCccchHH
Q 000934 777 AKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIEN 856 (1219)
Q Consensus 777 ~~~~~~~~~l~~~a~~~~a~~i~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~laL~~Lgeig~~~~~~~~~~l~~ 856 (1219)
.+++-. -|+ .+++.+++ .+-+.|--|-.++|-|.+.+++ .++.+
T Consensus 725 ---------~rEWMR----Icf-----------------eLvd~Lks---~nKeiRR~A~~tfG~Is~aiGP---qdvL~ 768 (975)
T COG5181 725 ---------VREWMR----ICF-----------------ELVDSLKS---WNKEIRRNATETFGCISRAIGP---QDVLD 768 (975)
T ss_pred ---------HHHHHH----HHH-----------------HHHHHHHH---hhHHHHHhhhhhhhhHHhhcCH---HHHHH
Confidence 011110 011 12222331 2223455577788888887775 45788
Q ss_pred HHHHhcCCCchhHhHHHHHHHHhhhhcCcc-cchHHHHHHhccc-cchhHHHHHHHHHHHhhccccchhhhhHHHHHHHH
Q 000934 857 VIIESFQSPFEEIKSAASYALGNIAVGNLS-KFLPFILDQIDNQ-QKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILN 934 (1219)
Q Consensus 857 ~ll~~l~~~~e~vR~aAa~aLG~l~~~~~~-~~lp~il~~l~~~-~~~~~~~l~alkeii~~~~~~~~~~~~~~~~~i~~ 934 (1219)
+++..++..+...|.+.+.|+|-++..+.. ..+|.++...... ...|.-.|.|+-.+.+..+ .....|+-.|.+
T Consensus 769 ~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig----~~s~dYvy~itP 844 (975)
T COG5181 769 ILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG----QASLDYVYSITP 844 (975)
T ss_pred HHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH----HHHHHHHHHhhH
Confidence 888888888888899999999988865543 4689999988764 3567778888877776553 233457777777
Q ss_pred HHHhhccCCccchHhHHHHHHhhhhccCcc--------cchHHHHHHhcCCCchhhHHH---HhhhHhhhccCCchhhhh
Q 000934 935 LLFNHCESEEEGVRNVVAECLGKIALIEPA--------KLVPALKVRTTSSAAFTRATV---VIAIKYSIVERPEKIDEI 1003 (1219)
Q Consensus 935 ~L~~~~~~~~e~~r~~~ae~LG~l~~~~p~--------~~lp~l~~~l~~~~~~~R~~~---~~~~k~~~~~~~~~~~~~ 1003 (1219)
.|-.++-|.+.--|..++..+-.|+++.|. .++..|-..+-+++|.+.... +.++...+..
T Consensus 845 lleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~-------- 916 (975)
T COG5181 845 LLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS-------- 916 (975)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc--------
Confidence 777777676666677888888888887664 222222222345566543222 2222222211
Q ss_pred hhHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCchhhhchhh
Q 000934 1004 IFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLP 1046 (1219)
Q Consensus 1004 l~~~i~~~l~~l~D~~~~vR~~a~~~L~~~~~~~p~~i~~~l~ 1046 (1219)
..++.-+.++|..|+..||+.=....|.+-+-..+.+.|+++
T Consensus 917 -g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~~damvp~yp 958 (975)
T COG5181 917 -GAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFDSDAMVPCYP 958 (975)
T ss_pred -HHHHHHHHHhccCchHHHHHHHHHHHhhhhhccccccccccc
Confidence 123444566888899999998888888887777777666653
No 19
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=8.1e-14 Score=157.82 Aligned_cols=520 Identities=16% Similarity=0.213 Sum_probs=329.7
Q ss_pred cCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCC-cchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHH
Q 000934 56 DDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGK-DQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTK 134 (1219)
Q Consensus 56 ~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~-~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~ 134 (1219)
.|++..|+..-.+........-+.+++..+.+.--+.+.+.. .-.|.....--.++--.+.. ..+-...++-++++
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~---~d~~~~~~~~~~~~ 103 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQI---VDPRPISIIEILLE 103 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccc---cCcchhHHHHHHHH
Confidence 688888887666555555554455555565555555554322 11222111111111111111 01112344556666
Q ss_pred hhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHH--HHHHHH
Q 000934 135 GITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL--AKATIE 212 (1219)
Q Consensus 135 ~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~--~~l~~~ 212 (1219)
.+..+ .+.++.....+|..+....... .....++.+...++.....-|+.+...+..+..-.+-..+ ..++..
T Consensus 104 ~~~tp--s~~~q~~~~~~l~~~~~~~~~~---~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~ 178 (569)
T KOG1242|consen 104 ELDTP--SKSVQRAVSTCLPPLVVLSKGL---SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDN 178 (569)
T ss_pred hcCCC--cHHHHHHHHHHhhhHHHHhhcc---CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHH
Confidence 55543 5778877777776665433221 2344555566666666778888888888888766554432 245666
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCch-hhcc
Q 000934 213 VVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR-DISS 291 (1219)
Q Consensus 213 ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~-~~~~ 291 (1219)
+...+++.+. ...|+.+..++.......|..|.||+..+.|.++..+. +-..++|+++..+...+....+. .+..
T Consensus 179 l~~ai~dk~~-~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~---d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ 254 (569)
T KOG1242|consen 179 LSKAIIDKKS-ALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFG---DKINKVREAAVEAAKAIMRCLSAYAVKL 254 (569)
T ss_pred HHHHhcccch-hhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhh---ccchhhhHHHHHHHHHHHHhcCcchhhH
Confidence 6666665543 24566788999999999999999999999999999987 57889999999999998887663 2333
Q ss_pred cHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHH
Q 000934 292 YCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEA 371 (1219)
Q Consensus 292 ~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i 371 (1219)
+++.++..+. +..|+-..+|..+++.+..+.|..++..++.+
T Consensus 255 llpsll~~l~--------------------------------------~~kWrtK~aslellg~m~~~ap~qLs~~lp~i 296 (569)
T KOG1242|consen 255 LLPSLLGSLL--------------------------------------EAKWRTKMASLELLGAMADCAPKQLSLCLPDL 296 (569)
T ss_pred hhhhhHHHHH--------------------------------------HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHh
Confidence 4444333221 12699999999999999999999999999999
Q ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHH
Q 000934 372 CPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVL 451 (1219)
Q Consensus 372 ~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L 451 (1219)
+|.+.+.+.|..+.||.+...++..+.....+ | .++.+ ++.+..++.+++.++. .|+..|
T Consensus 297 iP~lsevl~DT~~evr~a~~~~l~~~~svidN------------~--dI~~~----ip~Lld~l~dp~~~~~--e~~~~L 356 (569)
T KOG1242|consen 297 IPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN------------P--DIQKI----IPTLLDALADPSCYTP--ECLDSL 356 (569)
T ss_pred hHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc------------H--HHHHH----HHHHHHHhcCcccchH--HHHHhh
Confidence 99999999999999999999998887665432 2 34444 4555566677664443 555444
Q ss_pred HH--HHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccC-CCCCchhhhhhhHHHHHHHhcCCchHH
Q 000934 452 RE--LVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH-SPPVFHPYIKALSSPVLAAVGERYYKV 528 (1219)
Q Consensus 452 ~~--L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~-~~~~~~~~l~~i~p~l~~~l~d~~~~v 528 (1219)
+. ++.... .+.+.-++|.+.+.+.+++. ..+-.+...++.++.-. .|..+.||++.++|.+-..+.|..+++
T Consensus 357 ~~ttFV~~V~---~psLalmvpiL~R~l~eRst--~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEv 431 (569)
T KOG1242|consen 357 GATTFVAEVD---APSLALMVPILKRGLAERST--SIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEV 431 (569)
T ss_pred cceeeeeeec---chhHHHHHHHHHHHHhhccc--hhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhH
Confidence 43 222211 25788899999999998864 33444455555554433 577899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHH
Q 000934 529 TAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVL 608 (1219)
Q Consensus 529 ~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L 608 (1219)
|..+.++++.+.+.++.. .| +.+.+.+.+.+..... .--|..+...+++++...|. .++..+++.+
T Consensus 432 R~vaarAL~~l~e~~g~~------~f----~d~~p~l~e~~~~~k~-~~~~~g~aq~l~evl~~~~v---~~~~~~~~~~ 497 (569)
T KOG1242|consen 432 RAVAARALGALLERLGEV------SF----DDLIPELSETLTSEKS-LVDRSGAAQDLSEVLAGLGV---EKVEDILPEI 497 (569)
T ss_pred HHHHHHHHHHHHHHHHhh------cc----cccccHHHHhhccchh-hhhhHHHhhhHHHHHhcccc---hHHHHHHHHH
Confidence 999999999999887653 22 2222222332221111 12255566667776665543 3445555554
Q ss_pred HHhhcC----CchHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000934 609 VDRMGN----EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLG 665 (1219)
Q Consensus 609 ~~~L~~----e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~ 665 (1219)
.....+ +..|..-+..+.-+ ......++.+|+.++++.+...+.++++..+..+++
T Consensus 498 ~a~~~~~~~~~~~~dg~~~~~~~l-p~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~ 557 (569)
T KOG1242|consen 498 LANASSVLIDERIRDGVIWLFYLL-PYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALE 557 (569)
T ss_pred HHHHhhccchhhhccCeeehhhcc-chhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhh
Confidence 432211 11222222222111 111233568999999998888887777766655444
No 20
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=2.5e-12 Score=156.61 Aligned_cols=600 Identities=16% Similarity=0.129 Sum_probs=372.3
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhcccc-CCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhH
Q 000934 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKES-FKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRV 82 (1219)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~-~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~ 82 (1219)
..+..+..+..|+.|.+|..++-=|...++.-. ..--.-...+|.......|.|.+.-+|-.|.+-+|-+-.--....-
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH
Confidence 345556667899999999999877776665522 1111133456778888999999999999999999855433233334
Q ss_pred HHHHHHHHHHhcCCCcchh------------------hH-HHHH---HHHHHhhcCChhhhHHHHHhHhHHHHHhhhccC
Q 000934 83 VEMTDKLCIKLLNGKDQHR------------------DI-ASIA---LKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKD 140 (1219)
Q Consensus 83 ~~l~~~L~~~~~~~~~~~r------------------~~-a~~a---L~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~ 140 (1219)
..+++.|...+..++-... ++ .-.. |-++.++++.|.+. =++.+ +.+.+
T Consensus 898 ~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLV--------YKFM~-LAnh~ 968 (1702)
T KOG0915|consen 898 KSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLV--------YKFMQ-LANHN 968 (1702)
T ss_pred HHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHH--------HHHHH-Hhhhh
Confidence 5677777766654321100 00 0001 11122233222221 12222 22223
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHh
Q 000934 141 MNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASS---LSDDLLAKATIEVVRNL 217 (1219)
Q Consensus 141 ~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~---~~~~~~~~l~~~ll~~l 217 (1219)
..+.-+.+|..-++.++++.|..+.||...+++.+..+--||...|+..-....+.+..- .-+.++++++..++.++
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~l 1048 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNL 1048 (1702)
T ss_pred chhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhc
Confidence 468889999999999999999999999999999999999999999998777777777643 23447899999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhh-hhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhc----cc
Q 000934 218 RSKGAKPEMIRTNIQMVGALSRAVG-YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDIS----SY 292 (1219)
Q Consensus 218 ~~~~~~~~~~~~~i~~l~~l~~~~~-~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~----~~ 292 (1219)
.+..| .+|+.++-++..+.++-| ..+..+++++-..++..+. |-.+.+|+++-.+...+...|-.... .-
T Consensus 1049 t~kew--RVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmD---DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1049 TSKEW--RVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMD---DIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred cchhH--HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence 98888 699999999999999876 4677788888888887765 45677999887777666444322111 11
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 000934 293 CDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEAC 372 (1219)
Q Consensus 293 l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~ 372 (1219)
-.+++..++.++- |+.. .++ --.|||.+..++-.++.+.|..+.+++.+++
T Consensus 1124 ~~~~l~~iLPfLl-~~gi------------------------ms~----v~evr~~si~tl~dl~Kssg~~lkP~~~~LI 1174 (1702)
T KOG0915|consen 1124 GKEALDIILPFLL-DEGI------------------------MSK----VNEVRRFSIGTLMDLAKSSGKELKPHFPKLI 1174 (1702)
T ss_pred HHHHHHHHHHHHh-ccCc------------------------ccc----hHHHHHHHHHHHHHHHHhchhhhcchhhHHH
Confidence 2344555555542 2221 111 1269999999999999999999999999999
Q ss_pred HHHHhhhcccchhHHHHHH-HHHH---HHHHHhcccCccccCCC---CCChhHHH-HHHHHHHHHHHHHHhccc-Cccch
Q 000934 373 PKLIDRFKEREENVKMDVF-NTFI---ELVRQTGNVTKGQIDNN---ELNPRWLL-KQEVSKIVKSINRQLREK-SIKTK 443 (1219)
Q Consensus 373 p~Li~~~~d~~~~Vr~~~~-~~l~---~l~~~~~~~~~~~~~~~---~~~~~~~L-~~~~p~lv~~l~~~L~~~-~~~~r 443 (1219)
|.|+..+.+-|+.|-.... ++.. +.++..+.+ -.+..+. -+-|...+ ...+.++++.+.+.+++. ...+|
T Consensus 1175 p~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s-~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tk 1253 (1702)
T KOG0915|consen 1175 PLLLNAYSELEPQVLNYLSLRLINIETEALDTLRAS-AAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTK 1253 (1702)
T ss_pred HHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHh-hhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcc
Confidence 9999888777776653211 1100 001100000 0000000 00011111 122345555555555543 24688
Q ss_pred hhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcC
Q 000934 444 QVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGE 523 (1219)
Q Consensus 444 ~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d 523 (1219)
.+|..++..|+...+..+.||...++..++..++|++ +.++..-..+++-+++..+++.++.++..++..+.....+
T Consensus 1254 -vg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRN--esv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es 1330 (1702)
T KOG0915|consen 1254 -VGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRN--ESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES 1330 (1702)
T ss_pred -hhHHHHHHHHHHHhccccCcchhHHHHHHhhcccccc--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999888899999999999999999986 6778777788899998887777777777776666544333
Q ss_pred CchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCC---HHHHHHHHHHHHHHHHhhcccccc-
Q 000934 524 RYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQD---QEVKECAISCMGLVISTFGDNLGA- 599 (1219)
Q Consensus 524 ~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d---~~vr~~Ai~alg~l~~~~g~~l~~- 599 (1219)
.+ ..++.++..+..+. ...+..|.+.++|.++= ..++.+ ++++.. ...++... |..--+
T Consensus 1331 ~~----siscatis~Ian~s-------~e~Lkn~asaILPLiFL--a~~ee~Ka~q~Lw~d---vW~e~vsg-gagtvrl 1393 (1702)
T KOG0915|consen 1331 LK----SISCATISNIANYS-------QEMLKNYASAILPLIFL--AMHEEEKANQELWND---VWAELVSG-GAGTVRL 1393 (1702)
T ss_pred cc----chhHHHHHHHHHhh-------HHHHHhhHHHHHHHHHH--HHhHHHHHHHHHHHH---HHHHhCCC-Ccchhhh
Confidence 32 33455555555443 22467788888886553 322221 222211 11121111 222223
Q ss_pred hhhhHHHHHHHhhcCCc---hHHHHHHHHHHHhcCCCCCch-hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 000934 600 ELPACLPVLVDRMGNEI---TRLTAVKAFAVIAASPLHIDL-TCVLEHVIAELTAFLRKANRALRQATLGTMN 668 (1219)
Q Consensus 600 ~~~~~l~~L~~~L~~e~---~r~~a~~al~~i~~s~~~~~~-~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~ 668 (1219)
++..++..+++...++. .|..+.+++-.++... .... .|++-.+.+.+...+..--+.-+...+.++.
T Consensus 1394 ~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~-sss~~~p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~ 1465 (1702)
T KOG0915|consen 1394 YLLEILNLICENITNNESWKLRKQAAKAIRVIAEGL-SSSAPIPVILKLALSLLDTLNGRIWDGKEEILKALA 1465 (1702)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccc-cccCChHHHHHHHHHHHHHhhccccccHHHHHHHHH
Confidence 77788888887776654 4556666666666211 1111 3555555544444443333333333333333
No 21
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=5.8e-12 Score=153.50 Aligned_cols=576 Identities=18% Similarity=0.217 Sum_probs=333.4
Q ss_pred HHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcCh-hh----HHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcC
Q 000934 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE-PR----VVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVT 116 (1219)
Q Consensus 42 ~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~-~~----~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~ 116 (1219)
.....+.+.+.+.+.+||+.+|+++.--+=.++.+++. +. ..+|.......+.+.++-.+|+|+.||+-+- +++
T Consensus 814 ~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVY-elg 892 (1702)
T KOG0915|consen 814 TRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVY-ELG 892 (1702)
T ss_pred ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEE-ecC
Confidence 44566778888999999999999998777777777662 22 2344433334444445557899999997554 444
Q ss_pred ChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhc-CChHHHHHHHHHHHH
Q 000934 117 TSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLS-ANQASVRKKSVSCIA 195 (1219)
Q Consensus 117 ~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~-~~~~~vrk~a~~~l~ 195 (1219)
.........+.++..|..|=... ..|..+. ++ |.+ ..|+ .|+. =+-.+-+=|.
T Consensus 893 d~~~k~~LV~sL~~tl~~Gkr~~---~~vs~eT-----el---Fq~--------------G~Lg~Tp~G-g~isTYKELc 946 (1702)
T KOG0915|consen 893 DSSLKKSLVDSLVNTLTGGKRKA---IKVSEET-----EL---FQE--------------GTLGKTPDG-GKISTYKELC 946 (1702)
T ss_pred CchhHHHHHHHHHHHHhcccccc---ceeccch-----hc---ccC--------------CcCCCCCCC-CcchHHHHHH
Confidence 43455555565665655421110 0111000 00 000 1122 1111 1112334456
Q ss_pred HHHhhCCHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHH
Q 000934 196 SLASSLSDDLLAKATIEVVRNLRS-KGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYS 274 (1219)
Q Consensus 196 ~l~~~~~~~~~~~l~~~ll~~l~~-~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~a 274 (1219)
+|+.-+++. +++=..++...+ ..| ..|+++..-||+|+..++.++.||++++||.+..+-= |+|..++.+.
T Consensus 947 ~LASdl~qP---dLVYKFM~LAnh~A~w--nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~y---DP~~~Vq~aM 1018 (1702)
T KOG0915|consen 947 NLASDLGQP---DLVYKFMQLANHNATW--NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQY---DPDKKVQDAM 1018 (1702)
T ss_pred HHHhhcCCh---HHHHHHHHHhhhhchh--hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhcc---CCcHHHHHHH
Confidence 667666654 122223333332 345 4678899999999999999999999999999998765 6888999998
Q ss_pred HHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHH
Q 000934 275 LQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLA 354 (1219)
Q Consensus 275 l~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~ 354 (1219)
..-|+.++.--...+..|+++|+.-++.-+. +-.|+||.++|-+|.
T Consensus 1019 ~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt----------------------------------~kewRVReasclAL~ 1064 (1702)
T KOG0915|consen 1019 TSIWNALITDSKKVVDEYLNEILDELLVNLT----------------------------------SKEWRVREASCLALA 1064 (1702)
T ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHHhcc----------------------------------chhHHHHHHHHHHHH
Confidence 8888888876666777899999988776653 124999999999999
Q ss_pred HHHhcCc-hhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHH
Q 000934 355 ALIVSRP-EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINR 433 (1219)
Q Consensus 355 ~li~~~~-~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~ 433 (1219)
.++..+| +.+.+...++-..+...+.|=.|.||.++-.+...+-+-.-..- + ...|. .=.+.+..++|.+..
T Consensus 1065 dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~----d-~~~~~--~~~~~l~~iLPfLl~ 1137 (1702)
T KOG0915|consen 1065 DLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC----D-VTNGA--KGKEALDIILPFLLD 1137 (1702)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----c-cCCcc--cHHHHHHHHHHHHhc
Confidence 9999988 33333333333333333456678999877655444433221000 0 00110 112233344444332
Q ss_pred H-hcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCc---------chhHHHHHHHHHHHhccCCC
Q 000934 434 Q-LREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSST---------SNLKIEALTFTRLVLSSHSP 503 (1219)
Q Consensus 434 ~-L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~---------~~~~~~al~~l~~l~~~~~~ 503 (1219)
. .-++...+| -.++.++-.|+...|+.+.+|++.++|.+.+....-... .+...+++..++.=+...+|
T Consensus 1138 ~gims~v~evr-~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akssp 1216 (1702)
T KOG0915|consen 1138 EGIMSKVNEVR-RFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSP 1216 (1702)
T ss_pred cCcccchHHHH-HHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCc
Confidence 1 224556688 889999999999999999999999999999887643210 11233444444332222222
Q ss_pred --CCc---h-----hhhhhhHHHHHHHhcCCch-HHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhc
Q 000934 504 --PVF---H-----PYIKALSSPVLAAVGERYY-KVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ 572 (1219)
Q Consensus 504 --~~~---~-----~~l~~i~p~l~~~l~d~~~-~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~ 572 (1219)
+.+ - ..+..++|.+...+...-- ..+..+-.++..++..+ +.+..||...++.+++..++
T Consensus 1217 mmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~-------~~emtP~sgKll~al~~g~~-- 1287 (1702)
T KOG0915|consen 1217 MMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRL-------GSEMTPYSGKLLRALFPGAK-- 1287 (1702)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHh-------ccccCcchhHHHHHHhhccc--
Confidence 000 1 2356777777776653311 11222333445555544 55799999999999999876
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcc-cccchhhhHHHHHHHhhcCCchHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000934 573 DQDQEVKECAISCMGLVISTFGD-NLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAF 651 (1219)
Q Consensus 573 d~d~~vr~~Ai~alg~l~~~~g~-~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~ 651 (1219)
|....+|..-..++|.++....+ .....+...+.-++. +.+..+..++..+..|++.. ..-+..|...++|.+.-.
T Consensus 1288 dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~--k~es~~siscatis~Ian~s-~e~Lkn~asaILPLiFLa 1364 (1702)
T KOG0915|consen 1288 DRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLG--KDESLKSISCATISNIANYS-QEMLKNYASAILPLIFLA 1364 (1702)
T ss_pred cccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhc--cCCCccchhHHHHHHHHHhh-HHHHHhhHHHHHHHHHHH
Confidence 45677888888899999887644 333333333333322 23333455666666565432 233566667777754211
Q ss_pred H---HHhhhHHHHHHHHHHHHHHHHh-CCC-CC-cchHHHHHHHHhhhcCCCCh-hhhHHHHHHHHHHh
Q 000934 652 L---RKANRALRQATLGTMNSLVVAY-GDK-IG-ASAYEVIIVELSTLISDSDL-HMTALALELCCTLM 713 (1219)
Q Consensus 652 L---~~~~~~lr~~al~~L~~l~~~~-~~~-l~-~~~~~~il~~l~~~l~~~d~-~~~~~al~~l~~l~ 713 (1219)
- .|.+..++ ..+.... +.. -. +-...+++..++..+..++. .++..+...+..+.
T Consensus 1365 ~~ee~Ka~q~Lw-------~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a 1426 (1702)
T KOG0915|consen 1365 MHEEEKANQELW-------NDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIA 1426 (1702)
T ss_pred HhHHHHHHHHHH-------HHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHc
Confidence 1 12233333 2232221 111 11 11346677777776655553 33434444444443
No 22
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.53 E-value=1e-10 Score=143.83 Aligned_cols=473 Identities=16% Similarity=0.188 Sum_probs=311.5
Q ss_pred HHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHH
Q 000934 9 ILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDK 88 (1219)
Q Consensus 9 ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~ 88 (1219)
++.-+.+.|...|.++---+.... ..+++...-+++.+.+-|.++|+.+|..|.++++.+. .++..+.+++.
T Consensus 47 vi~l~~s~~~~~Krl~yl~l~~~~-----~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~ 118 (526)
T PF01602_consen 47 VIKLISSKDLELKRLGYLYLSLYL-----HEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPD 118 (526)
T ss_dssp HHCTCSSSSHHHHHHHHHHHHHHT-----TTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHh-----hcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHH
Confidence 333344555555555443332222 2355667778999999999999999999999999987 46677888889
Q ss_pred HHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHh-HhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHh
Q 000934 89 LCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTS-LTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSND 167 (1219)
Q Consensus 89 L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~-l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~ 167 (1219)
+...+.++++.+|..|++|+..++...|. .++. ++|.+.+.+.+. ++.|...|+.++.++ ++........
T Consensus 119 v~~ll~~~~~~VRk~A~~~l~~i~~~~p~------~~~~~~~~~l~~lL~d~--~~~V~~~a~~~l~~i-~~~~~~~~~~ 189 (526)
T PF01602_consen 119 VIKLLSDPSPYVRKKAALALLKIYRKDPD------LVEDELIPKLKQLLSDK--DPSVVSAALSLLSEI-KCNDDSYKSL 189 (526)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHHHHCHC------CHHGGHHHHHHHHTTHS--SHHHHHHHHHHHHHH-HCTHHHHTTH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCHH------HHHHHHHHHHhhhccCC--cchhHHHHHHHHHHH-ccCcchhhhh
Confidence 99999899999999999999999976553 2333 577787777665 589999999999998 3333322234
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhc
Q 000934 168 HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFG 246 (1219)
Q Consensus 168 ~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~-~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 246 (1219)
.+.+.+.+...+..+++-++...+..+..++.......- ..+++.+...+++.+. .+. ++++..+..-.+..
T Consensus 190 ~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~--~V~---~e~~~~i~~l~~~~-- 262 (526)
T PF01602_consen 190 IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSP--SVV---YEAIRLIIKLSPSP-- 262 (526)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHSSSH--
T ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhcccc--HHH---HHHHHHHHHhhcch--
Confidence 556666666666788888888888888876654333221 4577777777764332 333 44454444333321
Q ss_pred cchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCccccccccc
Q 000934 247 PHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEE 326 (1219)
Q Consensus 247 ~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~ 326 (1219)
+.+..+++.+...+. ..+.++|-.+++++..++...|..+. +..-.+ .++.+|+
T Consensus 263 ~~~~~~~~~L~~lL~---s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~----~~l~~~~------------------ 316 (526)
T PF01602_consen 263 ELLQKAINPLIKLLS---SSDPNVRYIALDSLSQLAQSNPPAVF-NQSLIL----FFLLYDD------------------ 316 (526)
T ss_dssp HHHHHHHHHHHHHHT---SSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHH----HHHHCSS------------------
T ss_pred HHHHhhHHHHHHHhh---cccchhehhHHHHHHHhhcccchhhh-hhhhhh----heecCCC------------------
Confidence 166788999999888 47888999999999999888754444 222222 2332221
Q ss_pred chhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhccc-chhHHHHHHHHHHHHHHHhcccC
Q 000934 327 EEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKER-EENVKMDVFNTFIELVRQTGNVT 405 (1219)
Q Consensus 327 ~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~-~~~Vr~~~~~~l~~l~~~~~~~~ 405 (1219)
| -.||+.+..++..++... -+..+++.|.+.+++. ++.+|.+++.+++.+.....
T Consensus 317 -------------d--~~Ir~~~l~lL~~l~~~~------n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~--- 372 (526)
T PF01602_consen 317 -------------D--PSIRKKALDLLYKLANES------NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP--- 372 (526)
T ss_dssp -------------S--HHHHHHHHHHHHHH--HH------HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG---
T ss_pred -------------C--hhHHHHHHHHHhhccccc------chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC---
Confidence 1 268999999998887632 3445666666666554 66799999999999876542
Q ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcch
Q 000934 406 KGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSN 485 (1219)
Q Consensus 406 ~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~ 485 (1219)
......++.+.+.+......+. ..++..+..++...|+. -..++..+.+.+.+.. .+.
T Consensus 373 ----------------~~~~~~v~~l~~ll~~~~~~~~-~~~~~~i~~ll~~~~~~----~~~~l~~L~~~l~~~~-~~~ 430 (526)
T PF01602_consen 373 ----------------PDAEWYVDTLLKLLEISGDYVS-NEIINVIRDLLSNNPEL----REKILKKLIELLEDIS-SPE 430 (526)
T ss_dssp ----------------SSHHHHHHHHHHHHHCTGGGCH-CHHHHHHHHHHHHSTTT----HHHHHHHHHHHHTSSS-SHH
T ss_pred ----------------chHHHHHHHHHHhhhhcccccc-chHHHHHHHHhhcChhh----hHHHHHHHHHHHHHhh-HHH
Confidence 1133445666666665555566 77788888887765443 2334555666666533 356
Q ss_pred hHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHH
Q 000934 486 LKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAI 565 (1219)
Q Consensus 486 ~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~l 565 (1219)
++..++.++|........ .. ....++..+.....+....++...+.++..+.....+ ....+.+++.+
T Consensus 431 ~~~~~~wilGEy~~~~~~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~---------~~~~~~i~~~~ 498 (526)
T PF01602_consen 431 ALAAAIWILGEYGELIEN--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPE---------NEVQNEILQFL 498 (526)
T ss_dssp HHHHHHHHHHHHCHHHTT--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCS---------TTHHHHHHHHH
T ss_pred HHHHHHhhhcccCCcccc--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCc---------hhhHHHHHHHH
Confidence 778888888988654432 11 4566777777777777778999999998888765321 01123455555
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHH
Q 000934 566 MSRLTNQDQDQEVKECAISCMGLV 589 (1219)
Q Consensus 566 l~~l~~~d~d~~vr~~Ai~alg~l 589 (1219)
.+.....+.+.+||++|...++-+
T Consensus 499 ~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 499 LSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHH
Confidence 544432366899999999876543
No 23
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=3.4e-10 Score=125.43 Aligned_cols=396 Identities=13% Similarity=0.125 Sum_probs=277.5
Q ss_pred HHHHhccCccchhhHHHHHHHHHHhhhcCh----hhHHHHHHHHHHHhc-CCCcchhhHHHHHHHHHHhhcCChhhhHHH
Q 000934 50 IVVQQLDDVAGDVSGLAVKCLAPLVKKVSE----PRVVEMTDKLCIKLL-NGKDQHRDIASIALKTIIAEVTTSSLAQSI 124 (1219)
Q Consensus 50 ~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~----~~~~~l~~~L~~~~~-~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~ 124 (1219)
.+.+.|.|+--|=|++|.--+..+++.+-. .++.++++.|+.... +++...|.++.+|+..+.-.++.... . +
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~-~-Y 81 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDA-G-Y 81 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccH-H-H
Confidence 456889999999999999999888875333 456788888887665 34444566888888887766665322 2 7
Q ss_pred HHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhC--C
Q 000934 125 HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSL--S 202 (1219)
Q Consensus 125 ~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~--~ 202 (1219)
.+.++|.++..+.++ +..+|-.||+.+-.+.+-....+-.+.+.+.+++.....|++..||..| ..+..+..-+ +
T Consensus 82 ~~~iv~Pv~~cf~D~--d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte 158 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQ--DSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTE 158 (675)
T ss_pred HHHhhHHHHHhccCc--cceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccc
Confidence 889999998888876 5789999999999998877776778999999999999999888887654 4444444322 1
Q ss_pred HH---HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 000934 203 DD---LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALE 279 (1219)
Q Consensus 203 ~~---~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~ 279 (1219)
.+ .++.++|-+-..+...+. ..|...+.-+..+-..-+..|-.|++.+.+.++++++ |+.+|+|..+-.++.
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~--~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~Ls---D~s~eVr~~~~t~l~ 233 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINP--MTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLS---DSSDEVRTLTDTLLS 233 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhc---CCcHHHHHHHHHHHH
Confidence 11 267788888777765542 4565555544444444446899999999999999998 688999988877666
Q ss_pred HHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhc
Q 000934 280 SFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS 359 (1219)
Q Consensus 280 ~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~ 359 (1219)
.|... ++.+|...+.++. ....-.+- -....-+++.|..=+..++..
T Consensus 234 ~fL~e-------------------I~s~P~s~d~~~~-----i~vlv~~l---------~ss~~~iq~~al~Wi~efV~i 280 (675)
T KOG0212|consen 234 EFLAE-------------------IRSSPSSMDYDDM-----INVLVPHL---------QSSEPEIQLKALTWIQEFVKI 280 (675)
T ss_pred HHHHH-------------------HhcCccccCcccc-----hhhccccc---------cCCcHHHHHHHHHHHHHHhcC
Confidence 65432 2233322110000 00000000 000124677788888889998
Q ss_pred CchhhHHHHHHHHHHHHhhhcccchh-HHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhccc
Q 000934 360 RPEMLSKLYEEACPKLIDRFKEREEN-VKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREK 438 (1219)
Q Consensus 360 ~~~~l~~~~~~i~p~Li~~~~d~~~~-Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~ 438 (1219)
.|..+-.++..++..++..+.+.++. .+..+...=+.+..-.+... .+. . =-+..++..+.+.+.+.
T Consensus 281 ~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~--------~~~--~--id~~~ii~vl~~~l~~~ 348 (675)
T KOG0212|consen 281 PGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSER--------LKE--E--IDYGSIIEVLTKYLSDD 348 (675)
T ss_pred CCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhh--------hcc--c--cchHHHHHHHHHHhhcc
Confidence 88777777888887777777777763 44433333223332221100 000 0 12568899999999999
Q ss_pred CccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCC
Q 000934 439 SIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSP 503 (1219)
Q Consensus 439 ~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~ 503 (1219)
...+| .+|+.-+..+-..+|+.+--|...+.+.+...|.|++ ..+-..++.++..++.++..
T Consensus 349 ~~~tr-i~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~s--d~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 349 REETR-IAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRS--DEVVLLALSLLASICSSSNS 410 (675)
T ss_pred hHHHH-HHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCch--hHHHHHHHHHHHHHhcCccc
Confidence 99999 9999999999999999999999999999999999976 46777899999999987654
No 24
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=4.3e-07 Score=110.41 Aligned_cols=711 Identities=14% Similarity=0.166 Sum_probs=370.8
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCCh--HHHHHHHHHHHHhccCccc-hhhHHHHHHHH---HHhhhcCh
Q 000934 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADA--DLEVKLSNIVVQQLDDVAG-DVSGLAVKCLA---PLVKKVSE 79 (1219)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~--~~~~~v~~~ll~~L~D~~~-eVq~~A~k~l~---~l~~~~~~ 79 (1219)
+-.++.-.-+.-|-+|.||..-++..|..+.+-.+. ...-.+....++.++..-+ .-.....+.|. .+...+|.
T Consensus 140 ~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~ 219 (1176)
T KOG1248|consen 140 LFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPR 219 (1176)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCH
Confidence 445666667888999999999999999987765443 2223344444444443322 22222333332 22333444
Q ss_pred hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHH
Q 000934 80 PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHK 159 (1219)
Q Consensus 80 ~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~ 159 (1219)
..+..+-+.++.-+...+..++--+..+|..+....+. .+.......++..+.+.--+.+ +......=+.++.....+
T Consensus 220 ~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~-~l~a~~~a~lL~al~~l~ps~~-D~~~t~~W~~v~~~~~~~ 297 (1176)
T KOG1248|consen 220 PLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPT-ALAAELNARLLTALMTLSPSEN-DDLLTVAWLKVLNEAHDI 297 (1176)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHhCCCcc-chHHHHHHHHHHHHHHHH
Confidence 44444444444444333334455556667777766554 3333333334433332211111 233333333444444333
Q ss_pred hhhh----hhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 000934 160 FGNL----MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVG 235 (1219)
Q Consensus 160 ~g~~----l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~ 235 (1219)
+... --.+.+.+.+.++..+.++...+-..|-+++..+..-+.. +.+.+-...+..+.+-.- ...-+.+++++.
T Consensus 298 la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf-~~~~~~ilqi~s 375 (1176)
T KOG1248|consen 298 LATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKF-HAVWRFILQILS 375 (1176)
T ss_pred HHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchH-HHHHHHHHHHHH
Confidence 3221 1135677788888877777776666777777666544333 111111111222222221 134567899999
Q ss_pred HHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHH-----------------HHH
Q 000934 236 ALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDE-----------------ILH 298 (1219)
Q Consensus 236 ~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~-----------------ii~ 298 (1219)
.+...+|...+||+-..+..+-..-. .+|..-+-..-+++++.+...+.+. +-+ ++|
T Consensus 376 ~~fek~G~~s~~~l~~~L~~l~~lr~---~~d~~~~~~ld~~IGSAV~AmGPe~---vL~~lpLnl~~~s~~~~RsWLLP 449 (1176)
T KOG1248|consen 376 ALFEKCGELSGPELTKTLEGLCDLRA---SPDFFHKLQLDQCIGSAVRAMGPER---VLTILPLNLHAESLSFTRSWLLP 449 (1176)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHhhc---CCCCccHHHHHHHHHHHHHhhCHHH---HHHHcchhccccccccchhHhHH
Confidence 99999999999998877776654222 1232223234455556555544221 111 122
Q ss_pred HHHHhcccCCCCCCCCCCCcc-cccccccchhhccCCCCCCCcccH-HHHHHHHHHHHHH--HhcCchhhHHHHHHHHHH
Q 000934 299 LTLEYLSYDPNFTDNMEEDSD-DEAYEEEEEDESANEYTDDEDASW-KVRRAAAKCLAAL--IVSRPEMLSKLYEEACPK 374 (1219)
Q Consensus 299 ~~l~~l~~dpn~~~~~d~d~~-~~~~~~~~d~~~~~~~~dddD~sw-kVR~~Aa~~l~~l--i~~~~~~l~~~~~~i~p~ 374 (1219)
++-.++..-+ ....-+.--. .+. . -.-+.+ . -+.+..- -++-...++++-| ...+|--+..-|..+.|.
T Consensus 450 vLR~~i~~A~-La~F~~~ivpla~s-l-~~K~~~---l-~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~ 522 (1176)
T KOG1248|consen 450 VLRDYIIGAS-LAFFTEYIVPLAMS-L-QLKAKK---L-KEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPI 522 (1176)
T ss_pred HHHHhhccCc-HHHHHHHHHHHHHH-H-HHHHHh---h-hhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHH
Confidence 2222221000 0000000000 000 0 000000 0 0000000 1112222222211 123454445557778888
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCcc------chhhHHH
Q 000934 375 LIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIK------TKQVGAF 448 (1219)
Q Consensus 375 Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~------~r~~~~~ 448 (1219)
|...+.++. ..|..++.++..++++-.+... .......+.++-...++.++......... .| ...+
T Consensus 523 l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~------a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~-~~~L 594 (1176)
T KOG1248|consen 523 LGAALLKRP-ELRETICNSLRMLVEQNKPSSD------AAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASR-STVL 594 (1176)
T ss_pred HHHHHhcch-HhHHHHHHHHHHHHHcCCCcch------HHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHH-HHHH
Confidence 887777665 8999999999999987421100 00112234445555566666665544332 22 2222
Q ss_pred HHHH-HHHHhcchhhhhhhhhhhHhHHHhhcCCC--CcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHh-cCC
Q 000934 449 SVLR-ELVVVLPDCLADHIGSLIPGIEKSLNDKS--STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAV-GER 524 (1219)
Q Consensus 449 ~~L~-~L~~~~~~~l~~~~~~l~~~l~~~l~d~~--~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l-~d~ 524 (1219)
.... ...+..|..+ ...+...+.....+.. ..+.....-+..+..+......+ ++..+. .+..-. +..
T Consensus 595 ~~i~~~~~~~t~~dv---~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~----~vs~l~-~v~~~~e~~~ 666 (1176)
T KOG1248|consen 595 EIIRVDYFTVTPTDV---VGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTES----QVSKLF-TVDPEFENSS 666 (1176)
T ss_pred HHHHHHHhhcccHHH---HHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccch----hHHHHH-HhhHHhhccc
Confidence 2222 1122222221 1122222221111111 11122333334444443332222 233333 222222 233
Q ss_pred chHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhH
Q 000934 525 YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPAC 604 (1219)
Q Consensus 525 ~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~ 604 (1219)
..+++..+.+++..++.. .+. ......++..++..+.+.+. +.+...|..++.|+..++.-.+......++..
T Consensus 667 ~~~vQkK~yrlL~~l~~~-~s~----~~~~~q~i~~I~n~L~ds~q--s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~ 739 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSS-PSG----EGLVEQRIDDIFNSLLDSFQ--SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL 739 (1176)
T ss_pred cHHHHHHHHHHHHHHhcC-Cch----hhHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 668899999999999865 111 11234667777877777665 44567788899999999988774444455555
Q ss_pred HHHHHHhhc--CCchHHHHHHHHHHHh--cCCCC---CchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCC
Q 000934 605 LPVLVDRMG--NEITRLTAVKAFAVIA--ASPLH---IDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDK 677 (1219)
Q Consensus 605 l~~L~~~L~--~e~~r~~a~~al~~i~--~s~~~---~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~ 677 (1219)
+|-+.=.++ |+..|.+|.++|-.|. .+... ..-+..+++.+..+...+....-..+..++.++..++......
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 554443444 3457888888877766 32211 0113366777777766654443334444489999999999888
Q ss_pred CCcchHHHHHHHHhhhcCCCChhhhHHHHHHHHHHhhcccCCCch-hHhHhhhhHHHHHHHhhhcccchhhHHHHHHHHH
Q 000934 678 IGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNV-GLAVRNKVLPQALALIKSSLLQGQALVALQSFFA 756 (1219)
Q Consensus 678 l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~-~~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~~ 756 (1219)
++...++.+++.+...|..+.++++..|..++..++. ..|.. ...+.+.++|.++.+.+.. ........-.+++
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~---~~pe~~l~~~~~~LL~sll~ls~d~--k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVY---KFPEECLSPHLEELLPSLLALSHDH--KIKVRKKVRLLLE 894 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---cCCHHHHhhhHHHHHHHHHHHHHhh--hHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999998 46652 3457778899998877542 1222234455555
Q ss_pred HHHhh
Q 000934 757 ALVYS 761 (1219)
Q Consensus 757 ~l~~~ 761 (1219)
.++..
T Consensus 895 kLirk 899 (1176)
T KOG1248|consen 895 KLIRK 899 (1176)
T ss_pred HHHHH
Confidence 55544
No 25
>PTZ00429 beta-adaptin; Provisional
Probab=99.40 E-value=1.1e-08 Score=124.81 Aligned_cols=465 Identities=14% Similarity=0.182 Sum_probs=284.5
Q ss_pred HHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHH
Q 000934 7 AAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMT 86 (1219)
Q Consensus 7 ~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~ 86 (1219)
..++.-+.+.|...|.|.--=|.++. +..++..--+++.+.+-+.|+|+.||..|.++++.+-. +..++.++
T Consensus 71 ~dVvk~~~S~d~elKKLvYLYL~~ya-----~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~---~~i~e~l~ 142 (746)
T PTZ00429 71 VDVVKLAPSTDLELKKLVYLYVLSTA-----RLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV---SSVLEYTL 142 (746)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHc-----ccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc---HHHHHHHH
Confidence 34444556666666666554444432 23445566788999999999999999999999997643 34566777
Q ss_pred HHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhH
Q 000934 87 DKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN 166 (1219)
Q Consensus 87 ~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~ 166 (1219)
..+...+.+.++-+|..|++|+..+....|. ... -..+++.|.+.+.+. ++.|...|+-+|.++....+..+..
T Consensus 143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pe--lv~--~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~~~~~l~l 216 (746)
T PTZ00429 143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ--LFY--QQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDYGSEKIES 216 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc--ccc--ccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHhCchhhHH
Confidence 7888888888889999999999998765442 100 123556666656654 6889999999999998766544322
Q ss_pred hHHHHHHHHhhhhcC-ChHHHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh-
Q 000934 167 DHERLLSALLPQLSA-NQASVRKKSVSCIASLASSLSD--DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG- 242 (1219)
Q Consensus 167 ~~~~l~~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~~--~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~- 242 (1219)
.+.. +..++..+.+ .+|. + +.+|..+..+.++ .....++..+...+++.+ +.+.-.++.++-.+....+
T Consensus 217 ~~~~-~~~Ll~~L~e~~EW~-Q---i~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N--~AVVl~Aik~il~l~~~~~~ 289 (746)
T PTZ00429 217 SNEW-VNRLVYHLPECNEWG-Q---LYILELLAAQRPSDKESAETLLTRVLPRMSHQN--PAVVMGAIKVVANLASRCSQ 289 (746)
T ss_pred HHHH-HHHHHHHhhcCChHH-H---HHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCcCCH
Confidence 2222 2333444432 3442 1 2445555555443 245678888888887765 3555555555555543221
Q ss_pred hhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhccc-CCCCCCCCCCCcccc
Q 000934 243 YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSY-DPNFTDNMEEDSDDE 321 (1219)
Q Consensus 243 ~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~-dpn~~~~~d~d~~~~ 321 (1219)
......+..+.+.++...+ .+.+++=.++..+..++...|..|.+++... |+.| ||
T Consensus 290 ~~~~~~~~rl~~pLv~L~s----s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~F------f~~~~Dp------------- 346 (746)
T PTZ00429 290 ELIERCTVRVNTALLTLSR----RDAETQYIVCKNIHALLVIFPNLLRTNLDSF------YVRYSDP------------- 346 (746)
T ss_pred HHHHHHHHHHHHHHHHhhC----CCccHHHHHHHHHHHHHHHCHHHHHHHHHhh------hcccCCc-------------
Confidence 2222233334444444332 5688999999999999999987666553321 1222 22
Q ss_pred cccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHh
Q 000934 322 AYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQT 401 (1219)
Q Consensus 322 ~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~ 401 (1219)
..||+.....|..++... .. ..++.-|.+...+.+...+..++++++.+....
T Consensus 347 ---------------------~yIK~~KLeIL~~Lane~--Nv----~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~ 399 (746)
T PTZ00429 347 ---------------------PFVKLEKLRLLLKLVTPS--VA----PEILKELAEYASGVDMVFVVEVVRAIASLAIKV 399 (746)
T ss_pred ---------------------HHHHHHHHHHHHHHcCcc--cH----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 147888888887776432 22 233344444456777888899999998886532
Q ss_pred cccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhh-cCC
Q 000934 402 GNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSL-NDK 480 (1219)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l-~d~ 480 (1219)
......++..+...+..+.. .. ..++..+..+....|... +++.+...+ .+.
T Consensus 400 -------------------~~~a~~cV~~Ll~ll~~~~~-~v-~e~i~vik~IlrkyP~~~------il~~L~~~~~~~~ 452 (746)
T PTZ00429 400 -------------------DSVAPDCANLLLQIVDRRPE-LL-PQVVTAAKDIVRKYPELL------MLDTLVTDYGADE 452 (746)
T ss_pred -------------------hHHHHHHHHHHHHHhcCCch-hH-HHHHHHHHHHHHHCccHH------HHHHHHHhhcccc
Confidence 22345556666666654332 44 456778888887766531 334443322 112
Q ss_pred CCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHH
Q 000934 481 SSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQP 560 (1219)
Q Consensus 481 ~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~ 560 (1219)
-..+..|...+..+|.+.... +..+.++..++..+.+....|+...|.++..+.-. .| +..+.
T Consensus 453 i~e~~AKaaiiWILGEy~~~I------~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~-~p----------~~~~~ 515 (746)
T PTZ00429 453 VVEEEAKVSLLWMLGEYCDFI------ENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLR-DP----------QGMEP 515 (746)
T ss_pred cccHHHHHHHHHHHHhhHhhH------hhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhc-Cc----------HHHHH
Confidence 223567777788888875432 11234444444555566678888877777666543 12 22455
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHH
Q 000934 561 IYNAIMSRLTNQDQDQEVKECAISCM 586 (1219)
Q Consensus 561 l~~~ll~~l~~~d~d~~vr~~Ai~al 586 (1219)
++..++..+...+.+++||.+|..-.
T Consensus 516 ~l~~vL~~~t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 516 QLNRVLETVTTHSDDPDVRDRAFAYW 541 (746)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 66666766665667889999998654
No 26
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.39 E-value=4.3e-09 Score=129.57 Aligned_cols=438 Identities=14% Similarity=0.175 Sum_probs=288.5
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccc
Q 000934 169 ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPH 248 (1219)
Q Consensus 169 ~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~ 248 (1219)
......+...+.++++.+|..|+.+++.+. ..+..+.+++.+.+.+.++++ .+|+.|+.++..+.+..|..+.+.
T Consensus 78 ~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~--~VRk~A~~~l~~i~~~~p~~~~~~ 152 (526)
T PF01602_consen 78 ILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSP--YVRKKAALALLKIYRKDPDLVEDE 152 (526)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSH--HHHHHHHHHHHHHHHHCHCCHHGG
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCch--HHHHHHHHHHHHHhccCHHHHHHH
Confidence 446677778899999999999999998877 677788889999888887764 799999999999999877654443
Q ss_pred hhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccch
Q 000934 249 LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEE 328 (1219)
Q Consensus 249 l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d 328 (1219)
++|.+.+.+. |.|..++..|+.++..+ +..++...+.++.++..+.+.+. +|
T Consensus 153 ---~~~~l~~lL~---d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~-~~-------------------- 204 (526)
T PF01602_consen 153 ---LIPKLKQLLS---DKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLS-DP-------------------- 204 (526)
T ss_dssp ---HHHHHHHHTT---HSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHT-CC--------------------
T ss_pred ---HHHHHhhhcc---CCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhccc-cc--------------------
Confidence 5666666665 57789999999888888 44444434666777776666552 11
Q ss_pred hhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccc
Q 000934 329 DESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQ 408 (1219)
Q Consensus 329 ~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~ 408 (1219)
..| ++....+++..+....+..-.. ..+++.+...+....+.|..+++.++..+...
T Consensus 205 ------------~~~-~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~-------- 261 (526)
T PF01602_consen 205 ------------DPW-LQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS-------- 261 (526)
T ss_dssp ------------SHH-HHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS--------
T ss_pred ------------chH-HHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc--------
Confidence 125 3445555555544433332210 34555555556677888988888877755211
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhc-CCCCcchhH
Q 000934 409 IDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN-DKSSTSNLK 487 (1219)
Q Consensus 409 ~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~-d~~~~~~~~ 487 (1219)
...+..+++.+.+.+.++++.+| ..++..+..++...+..+. +... .+ ..+. +. +..+|
T Consensus 262 ------------~~~~~~~~~~L~~lL~s~~~nvr-~~~L~~L~~l~~~~~~~v~-~~~~---~~-~~l~~~~--d~~Ir 321 (526)
T PF01602_consen 262 ------------PELLQKAINPLIKLLSSSDPNVR-YIALDSLSQLAQSNPPAVF-NQSL---IL-FFLLYDD--DPSIR 321 (526)
T ss_dssp ------------HHHHHHHHHHHHHHHTSSSHHHH-HHHHHHHHHHCCHCHHHHG-THHH---HH-HHHHCSS--SHHHH
T ss_pred ------------hHHHHhhHHHHHHHhhcccchhe-hhHHHHHHHhhcccchhhh-hhhh---hh-heecCCC--ChhHH
Confidence 11456777888888888888899 8888888888876533333 1111 12 2333 32 36789
Q ss_pred HHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCC-chHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHH
Q 000934 488 IEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGER-YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIM 566 (1219)
Q Consensus 488 ~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~-~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll 566 (1219)
..++..+..++.. ..+..+++.+...+.+. +..++.+++..++.++....+ ....++ +.++
T Consensus 322 ~~~l~lL~~l~~~-------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~-------~~~~~v----~~l~ 383 (526)
T PF01602_consen 322 KKALDLLYKLANE-------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP-------DAEWYV----DTLL 383 (526)
T ss_dssp HHHHHHHHHH--H-------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS-------SHHHHH----HHHH
T ss_pred HHHHHHHhhcccc-------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc-------hHHHHH----HHHH
Confidence 9999998888653 23566888888888443 667889999999999876522 233344 4444
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhc---CCchHHHHHHHHHHHhcCCCCCchhHHHHH
Q 000934 567 SRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMG---NEITRLTAVKAFAVIAASPLHIDLTCVLEH 643 (1219)
Q Consensus 567 ~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~---~e~~r~~a~~al~~i~~s~~~~~~~~~l~~ 643 (1219)
+.+... ...+...++..+..++....+ ....++..+.+.+. ++..+..+++.+|+-+..... .. ....
T Consensus 384 ~ll~~~--~~~~~~~~~~~i~~ll~~~~~----~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~--~~-~~~~ 454 (526)
T PF01602_consen 384 KLLEIS--GDYVSNEIINVIRDLLSNNPE----LREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN--TE-SAPD 454 (526)
T ss_dssp HHHHCT--GGGCHCHHHHHHHHHHHHSTT----THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT--TT-HHHH
T ss_pred Hhhhhc--cccccchHHHHHHHHhhcChh----hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc--cc-cHHH
Confidence 444432 345677788888888766432 22344555555543 344677888899887632100 11 4556
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcC--CCChhhhHHHHHHHHHH
Q 000934 644 VIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLIS--DSDLHMTALALELCCTL 712 (1219)
Q Consensus 644 ~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~--~~d~~~~~~al~~l~~l 712 (1219)
++..+.......+..+|...+.++..+....+.. +..+.++..+....+ +.|..+++-|.+.++-+
T Consensus 455 ~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~---~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 455 ILRSLIENFIEESPEVKLQILTALAKLFKRNPEN---EVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST---THHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch---hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 6666666666677889999999999999876531 223467777777776 66888888777766543
No 27
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=2.4e-09 Score=118.91 Aligned_cols=390 Identities=16% Similarity=0.213 Sum_probs=266.4
Q ss_pred hhhcCChHHHHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhh
Q 000934 177 PQLSANQASVRKKSVSCIASLASSLSD----DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDT 252 (1219)
Q Consensus 177 ~~l~~~~~~vrk~a~~~l~~l~~~~~~----~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~i 252 (1219)
..+.|.--.-||.|..-+..++.-+-. +.+..++..+...+-.+.. ...|++.+-.+.+.+-+.|.+-.+|+..+
T Consensus 7 r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~-~n~rkGgLiGlAA~~iaLg~~~~~Y~~~i 85 (675)
T KOG0212|consen 7 RGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPH-ANMRKGGLIGLAAVAIALGIKDAGYLEKI 85 (675)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcc-cccccchHHHHHHHHHHhccccHHHHHHh
Confidence 345554456788888888777754321 1356667766665544332 24667888888888888888778899999
Q ss_pred HHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhcc
Q 000934 253 VPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESA 332 (1219)
Q Consensus 253 ip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~ 332 (1219)
+|.++.+++ |.|..+|-+|.+++-.++..+..++-+|.+.|+.++.+... |+.
T Consensus 86 v~Pv~~cf~---D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsa-Dsd----------------------- 138 (675)
T KOG0212|consen 86 VPPVLNCFS---DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSA-DSD----------------------- 138 (675)
T ss_pred hHHHHHhcc---CccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhc-CCc-----------------------
Confidence 999999998 67889999999999999999999999999999999888764 110
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHhcCc-hhh-HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccC
Q 000934 333 NEYTDDEDASWKVRRAAAKCLAALIVSRP-EML-SKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQID 410 (1219)
Q Consensus 333 ~~~~dddD~swkVR~~Aa~~l~~li~~~~-~~l-~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~ 410 (1219)
..| +.+++++..++..-. +.- ...++.++|.|-.|+...++.+|.-++.-+..+ ...
T Consensus 139 ----------~~V-~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~L-ds~--------- 197 (675)
T KOG0212|consen 139 ----------QNV-RGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVL-DSV--------- 197 (675)
T ss_pred ----------ccc-ccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hcC---------
Confidence 011 135667777766532 111 224677889998888888899998766544433 322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhc---chhhhhhhhhhhHhHHHhhcCCCCcchhH
Q 000934 411 NNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVL---PDCLADHIGSLIPGIEKSLNDKSSTSNLK 487 (1219)
Q Consensus 411 ~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~---~~~l~~~~~~l~~~l~~~l~d~~~~~~~~ 487 (1219)
|--.+-.++|.+++.+.+.|.|.+..+| .-|-.+++++.... |..+ ..+..++.+..-+..++ +.++
T Consensus 198 -----P~~~m~~yl~~~ldGLf~~LsD~s~eVr-~~~~t~l~~fL~eI~s~P~s~--d~~~~i~vlv~~l~ss~--~~iq 267 (675)
T KOG0212|consen 198 -----PDLEMISYLPSLLDGLFNMLSDSSDEVR-TLTDTLLSEFLAEIRSSPSSM--DYDDMINVLVPHLQSSE--PEIQ 267 (675)
T ss_pred -----CcHHHHhcchHHHHHHHHHhcCCcHHHH-HHHHHHHHHHHHHHhcCcccc--CcccchhhccccccCCc--HHHH
Confidence 3235678999999999999999999888 77666666654433 3322 44555665555555443 5678
Q ss_pred HHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchH-HHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHH
Q 000934 488 IEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYK-VTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIM 566 (1219)
Q Consensus 488 ~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~-v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll 566 (1219)
..|+.-+..++... +..+-+|+..++..++.++.|.... +...+..+-+.+.+-+...+. +++ --+.++++.+.
T Consensus 268 ~~al~Wi~efV~i~-g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~--~~~--id~~~ii~vl~ 342 (675)
T KOG0212|consen 268 LKALTWIQEFVKIP-GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERL--KEE--IDYGSIIEVLT 342 (675)
T ss_pred HHHHHHHHHHhcCC-CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhh--ccc--cchHHHHHHHH
Confidence 78899999998874 5678899999999999999887653 444444444444443332211 111 12345666555
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCC--chHHHHHHHHHHHhcCC
Q 000934 567 SRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE--ITRLTAVKAFAVIAASP 632 (1219)
Q Consensus 567 ~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e--~~r~~a~~al~~i~~s~ 632 (1219)
..+. +..-+-|-.++.-+-.+..+.+..+..+...+++.|+..|.+. .+-.-++..+..|+.++
T Consensus 343 ~~l~--~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 343 KYLS--DDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred HHhh--cchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 5554 2234556666666666666667777778889999999988764 34566788888888665
No 28
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=4.1e-07 Score=110.61 Aligned_cols=631 Identities=16% Similarity=0.177 Sum_probs=352.6
Q ss_pred hcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccch--------hhHHHHHHHHHHhhhcChhhHHH
Q 000934 13 ITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGD--------VSGLAVKCLAPLVKKVSEPRVVE 84 (1219)
Q Consensus 13 ~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~e--------Vq~~A~k~l~~l~~~~~~~~~~~ 84 (1219)
|...+.-++--++.-|...+++..-.++.....+++..+...--+.|.. |-+-|..|+..+=....-..++.
T Consensus 233 ~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~ 312 (1176)
T KOG1248|consen 233 TTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPR 312 (1176)
T ss_pred cccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhh
Confidence 4556666666677777766666444455556666666665544444422 22333344443322222234455
Q ss_pred HHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhh
Q 000934 85 MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM 164 (1219)
Q Consensus 85 l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l 164 (1219)
+.+..++...++.++.-..+...++.++.+... +...+|...+-.+ +.-. -..+-..++.++..+.+.+|+..
T Consensus 313 ~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~--~~~~~c~~~~~~~---l~~k--f~~~~~~ilqi~s~~fek~G~~s 385 (1176)
T KOG1248|consen 313 LFSLFFTILESLIEELVQAASQSLKEILKESVT--VIDALCSKQLHSL---LDYK--FHAVWRFILQILSALFEKCGELS 385 (1176)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc--ccHHHHHHHHHHH---Hcch--HHHHHHHHHHHHHHHHHHhhhhc
Confidence 566666655566667667788888888877653 3333444422222 2211 24566678889999999999966
Q ss_pred hHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhh
Q 000934 165 SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR 244 (1219)
Q Consensus 165 ~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~ 244 (1219)
.++....++.+...-.+++..-+-.-=.|+|+.+..+|++.+=.++|-=+ .+...+..|.=.+=.+-.-. .+.+
T Consensus 386 ~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl----~~~s~~~~RsWLLPvLR~~i--~~A~ 459 (1176)
T KOG1248|consen 386 GPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL----HAESLSFTRSWLLPVLRDYI--IGAS 459 (1176)
T ss_pred CHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc----cccccccchhHhHHHHHHhh--ccCc
Confidence 67766666666554444444344455678888888888886555555433 11111112211111111111 1233
Q ss_pred hccchhhhHHHHHHhhhcc---CCCCh---HHHHHHHHHHHHHHHhC--chhhcccHHHHHHHHHHhcccCCCCCCCCCC
Q 000934 245 FGPHLGDTVPVLIDYCTSA---SENDE---ELREYSLQALESFLLRC--PRDISSYCDEILHLTLEYLSYDPNFTDNMEE 316 (1219)
Q Consensus 245 ~~~~l~~iip~ll~~~~~~---~~~d~---elre~al~~l~~l~~~~--~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~ 316 (1219)
++-|...++|...+..... .+... .++..+.+-|+.+-..| |.+...-+..+.+.+...+.|.|
T Consensus 460 La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~-------- 531 (1176)
T KOG1248|consen 460 LAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRP-------- 531 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcch--------
Confidence 4445555555554432210 01111 22333334444433333 44555556666676666665432
Q ss_pred CcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcC-c--------hhhHHHHHHHHHHHHhhhcccchhHH
Q 000934 317 DSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR-P--------EMLSKLYEEACPKLIDRFKEREENVK 387 (1219)
Q Consensus 317 d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~-~--------~~l~~~~~~i~p~Li~~~~d~~~~Vr 387 (1219)
..|..-|..|..++... | +.+...-...+|.+...+......-|
T Consensus 532 ---------------------------elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~ 584 (1176)
T KOG1248|consen 532 ---------------------------ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR 584 (1176)
T ss_pred ---------------------------HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc
Confidence 35888888888888774 1 23334455667777766644332222
Q ss_pred HHHHHHHHHHHHHhcc-cCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhh
Q 000934 388 MDVFNTFIELVRQTGN-VTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHI 466 (1219)
Q Consensus 388 ~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~ 466 (1219)
.+..+-...+..+.. +- ...| .+....+...+.....+.+..++.+..+++|..++...+..=...+
T Consensus 585 -~~l~~~~~~L~~i~~~~~-------~~t~----~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~v 652 (1176)
T KOG1248|consen 585 -KILASRSTVLEIIRVDYF-------TVTP----TDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQV 652 (1176)
T ss_pred -ccHHHHHHHHHHHHHHHh-------hccc----HHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhH
Confidence 222222222222110 00 0001 1112222333333333332222223444455444332221111233
Q ss_pred hhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCc-hhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 000934 467 GSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVF-HPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRP 545 (1219)
Q Consensus 467 ~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~-~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~ 545 (1219)
..+. .+...... +....++..+..+|..++..-+.+.+ ..++..|...+...+++...-.+..++.|+..+++.+.
T Consensus 653 s~l~-~v~~~~e~-~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~- 729 (1176)
T KOG1248|consen 653 SKLF-TVDPEFEN-SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS- 729 (1176)
T ss_pred HHHH-HhhHHhhc-cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-
Confidence 3333 22222222 22356888899999999876222222 34677777777777777666788899999999998752
Q ss_pred CccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH--Hhh---cc-cccchhhhHHHHHHHhhcCCchHH
Q 000934 546 SVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVI--STF---GD-NLGAELPACLPVLVDRMGNEITRL 619 (1219)
Q Consensus 546 ~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~--~~~---g~-~l~~~~~~~l~~L~~~L~~e~~r~ 619 (1219)
.++..++..+++.++=.+ ++.+..-|+.|..|+-.+. ... |. .-...+...++++...+-++.++.
T Consensus 730 ------~e~~~~i~k~I~EvIL~~--Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~ 801 (1176)
T KOG1248|consen 730 ------AEHCDLIPKLIPEVILSL--KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRV 801 (1176)
T ss_pred ------HHHHHHHHHHHHHHHHhc--ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHH
Confidence 245566666666554333 4555666888877776665 222 22 112267888888888888888776
Q ss_pred HH--HHHHHHHh-cCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCC
Q 000934 620 TA--VKAFAVIA-ASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISD 696 (1219)
Q Consensus 620 ~a--~~al~~i~-~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~ 696 (1219)
.+ +-+++.+. ... ..--.++++.++..+..+|..+.|..+.+|+..+..++...+..+-...++.+|+.+..+..+
T Consensus 802 ~as~Ivai~~il~e~~-~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d 880 (1176)
T KOG1248|consen 802 VASDIVAITHILQEFK-NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHD 880 (1176)
T ss_pred HHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHh
Confidence 55 45555555 221 111178899999999999999999999999999999998876544344577888888887777
Q ss_pred CChhhhHHHHHHHHHHhhc
Q 000934 697 SDLHMTALALELCCTLMAD 715 (1219)
Q Consensus 697 ~d~~~~~~al~~l~~l~~~ 715 (1219)
...+++-..-.++-.+++.
T Consensus 881 ~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 881 HKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 6777777777777778775
No 29
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.4e-07 Score=113.08 Aligned_cols=480 Identities=16% Similarity=0.196 Sum_probs=270.9
Q ss_pred HhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhh
Q 000934 166 NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRF 245 (1219)
Q Consensus 166 ~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 245 (1219)
...+.+++.++..++|.+..||=.|++.+|.+...++..+.++++..++. +..+..++..=.+++-+++.+++.. --+
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid-~~~p~e~~~aWHgacLaLAELA~rG-lLl 414 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVID-LFNPAEDDSAWHGACLALAELALRG-LLL 414 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHH-hcCcCCchhHHHHHHHHHHHHHhcC-Ccc
Confidence 34567888899999999999999999999999999998888888888888 4444332344457888888888742 333
Q ss_pred ccchhhhHHHHHHhhhccC-----CCChHHHHHHHHHHHHHHHhC-chhhcccHHHHHHHHHHhcccCCCCCCCCCCCcc
Q 000934 246 GPHLGDTVPVLIDYCTSAS-----ENDEELREYSLQALESFLLRC-PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSD 319 (1219)
Q Consensus 246 ~~~l~~iip~ll~~~~~~~-----~~d~elre~al~~l~~l~~~~-~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~ 319 (1219)
..-+..|+|.+++.+.-++ .-..-+|++|.-.+-+|.+.+ |.++.|++..+...++...-+||.
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDre---------- 484 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDRE---------- 484 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCch----------
Confidence 4457899999998886421 122459999988888888754 678999999999988877666653
Q ss_pred cccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchh---hH-----HH-------------------HHHHH
Q 000934 320 DEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEM---LS-----KL-------------------YEEAC 372 (1219)
Q Consensus 320 ~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~---l~-----~~-------------------~~~i~ 372 (1219)
-.+||+|+.++-..+..+++. ++ ++ |+...
T Consensus 485 -----------------------vncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~ 541 (1133)
T KOG1943|consen 485 -----------------------VNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYR 541 (1133)
T ss_pred -----------------------hhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHH
Confidence 257888888887777664321 00 00 11111
Q ss_pred HHHHhh-----hcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHH-HHHHHHHHHHHHHhcccCccchhhH
Q 000934 373 PKLIDR-----FKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLK-QEVSKIVKSINRQLREKSIKTKQVG 446 (1219)
Q Consensus 373 p~Li~~-----~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~-~~~p~lv~~l~~~L~~~~~~~r~~~ 446 (1219)
..+++. +..=++.+|.-+..++..+.... | +.+. .++|++++.+. .++...| ++
T Consensus 542 ~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~--------------p-k~~a~~~L~~lld~~l----s~~~~~r-~g 601 (1133)
T KOG1943|consen 542 EPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE--------------P-KYLADYVLPPLLDSTL----SKDASMR-HG 601 (1133)
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh--------------H-Hhhcccchhhhhhhhc----CCChHHh-hh
Confidence 111111 11222344544555555543221 2 1233 24566655432 3455677 88
Q ss_pred HHHHHHHHHHhcch---h---h-hh---hhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhh-hhhhHH
Q 000934 447 AFSVLRELVVVLPD---C---L-AD---HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPY-IKALSS 515 (1219)
Q Consensus 447 ~~~~L~~L~~~~~~---~---l-~~---~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~-l~~i~p 515 (1219)
++-..++++..... . + +. .+.+++|.+...--.+..+.-++...+.++..+..++. ..+..+ ....-.
T Consensus 602 ~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~-~~~~~~v~e~~~~ 680 (1133)
T KOG1943|consen 602 VFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKD-RLFQDFVIENWQM 680 (1133)
T ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHH
Confidence 77777776644211 0 1 11 12234444443322222112355666777777755542 233332 222333
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccH-HHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhc
Q 000934 516 PVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYV-QPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFG 594 (1219)
Q Consensus 516 ~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l-~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g 594 (1219)
.+.+.+.++. .++..|...+++++...--. .++. .++....++.+.+. .+..+|..-+.++|.+-..
T Consensus 681 ll~~~l~~~n-~i~~~av~av~~l~s~y~~~--------d~~~~~~li~~~ls~~~~~-~~~~~r~g~~lal~~lp~~-- 748 (1133)
T KOG1943|consen 681 LLAQNLTLPN-QIRDAAVSAVSDLVSTYVKA--------DEGEEAPLITRYLSRLTKC-SEERIRRGLILALGVLPSE-- 748 (1133)
T ss_pred HHHHhhcchH-HHHHHHHHHHHHHHHHHHhc--------CchhhhHHHHHHHHHhcCc-hHHHHHHHHHHHHccCcHH--
Confidence 3333443444 68889999999998753211 1111 14555566665432 1344555555555543211
Q ss_pred ccccchhhh-HHHHHHHhhc---CCchHHHHHHHHHHHhcCC----CCCchhHHHHHHHHHHHHHHHHh----hhHHHHH
Q 000934 595 DNLGAELPA-CLPVLVDRMG---NEITRLTAVKAFAVIAASP----LHIDLTCVLEHVIAELTAFLRKA----NRALRQA 662 (1219)
Q Consensus 595 ~~l~~~~~~-~l~~L~~~L~---~e~~r~~a~~al~~i~~s~----~~~~~~~~l~~~l~~L~~~L~~~----~~~lr~~ 662 (1219)
.+.-.+++ +...+++... ....|...+.++..+.... ....+.++...++..+..|..++ .+-+|.+
T Consensus 749 -~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVRea 827 (1133)
T KOG1943|consen 749 -LIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREA 827 (1133)
T ss_pred -hhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHH
Confidence 11112222 2222222211 2235777788877765211 12234556666666666655433 3569999
Q ss_pred HHHHHHHHHHHhCC--CCCcchHHHHHHHHhhhcCCCChhhhHHHHHHHHHHhh
Q 000934 663 TLGTMNSLVVAYGD--KIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMA 714 (1219)
Q Consensus 663 al~~L~~l~~~~~~--~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~~ 714 (1219)
|+.++..+.....+ -++++.+..++.-+.+--.+.-..+++.+..++.+++-
T Consensus 828 Am~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~ 881 (1133)
T KOG1943|consen 828 AMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVV 881 (1133)
T ss_pred HHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceee
Confidence 99999988765542 25555555555433222222222347777777777765
No 30
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.28 E-value=2.2e-08 Score=120.72 Aligned_cols=542 Identities=16% Similarity=0.190 Sum_probs=323.3
Q ss_pred HHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhh
Q 000934 82 VVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1219)
Q Consensus 82 ~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g 161 (1219)
..++++.+.... ....++...++..++.++...+ +..+...+.|.+....... ...||..+++.+..++....
T Consensus 119 r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~----~~~~~~~ll~~le~l~~~e--et~vr~k~ve~l~~v~~~~~ 191 (759)
T KOG0211|consen 119 RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG----GPEYAHMLLPPLELLATVE--ETGVREKAVESLLKVAVGLP 191 (759)
T ss_pred hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc----chhHHHHhhHHHHhhhHHH--HHHHHHHHHHHHHHHHHhcC
Confidence 457777777766 5556667777777776664432 2345566777776655544 47789999998888876655
Q ss_pred hhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh
Q 000934 162 NLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV 241 (1219)
Q Consensus 162 ~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~ 241 (1219)
..-. +..+.+.+...-.++...-|-.++..++......+++.+..=...+.+.+-+... +.+|+++.+-+|.++...
T Consensus 192 ~~~~--~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~ 268 (759)
T KOG0211|consen 192 KEKL--REHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVL 268 (759)
T ss_pred hHHH--HHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHH
Confidence 4322 2333333333222322256777888888888888865444434444444433332 478889999999999988
Q ss_pred hhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccc
Q 000934 242 GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDE 321 (1219)
Q Consensus 242 ~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~ 321 (1219)
+.. ---..++|...+... |+.+.+|+.|..++..+........ +....+.+.
T Consensus 269 ~~~--~~~s~v~~~~~~L~~---DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~---------------------- 320 (759)
T KOG0211|consen 269 ESE--IVKSEVLPTLIQLLR---DDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTES---------------------- 320 (759)
T ss_pred HHH--HHHhhccHHHhhhhh---cchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHH----------------------
Confidence 752 122445666666555 5778899999888877655433111 001111111
Q ss_pred cccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHh
Q 000934 322 AYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQT 401 (1219)
Q Consensus 322 ~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~ 401 (1219)
-..+.+|.+|.+|...++....+....+.. .......|.....+++.++++|.++..-...+....
T Consensus 321 ------------l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~--~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 321 ------------LVQAVEDGSWRVSYMVADKFSELSSAVGPS--ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred ------------HHHHhcChhHHHHHHHhhhhhhHHHHhccc--cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence 112345788999999887777666554321 111122333444568888999987765444443321
Q ss_pred cccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCC
Q 000934 402 GNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKS 481 (1219)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~ 481 (1219)
.. .+. ..-....+++.+.....+.+..+| .+.......+....| ...-+..+.|.....++|..
T Consensus 387 ~~-----------~~~--~~i~~~~ilp~~~~lv~d~~~~vr-~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~ 450 (759)
T KOG0211|consen 387 NA-----------SCY--PNIPDSSILPEVQVLVLDNALHVR-SALASVITGLSPILP--KERTISELLPLLIGNLKDED 450 (759)
T ss_pred Cc-----------ccc--cccchhhhhHHHHHHHhcccchHH-HHHhccccccCccCC--cCcCccccChhhhhhcchhh
Confidence 10 000 011123345666666667777676 433322222222222 34467777888877777653
Q ss_pred CcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHH
Q 000934 482 STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPI 561 (1219)
Q Consensus 482 ~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l 561 (1219)
..++......+..+....+.....-+.+..+|.+.....|..++++.+.+..+-.++...+ ..++.+-
T Consensus 451 --~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~----------~~~~~~~ 518 (759)
T KOG0211|consen 451 --PIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG----------VEFFDEK 518 (759)
T ss_pred --HHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh----------hHHhhHH
Confidence 5666665555555544444455666788999999998888888999888888877776542 2233333
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcC--CchHHHHHHHHHHHhcCCCCCchhH
Q 000934 562 YNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGN--EITRLTAVKAFAVIAASPLHIDLTC 639 (1219)
Q Consensus 562 ~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~--e~~r~~a~~al~~i~~s~~~~~~~~ 639 (1219)
+..++... ..|...++|++|.+.+..++..+|... ......+.++....+ =-.|.+.+.++..++.--.. +-
T Consensus 519 ~~~l~~~~-l~d~v~~Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~---ei 592 (759)
T KOG0211|consen 519 LAELLRTW-LPDHVYSIREAAARNLPALVETFGSEW--ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ---EI 592 (759)
T ss_pred HHHHHHhh-hhhhHHHHHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc---HH
Confidence 33322221 234468999999999999999998422 445556655554433 23577777777766632111 33
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHH-HHHHhhhcCCCChhhhHHHHHHHHHHh
Q 000934 640 VLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVI-IVELSTLISDSDLHMTALALELCCTLM 713 (1219)
Q Consensus 640 ~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~i-l~~l~~~l~~~d~~~~~~al~~l~~l~ 713 (1219)
+...++|.+..+.......+|-.++..|..+...... ...+.. .+.+..+.+++|...+-.+..+++.+.
T Consensus 593 ~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 593 TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE----SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 4466777777777788888999999999988765443 333333 333333445667776666666655543
No 31
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1e-06 Score=102.59 Aligned_cols=604 Identities=14% Similarity=0.160 Sum_probs=297.9
Q ss_pred CCcchhhhhHHHHHHHhccccC-------CCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHH
Q 000934 16 KDKDFRYMATSDLLNELNKESF-------KADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDK 88 (1219)
Q Consensus 16 ~d~d~R~mAl~dL~~~l~~~~~-------~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~ 88 (1219)
.|+..|-.|.--++|.+++.|. ++.+...+.+...++.+.-.....+|.+=...++-+.+.=-++.|+.+++.
T Consensus 51 ~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~d 130 (960)
T KOG1992|consen 51 QDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPD 130 (960)
T ss_pred cChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 3777888888888888876542 333344555666666666666677888888888888777677889999999
Q ss_pred HHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhH
Q 000934 89 LCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDH 168 (1219)
Q Consensus 89 L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~ 168 (1219)
|++.+.+++-.+. .+..+. +.++.++- ..+-|.+++ ..++..+.+..-.+.
T Consensus 131 L~~~ls~~D~~~~-~gVL~t------------ahsiFkr~-------------R~efrSdaL--~~EIK~vLd~f~~Pl- 181 (960)
T KOG1992|consen 131 LVARLSSGDFNVI-NGVLVT------------AHSIFKRY-------------RPEFRSDAL--WLEIKLVLDRFAEPL- 181 (960)
T ss_pred HHhhccccchHHH-HHHHHH------------HHHHHHhc-------------CcccccHHH--HHHHHHHHHhhHhHH-
Confidence 9888764432110 111110 01111110 111222222 122222211111010
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH-HHHhhhhhcc
Q 000934 169 ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGAL-SRAVGYRFGP 247 (1219)
Q Consensus 169 ~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l-~~~~~~~~~~ 247 (1219)
..+....+...+.... ....++.+...+ ...+..+-++ +.-.|..|..
T Consensus 182 t~Lf~~t~~l~~~~~~-----------------~~~~l~~lf~vl--------------ll~~klfysLn~QDiPEFFEd 230 (960)
T KOG1992|consen 182 TDLFRKTMELIQRHAN-----------------DAAALNILFGVL--------------LLICKLFYSLNFQDIPEFFED 230 (960)
T ss_pred HHHHHHHHHHHhhccc-----------------chhHHHHHHHHH--------------HHHHHHHHhhhcccchHHHHh
Confidence 1111111111100000 000011111100 0111122222 1235778888
Q ss_pred chhhhHHHHHHhhhccC------CCC----hHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcc---cCCCC----
Q 000934 248 HLGDTVPVLIDYCTSAS------END----EELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLS---YDPNF---- 310 (1219)
Q Consensus 248 ~l~~iip~ll~~~~~~~------~~d----~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~---~dpn~---- 310 (1219)
|+++-|+...++++.+. +++ +++|....+-++-.+.+++++|.||+++.+.+....+. -||.|
T Consensus 231 nm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lv 310 (960)
T KOG1992|consen 231 NMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLV 310 (960)
T ss_pred hHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHH
Confidence 99999999998887431 111 23666667777778899999999999999876555442 23222
Q ss_pred ----------------CCC-CCCC-----cc-----c----ccc-cccchhhccCCCC----CCCcccHHHHHHHHHHHH
Q 000934 311 ----------------TDN-MEED-----SD-----D----EAY-EEEEEDESANEYT----DDEDASWKVRRAAAKCLA 354 (1219)
Q Consensus 311 ----------------~~~-~d~d-----~~-----~----~~~-~~~~d~~~~~~~~----dddD~swkVR~~Aa~~l~ 354 (1219)
.+- ..+. .+ . .+| +=|||+. .+|. +..|.. .-||+|+.+++
T Consensus 311 s~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~p--leYiRRDlEGsDvd-TRRR~a~dlvr 387 (960)
T KOG1992|consen 311 SKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNP--LEYIRRDLEGSDVD-TRRRAAIDLVR 387 (960)
T ss_pred HHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCH--HHHHHHhcccCCcc-hhHHHHHHHHH
Confidence 100 0000 00 0 001 0011111 0111 001111 35899999999
Q ss_pred HHHhcCchhhHHHHHHHHHHHHhhhcc-c--chhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHH
Q 000934 355 ALIVSRPEMLSKLYEEACPKLIDRFKE-R--EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSI 431 (1219)
Q Consensus 355 ~li~~~~~~l~~~~~~i~p~Li~~~~d-~--~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l 431 (1219)
.|...+-.....++...+..+++.+.. + +|.-+..++..+.++..
T Consensus 388 gL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talai-------------------------------- 435 (960)
T KOG1992|consen 388 GLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAI-------------------------------- 435 (960)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHh--------------------------------
Confidence 998877544444555444444443321 1 12111111111111110
Q ss_pred HHHhcccCccchhhHHHHHHHHHHHhcchhhhh-hhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhh
Q 000934 432 NRQLREKSIKTKQVGAFSVLRELVVVLPDCLAD-HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYI 510 (1219)
Q Consensus 432 ~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~-~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l 510 (1219)
+....+ .++. .-..++. +.+ +...+.|-+.+. +-+..+-+|.+++.++-.+ +++ .-.+++
T Consensus 436 ------k~~t~~-~Gvt-stn~lvd-----v~~Ff~~~ilp~L~s~--~vn~~pilka~aIKy~~~F-R~q---l~~~~l 496 (960)
T KOG1992|consen 436 ------KGQTAK-HGVT-STNELVD-----VVDFFANQILPDLLSP--NVNEFPILKADAIKYIYTF-RNQ---LGKEHL 496 (960)
T ss_pred ------hcchhh-ccee-ecccccc-----HHHHHHHHhhHHhccC--ccccccchhhcccceeeee-ccc---CChHHH
Confidence 000011 1110 0000110 112 122233333320 1112244677777665444 221 223578
Q ss_pred hhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccC---CCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Q 000934 511 KALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEG---LGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMG 587 (1219)
Q Consensus 511 ~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~---~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg 587 (1219)
-.++|.+...++...+-+-.-|-.+++.+...-.+ ..+ ..++..||+..++..+++.+...+. .--+-...|+-
T Consensus 497 m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~-~~~~if~~~~iap~~~~ll~nLf~a~s~p~~--~EneylmKaIm 573 (960)
T KOG1992|consen 497 MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN-SNAKIFGAEDIAPFVEILLTNLFKALSLPGK--AENEYLMKAIM 573 (960)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHhccccccC-ccccccchhhcchHHHHHHHHHHHhccCCcc--cccHHHHHHHH
Confidence 88999999999887777777787888877654222 111 1456788888888888876643221 11233344555
Q ss_pred HHHHhhcccccchhhhHHHHHHHh----hcCCc-hH--HHHHHHHHHHhc---CCCCCchhHHHHHHHHHHHHHHHHhhh
Q 000934 588 LVISTFGDNLGAELPACLPVLVDR----MGNEI-TR--LTAVKAFAVIAA---SPLHIDLTCVLEHVIAELTAFLRKANR 657 (1219)
Q Consensus 588 ~l~~~~g~~l~~~~~~~l~~L~~~----L~~e~-~r--~~a~~al~~i~~---s~~~~~~~~~l~~~l~~L~~~L~~~~~ 657 (1219)
.++....+...|+.+.+++.|.+. -+|.. .+ ..-..+++.+.. ...+..++.|...++|.+...++..=.
T Consensus 574 Rii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~ 653 (960)
T KOG1992|consen 574 RIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQ 653 (960)
T ss_pred HHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555556666666655543 34543 12 122444444432 111223577888889988888887767
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHH-hh-hcCCCChhhhHHHHHHHHHHhhcccCCCchhH--hHhhhhHHH
Q 000934 658 ALRQATLGTMNSLVVAYGDKIGASAYEVIIVEL-ST-LISDSDLHMTALALELCCTLMADKRSSPNVGL--AVRNKVLPQ 733 (1219)
Q Consensus 658 ~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l-~~-~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~--~~~~~~l~~ 733 (1219)
..-.-++..++.+++.+.+.+++. +..+++.+ .+ ++.. .....+....+..+++. .|+... ...+.++..
T Consensus 654 EfiPYvfQlla~lve~~~~~ip~~-~~~l~~~lLsp~lW~r--~gNipalvrLl~aflk~---g~~~~~~~~~l~~iLGi 727 (960)
T KOG1992|consen 654 EFIPYVFQLLAVLVEHSSGTIPDS-YSPLFPPLLSPNLWKR--SGNIPALVRLLQAFLKT---GSQIVEAADKLSGILGI 727 (960)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchh-HHHHHHHhcCHHHHhh--cCCcHHHHHHHHHHHhc---CchhhcccccchhHHHH
Confidence 778889999999999887755543 34444433 22 2211 11234555666666663 333222 123344444
Q ss_pred HHHHhhhcc
Q 000934 734 ALALIKSSL 742 (1219)
Q Consensus 734 l~~ll~s~~ 742 (1219)
+-+++.|+.
T Consensus 728 fqkLiaSka 736 (960)
T KOG1992|consen 728 FQKLIASKA 736 (960)
T ss_pred HHHHhcCcc
Confidence 445554443
No 32
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.1e-05 Score=96.68 Aligned_cols=377 Identities=19% Similarity=0.213 Sum_probs=219.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHhh------cCCCChHHHHHHHHHHHHHHHHhhhhhccchhh----hHHHHHH
Q 000934 189 KSVSCIASLASSLSDDLLAKATIEVVRNLR------SKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGD----TVPVLID 258 (1219)
Q Consensus 189 ~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~------~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~----iip~ll~ 258 (1219)
+|..++-.++..-+++.|+.+++.+++-+. .+..+...+.+|+.++|++++..-++ .||-+. ++++++-
T Consensus 391 Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~-s~~~~~mE~flv~hVfP 469 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK-SPYKSQMEYFLVNHVFP 469 (1010)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC-CchHHHHHHHHHHHhhH
Confidence 356666666666667778888888888876 33334467788999999999765433 443222 2333333
Q ss_pred hhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCC
Q 000934 259 YCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDD 338 (1219)
Q Consensus 259 ~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd 338 (1219)
.++ ..---+|..|.+.++.+...-.+. ...+.+++....+.+.-|
T Consensus 470 ~f~---s~~g~Lrarac~vl~~~~~~df~d-~~~l~~ale~t~~~l~~d------------------------------- 514 (1010)
T KOG1991|consen 470 EFQ---SPYGYLRARACWVLSQFSSIDFKD-PNNLSEALELTHNCLLND------------------------------- 514 (1010)
T ss_pred hhc---CchhHHHHHHHHHHHHHHhccCCC-hHHHHHHHHHHHHHhccC-------------------------------
Confidence 333 244568888888888776432211 123455666666666411
Q ss_pred CcccHHHHHHHHHHHHHHHhcCc---hhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCC
Q 000934 339 EDASWKVRRAAAKCLAALIVSRP---EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELN 415 (1219)
Q Consensus 339 dD~swkVR~~Aa~~l~~li~~~~---~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 415 (1219)
..--||--|+-+|..++...+ +.+.++...++..|++-.++-|-+.-..+ +.+++..-+. +-.
T Consensus 515 --~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v---me~iV~~fse---------Els 580 (1010)
T KOG1991|consen 515 --NELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV---MEKIVCKFSE---------ELS 580 (1010)
T ss_pred --CcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH---HHHHHHHHHH---------hhc
Confidence 112689999999999999876 44677777777777766677664443333 3333332210 011
Q ss_pred hhHHHHHHHHHHHHHHHHHhcc---cC--ccchhhHHHHHHH---HHHHhc---chhhhhhhhhhhHhHHHhhcCCCCcc
Q 000934 416 PRWLLKQEVSKIVKSINRQLRE---KS--IKTKQVGAFSVLR---ELVVVL---PDCLADHIGSLIPGIEKSLNDKSSTS 484 (1219)
Q Consensus 416 ~~~~L~~~~p~lv~~l~~~L~~---~~--~~~r~~~~~~~L~---~L~~~~---~~~l~~~~~~l~~~l~~~l~d~~~~~ 484 (1219)
|.+ .+....+.....+.+.+ .+ ...++.+|+.+|+ ++..+. |.-+...-+.+.|.+..+++..- .
T Consensus 581 PfA--~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i--~ 656 (1010)
T KOG1991|consen 581 PFA--VELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDI--T 656 (1010)
T ss_pred hhH--HHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh--H
Confidence 221 22334445555555553 11 1222244444444 444332 33333444455666666665422 4
Q ss_pred hhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHH
Q 000934 485 NLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNA 564 (1219)
Q Consensus 485 ~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 564 (1219)
.+..+++.++..+.- + ...+.|-+=.+++.+..++.+....-..+..-.+.+++..-++. -..-..|.+.++..
T Consensus 657 dfyeE~~ei~~~~t~-~-~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~----~~s~~~y~~il~~i 730 (1010)
T KOG1991|consen 657 DFYEELLEIVSSLTF-L-SKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPS----LLSNPDYLQILLEI 730 (1010)
T ss_pred HHHHHHHHHHhhhhh-h-hcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchh----hhccchHHHHHHHH
Confidence 556666666554421 1 12355656677888888887764444455556666666543331 12233567777777
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCC----chHHHHHHHH
Q 000934 565 IMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE----ITRLTAVKAF 625 (1219)
Q Consensus 565 ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e----~~r~~a~~al 625 (1219)
+-..+.+.+....-.+.|..-+..++-++++.+.++++..+...+.+++.+ ..|..+++++
T Consensus 731 ~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVv 795 (1010)
T KOG1991|consen 731 IKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVV 795 (1010)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 777776655444556788888999999988777777888788777887653 2355555544
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=99.26 E-value=5e-07 Score=110.67 Aligned_cols=283 Identities=11% Similarity=0.148 Sum_probs=174.8
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHH
Q 000934 370 EACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFS 449 (1219)
Q Consensus 370 ~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~ 449 (1219)
.++..+..+++.++..|..++++++..+..... + ......+..+.+.+... ..+++.++ ..++.
T Consensus 256 ~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~-------------~-~~~~~~~~rl~~pLv~L-~ss~~eiq-yvaLr 319 (746)
T PTZ00429 256 TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS-------------Q-ELIERCTVRVNTALLTL-SRRDAETQ-YIVCK 319 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC-------------H-HHHHHHHHHHHHHHHHh-hCCCccHH-HHHHH
Confidence 344445556678889999999888777643210 1 12222222333334333 34556688 88888
Q ss_pred HHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHH
Q 000934 450 VLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVT 529 (1219)
Q Consensus 450 ~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~ 529 (1219)
-+..++...|..|.+++..+. -..+|+ ..+|...+..+..++... .+..|+..+...+.+.+..++
T Consensus 320 ~I~~i~~~~P~lf~~~~~~Ff----~~~~Dp---~yIK~~KLeIL~~Lane~-------Nv~~IL~EL~eYa~d~D~ef~ 385 (746)
T PTZ00429 320 NIHALLVIFPNLLRTNLDSFY----VRYSDP---PFVKLEKLRLLLKLVTPS-------VAPEILKELAEYASGVDMVFV 385 (746)
T ss_pred HHHHHHHHCHHHHHHHHHhhh----cccCCc---HHHHHHHHHHHHHHcCcc-------cHHHHHHHHHHHhhcCCHHHH
Confidence 888888877777766644332 233443 468888999988886532 256677888888888888999
Q ss_pred HHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHH
Q 000934 530 AEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLV 609 (1219)
Q Consensus 530 ~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~ 609 (1219)
.+++.+++.++..+ ......++..+++.+... .++...++.++..++...... .+++.++
T Consensus 386 r~aIrAIg~lA~k~-----------~~~a~~cV~~Ll~ll~~~---~~~v~e~i~vik~IlrkyP~~------~il~~L~ 445 (746)
T PTZ00429 386 VEVVRAIASLAIKV-----------DSVAPDCANLLLQIVDRR---PELLPQVVTAAKDIVRKYPEL------LMLDTLV 445 (746)
T ss_pred HHHHHHHHHHHHhC-----------hHHHHHHHHHHHHHhcCC---chhHHHHHHHHHHHHHHCccH------HHHHHHH
Confidence 99999999997543 344566666666666432 234556788888887765431 1344444
Q ss_pred H-----hhcCCchHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHH
Q 000934 610 D-----RMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYE 684 (1219)
Q Consensus 610 ~-----~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~ 684 (1219)
+ .+.+...|.+.++.+|..+.. -+..+.++..+..-....+..+|.+.+.+...+....+. ..+
T Consensus 446 ~~~~~~~i~e~~AKaaiiWILGEy~~~------I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~-----~~~ 514 (746)
T PTZ00429 446 TDYGADEVVEEEAKVSLLWMLGEYCDF------IENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ-----GME 514 (746)
T ss_pred HhhcccccccHHHHHHHHHHHHhhHhh------HhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH-----HHH
Confidence 3 234445677779999986532 111233333333322346678999999999998877653 234
Q ss_pred HHHHHHhhhc-C-CCChhhhHHHHHHHHHHh
Q 000934 685 VIIVELSTLI-S-DSDLHMTALALELCCTLM 713 (1219)
Q Consensus 685 ~il~~l~~~l-~-~~d~~~~~~al~~l~~l~ 713 (1219)
..+..+.... + +.|+.++.-|+..+.-+.
T Consensus 515 ~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs 545 (746)
T PTZ00429 515 PQLNRVLETVTTHSDDPDVRDRAFAYWRLLS 545 (746)
T ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHc
Confidence 4444444333 3 457778888877766553
No 34
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.24 E-value=6.1e-06 Score=102.33 Aligned_cols=661 Identities=15% Similarity=0.179 Sum_probs=348.1
Q ss_pred hHHHHHHHHHhcC--CCcchhhhh---HHHHHHHhccccCCCChHHHHHHHHHHHHhccCcc--chhhHHHHHHHHHHhh
Q 000934 3 NLQMAAILEKITG--KDKDFRYMA---TSDLLNELNKESFKADADLEVKLSNIVVQQLDDVA--GDVSGLAVKCLAPLVK 75 (1219)
Q Consensus 3 ~~~l~~ll~~~~~--~d~d~R~mA---l~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~--~eVq~~A~k~l~~l~~ 75 (1219)
...++.+|+|..+ .+.|||..= +.||.+.++.|..-..+..++.+...|+....+.+ ...|..+..-||.++.
T Consensus 580 ~~fl~~fL~rc~s~~~e~d~r~LfeNfvqDLLs~ln~PEWPatE~ILs~Lg~~Lv~~~s~ks~~~sir~asLdlLG~Iaa 659 (1692)
T KOG1020|consen 580 NHFLTTFLERCFSKQGEEDYRILFENFVQDLLSALNLPEWPATELILSLLGKLLVHNFSNKSVDVSIRTASLDLLGTIAA 659 (1692)
T ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHccCCcCccHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3667788888644 566899874 56777777776555555666777777777777665 4568999999999998
Q ss_pred hcChhhHHHHHHHHHHHhcCC-----CcchhhHHH----HHHHHHHhhcC---C-------hhhhHHHHHhHhHHHHHhh
Q 000934 76 KVSEPRVVEMTDKLCIKLLNG-----KDQHRDIAS----IALKTIIAEVT---T-------SSLAQSIHTSLTPQLTKGI 136 (1219)
Q Consensus 76 ~~~~~~~~~l~~~L~~~~~~~-----~~~~r~~a~----~aL~~~i~~~~---~-------~~~~~~~~~~l~p~L~~~l 136 (1219)
++....+...++. ...+. ..+...+.. ..|--.+.... . ..+...+.+.+.-.....+
T Consensus 660 rLrkd~v~s~l~~---g~v~~~~~~~s~~~~~~k~~~l~~~Lldfl~~~~~~~~~~~v~~~~fyi~~w~~d~~le~~~~~ 736 (1692)
T KOG1020|consen 660 RLRKDAVLSKLEQ---GSVDRELDQDSEEKHNIKLIVLQKTLLDFLKSNTEETALSEVYACHFYIAQWYRDTRLETILIM 736 (1692)
T ss_pred HHHHHHHHHHHhh---ccchhhhhhcccccccchhhhhHHHHHHHHHHhhhccchhhHHHhhHHHHhHHHHHHHHHHHHH
Confidence 8887766653332 11000 000001111 11111111111 0 0111222222221122222
Q ss_pred hccC--CChhHHHHHHH--HHHHHHHHhhhhhhHhHHHHHHHHhhhhcCC----------hH-HHHHHHHHHHHHHHhhC
Q 000934 137 TLKD--MNTEIRCECLD--ILCDVLHKFGNLMSNDHERLLSALLPQLSAN----------QA-SVRKKSVSCIASLASSL 201 (1219)
Q Consensus 137 ~~~~--~~~~v~~~al~--~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~----------~~-~vrk~a~~~l~~l~~~~ 201 (1219)
.... ...+-++...+ .-.+.+. ..+.-++.++..+.+. .+ .-+..|..+.-.++...
T Consensus 737 ~~~kd~~s~~~~~~~~~~el~~~~v~--------~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r 808 (1692)
T KOG1020|consen 737 EENKDVDSNEGTHHWFSFELAYEKVI--------TVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHAR 808 (1692)
T ss_pred HhccCccccccchhHHHHHHHHHHHh--------hhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhh
Confidence 1111 01111111111 1111111 1222233333333322 11 23334444444444433
Q ss_pred CHH-HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 000934 202 SDD-LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALES 280 (1219)
Q Consensus 202 ~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~ 280 (1219)
+-. .|+..+..++..+..+.. ..|..|+.|++.|+..-|.-+. -+.+-..+..-+. |....|||+|+..++.
T Consensus 809 ~f~~sfD~yLk~Il~~l~e~~i--alRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~---DssasVREAaldLvGr 881 (1692)
T KOG1020|consen 809 SFSQSFDPYLKLILSVLGENAI--ALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLN---DSSASVREAALDLVGR 881 (1692)
T ss_pred HHHHhhHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhc---cchhHHHHHHHHHHhh
Confidence 322 378899999999986654 7899999999999986653221 1444444444444 5678899999999999
Q ss_pred HHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcC
Q 000934 281 FLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR 360 (1219)
Q Consensus 281 l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~ 360 (1219)
++.+.|+.+..|.+.|...++ |++-.||+-+.+-++.+....
T Consensus 882 fvl~~~e~~~qyY~~i~erIl--------------------------------------DtgvsVRKRvIKIlrdic~e~ 923 (1692)
T KOG1020|consen 882 FVLSIPELIFQYYDQIIERIL--------------------------------------DTGVSVRKRVIKILRDICEET 923 (1692)
T ss_pred hhhccHHHHHHHHHHHHhhcC--------------------------------------CCchhHHHHHHHHHHHHHHhC
Confidence 999999888778877766542 234589999999999999999
Q ss_pred chhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhccc-------------------------CccccCC----
Q 000934 361 PEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNV-------------------------TKGQIDN---- 411 (1219)
Q Consensus 361 ~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~-------------------------~~~~~~~---- 411 (1219)
|+.- .+..++-.++.|.+|.|.+|+.=+..+|..+.=..-+. ..|..+-
T Consensus 924 pdf~--~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~i 1001 (1692)
T KOG1020|consen 924 PDFS--KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHI 1001 (1692)
T ss_pred CChh--hHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 9632 23345556778888888878877777776654221110 0010000
Q ss_pred ----C---CCChhH-HHHHHHHHHHHHHHHHhc------------ccCccchhhHHHHHHHHHHHhcchhhh-hhhhhhh
Q 000934 412 ----N---ELNPRW-LLKQEVSKIVKSINRQLR------------EKSIKTKQVGAFSVLRELVVVLPDCLA-DHIGSLI 470 (1219)
Q Consensus 412 ----~---~~~~~~-~L~~~~p~lv~~l~~~L~------------~~~~~~r~~~~~~~L~~L~~~~~~~l~-~~~~~l~ 470 (1219)
. ..+... .....+..++..+..++. +++..+|-.+++.+|..++...|.-+. .|+..+-
T Consensus 1002 lk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~ 1081 (1692)
T KOG1020|consen 1002 LKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQ 1081 (1692)
T ss_pred HHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhh
Confidence 0 000000 000111112222222221 122233436778888888888888888 6888888
Q ss_pred HhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCC
Q 000934 471 PGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGL 550 (1219)
Q Consensus 471 ~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~ 550 (1219)
|.+...- +..+...+....+..+..++.-. +..-..++..|=..+...+--.......+|+.|++.++.....
T Consensus 1082 PYL~s~~-~t~~~~~fl~~vi~Ile~VlPlv-~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~----- 1154 (1692)
T KOG1020|consen 1082 PYLTSKA-STIEEAQFLYYVIQILECVLPLV-ANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTD----- 1154 (1692)
T ss_pred hHHhccc-cchHHHHHHHHHHHHHHHHhhhh-ccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhcc-----
Confidence 8776542 11111233333444444443221 1111235556656666655444456778888999999875422
Q ss_pred CCCCcccHHHHHHHHHHHhhh---c---CCC---HHHHHHHHHHHHHHHHhhc--------cccc----chhhhHHHHHH
Q 000934 551 GFDFKPYVQPIYNAIMSRLTN---Q---DQD---QEVKECAISCMGLVISTFG--------DNLG----AELPACLPVLV 609 (1219)
Q Consensus 551 ~~~~~~~l~~l~~~ll~~l~~---~---d~d---~~vr~~Ai~alg~l~~~~g--------~~l~----~~~~~~l~~L~ 609 (1219)
-...+..++..++..+.. + +.+ -..-.+++.++|.+.+++. .... .....++..|+
T Consensus 1155 ---~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~ 1231 (1692)
T KOG1020|consen 1155 ---GAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLM 1231 (1692)
T ss_pred ---chHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHH
Confidence 123344455544444432 1 111 1334788999999998762 1100 12344444444
Q ss_pred H--hhcCCchHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHh-------C---
Q 000934 610 D--RMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKA--NRALRQATLGTMNSLVVAY-------G--- 675 (1219)
Q Consensus 610 ~--~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~--~~~lr~~al~~L~~l~~~~-------~--- 675 (1219)
- +..+...|..|+.++|.++....+.-+++. +...+...|... ++..+...+..+...+..- +
T Consensus 1232 ~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~---v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w 1308 (1692)
T KOG1020|consen 1232 YFSKDKDGELRRKALINLGFICIQHPSLFTSRE---VLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNW 1308 (1692)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHH---HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 3 334567899999999998843212111222 222222223221 2222444444433322211 1
Q ss_pred ----------------CCCCc-----chHHHHHHHHhhhcCCCChhhhHHHHHHHHHHhhcccCCCchhHhHhhhhHHHH
Q 000934 676 ----------------DKIGA-----SAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQA 734 (1219)
Q Consensus 676 ----------------~~l~~-----~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l 734 (1219)
+.... ..++..+..++...-+.|.+++..|+.++.-+++..-.+| ...+|.+
T Consensus 1309 ~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP-------~~cvPtL 1381 (1692)
T KOG1020|consen 1309 TKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHP-------VHCVPTL 1381 (1692)
T ss_pred hhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCc-------cchhhhh
Confidence 01111 1344455555555566788888888888877776322233 2456666
Q ss_pred HHHhhhc
Q 000934 735 LALIKSS 741 (1219)
Q Consensus 735 ~~ll~s~ 741 (1219)
+.+-.+|
T Consensus 1382 IAL~Tdp 1388 (1692)
T KOG1020|consen 1382 IALETDP 1388 (1692)
T ss_pred eeecCCh
Confidence 6655444
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.20 E-value=1.5e-09 Score=139.38 Aligned_cols=274 Identities=18% Similarity=0.244 Sum_probs=190.8
Q ss_pred HHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHH
Q 000934 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT 126 (1219)
Q Consensus 47 v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~ 126 (1219)
.++.|+..|+|+++.||..|++.|+.+.. +..++.|...+.+++..+|..+..+|..+.+..+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 45678899999999999999999997642 34566777777788888999999999877544332
Q ss_pred hHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHH
Q 000934 127 SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL 206 (1219)
Q Consensus 127 ~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~ 206 (1219)
.+.|...++++ ++.||..+++.|+.+- .+. ...++..|.|+++.||..|+.+|+.+..
T Consensus 686 --~~~L~~~L~~~--d~~VR~~A~~aL~~~~--~~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~~~------- 743 (897)
T PRK13800 686 --APALRDHLGSP--DPVVRAAALDVLRALR--AGD---------AALFAAALGDPDHRVRIEAVRALVSVDD------- 743 (897)
T ss_pred --hHHHHHHhcCC--CHHHHHHHHHHHHhhc--cCC---------HHHHHHHhcCCCHHHHHHHHHHHhcccC-------
Confidence 12344455553 6899999999998752 111 1245667899999999999999997532
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCc
Q 000934 207 AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1219)
Q Consensus 207 ~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1219)
.+.++..+.+++ ..+|..+..+++.+....+ ..++.+...++ |+|+++|.+++.+|..+- .+
T Consensus 744 ---~~~l~~~l~D~~--~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g--~~ 805 (897)
T PRK13800 744 ---VESVAGAATDEN--REVRIAVAKGLATLGAGGA--------PAGDAVRALTG---DPDPLVRAAALAALAELG--CP 805 (897)
T ss_pred ---cHHHHHHhcCCC--HHHHHHHHHHHHHhccccc--------hhHHHHHHHhc---CCCHHHHHHHHHHHHhcC--Cc
Confidence 123455566655 4899999999988754221 22556666666 578999999999987652 11
Q ss_pred hhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHH
Q 000934 287 RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSK 366 (1219)
Q Consensus 287 ~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~ 366 (1219)
+.+++.+...++ |.+|.||++|+.+|+.+-.
T Consensus 806 -------~~~~~~l~~aL~----------------------------------d~d~~VR~~Aa~aL~~l~~-------- 836 (897)
T PRK13800 806 -------PDDVAAATAALR----------------------------------ASAWQVRQGAARALAGAAA-------- 836 (897)
T ss_pred -------chhHHHHHHHhc----------------------------------CCChHHHHHHHHHHHhccc--------
Confidence 112223333332 1249999999999986521
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhH
Q 000934 367 LYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVG 446 (1219)
Q Consensus 367 ~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~ 446 (1219)
+...+.|+..++|.++.||.+++.+|+.+ .+ -|...+.+.+.+++.+..+| ..
T Consensus 837 --~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~---------------------~~~a~~~L~~al~D~d~~Vr-~~ 889 (897)
T PRK13800 837 --DVAVPALVEALTDPHLDVRKAAVLALTRW---PG---------------------DPAARDALTTALTDSDADVR-AY 889 (897)
T ss_pred --cchHHHHHHHhcCCCHHHHHHHHHHHhcc---CC---------------------CHHHHHHHHHHHhCCCHHHH-HH
Confidence 12446777788999999999999988775 11 12334566677888888899 88
Q ss_pred HHHHHH
Q 000934 447 AFSVLR 452 (1219)
Q Consensus 447 ~~~~L~ 452 (1219)
+...|.
T Consensus 890 A~~aL~ 895 (897)
T PRK13800 890 ARRALA 895 (897)
T ss_pred HHHHHh
Confidence 776664
No 36
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3.4e-06 Score=101.59 Aligned_cols=506 Identities=15% Similarity=0.153 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhh
Q 000934 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLA 121 (1219)
Q Consensus 42 ~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~ 121 (1219)
...+.++++|+..|+|.+..||..|+|-+|.+..+++..-....+...+..+ ++-
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~-~p~------------------------ 391 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLF-NPA------------------------ 391 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhc-CcC------------------------
Confidence 5667899999999999999999999999999998888544444444433321 110
Q ss_pred HHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCC--------hHHHHHHHHHH
Q 000934 122 QSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSAN--------QASVRKKSVSC 193 (1219)
Q Consensus 122 ~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~--------~~~vrk~a~~~ 193 (1219)
+ +...=+++|-+|+++..+ |-.+..-.+.+++.++..+.-+ -..||..|+..
T Consensus 392 ---------------e----~~~aWHgacLaLAELA~r-GlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~ 451 (1133)
T KOG1943|consen 392 ---------------E----DDSAWHGACLALAELALR-GLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYV 451 (1133)
T ss_pred ---------------C----chhHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHH
Confidence 0 133444666666666543 3223233455555555554322 13699999999
Q ss_pred HHHHHhhCCHHHH----HHHHHHHH-HHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCCh
Q 000934 194 IASLASSLSDDLL----AKATIEVV-RNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDE 268 (1219)
Q Consensus 194 l~~l~~~~~~~~~----~~l~~~ll-~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~ 268 (1219)
+-+|+...+...+ +.+...++ .++.++.. ..|++|.-++......-|.. ||=-.++.. .++. .-
T Consensus 452 ~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrev--ncRRAAsAAlqE~VGR~~n~--p~Gi~Lis~-~dy~------sV 520 (1133)
T KOG1943|consen 452 CWAFARAYSPSDLKPVLQSLASALLIVALFDREV--NCRRAASAALQENVGRQGNF--PHGISLIST-IDYF------SV 520 (1133)
T ss_pred HHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchh--hHhHHHHHHHHHHhccCCCC--CCchhhhhh-cchh------hh
Confidence 9999998877644 44444443 34456554 57888777766655433211 111111111 1111 12
Q ss_pred HHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHh-cccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHH
Q 000934 269 ELREYSLQALESFLLRCPRDISSYCDEILHLTLEY-LSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRR 347 (1219)
Q Consensus 269 elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~-l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~ 347 (1219)
..|..|...+-..+..+|... ..+++.++.. +.+ | + -++|.
T Consensus 521 ~~rsNcy~~l~~~ia~~~~y~----~~~f~~L~t~Kv~H---W-------------------d------------~~ire 562 (1133)
T KOG1943|consen 521 TNRSNCYLDLCVSIAEFSGYR----EPVFNHLLTKKVCH---W-------------------D------------VKIRE 562 (1133)
T ss_pred hhhhhHHHHHhHHHHhhhhHH----HHHHHHHHhccccc---c-------------------c------------HHHHH
Confidence 245556666555555555434 4444433221 211 0 0 17899
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChh-HHHH-H---
Q 000934 348 AAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPR-WLLK-Q--- 422 (1219)
Q Consensus 348 ~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~L~-~--- 422 (1219)
.|+.+|..+....|+.+.. .++|.+++.+-..+...|..++.+.++++-+..... |. ..+. .
T Consensus 563 laa~aL~~Ls~~~pk~~a~---~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~----------~~~~~l~e~~i~ 629 (1133)
T KOG1943|consen 563 LAAYALHKLSLTEPKYLAD---YVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE----------PVIKGLDENRIA 629 (1133)
T ss_pred HHHHHHHHHHHhhHHhhcc---cchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh----------hhhhhhHHHHhh
Confidence 9999999999988876553 345666666655667788888888888776533100 00 0000 0
Q ss_pred HHHHHHHHHHHHhccc--CccchhhHHHHHHHHHHHhcchhhhhhhhh-hhHhHHHhhcCCCCcchhHHHHHHHHHHHhc
Q 000934 423 EVSKIVKSINRQLREK--SIKTKQVGAFSVLRELVVVLPDCLADHIGS-LIPGIEKSLNDKSSTSNLKIEALTFTRLVLS 499 (1219)
Q Consensus 423 ~~p~lv~~l~~~L~~~--~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~-l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~ 499 (1219)
-++.+++.+...--.+ ....| ++...+...+....+..+.+.+.. .-..+.+.+.+. ..+|.++...++.++.
T Consensus 630 ~l~~ii~~~~~~~~~rg~~~lmr-~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~---n~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 630 GLLSIIPPICDRYFYRGQGTLMR-QATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP---NQIRDAAVSAVSDLVS 705 (1133)
T ss_pred hhhhhccHHHHHHhccchHHHHH-HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch---HHHHHHHHHHHHHHHH
Confidence 0112222221111010 01122 333333333332222211111111 112222233222 2466777777777764
Q ss_pred cCCCCCchhhh-hhhHHHHHHHhcCCch-HHHHHHHHHHHHHHHhccCCccCCCCCCc-ccHHHHHHHHHHHhhhcCCCH
Q 000934 500 SHSPPVFHPYI-KALSSPVLAAVGERYY-KVTAEALRVCGELVRVLRPSVEGLGFDFK-PYVQPIYNAIMSRLTNQDQDQ 576 (1219)
Q Consensus 500 ~~~~~~~~~~l-~~i~p~l~~~l~d~~~-~v~~~al~~l~~l~~~l~~~~~~~~~~~~-~~l~~l~~~ll~~l~~~d~d~ 576 (1219)
..- ...++. ..++..++..+.+... +++.--..+++.+... ... ++-+.+...++... -.|..+
T Consensus 706 ~y~--~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~----------~i~~~~q~~lc~~~l~~~-p~d~~a 772 (1133)
T KOG1943|consen 706 TYV--KADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSE----------LIHRHLQEKLCKLVLELL-PSDAWA 772 (1133)
T ss_pred HHH--hcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHH----------hhchHHHHHHHHHHhccC-cccccH
Confidence 421 111211 1355555666655533 3333222233322211 111 22333344444432 233367
Q ss_pred HHHHHHHHHHHHHHHhhcc-cccchhhhHHHHHHHhhcCCc----------hHHHHHHHHHHHh--cCCCCCch-hHHHH
Q 000934 577 EVKECAISCMGLVISTFGD-NLGAELPACLPVLVDRMGNEI----------TRLTAVKAFAVIA--ASPLHIDL-TCVLE 642 (1219)
Q Consensus 577 ~vr~~Ai~alg~l~~~~g~-~l~~~~~~~l~~L~~~L~~e~----------~r~~a~~al~~i~--~s~~~~~~-~~~l~ 642 (1219)
+-|+..+.++..++...+. .++..+.++...|+..+.+=+ +|.+|++++..+. .++ +.-+ ...+.
T Consensus 773 ~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~-p~~ld~~~i~ 851 (1133)
T KOG1943|consen 773 EARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSS-PKLLDEDSIN 851 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcC-cccccHHHHH
Confidence 8899999999999988874 344577888888888775421 5889999988775 221 1112 33444
Q ss_pred HHHHH-HHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000934 643 HVIAE-LTAFLRKANRALRQATLGTMNSLVVA 673 (1219)
Q Consensus 643 ~~l~~-L~~~L~~~~~~lr~~al~~L~~l~~~ 673 (1219)
.++-. +.+...|-++ +|..+..|+..+...
T Consensus 852 ~~~~~~vqQ~veKIdr-lre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 852 RIIRYFVQQAVEKIDR-LRELAASALNQIVVH 882 (1133)
T ss_pred HHHHHHHHHhHHHHHH-HHHHHHHHHhceeec
Confidence 44442 3333345555 499999999999876
No 37
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.13 E-value=3e-09 Score=136.60 Aligned_cols=275 Identities=18% Similarity=0.170 Sum_probs=190.3
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHH
Q 000934 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1219)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~ 83 (1219)
..+..|++.+.|+|+++|..|..-|...- ....++.|.+.|+|++.+||..|+..|+.+....+..
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~--- 686 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA--- 686 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch---
Confidence 35677888899999999999998885431 1346788889999999999999999999886543331
Q ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhh
Q 000934 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1219)
Q Consensus 84 ~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~ 163 (1219)
+.|...+.++++.+|..+..+|..+-. +. .+.++..+.++ ++.||..++..|+.+ +.
T Consensus 687 ---~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-----------~~~l~~~L~D~--d~~VR~~Av~aL~~~----~~- 743 (897)
T PRK13800 687 ---PALRDHLGSPDPVVRAAALDVLRALRA--GD-----------AALFAAALGDP--DHRVRIEAVRALVSV----DD- 743 (897)
T ss_pred ---HHHHHHhcCCCHHHHHHHHHHHHhhcc--CC-----------HHHHHHHhcCC--CHHHHHHHHHHHhcc----cC-
Confidence 234445555666777777777765321 11 12345566665 689999999999864 11
Q ss_pred hhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh
Q 000934 164 MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY 243 (1219)
Q Consensus 164 l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~ 243 (1219)
.+.++..+.|+++.||..++.+|+.+...-.. .++.+...+.+++ ..+|..++.+++.+...
T Consensus 744 --------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~-----~~~~L~~ll~D~d--~~VR~aA~~aLg~~g~~--- 805 (897)
T PRK13800 744 --------VESVAGAATDENREVRIAVAKGLATLGAGGAP-----AGDAVRALTGDPD--PLVRAAALAALAELGCP--- 805 (897)
T ss_pred --------cHHHHHHhcCCCHHHHHHHHHHHHHhccccch-----hHHHHHHHhcCCC--HHHHHHHHHHHHhcCCc---
Confidence 12355678999999999999999988653221 1445556666654 47899888888877321
Q ss_pred hhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccc
Q 000934 244 RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAY 323 (1219)
Q Consensus 244 ~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~ 323 (1219)
+.+.+.+...++ +++..+|..|.++|+.+- . ++.++.+...++
T Consensus 806 ------~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~--~--------~~a~~~L~~~L~------------------ 848 (897)
T PRK13800 806 ------PDDVAAATAALR---ASAWQVRQGAARALAGAA--A--------DVAVPALVEALT------------------ 848 (897)
T ss_pred ------chhHHHHHHHhc---CCChHHHHHHHHHHHhcc--c--------cchHHHHHHHhc------------------
Confidence 223345666676 578899999999997542 1 223345555553
Q ss_pred cccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Q 000934 324 EEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFI 395 (1219)
Q Consensus 324 ~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~ 395 (1219)
|.+|.||+.|+.+|+.+ ...| ...+.|...++|.++.||.++..++.
T Consensus 849 ----------------D~~~~VR~~A~~aL~~~-~~~~--------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 849 ----------------DPHLDVRKAAVLALTRW-PGDP--------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred ----------------CCCHHHHHHHHHHHhcc-CCCH--------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 23489999999999885 1112 24556667779999999999988775
No 38
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.06 E-value=3.2e-07 Score=110.91 Aligned_cols=541 Identities=13% Similarity=0.131 Sum_probs=327.7
Q ss_pred HHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhc-CCCcchhhHHHHHHHHHHhhcCChhhhH
Q 000934 44 EVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLL-NGKDQHRDIASIALKTIIAEVTTSSLAQ 122 (1219)
Q Consensus 44 ~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~-~~~~~~r~~a~~aL~~~i~~~~~~~~~~ 122 (1219)
....++.+.... |.+-+|+..+..-+|.+.+.+..+....++...+..+. .....+|+.+...|.+++...+....
T Consensus 119 r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~-- 195 (759)
T KOG0211|consen 119 RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKL-- 195 (759)
T ss_pred hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH--
Confidence 455677777777 88999999999999999887777666555554444443 23344688888899988888775222
Q ss_pred HHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCC
Q 000934 123 SIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS 202 (1219)
Q Consensus 123 ~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~ 202 (1219)
...+.|.+...... + -...|..++.+++.....+.+ ..-...+.+.....-+|..+.||+.+..-++.++.++.
T Consensus 196 --~~~lv~l~~~l~~~-d-~~~sr~sacglf~~~~~~~~~--~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~ 269 (759)
T KOG0211|consen 196 --REHLVPLLKRLATG-D-WFQSRLSACGLFGKLYVSLPD--DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE 269 (759)
T ss_pred --HHHHHHHHHHccch-h-hhhcchhhhhhhHHhccCCCh--HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHH
Confidence 23444444322211 1 123456666666655544432 12345566666677788889999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHH
Q 000934 203 DDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFL 282 (1219)
Q Consensus 203 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~ 282 (1219)
.+...+.+......+...+. +.+|..++..++.+........ +....+.+.+++..+ +.+..+|......+..+.
T Consensus 270 ~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~---d~~~~v~~~~~~~~~~L~ 344 (759)
T KOG0211|consen 270 SEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVE---DGSWRVSYMVADKFSELS 344 (759)
T ss_pred HHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhc---ChhHHHHHHHhhhhhhHH
Confidence 87654444444444433332 4789999999998887654332 455666777776655 344555544444433333
Q ss_pred HhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCc-
Q 000934 283 LRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP- 361 (1219)
Q Consensus 283 ~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~- 361 (1219)
..... ....++.++.....+ .|..|.+|.+.++=...+-....
T Consensus 345 ~~~~~--~~~~~~~~~~~~~l~----------------------------------~~~~~e~r~a~a~~~~~l~~~l~~ 388 (759)
T KOG0211|consen 345 SAVGP--SATRTQLVPPVSNLL----------------------------------KDEEWEVRYAIAKKVQKLACYLNA 388 (759)
T ss_pred HHhcc--ccCcccchhhHHHHh----------------------------------cchhhhhhHHhhcchHHHhhhcCc
Confidence 32221 111112222222222 13457888887755544433221
Q ss_pred -hhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCc
Q 000934 362 -EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSI 440 (1219)
Q Consensus 362 -~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~ 440 (1219)
.+.....+.++|.+.....+.++-||.........+....+ ..+.++.+.+.....+++..+
T Consensus 389 ~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-----------------k~~ti~~llp~~~~~l~de~~ 451 (759)
T KOG0211|consen 389 SCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-----------------KERTISELLPLLIGNLKDEDP 451 (759)
T ss_pred ccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-----------------cCcCccccChhhhhhcchhhH
Confidence 11122334456766555577777887665433322211111 122345555666677777777
Q ss_pred cchhhHHHHHHHHHHHhcc-hhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHH
Q 000934 441 KTKQVGAFSVLRELVVVLP-DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLA 519 (1219)
Q Consensus 441 ~~r~~~~~~~L~~L~~~~~-~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~ 519 (1219)
.+| ......+..+-...+ .+...+...++|.+...-.|.. ++++.+.+.++..++...+-+.+. +.+.+.+..
T Consensus 452 ~V~-lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~--wRvr~ail~~ip~la~q~~~~~~~---~~~~~l~~~ 525 (759)
T KOG0211|consen 452 IVR-LNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLL--WRVRLAILEYIPQLALQLGVEFFD---EKLAELLRT 525 (759)
T ss_pred HHH-HhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchh--HHHHHHHHHHHHHHHHhhhhHHhh---HHHHHHHHh
Confidence 777 665544444433331 2344566777777776666653 788889898888887664422232 334445555
Q ss_pred HhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccc
Q 000934 520 AVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGA 599 (1219)
Q Consensus 520 ~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~ 599 (1219)
.+.|..+.++..|...+-.++...|. . -+...+.+.++.... +...-+|...+.++..++..+|..+
T Consensus 526 ~l~d~v~~Ir~~aa~~l~~l~~~~G~-------~--w~~~~~i~k~L~~~~--q~~y~~R~t~l~si~~la~v~g~ei-- 592 (759)
T KOG0211|consen 526 WLPDHVYSIREAAARNLPALVETFGS-------E--WARLEEIPKLLAMDL--QDNYLVRMTTLFSIHELAEVLGQEI-- 592 (759)
T ss_pred hhhhhHHHHHHHHHHHhHHHHHHhCc-------c--hhHHHhhHHHHHHhc--CcccchhhHHHHHHHHHHHHhccHH--
Confidence 67788889999999999999887752 1 123344444444332 2247789999999999999998755
Q ss_pred hhhhHHHHHHHhhcC--CchHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000934 600 ELPACLPVLVDRMGN--EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVA 673 (1219)
Q Consensus 600 ~~~~~l~~L~~~L~~--e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~ 673 (1219)
+-..++|.+.+...+ ..+|.++++.+..+..-- +.+..=..+.|.+..+-+.++...|..|..+++.+...
T Consensus 593 ~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L---~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 593 TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL---DESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc---chHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 456677777765544 358999999998876211 11222233444444444577888999999988887654
No 39
>PRK09687 putative lyase; Provisional
Probab=99.05 E-value=1.8e-08 Score=110.35 Aligned_cols=256 Identities=16% Similarity=0.100 Sum_probs=175.8
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccch
Q 000934 170 RLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL 249 (1219)
Q Consensus 170 ~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l 249 (1219)
.-++.+.+.|.|++..||..|+.+|+.+.. +. .++.+...+.+++ ..+|..++.++|.+...- + ..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~---~~----~~~~l~~ll~~~d--~~vR~~A~~aLg~lg~~~--~---~~ 88 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG---QD----VFRLAIELCSSKN--PIERDIGADILSQLGMAK--R---CQ 88 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc---ch----HHHHHHHHHhCCC--HHHHHHHHHHHHhcCCCc--c---ch
Confidence 345567777899999999999999987653 22 3444444445543 478999999999975311 1 13
Q ss_pred hhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchh
Q 000934 250 GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEED 329 (1219)
Q Consensus 250 ~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~ 329 (1219)
...+|.+...+.. +.++++|..+..+++.+....+ .+.+.+++.+...+.
T Consensus 89 ~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~------------------------ 138 (280)
T PRK09687 89 DNVFNILNNLALE--DKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAF------------------------ 138 (280)
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhh------------------------
Confidence 4567777665332 6789999999999988732211 123344444433331
Q ss_pred hccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCcccc
Q 000934 330 ESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQI 409 (1219)
Q Consensus 330 ~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~ 409 (1219)
|.+|.||++|+.+|+.+-. +..++.|+..++|.++.||..+..+++.+ ..
T Consensus 139 ----------D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~--~~-------- 188 (280)
T PRK09687 139 ----------DKSTNVRFAVAFALSVIND----------EAAIPLLINLLKDPNGDVRNWAAFALNSN--KY-------- 188 (280)
T ss_pred ----------CCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcC--CC--------
Confidence 1258999999999975421 23667788888999999999999998876 11
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHH
Q 000934 410 DNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIE 489 (1219)
Q Consensus 410 ~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~ 489 (1219)
.-|.+++.+.+.+.++++.+| ..+...|+.+-. +..+|.+.+.+++. .++..
T Consensus 189 -------------~~~~~~~~L~~~L~D~~~~VR-~~A~~aLg~~~~----------~~av~~Li~~L~~~----~~~~~ 240 (280)
T PRK09687 189 -------------DNPDIREAFVAMLQDKNEEIR-IEAIIGLALRKD----------KRVLSVLIKELKKG----TVGDL 240 (280)
T ss_pred -------------CCHHHHHHHHHHhcCCChHHH-HHHHHHHHccCC----------hhHHHHHHHHHcCC----chHHH
Confidence 134556667778899999999 888877776432 35677788888763 36777
Q ss_pred HHHHHHHHhccCCCCCchhhhhhhHHHHHHHhc-CCchHHHHHHHHHHHH
Q 000934 490 ALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG-ERYYKVTAEALRVCGE 538 (1219)
Q Consensus 490 al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~-d~~~~v~~~al~~l~~ 538 (1219)
+...++.+-. +..+|.+...++ +++.+++..|..++.+
T Consensus 241 a~~ALg~ig~-----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 241 IIEAAGELGD-----------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHhcCC-----------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 8888887632 356777777775 6778888888877654
No 40
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=0.00021 Score=86.16 Aligned_cols=248 Identities=15% Similarity=0.156 Sum_probs=126.9
Q ss_pred HHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCc--chhhHHHHHHHHHHhhcCChhhhHHHHHhH
Q 000934 51 VVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKD--QHRDIASIALKTIIAEVTTSSLAQSIHTSL 128 (1219)
Q Consensus 51 ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~--~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l 128 (1219)
.+++.-|+++.+|..|...|.++-+ .+..+..|++.+.++.. .+|.+|++-||..|..- |+.-
T Consensus 9 ~~~~T~d~d~~~R~~AE~~L~q~~K------~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~---------W~~~ 73 (1010)
T KOG1991|consen 9 IFRATIDSDAKERKAAEQQLNQLEK------QPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKS---------WSSH 73 (1010)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhhc------CCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhc---------CCcc
Confidence 4455568889999999998887643 23455666666555433 36899999999877421 1100
Q ss_pred hHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHH
Q 000934 129 TPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAK 208 (1219)
Q Consensus 129 ~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~ 208 (1219)
- ..|....- . .+....+-+.++..+-.....+|..=..|+..+...--+..|..
T Consensus 74 ~---~~g~~~~I-~----------------------e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~ 127 (1010)
T KOG1991|consen 74 E---APGRPFGI-P----------------------EEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPG 127 (1010)
T ss_pred C---CCCCcCCC-C----------------------hHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchh
Confidence 0 00000000 0 01111222222222222233455555566656655554566788
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh-----------hhhccchhhhHHHHHHhhhccCCCChHHHH---HH
Q 000934 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG-----------YRFGPHLGDTVPVLIDYCTSASENDEELRE---YS 274 (1219)
Q Consensus 209 l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~-----------~~~~~~l~~iip~ll~~~~~~~~~d~elre---~a 274 (1219)
+++.+...+++++. ...-+++-++..+++.-- .-+..++|.+.....+.+. +++.+.-+ ..
T Consensus 128 l~d~i~~~Lqs~~~--~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~---~~s~~s~el~klI 202 (1010)
T KOG1991|consen 128 LLDKIKNLLQSQDA--NHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLS---QESYQSVELQKLI 202 (1010)
T ss_pred HHHHHHHHhcCcch--hhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhcc---ccchHHHHHHHHH
Confidence 88888877777653 344567777777777532 1122234444444444444 23444333 33
Q ss_pred HHHHHHHHH-hCchhhcc--cHHHHHHHHHHhccc-CCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHH
Q 000934 275 LQALESFLL-RCPRDISS--YCDEILHLTLEYLSY-DPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAA 350 (1219)
Q Consensus 275 l~~l~~l~~-~~~~~~~~--~l~~ii~~~l~~l~~-dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa 350 (1219)
+..+-+.+. ..|..+.. .+..-+.+.+..+.. -|+ +.... |..+.-...=||+.++|.
T Consensus 203 lKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~--E~l~~----------------d~e~R~~~~wwK~KKWa~ 264 (1010)
T KOG1991|consen 203 LKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPV--EVLSL----------------DPEDRSSWPWWKCKKWAL 264 (1010)
T ss_pred HHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCCh--hcccC----------------ChhhcccccchhhHHHHH
Confidence 333333332 23432221 233344455544432 122 00000 000011234589999999
Q ss_pred HHHHHHHhcCch
Q 000934 351 KCLAALIVSRPE 362 (1219)
Q Consensus 351 ~~l~~li~~~~~ 362 (1219)
.-+..+...++.
T Consensus 265 ~~L~Rlf~Ryg~ 276 (1010)
T KOG1991|consen 265 HILNRLFERYGS 276 (1010)
T ss_pred HHHHHHHHHhCC
Confidence 999999988763
No 41
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.93 E-value=0.00044 Score=82.40 Aligned_cols=612 Identities=13% Similarity=0.107 Sum_probs=296.6
Q ss_pred HHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCC--CcchhhHHHHHHHHHHhhcCChhhhHHHHH
Q 000934 49 NIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG--KDQHRDIASIALKTIIAEVTTSSLAQSIHT 126 (1219)
Q Consensus 49 ~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~--~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~ 126 (1219)
-.++....+++..||.+|.+.+.++-. ++ .+-..|+....+. +-..|.+|..-|+..++.--.
T Consensus 7 i~~L~~~ls~d~~vr~~AE~~l~qle~--~~----~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~--------- 71 (1005)
T KOG2274|consen 7 IELLSGSLSADQNVRSQAETQLKQLEL--TE----GFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWS--------- 71 (1005)
T ss_pred HHHHHhhcCCChhHHHHHHHHHhcccc--ch----HHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCC---------
Confidence 345566778999999999988876642 12 2444555555433 446788999888887764322
Q ss_pred hHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHH
Q 000934 127 SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL 206 (1219)
Q Consensus 127 ~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~ 206 (1219)
...+...++. .+. ......+.+.++..+.++...+|+.+..+++.++...-++.|
T Consensus 72 ----~~~E~fr~~~---~~~------------------e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~W 126 (1005)
T KOG2274|consen 72 ----PNFEAFRYPL---IVS------------------EEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEW 126 (1005)
T ss_pred ----ChHhhccCCC---ccc------------------HHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhh
Confidence 1222222211 010 112233445555666677889999999999999999888889
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccch-hhhHHHHHHhhhccCCCChHHHHHHH-----HHHHH
Q 000934 207 AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSL-----QALES 280 (1219)
Q Consensus 207 ~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al-----~~l~~ 280 (1219)
.++++.++..+.+.+. ...-.+++++..+..-.-..-.++. +...+.+.....-.....+-.|-.+. .++-.
T Consensus 127 pElv~~i~~~l~~~n~--n~i~~am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~ 204 (1005)
T KOG2274|consen 127 PELVPFILKLLSSGNE--NSIHGAMRVLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLT 204 (1005)
T ss_pred HHHHHHHHHHHhccch--hhhhhHHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHH
Confidence 9999999999987543 3455778888877765531111111 12222222222111122233332221 22222
Q ss_pred HHHhCch----hhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHH
Q 000934 281 FLLRCPR----DISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAAL 356 (1219)
Q Consensus 281 l~~~~~~----~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~l 356 (1219)
++....+ ..+.++.++++..+..+.+--. -.+...|..|..-.+++..+
T Consensus 205 li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~---------------------------~~~g~~~~~~~eilk~~t~l 257 (1005)
T KOG2274|consen 205 LITNVEEVWAEHVKVFLSQILNQFMDILEHPLQ---------------------------RNDGSDFSLRMEILKCLTQL 257 (1005)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---------------------------ccccchHHHHHHHHHHHHHH
Confidence 2222221 2223444444433333221000 00113488999999999999
Q ss_pred HhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHH-HHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHh
Q 000934 357 IVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFI-ELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQL 435 (1219)
Q Consensus 357 i~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L 435 (1219)
...+|-...++....+|..- ++.......+. +-+.+++..-..+.+ ..+....+...+-.++..+...+
T Consensus 258 ~~nfp~~~~~~~~~~~~~vw--------~~~~~~~~~yir~~V~~~e~~~~~~~d--sd~e~~~~~~l~i~i~eF~s~i~ 327 (1005)
T KOG2274|consen 258 VENFPSLINPFMMGMFSIVW--------QTLEKILAVYVRESVNGTEDSYDARYD--SDPEEKSVETLVIQIVEFLSTIV 327 (1005)
T ss_pred HHhhHHhhhHHHHhhhhHHH--------HHHHHHHhhhhhhhccccccCcccccC--CchhhhChHHhhhhHHHHHHHHH
Confidence 99998666655555444332 11111111110 011111110000010 01111112222223332222222
Q ss_pred cccC-----ccchhhHHHH---HHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCch
Q 000934 436 REKS-----IKTKQVGAFS---VLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFH 507 (1219)
Q Consensus 436 ~~~~-----~~~r~~~~~~---~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~ 507 (1219)
.... .+.. -.++. ++.++.+. .+..=..-......+.......+..+-..+-.++...+.....
T Consensus 328 t~~~~~~ti~~~l-~~lI~~~v~y~Qlsee-------qie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~i~ 399 (1005)
T KOG2274|consen 328 TNRFLSKTIKKNL-PELIYQLVAYLQLSEE-------QIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNEGIN 399 (1005)
T ss_pred HHHHHHHHhhhhh-HHHHHHHHHHHHhhHH-------HHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccchhhh
Confidence 1100 0000 00000 00111100 0000000001111222222245555555555555544433333
Q ss_pred hhhhhhHHHHHHH-----hcC-CchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHH
Q 000934 508 PYIKALSSPVLAA-----VGE-RYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKEC 581 (1219)
Q Consensus 508 ~~l~~i~p~l~~~-----l~d-~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~ 581 (1219)
|-.+..-..+..+ ++. .++++.+.-+.....+ +. +.....++..++..+..++.-++. +.+--+
T Consensus 400 ~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~----~~-----~~~~dd~l~~l~~~~~~~l~~~e~-P~Ll~R 469 (1005)
T KOG2274|consen 400 PIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESV----RI-----DDANDDKLIELTIMIDNGLVYQES-PFLLLR 469 (1005)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhc----cc-----CcchHHHHHHHHHHHHhhcccccC-HHHHHH
Confidence 3222211112111 111 1233333222222222 11 223446667777766676654443 555568
Q ss_pred HHHHHHHHHHhhcccccchhhhHHHHHHHhhcC---CchHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhH
Q 000934 582 AISCMGLVISTFGDNLGAELPACLPVLVDRMGN---EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRA 658 (1219)
Q Consensus 582 Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~---e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~ 658 (1219)
|+.+++.+...+-. -.+.+...+...+..+.- +..|..|++++.-.+. ..-+.+..+.++.-|.++..+....
T Consensus 470 a~~~i~~fs~~~~~-~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~---~~vl~~~~p~ild~L~qlas~~s~e 545 (1005)
T KOG2274|consen 470 AFLTISKFSSSTVI-NPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK---VKVLLSLQPMILDGLLQLASKSSDE 545 (1005)
T ss_pred HHHHHHHHHhhhcc-chhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC---ceeccccchHHHHHHHHHcccccHH
Confidence 99998866555311 112334444444444433 3356666666654441 1234677777888888888777777
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhc--CCCChhhhHHHHHHHHHHhhcccCCCchhHhHhhhhHHHHHH
Q 000934 659 LRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLI--SDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALA 736 (1219)
Q Consensus 659 lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l--~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ 736 (1219)
+-..-+++|+..+.--+. +....-..+.+....+. .++|+++...+..++..+++.. .....+....+|.++.
T Consensus 546 vl~llmE~Ls~vv~~dpe-f~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~----~~~g~m~e~~iPslis 620 (1005)
T KOG2274|consen 546 VLVLLMEALSSVVKLDPE-FAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA----ANYGPMQERLIPSLIS 620 (1005)
T ss_pred HHHHHHHHHHHHhccChh-hhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH----HhhcchHHHHHHHHHH
Confidence 777888888877654322 22222233444443332 4568898888888888887642 2234577889999999
Q ss_pred Hhhhccc--chhhHHHHHHHHHHHHhhcCCCh
Q 000934 737 LIKSSLL--QGQALVALQSFFAALVYSANTSF 766 (1219)
Q Consensus 737 ll~s~~l--~~~~l~al~~~~~~l~~~~~~~~ 766 (1219)
.++.+.- ....+.-...++..+.+..++.+
T Consensus 621 il~~~~~~~~~~l~~~aidvLttvvr~tp~pL 652 (1005)
T KOG2274|consen 621 VLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL 652 (1005)
T ss_pred HHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence 8875531 11112334555666666654443
No 42
>PRK09687 putative lyase; Provisional
Probab=98.91 E-value=5.3e-08 Score=106.58 Aligned_cols=230 Identities=13% Similarity=0.086 Sum_probs=117.9
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHH
Q 000934 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1219)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~ 83 (1219)
+++..|++.+.+.|..+|..|...|.. +. ...+++.+.+++.|+++.||..|+..||.+-.. .....
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~-~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~--~~~~~ 89 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQL-RG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMA--KRCQD 89 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHh-cC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--ccchH
Confidence 556677777788888888888777632 21 124445555556666666666666666665321 11122
Q ss_pred HHHHHHHHHh-cCCCcchhhHHHHHHHHHHhhcCC--hhhhH---------------HH--------HHhHhHHHHHhhh
Q 000934 84 EMTDKLCIKL-LNGKDQHRDIASIALKTIIAEVTT--SSLAQ---------------SI--------HTSLTPQLTKGIT 137 (1219)
Q Consensus 84 ~l~~~L~~~~-~~~~~~~r~~a~~aL~~~i~~~~~--~~~~~---------------~~--------~~~l~p~L~~~l~ 137 (1219)
..++.|...+ .+++..+|..+..+|+.+...-+. +.+.. .. -+..+|.|+..+.
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~ 169 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLK 169 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhc
Confidence 3344444332 234445566666666654321110 00000 00 0223445555555
Q ss_pred ccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 000934 138 LKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNL 217 (1219)
Q Consensus 138 ~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l 217 (1219)
++ ++.||..+...|+.+ + ...+...+.++..+.|+++.||+.|+.+|+.+.. ...++.+++.+
T Consensus 170 d~--~~~VR~~A~~aLg~~----~----~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~av~~Li~~L 232 (280)
T PRK09687 170 DP--NGDVRNWAAFALNSN----K----YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRVLSVLIKEL 232 (280)
T ss_pred CC--CHHHHHHHHHHHhcC----C----CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhHHHHHHHHH
Confidence 43 355666666666544 0 0123444555555566666666666666655321 13555566655
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 000934 218 RSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALE 279 (1219)
Q Consensus 218 ~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~ 279 (1219)
.++. .+..++.++|.+.. +..+|.+.+.++. .+|.+++..+.++|+
T Consensus 233 ~~~~----~~~~a~~ALg~ig~----------~~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 233 KKGT----VGDLIIEAAGELGD----------KTLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred cCCc----hHHHHHHHHHhcCC----------HhHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 5432 33444455444422 3456666666653 357777777777664
No 43
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.90 E-value=0.00095 Score=83.77 Aligned_cols=662 Identities=15% Similarity=0.161 Sum_probs=320.7
Q ss_pred HHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhc
Q 000934 420 LKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLS 499 (1219)
Q Consensus 420 L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~ 499 (1219)
+...+...++.|...+.++.+.+| ..|+.+|+.++++-|..+ ..+.+-..+..-+.|++ ..+|.+|+.++|.++-
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialR-tkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~Dss--asVREAaldLvGrfvl 884 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALR-TKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSS--ASVREAALDLVGRFVL 884 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHH-HHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccch--hHHHHHHHHHHhhhhh
Confidence 445567778888888988888899 999999999998755443 23344456666777765 5799999999999987
Q ss_pred cCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHH
Q 000934 500 SHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVK 579 (1219)
Q Consensus 500 ~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr 579 (1219)
.+. .+..+.+..+...+.|..--||-.+++.+.+++... | +|.... .+...++.+. +|....|+
T Consensus 885 ~~~-----e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~-p-------df~~i~-~~cakmlrRv--~DEEg~I~ 948 (1692)
T KOG1020|consen 885 SIP-----ELIFQYYDQIIERILDTGVSVRKRVIKILRDICEET-P-------DFSKIV-DMCAKMLRRV--NDEEGNIK 948 (1692)
T ss_pred ccH-----HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-C-------ChhhHH-HHHHHHHHHh--ccchhHHH
Confidence 653 355666777778888988889999999999998752 2 333322 2222333333 23333466
Q ss_pred HHHHHHHHHHHHhhcccccchhh-hHHHHHHHhhcCCchHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHH-HHH-hh
Q 000934 580 ECAISCMGLVISTFGDNLGAELP-ACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAF-LRK-AN 656 (1219)
Q Consensus 580 ~~Ai~alg~l~~~~g~~l~~~~~-~~l~~L~~~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~-L~~-~~ 656 (1219)
.-+...+-.+ |+.|.-. ...+...+....+.....+... . ...|.++++..+... +.+ ..
T Consensus 949 kLv~etf~kl------WF~p~~~~~d~~~~~~kI~~~~~vv~~~~d----~-------~~~~~eqLl~~ilk~~~~~~~~ 1011 (1692)
T KOG1020|consen 949 KLVRETFLKL------WFTPVPEVNDQPAKARKISLEVDVVMSQVD----L-------MNDWLEQLLDHILKFYLLKTMK 1011 (1692)
T ss_pred HHHHHHHHHH------hccCCCcccccHHHHHhhHHHHHHHHHHHH----H-------hcChHHHHHHHHHHHHHhhhhh
Confidence 5555554433 3443111 1111111111111111111110 0 134555555443221 111 11
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHh--hhcCCCChhhhHHHHHHHHHHhhcccCCCchhH-hHhhhhHHH
Q 000934 657 RALRQATLGTMNSLVVAYGDKIGASAYEVIIVELS--TLISDSDLHMTALALELCCTLMADKRSSPNVGL-AVRNKVLPQ 733 (1219)
Q Consensus 657 ~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~--~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~-~~~~~~l~~ 733 (1219)
.+.+..++.++.....-.-. .....+. ++- ...++.+.....+.+..|..+++ ..|.-.. .+...+.|.
T Consensus 1012 ~~~~~v~~~~v~~~~~L~~~----cl~~~i~-ev~~~~~~~~~~~~~~~~~lstL~~Fsk---irP~Llt~khv~tL~PY 1083 (1692)
T KOG1020|consen 1012 ESVKPVALAKVTHVLNLLTH----CLVEKIS-EVESDDMNEEESEVRLLAYLSTLFVFSK---IRPQLLTKKHVITLQPY 1083 (1692)
T ss_pred hhhhHHHHhhcchHHHHHHH----HHHHHHH-hhhhHhhhcccchhHHHHHHHHHHHHHh---cCchhccHHHHHHhhhH
Confidence 22222222222221110000 0011111 111 11122333444566677777777 4665332 334444454
Q ss_pred HHHHhhhcccchhhHHHHHHHHHHHHhhcC---CCh-HHHHHHHhccCCCCCCCcchhhhhhhhhhhHhhhhhhc--cCc
Q 000934 734 ALALIKSSLLQGQALVALQSFFAALVYSAN---TSF-DTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLA--AGD 807 (1219)
Q Consensus 734 l~~ll~s~~l~~~~l~al~~~~~~l~~~~~---~~~-~~l~~~Ll~~~~~~~~~~~l~~~a~~~~a~~i~~i~~~--~~~ 807 (1219)
+-.-..+.. ....++.+..+++.+..-.. ..| .++=+.|+.-+-..|... ..++-.|+|.++.. .|-
T Consensus 1084 L~s~~~t~~-~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~------V~~~vsCl~sl~~k~~~~~ 1156 (1692)
T KOG1020|consen 1084 LTSKASTIE-EAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMAT------VVEAVSCLGSLATKRTDGA 1156 (1692)
T ss_pred HhccccchH-HHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHH------HHHHHHHHHHHHhhhccch
Confidence 432221111 12233445555554443221 111 111122221111110001 11122477777653 121
Q ss_pred cchhhHHHHHHHHh---hcCC-CC----chHHHHHHHHHHHhhhccCCCCC-------c----cchHHHHH---H-hcCC
Q 000934 808 QKCSSTVKMLTDIL---KDDS-ST----NSAKQHLALLCLGEIGRRKDLSS-------H----EHIENVII---E-SFQS 864 (1219)
Q Consensus 808 ~~~~~~l~~~~~~l---~~~~-~~----~~~~~~laL~~Lgeig~~~~~~~-------~----~~l~~~ll---~-~l~~ 864 (1219)
..+......|...+ +.+- +. ..+.-.=.+.++|-+.|+.+... . +.+.+.++ . +...
T Consensus 1157 ~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~ 1236 (1692)
T KOG1020|consen 1157 KVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKD 1236 (1692)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHh
Confidence 12233444443332 3210 01 11222235677898888765421 0 12222222 2 3345
Q ss_pred CchhHhHHHHHHHHhhhhcCcccch-HHHHHHhc----ccc---chhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Q 000934 865 PFEEIKSAASYALGNIAVGNLSKFL-PFILDQID----NQQ---KKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLL 936 (1219)
Q Consensus 865 ~~e~vR~aAa~aLG~l~~~~~~~~l-p~il~~l~----~~~---~~~~~~l~alkeii~~~~~~~~~~~~~~~~~i~~~L 936 (1219)
.+.++|..|..+||.++..|++-+. +.+...+. ++. .....++..+-..+.....
T Consensus 1237 ~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~----------------- 1299 (1692)
T KOG1020|consen 1237 KDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEK----------------- 1299 (1692)
T ss_pred hhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 6799999999999999999877655 23322221 111 1122223333322221100
Q ss_pred HhhccCCccchHhHHHHHHhhhhccCc------------ccchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhh
Q 000934 937 FNHCESEEEGVRNVVAECLGKIALIEP------------AKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEII 1004 (1219)
Q Consensus 937 ~~~~~~~~e~~r~~~ae~LG~l~~~~p------------~~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l 1004 (1219)
+.-+.........-++=++.+..+.. ..|++.+.+..-+.+...|.+++..++-++..|-- . =
T Consensus 1300 -~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLV--h--P 1374 (1692)
T KOG1020|consen 1300 -KLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLV--H--P 1374 (1692)
T ss_pred -HHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCC--C--c
Confidence 00000111122222233333322110 14666666666677889999999999988776531 1 1
Q ss_pred hHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHHHhhhcccccceeeeccCceeecccChhHHHH
Q 000934 1005 FPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKA 1084 (1219)
Q Consensus 1005 ~~~i~~~l~~l~D~~~~vR~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~elir~v~mgpfkh~~Ddgle~Rk~ 1084 (1219)
..|+|.++.+-.|+...+|..|...|--+=...+..|-..+.+=+..-|.--..-++.-+ -..+-|......+- +
T Consensus 1375 ~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv~sk~~~G~~lsf~lq~~~~~~~~-~~~~~fr~~d~ss~----t 1449 (1692)
T KOG1020|consen 1375 VHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFVFSKLSQGVQLSFKLQQHIDEKTY-KPVRGFRLPDHSSS----T 1449 (1692)
T ss_pred cchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh-cccccccCcccchh----H
Confidence 357888887778999999999999777766666666666664433222221000000000 00111221111122 3
Q ss_pred HHHHHHHHHhhhhcCCCchhchHHHHhcccCC--cchhHhhHHH--HHHHHHh---hCchhHHHhHHHhhHHHHhhhccc
Q 000934 1085 AFECVDTLLDSCLDQVNPSSFIVPYLKSGLED--HYDVKMPCHL--ILSKLAD---KCPSAVLAVLDSLVDPLQKTINFK 1157 (1219)
Q Consensus 1085 a~e~l~~ll~~~~~~~~~~~~~~~~~~~gl~D--~~di~~l~~~--~l~~l~~---~~p~~~~~~l~~l~~~l~~~l~~k 1157 (1219)
-...+|+++... +.....|+ +-+.++..| ...+..+-|. .|+.+=. --|-.++..+|..+.....++...
T Consensus 1450 l~s~ly~~~r~n--k~~rr~fl-~si~~lfd~~~ks~vs~~~yiadnLA~fPyvsqdEPLyl~~tID~~la~~g~~ll~~ 1526 (1692)
T KOG1020|consen 1450 LKSNLYKSIRGN--KQIRRSFL-QSILDLFDDPNKSVVSFLLYIADNLANFPYVSQDEPLYLMHTIDLTLARLGEVLLDE 1526 (1692)
T ss_pred HHhccHHHHhhh--HHHHHHHH-HHHHHhccCCCcchhhhHHHHHhhhccCCcccccchHHHHHHHHHHHHHhhHHHHHH
Confidence 334566666653 44566677 577887777 3445544332 1333322 334455667777776666665544
Q ss_pred CCcchhh
Q 000934 1158 PKQDAVK 1164 (1219)
Q Consensus 1158 ~k~~~~k 1164 (1219)
.|+.-.+
T Consensus 1527 ~K~~l~~ 1533 (1692)
T KOG1020|consen 1527 FKELLHK 1533 (1692)
T ss_pred HHHHhcc
Confidence 4444333
No 44
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=0.00014 Score=84.94 Aligned_cols=235 Identities=15% Similarity=0.140 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHhccc-CccchhhHHHHHHHHHHHhc---chhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHH
Q 000934 422 QEVSKIVKSINRQLREK-SIKTKQVGAFSVLRELVVVL---PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLV 497 (1219)
Q Consensus 422 ~~~p~lv~~l~~~L~~~-~~~~r~~~~~~~L~~L~~~~---~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l 497 (1219)
+.-|.+-.++.+.+.+. +..+| .++...+..++... +.+|.++++.+...+.+.+..... -.-|...+.+++.+
T Consensus 522 e~k~l~Y~a~lnLL~d~~D~vV~-Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e-~Dtk~~VL~~ls~l 599 (978)
T KOG1993|consen 522 ELKPLLYCAFLNLLQDQNDLVVR-LTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEE-CDTKTSVLNLLSTL 599 (978)
T ss_pred hHHHHHHHHHHHhcCccccceee-hHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 34566667888888877 45688 88888888887653 566788888888777777764432 23477889999999
Q ss_pred hccCCCCCchhhhhh---hHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCC
Q 000934 498 LSSHSPPVFHPYIKA---LSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQ 574 (1219)
Q Consensus 498 ~~~~~~~~~~~~l~~---i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~ 574 (1219)
+...+ +.+.||... ++|.++..-+ ..+-.+..-+.++.+++..+|.. +..+.|++-++++.. .|.
T Consensus 600 I~r~~-e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~q----S~~~~~fL~pVIel~------~D~ 667 (978)
T KOG1993|consen 600 IERVS-EHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQ----SFEFYPFLYPVIELS------TDP 667 (978)
T ss_pred HHHHH-HhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccC----CccchHHHHHHHHHh------cCC
Confidence 98765 455676544 4455554433 34567888899999999998764 334555555554422 222
Q ss_pred C----HHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCC-chHHHHHHHHHHHh-cCCCCCchhHHHHHHHHHH
Q 000934 575 D----QEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE-ITRLTAVKAFAVIA-ASPLHIDLTCVLEHVIAEL 648 (1219)
Q Consensus 575 d----~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e-~~r~~a~~al~~i~-~s~~~~~~~~~l~~~l~~L 648 (1219)
. .-.-+-++.-.+..+.+.. .+.|.+-.++|.++..+.-. .+-.+++..+..-+ ... +.-+..|...+.+.+
T Consensus 668 ~sP~hv~L~EDgmeLW~~~L~n~~-~l~p~ll~L~p~l~~~iE~ste~L~t~l~Ii~sYilLd~-~~fl~~y~~~i~k~~ 745 (978)
T KOG1993|consen 668 SSPEHVYLLEDGMELWLTTLMNSQ-KLTPELLLLFPHLLYIIEQSTENLPTVLMIISSYILLDN-TVFLNDYAFGIFKKL 745 (978)
T ss_pred CCCceeehhhhHHHHHHHHHhccc-ccCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHH
Confidence 2 2345677777777777763 46677777778777665321 12223344443322 111 111245556666666
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHH
Q 000934 649 TAFLRKANRALRQATLGTMNSLVV 672 (1219)
Q Consensus 649 ~~~L~~~~~~lr~~al~~L~~l~~ 672 (1219)
..++.+-...--.+.+..+..+++
T Consensus 746 ~~~l~dvr~egl~avLkiveili~ 769 (978)
T KOG1993|consen 746 NDLLDDVRNEGLQAVLKIVEILIK 769 (978)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHh
Confidence 666654333333344444444443
No 45
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.87 E-value=1.3e-05 Score=96.15 Aligned_cols=388 Identities=16% Similarity=0.172 Sum_probs=227.4
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhh-HH
Q 000934 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR-VV 83 (1219)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~-~~ 83 (1219)
.+...++.+.+. +.|+-++..++..+....+- +... .+.++.+|++.+.+.=..++.+|..+........ .+
T Consensus 4 ~~~~~l~~l~~~--~~~~~~L~~l~~~~~~~~~l---~~~~--~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~ 76 (503)
T PF10508_consen 4 WINELLEELSSK--AERLEALPELKTELSSSPFL---ERLP--EPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLP 76 (503)
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHhhhhHH---Hhch--HHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHH
Confidence 345666666655 56888889888877653210 1111 1227788887776666677777776665444332 33
Q ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhh
Q 000934 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1219)
Q Consensus 84 ~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~ 163 (1219)
.+.+.|...+.+++ +.||.-++..++.+++.....
T Consensus 77 ~~~~~L~~gL~h~~---------------------------------------------~~Vr~l~l~~l~~~~~~~~~~ 111 (503)
T PF10508_consen 77 QYQPFLQRGLTHPS---------------------------------------------PKVRRLALKQLGRIARHSEGA 111 (503)
T ss_pred HHHHHHHHHhcCCC---------------------------------------------HHHHHHHHHHHHHHhcCCHHH
Confidence 44444444444444 444444444444444332221
Q ss_pred hh-HhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHH-----HHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000934 164 MS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKA-----TIEVVRNLRSKGAKPEMIRTNIQMVGAL 237 (1219)
Q Consensus 164 l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l-----~~~ll~~l~~~~~~~~~~~~~i~~l~~l 237 (1219)
.. -....+++.++.++.+++..|.+.|+.+|..++..-. .++.+ +..+...+.+++ +..|-.++.++..+
T Consensus 112 ~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~--~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 112 AQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSS--DIVRCRVYELLVEI 187 (503)
T ss_pred HHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccC--HHHHHHHHHHHHHH
Confidence 11 1124567778888899999999999999999987532 22333 566666555533 35677788889999
Q ss_pred HHHhhhhhccch-hhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHH--HHHHHHHHhcccCCCCCCCC
Q 000934 238 SRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD--EILHLTLEYLSYDPNFTDNM 314 (1219)
Q Consensus 238 ~~~~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~--~ii~~~l~~l~~dpn~~~~~ 314 (1219)
+...+.-+.-.. ..+++.+++.+. ++|.-++..|++.+..++. .+. -..|+. .+++.+...+... .
T Consensus 188 ~~~S~~~~~~~~~sgll~~ll~eL~---~dDiLvqlnalell~~La~-~~~-g~~yL~~~gi~~~L~~~l~~~-~----- 256 (503)
T PF10508_consen 188 ASHSPEAAEAVVNSGLLDLLLKELD---SDDILVQLNALELLSELAE-TPH-GLQYLEQQGIFDKLSNLLQDS-E----- 256 (503)
T ss_pred HhcCHHHHHHHHhccHHHHHHHHhc---CccHHHHHHHHHHHHHHHc-Chh-HHHHHHhCCHHHHHHHHHhcc-c-----
Confidence 887765543322 238888888886 4566688899999999988 442 334443 3566666655310 0
Q ss_pred CCCcccccccccchhhccCCCCCCCcc-cHHHHH-HHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHH
Q 000934 315 EEDSDDEAYEEEEEDESANEYTDDEDA-SWKVRR-AAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFN 392 (1219)
Q Consensus 315 d~d~~~~~~~~~~d~~~~~~~~dddD~-swkVR~-~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~ 392 (1219)
+|. .-.+.- ...+..+.+....|..+...|+.++..+...+...+...+..++.
T Consensus 257 ------------------------~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~d 312 (503)
T PF10508_consen 257 ------------------------EDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFD 312 (503)
T ss_pred ------------------------cCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 000 001111 122455555555565555566666666666667778888889999
Q ss_pred HHHHHHHHhcccCccccCCCCCChhHHH----HHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhh
Q 000934 393 TFIELVRQTGNVTKGQIDNNELNPRWLL----KQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGS 468 (1219)
Q Consensus 393 ~l~~l~~~~~~~~~~~~~~~~~~~~~~L----~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~ 468 (1219)
+++.+..... |. ..| .+.+..+++.+...........| ..++..|..+....+..-.+.+..
T Consensus 313 tlg~igst~~------------G~-~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk-~r~l~al~~il~~~~~~~~~~i~~ 378 (503)
T PF10508_consen 313 TLGQIGSTVE------------GK-QLLLQKQGPAMKHVLKAIGDAIKSGSTELK-LRALHALASILTSGTDRQDNDILS 378 (503)
T ss_pred HHHHHhCCHH------------HH-HHHHhhcchHHHHHHHHHHHHhcCCchHHH-HHHHHHHHHHHhcCCCCchHHHHH
Confidence 9998864321 11 123 22345666666666666555677 778888888865543311112222
Q ss_pred hhH-------------hHHHhhcCCCCcchhHHHHHHHHHHHhc
Q 000934 469 LIP-------------GIEKSLNDKSSTSNLKIEALTFTRLVLS 499 (1219)
Q Consensus 469 l~~-------------~l~~~l~d~~~~~~~~~~al~~l~~l~~ 499 (1219)
+.. .+...++.+. +.+|.+++.++..++.
T Consensus 379 ~~~~w~~~~~~~~~~~~l~~~~~qPF--~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 379 ITESWYESLSGSPLSNLLMSLLKQPF--PELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHHHHhcCCchHHHHHHHhcCCc--hHHHHHHHHHHHHHhc
Confidence 333 3333344333 5788888888888764
No 46
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.86 E-value=6.5e-06 Score=96.69 Aligned_cols=380 Identities=19% Similarity=0.283 Sum_probs=245.4
Q ss_pred HHHHHHhcCCCcc--hhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccC-----ccchhhHHHHHHHHHHhhhcCh
Q 000934 7 AAILEKITGKDKD--FRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD-----VAGDVSGLAVKCLAPLVKKVSE 79 (1219)
Q Consensus 7 ~~ll~~~~~~d~d--~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D-----~~~eVq~~A~k~l~~l~~~~~~ 79 (1219)
..++..+.+.+++ .+|.-.-+....+. ......+.++..++..+.. .+.+.-..+..|+..++.+...
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls-----~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~ 76 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALS-----TSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQE 76 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHH-----CChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccc
Confidence 4567777666654 55543333323332 2334455555566655552 2556677888888888765433
Q ss_pred hh--------HH-HHHHHHHHHhcCC----C---cchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHH-----Hhhhc
Q 000934 80 PR--------VV-EMTDKLCIKLLNG----K---DQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLT-----KGITL 138 (1219)
Q Consensus 80 ~~--------~~-~l~~~L~~~~~~~----~---~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~-----~~l~~ 138 (1219)
.. .. .+++.++..+... . +..=+..+..++.++..++. +-+..+++.+...++ ..++.
T Consensus 77 ~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~-~~q~~~~~~~~~lf~~~~~~~~~~~ 155 (415)
T PF12460_consen 77 DKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSP-EKQQEILDELYSLFLSPKSFSPFQP 155 (415)
T ss_pred ccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHccccccCCCCc
Confidence 22 12 2677777666432 1 12224556667777777776 344445555555544 01111
Q ss_pred cCC-ChhHHHHHHHHHHHHHHHhhhhhh-HhHHHHHHHHhhhhc-CChHHHHHHHHHHHHHHHhhCCHH-HHHHHHHHHH
Q 000934 139 KDM-NTEIRCECLDILCDVLHKFGNLMS-NDHERLLSALLPQLS-ANQASVRKKSVSCIASLASSLSDD-LLAKATIEVV 214 (1219)
Q Consensus 139 ~~~-~~~v~~~al~~L~~l~~~~g~~l~-~~~~~l~~~ll~~l~-~~~~~vrk~a~~~l~~l~~~~~~~-~~~~l~~~ll 214 (1219)
... ........+-++..++....+... +....+++.++.... ..++..|..+.++++.++.-.+++ .++.++..+.
T Consensus 156 ~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~ 235 (415)
T PF12460_consen 156 SSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLL 235 (415)
T ss_pred cccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHH
Confidence 110 012333445556666666555443 345556666666644 344789999999999999886444 5777777777
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHH
Q 000934 215 RNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD 294 (1219)
Q Consensus 215 ~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~ 294 (1219)
..+.. ......+..+++.+..+.++.=-|-.|.-..++..+++.+. ++++...+.++|+-++.-.+..
T Consensus 236 ~~~~~-~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~-----~~~~g~~aA~~f~il~~d~~~~------ 303 (415)
T PF12460_consen 236 QSISS-SEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLS-----SPELGQQAAKAFGILLSDSDDV------ 303 (415)
T ss_pred hhhcc-cCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhC-----ChhhHHHHHHHHhhHhcCcHHh------
Confidence 77622 22235778899999999998777777777888888888775 4667777776666554322210
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Q 000934 295 EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPK 374 (1219)
Q Consensus 295 ~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~ 374 (1219)
+. +...+-.+.| +-..+|..++|.
T Consensus 304 ---------l~--------------------------------------~~~~a~vklL---------ykQR~F~~~~p~ 327 (415)
T PF12460_consen 304 ---------LN--------------------------------------KENHANVKLL---------YKQRFFTQVLPK 327 (415)
T ss_pred ---------cC--------------------------------------ccccchhhhH---------HhHHHHHHHHHH
Confidence 00 0000111111 113478899999
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHH
Q 000934 375 LIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLREL 454 (1219)
Q Consensus 375 Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L 454 (1219)
|++.+++.+...|...+.++..++++. |...+..++|++++.+.+.|.-++..++ .+++.+|..+
T Consensus 328 L~~~~~~~~~~~k~~yL~ALs~ll~~v--------------P~~vl~~~l~~LlPLLlqsL~~~~~~v~-~s~L~tL~~~ 392 (415)
T PF12460_consen 328 LLEGFKEADDEIKSNYLTALSHLLKNV--------------PKSVLLPELPTLLPLLLQSLSLPDADVL-LSSLETLKMI 392 (415)
T ss_pred HHHHHhhcChhhHHHHHHHHHHHHhhC--------------CHHHHHHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHH
Confidence 999998887778888899999999875 6667889999999999999988888889 9999999999
Q ss_pred HHhcchhhhhhhhhhhHhHHH
Q 000934 455 VVVLPDCLADHIGSLIPGIEK 475 (1219)
Q Consensus 455 ~~~~~~~l~~~~~~l~~~l~~ 475 (1219)
....+..+.+|+..++|.+++
T Consensus 393 l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 393 LEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHcCHHHHHHHHHHHHHHHHh
Confidence 988888899999999998875
No 47
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=4.3e-07 Score=103.56 Aligned_cols=358 Identities=17% Similarity=0.184 Sum_probs=233.0
Q ss_pred HHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhh
Q 000934 86 TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS 165 (1219)
Q Consensus 86 ~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~ 165 (1219)
.+.+...+.+++.+.+--+..+++.+.+.-..+....-+..-++|++.+.+...+ ++.++.+|..+|..++......-.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~-~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDD-NPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCC-ChhHHHHHHHHHHHHhcCchhhcc
Confidence 3344444445555445556666777665444334545555678999999998654 688999999999998764333211
Q ss_pred H-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH---HH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000934 166 N-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1219)
Q Consensus 166 ~-~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~ 240 (1219)
- -....++.+...+.+++..|+..|+-|||.++.-.+.- .+ ...++.++..+..+.. ....+.+.-++..+|+.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK-LSMLRNATWTLSNLCRG 225 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc-hHHHHHHHHHHHHHHcC
Confidence 1 12345667888999999999999999999998755432 22 4577888888776553 35778999999999996
Q ss_pred h-hhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcc
Q 000934 241 V-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSD 319 (1219)
Q Consensus 241 ~-~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~ 319 (1219)
. |.-=...+..++|.+...+. ..|+++..-+.+|+..+...-++.
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~---~~D~~Vl~Da~WAlsyLsdg~ne~------------------------------- 271 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLH---STDEEVLTDACWALSYLTDGSNEK------------------------------- 271 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHhcCChHH-------------------------------
Confidence 5 32111235667888888777 467888777776654333221100
Q ss_pred cccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH
Q 000934 320 DEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVR 399 (1219)
Q Consensus 320 ~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~ 399 (1219)
+..++ -..+.|.|++.+...+.+|+..++++++.++.
T Consensus 272 ---------------------------------iq~vi----------~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 272 ---------------------------------IQMVI----------DAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred ---------------------------------HHHHH----------HccchHHHHHHHcCCCcccccHHHhhccceee
Confidence 11111 12356777777777778888888888777654
Q ss_pred HhcccCccccCCCCCChhHHHHHH--HHHHHHHHHHHhc-ccCccchhhHHHHHHHHHHHhcchhhhh-hhhhhhHhHHH
Q 000934 400 QTGNVTKGQIDNNELNPRWLLKQE--VSKIVKSINRQLR-EKSIKTKQVGAFSVLRELVVVLPDCLAD-HIGSLIPGIEK 475 (1219)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~L~~~--~p~lv~~l~~~L~-~~~~~~r~~~~~~~L~~L~~~~~~~l~~-~~~~l~~~l~~ 475 (1219)
.+. ...+. -...++.+...+. ++....| ..|+.+++.+....+..... .-..++|.+..
T Consensus 309 G~d----------------~QTq~vi~~~~L~~l~~ll~~s~~~~ik-kEAcW~iSNItAG~~~qiqaVida~l~p~Li~ 371 (514)
T KOG0166|consen 309 GSD----------------EQTQVVINSGALPVLSNLLSSSPKESIK-KEACWTISNITAGNQEQIQAVIDANLIPVLIN 371 (514)
T ss_pred ccH----------------HHHHHHHhcChHHHHHHHhccCcchhHH-HHHHHHHHHhhcCCHHHHHHHHHcccHHHHHH
Confidence 221 11111 1334456666666 3444466 55666888887655544444 33467899999
Q ss_pred hhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhh--hhhHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 000934 476 SLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYI--KALSSPVLAAVGERYYKVTAEALRVCGELVRV 542 (1219)
Q Consensus 476 ~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l--~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~ 542 (1219)
.|+... .+.|.||..+++.+..+..++ .-.|+ ..++++++..+.-++.++..-++.+++.+.+.
T Consensus 372 ~l~~~e--f~~rKEAawaIsN~ts~g~~~-qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 372 LLQTAE--FDIRKEAAWAISNLTSSGTPE-QIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHhccc--hHHHHHHHHHHHhhcccCCHH-HHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 987643 578999999999887765432 22333 44788888888666778888889999988876
No 48
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=6.1e-07 Score=102.32 Aligned_cols=352 Identities=15% Similarity=0.174 Sum_probs=244.8
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhccccC-CCChHHHHHHHHHHHHhcc-CccchhhHHHHHHHHHHhhhcChhhH-
Q 000934 6 MAAILEKITGKDKDFRYMATSDLLNELNKESF-KADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSEPRV- 82 (1219)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~-~~~~~~~~~v~~~ll~~L~-D~~~eVq~~A~k~l~~l~~~~~~~~~- 82 (1219)
....++++.+.|+..++-|+..+++.+.++.. .++.-....+++.+...|. +.++.+|-.|+-+|..++..-.+..-
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 56778888999999999999999999987543 2334444568888888886 78899999999999999875443221
Q ss_pred ---HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHH-HhHhHHHHHhhhccCCChhHHHHHHHHHHHHHH
Q 000934 83 ---VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVLH 158 (1219)
Q Consensus 83 ---~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~-~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~ 158 (1219)
...++.+...+.+++.++++.|.-||+.+....+. +..-++ ..+++.|+..+.... .-.....+..+|+.+++
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~--~Rd~vl~~g~l~pLl~~l~~~~-~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD--CRDYVLSCGALDPLLRLLNKSD-KLSMLRNATWTLSNLCR 224 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH--HHHHHHhhcchHHHHHHhcccc-chHHHHHHHHHHHHHHc
Confidence 23466677788888999999999999998876653 222222 235567777776543 22466678889999987
Q ss_pred Hhhhhh-hHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 000934 159 KFGNLM-SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL----LAKATIEVVRNLRSKGAKPEMIRTNIQM 233 (1219)
Q Consensus 159 ~~g~~l-~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~----~~~l~~~ll~~l~~~~~~~~~~~~~i~~ 233 (1219)
.--+.= -.....+++.+...+.+.+..|..-|+-+++.++..-++.. -..+++.++..|.++.. .++--++.+
T Consensus 225 gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~--~v~~PaLRa 302 (514)
T KOG0166|consen 225 GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP--KVVTPALRA 302 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc--ccccHHHhh
Confidence 542211 13567889999999999999999999999999997766652 24688999999988765 456678999
Q ss_pred HHHHHHHhhhhhccch--hhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHH-HHHHHHHHhcccCCCC
Q 000934 234 VGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD-EILHLTLEYLSYDPNF 310 (1219)
Q Consensus 234 l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~-~ii~~~l~~l~~dpn~ 310 (1219)
+|.|+-+.... ...+ ...+|.+...+.. ...+-+|+.|.+++..+....++.+...++ .++|.+...++..
T Consensus 303 iGNIvtG~d~Q-Tq~vi~~~~L~~l~~ll~~--s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~--- 376 (514)
T KOG0166|consen 303 IGNIVTGSDEQ-TQVVINSGALPVLSNLLSS--SPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA--- 376 (514)
T ss_pred ccceeeccHHH-HHHHHhcChHHHHHHHhcc--CcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc---
Confidence 99987655432 2211 3456666666663 234558999999999999888876666554 4677777766421
Q ss_pred CCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhc-CchhhHHHHH-HHHHHHHhhhcccchhHHH
Q 000934 311 TDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS-RPEMLSKLYE-EACPKLIDRFKEREENVKM 388 (1219)
Q Consensus 311 ~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~-~~~~l~~~~~-~i~p~Li~~~~d~~~~Vr~ 388 (1219)
..++|+.|+-+++.+..+ .++.+.-+++ .+++.+...+.-.+..+-.
T Consensus 377 -------------------------------ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~ 425 (514)
T KOG0166|consen 377 -------------------------------EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIIL 425 (514)
T ss_pred -------------------------------chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHH
Confidence 037899999999987655 3444443222 3566666666444434334
Q ss_pred HHHHHHHHHHH
Q 000934 389 DVFNTFIELVR 399 (1219)
Q Consensus 389 ~~~~~l~~l~~ 399 (1219)
.++.++..+++
T Consensus 426 v~Ld~l~nil~ 436 (514)
T KOG0166|consen 426 VALDGLENILK 436 (514)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 49
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.80 E-value=0.0012 Score=78.84 Aligned_cols=195 Identities=12% Similarity=0.110 Sum_probs=110.5
Q ss_pred hhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcc
Q 000934 469 LIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVE 548 (1219)
Q Consensus 469 l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~ 548 (1219)
++.....++.-. ..+.+|+.++..+...+ ++..+.++.+.|+..+.+...+...++-.--..++...++. .|..
T Consensus 491 fl~~~v~~l~~~-~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef- 564 (1005)
T KOG2274|consen 491 FLNATVNALTMD-VPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEF- 564 (1005)
T ss_pred HHHHHHHhhccC-CCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-Chhh-
Confidence 333334444322 23567888777666665 45678888889999998887766555544444455555542 2321
Q ss_pred CCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCCchHHHHHHHHHHH
Q 000934 549 GLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVI 628 (1219)
Q Consensus 549 ~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i 628 (1219)
...... .+.+.++........|+-|-..+-.++-++....
T Consensus 565 --~as~~s---kI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~----------------------------------- 604 (1005)
T KOG2274|consen 565 --AASMES---KICPLTINLFLKYSEDPQVASLAQDLFEELLQIA----------------------------------- 604 (1005)
T ss_pred --hhhhhc---chhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-----------------------------------
Confidence 001111 2222222222222334434333333332222110
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhh-cCCCChhhhH
Q 000934 629 AASPLHIDLTCVLEHVIAELTAFLRKAN----RALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTL-ISDSDLHMTA 703 (1219)
Q Consensus 629 ~~s~~~~~~~~~l~~~l~~L~~~L~~~~----~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~-l~~~d~~~~~ 703 (1219)
. ..+|+...++|.+.+.+..++ ..+-..++..|..++++.++++++..+....+.+.+. +.++|-...+
T Consensus 605 -~-----~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ 678 (1005)
T KOG2274|consen 605 -A-----NYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQ 678 (1005)
T ss_pred -H-----hhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHH
Confidence 0 014445555666666665544 5677788889999999988888776666666666443 4556777888
Q ss_pred HHHHHHHHHhhc
Q 000934 704 LALELCCTLMAD 715 (1219)
Q Consensus 704 ~al~~l~~l~~~ 715 (1219)
.+-++|..++..
T Consensus 679 ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 679 NATECLRALISV 690 (1005)
T ss_pred hHHHHHHHHHhc
Confidence 999999988863
No 50
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=8.1e-05 Score=86.82 Aligned_cols=484 Identities=17% Similarity=0.196 Sum_probs=268.1
Q ss_pred HHHhccCccchhhHHHHH-HHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHh
Q 000934 51 VVQQLDDVAGDVSGLAVK-CLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLT 129 (1219)
Q Consensus 51 ll~~L~D~~~eVq~~A~k-~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~ 129 (1219)
|.++|++.+..-..-|.| .++.+++ .+.+..+.+....++.+.+.+++..--.-|-...++-|.-.+- =|
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~---G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL------SI 110 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAK---GKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL------SI 110 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee------eH
Confidence 344555544433444444 4444443 2346777788888887777776554333333344444330000 01
Q ss_pred HHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 000934 130 PQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKA 209 (1219)
Q Consensus 130 p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l 209 (1219)
..+-.++.++ ++.+|..|+.+|+.+- +..-.+-++-++-.+..|+.+-|||.|..|+..+-..-+++ ..++
T Consensus 111 ntfQk~L~Dp--N~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~-k~qL 181 (968)
T KOG1060|consen 111 NTFQKALKDP--NQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ-KDQL 181 (968)
T ss_pred HHHHhhhcCC--cHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh-HHHH
Confidence 2344566665 5889999999988652 11123444555556678889999999999999887655443 3345
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhh
Q 000934 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDI 289 (1219)
Q Consensus 210 ~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~ 289 (1219)
++.+-..|.+.. +-+...++.+|..+|-.--+-+.+|...+..++.+. +|--. .-
T Consensus 182 ~e~I~~LLaD~s--plVvgsAv~AF~evCPerldLIHknyrklC~ll~dv--------deWgQ--vv------------- 236 (968)
T KOG1060|consen 182 EEVIKKLLADRS--PLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDV--------DEWGQ--VV------------- 236 (968)
T ss_pred HHHHHHHhcCCC--CcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccch--------hhhhH--HH-------------
Confidence 554444444433 346667777777664322233445555555444321 11100 01
Q ss_pred cccHHHHHHHHHHhccc---CCCCCCCCCCCcccccccccchh--hccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhh
Q 000934 290 SSYCDEILHLTLEYLSY---DPNFTDNMEEDSDDEAYEEEEED--ESANEYTDDEDASWKVRRAAAKCLAALIVSRPEML 364 (1219)
Q Consensus 290 ~~~l~~ii~~~l~~l~~---dpn~~~~~d~d~~~~~~~~~~d~--~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l 364 (1219)
++..+.+|.+. +|+..+.+-++... +-...+. +....|. ..|| +
T Consensus 237 ------lI~mL~RYAR~~l~~P~~~~~~~e~n~~--~~~~~~~~~~~~~P~~----------------------~d~D-~ 285 (968)
T KOG1060|consen 237 ------LINMLTRYARHQLPDPTVVDSSLEDNGR--SCNLKDKYNEIRTPYV----------------------NDPD-L 285 (968)
T ss_pred ------HHHHHHHHHHhcCCCccccccccccCcc--cccccccccccCCCcc----------------------cCcc-H
Confidence 23333444332 55432211111000 0000000 0001111 1121 1
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchh
Q 000934 365 SKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQ 444 (1219)
Q Consensus 365 ~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~ 444 (1219)
..+++..-|.| ..++..|-.++.+++..+. | ..++..|++++.+.|.++.. ++
T Consensus 286 ~lLL~stkpLl----~S~n~sVVmA~aql~y~lA-----------------P----~~~~~~i~kaLvrLLrs~~~-vq- 338 (968)
T KOG1060|consen 286 KLLLQSTKPLL----QSRNPSVVMAVAQLFYHLA-----------------P----KNQVTKIAKALVRLLRSNRE-VQ- 338 (968)
T ss_pred HHHHHhccHHH----hcCCcHHHHHHHhHHHhhC-----------------C----HHHHHHHHHHHHHHHhcCCc-ch-
Confidence 22344444443 6778888888888877663 3 22567788899998877654 66
Q ss_pred hHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCC
Q 000934 445 VGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGER 524 (1219)
Q Consensus 445 ~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~ 524 (1219)
...++-+..++...|+-|.+|+..+.- -+.++..+++=-+..|..++... .+..|++.+...+++.
T Consensus 339 yvvL~nIa~~s~~~~~lF~P~lKsFfv-------~ssDp~~vk~lKleiLs~La~es-------ni~~ILrE~q~YI~s~ 404 (968)
T KOG1060|consen 339 YVVLQNIATISIKRPTLFEPHLKSFFV-------RSSDPTQVKILKLEILSNLANES-------NISEILRELQTYIKSS 404 (968)
T ss_pred hhhHHHHHHHHhcchhhhhhhhhceEe-------ecCCHHHHHHHHHHHHHHHhhhc-------cHHHHHHHHHHHHhcC
Confidence 777777888888878888888876531 11122334444456666666542 3678888888888888
Q ss_pred chHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhH
Q 000934 525 YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPAC 604 (1219)
Q Consensus 525 ~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~ 604 (1219)
+..+++.|+.+++......+ .+-...+..++..+.+. |..|-..|...+-.++..-.. .-.++
T Consensus 405 d~~faa~aV~AiGrCA~~~~-----------sv~~tCL~gLv~Llssh--de~Vv~eaV~vIk~Llq~~p~----~h~~i 467 (968)
T KOG1060|consen 405 DRSFAAAAVKAIGRCASRIG-----------SVTDTCLNGLVQLLSSH--DELVVAEAVVVIKRLLQKDPA----EHLEI 467 (968)
T ss_pred chhHHHHHHHHHHHHHHhhC-----------chhhHHHHHHHHHHhcc--cchhHHHHHHHHHHHHhhChH----HHHHH
Confidence 77888889988888876543 33455666777777755 456777777777776654321 12233
Q ss_pred HHHHHHhh---cCCchHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000934 605 LPVLVDRM---GNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLV 671 (1219)
Q Consensus 605 l~~L~~~L---~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~ 671 (1219)
+..|.+.+ .-...|...++.+|..+.- .....++++..+..-...++..+|...+.....+.
T Consensus 468 i~~La~lldti~vp~ARA~IiWLige~~e~-----vpri~PDVLR~laksFs~E~~evKlQILnL~aKLy 532 (968)
T KOG1060|consen 468 LFQLARLLDTILVPAARAGIIWLIGEYCEI-----VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLY 532 (968)
T ss_pred HHHHHHHhhhhhhhhhhceeeeeehhhhhh-----cchhchHHHHHHHHhhccccchhhHHHHHhhhhhe
Confidence 33333333 2223344556666665522 13344555555555555667777877777666554
No 51
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.70 E-value=2.2e-05 Score=94.18 Aligned_cols=347 Identities=15% Similarity=0.195 Sum_probs=218.7
Q ss_pred HHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcCh--h--hHHH
Q 000934 9 ILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE--P--RVVE 84 (1219)
Q Consensus 9 ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~--~--~~~~ 84 (1219)
++..+++.+++.=-.+..-|...+.. .. ......++.+.+..+|..|++.||..|.+.++.++..-.. + .-..
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~--~~-~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSA--LS-PDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhc--cC-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 44445544444433333333333332 11 1233788999999999999999999999999988753211 0 0136
Q ss_pred HHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHH-HHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhh
Q 000934 85 MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSI-HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1219)
Q Consensus 85 l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~-~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~ 163 (1219)
+++.++..+.+++..+...|+.+|+.+...-+. . ..+ -..+.+.|...+... +..+|..+++++..+...-...
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~--~-~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG--L-EQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh--H-HHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcCHHH
Confidence 777788888777777777777777777653211 1 111 112255666666553 4678999999999987665555
Q ss_pred hhHh-HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH-HH--HHHHHHHHHHhhcCCCCh----HHHHHHHHHHH
Q 000934 164 MSND-HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-LL--AKATIEVVRNLRSKGAKP----EMIRTNIQMVG 235 (1219)
Q Consensus 164 l~~~-~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~--~~l~~~ll~~l~~~~~~~----~~~~~~i~~l~ 235 (1219)
+... ...+++.++..+.+++.-+|..++..++.++..-... ++ ..+++.+...+.+...++ -..-..+..+|
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 4322 2348999999999988999999999999999832222 22 346677777666544322 12234568888
Q ss_pred HHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCch-h-h----cccHHHHHHHHHHhcccCCC
Q 000934 236 ALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR-D-I----SSYCDEILHLTLEYLSYDPN 309 (1219)
Q Consensus 236 ~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~-~-~----~~~l~~ii~~~l~~l~~dpn 309 (1219)
.++...|..+....|.++..+.+... ..|...+..|+.+++.+...... . + .+-+..++..+..+.+
T Consensus 275 ~la~~~~~~v~~~~p~~~~~l~~~~~---s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~---- 347 (503)
T PF10508_consen 275 NLARVSPQEVLELYPAFLERLFSMLE---SQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIK---- 347 (503)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhc----
Confidence 88887776666666788888877766 47888999999999988643321 1 1 0111122222222211
Q ss_pred CCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCch--------hhHHHHHHHHH-----HHH
Q 000934 310 FTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPE--------MLSKLYEEACP-----KLI 376 (1219)
Q Consensus 310 ~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~--------~l~~~~~~i~p-----~Li 376 (1219)
..+-.+|-.+..++..++...++ ....+|+.+.. .+.
T Consensus 348 ------------------------------~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~ 397 (503)
T PF10508_consen 348 ------------------------------SGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLM 397 (503)
T ss_pred ------------------------------CCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHH
Confidence 01124788888888888765432 22335554321 334
Q ss_pred hhhcccchhHHHHHHHHHHHHHHH
Q 000934 377 DRFKEREENVKMDVFNTFIELVRQ 400 (1219)
Q Consensus 377 ~~~~d~~~~Vr~~~~~~l~~l~~~ 400 (1219)
+.++.+=+++|.+++..+..++.+
T Consensus 398 ~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 398 SLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHhcCCchHHHHHHHHHHHHHhcC
Confidence 445666689999999999998865
No 52
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=0.0033 Score=74.42 Aligned_cols=586 Identities=13% Similarity=0.132 Sum_probs=300.7
Q ss_pred HHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCC--CcchhhHHHHHHHHHHhh-cCChhhhHH
Q 000934 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG--KDQHRDIASIALKTIIAE-VTTSSLAQS 123 (1219)
Q Consensus 47 v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~--~~~~r~~a~~aL~~~i~~-~~~~~~~~~ 123 (1219)
+-..+.+.| +|++.||+.|.+.|..+-.. +.+. -.|++.+.++ ..+.|-+|+.++|..|+. -.+
T Consensus 7 l~~~l~qTl-~pdps~rk~aEr~L~~~e~q--~~y~----l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~------ 73 (960)
T KOG1992|consen 7 LANYLLQTL-SPDPSVRKPAERALRSLEGQ--QNYP----LLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIP------ 73 (960)
T ss_pred HHHHHHhcC-CCCCccCchHHHHHHHhccC--CCch----HHHHHHHhccCcChhHHHHHHHHHHHHHHhccCc------
Confidence 333333333 57789999999998876532 2232 3334444433 356788999999988762 111
Q ss_pred HHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCH
Q 000934 124 IHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD 203 (1219)
Q Consensus 124 ~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~ 203 (1219)
..+.-. +......+.+-..++...-+....+++-=-.+++.++..--+
T Consensus 74 ------------------~~~~~~--------------~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP 121 (960)
T KOG1992|consen 74 ------------------AEDSPI--------------KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFP 121 (960)
T ss_pred ------------------CCCCcc--------------ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccc
Confidence 000000 000112223333333444444567888888888888888777
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh----------------hhhccchhhhHHHHHHhhhccCCCC
Q 000934 204 DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG----------------YRFGPHLGDTVPVLIDYCTSASEND 267 (1219)
Q Consensus 204 ~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~----------------~~~~~~l~~iip~ll~~~~~~~~~d 267 (1219)
+-|+.+++.+...+...+- .+-.+.+.+--+|-+.-- ++|..-+..+.......++.. +.|
T Consensus 122 ~kWptLl~dL~~~ls~~D~--~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~-~~~ 198 (960)
T KOG1992|consen 122 DKWPTLLPDLVARLSSGDF--NVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRH-AND 198 (960)
T ss_pred hhhHHHHHHHHhhccccch--HHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhc-ccc
Confidence 7899999999999886543 233333444333433211 222222333333333333322 223
Q ss_pred hHHHHHHHHHHH-------HH-HHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCC
Q 000934 268 EELREYSLQALE-------SF-LLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDE 339 (1219)
Q Consensus 268 ~elre~al~~l~-------~l-~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~ddd 339 (1219)
..--..-++.+- ++ ..-.|+.|..++.+-++...++++||--.-.+++++ -
T Consensus 199 ~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee---------------------~ 257 (960)
T KOG1992|consen 199 AAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEE---------------------A 257 (960)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCccc---------------------c
Confidence 221111122111 11 112366677777888889999998863211111100 0
Q ss_pred cccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhc-----ccchhHHHHHHHHHHHHHHHhcccCccccCC---
Q 000934 340 DASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFK-----EREENVKMDVFNTFIELVRQTGNVTKGQIDN--- 411 (1219)
Q Consensus 340 D~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~-----d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~--- 411 (1219)
..--++|..-|+...-....+++.+.++...++...-..+. .+-+.....+++.+..+.+...-. .--.+.
T Consensus 258 ~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~-~~F~~~~vl 336 (960)
T KOG1992|consen 258 TVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYA-ELFEGENVL 336 (960)
T ss_pred cHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhH-hhhcchHHH
Confidence 01126777777777777777777666655555432211122 122334445566666665432100 000000
Q ss_pred ---------CCCChhHHHHHHH-HHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHH-hhcCC
Q 000934 412 ---------NELNPRWLLKQEV-SKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEK-SLNDK 480 (1219)
Q Consensus 412 ---------~~~~~~~~L~~~~-p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~-~l~d~ 480 (1219)
+.-.-+..-.+.. ..-+..+.+-+.+.+..+|.-+|+.+++.|+..+.+....-+...+..++. ..+++
T Consensus 337 ~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nP 416 (960)
T KOG1992|consen 337 AQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNP 416 (960)
T ss_pred HHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCC
Confidence 0000000001111 112345666677777666647788999999998765554444444444443 23344
Q ss_pred CCcchhHHHHHHHHHHHhcc-----CCCC------Cchh-hhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcc
Q 000934 481 SSTSNLKIEALTFTRLVLSS-----HSPP------VFHP-YIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVE 548 (1219)
Q Consensus 481 ~~~~~~~~~al~~l~~l~~~-----~~~~------~~~~-~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~ 548 (1219)
+.++.-+-.++.++..+... |+.. .... +...+.|.+...=...++-+++.|++-+-.+-..
T Consensus 417 S~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~q------ 490 (960)
T KOG1992|consen 417 SGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQ------ 490 (960)
T ss_pred CccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeeccc------
Confidence 43344344455555555321 1111 1122 3456666666533344555666665543333222
Q ss_pred CCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcc---------cccchhhhHHHHHHHhhcCCc--h
Q 000934 549 GLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD---------NLGAELPACLPVLVDRMGNEI--T 617 (1219)
Q Consensus 549 ~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~---------~l~~~~~~~l~~L~~~L~~e~--~ 617 (1219)
--.+++..+++.++..|... ..-|-.-|..|+..+....+. .+.|++..++.-+.+.++-.. -
T Consensus 491 ----l~~~~lm~~~p~li~~L~a~--s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~E 564 (960)
T KOG1992|consen 491 ----LGKEHLMALLPRLIRFLEAE--SRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAE 564 (960)
T ss_pred ----CChHHHHHHHHHHHHhccCc--chHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccc
Confidence 23467888888888887643 244556677777666554432 344555555555555443211 1
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHhCCCCCcchH----HHHHH
Q 000934 618 RLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRK-----ANRALRQATLGTMNSLVVAYGDKIGASAY----EVIIV 688 (1219)
Q Consensus 618 r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~-----~~~~lr~~al~~L~~l~~~~~~~l~~~~~----~~il~ 688 (1219)
....++++-++..-. ....-|+.+.++..|.+.+.+ +++....--+++++.++...... ++..+ ..+++
T Consensus 565 neylmKaImRii~i~-~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~-~~~~vs~~e~aL~p 642 (960)
T KOG1992|consen 565 NEYLMKAIMRIISIL-QSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKA-NPSAVSSLEEALFP 642 (960)
T ss_pred cHHHHHHHHHHHHhC-HHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHH
Confidence 233455555554211 122346667777777776642 35566777788888888766442 22222 33444
Q ss_pred HHhhhcCCCChhhhHHHHHHHHHHhhcc
Q 000934 689 ELSTLISDSDLHMTALALELCCTLMADK 716 (1219)
Q Consensus 689 ~l~~~l~~~d~~~~~~al~~l~~l~~~~ 716 (1219)
.+...++++-.....++|++++.+++.+
T Consensus 643 ~fq~Il~eDI~EfiPYvfQlla~lve~~ 670 (960)
T KOG1992|consen 643 VFQTILSEDIQEFIPYVFQLLAVLVEHS 670 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444455544557789999999999863
No 53
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.00011 Score=85.81 Aligned_cols=192 Identities=16% Similarity=0.217 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCC-chHHHHHHHHHHHhcCCCCCc
Q 000934 558 VQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE-ITRLTAVKAFAVIAASPLHID 636 (1219)
Q Consensus 558 l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e-~~r~~a~~al~~i~~s~~~~~ 636 (1219)
+..+...++..|.. .+++|.--+.++..+.......|.|++...+- +-.+. .++.-=+..|..++..
T Consensus 320 ~~~i~kaLvrLLrs---~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv----~ssDp~~vk~lKleiLs~La~e----- 387 (968)
T KOG1060|consen 320 VTKIAKALVRLLRS---NREVQYVVLQNIATISIKRPTLFEPHLKSFFV----RSSDPTQVKILKLEILSNLANE----- 387 (968)
T ss_pred HHHHHHHHHHHHhc---CCcchhhhHHHHHHHHhcchhhhhhhhhceEe----ecCCHHHHHHHHHHHHHHHhhh-----
Confidence 44455555555543 35667667777777766655555555443221 11111 1233336677777742
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHHHHHHHhhcc
Q 000934 637 LTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADK 716 (1219)
Q Consensus 637 ~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~~~~ 716 (1219)
.-+..++.++..|+.+.++.+-.+++.+|+.-+.+.+. +-+..++.|..+++..|..++..+...+..+++.
T Consensus 388 --sni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~- 459 (968)
T KOG1060|consen 388 --SNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK- 459 (968)
T ss_pred --ccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh-
Confidence 23678899999999999998888888899888877664 3456777788888888999999999999999984
Q ss_pred cCCCchhHhHhhhhHHHHHHHhhhcccchhhHHHHHHHHHHHHhhcCCChHHHHHHHhcc
Q 000934 717 RSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSS 776 (1219)
Q Consensus 717 ~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~~~l~~~~~~~~~~l~~~Ll~~ 776 (1219)
+|. -..+++..+.+++.+-. ...+-..+..+++..+...+...++++..+...
T Consensus 460 --~p~----~h~~ii~~La~lldti~-vp~ARA~IiWLige~~e~vpri~PDVLR~laks 512 (968)
T KOG1060|consen 460 --DPA----EHLEILFQLARLLDTIL-VPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKS 512 (968)
T ss_pred --ChH----HHHHHHHHHHHHhhhhh-hhhhhceeeeeehhhhhhcchhchHHHHHHHHh
Confidence 443 23346666666664332 334445566777777766555566666655443
No 54
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=0.00049 Score=81.08 Aligned_cols=426 Identities=16% Similarity=0.189 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhh
Q 000934 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLA 121 (1219)
Q Consensus 42 ~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~ 121 (1219)
+..--+.+.+-+-|+.+|.-|...|...+|.+.. ++-...+.+..-..+...++-+|.-|.+|+-.++...|.
T Consensus 103 dvllLltNslknDL~s~nq~vVglAL~alg~i~s---~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~---- 175 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICS---PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD---- 175 (866)
T ss_pred HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCC---HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch----
Confidence 3345577888889999999999999999998864 444455555555555567777899999999988876664
Q ss_pred HHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcC---------------ChHHH
Q 000934 122 QSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSA---------------NQASV 186 (1219)
Q Consensus 122 ~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~---------------~~~~v 186 (1219)
....++|.....+.+. +..|-..++.++.++++.-...+. ++..+.+-+...|++ ++|=+
T Consensus 176 --l~e~f~~~~~~lL~ek--~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFL 250 (866)
T KOG1062|consen 176 --LVEHFVIAFRKLLCEK--HHGVLIAGLHLITELCKISPDALS-YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFL 250 (866)
T ss_pred --HHHHhhHHHHHHHhhc--CCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHH
Confidence 3455666666666654 578888889999999887655553 333344444433321 13346
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCC
Q 000934 187 RKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASEN 266 (1219)
Q Consensus 187 rk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~ 266 (1219)
+-+.+..|..++..-.+ ..++|..++...-...+.+... =.+| |-+.|..+... ..
T Consensus 251 Qi~iLrlLriLGq~d~d--aSd~M~DiLaqvatntdsskN~------GnAI-----------LYE~V~TI~~I-----~~ 306 (866)
T KOG1062|consen 251 QIRILRLLRILGQNDAD--ASDLMNDILAQVATNTDSSKNA------GNAI-----------LYECVRTIMDI-----RS 306 (866)
T ss_pred HHHHHHHHHHhcCCCcc--HHHHHHHHHHHHHhcccccccc------hhHH-----------HHHHHHHHHhc-----cC
Confidence 66666666666654332 2233444433322211100000 0011 11222222221 35
Q ss_pred ChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHH
Q 000934 267 DEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVR 346 (1219)
Q Consensus 267 d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR 346 (1219)
+..+|..|...++.|+..-.. .+|
T Consensus 307 ~~~LrvlainiLgkFL~n~d~--------------------------------------------------------Nir 330 (866)
T KOG1062|consen 307 NSGLRVLAINILGKFLLNRDN--------------------------------------------------------NIR 330 (866)
T ss_pred CchHHHHHHHHHHHHhcCCcc--------------------------------------------------------cee
Confidence 678999888888777644321 123
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHH
Q 000934 347 RAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSK 426 (1219)
Q Consensus 347 ~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~ 426 (1219)
-.|...|..++...|.....+-.+| +++++|.+..+|..+++....+++. +.+-.
T Consensus 331 YvaLn~L~r~V~~d~~avqrHr~tI----leCL~DpD~SIkrralELs~~lvn~---------------------~Nv~~ 385 (866)
T KOG1062|consen 331 YVALNMLLRVVQQDPTAVQRHRSTI----LECLKDPDVSIKRRALELSYALVNE---------------------SNVRV 385 (866)
T ss_pred eeehhhHHhhhcCCcHHHHHHHHHH----HHHhcCCcHHHHHHHHHHHHHHhcc---------------------ccHHH
Confidence 3455555555555554444444333 4566999999999999998888764 22455
Q ss_pred HHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCc
Q 000934 427 IVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVF 506 (1219)
Q Consensus 427 lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~ 506 (1219)
+++-+...|...+...| ..+.+-+..+++.+.+.=.-|++.++..+. .. ...++.++..-+-.++.+. +...
T Consensus 386 mv~eLl~fL~~~d~~~k-~~~as~I~~laEkfaP~k~W~idtml~Vl~----~a--G~~V~~dv~~nll~LIa~~-~~e~ 457 (866)
T KOG1062|consen 386 MVKELLEFLESSDEDFK-ADIASKIAELAEKFAPDKRWHIDTMLKVLK----TA--GDFVNDDVVNNLLRLIANA-FQEL 457 (866)
T ss_pred HHHHHHHHHHhccHHHH-HHHHHHHHHHHHhcCCcchhHHHHHHHHHH----hc--ccccchhhHHHHHHHHhcC-Ccch
Confidence 55666666665566677 777788888888865443447666654443 22 2456777666555555542 2233
Q ss_pred hhh-hhhhHHHHHHH----hcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHH
Q 000934 507 HPY-IKALSSPVLAA----VGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKEC 581 (1219)
Q Consensus 507 ~~~-l~~i~p~l~~~----l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~ 581 (1219)
+.| ..++...+... +... ....-|.+|+++.-..+-... +.......--..+...+.+.+.....+..+|.-
T Consensus 458 ~~y~~~rLy~a~~~~~~~~is~e--~l~qVa~W~IGEYGdlll~~~-~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~y 534 (866)
T KOG1062|consen 458 HEYAVLRLYLALSEDTLLDISQE--PLLQVASWCIGEYGDLLLDGA-NEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGY 534 (866)
T ss_pred hhHHHHHHHHHHhhhhhhhhhhh--hHHHHHHHHhhhhhHHhhcCc-cccCCCcCCHHHHHHHHHHHHHhccchHHHHHH
Confidence 332 33444433332 2111 223334455554432211100 001112222344555555555666667888998
Q ss_pred HHHHHHHHHHhhcc
Q 000934 582 AISCMGLVISTFGD 595 (1219)
Q Consensus 582 Ai~alg~l~~~~g~ 595 (1219)
|+.|+--+-..++.
T Consensus 535 al~Al~KLSsr~~s 548 (866)
T KOG1062|consen 535 ALTALLKLSSRFHS 548 (866)
T ss_pred HHHHHHHHHhhccc
Confidence 88888766555543
No 55
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.59 E-value=0.0022 Score=72.53 Aligned_cols=465 Identities=15% Similarity=0.161 Sum_probs=249.6
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHH--HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhc
Q 000934 169 ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL--LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFG 246 (1219)
Q Consensus 169 ~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~--~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 246 (1219)
..+.=.+.+.+++.+..+|...-.++..+.....+.+ -..+|.. +..... +..+-.++..+-.+ .+....
T Consensus 64 t~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm~tssiMkD----~~~g~~-~~~kp~AiRsL~~V---id~~tv 135 (898)
T COG5240 64 TNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMGTSSIMKD----LNGGVP-DDVKPMAIRSLFSV---IDGETV 135 (898)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhHHHHHHHHh----hccCCc-cccccHHHHHHHHh---cCcchh
Confidence 3444455677788888899888888888777665553 2333333 322221 13444444444333 332222
Q ss_pred cchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCccccccccc
Q 000934 247 PHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEE 326 (1219)
Q Consensus 247 ~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~ 326 (1219)
+.+..++. +.+- +.....|.+|+-.---+........+.++++.-.+++. ++.-||+...+.-.-.. ..
T Consensus 136 ~~~er~l~---~a~V---s~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~-l~q~p~~~~n~gy~Pn~-~~--- 204 (898)
T COG5240 136 YDFERYLN---QAFV---STSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLD-LKQFPNQHGNEGYEPNG-NP--- 204 (898)
T ss_pred hhHHHHhh---hhcc---ccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhh-HhhCcCccCCcccCCCC-Ch---
Confidence 22222211 1111 23455566554433333222223455677777777666 44567654322110000 00
Q ss_pred chhhccCCCCCCCcccHHHHH----HHHHHHHHHHhcCc---------------hhh---HHHHHHHHHHHHhhhcccch
Q 000934 327 EEDESANEYTDDEDASWKVRR----AAAKCLAALIVSRP---------------EML---SKLYEEACPKLIDRFKEREE 384 (1219)
Q Consensus 327 ~d~~~~~~~~dddD~swkVR~----~Aa~~l~~li~~~~---------------~~l---~~~~~~i~p~Li~~~~d~~~ 384 (1219)
-..|. --.--++.|| +-.+++..+..... +.+ ...+..+-|.|-.-+++.-+
T Consensus 205 -----isqYH-alGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~e 278 (898)
T COG5240 205 -----ISQYH-ALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFE 278 (898)
T ss_pred -----HHHHH-HHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcch
Confidence 00000 0000124444 22333333322210 111 12344455666555677778
Q ss_pred hHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhh
Q 000934 385 NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLAD 464 (1219)
Q Consensus 385 ~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~ 464 (1219)
.|..++.++..++....- + .+.+.+.+..+...|+......| .+|+.+|.+++-..|....-
T Consensus 279 mV~lE~Ar~v~~~~~~nv------------~-----~~~~~~~vs~L~~fL~s~rv~~r-FsA~Riln~lam~~P~kv~v 340 (898)
T COG5240 279 MVFLEAARAVCALSEENV------------G-----SQFVDQTVSSLRTFLKSTRVVLR-FSAMRILNQLAMKYPQKVSV 340 (898)
T ss_pred hhhHHHHHHHHHHHHhcc------------C-----HHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHhhCCceeee
Confidence 999998888777643210 1 24567778888888888777788 99999999999876654322
Q ss_pred hhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhcc
Q 000934 465 HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLR 544 (1219)
Q Consensus 465 ~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~ 544 (1219)
.- +.+...+.|.+ |.=+.-++..++++...+.+.. +-..+|..+.-+.|.+-.+...|++.+...+..
T Consensus 341 cN----~evEsLIsd~N-----r~IstyAITtLLKTGt~e~idr-Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~-- 408 (898)
T COG5240 341 CN----KEVESLISDEN-----RTISTYAITTLLKTGTEETIDR-LVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS-- 408 (898)
T ss_pred cC----hhHHHHhhccc-----ccchHHHHHHHHHcCchhhHHH-HHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH--
Confidence 11 22333444543 1123345566776644333332 223344555555676666777777666554321
Q ss_pred CCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCCchHHHHHHH
Q 000934 545 PSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKA 624 (1219)
Q Consensus 545 ~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~a 624 (1219)
.... ++..+.+.|.+ ....+-|..++.++..++...++ .-++++..|++.+.+-.--.-+++.
T Consensus 409 --------k~~s----~l~FL~~~L~~-eGg~eFK~~~Vdaisd~~~~~p~----skEraLe~LC~fIEDcey~~I~vrI 471 (898)
T COG5240 409 --------KKLS----YLDFLGSSLLQ-EGGLEFKKYMVDAISDAMENDPD----SKERALEVLCTFIEDCEYHQITVRI 471 (898)
T ss_pred --------HHHH----HHHHHHHHHHh-cccchHHHHHHHHHHHHHhhCch----HHHHHHHHHHHHHhhcchhHHHHHH
Confidence 2222 33444444443 33567777888888877765432 3456677777776655445566777
Q ss_pred HHHHhc-CCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhhhH
Q 000934 625 FAVIAA-SPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTA 703 (1219)
Q Consensus 625 l~~i~~-s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~ 703 (1219)
|+.+.. .|....-..|+..+...+ --+|..+|.+|+.||...+.+....+.+ +.+...+..-+++.|..++.
T Consensus 472 L~iLG~EgP~a~~P~~yvrhIyNR~----iLEN~ivRsaAv~aLskf~ln~~d~~~~---~sv~~~lkRclnD~DdeVRd 544 (898)
T COG5240 472 LGILGREGPRAKTPGKYVRHIYNRL----ILENNIVRSAAVQALSKFALNISDVVSP---QSVENALKRCLNDQDDEVRD 544 (898)
T ss_pred HHHhcccCCCCCCcchHHHHHHHHH----HHhhhHHHHHHHHHHHHhccCccccccH---HHHHHHHHHHhhcccHHHHH
Confidence 777662 111112255665554433 3467789999999999998876654444 44555566778888888887
Q ss_pred HHHHHHHHH
Q 000934 704 LALELCCTL 712 (1219)
Q Consensus 704 ~al~~l~~l 712 (1219)
-|-..+..+
T Consensus 545 rAsf~l~~~ 553 (898)
T COG5240 545 RASFLLRNM 553 (898)
T ss_pred HHHHHHHhh
Confidence 665555443
No 56
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.59 E-value=0.0048 Score=74.07 Aligned_cols=193 Identities=16% Similarity=0.217 Sum_probs=131.2
Q ss_pred HHHHHHHHHhhhccCCCCC---ccchHHHHHHhcCCCchhHhHHHHHHHHhhhh---------cCc-----------ccc
Q 000934 832 QHLALLCLGEIGRRKDLSS---HEHIENVIIESFQSPFEEIKSAASYALGNIAV---------GNL-----------SKF 888 (1219)
Q Consensus 832 ~~laL~~Lgeig~~~~~~~---~~~l~~~ll~~l~~~~e~vR~aAa~aLG~l~~---------~~~-----------~~~ 888 (1219)
+..++..+.++++..-+.. ...+...++..+.+ +++-..|+.++.-+.. ++. ...
T Consensus 791 s~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~i 868 (1030)
T KOG1967|consen 791 SEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDI 868 (1030)
T ss_pred hhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhh
Confidence 4456666666654321111 13456667777764 5566677777765552 221 234
Q ss_pred hHHHHHHhcccc-chhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchHhHHHHHHhhhhccCc----
Q 000934 889 LPFILDQIDNQQ-KKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEP---- 963 (1219)
Q Consensus 889 lp~il~~l~~~~-~~~~~~l~alkeii~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~e~~r~~~ae~LG~l~~~~p---- 963 (1219)
.|.+.+.+.+.+ ..+..++.+|.-++.+. +.+.+.|.++.+++.|++.+..++-.+|-.+-.|+.-+....+
T Consensus 869 vP~l~~~~~t~~~~~K~~yl~~LshVl~~v---P~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 869 VPILVSKFETAPGSQKHNYLEALSHVLTNV---PKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HHHHHHHhccCCccchhHHHHHHHHHHhcC---CHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 688888888654 34667788899999876 3356778899999999999999988898778788877765443
Q ss_pred ---ccchHHHHHHhcCCC---chhhHHHHhhhHhhhccCCch-hhhhhhHhHHHHHhhccCCChHHHHHHHHH
Q 000934 964 ---AKLVPALKVRTTSSA---AFTRATVVIAIKYSIVERPEK-IDEIIFPEISSFLMLIKDQDRHVRRAAVLA 1029 (1219)
Q Consensus 964 ---~~~lp~l~~~l~~~~---~~~R~~~~~~~k~~~~~~~~~-~~~~l~~~i~~~l~~l~D~~~~vR~~a~~~ 1029 (1219)
.+++|.+..+-++.+ -.+|-.+++.+..+....+.. ..++-+.++..+.+.|+|+-.-||.-|..+
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 378888887765544 468888888887666545432 334455667778888999988899877764
No 57
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.56 E-value=1.7e-06 Score=93.23 Aligned_cols=182 Identities=14% Similarity=0.242 Sum_probs=128.1
Q ss_pred cccHHHHHHHHHHHHHHHhcC-----chhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCC
Q 000934 340 DASWKVRRAAAKCLAALIVSR-----PEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNEL 414 (1219)
Q Consensus 340 D~swkVR~~Aa~~l~~li~~~-----~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~ 414 (1219)
+..|+.|..|..-|..++... ++.+...+..+++.+...+.+..-.|...++.++..+....+.
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~----------- 86 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS----------- 86 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG-----------
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH-----------
Confidence 456999999999999998877 2333334555557777788777777888899999999988752
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhh-hHhHHHhhcCCCCcchhHHHHHHH
Q 000934 415 NPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSL-IPGIEKSLNDKSSTSNLKIEALTF 493 (1219)
Q Consensus 415 ~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l-~~~l~~~l~d~~~~~~~~~~al~~ 493 (1219)
.+..+.+.+++.+.+.+.+++.-++ ..+..+|..++...+ +.+.+ .+.+...+++++ +.+|..++.+
T Consensus 87 ----~~~~~~~~~l~~Ll~~~~~~~~~i~-~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn--~~vR~~~~~~ 154 (228)
T PF12348_consen 87 ----HFEPYADILLPPLLKKLGDSKKFIR-EAANNALDAIIESCS-----YSPKILLEILSQGLKSKN--PQVREECAEW 154 (228)
T ss_dssp ----GGHHHHHHHHHHHHHGGG---HHHH-HHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S---HHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHccccHHHH-HHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCC--HHHHHHHHHH
Confidence 3566788889999999988877788 889999999998643 23344 666667777765 7899999999
Q ss_pred HHHHhccCC--CCCchh--hhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhcc
Q 000934 494 TRLVLSSHS--PPVFHP--YIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLR 544 (1219)
Q Consensus 494 l~~l~~~~~--~~~~~~--~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~ 544 (1219)
+..++..++ ...+.. .++.+.+.+..++.|++++||..|-.++..+.+..+
T Consensus 155 l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 155 LAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 999999887 344544 468999999999999999999999999999987653
No 58
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.55 E-value=2.9e-06 Score=91.48 Aligned_cols=185 Identities=17% Similarity=0.218 Sum_probs=123.5
Q ss_pred CcchhhHHHHHHHHHHhhc-CC--hhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHH
Q 000934 97 KDQHRDIASIALKTIIAEV-TT--SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLS 173 (1219)
Q Consensus 97 ~~~~r~~a~~aL~~~i~~~-~~--~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~ 173 (1219)
+.+.|.-+..-|+.++.+- +. .......++.+++.+...+.+. ...+...||.++.++....|..+.++.+.+++
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~--Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL--RSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 3344555555566555433 11 1122223445556666666654 35688999999999999999999999999999
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHH-HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh---hhhccc-
Q 000934 174 ALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKA-TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG---YRFGPH- 248 (1219)
Q Consensus 174 ~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l-~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~---~~~~~~- 248 (1219)
.++..+.++...+|..|..||..+..+++ ....+ .+.+..+..+.+ +.+|..+++.+..+....| ..+...
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn--~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKN--PQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 99999999988999999999999999987 11234 445555555544 4789999999999999888 455543
Q ss_pred -hhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhc
Q 000934 249 -LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDIS 290 (1219)
Q Consensus 249 -l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~ 290 (1219)
++.+++.+...++ |.+.++|++|.+++..+...+|+.-.
T Consensus 174 ~~~~l~~~l~~~l~---D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 174 FLKQLVKALVKLLS---DADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp HHHHHHHHHHHHHT---SS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred hHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 5889999999988 68999999999999999888885433
No 59
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.52 E-value=0.00013 Score=80.20 Aligned_cols=499 Identities=14% Similarity=0.150 Sum_probs=245.6
Q ss_pred hhhccCCChhHHHHHHHHHHHHHHHhhhh-----------hhH-------hHHHHHHHHhhhhcCCh-HHHHHHHHHHHH
Q 000934 135 GITLKDMNTEIRCECLDILCDVLHKFGNL-----------MSN-------DHERLLSALLPQLSANQ-ASVRKKSVSCIA 195 (1219)
Q Consensus 135 ~l~~~~~~~~v~~~al~~L~~l~~~~g~~-----------l~~-------~~~~l~~~ll~~l~~~~-~~vrk~a~~~l~ 195 (1219)
++++. ++..|.-++.+++.+++..... +.| ..-++..+++-.|..+. +.+-...++||+
T Consensus 55 ~lkd~--~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla 132 (728)
T KOG4535|consen 55 TLKDP--SPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLA 132 (728)
T ss_pred ecCCC--ChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 44443 4677777788887777643222 112 23445556666665433 356667789999
Q ss_pred HHHhhCCHHH-----HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccC--CCC-
Q 000934 196 SLASSLSDDL-----LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSAS--END- 267 (1219)
Q Consensus 196 ~l~~~~~~~~-----~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~--~~d- 267 (1219)
.++...+-+. +..++.++-..+++.+. .++-.++..+|.+..+.. .+|+|--.+-..++..+ .+.
T Consensus 133 ~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~--~v~vs~l~~~~~~v~t~~-----~~pei~~~~~~~~s~~n~~~~h~ 205 (728)
T KOG4535|consen 133 NLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDV--NVRVSSLTLLGAIVSTHA-----PLPEVQLLLQQPCSSSNSATPHL 205 (728)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHHhcCC-----CCHHHHHHhcCCCccccccCCCC
Confidence 9998877652 45566666666666553 577888899999887542 22333333322222111 000
Q ss_pred --hH-HHHHH-HHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccH
Q 000934 268 --EE-LREYS-LQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASW 343 (1219)
Q Consensus 268 --~e-lre~a-l~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~sw 343 (1219)
+| -++-+ --+++..-..-|+. .|--.-++..+... .|.-..+.--.-+. .-.-++-|. . -
T Consensus 206 s~~~~~~~l~~~~~~~e~~~~~~~~-~~~~~~~i~~~~~i---~~~~~~~s~~~~~~-------~~~~~~~~~----p-s 269 (728)
T KOG4535|consen 206 SPPDWWKKLPAGPSLEETSVSSPKG-SSEPCWLIRLCISI---VVLPKEDSCSGSDA-------GSAAGSTYE----P-S 269 (728)
T ss_pred CChHHHHhcCCCchhhhhccCCccC-CCCCcceeeeeeee---eecCCccccchhhH-------HhhhcCccC----C-c
Confidence 00 00000 00011111111110 00000011111000 00000000000000 000001110 0 1
Q ss_pred HHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcc-c--CccccCCCCCChhHHH
Q 000934 344 KVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGN-V--TKGQIDNNELNPRWLL 420 (1219)
Q Consensus 344 kVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~-~--~~~~~~~~~~~~~~~L 420 (1219)
.+|-.+.+.|..+...++ ++.-++-.+.-.+-..+.+..+.+...+..++..+..+.+. . ..|++ + ..
T Consensus 270 ~~rle~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~------~--~q 340 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKA------P--DQ 340 (728)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccc------h--hh
Confidence 467666666655544332 33444445555555567788888888888888887766541 1 12222 0 11
Q ss_pred H-HHHHHHH-HHHHHHhccc-CccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHH
Q 000934 421 K-QEVSKIV-KSINRQLREK-SIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLV 497 (1219)
Q Consensus 421 ~-~~~p~lv-~~l~~~L~~~-~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l 497 (1219)
. .++.... +......=|. ....+ .+.+..+..+....-..|...-....+.......|.. ..-++.+|+..++.+
T Consensus 341 ~~~fw~~~l~~p~~~~~YDs~~~Tl~-~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~-~~lv~~aA~Ra~~Vy 418 (728)
T KOG4535|consen 341 RAPFWTMMLNGPLPRALYDSEHPTLQ-ASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSK-NRLVKAAASRALGVY 418 (728)
T ss_pred hccHHHHHccCCChhhhhhhcCCCch-hHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchH-HHHHHHHHHhhceeE
Confidence 1 1111111 0000111111 11112 2222233333221111122222233444444444432 234778888877777
Q ss_pred hccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCC-CH
Q 000934 498 LSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQ-DQ 576 (1219)
Q Consensus 498 ~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~-d~ 576 (1219)
+-+++...-.-+...-...+...+.|+...++..+..+++.+...+...-.+....-..+...++...+......+. ..
T Consensus 419 VLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~d 498 (728)
T KOG4535|consen 419 VLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKD 498 (728)
T ss_pred EeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 66554433444667777778888889888899999999998877654321100001112233333333333222222 36
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhc-------CCchHHHHHHHHHHHhcCC-CCCchhHHHHHHHHHH
Q 000934 577 EVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMG-------NEITRLTAVKAFAVIAASP-LHIDLTCVLEHVIAEL 648 (1219)
Q Consensus 577 ~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~-------~e~~r~~a~~al~~i~~s~-~~~~~~~~l~~~l~~L 648 (1219)
.||.+|.+++|.+.........+-+..+...-...+- +-.+|++++.+++++...+ .+.+-.+|.+.+.+.|
T Consensus 499 kV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L 578 (728)
T KOG4535|consen 499 KVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNAL 578 (728)
T ss_pred hhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHH
Confidence 8999999999998876643333333443333332221 2236899999999999443 3333368999999999
Q ss_pred HHHHHH-hhhHHHHHHHHHHHH
Q 000934 649 TAFLRK-ANRALRQATLGTMNS 669 (1219)
Q Consensus 649 ~~~L~~-~~~~lr~~al~~L~~ 669 (1219)
..++++ .|-.+|..|..+|..
T Consensus 579 ~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 579 TSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred HHHHHHhccceEeehhhhhhcC
Confidence 988875 355677666666554
No 60
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.52 E-value=4e-05 Score=90.12 Aligned_cols=253 Identities=17% Similarity=0.193 Sum_probs=175.0
Q ss_pred CChHHHHHHHHHHHHhcc----------Cccc--hhhHHH----HHHHHHHhhhcChhhHHHHHHHHHHHhcCCC-cchh
Q 000934 39 ADADLEVKLSNIVVQQLD----------DVAG--DVSGLA----VKCLAPLVKKVSEPRVVEMTDKLCIKLLNGK-DQHR 101 (1219)
Q Consensus 39 ~~~~~~~~v~~~ll~~L~----------D~~~--eVq~~A----~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~-~~~r 101 (1219)
++.+...++++.+...+- +.+. +.++.. ..+++.+-+.+.-+...+++..+.....+.. +..|
T Consensus 128 l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~ 207 (415)
T PF12460_consen 128 LSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSR 207 (415)
T ss_pred CCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHH
Confidence 566667777777776665 2211 223322 2344444444443466778888888876543 4467
Q ss_pred hHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcC
Q 000934 102 DIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSA 181 (1219)
Q Consensus 102 ~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~ 181 (1219)
..++..+..++...+..+. ++.++..+...+... .....+..+++++.=+.+..----.+....+.+.++..+.+
T Consensus 208 ~~~~~~la~LvNK~~~~~~----l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~ 282 (415)
T PF12460_consen 208 LAALQLLASLVNKWPDDDD----LDEFLDSLLQSISSS-EDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS 282 (415)
T ss_pred HHHHHHHHHHHcCCCChhh----HHHHHHHHHhhhccc-CCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC
Confidence 7777788888877665333 333333333333111 14556777777776554432111124566777788888877
Q ss_pred ChHHHHHHHHHHHHHHHhhC----------------CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh-h
Q 000934 182 NQASVRKKSVSCIASLASSL----------------SDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY-R 244 (1219)
Q Consensus 182 ~~~~vrk~a~~~l~~l~~~~----------------~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~-~ 244 (1219)
+.+...+..+++.+..-. .+.+|..++|.+++..+..+. +.+..++.+++.+.+..|. -
T Consensus 283 --~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~--~~k~~yL~ALs~ll~~vP~~v 358 (415)
T PF12460_consen 283 --PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD--EIKSNYLTALSHLLKNVPKSV 358 (415)
T ss_pred --hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh--hhHHHHHHHHHHHHhhCCHHH
Confidence 567888888888776541 122478899999999987664 4788899999999999995 4
Q ss_pred hccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHh
Q 000934 245 FGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEY 303 (1219)
Q Consensus 245 ~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~ 303 (1219)
+.+++++++|.+++.+. -+|.+++.++++++..++...|+.+.+|+..+++.+++.
T Consensus 359 l~~~l~~LlPLLlqsL~---~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 359 LLPELPTLLPLLLQSLS---LPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 77899999999999997 477889999999999999999999999999999998763
No 61
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=0.00011 Score=86.54 Aligned_cols=434 Identities=17% Similarity=0.172 Sum_probs=233.8
Q ss_pred HHHHHHHHHhcCC-CcchhhhhHHHHHHHhcccc-CCCChHHHHHHHHHHHHhccCc-cchhhHHHHHHHHHHhhhcChh
Q 000934 4 LQMAAILEKITGK-DKDFRYMATSDLLNELNKES-FKADADLEVKLSNIVVQQLDDV-AGDVSGLAVKCLAPLVKKVSEP 80 (1219)
Q Consensus 4 ~~l~~ll~~~~~~-d~d~R~mAl~dL~~~l~~~~-~~~~~~~~~~v~~~ll~~L~D~-~~eVq~~A~k~l~~l~~~~~~~ 80 (1219)
.-+.+||+.+++. |+-...-|+..|+..|.-.+ -.++.=..+.+++.|..+|++. |.+++++|++||..|...+|+.
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 5688999999887 88888889999998886432 1122233678999999999987 6899999999999999877763
Q ss_pred h--HH--HHHHHHHHHhcCCCcchhhHHHHHHHHH---HhhcCChhhhHHHHH--hHhHHHHHhhhccCCChhHHHHHHH
Q 000934 81 R--VV--EMTDKLCIKLLNGKDQHRDIASIALKTI---IAEVTTSSLAQSIHT--SLTPQLTKGITLKDMNTEIRCECLD 151 (1219)
Q Consensus 81 ~--~~--~l~~~L~~~~~~~~~~~r~~a~~aL~~~---i~~~~~~~~~~~~~~--~l~p~L~~~l~~~~~~~~v~~~al~ 151 (1219)
. +. ..++.|+..+.. -+.-|+|-.+|.++ -..=|. .+++ .|. ..+..+.-- .-.++..|+-
T Consensus 247 ~a~vV~~~aIPvl~~kL~~--IeyiDvAEQ~LqALE~iSR~H~~-----AiL~AG~l~-a~LsylDFF--Si~aQR~Ala 316 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLT--IEYIDVAEQSLQALEKISRRHPK-----AILQAGALS-AVLSYLDFF--SIHAQRVALA 316 (1051)
T ss_pred hheeecccchHHHHHhhhh--hhhhHHHHHHHHHHHHHHhhccH-----HHHhcccHH-HHHHHHHHH--HHHHHHHHHH
Confidence 2 11 134444443321 12345555555432 211111 1111 011 111111111 2457777888
Q ss_pred HHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCC--HHHHH-----HHHHHHHHHhhc--CCC
Q 000934 152 ILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS--DDLLA-----KATIEVVRNLRS--KGA 222 (1219)
Q Consensus 152 ~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~--~~~~~-----~l~~~ll~~l~~--~~~ 222 (1219)
+....+......=-.+..+.++.|.+.|+..+...-..++.|+..++..+. .+.++ .++..+.+.+.- +..
T Consensus 317 iaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~L 396 (1051)
T KOG0168|consen 317 IAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTIL 396 (1051)
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccc
Confidence 888777776554334567788888899988888888888888888876542 22233 344444444322 222
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhccch-hhhHHHHHHhhhccCC-C----ChHHHHHHHHHHHHHHHhCchhhcccHHHH
Q 000934 223 KPEMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASE-N----DEELREYSLQALESFLLRCPRDISSYCDEI 296 (1219)
Q Consensus 223 ~~~~~~~~i~~l~~l~~~~~~~~~~~l-~~iip~ll~~~~~~~~-~----d~elre~al~~l~~l~~~~~~~~~~~l~~i 296 (1219)
...+.-..|..+..++..+|.-|...+ ..|...+...+..... . .+-+-..--+.++.....+.=.+.++++.|
T Consensus 397 s~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i 476 (1051)
T KOG0168|consen 397 SNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGI 476 (1051)
T ss_pred cccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccce
Confidence 234555677888888888776555433 3344444333331100 0 000110011111111111111122333333
Q ss_pred HHHHHHhcccCCC--------CCCCCCC-CcccccccccchhhccCCCCCCCcccHHH-HHHHHHHHHHHHhcCchhhHH
Q 000934 297 LHLTLEYLSYDPN--------FTDNMEE-DSDDEAYEEEEEDESANEYTDDEDASWKV-RRAAAKCLAALIVSRPEMLSK 366 (1219)
Q Consensus 297 i~~~l~~l~~dpn--------~~~~~d~-d~~~~~~~~~~d~~~~~~~~dddD~swkV-R~~Aa~~l~~li~~~~~~l~~ 366 (1219)
+.+-..++.-.-| |.||--- -.. ...+--- .+ .--+|-.++-++ |+-....=..++...|+.+..
T Consensus 477 ~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~--~~~~~ri--~~-q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~ 551 (1051)
T KOG0168|consen 477 FAVDCSLIYEIVNLADELLWQWRDDRGSWHTY--TNIDSRI--IE-QINEDTGTSRKQQDKLNGSAREGLLKNQPELLQS 551 (1051)
T ss_pred eehhhhhhcccccccccccccCcccccccccc--chhhhhh--hh-hhccCcccchhhhhhcCCchhhhhhhcCHHHHHH
Confidence 3322222110001 0000000 000 0000000 00 000001111111 111112223577888999999
Q ss_pred HHHHHHHHHHhhh-cccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHH--HHHHHHHHHHhcccCccch
Q 000934 367 LYEEACPKLIDRF-KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIVKSINRQLREKSIKTK 443 (1219)
Q Consensus 367 ~~~~i~p~Li~~~-~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~--p~lv~~l~~~L~~~~~~~r 443 (1219)
+...++|+|++-+ ...+..||..++.++..++-... ...+.+.+ ..+-..+...|..++..+-
T Consensus 552 F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~--------------seli~slLk~~~vSS~lAG~lsskD~~vl 617 (1051)
T KOG0168|consen 552 FGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSN--------------SELIGSLLKNTNVSSHLAGMLSSKDLTVL 617 (1051)
T ss_pred HHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCC--------------HHHHHHHHhcchHHHHHHhhhhcCCCeeE
Confidence 9999999999887 45679999998888877764321 11233322 2223445566677777788
Q ss_pred hhHHHHHHHHHHHhcchhhhhhhh
Q 000934 444 QVGAFSVLRELVVVLPDCLADHIG 467 (1219)
Q Consensus 444 ~~~~~~~L~~L~~~~~~~l~~~~~ 467 (1219)
.+++++..-|++.+|+.|.+++.
T Consensus 618 -VgALQvAEiLmeKlpd~F~~~F~ 640 (1051)
T KOG0168|consen 618 -VGALQVAEILMEKLPDTFSPSFR 640 (1051)
T ss_pred -eehHHHHHHHHHHhHHHhhhhHh
Confidence 89999999999998888877654
No 62
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.41 E-value=0.00058 Score=92.16 Aligned_cols=567 Identities=17% Similarity=0.207 Sum_probs=290.6
Q ss_pred hhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 000934 466 IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRP 545 (1219)
Q Consensus 466 ~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~ 545 (1219)
+..-+..+..++.+.. ..-+.++...++.+.. +.|..+.|+++.++.-+...+.|+.+.++..|..++......+..
T Consensus 132 v~~~~k~~~ew~~~~~--~~~~~~a~~~~~~l~~-~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~ 208 (2341)
T KOG0891|consen 132 VDFEVKRLIEWLGERQ--EYRRLAAVLIIKELAD-NVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQ 208 (2341)
T ss_pred HHHHHHHHHHHhhhhh--hhhhHHHHHhhhhHhh-cCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhh
Confidence 3333444444443222 2345566666666644 567888999999999999999999998888777777666554322
Q ss_pred CccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHH-HhhcCCchHHHHHHH
Q 000934 546 SVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLV-DRMGNEITRLTAVKA 624 (1219)
Q Consensus 546 ~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~-~~L~~e~~r~~a~~a 624 (1219)
.. .....++++.+++.+-..+.... .. -..+.-...++.+..+..+..+...+..... ..+++...+...-..
T Consensus 209 ~~---~~~~~~~~~rcvd~~~~~l~~~~--~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~lk~~~i~~~l~~~ 282 (2341)
T KOG0891|consen 209 RE---AKLKPQWYQRCVDEARHGLSSDG--VK-IHASLLVYNELLRISDPFLEKYDSTCVRQAKGKLLKSIVIRMTLSQI 282 (2341)
T ss_pred cc---chhhhHHHHHHHHhccccccchH--HH-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccHHHHHHhc
Confidence 10 11223456666655444432111 01 1122222222222221111111111111110 011111112111111
Q ss_pred HHHHhcCCCCCch-hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChh---
Q 000934 625 FAVIAASPLHIDL-TCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLH--- 700 (1219)
Q Consensus 625 l~~i~~s~~~~~~-~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~--- 700 (1219)
++..+... +.-| ..|+...+.++...++++. ..++..++.++...+..+.... ..+...+-..+...+..
T Consensus 283 ~~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~~~----~~~~~~i~~ia~al~~~~~~~~-~~~~~~i~~~~~~~~~~~~~ 356 (2341)
T KOG0891|consen 283 LPLLAAFN-PAKFQVKYLHTEMDHLLSILRKEK----TRAFVSIGEIAVALGSSMSPYL-SNILDHIRQTLPTKDLARKK 356 (2341)
T ss_pred cHHHhhhh-hhhhHHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHHHhhhhhhhhh-cchhhhhhhcchhhhHHHHh
Confidence 12222110 0011 3677777777777777444 7788888888877766543211 11222221222111211
Q ss_pred hhHHHHHHHHHHhhcccCCCchhHhHhhhhHHHHHHHhhhcccchhhHHHHHHHHHHHHhhcCCChHHHHHHHhccCCCC
Q 000934 701 MTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPS 780 (1219)
Q Consensus 701 ~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~~~l~~~~~~~~~~l~~~Ll~~~~~~ 780 (1219)
-....+.+++.++.. .+|..+. .+...++..+.... ...++..++..+++..++-...+.+.+++..+.
T Consensus 357 ~~~~~~~~~~~~~~a--~~~~~~~----~~~~~il~~~~~~~----~~~~l~e~l~~l~~rl~~l~~~i~~rll~~~~~- 425 (2341)
T KOG0891|consen 357 FEKSVFTCIGLLASA--LGPADQK----DLNKDILEQMFKCT----LSDSLLERLFILSQRIPKLGQSIQDRLLNMTSQ- 425 (2341)
T ss_pred cchhHHHHHHHHhhc--cCHHHHH----hHHHHHHHHHhcCC----chHHHHHHHHHHHHhccchhhHHHHHHHHHHHH-
Confidence 123455556655543 3443322 33333333332111 114566666667777666667777777654321
Q ss_pred CCCcchhhhhhhhhhhHhhhhhhccCccchhhHHHHHHHHhhcCCCCchHHHHHHHHHHHhhhccC-CCCCccchHHHHH
Q 000934 781 PQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRK-DLSSHEHIENVII 859 (1219)
Q Consensus 781 ~~~~~l~~~a~~~~a~~i~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~laL~~Lgeig~~~-~~~~~~~l~~~ll 859 (1219)
++...++...+. .+.+ +.-..+.. ..... +.......++..++|.+++.. ... ......+.
T Consensus 426 ----vl~~~a~~~~~~-~~vl----~~~~~p~~---~~~~~----~~~~~~~~~a~~~l~~~~~~~~~~~--~~~~~~~~ 487 (2341)
T KOG0891|consen 426 ----VLSGKAFIQPGQ-FTVL----PKLAIPKA---ILQKT----GDSTDDIQLAFKTLGGFKFSGYSLT--LFVQQCVD 487 (2341)
T ss_pred ----HHhCccccCccc-cCcc----chhcccch---hhhhc----ccccHHHHHHHHHHhhhhhhhhhHH--HHHHHHHH
Confidence 000111111111 0000 00000011 11111 112222556888899887753 221 23344456
Q ss_pred HhcCCCchhHhHHHHHHHHhhhhcCcccchHHHHHHhccccchhHHHHHHHHHHHhhc---c-ccc------------hh
Q 000934 860 ESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQ---S-VDK------------AE 923 (1219)
Q Consensus 860 ~~l~~~~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~~~~~~~l~alkeii~~~---~-~~~------------~~ 923 (1219)
.+++..++++|..|+.++..+...... +- +..-+.++.+++++... + +++ .+
T Consensus 488 ~~~~~~~~e~r~~~~l~~~~ll~~~~~--------~~----~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~ 555 (2341)
T KOG0891|consen 488 SYLEADDSEIRKNAALTCCELLKYDII--------CS----QTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNE 555 (2341)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhhh--------hh----cccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhcc
Confidence 677888999999999888876643211 00 00111112222222110 0 000 00
Q ss_pred hhhHHH--HHHHHHHHhhccCCccchHhHHHHHHhhhhccCcccchHHHHHHh---------------------------
Q 000934 924 FQDSSV--EKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRT--------------------------- 974 (1219)
Q Consensus 924 ~~~~~~--~~i~~~L~~~~~~~~e~~r~~~ae~LG~l~~~~p~~~lp~l~~~l--------------------------- 974 (1219)
.+.+.+ +.....+|....++.-+.+..+...+|+++..+|+.++|.+....
T Consensus 556 ~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i 635 (2341)
T KOG0891|consen 556 RFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELI 635 (2341)
T ss_pred chhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHH
Confidence 111211 233455677777776778888888999999999999999988853
Q ss_pred ----------------------cCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHhhccCCC-hHHHHHHHHHHH
Q 000934 975 ----------------------TSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQD-RHVRRAAVLALS 1031 (1219)
Q Consensus 975 ----------------------~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~D~~-~~vR~~a~~~L~ 1031 (1219)
.+.++.+-.+++..+.+++.-++.......+.++..|.+.++|.+ ...|++++.+++
T Consensus 636 ~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~ 715 (2341)
T KOG0891|consen 636 ISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALG 715 (2341)
T ss_pred HHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhh
Confidence 122223334445555555555554444455677888888888854 568899999999
Q ss_pred HHHhcCchhhhchh--hhhhHHHHHhhh------cccccceeee----ccCceeecccChhHHHHHHHH
Q 000934 1032 TFAHNKPNLIKGLL--PELLPLLYDQTI------VKKELIRTVD----LGPFKHTVDDGLELRKAAFEC 1088 (1219)
Q Consensus 1032 ~~~~~~p~~i~~~l--~~llp~l~~~~~------~~~elir~v~----mgpfkh~~Ddgle~Rk~a~e~ 1088 (1219)
.+...++..+.|+. |.++-.+..++. .|.+.+++.+ +.||+|+.-.+...=|+.+++
T Consensus 716 ~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~~~~~~~~~~~~~~~~~~ 784 (2341)
T KOG0891|consen 716 QLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPYKHKVTEGTSASKISSEQ 784 (2341)
T ss_pred hhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchhHHHHHhhhhhHhhhhcc
Confidence 99999999888887 567777766643 4555555543 469999887766544444443
No 63
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00045 Score=80.11 Aligned_cols=236 Identities=17% Similarity=0.282 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHHHHHHHhhcccC
Q 000934 639 CVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRS 718 (1219)
Q Consensus 639 ~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~ 718 (1219)
...+++.+.+..+|..+-..+|..|+..+-.++..++.+ +.+-.+.+..-+.++|+++..+|...+..+.+.
T Consensus 140 dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----lr~~FprL~EkLeDpDp~V~SAAV~VICELArK--- 211 (877)
T KOG1059|consen 140 DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----LRPCFPRLVEKLEDPDPSVVSAAVSVICELARK--- 211 (877)
T ss_pred hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhh---
Confidence 445667777888888888999999999999999998764 455666777888999999999999999999995
Q ss_pred CCchhHhHhhhhHHHHHHHhhhcccchhhHHHHHHHHHHHHhhcCCChHHHHHHHhccCCCCCCCcchhhhhhhhhhhHh
Q 000934 719 SPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCV 798 (1219)
Q Consensus 719 ~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~~~l~~~~~~~~~~l~~~Ll~~~~~~~~~~~l~~~a~~~~a~~i 798 (1219)
.|...- ++-|.++.++.+.. ..=.+--++.+|++++.-.|.-...+++.+.+.+... .|.+-+=.||
T Consensus 212 nPknyL----~LAP~ffkllttSs-NNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT--------~AmSLlYECv 278 (877)
T KOG1059|consen 212 NPQNYL----QLAPLFYKLLVTSS-NNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMEST--------VAMSLLYECV 278 (877)
T ss_pred CCcccc----cccHHHHHHHhccC-CCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhh--------HHHHHHHHHH
Confidence 554322 35566777765443 2233455788888887665555667777777655321 1111133577
Q ss_pred hhhhhcc---C--cc--chhhHHHHHHHHhhcCCCCchHHHHHHHHHHHhhhccCCCCCccchHHHHHHhcCCCchhHhH
Q 000934 799 AVLCLAA---G--DQ--KCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKS 871 (1219)
Q Consensus 799 ~~i~~~~---~--~~--~~~~~l~~~~~~l~~~~~~~~~~~~laL~~Lgeig~~~~~~~~~~l~~~ll~~l~~~~e~vR~ 871 (1219)
.++...+ | ++ .+.--+..+-..+. +.++..+|+.|.+++.|+...... +..-.+++++++++.++.+|.
T Consensus 279 NTVVa~s~s~g~~d~~asiqLCvqKLr~fie---dsDqNLKYlgLlam~KI~ktHp~~-Vqa~kdlIlrcL~DkD~SIRl 354 (877)
T KOG1059|consen 279 NTVVAVSMSSGMSDHSASIQLCVQKLRIFIE---DSDQNLKYLGLLAMSKILKTHPKA-VQAHKDLILRCLDDKDESIRL 354 (877)
T ss_pred HHheeehhccCCCCcHHHHHHHHHHHhhhhh---cCCccHHHHHHHHHHHHhhhCHHH-HHHhHHHHHHHhccCCchhHH
Confidence 6664431 2 11 12222333333343 246778999999999999876433 223478899999999999998
Q ss_pred HHHHHH-HhhhhcCcccchHHHHHHhccc
Q 000934 872 AASYAL-GNIAVGNLSKFLPFILDQIDNQ 899 (1219)
Q Consensus 872 aAa~aL-G~l~~~~~~~~lp~il~~l~~~ 899 (1219)
-|-.-| |.+...|+...+-.++..+...
T Consensus 355 rALdLl~gmVskkNl~eIVk~LM~~~~~a 383 (877)
T KOG1059|consen 355 RALDLLYGMVSKKNLMEIVKTLMKHVEKA 383 (877)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 887655 4555677777666666666543
No 64
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=0.02 Score=70.97 Aligned_cols=156 Identities=22% Similarity=0.312 Sum_probs=117.7
Q ss_pred hHHHHHHhcCC----CchhHhHHHHHHHHhhhhcCcccchHHHHHHhccccchhHHHHHHHHHHHhhccccchhhhhHHH
Q 000934 854 IENVIIESFQS----PFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSV 929 (1219)
Q Consensus 854 l~~~ll~~l~~----~~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~~~~~~~l~alkeii~~~~~~~~~~~~~~~ 929 (1219)
+.+.+.+.+.+ .+++++.||..|||+++.-+ ..|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS-----------------------------------------a~fc 958 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS-----------------------------------------AEFC 958 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh-----------------------------------------HHHH
Confidence 44555565533 35899999999999866321 1133
Q ss_pred HHHHHHHHhhcc-CCccchHhHHHHHHhhhhccCcc---cchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhh
Q 000934 930 EKILNLLFNHCE-SEEEGVRNVVAECLGKIALIEPA---KLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIF 1005 (1219)
Q Consensus 930 ~~i~~~L~~~~~-~~~e~~r~~~ae~LG~l~~~~p~---~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~ 1005 (1219)
+.-++.||..++ ++.+-+|..+.-++|-|+...|. ..-++|+..+.++++.+|.+++-.+-|++...-- -.+
T Consensus 959 es~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmi----KVK 1034 (1251)
T KOG0414|consen 959 ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMI----KVK 1034 (1251)
T ss_pred HHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhh----Hhc
Confidence 444566666665 66788999999999999998776 4457899999999999999999999998865421 144
Q ss_pred HhHHHHHhhccCCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHHHh
Q 000934 1006 PEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQ 1055 (1219)
Q Consensus 1006 ~~i~~~l~~l~D~~~~vR~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~ 1055 (1219)
..++.+..+|.|++.+||..|-.-+.-++ ++++.|...||+++.+|-+-
T Consensus 1035 Gql~eMA~cl~D~~~~IsdlAk~FF~Els-~k~n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1035 GQLSEMALCLEDPNAEISDLAKSFFKELS-SKGNTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHHhh-hcccchhhhchHHHHhhccC
Confidence 56788888999999999999999777755 45588888888888877653
No 65
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.29 E-value=6.7e-06 Score=73.50 Aligned_cols=93 Identities=25% Similarity=0.296 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHH
Q 000934 271 REYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAA 350 (1219)
Q Consensus 271 re~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa 350 (1219)
|..++.++..++..+++.+.+|+++|++.++..+. |..|+||..|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~----------------------------------D~d~rVRy~Ac 48 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFD----------------------------------DQDSRVRYYAC 48 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcC----------------------------------CCcHHHHHHHH
Confidence 67889999999999999999999999999998873 23489999999
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 000934 351 KCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELV 398 (1219)
Q Consensus 351 ~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~ 398 (1219)
++|..+....++.+-+++..+++.|.+.+.|.+++||..+ ..+..++
T Consensus 49 EaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 49 EALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 9999999988877777999999999999999999999876 4454444
No 66
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00046 Score=81.51 Aligned_cols=403 Identities=17% Similarity=0.202 Sum_probs=222.6
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhH--
Q 000934 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRV-- 82 (1219)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~-- 82 (1219)
.++.++....+++|-+|-||+-++ ..+. .+.....+.+-+.++++|.++.||..|+-|...+-.. ..+.+
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm-~~l~------v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~-~~~~~~~ 158 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTM-GCLR------VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI-DPDLVED 158 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhce-eeEe------ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC-Chhhccc
Confidence 456667777889999999998776 2222 3467889999999999999999999999999888643 33222
Q ss_pred HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhh
Q 000934 83 VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1219)
Q Consensus 83 ~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~ 162 (1219)
..+++.|...+.++++.+-..|.-||..+.+.-+. .....+.+.++-.++.++.. -....-+.+|..+.+.++.
T Consensus 159 ~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~-~~~~~l~~~~~~~lL~al~e-----c~EW~qi~IL~~l~~y~p~ 232 (734)
T KOG1061|consen 159 SGLVDALKDLLSDSNPMVVANALAALSEIHESHPS-VNLLELNPQLINKLLEALNE-----CTEWGQIFILDCLAEYVPK 232 (734)
T ss_pred cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC-CCcccccHHHHHHHHHHHHH-----hhhhhHHHHHHHHHhcCCC
Confidence 47888888888766666444444555555543332 01111223344444444432 2334455666666666555
Q ss_pred hhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000934 163 LMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD---DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSR 239 (1219)
Q Consensus 163 ~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~---~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~ 239 (1219)
.- .....+++.+.+.|.+..+.|--.+...+=.+..+..+ .++..+-+.++..+..++ +..-.++.=++-+..
T Consensus 233 d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~---e~qyvaLrNi~lil~ 308 (734)
T KOG1061|consen 233 DS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES---EIQYVALRNINLILQ 308 (734)
T ss_pred Cc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc---hhhHHHHhhHHHHHH
Confidence 32 35567888889999988887777777777777776655 345555555555444332 233233333333444
Q ss_pred Hhhhh--------hccch----------------------hhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhh
Q 000934 240 AVGYR--------FGPHL----------------------GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDI 289 (1219)
Q Consensus 240 ~~~~~--------~~~~l----------------------~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~ 289 (1219)
..|.- |-.|. +++..-+..+.. +-|.+.-+.+.++++.++....+.
T Consensus 309 ~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYat---evD~~fvrkaIraig~~aik~e~~- 384 (734)
T KOG1061|consen 309 KRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYAT---EVDVDFVRKAVRAIGRLAIKAEQS- 384 (734)
T ss_pred hChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhh---hhCHHHHHHHHHHhhhhhhhhhhh-
Confidence 44321 11221 122222222222 344555555667777666655432
Q ss_pred cccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHH
Q 000934 290 SSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYE 369 (1219)
Q Consensus 290 ~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~ 369 (1219)
+.++..++..+...-+| |-..+...+..+...+|. .|+
T Consensus 385 ----~~cv~~lLell~~~~~y----------------------------------vvqE~~vvi~dilRkyP~----~~~ 422 (734)
T KOG1061|consen 385 ----NDCVSILLELLETKVDY----------------------------------VVQEAIVVIRDILRKYPN----KYE 422 (734)
T ss_pred ----hhhHHHHHHHHhhcccc----------------------------------eeeehhHHHHhhhhcCCC----chh
Confidence 45666666665422222 122356667777777775 345
Q ss_pred HHHHHHHhhhcc-cchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHH
Q 000934 370 EACPKLIDRFKE-REENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAF 448 (1219)
Q Consensus 370 ~i~p~Li~~~~d-~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~ 448 (1219)
.+++.+-..+.. .|+.-|. ++.+++.+.. .--+..+.++..+.+.+.+... +..+
T Consensus 423 ~vv~~l~~~~~sl~epeak~----amiWilg~y~----------------~~i~~a~elL~~f~en~~dE~~----~Vql 478 (734)
T KOG1061|consen 423 SVVAILCENLDSLQEPEAKA----ALIWILGEYA----------------ERIENALELLESFLENFKDETA----EVQL 478 (734)
T ss_pred hhhhhhcccccccCChHHHH----HHHHHHhhhh----------------hccCcHHHHHHHHHhhcccchH----HHHH
Confidence 555555444321 2344444 4455554432 1122356666666676666554 4446
Q ss_pred HHHHHHHHhcchhhhhhhhhhhHhHH-HhhcCCCCcchhHHHHHHHHHHH
Q 000934 449 SVLRELVVVLPDCLADHIGSLIPGIE-KSLNDKSSTSNLKIEALTFTRLV 497 (1219)
Q Consensus 449 ~~L~~L~~~~~~~l~~~~~~l~~~l~-~~l~d~~~~~~~~~~al~~l~~l 497 (1219)
.+|...+..+...-. .-+.++..++ .+..|.+ ++.+|-.++..-+.+
T Consensus 479 ~LLta~ik~Fl~~p~-~tq~~l~~vL~~~~~d~~-~~dlrDr~l~Y~RlL 526 (734)
T KOG1061|consen 479 ELLTAAIKLFLKKPT-ETQELLQGVLPLATADTD-NPDLRDRGLIYWRLL 526 (734)
T ss_pred HHHHHHHHHHhcCCc-cHHHHHHHHHhhhhcccc-ChhhhhhHHHHHHHh
Confidence 667666654321111 2223333333 2334433 356776666554444
No 67
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00013 Score=77.54 Aligned_cols=343 Identities=18% Similarity=0.194 Sum_probs=189.6
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhcc-ccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHH-
Q 000934 6 MAAILEKITGKDKDFRYMATSDLLNELNK-ESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV- 83 (1219)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~-~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~- 83 (1219)
+..++--+++.||.+.-.|...|-+.-.. +.--+ -..-.-++.|+.....++.+||..|++|+..|+.. .+....
T Consensus 87 ~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~l--iv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~ki 163 (550)
T KOG4224|consen 87 NEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGL--IVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKI 163 (550)
T ss_pred hhHHHHHHhCcchhhhhhhhhhhccceeccCCceE--EEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhh
Confidence 33445556777888777777666433211 11000 00001234466677788999999999999999864 221110
Q ss_pred H---HHHHHHHHhcCCCc-chhhHHHHHHHHHHhhcCCh--hhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 000934 84 E---MTDKLCIKLLNGKD-QHRDIASIALKTIIAEVTTS--SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1219)
Q Consensus 84 ~---l~~~L~~~~~~~~~-~~r~~a~~aL~~~i~~~~~~--~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~ 157 (1219)
. -+.-|.. +.+.++ .++.-+.-+|- ++... .-..-+..--+|.|...+... +..++.+++..++.+.
T Consensus 164 A~sGaL~pltr-LakskdirvqrnatgaLl----nmThs~EnRr~LV~aG~lpvLVsll~s~--d~dvqyycttaisnIa 236 (550)
T KOG4224|consen 164 ARSGALEPLTR-LAKSKDIRVQRNATGALL----NMTHSRENRRVLVHAGGLPVLVSLLKSG--DLDVQYYCTTAISNIA 236 (550)
T ss_pred hhccchhhhHh-hcccchhhHHHHHHHHHH----HhhhhhhhhhhhhccCCchhhhhhhccC--ChhHHHHHHHHhhhhh
Confidence 0 0111111 112221 12222222221 11110 001111222357787777765 5899999999988775
Q ss_pred H--HhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH--H-HHHHHHHHHHHhhcCCCChHHHHHHHH
Q 000934 158 H--KFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD--L-LAKATIEVVRNLRSKGAKPEMIRTNIQ 232 (1219)
Q Consensus 158 ~--~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~--~-~~~l~~~ll~~l~~~~~~~~~~~~~i~ 232 (1219)
- +.-+.+.+..|.+++.+.....++++.++-.|..+|+.++.--... . -..-+|.+++.++++-. ...-..+.
T Consensus 237 Vd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~--plilasVa 314 (550)
T KOG4224|consen 237 VDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMG--PLILASVA 314 (550)
T ss_pred hhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcch--hHHHHHHH
Confidence 3 3344566667889999999999999999999999999988532221 1 12346778888877654 23445566
Q ss_pred HHHHHHHHhhhh----hccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHH-HHHHHHHHhcccC
Q 000934 233 MVGALSRAVGYR----FGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD-EILHLTLEYLSYD 307 (1219)
Q Consensus 233 ~l~~l~~~~~~~----~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~-~ii~~~l~~l~~d 307 (1219)
|+..|+-.-+.. =.-|+..++.. +.. .+.+|+.=.|..++..++.+.-...+.+.+ ..++.+...+.
T Consensus 315 CIrnisihplNe~lI~dagfl~pLVrl----L~~--~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~l-- 386 (550)
T KOG4224|consen 315 CIRNISIHPLNEVLIADAGFLRPLVRL----LRA--GDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLL-- 386 (550)
T ss_pred HHhhcccccCcccceecccchhHHHHH----Hhc--CCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHh--
Confidence 665555432211 01134444433 332 356778878888888887755443333322 23444444432
Q ss_pred CCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHH
Q 000934 308 PNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVK 387 (1219)
Q Consensus 308 pn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr 387 (1219)
|.+-.||.--..|+..+.-..-+.....-..++|.||....+..++||
T Consensus 387 --------------------------------D~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~ 434 (550)
T KOG4224|consen 387 --------------------------------DGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVR 434 (550)
T ss_pred --------------------------------cCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhc
Confidence 112234444444455554332222222223467777777777788999
Q ss_pred HHHHHHHHHHHHH
Q 000934 388 MDVFNTFIELVRQ 400 (1219)
Q Consensus 388 ~~~~~~l~~l~~~ 400 (1219)
-.+..+++.+...
T Consensus 435 gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 435 GNAAAALINLSSD 447 (550)
T ss_pred ccHHHHHHhhhhh
Confidence 8888888877543
No 68
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0051 Score=71.79 Aligned_cols=290 Identities=17% Similarity=0.220 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhh
Q 000934 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLA 121 (1219)
Q Consensus 42 ~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~ 121 (1219)
+...-+...+-+-++++|.-=-..|..+|..++ .+.-...+.+.+++.+.++.+-+|--|-..|-.++...|.
T Consensus 105 dvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fv---TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---- 177 (877)
T KOG1059|consen 105 DVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIV---TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---- 177 (877)
T ss_pred cHHHHHHHHHHHHhccCccchhhheeccccccc---CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH----
Confidence 444445555556666665544566766666554 4556678888999999888888898888888888876654
Q ss_pred HHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCC--hHHHHHHHHHHHHHHHh
Q 000934 122 QSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSAN--QASVRKKSVSCIASLAS 199 (1219)
Q Consensus 122 ~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~--~~~vrk~a~~~l~~l~~ 199 (1219)
-++...|+|.+.+.++ ++.|...|+.++.+|+++.+...-+ +-+.++..+... +|.+ -+-+..++.|..
T Consensus 178 --Alr~~FprL~EkLeDp--Dp~V~SAAV~VICELArKnPknyL~----LAP~ffkllttSsNNWmL-IKiiKLF~aLtp 248 (877)
T KOG1059|consen 178 --ALRPCFPRLVEKLEDP--DPSVVSAAVSVICELARKNPQNYLQ----LAPLFYKLLVTSSNNWVL-IKLLKLFAALTP 248 (877)
T ss_pred --hHhhhHHHHHHhccCC--CchHHHHHHHHHHHHHhhCCccccc----ccHHHHHHHhccCCCeeh-HHHHHHHhhccc
Confidence 3566789999999886 6999999999999999998775433 334444444433 3432 334667777665
Q ss_pred hCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh-hhhhccc---hhhhHHHHHHhhhccCCCChHHHHHHH
Q 000934 200 SLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV-GYRFGPH---LGDTVPVLIDYCTSASENDEELREYSL 275 (1219)
Q Consensus 200 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~-~~~~~~~---l~~iip~ll~~~~~~~~~d~elre~al 275 (1219)
+- +.+-..+++.+...+.+.. ......+|+.++.... ......| +.-.+..+-.++. +.|..++=-++
T Consensus 249 lE-PRLgKKLieplt~li~sT~----AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fie---dsDqNLKYlgL 320 (877)
T KOG1059|consen 249 LE-PRLGKKLIEPITELMESTV----AMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIE---DSDQNLKYLGL 320 (877)
T ss_pred cC-chhhhhhhhHHHHHHHhhH----HHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhh---cCCccHHHHHH
Confidence 43 3345566676666655432 2334456666555431 1111122 2233444445554 67888998889
Q ss_pred HHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHH
Q 000934 276 QALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAA 355 (1219)
Q Consensus 276 ~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~ 355 (1219)
-++.-+....|+.+..|-+-|+. .+. |.|. .+|--|..++..
T Consensus 321 lam~KI~ktHp~~Vqa~kdlIlr----cL~--------------------------------DkD~--SIRlrALdLl~g 362 (877)
T KOG1059|consen 321 LAMSKILKTHPKAVQAHKDLILR----CLD--------------------------------DKDE--SIRLRALDLLYG 362 (877)
T ss_pred HHHHHHhhhCHHHHHHhHHHHHH----Hhc--------------------------------cCCc--hhHHHHHHHHHH
Confidence 99999999999888777654443 331 1112 577778888887
Q ss_pred HHhcCchhhHHHHHHHHHHHHhhhcccc-hhHHHHHHHHHHHHHH
Q 000934 356 LIVSRPEMLSKLYEEACPKLIDRFKERE-ENVKMDVFNTFIELVR 399 (1219)
Q Consensus 356 li~~~~~~l~~~~~~i~p~Li~~~~d~~-~~Vr~~~~~~l~~l~~ 399 (1219)
++..- .+..|...|+..+-..+ ...|.+.+.-...++.
T Consensus 363 mVskk------Nl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 363 MVSKK------NLMEIVKTLMKHVEKAEGTNYRDELLTRIISICS 401 (877)
T ss_pred Hhhhh------hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 77632 23334444444442222 3566666555555544
No 69
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00025 Score=75.51 Aligned_cols=392 Identities=15% Similarity=0.138 Sum_probs=213.3
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhh-hccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCch
Q 000934 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR-FGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR 287 (1219)
Q Consensus 209 l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~-~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~ 287 (1219)
....++..++++.. ..+..+-.++|.++-..+.+ +.-.+..+=+.+++++. +..+++-.+..++.+++..-.-
T Consensus 86 s~epvl~llqs~d~--~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmt----d~vevqcnaVgCitnLaT~d~n 159 (550)
T KOG4224|consen 86 SNEPVLALLQSCDK--CIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMT----DGVEVQCNAVGCITNLATFDSN 159 (550)
T ss_pred hhhHHHHHHhCcch--hhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcC----CCcEEEeeehhhhhhhhccccc
Confidence 34445555555542 56667778888887766533 33345555667777765 5667777677777666654211
Q ss_pred hhc-ccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHH
Q 000934 288 DIS-SYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSK 366 (1219)
Q Consensus 288 ~~~-~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~ 366 (1219)
..+ .....+. .+.+.-+ +. | -+||+-|..+|..+-..+-..-.-
T Consensus 160 k~kiA~sGaL~-pltrLak----sk----------------------------d--irvqrnatgaLlnmThs~EnRr~L 204 (550)
T KOG4224|consen 160 KVKIARSGALE-PLTRLAK----SK----------------------------D--IRVQRNATGALLNMTHSRENRRVL 204 (550)
T ss_pred hhhhhhccchh-hhHhhcc----cc----------------------------h--hhHHHHHHHHHHHhhhhhhhhhhh
Confidence 000 0111111 1222211 00 0 168888888887776554322222
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhH
Q 000934 367 LYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVG 446 (1219)
Q Consensus 367 ~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~ 446 (1219)
+...-+|.|++.++..+..||..+..+++.+.-... .+..|.+.=|.+++.+...+.+.+.+++ .-
T Consensus 205 V~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-------------~Rk~Laqaep~lv~~Lv~Lmd~~s~kvk-cq 270 (550)
T KOG4224|consen 205 VHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-------------ARKILAQAEPKLVPALVDLMDDGSDKVK-CQ 270 (550)
T ss_pred hccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-------------HHHHHHhcccchHHHHHHHHhCCChHHH-HH
Confidence 334457899999988899999988877766532211 2335666679999999999999999998 54
Q ss_pred HHHHHHHHHHhcchhhhhhhhhh-----hHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHh
Q 000934 447 AFSVLRELVVVLPDCLADHIGSL-----IPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAV 521 (1219)
Q Consensus 447 ~~~~L~~L~~~~~~~l~~~~~~l-----~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l 521 (1219)
+-..|+.++.. ..|..++ +|.+.+.++++. ...-.+...+++.+. -|+-....-.-..++.+++..+
T Consensus 271 A~lALrnlasd-----t~Yq~eiv~ag~lP~lv~Llqs~~--~plilasVaCIrnis-ihplNe~lI~dagfl~pLVrlL 342 (550)
T KOG4224|consen 271 AGLALRNLASD-----TEYQREIVEAGSLPLLVELLQSPM--GPLILASVACIRNIS-IHPLNEVLIADAGFLRPLVRLL 342 (550)
T ss_pred HHHHHhhhccc-----chhhhHHHhcCCchHHHHHHhCcc--hhHHHHHHHHHhhcc-cccCcccceecccchhHHHHHH
Confidence 55577776643 1222222 466666666543 233344444554442 2321111000112333444444
Q ss_pred cCC-chHHHHHHHHHHHHHHHhccCCccCCCCCC--cccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhccccc
Q 000934 522 GER-YYKVTAEALRVCGELVRVLRPSVEGLGFDF--KPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLG 598 (1219)
Q Consensus 522 ~d~-~~~v~~~al~~l~~l~~~l~~~~~~~~~~~--~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~ 598 (1219)
.-. ..+++..|..++-++...-+... ..+ ..-++.+.. .+. |...++++.--.|++.+.-+-. .+
T Consensus 343 ~~~dnEeiqchAvstLrnLAasse~n~----~~i~esgAi~kl~e----L~l--D~pvsvqseisac~a~Lal~d~--~k 410 (550)
T KOG4224|consen 343 RAGDNEEIQCHAVSTLRNLAASSEHNV----SVIRESGAIPKLIE----LLL--DGPVSVQSEISACIAQLALNDN--DK 410 (550)
T ss_pred hcCCchhhhhhHHHHHHHHhhhhhhhh----HHHhhcCchHHHHH----HHh--cCChhHHHHHHHHHHHHHhccc--cH
Confidence 333 33588899999888875321110 000 112333333 232 5567788877777777654321 11
Q ss_pred chh--hhHHHHHHHhh--cCCchHHHHHHHHHHHhcCCCCC-ch-hHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000934 599 AEL--PACLPVLVDRM--GNEITRLTAVKAFAVIAASPLHI-DL-TCV---LEHVIAELTAFLRKANRALRQATLGTMNS 669 (1219)
Q Consensus 599 ~~~--~~~l~~L~~~L--~~e~~r~~a~~al~~i~~s~~~~-~~-~~~---l~~~l~~L~~~L~~~~~~lr~~al~~L~~ 669 (1219)
.++ ..++|+|.+-. .++..|-+|..++.++....... .+ +.| ...+=..|..++.+.+-..|..+..++..
T Consensus 411 ~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~q 490 (550)
T KOG4224|consen 411 EALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQ 490 (550)
T ss_pred HHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 111 22345554433 34567888888888776321000 00 111 12333346666677777778888777777
Q ss_pred HHHHhC
Q 000934 670 LVVAYG 675 (1219)
Q Consensus 670 l~~~~~ 675 (1219)
+++...
T Consensus 491 Lle~h~ 496 (550)
T KOG4224|consen 491 LLEDHD 496 (550)
T ss_pred HHHhCC
Confidence 776643
No 70
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.022 Score=67.77 Aligned_cols=447 Identities=13% Similarity=0.153 Sum_probs=236.6
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccch
Q 000934 170 RLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL 249 (1219)
Q Consensus 170 ~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l 249 (1219)
.+...+-+.|+++..-|---|+. .++..++.+....+.|.+...+++.+ +-+|+.|+.|.-.+.+..|.-..-|+
T Consensus 107 LltNslknDL~s~nq~vVglAL~---alg~i~s~EmardlapeVe~Ll~~~~--~~irKKA~Lca~r~irK~P~l~e~f~ 181 (866)
T KOG1062|consen 107 LLTNSLKNDLNSSNQYVVGLALC---ALGNICSPEMARDLAPEVERLLQHRD--PYIRKKAALCAVRFIRKVPDLVEHFV 181 (866)
T ss_pred HHHHHHHhhccCCCeeehHHHHH---HhhccCCHHHhHHhhHHHHHHHhCCC--HHHHHHHHHHHHHHHHcCchHHHHhh
Confidence 34455556677766555444444 44555677777778888888777754 46888888888888887776544333
Q ss_pred hhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchh---hcccHHHHHHHHHHhc--ccCCCCCCCCCCCccccccc
Q 000934 250 GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD---ISSYCDEILHLTLEYL--SYDPNFTDNMEEDSDDEAYE 324 (1219)
Q Consensus 250 ~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~---~~~~l~~ii~~~l~~l--~~dpn~~~~~d~d~~~~~~~ 324 (1219)
+.- .+.+. +-+..+--+.+..+-.++...|.. ++..++.++..+-+.. .|.|.|+
T Consensus 182 ~~~----~~lL~---ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeyd------------- 241 (866)
T KOG1062|consen 182 IAF----RKLLC---EKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYD------------- 241 (866)
T ss_pred HHH----HHHHh---hcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC-------------
Confidence 332 22232 234444444555555666655532 2223334444433332 2444332
Q ss_pred ccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCch---hhHHHHHHHHHHHHhhhcccchhHHHHH-HHHHHHHHHH
Q 000934 325 EEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPE---MLSKLYEEACPKLIDRFKEREENVKMDV-FNTFIELVRQ 400 (1219)
Q Consensus 325 ~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~---~l~~~~~~i~p~Li~~~~d~~~~Vr~~~-~~~l~~l~~~ 400 (1219)
+..-.|. | +.--..+.|+-+-...++ .+.+++..+. +-.|.+.++=.++ ++|..+++.-
T Consensus 242 ----------v~gi~dP-F-LQi~iLrlLriLGq~d~daSd~M~DiLaqva-----tntdsskN~GnAILYE~V~TI~~I 304 (866)
T KOG1062|consen 242 ----------VHGISDP-F-LQIRILRLLRILGQNDADASDLMNDILAQVA-----TNTDSSKNAGNAILYECVRTIMDI 304 (866)
T ss_pred ----------ccCCCch-H-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHH-----hcccccccchhHHHHHHHHHHHhc
Confidence 1111121 2 122234445544444442 2222222221 1134333333222 1222222211
Q ss_pred hcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCC
Q 000934 401 TGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDK 480 (1219)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~ 480 (1219)
.. .+ .|. ---++.+.+.|..++..+| ..++..|..++..-|...+.|=.. |..||+|+
T Consensus 305 ~~-----------~~---~Lr---vlainiLgkFL~n~d~Nir-YvaLn~L~r~V~~d~~avqrHr~t----IleCL~Dp 362 (866)
T KOG1062|consen 305 RS-----------NS---GLR---VLAINILGKFLLNRDNNIR-YVALNMLLRVVQQDPTAVQRHRST----ILECLKDP 362 (866)
T ss_pred cC-----------Cc---hHH---HHHHHHHHHHhcCCcccee-eeehhhHHhhhcCCcHHHHHHHHH----HHHHhcCC
Confidence 00 01 121 1225778888888888899 999999999888777766667654 45788886
Q ss_pred CCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHH
Q 000934 481 SSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQP 560 (1219)
Q Consensus 481 ~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~ 560 (1219)
. ..+|..|+.+...++... . +..++..++..+...+...+.....-+..+++.+.|. ..|.-+
T Consensus 363 D--~SIkrralELs~~lvn~~---N----v~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~--------k~W~id 425 (866)
T KOG1062|consen 363 D--VSIKRRALELSYALVNES---N----VRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPD--------KRWHID 425 (866)
T ss_pred c--HHHHHHHHHHHHHHhccc---c----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc--------chhHHH
Confidence 5 678999999998887642 3 4445555555554334445555555566666665552 123323
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccc-hhhhHHHHHHHh----hcCCchHHHHHHHHHHHh---cCC
Q 000934 561 IYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGA-ELPACLPVLVDR----MGNEITRLTAVKAFAVIA---ASP 632 (1219)
Q Consensus 561 l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~-~~~~~l~~L~~~----L~~e~~r~~a~~al~~i~---~s~ 632 (1219)
.+..++...+ .-|+......+-.++.+....... ...+.+..+... ..++..-..++++||+-. .++
T Consensus 426 tml~Vl~~aG-----~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~ 500 (866)
T KOG1062|consen 426 TMLKVLKTAG-----DFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDG 500 (866)
T ss_pred HHHHHHHhcc-----cccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcC
Confidence 3333333222 246666667777777665232222 344444444432 455566678899998643 111
Q ss_pred CC-Cch-hHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHH
Q 000934 633 LH-IDL-TCVLEHVIAELTAFLR--KANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALE 707 (1219)
Q Consensus 633 ~~-~~~-~~~l~~~l~~L~~~L~--~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~ 707 (1219)
.. .+. ..--.+++..|..++. ..+...|.-++.++..|....++. .+.++.++.+.. .+-|..+.+-+++
T Consensus 501 ~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~---~s~~~elQQRa~E 574 (866)
T KOG1062|consen 501 ANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYK---SSLDTELQQRAVE 574 (866)
T ss_pred ccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhc---ccccHHHHHHHHH
Confidence 01 110 1111345556666664 345778999999999998776653 223445544433 3334444444444
No 71
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.14 E-value=1.6e-05 Score=71.05 Aligned_cols=77 Identities=18% Similarity=0.290 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcc
Q 000934 226 MIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLS 305 (1219)
Q Consensus 226 ~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~ 305 (1219)
.|++++.++.+++...|....+|++.|+|.++..++ |+|..+|-+|.+++..++..++.++-+|+++|++.+.+.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~---D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFD---DQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 477899999999999999999999999999999998 68999999999999999999999999999999999998874
No 72
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.10 E-value=0.00015 Score=88.46 Aligned_cols=279 Identities=19% Similarity=0.189 Sum_probs=175.5
Q ss_pred hhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcCh---h----hHHHHHHHHHHH
Q 000934 20 FRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE---P----RVVEMTDKLCIK 92 (1219)
Q Consensus 20 ~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~---~----~~~~l~~~L~~~ 92 (1219)
-|.-|+.-| .++.. +.-|+..+++|++.++.++.|+..+||-+|+.+|..++.-+++ . ..+.+++.|-..
T Consensus 439 tK~~ALeLl-~~lS~--~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 439 TKLAALELL-QELST--YIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred hHHHHHHHH-HHHhh--hcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 355555444 44432 3336688999999999999999999999999999977654433 2 235667777666
Q ss_pred hcCC-CcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHH-hhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHH
Q 000934 93 LLNG-KDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTK-GITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHER 170 (1219)
Q Consensus 93 ~~~~-~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~-~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ 170 (1219)
..+. ...+|-..+..|..+..... . .-...-.+-. +|.+.. +.+ +.--.++...+..-+..
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA~------r-Fle~~q~~~~~g~~n~~-nse---------t~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTAY------R-FLELTQELRQAGMLNDP-NSE---------TAPEQNYNTELQALHHT 578 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHHH------H-HHHHHHHHHhcccccCc-ccc---------cccccccchHHHHHHHH
Confidence 6553 33455544444443322100 0 0000011111 122211 111 00001111222233455
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhh-hccc
Q 000934 171 LLSALLPQLSANQASVRKKSVSCIASLASSLSDDL-LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR-FGPH 248 (1219)
Q Consensus 171 l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~-~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~-~~~~ 248 (1219)
+-+.+...+.++.+.||+.=++.|.-|+..+++.- -+-++++++.-|.+.+| ..|...++.+..++-..|.+ ...|
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw--~LR~aFfdsI~gvsi~VG~rs~sey 656 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDW--RLRGAFFDSIVGVSIFVGWRSVSEY 656 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccH--HHHHHHHhhccceEEEEeeeeHHHH
Confidence 55666777888888999999999999998887763 33467788888877765 67777777777666666655 3433
Q ss_pred hhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccch
Q 000934 249 LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEE 328 (1219)
Q Consensus 249 l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d 328 (1219)
++|.+.+.+. |.++-+-..|++++..+++.-- .=++++-+++...+.++.| ||
T Consensus 657 ---llPLl~Q~lt---D~EE~Viv~aL~~ls~Lik~~l-l~K~~v~~i~~~v~PlL~h-PN------------------- 709 (1431)
T KOG1240|consen 657 ---LLPLLQQGLT---DGEEAVIVSALGSLSILIKLGL-LRKPAVKDILQDVLPLLCH-PN------------------- 709 (1431)
T ss_pred ---HHHHHHHhcc---CcchhhHHHHHHHHHHHHHhcc-cchHHHHHHHHhhhhheeC-ch-------------------
Confidence 6888888887 4566677889999988876532 2246778888888888874 55
Q ss_pred hhccCCCCCCCcccHHHHHHHHHHHHHHHhcCc
Q 000934 329 DESANEYTDDEDASWKVRRAAAKCLAALIVSRP 361 (1219)
Q Consensus 329 ~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~ 361 (1219)
.| ||++++..+.+......
T Consensus 710 -------------~W-IR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 710 -------------LW-IRRAVLGIIAAIARQLS 728 (1431)
T ss_pred -------------HH-HHHHHHHHHHHHHhhhh
Confidence 14 79999988888777654
No 73
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=0.051 Score=64.08 Aligned_cols=577 Identities=14% Similarity=0.148 Sum_probs=272.5
Q ss_pred chhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCC-cchhhHHHHHHHHHHhhcCC------h------h-hhHHHH
Q 000934 60 GDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGK-DQHRDIASIALKTIIAEVTT------S------S-LAQSIH 125 (1219)
Q Consensus 60 ~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~-~~~r~~a~~aL~~~i~~~~~------~------~-~~~~~~ 125 (1219)
+-++|.+...++-|.-...+..|+.....+...+.-+. ..--+.....|-.+=.++.. + . ....+.
T Consensus 104 ~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsEiad~dv~rT~eei~knnliKDaMR 183 (980)
T KOG2021|consen 104 DFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMR 183 (980)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHH
Confidence 46899999999988876667789988888877664222 11112222222222122211 0 0 111222
Q ss_pred HhHhHHHHH----hhhc-cCC-ChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Q 000934 126 TSLTPQLTK----GITL-KDM-NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLAS 199 (1219)
Q Consensus 126 ~~l~p~L~~----~l~~-~~~-~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~ 199 (1219)
+.-+|.+.+ .++. ++. ++++...++|+.+..+....-.+-. .+..++.+...+. -..+|..|+.|+-.++.
T Consensus 184 ~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIa-Nd~f~nLLy~fl~--ieelR~aac~cilaiVs 260 (980)
T KOG2021|consen 184 DNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIA-NDYFLNLLYKFLN--IEELRIAACNCILAIVS 260 (980)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhh-chhHHHHHHHHHh--HHHHHHHHHHHHHHHHh
Confidence 344555543 2221 111 5788888888888887665433321 2344455555554 34799999999987776
Q ss_pred hCCHHH-HHHHHHHHHHHh-----hcCC--CChHHH---HHHHHHHHH-----HHHH---h----hhhhccchhhhHHHH
Q 000934 200 SLSDDL-LAKATIEVVRNL-----RSKG--AKPEMI---RTNIQMVGA-----LSRA---V----GYRFGPHLGDTVPVL 256 (1219)
Q Consensus 200 ~~~~~~-~~~l~~~ll~~l-----~~~~--~~~~~~---~~~i~~l~~-----l~~~---~----~~~~~~~l~~iip~l 256 (1219)
.--+.. --.++..+.+.+ .+.+ .+.+.- ...+..+|. ..+- . ......-+-.++|++
T Consensus 261 KkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyl 340 (980)
T KOG2021|consen 261 KKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYL 340 (980)
T ss_pred cCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHH
Confidence 533321 011222221111 1111 111111 112222221 1000 0 011222345589999
Q ss_pred HHhhhccCCCChHHHHHHHHHHHHHHHh---Cc---hhhcccHHHHHHHHHHhcccCCCCCCCCC-CCcccccccccchh
Q 000934 257 IDYCTSASENDEELREYSLQALESFLLR---CP---RDISSYCDEILHLTLEYLSYDPNFTDNME-EDSDDEAYEEEEED 329 (1219)
Q Consensus 257 l~~~~~~~~~d~elre~al~~l~~l~~~---~~---~~~~~~l~~ii~~~l~~l~~dpn~~~~~d-~d~~~~~~~~~~d~ 329 (1219)
++++. +++++.....+..+...+.. .+ ..-..++..++..+.+-++|||-|..|++ .++| +|
T Consensus 341 lq~l~---~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~E------eE-- 409 (980)
T KOG2021|consen 341 LQFLN---NEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDE------EE-- 409 (980)
T ss_pred HHHhc---ccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCch------HH--
Confidence 99998 46677666666666554332 22 12335788899999999999998743322 1100 00
Q ss_pred hccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCcccc
Q 000934 330 ESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQI 409 (1219)
Q Consensus 330 ~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~ 409 (1219)
+.--.+|+.--..++++....|+.+-......+..-+...++..+..-.-++.-+..+-+.+....-..
T Consensus 410 ----------a~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~- 478 (980)
T KOG2021|consen 410 ----------AFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGL- 478 (980)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccc-
Confidence 111257888888888888888876554444444333333444444443444545555544433210000
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCC----CCcch
Q 000934 410 DNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDK----SSTSN 485 (1219)
Q Consensus 410 ~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~----~~~~~ 485 (1219)
.+..-.+...+....+.++.. ..+..+ .+ ...+-.+..+++. ..+-++-++-+|.++.++-|+ +...+
T Consensus 479 nsgd~s~~~vl~~~~~ll~ts--qv~~h~---h~-lVqLlfmE~ivRY--~kff~~esq~ip~vL~aFld~rglhn~ne~ 550 (980)
T KOG2021|consen 479 NSGDISTSQVLFLNELLLMTS--QVLAHD---HE-LVQLLFMELIVRY--NKFFSTESQKIPLVLNAFLDSRGLHNKNEN 550 (980)
T ss_pred cCccccHHHHHHHHHHHHHHc--ccccCC---ch-HHHHHHHHHHHHH--HHHHhcchhhhHHHHHHHccchhccccccc
Confidence 000111111223333332221 111111 22 3334344445542 122222223344444443322 23357
Q ss_pred hHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHH------------HHHHHHHHHHHHh--ccCCccC--
Q 000934 486 LKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVT------------AEALRVCGELVRV--LRPSVEG-- 549 (1219)
Q Consensus 486 ~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~------------~~al~~l~~l~~~--l~~~~~~-- 549 (1219)
+|..+.-++..+++... ..+-||++.|+.-+...++.+.+.+- ..-+.++|-++.. ..+...+
T Consensus 551 Vr~RawYLF~RfVKlLk-kqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay 629 (980)
T KOG2021|consen 551 VRLRAWYLFTRFVKLLK-KQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAY 629 (980)
T ss_pred cchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHH
Confidence 88888888777776533 34556777777777666632211000 0001111111100 0000000
Q ss_pred CCCCCcccHH-HHHHHHHHHhhhcCCCHHHH----HHHHHHHHHHHHhhcccc------------cchhhhHHHHHHHhh
Q 000934 550 LGFDFKPYVQ-PIYNAIMSRLTNQDQDQEVK----ECAISCMGLVISTFGDNL------------GAELPACLPVLVDRM 612 (1219)
Q Consensus 550 ~~~~~~~~l~-~l~~~ll~~l~~~d~d~~vr----~~Ai~alg~l~~~~g~~l------------~~~~~~~l~~L~~~L 612 (1219)
...-..|.+. .+...+...+. +|.+..+. ..++-++|.+.+.+...+ ...++.+++.|....
T Consensus 630 ~~~litpl~~~~~igl~~a~la-sde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~ 708 (980)
T KOG2021|consen 630 ANTLITPLILDQIIGLLFAQLA-SDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFN 708 (980)
T ss_pred HhcccChHHHHHHHHHHHHHHh-ccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhcc
Confidence 0011122222 22222222333 33332222 456677777776653322 233555566666666
Q ss_pred cCCchHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Q 000934 613 GNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYG 675 (1219)
Q Consensus 613 ~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~ 675 (1219)
++|..|.+.-..+++++.. .+.+.-|+++.++..+. .+.+..--..-+..|+.+.....
T Consensus 709 k~E~iRsavrft~hRmI~~-lg~~vlPfipklie~lL---~s~d~kEmvdfl~flsQLihkfk 767 (980)
T KOG2021|consen 709 KFENIRSAVRFTFHRMIPI-LGNKVLPFIPKLIELLL---SSTDLKEMVDFLGFLSQLIHKFK 767 (980)
T ss_pred ccchhHHHHHHHHHHHHHh-cchhhhcchHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888877777777632 12234667776665543 33333222334455555555443
No 74
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.00032 Score=82.97 Aligned_cols=219 Identities=20% Similarity=0.214 Sum_probs=158.0
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCC
Q 000934 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKG 221 (1219)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~ 221 (1219)
...++.+++..+..++++--..-.-....++.+++..+.|.++-|=-.|++++..++...++..++.+.+...+.=.++.
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~ 819 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQ 819 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCC
Confidence 46688889988998888432211124567899999999999998888999999999999999888888776665544433
Q ss_pred CChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHH
Q 000934 222 AKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTL 301 (1219)
Q Consensus 222 ~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l 301 (1219)
.+...+-+ ++++.+++..|+-+..|...++..++...+ +.|.+.|-+++..++.++.......+.++-+++..++
T Consensus 820 ~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvr---epd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il 894 (982)
T KOG4653|consen 820 TDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVR---EPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLIL 894 (982)
T ss_pred ccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcC---CchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 22223323 899999999999899999999999999888 5688899999999999988766555567777777766
Q ss_pred HhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHH----HHHh
Q 000934 302 EYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACP----KLID 377 (1219)
Q Consensus 302 ~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p----~Li~ 377 (1219)
...+- |.+.-|||+|+.++..++...+..+-+++..++- .+.+
T Consensus 895 ~l~~~---------------------------------d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~ 941 (982)
T KOG4653|consen 895 SLETT---------------------------------DGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLS 941 (982)
T ss_pred HHHcc---------------------------------CCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 65541 2245899999999999999887555554433321 1112
Q ss_pred hh-cccchhHHHHHHHHHHHHH
Q 000934 378 RF-KEREENVKMDVFNTFIELV 398 (1219)
Q Consensus 378 ~~-~d~~~~Vr~~~~~~l~~l~ 398 (1219)
.. .++++.+|..+..++..+-
T Consensus 942 ~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 942 YVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHhcCchhHHHHHHHHHHHHHH
Confidence 22 4566667776666655553
No 75
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.04 E-value=0.041 Score=61.35 Aligned_cols=532 Identities=15% Similarity=0.127 Sum_probs=244.4
Q ss_pred HhcCCCcchhhhhHHHHHHHhcc---cc-------CCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhh
Q 000934 12 KITGKDKDFRYMATSDLLNELNK---ES-------FKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR 81 (1219)
Q Consensus 12 ~~~~~d~d~R~mAl~dL~~~l~~---~~-------~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~ 81 (1219)
+|++....+|.-|+.-+..-++. .. +-.|.+. -..=..++-.|.|||+..|..|.+.+..+... .++
T Consensus 4 ~~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~-~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~g--sk~ 80 (728)
T KOG4535|consen 4 KMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPE-LGSPSLMTLTLKDPSPKTRACALQVLSAILEG--SKQ 80 (728)
T ss_pred chhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCC-CCCceeeEEecCCCChhHHHHHHHHHHHHHHh--hHH
Confidence 56777778899998776654432 21 1111100 00111233567899999999999999888742 222
Q ss_pred HHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhh
Q 000934 82 VVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1219)
Q Consensus 82 ~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g 161 (1219)
. +..-+.. ++..- .-.+.+ +. .+ ...+--.|+-.+..+. .+.+....+.+|..++.+.+
T Consensus 81 f---ls~a~~~--~~~~f-tpf~v~-~a------------~s-i~~~~r~l~~~l~~e~-~~~~~tq~~kcla~lv~~~p 139 (728)
T KOG4535|consen 81 F---LSVAEDT--SDHAF-TPFSVM-IA------------CS-IRELHRCLLLALVAES-SSQTVTQIIKCLANLVSNAP 139 (728)
T ss_pred H---HHHHhcc--CCcCC-CchHHH-HH------------HH-HHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHhcCc
Confidence 1 1111110 11100 000000 00 00 0001111222222211 34455556666666666544
Q ss_pred hh-hh-HhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhC-C-HH-----------------------HHHHH-----
Q 000934 162 NL-MS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSL-S-DD-----------------------LLAKA----- 209 (1219)
Q Consensus 162 ~~-l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~-~-~~-----------------------~~~~l----- 209 (1219)
.. +. ...-.....+-+.+.+.++.||..++..++.++..- + ++ .|+.+
T Consensus 140 ~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~ 219 (728)
T KOG4535|consen 140 YDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPS 219 (728)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCch
Confidence 32 11 233344555567788888899999999998876431 1 11 11111
Q ss_pred -HH----------------------------------HHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHH
Q 000934 210 -TI----------------------------------EVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVP 254 (1219)
Q Consensus 210 -~~----------------------------------~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip 254 (1219)
++ .....+...-..+.+|-.++|.+..+++..+-. .-|+-++..
T Consensus 220 ~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~-~~~~~~l~R 298 (728)
T KOG4535|consen 220 LEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMT-QAYLMELGR 298 (728)
T ss_pred hhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 00 011111111112367778888888888877632 445566666
Q ss_pred HHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcc--cHHHHHHHHHHhc-ccCCCCCCCCCCCcccccccccchhhc
Q 000934 255 VLIDYCTSASENDEELREYSLQALESFLLRCPRDISS--YCDEILHLTLEYL-SYDPNFTDNMEEDSDDEAYEEEEEDES 331 (1219)
Q Consensus 255 ~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~--~l~~ii~~~l~~l-~~dpn~~~~~d~d~~~~~~~~~~d~~~ 331 (1219)
.+-..+. +.++.+.+.+...++.+-.....+..| .-..+...++..+ -+.|- .
T Consensus 299 vI~~~~~---~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~---------------------~ 354 (728)
T KOG4535|consen 299 VICKCMG---EADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPL---------------------P 354 (728)
T ss_pred HHHccCC---CCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCC---------------------h
Confidence 6555555 567777777766666553322111100 0000111101111 01110 0
Q ss_pred cCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccc-hhHHHHHHHHHHHHHHHhcccCccccC
Q 000934 332 ANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKERE-ENVKMDVFNTFIELVRQTGNVTKGQID 410 (1219)
Q Consensus 332 ~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~-~~Vr~~~~~~l~~l~~~~~~~~~~~~~ 410 (1219)
+..|+..-+ ...-++|.++..+.......+.+=-++..|.....-+|.+ --||.+++++++-.+-+.+.
T Consensus 355 ~~~YDs~~~---Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~l------- 424 (728)
T KOG4535|consen 355 RALYDSEHP---TLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCL------- 424 (728)
T ss_pred hhhhhhcCC---CchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccch-------
Confidence 001111111 2233455555544332211122112234444443334443 33777777766655443221
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHH
Q 000934 411 NNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEA 490 (1219)
Q Consensus 411 ~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~a 490 (1219)
......+-.-...+...+.++....| ..++..++.+... |-+.- ++++..+
T Consensus 425 -------r~d~~fv~~aa~~il~sl~d~~ln~r-~KaawtlgnITdA-------------------L~~~~--Ps~~s~~ 475 (728)
T KOG4535|consen 425 -------RQDVIFVADAANAILMSLEDKSLNVR-AKAAWSLGNITDA-------------------LIVNM--PTPDSFQ 475 (728)
T ss_pred -------hhhHHHHHHHHHHHHHHhhhHhHhHH-HHHHHHhhhhHHH-------------------HHcCC--CCchHHH
Confidence 01112223333444455555555555 4444444443322 22211 3344444
Q ss_pred HHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhh
Q 000934 491 LTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLT 570 (1219)
Q Consensus 491 l~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~ 570 (1219)
..+.+.++.. ++.....+-.| .++|+..|++.++++.+.+.+.. .+-+..+++.-+..+.
T Consensus 476 eR~sg~ll~~------------~~~~A~~~~Ad-~dkV~~navraLgnllQvlq~i~-------~~~~~e~~~~~~~~l~ 535 (728)
T KOG4535|consen 476 ERFSGLLLLK------------MLRSAIEASAD-KDKVKSNAVRALGNLLQFLQPIE-------KPTFAEIIEESIQALI 535 (728)
T ss_pred HHHHHHHHHH------------HHHHHHHhhhh-hhhhhhHHHHHHhhHHHHHHHhh-------hccHHHHHHHHHHhcc
Confidence 4444444321 11111111112 35788888888888777664421 1223333433333322
Q ss_pred hc---CCCHHHHHHHHHHHHHHHHhhccccc--chhhhHHHHHHHhh---cCCchHHHHHHHHHHHhcCCCCCchhHHHH
Q 000934 571 NQ---DQDQEVKECAISCMGLVISTFGDNLG--AELPACLPVLVDRM---GNEITRLTAVKAFAVIAASPLHIDLTCVLE 642 (1219)
Q Consensus 571 ~~---d~d~~vr~~Ai~alg~l~~~~g~~l~--~~~~~~l~~L~~~L---~~e~~r~~a~~al~~i~~s~~~~~~~~~l~ 642 (1219)
.. .....||=+|.+++|.++++-.-.+. +--+.++++|+..+ +|=-+|..|..+|...+. +.++...++
T Consensus 536 ~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~---re~~~d~~~ 612 (728)
T KOG4535|consen 536 STVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK---REQYGDQYA 612 (728)
T ss_pred cceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC---cccchhHHh
Confidence 11 12367999999999999987533232 23455666666544 454567777777665442 334444444
Q ss_pred HHHHHHHHHHHH
Q 000934 643 HVIAELTAFLRK 654 (1219)
Q Consensus 643 ~~l~~L~~~L~~ 654 (1219)
-....+...|.+
T Consensus 613 Lsw~~lv~aLi~ 624 (728)
T KOG4535|consen 613 LSWNALVTALQK 624 (728)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 76
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.04 E-value=0.0011 Score=81.70 Aligned_cols=367 Identities=16% Similarity=0.198 Sum_probs=222.2
Q ss_pred hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh---
Q 000934 167 DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY--- 243 (1219)
Q Consensus 167 ~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~--- 243 (1219)
.--.++.....++..+.+.+|....+++..+..... ....+..+...+..... .....++.++..+....+.
T Consensus 60 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~---~~~~~e~~~~~~~~k~p--k~~~~~~~~~~~lv~~~g~p~~ 134 (815)
T KOG1820|consen 60 KNIQLLSFGLKCLDSKRVNIRDTKTQSLLRIGKLED---IKEVVEAAKALLSFKSP--KKIAAAVAAVLSLVEEFGKPKV 134 (815)
T ss_pred cceeeccchhhhcccccccccCcchhHHHHHHHhhh---hHHHHHHHHhhccccCc--hhHHHHHHHHHHHHHHhcCCCC
Confidence 334556666677777777788887887777622211 22333333333322221 2334566666666665542
Q ss_pred ---hhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHH--HHHHHHhcccCC---CCCCCCC
Q 000934 244 ---RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEI--LHLTLEYLSYDP---NFTDNME 315 (1219)
Q Consensus 244 ---~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~i--i~~~l~~l~~dp---n~~~~~d 315 (1219)
.|.++++.++ |-.+|..+.+.+..+-+.++..+.+++... ....-+.-.|-+ ..-..+.
T Consensus 135 ~~~~~~~~~~~l~-------------D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 201 (815)
T KOG1820|consen 135 PSKAFIKHVGSLA-------------DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEK 201 (815)
T ss_pred ccccccccCcccc-------------ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhcccccccccccc
Confidence 2333333333 455778888888888877777666665421 112222212211 1000000
Q ss_pred CCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHH---hcCc----hhh--HHHHHHHHHHHHhhhcccchhH
Q 000934 316 EDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALI---VSRP----EML--SKLYEEACPKLIDRFKEREENV 386 (1219)
Q Consensus 316 ~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li---~~~~----~~l--~~~~~~i~p~Li~~~~d~~~~V 386 (1219)
... .. ....++.+..|+-+..+-.-..... .+.| +.+ .++..++-|.+...+-+..|.-
T Consensus 202 ~~~-~~-----------~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~ 269 (815)
T KOG1820|consen 202 RPL-LK-----------SQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKD 269 (815)
T ss_pred ccc-cc-----------cccccccCCChhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHH
Confidence 000 00 0000000011111100000000000 0000 111 1255566677777777888999
Q ss_pred HHHHHHHHHHHHHHhc-ccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhh
Q 000934 387 KMDVFNTFIELVRQTG-NVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADH 465 (1219)
Q Consensus 387 r~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~ 465 (1219)
|.+++..+...+.... ... ..+...+...+...+.|.+..+. .-+...+..++...+..+.+|
T Consensus 270 R~Eale~l~~~l~e~~~~~~---------------~~~~~ll~~~~ki~~kDaN~~v~-~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 270 RKEALEELVAILEEAKKEIV---------------KGYTGLLGILLKIRLKDANINVV-MLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred HHHHHHHHHHHHhccccccc---------------cCcchHHHHHHHHhccCcchhHH-HHHHHHHHHHHHhcchhhHHH
Confidence 9999999888887643 100 11223333444455677777777 777888999999888888899
Q ss_pred hhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 000934 466 IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRP 545 (1219)
Q Consensus 466 ~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~ 545 (1219)
...+.|.++..+.+.. +.++-..+.++..++.++ .+..+.+.|...+++..+.++.+....++..++.+++
T Consensus 334 ~~~v~p~lld~lkekk--~~l~d~l~~~~d~~~ns~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKK--SELRDALLKALDAILNST-------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHhhcchHHHHhhhcc--HHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 9999999999999875 678888888888887643 3678899999999999999999999999999888764
Q ss_pred CccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcc
Q 000934 546 SVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD 595 (1219)
Q Consensus 546 ~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~ 595 (1219)
. ..+..-+..+.+.++... +|.+.+||.+|..++|.+...+|+
T Consensus 405 ~-----~~~~~t~~~l~p~~~~~~--~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 405 K-----TVEKETVKTLVPHLIKHI--NDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred c-----CcchhhHHHHhHHHhhhc--cCCcHHHHHHHHHHHHHHHHHhhH
Confidence 2 245667788888888765 477899999999999999999887
No 77
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.011 Score=70.21 Aligned_cols=255 Identities=18% Similarity=0.172 Sum_probs=158.2
Q ss_pred HHHHHhhhhcCC-hHHHHHHHHHHHHHHHhhCCHHH-----HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhh
Q 000934 171 LLSALLPQLSAN-QASVRKKSVSCIASLASSLSDDL-----LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR 244 (1219)
Q Consensus 171 l~~~ll~~l~~~-~~~vrk~a~~~l~~l~~~~~~~~-----~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~ 244 (1219)
-++.++..|+.. ++..+-.|+.=++.+.....++. .+.++|.++..+++... .+..-.|+.|+..++..+|..
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-FDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHhhccch
Confidence 344555566554 55666566666655554444442 57899999999988764 678889999999999999976
Q ss_pred hccchh-hhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccc
Q 000934 245 FGPHLG-DTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAY 323 (1219)
Q Consensus 245 ~~~~l~-~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~ 323 (1219)
..--+. ..||.+++-+.. -+.=++.|.+++|++.+.+.-|+.+-. -.-+..++.|+.+
T Consensus 247 ~a~vV~~~aIPvl~~kL~~--IeyiDvAEQ~LqALE~iSR~H~~AiL~--AG~l~a~LsylDF----------------- 305 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLT--IEYIDVAEQSLQALEKISRRHPKAILQ--AGALSAVLSYLDF----------------- 305 (1051)
T ss_pred hheeecccchHHHHHhhhh--hhhhHHHHHHHHHHHHHHhhccHHHHh--cccHHHHHHHHHH-----------------
Confidence 544443 478888766653 356689999999999999998864321 1223445555521
Q ss_pred cccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhc
Q 000934 324 EEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR-PEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTG 402 (1219)
Q Consensus 324 ~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~-~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~ 402 (1219)
-|-.+.|.|........... ||.+. ++-..+|.|-..|...+..+-..++-|+..++....
T Consensus 306 -----------------FSi~aQR~AlaiaaN~Cksi~sd~f~-~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 306 -----------------FSIHAQRVALAIAANCCKSIRSDEFH-FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred -----------------HHHHHHHHHHHHHHHHHhcCCCccch-HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 02356666666555555553 45444 344567888777766666666677778888887643
Q ss_pred ccCccccCCCCCChhHHHHHH-HHHHHHHHHHHhcccC----ccchhhHHHHHHHHHHHhcchhhhh-hhhhhhHhHHHh
Q 000934 403 NVTKGQIDNNELNPRWLLKQE-VSKIVKSINRQLREKS----IKTKQVGAFSVLRELVVVLPDCLAD-HIGSLIPGIEKS 476 (1219)
Q Consensus 403 ~~~~~~~~~~~~~~~~~L~~~-~p~lv~~l~~~L~~~~----~~~r~~~~~~~L~~L~~~~~~~l~~-~~~~l~~~l~~~ 476 (1219)
. +| +.|.+. -+.++..+.+.+.-.. ..+. .+.+.+|..++...|-.+.. +...|...+...
T Consensus 368 h-----------~~-~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~-~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~i 434 (1051)
T KOG0168|consen 368 H-----------GP-DKLDQLCSHDLITNIQQLLSVTPTILSNGTY-TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRI 434 (1051)
T ss_pred c-----------Ch-HHHHHHhchhHHHHHHHHHhcCcccccccch-hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHH
Confidence 2 23 233332 2666666666654321 2345 55666777776655544433 333455555555
Q ss_pred hc
Q 000934 477 LN 478 (1219)
Q Consensus 477 l~ 478 (1219)
|.
T Consensus 435 l~ 436 (1051)
T KOG0168|consen 435 LQ 436 (1051)
T ss_pred Hh
Confidence 54
No 78
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.97 E-value=0.0044 Score=74.37 Aligned_cols=158 Identities=11% Similarity=0.232 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhh
Q 000934 366 KLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQV 445 (1219)
Q Consensus 366 ~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~ 445 (1219)
.+|..+.|.+++.|.-..-.+|..-..++..++... |...+-+++|.+.+.+.+.|.-++..+| .
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~v--------------P~~vllp~~~~LlPLLLq~Ls~~D~~v~-v 927 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNV--------------PKQVLLPQFPMLLPLLLQALSMPDVIVR-V 927 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcC--------------CHHhhccchhhHHHHHHHhcCCCccchh-h
Confidence 478889999999987444556777777788887753 5556778899999999999998888898 8
Q ss_pred HHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCC-cchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCC
Q 000934 446 GAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSS-TSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGER 524 (1219)
Q Consensus 446 ~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~ 524 (1219)
..++++..+....+.-...|+..++|.++..=.+.++ ...+|..|+++++.+.+..++..+.+|-+.++.++.+.+.|+
T Consensus 928 stl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk 1007 (1030)
T KOG1967|consen 928 STLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK 1007 (1030)
T ss_pred hHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH
Confidence 8888888877766666677999999999876555433 246899999999999998888899999999999999999999
Q ss_pred chHHHHHHHHHHHH
Q 000934 525 YYKVTAEALRVCGE 538 (1219)
Q Consensus 525 ~~~v~~~al~~l~~ 538 (1219)
...||.+|.++=+.
T Consensus 1008 KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 1008 KRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHHHHhhh
Confidence 88899999887443
No 79
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.014 Score=65.67 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=110.8
Q ss_pred ccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhh---cCCchHHHHHHHHHHHhcCC
Q 000934 556 PYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRM---GNEITRLTAVKAFAVIAASP 632 (1219)
Q Consensus 556 ~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L---~~e~~r~~a~~al~~i~~s~ 632 (1219)
+.+...+..+..+. .|++..+|.-|+.++|..+.-..+....+.+..+..+...| .|+.+...++.+|..+....
T Consensus 254 ~lL~s~~~~la~ka--~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 254 GLLGSVLLSLANKA--TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccHHHHHHHHHHhc--cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 55667776666654 46677899999999999987766666666676776666655 24567778888888887554
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhc---CCCChhhhHHHHHHH
Q 000934 633 LHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLI---SDSDLHMTALALELC 709 (1219)
Q Consensus 633 ~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l---~~~d~~~~~~al~~l 709 (1219)
...++.+|+-++.-.+.++..+.+...|.+++..++.++.-.|..-.....+.+...+.+++ .++++. ...++
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~----va~AC 407 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY----VARAC 407 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChH----HHHHH
Confidence 45678999999998999999999999999999999999988876543333455665655554 344443 33445
Q ss_pred HHHhhc
Q 000934 710 CTLMAD 715 (1219)
Q Consensus 710 ~~l~~~ 715 (1219)
+..++.
T Consensus 408 r~~~~~ 413 (533)
T KOG2032|consen 408 RSELRT 413 (533)
T ss_pred HHHHHh
Confidence 555554
No 80
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.02 Score=69.50 Aligned_cols=186 Identities=19% Similarity=0.107 Sum_probs=111.2
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHH
Q 000934 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1219)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~ 84 (1219)
.++.+...+.++++-+|-||+.+|.. +. +++....+++.+.++++|+++.||+.|+-|+..+-+.-+.-..+.
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~-l~------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~ 165 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSL-LR------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHEL 165 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHh-cC------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcc
Confidence 46677778999999999999998832 22 346788999999999999999999999999999875323222233
Q ss_pred -HHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhh
Q 000934 85 -MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1219)
Q Consensus 85 -l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~ 163 (1219)
....+...+.++++.+-.-|..+|..+..+... .+...++ ..+|+|.-... ...+...-.-++..+.......
T Consensus 166 g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~-~~~~~~~-~~i~~l~~~~~----~~~~~~~~~~~le~L~~~~~~~ 239 (757)
T COG5096 166 GLIDILKELVADSDPIVIANALASLAEIDPELAH-GYSLEVI-LRIPQLDLLSL----SVSTEWLLLIILEVLTERVPTT 239 (757)
T ss_pred cHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhh-hHHHHHH-HHhhhccchhh----hhhHHHHHHHHHHHHHccCCCC
Confidence 455666666677777666677777776655111 1222211 22333321000 0001222222333343333332
Q ss_pred hhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH
Q 000934 164 MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD 204 (1219)
Q Consensus 164 l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~ 204 (1219)
-. ........+.+.+.+..+.+=+.|+..+-.+....+..
T Consensus 240 ~~-s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~ 279 (757)
T COG5096 240 PD-SAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSN 279 (757)
T ss_pred CC-cHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccc
Confidence 22 33444555556666667777677766666666555444
No 81
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.00067 Score=77.99 Aligned_cols=291 Identities=19% Similarity=0.227 Sum_probs=160.7
Q ss_pred hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh---
Q 000934 167 DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY--- 243 (1219)
Q Consensus 167 ~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~--- 243 (1219)
....+.+.+.....+.+..||+.|+.++=.|... -.+-+.++....+.+.+.. +.+|..++|++......+|.
T Consensus 195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL~~~~Y~~A~~~lsD~~--e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG--FKLSKACYSRAVKHLSDDY--EDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc--ccccHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHhcCCCccc
Confidence 3455666666777778889999999998777662 2222334444455555543 47999999999999888751
Q ss_pred hhcc---chhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccC---------C---
Q 000934 244 RFGP---HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYD---------P--- 308 (1219)
Q Consensus 244 ~~~~---~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~d---------p--- 308 (1219)
+... +.+.....+-..+. |-.-.+|=.|.++|+.|=..-.+ ++.+.+. .+.|+.+ |
T Consensus 271 ~e~~e~kl~D~aF~~vC~~v~---D~sl~VRV~AaK~lG~~~~vSee----~i~QTLd--KKlms~lRRkr~ahkrpk~l 341 (823)
T KOG2259|consen 271 RESEEEKLKDAAFSSVCRAVR---DRSLSVRVEAAKALGEFEQVSEE----IIQQTLD--KKLMSRLRRKRTAHKRPKAL 341 (823)
T ss_pred chhhhhhhHHHHHHHHHHHHh---cCceeeeehHHHHhchHHHhHHH----HHHHHHH--HHHhhhhhhhhhcccchHHH
Confidence 2222 33444444444444 34455666666666655332221 1121111 1222200 1
Q ss_pred ----CCCCCCCCCcccccccccchhhc--c----CCC-CCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHh
Q 000934 309 ----NFTDNMEEDSDDEAYEEEEEDES--A----NEY-TDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLID 377 (1219)
Q Consensus 309 ----n~~~~~d~d~~~~~~~~~~d~~~--~----~~~-~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~ 377 (1219)
.|...-.-.+|...++++++++. . +-| ..-+|.=+.||++|...++.|..++|. +-.+.+..|+.
T Consensus 342 ~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvD 417 (823)
T KOG2259|consen 342 YSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVD 417 (823)
T ss_pred HhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHH
Confidence 11100000000000000000000 0 000 011333468999999999999999996 34456678889
Q ss_pred hhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHh
Q 000934 378 RFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVV 457 (1219)
Q Consensus 378 ~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~ 457 (1219)
.|+|..+.||..++.++..+..+.. .=.++++.+ ...|.|.+.++| ++.-.+|... ..
T Consensus 418 MfNDE~~~VRL~ai~aL~~Is~~l~----------------i~eeql~~i----l~~L~D~s~dvR-e~l~elL~~~-~~ 475 (823)
T KOG2259|consen 418 MFNDEIEVVRLKAIFALTMISVHLA----------------IREEQLRQI----LESLEDRSVDVR-EALRELLKNA-RV 475 (823)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHhe----------------ecHHHHHHH----HHHHHhcCHHHH-HHHHHHHHhc-CC
Confidence 9999999999999999999877532 113455544 455677888888 7755555432 11
Q ss_pred cchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCC
Q 000934 458 LPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS 502 (1219)
Q Consensus 458 ~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~ 502 (1219)
+ . ...+...+..+...|..- +.=|-+.+.+++.+-.+|+
T Consensus 476 -~-d-~~~i~m~v~~lL~~L~ky---PqDrd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 476 -S-D-LECIDMCVAHLLKNLGKY---PQDRDEILRCMGRIGQNHR 514 (823)
T ss_pred -C-c-HHHHHHHHHHHHHHhhhC---CCCcHHHHHHHHHHhccCh
Confidence 0 0 123444455555555421 2224567777888877774
No 82
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.91 E-value=0.31 Score=67.04 Aligned_cols=535 Identities=14% Similarity=0.205 Sum_probs=275.6
Q ss_pred HHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhh-----
Q 000934 7 AAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR----- 81 (1219)
Q Consensus 7 ~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~----- 81 (1219)
..+++-. ..+..+|++|..-+++.+.......-......+++.++..+.|+++-+|-.|+-.+......++++.
T Consensus 137 k~~~ew~-~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~~~~~~ 215 (2341)
T KOG0891|consen 137 KRLIEWL-GERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQREAKLKP 215 (2341)
T ss_pred HHHHHHh-hhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhccchhhh
Confidence 3344444 6677889998888887776643333347788999999999999999999999988887665555544
Q ss_pred --HHHHHHHHHHHhcCCCcchhhHHHHHHHHH--------------------------------HhhcCC-------hhh
Q 000934 82 --VVEMTDKLCIKLLNGKDQHRDIASIALKTI--------------------------------IAEVTT-------SSL 120 (1219)
Q Consensus 82 --~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~--------------------------------i~~~~~-------~~~ 120 (1219)
+...++.--..+.++... -.++....+.+ +....+ ...
T Consensus 216 ~~~~rcvd~~~~~l~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~lk~~~i~~~l~~~~~~~~~~~~~~~ 294 (2341)
T KOG0891|consen 216 QWYQRCVDEARHGLSSDGVK-IHASLLVYNELLRISDPFLEKYDSTCVRQAKGKLLKSIVIRMTLSQILPLLAAFNPAKF 294 (2341)
T ss_pred HHHHHHHHhccccccchHHH-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccHHHHHHhccHHHhhhhhhhh
Confidence 122222111111111100 00000001100 000000 000
Q ss_pred hHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHH---HHHHHHHHHH
Q 000934 121 AQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVR---KKSVSCIASL 197 (1219)
Q Consensus 121 ~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vr---k~a~~~l~~l 197 (1219)
...+++..+-.++..+.. +...++-.++++.-..+..+.++...++..+...+....-..+ +...+|++.+
T Consensus 295 ~~~~l~~~~~~~l~~~~~------~~~~~~~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (2341)
T KOG0891|consen 295 QVKYLHTEMDHLLSILRK------EKTRAFVSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKFEKSVFTCIGLL 368 (2341)
T ss_pred HHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhcchhHHHHHHHH
Confidence 011122222222222220 1134444566666666666655555544444444433222222 2346777888
Q ss_pred HhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhc---------c-----
Q 000934 198 ASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTS---------A----- 263 (1219)
Q Consensus 198 ~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~---------~----- 263 (1219)
+...+...+..+...++..+.+.... ....+++-.++...|. -.+.+.+.++..... .
T Consensus 369 ~~a~~~~~~~~~~~~il~~~~~~~~~----~~l~e~l~~l~~rl~~----l~~~i~~rll~~~~~vl~~~a~~~~~~~~v 440 (2341)
T KOG0891|consen 369 ASALGPADQKDLNKDILEQMFKCTLS----DSLLERLFILSQRIPK----LGQSIQDRLLNMTSQVLSGKAFIQPGQFTV 440 (2341)
T ss_pred hhccCHHHHHhHHHHHHHHHhcCCch----HHHHHHHHHHHHhccc----hhhHHHHHHHHHHHHHHhCccccCccccCc
Confidence 88888888887777777777654432 2223444444444432 223333333222110 0
Q ss_pred -------------CCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhh
Q 000934 264 -------------SENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDE 330 (1219)
Q Consensus 264 -------------~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~ 330 (1219)
.+++..--..++++++.+-..-. .. ...+..++.++.
T Consensus 441 l~~~~~p~~~~~~~~~~~~~~~~a~~~l~~~~~~~~-~~----~~~~~~~~~~~~------------------------- 490 (2341)
T KOG0891|consen 441 LPKLAIPKAILQKTGDSTDDIQLAFKTLGGFKFSGY-SL----TLFVQQCVDSYL------------------------- 490 (2341)
T ss_pred cchhcccchhhhhcccccHHHHHHHHHHhhhhhhhh-hH----HHHHHHHHHHHH-------------------------
Confidence 00111112334444444432211 11 111122111111
Q ss_pred ccCCCCCCCcccHHHHHHHHHHHHHHHhcCch-------hhHHHHHHHHHHHHh-hhcccchhHHHHHHHHHHH-HHHHh
Q 000934 331 SANEYTDDEDASWKVRRAAAKCLAALIVSRPE-------MLSKLYEEACPKLID-RFKEREENVKMDVFNTFIE-LVRQT 401 (1219)
Q Consensus 331 ~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~-------~l~~~~~~i~p~Li~-~~~d~~~~Vr~~~~~~l~~-l~~~~ 401 (1219)
+.+| -.+|..++.++..++..... .+ ..+..++..+.. ...+.++.+|..++..+.. ...+
T Consensus 491 ------~~~~--~e~r~~~~l~~~~ll~~~~~~~~~~~~~~-~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~- 560 (2341)
T KOG0891|consen 491 ------EADD--SEIRKNAALTCCELLKYDIICSQTSPHAL-QVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQ- 560 (2341)
T ss_pred ------hccc--HHHHHHHHHHHHHHHhhhhhhhcccchHH-HHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhh-
Confidence 0000 04788887777666554332 11 112222222222 1366667777666555441 0000
Q ss_pred cccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCC
Q 000934 402 GNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKS 481 (1219)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~ 481 (1219)
-..|..+..+...+++.....+ ..+...++.++...|..+-+++.........-++-..
T Consensus 561 --------------------laQ~~~lr~~~~al~~~~l~~~-~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg 619 (2341)
T KOG0891|consen 561 --------------------LAQPDLLRLLFIALHDENFAIQ-ELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSG 619 (2341)
T ss_pred --------------------hcCchhHHHHHHHhhhhhhhhH-HhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcc
Confidence 1124455556666666655566 6666666666665554444555544444333333211
Q ss_pred CcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHH
Q 000934 482 STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPI 561 (1219)
Q Consensus 482 ~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l 561 (1219)
. ...+..+..-+..++.+ .+....+|++.++-.+...+++....+...++.++++++...+. ....+++.+
T Consensus 620 ~-~r~~~~~a~~~~~~i~~-~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~-------~~~~~~~~~ 690 (2341)
T KOG0891|consen 620 M-ARTKEESAKLLCELIIS-SPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGE-------EMVKWVDEL 690 (2341)
T ss_pred h-HHhHHHHHHHhhHHHHH-HHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccc-------hhhhccchH
Confidence 1 12222222223333222 23455688999999999999998889999999999999987542 344455555
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccc--hhhhHHHHHHHhhcCC---chHHHHHHHHHHH
Q 000934 562 YNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGA--ELPACLPVLVDRMGNE---ITRLTAVKAFAVI 628 (1219)
Q Consensus 562 ~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~--~~~~~l~~L~~~L~~e---~~r~~a~~al~~i 628 (1219)
+..+.+.+...+ ...-|+.|..++|.+.+..|-.+.| ..+.++..+...++-+ ..|..+++.++..
T Consensus 691 ~~~~~~~l~~~s-~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~ 761 (2341)
T KOG0891|consen 691 FSLIIKMLQDQS-SLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLL 761 (2341)
T ss_pred HHHHHHHHHHhh-hhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh
Confidence 555555554322 3556899999999999999887776 4677788877766543 3577777777743
No 83
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.90 E-value=8.4e-05 Score=76.09 Aligned_cols=134 Identities=23% Similarity=0.303 Sum_probs=103.4
Q ss_pred cchHhHHHHHHhhhhccCcc---cchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHhhccCCChH
Q 000934 945 EGVRNVVAECLGKIALIEPA---KLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRH 1021 (1219)
Q Consensus 945 e~~r~~~ae~LG~l~~~~p~---~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~D~~~~ 1021 (1219)
+.+|+.+..++|-|+...|. .++|.+...+.+++|.+|.+++..+.+++...--... ..++..++.++.|+|++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHcCCCHH
Confidence 56899999999999998887 7889999999999999999999999999976533222 24458889999999999
Q ss_pred HHHHHHHHHHHHHhc-CchhhhchhhhhhHHHHHhhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHh
Q 000934 1022 VRRAAVLALSTFAHN-KPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLD 1094 (1219)
Q Consensus 1022 vR~~a~~~L~~~~~~-~p~~i~~~l~~llp~l~~~~~~~~elir~v~mgpfkh~~Ddgle~Rk~a~e~l~~ll~ 1094 (1219)
||..|...|...... .|..+..++++++..+-..... +. | ...+.+-|+..|..|...++
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~--~~--------~---~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEH--PV--------Y---GPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCcccc--cc--------c---cccCHHHHHHHHHHHHHHcC
Confidence 999999999998887 8999988888877765542211 00 0 12445667777765555544
No 84
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.002 Score=76.56 Aligned_cols=223 Identities=16% Similarity=0.229 Sum_probs=159.5
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHH
Q 000934 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEM 85 (1219)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l 85 (1219)
+...+.-+.++-+-+|--|+..|...+.+.. +-+-....+|+...+..|.|.++-|==.|++-+..|....++ .+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----~i 803 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----DI 803 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch----hh
Confidence 4555666778888889999999988887542 112356788999999999999999999999877777665444 55
Q ss_pred HHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhh
Q 000934 86 TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS 165 (1219)
Q Consensus 86 ~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~ 165 (1219)
++.|.+.-.+.+.+.+ ++...+.+ +++..++.+.|+.+.
T Consensus 804 l~dL~e~Y~s~k~k~~---------------------------------------~d~~lkVG--Eai~k~~qa~Gel~~ 842 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQ---------------------------------------TDYRLKVG--EAILKVAQALGELVF 842 (982)
T ss_pred HHHHHHHHHhcccCCC---------------------------------------ccceehHH--HHHHHHHHHhccHHH
Confidence 6666654433332211 01112222 566677777788888
Q ss_pred HhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh
Q 000934 166 NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS---DDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG 242 (1219)
Q Consensus 166 ~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~---~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~ 242 (1219)
.|...++.+++...++|+...|..++..+|.++.... .+.|.+++..+++..+... ...+||+|++.+..+.++.|
T Consensus 843 ~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~-s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 843 KYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDG-SVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCC-chhhHHHHHHHHHHHHhccc
Confidence 8999999999999999888889999999999987654 3467777777777665543 46799999999999999999
Q ss_pred hhhcc----chhhhHHHHHHhhhccCCCChHHHHHHHHH
Q 000934 243 YRFGP----HLGDTVPVLIDYCTSASENDEELREYSLQA 277 (1219)
Q Consensus 243 ~~~~~----~l~~iip~ll~~~~~~~~~d~elre~al~~ 277 (1219)
..+.| |+-+....+..+... ++||.+|-.+-.+
T Consensus 922 ~dlLpilr~~l~Dl~~tl~~~vr~--~~dd~~klhaql~ 958 (982)
T KOG4653|consen 922 EDLLPILRLLLIDLDETLLSYVRQ--HDDDGLKLHAQLC 958 (982)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 88777 445566666676664 3555565444333
No 85
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.0017 Score=68.71 Aligned_cols=215 Identities=16% Similarity=0.176 Sum_probs=131.5
Q ss_pred hhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccC
Q 000934 61 DVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKD 140 (1219)
Q Consensus 61 eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~ 140 (1219)
+|+..|...+-++-. +...-+++|.+.+.+++-+..--+..-+|.+++.-..+++..-+-.-++|++.+.|...+
T Consensus 53 dv~e~a~ss~i~meq-----q~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q 127 (526)
T COG5064 53 DVSEEAESSFIPMEQ-----QFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQ 127 (526)
T ss_pred cccchhhhccCchhH-----HhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcc
Confidence 455555544434322 223344677766655544433445555666664322223333333457799999985433
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhh-HhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCC---HHHH-HHHHHHHHH
Q 000934 141 MNTEIRCECLDILCDVLHKFGNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS---DDLL-AKATIEVVR 215 (1219)
Q Consensus 141 ~~~~v~~~al~~L~~l~~~~g~~l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~---~~~~-~~l~~~ll~ 215 (1219)
..-.+.+|..+|..+.......-. -....-.+.+.+.|.+++..||..|+=|||.++.-.+ +-.+ ...++.++.
T Consensus 128 -~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ 206 (526)
T COG5064 128 -RDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLG 206 (526)
T ss_pred -hhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHH
Confidence 445677888888887654332211 0123456777888888889999999999999986432 2222 345666666
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHhh-hhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHh
Q 000934 216 NLRSKGAKPEMIRTNIQMVGALSRAVG-YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR 284 (1219)
Q Consensus 216 ~l~~~~~~~~~~~~~i~~l~~l~~~~~-~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~ 284 (1219)
.+.+...+-.+.+.+--+++.+||.-. .---..+...+|.+.+.+.. .|+|+---|.+|+..++..
T Consensus 207 ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys---~D~evlvDA~WAiSYlsDg 273 (526)
T COG5064 207 LLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYS---RDPEVLVDACWAISYLSDG 273 (526)
T ss_pred HHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHhccC
Confidence 665544333567788889999998531 11122567788998888873 6788877788888776544
No 86
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.81 E-value=0.028 Score=65.58 Aligned_cols=217 Identities=13% Similarity=0.128 Sum_probs=135.1
Q ss_pred hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCC--hhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 000934 80 PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT--SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1219)
Q Consensus 80 ~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~--~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~ 157 (1219)
+....++..|+..+..+.....+--..|+-.++.-+.. .+....++..++..+....++++ ++...++.++.++.++
T Consensus 22 p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPs-nP~FnHylFEsi~~li 100 (435)
T PF03378_consen 22 PFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPS-NPRFNHYLFESIGALI 100 (435)
T ss_dssp CCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchhhhHHHHHHHHH
Confidence 35677888888887654433344334444444433332 23445556666666655556655 7899999999999999
Q ss_pred HHhhhh----hhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH----HHHHHHHHHHHHhhcCCCC-hHHHH
Q 000934 158 HKFGNL----MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD----LLAKATIEVVRNLRSKGAK-PEMIR 228 (1219)
Q Consensus 158 ~~~g~~----l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~----~~~~l~~~ll~~l~~~~~~-~~~~~ 228 (1219)
+..... +....+.+.+.+...|+.+-...---+.+.++.+....+.. .+..+++.++... -|. ....-
T Consensus 101 r~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~---lWe~~gniP 177 (435)
T PF03378_consen 101 RFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA---LWERRGNIP 177 (435)
T ss_dssp HHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG---GGGSTTTHH
T ss_pred HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc---hhccCCCcC
Confidence 876542 33456777777777777654455556788899888877622 2555666665332 120 12234
Q ss_pred HHHHHHHHHHHHhhhhhc--cchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCch-hhcccHHHHHHHHHHhcc
Q 000934 229 TNIQMVGALSRAVGYRFG--PHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR-DISSYCDEILHLTLEYLS 305 (1219)
Q Consensus 229 ~~i~~l~~l~~~~~~~~~--~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~-~~~~~l~~ii~~~l~~l~ 305 (1219)
..+..+.++.+..|..+. .++..+...+-+.+.+. ..| ..++.-++.++.++|. .+.||++.|+.++++.++
T Consensus 178 alvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk--~~D---~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq 252 (435)
T PF03378_consen 178 ALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASK--AND---HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQ 252 (435)
T ss_dssp HHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-T--TCH---HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCC--Ccc---hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHh
Confidence 566678888888887764 57777777666666643 222 4588999999999997 589999999999999886
No 87
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.81 E-value=0.0018 Score=72.15 Aligned_cols=192 Identities=18% Similarity=0.167 Sum_probs=133.0
Q ss_pred hhcCCCCcchhHHHHHHHHHHHhccC-CCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCC
Q 000934 476 SLNDKSSTSNLKIEALTFTRLVLSSH-SPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDF 554 (1219)
Q Consensus 476 ~l~d~~~~~~~~~~al~~l~~l~~~~-~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~ 554 (1219)
.+.++. ...|.++|..+..++..+ .++.+..+...++..+.++++-...+-+.-|+.+++-++-.+++ +..-
T Consensus 51 ~l~eK~--~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~-----g~~~ 123 (309)
T PF05004_consen 51 LLTEKS--SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA-----GEDS 123 (309)
T ss_pred HHHhcC--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC-----CccH
Confidence 344444 567899998888777554 33444556788999999999766556667788888888777654 2345
Q ss_pred cccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhh---hHHHHHHH--hhc--C----------Cch
Q 000934 555 KPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELP---ACLPVLVD--RMG--N----------EIT 617 (1219)
Q Consensus 555 ~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~---~~l~~L~~--~L~--~----------e~~ 617 (1219)
...+..+.+.+.+.+........+|..++.|+|.+.-..+.... .+. .++..++. ..+ . ...
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~-~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEE-ETEELMESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChh-HHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 56777777777777765544567889999999988776655432 233 44442221 111 1 124
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Q 000934 618 RLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYG 675 (1219)
Q Consensus 618 r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~ 675 (1219)
..+|+.+++-++..-....+...+...++.|..+|..++..+|.+|-++|..|.+...
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 5678888888774321223567778899999999999999999999999999987654
No 88
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.034 Score=65.90 Aligned_cols=156 Identities=19% Similarity=0.306 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccC
Q 000934 185 SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSAS 264 (1219)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~ 264 (1219)
.-|+.|+.+|-.|+.-.....-..=|+++++.|+..-.+++....++.++-.+..+.. -+.++
T Consensus 38 eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd------~~~v~----------- 100 (970)
T KOG0946|consen 38 EDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD------SPEVM----------- 100 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc------chhhc-----------
Confidence 6789999999999987777666777888999998765556666666666555544321 00000
Q ss_pred CCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHH
Q 000934 265 ENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWK 344 (1219)
Q Consensus 265 ~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swk 344 (1219)
++.-..-+..++.-+.|+.. ++.+.+++.++..+ ...
T Consensus 101 dds~qsdd~g~~iae~fik~---------qd~I~lll~~~e~~----------------------------------DF~ 137 (970)
T KOG0946|consen 101 DDSTQSDDLGLWIAEQFIKN---------QDNITLLLQSLEEF----------------------------------DFH 137 (970)
T ss_pred ccchhhhHHHHHHHHHHHcC---------chhHHHHHHHHHhh----------------------------------chh
Confidence 01111223344444444433 34566677766310 138
Q ss_pred HHHHHHHHHHHHHhcCchhhHHH---HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 000934 345 VRRAAAKCLAALIVSRPEMLSKL---YEEACPKLIDRFKEREENVKMDVFNTFIELVRQ 400 (1219)
Q Consensus 345 VR~~Aa~~l~~li~~~~~~l~~~---~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~ 400 (1219)
||+.|.+++.+++.++|..+... ++.-+..|+.-++|..|.+|.+++-.+.++++.
T Consensus 138 VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~ 196 (970)
T KOG0946|consen 138 VRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKD 196 (970)
T ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHcc
Confidence 99999999999999999655542 233344555666788888888888888887764
No 89
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.79 E-value=0.0059 Score=75.25 Aligned_cols=273 Identities=17% Similarity=0.203 Sum_probs=176.7
Q ss_pred HHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccC---CCCC
Q 000934 429 KSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH---SPPV 505 (1219)
Q Consensus 429 ~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~---~~~~ 505 (1219)
....+.++. ..+| ..|+.+|..+.....+ +.-++.++|.+...+.|+. ..+|..|+..+..++... ++..
T Consensus 428 ts~IR~lk~--~~tK-~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~--a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 428 TSCIRALKT--IQTK-LAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSE--ADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred HHHHHhhhc--chhH-HHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCch--HHHHHHHHHHHHHHHhhccCCCccc
Confidence 333344443 3466 7899999988875422 3478999999999999875 689999998888876543 3333
Q ss_pred chhhhhhhHHHHHHHhcCCch-HHHHHHHHHHHHHHHh----------cc-------CCccCC-CCCCcccHHHHHHHHH
Q 000934 506 FHPYIKALSSPVLAAVGERYY-KVTAEALRVCGELVRV----------LR-------PSVEGL-GFDFKPYVQPIYNAIM 566 (1219)
Q Consensus 506 ~~~~l~~i~p~l~~~l~d~~~-~v~~~al~~l~~l~~~----------l~-------~~~~~~-~~~~~~~l~~l~~~ll 566 (1219)
-.-|.+.|+|.+-..+.|... .++..=..++..|++. ++ |..++. ...+..+++.|...+-
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~ 580 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE 580 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence 344778899999999988332 2332222333333321 11 111111 3345555555554433
Q ss_pred HHhh--hcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCCch--HHHHHHHHHHHhcCCCCCchhHHHH
Q 000934 567 SRLT--NQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEIT--RLTAVKAFAVIAASPLHIDLTCVLE 642 (1219)
Q Consensus 567 ~~l~--~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~--r~~a~~al~~i~~s~~~~~~~~~l~ 642 (1219)
+... ..|.+.-||+.-+..++.+..-+|..=+ -+-+++.|.-.|++..- |-+-...+.-++..-.....+ +
T Consensus 581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks--ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~s---e 655 (1431)
T KOG1240|consen 581 QMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS--NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVS---E 655 (1431)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc--ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHH---H
Confidence 2221 1355678999999999998887776322 23467777777766543 333333332221110011123 3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHHHHHHHhhc
Q 000934 643 HVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 715 (1219)
Q Consensus 643 ~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~~~ 715 (1219)
.++|.|.+.|.+..+.+=..++.|+..+++.. -+....+-+++..+.+++-.++.-++..++.++..+.+.
T Consensus 656 yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 656 YLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 45778888899999999999999999999763 255667889999999999999999999999999988763
No 90
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.76 E-value=0.002 Score=71.77 Aligned_cols=190 Identities=15% Similarity=0.227 Sum_probs=136.6
Q ss_pred HHHHHHHHHhcCC-CcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccC-ccchhhHHHHHHHHHHhhhcCh--
Q 000934 4 LQMAAILEKITGK-DKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD-VAGDVSGLAVKCLAPLVKKVSE-- 79 (1219)
Q Consensus 4 ~~l~~ll~~~~~~-d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D-~~~eVq~~A~k~l~~l~~~~~~-- 79 (1219)
..+..++.++++. --+-|--|+..|.+.+..+.|..=++...+++..++..|.| .+.-.+..|.+.|.++.+.-+.
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 4566777788766 55778899999999999888876677889999999999999 7888999999999999864333
Q ss_pred -hhHHHHHHHHHHHhcCCCcch-hhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 000934 80 -PRVVEMTDKLCIKLLNGKDQH-RDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1219)
Q Consensus 80 -~~~~~l~~~L~~~~~~~~~~~-r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~ 157 (1219)
+..+..+.+++....+..+.+ |.+.--+++++-...|. .-+..|.|.++. . +......++..+..++
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~-----~~I~~i~~~Ilt--~----D~~~~~~~iKm~Tkl~ 434 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL-----QCIVNISPLILT--A----DEPRAVAVIKMLTKLF 434 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch-----hHHHHHhhHHhc--C----cchHHHHHHHHHHHHH
Confidence 334455556665555554443 33444455555555543 123445566654 1 3445556666777777
Q ss_pred HHhhh-hhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH
Q 000934 158 HKFGN-LMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD 204 (1219)
Q Consensus 158 ~~~g~-~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~ 204 (1219)
++... .+....+.+.+++++..++.++.|||.|+.||-.+...+|-+
T Consensus 435 e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~ 482 (516)
T KOG2956|consen 435 ERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME 482 (516)
T ss_pred hhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence 77653 455678889999999999999999999999999888888743
No 91
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.74 E-value=0.0029 Score=70.49 Aligned_cols=211 Identities=16% Similarity=0.196 Sum_probs=146.9
Q ss_pred HHHHHHHHHHhcCC-CcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhh
Q 000934 83 VEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1219)
Q Consensus 83 ~~l~~~L~~~~~~~-~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g 161 (1219)
..++..++..+.+. ..+.+..|..-|-.+..+-++ .+-+.....|+-.+++.+.+.+ +...+..|+.+|.+++++-+
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sf-svWeq~f~~iL~~l~EvL~d~~-~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSF-SVWEQHFAEILLLLLEVLSDSE-DEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccch-hHHHHHHHHHHHHHHHHHccch-hhHHHHHHHHHHHHHHHhch
Confidence 35666666666543 444555555434333322222 2334556778888888888754 67889999999999999988
Q ss_pred hhhhHhHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000934 162 NLMSNDHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1219)
Q Consensus 162 ~~l~~~~~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~ 240 (1219)
.-+..+.+..+..++..-.++.. .+|.++-.|+-.++.+.|-.-+..+.+.++. .+. ..--.++.++-.+++.
T Consensus 363 ~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~--~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 363 ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADE--PRAVAVIKMLTKLFER 436 (516)
T ss_pred HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----Ccc--hHHHHHHHHHHHHHhh
Confidence 87776655555556666666655 5666666777777888877655555555543 222 2334556677777777
Q ss_pred hh-hhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCc-hhhcccHHHHHHHHHHhc
Q 000934 241 VG-YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP-RDISSYCDEILHLTLEYL 304 (1219)
Q Consensus 241 ~~-~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~-~~~~~~l~~ii~~~l~~l 304 (1219)
.+ +.+.+.+++++|.+++..++ ....+|.+|.-+|-.++.+.+ ++|.||+.++-..-++.+
T Consensus 437 l~~EeL~~ll~diaP~~iqay~S---~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 437 LSAEELLNLLPDIAPCVIQAYDS---TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred cCHHHHHHhhhhhhhHHHHHhcC---chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHH
Confidence 66 57888999999999999984 578899999999999999999 899999998765544443
No 92
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.73 E-value=0.00055 Score=84.17 Aligned_cols=207 Identities=21% Similarity=0.280 Sum_probs=150.2
Q ss_pred hhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccch
Q 000934 249 LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEE 328 (1219)
Q Consensus 249 l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d 328 (1219)
++.+.+.+...+. +.+-.-|-.+++.+...+..-+.+..+-...++..+++....|.|
T Consensus 251 ~~ki~~~l~t~~~---s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN------------------- 308 (815)
T KOG1820|consen 251 LSKITKNLETEML---SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDAN------------------- 308 (815)
T ss_pred hhhcChHHHHhhh---ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcc-------------------
Confidence 3444555544444 355667767766666665554433333333444444444444444
Q ss_pred hhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccc
Q 000934 329 DESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQ 408 (1219)
Q Consensus 329 ~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~ 408 (1219)
-.|-.-|+.+|..+....+..+..+-..++|.++.+++|.-..+|..+..++.+++..+.
T Consensus 309 --------------~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~------ 368 (815)
T KOG1820|consen 309 --------------INVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP------ 368 (815)
T ss_pred --------------hhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc------
Confidence 356778899999999888877888888999999999999999999999988888876431
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchh--hhhhhhhhhHhHHHhhcCCCCcchh
Q 000934 409 IDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDC--LADHIGSLIPGIEKSLNDKSSTSNL 486 (1219)
Q Consensus 409 ~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~--l~~~~~~l~~~l~~~l~d~~~~~~~ 486 (1219)
+..+.+.+...++++++..+ ..|..+|.......++. ....+..++|.+....+|.. ..+
T Consensus 369 ---------------l~~~~~~I~e~lk~knp~~k-~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~--~~V 430 (815)
T KOG1820|consen 369 ---------------LSKMSEAILEALKGKNPQIK-GECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTD--KDV 430 (815)
T ss_pred ---------------HHHHHHHHHHHhcCCChhhH-HHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCc--HHH
Confidence 44556777788899999999 99999999888776532 23478889999999988875 689
Q ss_pred HHHHHHHHHHHhccCCCCCchhhhhhhHH
Q 000934 487 KIEALTFTRLVLSSHSPPVFHPYIKALSS 515 (1219)
Q Consensus 487 ~~~al~~l~~l~~~~~~~~~~~~l~~i~p 515 (1219)
|..++..++.+...|+.+.+..++..+-+
T Consensus 431 R~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 431 RKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 99999999999999987766666655544
No 93
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.2 Score=59.26 Aligned_cols=169 Identities=14% Similarity=0.195 Sum_probs=111.4
Q ss_pred HHhHhHHHHHhhhccC------CChhHHHHHHHHHHHHHHHhhhhhhHh----HHHHHHHHhhhhcCChHHHHHHHHHHH
Q 000934 125 HTSLTPQLTKGITLKD------MNTEIRCECLDILCDVLHKFGNLMSND----HERLLSALLPQLSANQASVRKKSVSCI 194 (1219)
Q Consensus 125 ~~~l~p~L~~~l~~~~------~~~~v~~~al~~L~~l~~~~g~~l~~~----~~~l~~~ll~~l~~~~~~vrk~a~~~l 194 (1219)
.+-+++-+...+++.. .+..-.++|+.+++.+.. +-...++. ..-+...++|.++++..-+|.||+..+
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s-~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~i 484 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS-FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFI 484 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH-HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHH
Confidence 3445555555552211 134456678888887766 32222222 233567778888888778999999999
Q ss_pred HHHHhhCCHH-HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH--hhhhhccchhhhHHHHHHhhhccCCCChHHH
Q 000934 195 ASLASSLSDD-LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA--VGYRFGPHLGDTVPVLIDYCTSASENDEELR 271 (1219)
Q Consensus 195 ~~l~~~~~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~--~~~~~~~~l~~iip~ll~~~~~~~~~d~elr 271 (1219)
+.+..-.++. ..-...+.....+++... .++-.+.-++..+... ...+|..|+|.+|..++..-+. -+-|-
T Consensus 485 s~~eeDfkd~~ill~aye~t~ncl~nn~l--pv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~--feiD~-- 558 (970)
T COG5656 485 STIEEDFKDNGILLEAYENTHNCLKNNHL--PVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT--FEIDP-- 558 (970)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcCCc--chhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc--ccchH--
Confidence 9996666655 455667777777777543 3555555555555543 3467899999999999986542 12222
Q ss_pred HHHHHHHHHHHHhCchhhcccHHHHHHHHHH
Q 000934 272 EYSLQALESFLLRCPRDISSYCDEILHLTLE 302 (1219)
Q Consensus 272 e~al~~l~~l~~~~~~~~~~~l~~ii~~~l~ 302 (1219)
.-.+++.|+.+.+++++||-+++..-+.+
T Consensus 559 --LS~vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 559 --LSMVMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred --HHHHHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 34567899999999999999988776544
No 94
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.69 E-value=7e-05 Score=59.81 Aligned_cols=55 Identities=31% Similarity=0.382 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHH
Q 000934 343 WKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIEL 397 (1219)
Q Consensus 343 wkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l 397 (1219)
|.||+.|+.+|+.+....++.+.++...++|.|+..++|.++.||..++.+++.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8999999999999888889999999999999999999999999999999888753
No 95
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=97.68 E-value=3.2e-05 Score=75.94 Aligned_cols=125 Identities=19% Similarity=0.217 Sum_probs=93.4
Q ss_pred ccchHHHHHHhcCCCchhhHHHHhhhHhhhccCCc----hh---hhh---------hhHhHHHHHhhccCCChHHHHHHH
Q 000934 964 AKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPE----KI---DEI---------IFPEISSFLMLIKDQDRHVRRAAV 1027 (1219)
Q Consensus 964 ~~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~----~~---~~~---------l~~~i~~~l~~l~D~~~~vR~~a~ 1027 (1219)
..++|.++..+......+|.+-||+|||.+++|.+ +| +.. +..++..+..+|.| +.+||..+.
T Consensus 8 ~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~ 86 (169)
T PF08623_consen 8 DQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCH 86 (169)
T ss_dssp HHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHH
Confidence 36789999888888889999999999999999855 22 122 33345566678999 899999999
Q ss_pred HHHHHHHhcCchhhhchhhhhhHHHHHhhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhh
Q 000934 1028 LALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDS 1095 (1219)
Q Consensus 1028 ~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~elir~v~mgpfkh~~Ddgle~Rk~a~e~l~~ll~~ 1095 (1219)
.+|..+++..|..+.++++.+.+.+-.....| +.-...|+..+.--|+-|+++.++.++-..
T Consensus 87 ~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k------~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~ 148 (169)
T PF08623_consen 87 LMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKK------LKENAVKQEIEKQQELIRSVLRAVKALNSK 148 (169)
T ss_dssp HHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----------TTS-HHHHHHHHHHHHHHHHHHHHH-HS
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHhhcc------CCCCcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887765422 223355667788889999999999988333
No 96
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.0036 Score=72.27 Aligned_cols=100 Identities=13% Similarity=0.140 Sum_probs=70.6
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHH
Q 000934 375 LIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLREL 454 (1219)
Q Consensus 375 Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L 454 (1219)
++..+.+++.+||..++.++-++-+ + .+.-..+.+...+.++|....+| .+|++++.-+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e--g------------------~kL~~~~Y~~A~~~lsD~~e~VR-~aAvqlv~v~ 261 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE--G------------------FKLSKACYSRAVKHLSDDYEDVR-KAAVQLVSVW 261 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc--c------------------ccccHHHHHHHHHHhcchHHHHH-HHHHHHHHHH
Confidence 5555688889999999988877743 1 01112334666678888888899 9999988888
Q ss_pred HHhcchhhh------hhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHH
Q 000934 455 VVVLPDCLA------DHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLV 497 (1219)
Q Consensus 455 ~~~~~~~l~------~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l 497 (1219)
....|.... .+....+..++.++.|.+ ..+|++|..++|.+
T Consensus 262 gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~s--l~VRV~AaK~lG~~ 308 (823)
T KOG2259|consen 262 GNRCPAPLERESEEEKLKDAAFSSVCRAVRDRS--LSVRVEAAKALGEF 308 (823)
T ss_pred HhcCCCcccchhhhhhhHHHHHHHHHHHHhcCc--eeeeehHHHHhchH
Confidence 877754331 256667778888888865 56788877777655
No 97
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.14 Score=61.25 Aligned_cols=438 Identities=13% Similarity=0.178 Sum_probs=235.8
Q ss_pred ChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChh
Q 000934 40 DADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSS 119 (1219)
Q Consensus 40 ~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~ 119 (1219)
.++.....+..+++-..|+|+.+|..|++.+|.+-- +..++.+.+-|...+.++.+.+|..++.+...+-. ++. +
T Consensus 80 ~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v---~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~-~~~-~ 154 (734)
T KOG1061|consen 80 KPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRV---DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD-IDP-D 154 (734)
T ss_pred CchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEee---hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhc-CCh-h
Confidence 345566678888999999999999999999986632 24556667777777777778888888877765542 221 0
Q ss_pred hhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhh-hhHhHHHHHHHHhhhhcC-ChHHHHHHHHHHHHHH
Q 000934 120 LAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL-MSNDHERLLSALLPQLSA-NQASVRKKSVSCIASL 197 (1219)
Q Consensus 120 ~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~-l~~~~~~l~~~ll~~l~~-~~~~vrk~a~~~l~~l 197 (1219)
.. .-.-+++.|-+.+.+. ++.|-..|+-.|.++.+..... .......+...++..++. .+| .-+..+..+
T Consensus 155 ~~--~~~gl~~~L~~ll~D~--~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW----~qi~IL~~l 226 (734)
T KOG1061|consen 155 LV--EDSGLVDALKDLLSDS--NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEW----GQIFILDCL 226 (734)
T ss_pred hc--cccchhHHHHHHhcCC--CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhh----hHHHHHHHH
Confidence 00 0112445555555543 5789999999999998876532 112234444445544432 122 235667778
Q ss_pred HhhCCHHH--HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHH
Q 000934 198 ASSLSDDL--LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSL 275 (1219)
Q Consensus 198 ~~~~~~~~--~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al 275 (1219)
+.+.+++. ..+++..+...+++.+. .+.-.++..+-......+..-.-++..+.|.++..+.. .+++.=.++
T Consensus 227 ~~y~p~d~~ea~~i~~r~~p~Lqh~n~--avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~----~~e~qyvaL 300 (734)
T KOG1061|consen 227 AEYVPKDSREAEDICERLTPRLQHANS--AVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSS----ESEIQYVAL 300 (734)
T ss_pred HhcCCCCchhHHHHHHHhhhhhccCCc--ceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecc----cchhhHHHH
Confidence 88876653 55677777777777654 23334444444444444332223445556666555542 225544455
Q ss_pred HHHHHHHHhCchhhcccHHHHHHHHHHhccc-CCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHH
Q 000934 276 QALESFLLRCPRDISSYCDEILHLTLEYLSY-DPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLA 354 (1219)
Q Consensus 276 ~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~-dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~ 354 (1219)
.=+..++..+|+.++..+. .=|++| ||-|- ...=.+++.
T Consensus 301 rNi~lil~~~p~~~~~~~~------~Ff~kynDPiYv----------------------------------K~eKleil~ 340 (734)
T KOG1061|consen 301 RNINLILQKRPEILKVEIK------VFFCKYNDPIYV----------------------------------KLEKLEILI 340 (734)
T ss_pred hhHHHHHHhChHHHHhHhH------eeeeecCCchhh----------------------------------HHHHHHHHH
Confidence 5556667777753321110 112344 44442 111122222
Q ss_pred HHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHH
Q 000934 355 ALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQ 434 (1219)
Q Consensus 355 ~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~ 434 (1219)
.++.. .....+++-+...-.+-+...-.+++++++.+.... +.+-..+..+...
T Consensus 341 ~la~~------~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~--------------------e~~~~cv~~lLel 394 (734)
T KOG1061|consen 341 ELAND------ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKA--------------------EQSNDCVSILLEL 394 (734)
T ss_pred HHhhH------hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhh--------------------hhhhhhHHHHHHH
Confidence 22211 112223333322222333333334566666654322 1124455666666
Q ss_pred hcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhH
Q 000934 435 LREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALS 514 (1219)
Q Consensus 435 L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~ 514 (1219)
++.+..-+. +.+...+..+....|+.. ..+++.+...+..- ..+..|......+|...... . -...++
T Consensus 395 l~~~~~yvv-qE~~vvi~dilRkyP~~~----~~vv~~l~~~~~sl-~epeak~amiWilg~y~~~i-----~-~a~elL 462 (734)
T KOG1061|consen 395 LETKVDYVV-QEAIVVIRDILRKYPNKY----ESVVAILCENLDSL-QEPEAKAALIWILGEYAERI-----E-NALELL 462 (734)
T ss_pred Hhhccccee-eehhHHHHhhhhcCCCch----hhhhhhhccccccc-CChHHHHHHHHHHhhhhhcc-----C-cHHHHH
Confidence 665555566 777778888888777654 33333333333211 12456666666777664432 1 134455
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Q 000934 515 SPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISC 585 (1219)
Q Consensus 515 p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~a 585 (1219)
..++....|....|+.+-+. ..++.+.. ..+--++++..++........++++|.+++.=
T Consensus 463 ~~f~en~~dE~~~Vql~LLt---a~ik~Fl~--------~p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y 522 (734)
T KOG1061|consen 463 ESFLENFKDETAEVQLELLT---AAIKLFLK--------KPTETQELLQGVLPLATADTDNPDLRDRGLIY 522 (734)
T ss_pred HHHHhhcccchHHHHHHHHH---HHHHHHhc--------CCccHHHHHHHHHhhhhccccChhhhhhHHHH
Confidence 55666666666555544443 34443211 11234566666666555545567899888643
No 98
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.09 Score=62.55 Aligned_cols=317 Identities=15% Similarity=0.174 Sum_probs=188.1
Q ss_pred HhHHHHHHHHhhhhcCCh---HHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh
Q 000934 166 NDHERLLSALLPQLSANQ---ASVRKKSVSCIASLASS-LSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV 241 (1219)
Q Consensus 166 ~~~~~l~~~ll~~l~~~~---~~vrk~a~~~l~~l~~~-~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~ 241 (1219)
++..=+.+.+++.+..+. .-+|+|.+-.+|.-+.. +..+.-..+...++.-+++.++ -.+|-++.+++..+..-.
T Consensus 480 dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D-~vV~Ltt~~tlkl~vDD~ 558 (978)
T KOG1993|consen 480 DFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQND-LVVRLTTARTLKLVVDDW 558 (978)
T ss_pred CHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCcccc-ceeehHHHHHHHHhhhhc
Confidence 344556677777765432 25899999999987764 3444445566666777776643 357778888888887653
Q ss_pred ---hhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCc
Q 000934 242 ---GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDS 318 (1219)
Q Consensus 242 ---~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~ 318 (1219)
++.|.||++.+...+.+.+... +.-+.|-..+..+..++.+..+.++||..++++.+-..+.-
T Consensus 559 nF~~dsFlp~lenlf~~lfkll~~~--~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~------------ 624 (978)
T KOG1993|consen 559 NFSEDSFLPYLENLFVLLFKLLKAV--EECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEE------------ 624 (978)
T ss_pred cCChhhhhhhHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh------------
Confidence 4789999999998888888753 45677888999999999999989999999998877666530
Q ss_pred ccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhh--ccc-chhHHHHHHHHHH
Q 000934 319 DDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRF--KER-EENVKMDVFNTFI 395 (1219)
Q Consensus 319 ~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~--~d~-~~~Vr~~~~~~l~ 395 (1219)
.++ + .-+|-+-..+|..++.+.+..=.+.|.-+.|.+--.. ..+ +-..-.+....|.
T Consensus 625 ----------s~~-------e---~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~ 684 (978)
T KOG1993|consen 625 ----------SEE-------E---PLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWL 684 (978)
T ss_pred ----------hcc-------C---cHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHH
Confidence 000 0 0456666677888888766433345555555543221 111 1223345667777
Q ss_pred HHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhc-chhhhhhhhhhhHhHH
Q 000934 396 ELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVL-PDCLADHIGSLIPGIE 474 (1219)
Q Consensus 396 ~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~-~~~l~~~~~~l~~~l~ 474 (1219)
+.+.... ...| .+-...|.++..+ ....... ..+++++.+-+--- +.-+..|...++..+.
T Consensus 685 ~~L~n~~----------~l~p--~ll~L~p~l~~~i----E~ste~L--~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~ 746 (978)
T KOG1993|consen 685 TTLMNSQ----------KLTP--ELLLLFPHLLYII----EQSTENL--PTVLMIISSYILLDNTVFLNDYAFGIFKKLN 746 (978)
T ss_pred HHHhccc----------ccCH--HHHHHHHHHHHHH----HhhhhhH--HHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 7765431 1112 2233334443333 2222222 34555555433222 2234557777777777
Q ss_pred HhhcCCCCcchhHHHHHHHHHHHhccCCCCCchh-hhhhhHHHHHHHh--cCCchHHHHHHHHHHHHH
Q 000934 475 KSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHP-YIKALSSPVLAAV--GERYYKVTAEALRVCGEL 539 (1219)
Q Consensus 475 ~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~-~l~~i~p~l~~~l--~d~~~~v~~~al~~l~~l 539 (1219)
..+.|-. ..--...+..+..++++.+ .+.+ +...++|.+..++ +++++-+-.+=+.+++.+
T Consensus 747 ~~l~dvr--~egl~avLkiveili~t~~--il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi 810 (978)
T KOG1993|consen 747 DLLDDVR--NEGLQAVLKIVEILIKTNP--ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARI 810 (978)
T ss_pred HHHHHhh--HHHHHHHHHHHHHHHhhhH--HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 7665432 1223344555555555532 3333 4555666666554 566666655555555554
No 99
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.84 Score=60.04 Aligned_cols=123 Identities=18% Similarity=0.116 Sum_probs=73.8
Q ss_pred CCChHHHHHHH-HHHHHhccCccchhhHHHHHHHHHHhhhcChh-hHHHHHHHHHHHhcCCCcc-hhhHHHHHHHHHHhh
Q 000934 38 KADADLEVKLS-NIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP-RVVEMTDKLCIKLLNGKDQ-HRDIASIALKTIIAE 114 (1219)
Q Consensus 38 ~~~~~~~~~v~-~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~-~~~~l~~~L~~~~~~~~~~-~r~~a~~aL~~~i~~ 114 (1219)
.+.++..+++. ..+...|..+++..|-.+.+.++.++..+++. .+..+....+..+.+..+. .|..-..||+.+-..
T Consensus 867 ~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhky 946 (2067)
T KOG1822|consen 867 SLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKY 946 (2067)
T ss_pred ccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 45666665544 55567888899999999999999999876664 4567777777777665544 566777787776543
Q ss_pred cCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhh
Q 000934 115 VTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1219)
Q Consensus 115 ~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~ 162 (1219)
.+.- ........-+..++...++.+ .+.|+.-++..+.-++..-|+
T Consensus 947 vgs~-~s~qhl~t~v~illal~~Ds~-~p~VqtwSL~al~~i~~s~~p 992 (2067)
T KOG1822|consen 947 VGSI-GSGQHLNTSVSILLALATDST-SPVVQTWSLHALALILDSSGP 992 (2067)
T ss_pred ccCC-CCchhcccHHHHHHHHhhcCC-CchhhhhHHHHHHHHHcCCCc
Confidence 3320 001112222223444444443 445666655555555544444
No 100
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.45 E-value=0.0063 Score=70.92 Aligned_cols=238 Identities=13% Similarity=0.207 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhc--cCCCChHHHHHHHHHHHHHHH
Q 000934 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTS--ASENDEELREYSLQALESFLL 283 (1219)
Q Consensus 206 ~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~--~~~~d~elre~al~~l~~l~~ 283 (1219)
...++..++..+..+.. ..-+..+.|+-.+.....+...|+...+++.+...+.. +++.++..-.+.+++++.+++
T Consensus 24 ~~~ll~~Lf~~i~~~~s--~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir 101 (435)
T PF03378_consen 24 AQQLLQNLFALIEKPGS--AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIR 101 (435)
T ss_dssp HHHHHHHHHHHHHTT-S--TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC--ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHH
Confidence 45677777777765432 12245566777777777777788877777777655431 136778888899999999999
Q ss_pred hCch----hhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhc
Q 000934 284 RCPR----DISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS 359 (1219)
Q Consensus 284 ~~~~----~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~ 359 (1219)
.+.+ .+..+-+.++|.....+..|= .|| =--+-+.++.+++.
T Consensus 102 ~~~~~~~~~v~~~E~~L~P~f~~ILq~dV---------------~EF-------------------~PYvfQIla~Lle~ 147 (435)
T PF03378_consen 102 FVCEADPEAVSQFEEALFPPFQEILQQDV---------------QEF-------------------IPYVFQILAQLLEL 147 (435)
T ss_dssp HS-GGGHH---HHHHHHHHHHHHHHHTT----------------TTT-------------------HHHHHHHHHHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHHHHHHHH---------------HHH-------------------HHHHHHHHHHHHHc
Confidence 7542 344667778888777775210 000 01356788889988
Q ss_pred Cc-hhhHHHHHHHHHHHHh-hhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHH-HHHHHHHHHHHHHHhc
Q 000934 360 RP-EMLSKLYEEACPKLID-RFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLL-KQEVSKIVKSINRQLR 436 (1219)
Q Consensus 360 ~~-~~l~~~~~~i~p~Li~-~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L-~~~~p~lv~~l~~~L~ 436 (1219)
+| ..+.+.|..++|.|+. .+.++..+| -+..+.+.+.++... .... ..++..++..+.+++.
T Consensus 148 ~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~--------------~~i~~~~~l~~iLgvFQkLi~ 212 (435)
T PF03378_consen 148 RPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDP--------------SFIVANNQLEPILGVFQKLIA 212 (435)
T ss_dssp SS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHG--------------GG----S-CHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCc--------------hhhcchhhHHHHHHHHHHHHC
Confidence 88 6777788888888764 355666666 345556666666532 1111 2467888999999998
Q ss_pred ccCccchhhHHHHHHHHHHHhcch-hhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHh
Q 000934 437 EKSIKTKQVGAFSVLRELVVVLPD-CLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVL 498 (1219)
Q Consensus 437 ~~~~~~r~~~~~~~L~~L~~~~~~-~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~ 498 (1219)
++... ..++.+|..++...|. .+.+|++.++..++..|+.+.+ ......-+.|++.++
T Consensus 213 sk~~D---~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT-~kf~~~fv~F~~~~~ 271 (435)
T PF03378_consen 213 SKAND---HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKT-EKFVKRFVVFLSLFA 271 (435)
T ss_dssp -TTCH---HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHH
T ss_pred CCCcc---hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH
Confidence 87643 5689999999999987 5789999999999999986543 333333344444443
No 101
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.44 E-value=0.13 Score=55.82 Aligned_cols=240 Identities=20% Similarity=0.275 Sum_probs=155.5
Q ss_pred ChhHHHHHHHHHHHHHHHhhhh-hh-HhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHh
Q 000934 142 NTEIRCECLDILCDVLHKFGNL-MS-NDHERLLSALLPQLSANQASVRKKSVSCIASLAS--SLSDDLLAKATIEVVRNL 217 (1219)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~-l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~--~~~~~~~~~l~~~ll~~l 217 (1219)
++.+|..++..|++++.+.+.. +. .....+.+.+...+.|. ..+.- ++.++..+.. ..+......++..+.+..
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~-~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~ 89 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQP-ALKGLLALVKMKNFSPESAVKILRSLFQNV 89 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHH-HHHHHHHHHhCcCCChhhHHHHHHHHHHhC
Confidence 6889999999999999999864 44 46788888888888653 33433 3677766663 344555666777766654
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHH
Q 000934 218 RSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEIL 297 (1219)
Q Consensus 218 ~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii 297 (1219)
.-+......|..+++.+..+.......+...=+..+..+++.++. |-|+.---.++..+..++...+ +.++.++++
T Consensus 90 ~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~g--EkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lF 165 (262)
T PF14500_consen 90 DVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDG--EKDPRNLLLSFKLLKVILQEFD--ISEFAEDLF 165 (262)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhcc--cchhHHHHH
Confidence 433333357888999999998876655544446677777777764 5667644556666666777776 488899999
Q ss_pred HHHHHhc--ccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Q 000934 298 HLTLEYL--SYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKL 375 (1219)
Q Consensus 298 ~~~l~~l--~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~L 375 (1219)
..+..|. .+.|.-+|. | .. -|.-=...|..-+...|. +-+-.+|.|
T Consensus 166 d~~~cYFPI~F~pp~~dp---------------------~----~I---T~edLk~~L~~cl~s~~~----fa~~~~p~L 213 (262)
T PF14500_consen 166 DVFSCYFPITFRPPPNDP---------------------Y----GI---TREDLKRALRNCLSSTPL----FAPFAFPLL 213 (262)
T ss_pred HHhhheeeeeeeCCCCCC---------------------C----CC---CHHHHHHHHHHHhcCcHh----hHHHHHHHH
Confidence 9887663 232321100 0 00 011111222222333331 334678999
Q ss_pred HhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHH
Q 000934 376 IDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINR 433 (1219)
Q Consensus 376 i~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~ 433 (1219)
++.+......|+.++++++...+...+ + ..+.+++.+|-.++..
T Consensus 214 leKL~s~~~~~K~D~L~tL~~c~~~y~-------------~-~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 214 LEKLDSTSPSVKLDSLQTLKACIENYG-------------A-DSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHCC-------------H-HHHHHHHHHHHHHHHH
Confidence 999988888999999999999988654 2 3566677666666543
No 102
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.031 Score=63.01 Aligned_cols=145 Identities=19% Similarity=0.232 Sum_probs=112.1
Q ss_pred hhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhh
Q 000934 384 ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLA 463 (1219)
Q Consensus 384 ~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~ 463 (1219)
|+-|..-+..+.++.+...- |+ . ..+..++..+..-..+++.+.| ..|+..|+.++...|....
T Consensus 231 ~~~ritd~Af~ael~~~~~l---~~-----~-------~lL~s~~~~la~ka~dp~a~~r-~~a~r~L~~~as~~P~kv~ 294 (533)
T KOG2032|consen 231 ENGRITDIAFFAELKRPKEL---DK-----T-------GLLGSVLLSLANKATDPSAKSR-GMACRGLGNTASGAPDKVR 294 (533)
T ss_pred ccchHHHHHHHHHHhCcccc---cc-----c-------ccHHHHHHHHHHhccCchhHHH-HHHHHHHHHHhccCcHHHH
Confidence 45555556666666654320 10 0 1244555666666778888899 9999999999988888888
Q ss_pred hhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhc
Q 000934 464 DHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVL 543 (1219)
Q Consensus 464 ~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l 543 (1219)
.|.+.++..+...|-|..+ ..+..+++.++..+.+......+.+|+-.+.-.+.....+...+.+..|+..++.+.+..
T Consensus 295 th~~~~ldaii~gL~D~~~-~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 295 THKTTQLDAIIRGLYDDLN-EEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred HhHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 9999999999999988765 788999999999988776666778888888888888888888899999999999999876
Q ss_pred cC
Q 000934 544 RP 545 (1219)
Q Consensus 544 ~~ 545 (1219)
+.
T Consensus 374 g~ 375 (533)
T KOG2032|consen 374 GG 375 (533)
T ss_pred CC
Confidence 44
No 103
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.47 Score=56.28 Aligned_cols=272 Identities=20% Similarity=0.265 Sum_probs=149.6
Q ss_pred HHHHHHHhhhccCCCCCccchHHHHHHhcCC-CchhHhHHHHHHHHhhhhcCcccchHHHHHHhccccchhHHHHHHHHH
Q 000934 834 LALLCLGEIGRRKDLSSHEHIENVIIESFQS-PFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKE 912 (1219)
Q Consensus 834 laL~~Lgeig~~~~~~~~~~l~~~ll~~l~~-~~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~~~~~~~l~alke 912 (1219)
-||.+||-|-...+ ....+.+...+.+ ++|.||--|...||-.+.|.-.. -.+..+||
T Consensus 398 GalyAlGLIhA~hG----~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-----------------eiYe~lKe 456 (929)
T KOG2062|consen 398 GALYALGLIHANHG----RGITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-----------------EIYEKLKE 456 (929)
T ss_pred chhhhhhccccCcC----ccHHHHHHHHHHhccchhhhhhhhhhccchhcccccH-----------------HHHHHHHH
Confidence 46777777744432 2367777777764 46888888887777655543221 12344444
Q ss_pred HHhhccccchhh--hh-------HHHHHHHHHHHhhccC-CccchHhHHHHHHhhhhccCcccchHHHHHHhcCCCchhh
Q 000934 913 VIVRQSVDKAEF--QD-------SSVEKILNLLFNHCES-EEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTR 982 (1219)
Q Consensus 913 ii~~~~~~~~~~--~~-------~~~~~i~~~L~~~~~~-~~e~~r~~~ae~LG~l~~~~p~~~lp~l~~~l~~~~~~~R 982 (1219)
++..-.....++ +. ..-.+.+..++.-..+ ..|.+.+-.+-.+.-.....-+..=|.+.+++.+++|-.|
T Consensus 457 vLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR 536 (929)
T KOG2062|consen 457 VLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILR 536 (929)
T ss_pred HHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhh
Confidence 443211000000 00 0012223333333222 2344444444333333333334556889999999999999
Q ss_pred HHHHhhhHhhhccCCchhhhhhhHhHHHHHh-hccCCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHHHhhhcccc
Q 000934 983 ATVVIAIKYSIVERPEKIDEIIFPEISSFLM-LIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKE 1061 (1219)
Q Consensus 983 ~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~-~l~D~~~~vR~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~e 1061 (1219)
+..+-++.-.....+. . ..+.++|- ..+|.+.+|||+|+.+|+-+.-..|+.....+ ..|- +.
T Consensus 537 ~~Gm~t~alAy~GTgn--n----kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V----~lLs-es----- 600 (929)
T KOG2062|consen 537 YGGMYTLALAYVGTGN--N----KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTV----SLLS-ES----- 600 (929)
T ss_pred hhhHHHHHHHHhccCc--h----hhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHH----HHHh-hh-----
Confidence 8877766533322221 1 34666666 58899999999999999998888777533222 2111 11
Q ss_pred cceeeeccCceeecccChhHHH-HHHHHHHHHHhh-hhcCCCchhchHHHHhcccCCcch-hHhhHHHHHHHHHhhCchh
Q 000934 1062 LIRTVDLGPFKHTVDDGLELRK-AAFECVDTLLDS-CLDQVNPSSFIVPYLKSGLEDHYD-VKMPCHLILSKLADKCPSA 1138 (1219)
Q Consensus 1062 lir~v~mgpfkh~~Ddgle~Rk-~a~e~l~~ll~~-~~~~~~~~~~~~~~~~~gl~D~~d-i~~l~~~~l~~l~~~~p~~ 1138 (1219)
|. --+|= +|+ .|.. |.+. -..+-+ +.+..-.+|-.| ||.=++..++-+...+-..
T Consensus 601 ---------~N------~HVRyGaA~-----ALGIaCAGt-G~~eAi-~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 601 ---------YN------PHVRYGAAM-----ALGIACAGT-GLKEAI-NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred ---------cC------hhhhhhHHH-----HHhhhhcCC-CcHHHH-HHHhhhhcChHHHHHHHHHHHHHHHHHhcccc
Confidence 00 11232 222 2222 3221 122222 133333457444 8877777777777777777
Q ss_pred HHHhHHHhhHHHHhhhcccCCcchhh
Q 000934 1139 VLAVLDSLVDPLQKTINFKPKQDAVK 1164 (1219)
Q Consensus 1139 ~~~~l~~l~~~l~~~l~~k~k~~~~k 1164 (1219)
...+...+.+.|.++++.|-.+..+|
T Consensus 659 ~~pkv~~frk~l~kvI~dKhEd~~aK 684 (929)
T KOG2062|consen 659 LCPKVNGFRKQLEKVINDKHEDGMAK 684 (929)
T ss_pred cCchHHHHHHHHHHHhhhhhhHHHHH
Confidence 78888889888888888775544433
No 104
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.41 E-value=0.41 Score=54.96 Aligned_cols=480 Identities=15% Similarity=0.152 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhh
Q 000934 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLA 121 (1219)
Q Consensus 42 ~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~ 121 (1219)
.....+.=.+++++..++...|...--.|..|. ++.++ +.-....++.-+..+.++ ++-.+|+|+++.-++.. ..
T Consensus 61 ~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS-~~ted-vlm~tssiMkD~~~g~~~--~~kp~AiRsL~~Vid~~-tv 135 (898)
T COG5240 61 ATATNLFFAILKLFQHKDLYLRQCVYSAIKELS-KLTED-VLMGTSSIMKDLNGGVPD--DVKPMAIRSLFSVIDGE-TV 135 (898)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-hcchh-hhHHHHHHHHhhccCCcc--ccccHHHHHHHHhcCcc-hh
Confidence 445556666677777777777765444444332 22332 223333444444444332 35557777777666541 11
Q ss_pred HHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCCh--------H-HHHHHHHH
Q 000934 122 QSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQ--------A-SVRKKSVS 192 (1219)
Q Consensus 122 ~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~--------~-~vrk~a~~ 192 (1219)
.. ..++ |-+++-+. ...++..|+-.--.++...-.....+.....+.++..-+.|. | .---.--.
T Consensus 136 ~~-~er~---l~~a~Vs~--~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYH 209 (898)
T COG5240 136 YD-FERY---LNQAFVST--SMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYH 209 (898)
T ss_pred hh-HHHH---hhhhcccc--chhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHH
Confidence 11 1111 11222221 344444444332222222222222333344444443322221 0 01111234
Q ss_pred HHHHHHhhCCHH--HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHH
Q 000934 193 CIASLASSLSDD--LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEEL 270 (1219)
Q Consensus 193 ~l~~l~~~~~~~--~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~el 270 (1219)
++|.|...-..+ ....++.++.....-.+. -..-..+.++..+.. +-...+.++.|++-..+++ -.+.+
T Consensus 210 alGlLyq~kr~dkma~lklv~hf~~n~smknq--~a~V~lvr~~~~ll~----~n~q~~~q~rpfL~~wls~---k~emV 280 (898)
T COG5240 210 ALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQ--LAGVLLVRATVELLK----ENSQALLQLRPFLNSWLSD---KFEMV 280 (898)
T ss_pred HHHHHHHHhcccHHHHHHHHHHhhcccccccc--hhheehHHHHHHHHH----hChHHHHHHHHHHHHHhcC---cchhh
Confidence 555555544322 233445544433311110 001112233333333 3345677888888888873 23444
Q ss_pred HHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHH
Q 000934 271 REYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAA 350 (1219)
Q Consensus 271 re~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa 350 (1219)
--.+..++-+|.... .-..++.+.+..+..+++. |+ --.|-+|.
T Consensus 281 ~lE~Ar~v~~~~~~n--v~~~~~~~~vs~L~~fL~s-~r---------------------------------v~~rFsA~ 324 (898)
T COG5240 281 FLEAARAVCALSEEN--VGSQFVDQTVSSLRTFLKS-TR---------------------------------VVLRFSAM 324 (898)
T ss_pred hHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhc-ch---------------------------------HHHHHHHH
Confidence 333444444444332 0123567777777667651 21 14588999
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHH
Q 000934 351 KCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKS 430 (1219)
Q Consensus 351 ~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~ 430 (1219)
+.|..+...+|+.... ...=+..|+ .|.+.++--- ++.++++ +|+ .+.+..+++.
T Consensus 325 Riln~lam~~P~kv~v-cN~evEsLI---sd~Nr~Isty---AITtLLK-TGt-----------------~e~idrLv~~ 379 (898)
T COG5240 325 RILNQLAMKYPQKVSV-CNKEVESLI---SDENRTISTY---AITTLLK-TGT-----------------EETIDRLVNL 379 (898)
T ss_pred HHHHHHHhhCCceeee-cChhHHHHh---hcccccchHH---HHHHHHH-cCc-----------------hhhHHHHHHH
Confidence 9999999999965431 111122232 5544443322 4455554 331 2345556666
Q ss_pred HHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhh
Q 000934 431 INRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYI 510 (1219)
Q Consensus 431 l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l 510 (1219)
+.....|-+..-+ .-++.++++|+..+|..-..++.- +...|.+.. .-..+-.+..++..+++.. |+ .-
T Consensus 380 I~sfvhD~SD~FK-iI~ida~rsLsl~Fp~k~~s~l~F----L~~~L~~eG-g~eFK~~~Vdaisd~~~~~-p~----sk 448 (898)
T COG5240 380 IPSFVHDMSDGFK-IIAIDALRSLSLLFPSKKLSYLDF----LGSSLLQEG-GLEFKKYMVDAISDAMEND-PD----SK 448 (898)
T ss_pred HHHHHHhhccCce-EEeHHHHHHHHhhCcHHHHHHHHH----HHHHHHhcc-cchHHHHHHHHHHHHHhhC-ch----HH
Confidence 6666666555555 667778888888877654334433 333443332 2455666666777766553 22 23
Q ss_pred hhhHHHHHHHhcCCch-HHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 000934 511 KALSSPVLAAVGERYY-KVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLV 589 (1219)
Q Consensus 511 ~~i~p~l~~~l~d~~~-~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l 589 (1219)
+..+..++..+.|..| ++ +++.++-+-+. +|. ...-..|+..+|..++ |. ..-||.+|..|+.-+
T Consensus 449 EraLe~LC~fIEDcey~~I---~vrIL~iLG~E-gP~----a~~P~~yvrhIyNR~i--LE----N~ivRsaAv~aLskf 514 (898)
T COG5240 449 ERALEVLCTFIEDCEYHQI---TVRILGILGRE-GPR----AKTPGKYVRHIYNRLI--LE----NNIVRSAAVQALSKF 514 (898)
T ss_pred HHHHHHHHHHHhhcchhHH---HHHHHHHhccc-CCC----CCCcchHHHHHHHHHH--Hh----hhHHHHHHHHHHHHh
Confidence 4566666777777544 33 44444444332 332 2234467777776543 22 246899999999887
Q ss_pred HHhhcccccchhhhHHHHHHHhhc--CCchHHHHHHHHHHHh
Q 000934 590 ISTFGDNLGAELPACLPVLVDRMG--NEITRLTAVKAFAVIA 629 (1219)
Q Consensus 590 ~~~~g~~l~~~~~~~l~~L~~~L~--~e~~r~~a~~al~~i~ 629 (1219)
.-+..+.+.+ +.+-.+|.++++ ++.+|..|.-++..+-
T Consensus 515 ~ln~~d~~~~--~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 515 ALNISDVVSP--QSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ccCccccccH--HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 7666554433 223334444553 3457777666655543
No 105
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.57 Score=55.70 Aligned_cols=257 Identities=12% Similarity=0.122 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHhcCch--hhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHH
Q 000934 345 VRRAAAKCLAALIVSRPE--MLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQ 422 (1219)
Q Consensus 345 VR~~Aa~~l~~li~~~~~--~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 422 (1219)
+|.-||..+..+-..+++ .+...|+.+.. ++++.+-.|+.++.-++..++.+... ...+.+
T Consensus 476 L~Srace~is~~eeDfkd~~ill~aye~t~n----cl~nn~lpv~ieAalAlq~fi~~~q~-------------h~k~sa 538 (970)
T COG5656 476 LKSRACEFISTIEEDFKDNGILLEAYENTHN----CLKNNHLPVMIEAALALQFFIFNEQS-------------HEKFSA 538 (970)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHHHHH----HHhcCCcchhhhHHHHHHHHHhchhh-------------hHHHHh
Confidence 566677777777555553 34445555544 44556667888888888888875421 125788
Q ss_pred HHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHH--------hhcCCCC----cchhHHHH
Q 000934 423 EVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEK--------SLNDKSS----TSNLKIEA 490 (1219)
Q Consensus 423 ~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~--------~l~d~~~----~~~~~~~a 490 (1219)
++|..++.+...-++-+...- ..++.++++.++..++++-++++..+.+ .+..+.+ ...-.++|
T Consensus 539 hVp~tmekLLsLSn~feiD~L----S~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaa 614 (970)
T COG5656 539 HVPETMEKLLSLSNTFEIDPL----SMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAA 614 (970)
T ss_pred hhhHHHHHHHHhcccccchHH----HHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 999999988877665444322 2356777777777777766666555544 2222211 11234556
Q ss_pred HHHHHHH---hcc--CCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHH
Q 000934 491 LTFTRLV---LSS--HSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAI 565 (1219)
Q Consensus 491 l~~l~~l---~~~--~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~l 565 (1219)
..+++.+ +-+ ..|..++.....+.|.+--.+.+.-...-.||++.+....-..+ ...|..-.+++.+
T Consensus 615 sGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~sk--------eI~pimwgi~Ell 686 (970)
T COG5656 615 SGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSK--------EIEPIMWGIFELL 686 (970)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHH--------HhhhhhhHHHHHH
Confidence 5555544 222 23444444455666666666666555667788888777654432 2446677777777
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccc---hhhhHHHHHHHhhcCCc----hHHHHHHHHHHHhcC
Q 000934 566 MSRLTNQDQDQEVKECAISCMGLVISTFGDNLGA---ELPACLPVLVDRMGNEI----TRLTAVKAFAVIAAS 631 (1219)
Q Consensus 566 l~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~---~~~~~l~~L~~~L~~e~----~r~~a~~al~~i~~s 631 (1219)
.+.+...++ ..--+.+.-++..++...+..+.. |..-++.+....+.+|. .+..+++.+..++.+
T Consensus 687 ~~~l~~~~t-~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln 758 (970)
T COG5656 687 LNLLIDEIT-AVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILN 758 (970)
T ss_pred Hhcccccch-hhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHH
Confidence 776654433 233456666777777776555542 66777778888887765 356677777766643
No 106
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.36 E-value=0.082 Score=60.44 Aligned_cols=256 Identities=13% Similarity=0.104 Sum_probs=135.5
Q ss_pred CchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhh
Q 000934 285 CPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEML 364 (1219)
Q Consensus 285 ~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l 364 (1219)
.|+.|...+...+....+++.++.-.-. ++ .+|+...-|||+.+.+..+......+.+.+
T Consensus 72 LPe~fed~l~~wm~~f~~~L~~~~p~l~-~~-------------------d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f 131 (370)
T PF08506_consen 72 LPEFFEDNLSEWMEIFHKYLTYPNPALE-ED-------------------DDDEPGLLEKVKAWICENLNLYAEKYEEEF 131 (370)
T ss_dssp --HHHHHTHHHHHHHHHHHHH--SGGG--TT--------------------SSS--HHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCcccC-CC-------------------CcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666767777888888888887532100 00 001123358999999999999888887766
Q ss_pred HHHHHHHHHHHHhhh-----cccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHH-HHHh---
Q 000934 365 SKLYEEACPKLIDRF-----KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSI-NRQL--- 435 (1219)
Q Consensus 365 ~~~~~~i~p~Li~~~-----~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l-~~~L--- 435 (1219)
.++.+..+....+.+ +.+.+.+-..+++.+..+.+......-+. -.+++..|+..+ ...+
T Consensus 132 ~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~-----------~~~~L~~Iie~VI~Pnl~~~ 200 (370)
T PF08506_consen 132 EPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFE-----------NKPHLQQIIEKVIFPNLCLR 200 (370)
T ss_dssp HHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT------------SHHHHHHHHHHTHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhC-----------CHHHHHHHHHHhccCccCCC
Confidence 665555554433222 22334455566777766544211000000 022334444322 2111
Q ss_pred -------------------cccCc-cchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhh-cCCCCcchhHHHHHHHH
Q 000934 436 -------------------REKSI-KTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSL-NDKSSTSNLKIEALTFT 494 (1219)
Q Consensus 436 -------------------~~~~~-~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l-~d~~~~~~~~~~al~~l 494 (1219)
...+. .-| .+|..++..|+...+....+-+...+..++... .+++.+++-+-.|+.++
T Consensus 201 e~D~ElfEddP~EYIrrd~e~sd~~TrR-~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li 279 (370)
T PF08506_consen 201 EEDEELFEDDPEEYIRRDLEGSDSDTRR-RAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLI 279 (370)
T ss_dssp HHHHHHHHHSHHHHHHHHSCSS---SHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHhhccccccCCcH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHH
Confidence 11122 345 789999999998765544333333333222211 13444456777899999
Q ss_pred HHHhccCC-----CCC------chh-hhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHH
Q 000934 495 RLVLSSHS-----PPV------FHP-YIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIY 562 (1219)
Q Consensus 495 ~~l~~~~~-----~~~------~~~-~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~ 562 (1219)
+++..... ... +.. |...++|.+. .-.+..+-+++.|++.+..+-..+. .+.+..++
T Consensus 280 ~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~----------~~~l~~~~ 348 (370)
T PF08506_consen 280 GALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP----------KEQLLQIF 348 (370)
T ss_dssp HHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-----------HHHHHHHH
T ss_pred HHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC----------HHHHHHHH
Confidence 98864421 111 223 2344566665 2234566788999999888866542 35788889
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHH
Q 000934 563 NAIMSRLTNQDQDQEVKECAISC 585 (1219)
Q Consensus 563 ~~ll~~l~~~d~d~~vr~~Ai~a 585 (1219)
+.+...|.+. +.-|+.-|..|
T Consensus 349 ~~l~~~L~~~--~~vv~tyAA~~ 369 (370)
T PF08506_consen 349 PLLVNHLQSS--SYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHTTSS---HHHHHHHHHH
T ss_pred HHHHHHhCCC--Ccchhhhhhhh
Confidence 9999888743 45566555554
No 107
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.64 Score=55.77 Aligned_cols=100 Identities=22% Similarity=0.319 Sum_probs=63.9
Q ss_pred hhhhHHHHHHHhhc--CCchHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCC
Q 000934 600 ELPACLPVLVDRMG--NEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDK 677 (1219)
Q Consensus 600 ~~~~~l~~L~~~L~--~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~ 677 (1219)
.....++.+-..++ .|..-..|.+++..+.... ...+...+..|..++..+...+|-+|+..|..++..++..
T Consensus 242 ~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~-----~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTN-----SRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred chhhHHHHHHHHHhchhHHHHHHHHHHHhhccccC-----HhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc
Confidence 34455666666665 4556566667666554322 2223337778889999999999999999999999988765
Q ss_pred CCcchHHHHHHHHhhhcCCCChhhhHHHHHHH
Q 000934 678 IGASAYEVIIVELSTLISDSDLHMTALALELC 709 (1219)
Q Consensus 678 l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l 709 (1219)
+..- =.++-+++++.++.+..+|...+
T Consensus 317 v~~c-----N~elE~lItd~NrsIat~AITtL 343 (865)
T KOG1078|consen 317 VTVC-----NLDLESLITDSNRSIATLAITTL 343 (865)
T ss_pred cccc-----chhHHhhhcccccchhHHHHHHH
Confidence 3321 11244556666666655554433
No 108
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.34 E-value=0.04 Score=67.54 Aligned_cols=340 Identities=17% Similarity=0.251 Sum_probs=182.6
Q ss_pred HHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChh--hH--HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCC-hh
Q 000934 45 VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP--RV--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT-SS 119 (1219)
Q Consensus 45 ~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~--~~--~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~-~~ 119 (1219)
+.++..|.++|+..|.++.-.++.+|..|.-. .++ .+ ..+++.|...+.+++.+.+. .+|+.++ +++. +.
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~---~aLrlL~-NLSfd~~ 363 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVN---VALRLLF-NLSFDPE 363 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHH---HHHHHHH-HhCcCHH
Confidence 44788899999999999999999999888632 111 11 25677888877666554444 4555444 4444 23
Q ss_pred hhHHHHH-hHhHHHHHhhhccCCChhHHHHHHHHHHHHHHH--hhhhhh--HhHHHHHHHHhhhhcCChHHHHHHHHHHH
Q 000934 120 LAQSIHT-SLTPQLTKGITLKDMNTEIRCECLDILCDVLHK--FGNLMS--NDHERLLSALLPQLSANQASVRKKSVSCI 194 (1219)
Q Consensus 120 ~~~~~~~-~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~--~g~~l~--~~~~~l~~~ll~~l~~~~~~vrk~a~~~l 194 (1219)
....+.+ .++|+|...+.++ ..+..++.+|..+... .-..+. ...+.+++.++. .+...+...++..+
T Consensus 364 ~R~~mV~~GlIPkLv~LL~d~----~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~---~~~~~v~~eliaL~ 436 (708)
T PF05804_consen 364 LRSQMVSLGLIPKLVELLKDP----NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLE---NSEEEVQLELIALL 436 (708)
T ss_pred HHHHHHHCCCcHHHHHHhCCC----chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHh---CCCccccHHHHHHH
Confidence 4344333 4779999888754 3445566666555431 111221 223444444433 34455655555555
Q ss_pred HHHHhhCCHHH-H--HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh---hhhccchhhhHHHHHHhhhccCCCCh
Q 000934 195 ASLASSLSDDL-L--AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG---YRFGPHLGDTVPVLIDYCTSASENDE 268 (1219)
Q Consensus 195 ~~l~~~~~~~~-~--~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~---~~~~~~l~~iip~ll~~~~~~~~~d~ 268 (1219)
-+++..-.... + ..-++.++....+... ...+.++-.++..-| ..|.+|+..++.. +.. .+++
T Consensus 437 iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D-----~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~----v~~--~~~e 505 (708)
T PF05804_consen 437 INLALNKRNAQLMCEGNGLQSLMKRALKTRD-----PLLLKLIRNISQHDGPLKELFVDFIGDLAKI----VSS--GDSE 505 (708)
T ss_pred HHHhcCHHHHHHHHhcCcHHHHHHHHHhccc-----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----hhc--CCcH
Confidence 55554322221 1 1123333333222221 234567777777664 2455565555544 332 2455
Q ss_pred HHHHHHHHHHHHHHHhCchhhcccHH--HHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHH
Q 000934 269 ELREYSLQALESFLLRCPRDISSYCD--EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVR 346 (1219)
Q Consensus 269 elre~al~~l~~l~~~~~~~~~~~l~--~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR 346 (1219)
+..=.|+.++.++...- -....++. .+++.+.+.+. |.... | .+-
T Consensus 506 e~~vE~LGiLaNL~~~~-ld~~~ll~~~~llp~L~~~L~--~g~~~--------------------------d----Dl~ 552 (708)
T PF05804_consen 506 EFVVECLGILANLTIPD-LDWAQLLQEYNLLPWLKDLLK--PGASE--------------------------D----DLL 552 (708)
T ss_pred HHHHHHHHHHHhcccCC-cCHHHHHHhCCHHHHHHHHhC--CCCCC--------------------------h----HHH
Confidence 55555555555553221 12222332 35566655553 22110 0 133
Q ss_pred HHHHHHHHHHHhcCchhhHHH--HHHHHHHHHhhhccc--chhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHH
Q 000934 347 RAAAKCLAALIVSRPEMLSKL--YEEACPKLIDRFKER--EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQ 422 (1219)
Q Consensus 347 ~~Aa~~l~~li~~~~~~l~~~--~~~i~p~Li~~~~d~--~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 422 (1219)
-.++..++++.. .++ .... ...+++.|++.|+.. +.+....++-+|..++.+.. -+..+-.
T Consensus 553 LE~Vi~~gtla~-d~~-~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~-------------tr~~ll~ 617 (708)
T PF05804_consen 553 LEVVILLGTLAS-DPE-CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE-------------TREVLLK 617 (708)
T ss_pred HHHHHHHHHHHC-CHH-HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH-------------HHHHHHh
Confidence 445566666553 221 1111 234566666665332 24455677778888887632 1122222
Q ss_pred HHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHh
Q 000934 423 EVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVV 457 (1219)
Q Consensus 423 ~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~ 457 (1219)
. ..++..+...+.+++..+| ..|=.+|.-+++.
T Consensus 618 ~-~~~~~ylidL~~d~N~~ir-~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 618 E-TEIPAYLIDLMHDKNAEIR-KVCDNALDIIAEY 650 (708)
T ss_pred c-cchHHHHHHHhcCCCHHHH-HHHHHHHHHHHHh
Confidence 2 4577888999999999999 8888888877764
No 109
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=1.1 Score=58.35 Aligned_cols=341 Identities=16% Similarity=0.157 Sum_probs=187.2
Q ss_pred CChHHHHHHHHHHH--HhccCccchhhHHHHHHHHHHhhhcCh------hhHHHHHHHHHHHhc---CC-Ccch-hh---
Q 000934 39 ADADLEVKLSNIVV--QQLDDVAGDVSGLAVKCLAPLVKKVSE------PRVVEMTDKLCIKLL---NG-KDQH-RD--- 102 (1219)
Q Consensus 39 ~~~~~~~~v~~~ll--~~L~D~~~eVq~~A~k~l~~l~~~~~~------~~~~~l~~~L~~~~~---~~-~~~~-r~--- 102 (1219)
.+.+....+.++|+ ..|..++.+||-...=|++.+.+-+.+ .++..+..-++..+. +. ++.. |.
T Consensus 41 ~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~l 120 (1266)
T KOG1525|consen 41 LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYL 120 (1266)
T ss_pred hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHH
Confidence 45566777777777 567899999999999999999876554 233333333333332 11 1111 11
Q ss_pred ---HHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHh----hhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 000934 103 ---IASIALKTIIAEVTTSSLAQSIHTSLTPQLTKG----ITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSAL 175 (1219)
Q Consensus 103 ---~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~----l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~l 175 (1219)
++-+- -.++-.++. ++.+++.++.. +.++ ++.--...+++++.++..+-. ....++.++
T Consensus 121 letl~~~k-~~l~~~l~d-------~~e~~~~~f~~f~d~~~~~--~~~~v~~~~~i~~~li~e~d~----v~~e~L~~l 186 (1266)
T KOG1525|consen 121 LETLAKVK-FCLLMLLED-------CQELVHELFRTFFDLARKG--HPKKVFNMLDIAIMLITEEDT----VQSELLDVL 186 (1266)
T ss_pred HHHHHHhH-HHheeeccc-------hHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHhhcc----chHHHHHHH
Confidence 11111 011112222 23334443332 2222 222222255566655544322 345677777
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHHhhhhhccchhhhHH
Q 000934 176 LPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKG-AKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVP 254 (1219)
Q Consensus 176 l~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~-~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip 254 (1219)
+..|-.+....++.|...-..++..+++.....+-..+.+.+.... .....+..+...+-.+-+.+|.- |-.|+|
T Consensus 187 l~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~l----l~~vip 262 (1266)
T KOG1525|consen 187 LENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQL----LLAVIP 262 (1266)
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHH----HHHHHH
Confidence 7777666666666666655555555555543333333333332111 11234556667777776666543 566788
Q ss_pred HHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCC
Q 000934 255 VLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANE 334 (1219)
Q Consensus 255 ~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~ 334 (1219)
.+..-+. .++++.|-.|....+.+.......+..-.+.+....+..+.
T Consensus 263 ~l~~eL~---se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~----------------------------- 310 (1266)
T KOG1525|consen 263 QLEFELL---SEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFN----------------------------- 310 (1266)
T ss_pred HHHHHHh---cchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhc-----------------------------
Confidence 8877776 47889999998888877665443333222333333322221
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCC
Q 000934 335 YTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNEL 414 (1219)
Q Consensus 335 ~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~ 414 (1219)
|.+-.||.+..++....+.+.|+..... ...+.-++.+.++.||.....++... .
T Consensus 311 -----D~~~~vR~~~v~~~~~~l~~~~~~~~~~----~~~~~l~~~~~D~~~rir~~v~i~~~-~--------------- 365 (1266)
T KOG1525|consen 311 -----DISVEVRMECVESIKQCLLNNPSIAKAS----TILLALRERDLDEDVRVRTQVVIVAC-D--------------- 365 (1266)
T ss_pred -----cCChhhhhhHHHHhHHHHhcCchhhhHH----HHHHHHHhhcCChhhhheeeEEEEEe-e---------------
Confidence 2233689999999998888888644332 12222334455555554322111100 0
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHH
Q 000934 415 NPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVV 456 (1219)
Q Consensus 415 ~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~ 456 (1219)
-......+.|.+++.+...+.|+.+++| ..|++.|.++-.
T Consensus 366 -v~~~~l~~~~~ll~~~~eR~rDKk~~VR-~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 366 -VMKFKLVYIPLLLKLVAERLRDKKIKVR-KQAMNGLAQLYK 405 (1266)
T ss_pred -hhHhhhhhhHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHH
Confidence 0011223455588999999999999999 999998888766
No 110
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.32 E-value=0.0017 Score=64.73 Aligned_cols=113 Identities=20% Similarity=0.318 Sum_probs=89.5
Q ss_pred hHHHHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhCCHHH------------------------------------H-HH
Q 000934 167 DHERLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSDDL------------------------------------L-AK 208 (1219)
Q Consensus 167 ~~~~l~~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~~------------------------------------~-~~ 208 (1219)
.+|.+++.++..++.++ +.+|+.+++++|.++..-+..+ + .-
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~v 86 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTV 86 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHH
Confidence 47999999999998774 6899999999998885433221 1 11
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHH
Q 000934 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1219)
Q Consensus 209 l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~ 283 (1219)
.+..++..++++.. +.....+++++..|.++.+.+..||+++++|.+++.++. -++.+||..++-+..++.
T Consensus 87 vi~~L~~iL~D~sL-s~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~---~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 87 VINALMRILRDPSL-SSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRT---CPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence 45566777777765 356668899999999999989999999999999999984 455999999988887764
No 111
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.28 E-value=0.91 Score=56.08 Aligned_cols=363 Identities=17% Similarity=0.197 Sum_probs=199.5
Q ss_pred HHHHHHHHHHhhCCHHH---HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh--hhhccchhhhHHHHHHhhhcc
Q 000934 189 KSVSCIASLASSLSDDL---LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG--YRFGPHLGDTVPVLIDYCTSA 263 (1219)
Q Consensus 189 ~a~~~l~~l~~~~~~~~---~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~--~~~~~~l~~iip~ll~~~~~~ 263 (1219)
.++..|.+++.-..... -..+++.++..|+..+ .+..-.++.++..++-... ..+. -..++|.+.+.+..
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n--~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s- 342 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDREN--EELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPS- 342 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcC-
Confidence 45666777765443331 2457777888887654 3555556666666653221 2222 24578888888873
Q ss_pred CCCChHHHHHHHHHHHHHHHhCchhhcccHH--HHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcc
Q 000934 264 SENDEELREYSLQALESFLLRCPRDISSYCD--EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDA 341 (1219)
Q Consensus 264 ~~~d~elre~al~~l~~l~~~~~~~~~~~l~--~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~ 341 (1219)
+++++++.++..+-++.- ....++.+- .++|.+..++. ||
T Consensus 343 --~~~~l~~~aLrlL~NLSf--d~~~R~~mV~~GlIPkLv~LL~-d~--------------------------------- 384 (708)
T PF05804_consen 343 --ENEDLVNVALRLLFNLSF--DPELRSQMVSLGLIPKLVELLK-DP--------------------------------- 384 (708)
T ss_pred --CCHHHHHHHHHHHHHhCc--CHHHHHHHHHCCCcHHHHHHhC-CC---------------------------------
Confidence 567888889888877642 122232221 13344444443 22
Q ss_pred cHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhh-cccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHH
Q 000934 342 SWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRF-KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLL 420 (1219)
Q Consensus 342 swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~-~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L 420 (1219)
+.|..+.++|..+.......-..-+..++|.+++.+ ...++.+..+++..+..+....++ ...+
T Consensus 385 --~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn-------------aqlm 449 (708)
T PF05804_consen 385 --NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN-------------AQLM 449 (708)
T ss_pred --chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH-------------HHHH
Confidence 234556666666544322111123445677777664 334556666655444444322110 0011
Q ss_pred H--HHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHh
Q 000934 421 K--QEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVL 498 (1219)
Q Consensus 421 ~--~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~ 498 (1219)
. .-++.+++... +.++ ...+.+++.++.+- +.....+...+..+...+.... +.....+++..++.+.
T Consensus 450 ~~g~gL~~L~~ra~---~~~D-----~lLlKlIRNiS~h~-~~~k~~f~~~i~~L~~~v~~~~-~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 450 CEGNGLQSLMKRAL---KTRD-----PLLLKLIRNISQHD-GPLKELFVDFIGDLAKIVSSGD-SEEFVVECLGILANLT 519 (708)
T ss_pred HhcCcHHHHHHHHH---hccc-----HHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHhcc
Confidence 1 12344443332 2111 23346777777653 3344444444555555555443 3578888888888874
Q ss_pred ccCCCCCchhhhh--hhHHHHHHHhcCCc--hHHHHHHHHHHHHHHHhccCCccCCCCCCcccHH--HHHHHHHHHhhhc
Q 000934 499 SSHSPPVFHPYIK--ALSSPVLAAVGERY--YKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQ--PIYNAIMSRLTNQ 572 (1219)
Q Consensus 499 ~~~~~~~~~~~l~--~i~p~l~~~l~d~~--~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~--~l~~~ll~~l~~~ 572 (1219)
-. ...+...+. .++|.+...+.... ..+.-+++-.++.++.. + ..++.+- .+++.+++.+...
T Consensus 520 ~~--~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d--~-------~~A~lL~~sgli~~Li~LL~~k 588 (708)
T PF05804_consen 520 IP--DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD--P-------ECAPLLAKSGLIPTLIELLNAK 588 (708)
T ss_pred cC--CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC--H-------HHHHHHHhCChHHHHHHHHHhh
Confidence 32 234555553 57888888875432 25777777777766531 1 2223322 5566667777777
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcc--cccchhhhHHHHHHHhh--cCCchHHHHHHHHHHHhcC
Q 000934 573 DQDQEVKECAISCMGLVISTFGD--NLGAELPACLPVLVDRM--GNEITRLTAVKAFAVIAAS 631 (1219)
Q Consensus 573 d~d~~vr~~Ai~alg~l~~~~g~--~l~~~~~~~l~~L~~~L--~~e~~r~~a~~al~~i~~s 631 (1219)
..|.|.--+.++++..++.|-.. .+-.. ..+...+.+.+ +|...|..+=.+|+.|+..
T Consensus 589 qeDdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 589 QEDDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred CchHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 77889889999999999887421 11111 22334444544 4667888888888888754
No 112
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.26 E-value=0.026 Score=63.06 Aligned_cols=195 Identities=13% Similarity=0.163 Sum_probs=128.6
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHH
Q 000934 377 DRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVV 456 (1219)
Q Consensus 377 ~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~ 456 (1219)
..+.|+....|.+++..+..++.+.- ..+.+.....+|+..+.+.++..+.+.+ .-++.+++-++-
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~-------------~~d~v~~~~~tL~~~~~k~lkkg~~~E~-~lA~~~l~Ll~l 115 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRY-------------LPDFVEDRRETLLDALLKSLKKGKSEEQ-ALAARALALLAL 115 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcc-------------cHHHHHHHHHHHHHHHHHHhccCCHHHH-HHHHHHHHHHhh
Confidence 34456667899999999888886532 2346677888999999999986655455 567777887777
Q ss_pred hcc--hhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHH--hccCCCCCchhhhhhhHHHHHHHh--c-C------
Q 000934 457 VLP--DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLV--LSSHSPPVFHPYIKALSSPVLAAV--G-E------ 523 (1219)
Q Consensus 457 ~~~--~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l--~~~~~~~~~~~~l~~i~p~l~~~l--~-d------ 523 (1219)
..+ ..-...+..+.|.+.+.+.|.......|..++.+|+.+ +.+.+++.... .-..+..++... + |
T Consensus 116 tlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~-~~~~le~if~~~~~~~~~~~~~~ 194 (309)
T PF05004_consen 116 TLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEE-LMESLESIFLLSILKSDGNAPVV 194 (309)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHH-HHHHHHHHHHHHhcCcCCCcccc
Confidence 654 33345788899999999998765456777776665544 33333333321 112333222211 1 1
Q ss_pred ---CchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhc
Q 000934 524 ---RYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFG 594 (1219)
Q Consensus 524 ---~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g 594 (1219)
+.+.+...|+..++-++..+.+ ..+..++...++.+...|. ..|.+||-.|-.+++-+.....
T Consensus 195 ~~~~~~~l~~aAL~aW~lLlt~~~~------~~~~~~~~~~~~~l~~lL~--s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 195 AAEDDAALVAAALSAWALLLTTLPD------SKLEDLLEEALPALSELLD--SDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhh
Confidence 1346889999999988866532 1244566667777777775 3478999999999998876653
No 113
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.25 E-value=1.1 Score=56.51 Aligned_cols=228 Identities=17% Similarity=0.133 Sum_probs=144.1
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhc-----cCc-----cchhhHHHHHHHHHHh
Q 000934 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQL-----DDV-----AGDVSGLAVKCLAPLV 74 (1219)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L-----~D~-----~~eVq~~A~k~l~~l~ 74 (1219)
.+..|++.+-++....|..|...|+..+....-..+....+.++-.++..+ +|= -.-||.+.++.|+.+.
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l 157 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL 157 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence 345566667788889999988888887766433333344444444444333 231 1478999999999999
Q ss_pred hhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHH
Q 000934 75 KKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILC 154 (1219)
Q Consensus 75 ~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~ 154 (1219)
+.+-+..+.+.++.+.+.+..+.-+.|.....++|..+. ... +.....+..+++...+++++. +..|+..|...+.
T Consensus 158 ~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~a-ir~-d~l~~~~~~vl~~~i~~L~ds--~ddv~~~aa~~l~ 233 (1549)
T KOG0392|consen 158 KHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVA-IRQ-DLLFQLLNLVLDFVIEGLEDS--DDDVRSVAAQFLV 233 (1549)
T ss_pred HhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhhhhhc--chHHHHHHHHHhh
Confidence 999999999999999999888877888899999998775 222 233345667778888899886 5789999998888
Q ss_pred HHHHHhhhhhhHhHHHHHHHHhhhhc---CCh---HHHHHHHHHHHHHHHhhCC-HHH------HHHHHHHHHHHhhcCC
Q 000934 155 DVLHKFGNLMSNDHERLLSALLPQLS---ANQ---ASVRKKSVSCIASLASSLS-DDL------LAKATIEVVRNLRSKG 221 (1219)
Q Consensus 155 ~l~~~~g~~l~~~~~~l~~~ll~~l~---~~~---~~vrk~a~~~l~~l~~~~~-~~~------~~~l~~~ll~~l~~~~ 221 (1219)
.+...+.+........++..++..+. +-. ..+|.. +..+..... .++ -..++|.++..+.+.
T Consensus 234 ~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~l----l~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~- 308 (1549)
T KOG0392|consen 234 PAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHL----LDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHT- 308 (1549)
T ss_pred hhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHH----HHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHH-
Confidence 87777644433444444444443332 111 122211 111111110 001 123556665555543
Q ss_pred CChHHHHHHHHHHHHHHHHhh
Q 000934 222 AKPEMIRTNIQMVGALSRAVG 242 (1219)
Q Consensus 222 ~~~~~~~~~i~~l~~l~~~~~ 242 (1219)
+ ..+|+.++..+..+...-+
T Consensus 309 i-~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 309 I-SSVRRAALETLAMLLEADD 328 (1549)
T ss_pred H-HHHHHHHHHHHHHHHhcCC
Confidence 2 2577788888888877654
No 114
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.77 Score=54.62 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=76.6
Q ss_pred ccCCccchHhHHHHHHhhhhccCcccchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHhhccCCC
Q 000934 940 CESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQD 1019 (1219)
Q Consensus 940 ~~~~~e~~r~~~ae~LG~l~~~~p~~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~D~~ 1019 (1219)
..|.+++||+.+..+||-++..+|+.+...+.-+..+-+|.+|+.+.-++.-.+...+. +.++.-+=.+..|+.
T Consensus 564 VsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~------~eAi~lLepl~~D~~ 637 (929)
T KOG2062|consen 564 VSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL------KEAINLLEPLTSDPV 637 (929)
T ss_pred ccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc------HHHHHHHhhhhcChH
Confidence 55777899999999999999999987655444444577999999988888877776653 233332323556988
Q ss_pred hHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHH
Q 000934 1020 RHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLY 1053 (1219)
Q Consensus 1020 ~~vR~~a~~~L~~~~~~~p~~i~~~l~~llp~l~ 1053 (1219)
.-||+.|+.++.-+.-.+-+...|.+..+-.++.
T Consensus 638 ~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~ 671 (929)
T KOG2062|consen 638 DFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLE 671 (929)
T ss_pred HHHHHHHHHHHHHHHHhcccccCchHHHHHHHHH
Confidence 8999999999987654444444555554444443
No 115
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.23 E-value=0.051 Score=58.95 Aligned_cols=237 Identities=11% Similarity=0.140 Sum_probs=140.5
Q ss_pred HHHHhccCccchhhHHHHHHHHHHhhhcC-----hhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHH
Q 000934 50 IVVQQLDDVAGDVSGLAVKCLAPLVKKVS-----EPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSI 124 (1219)
Q Consensus 50 ~ll~~L~D~~~eVq~~A~k~l~~l~~~~~-----~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~ 124 (1219)
.|=..|+|.++.+|..|..+|+.+...++ .+++..+++..+..+.+.. -.. .+..|+..++ .+.. +....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~-~~l~gl~~L~-~~~~--~~~~~ 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQ-PALKGLLALV-KMKN--FSPES 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHH-HHHHHHHHHH-hCcC--CChhh
Confidence 34467889999999999999999987766 4567778888887773221 112 2356666666 3322 21222
Q ss_pred HHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhCCH
Q 000934 125 HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSD 203 (1219)
Q Consensus 125 ~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~ 203 (1219)
...++-.+++...-+.-....|...+.++..+++++...+....+..+..++...+.++ |.-=.-+...+..+....+-
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 33344444443322222467899999999999999988776666777777777765432 32222344444444444331
Q ss_pred HHHHHHHHHHHHHh--------hcCCCCh--HHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHH
Q 000934 204 DLLAKATIEVVRNL--------RSKGAKP--EMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREY 273 (1219)
Q Consensus 204 ~~~~~l~~~ll~~l--------~~~~~~~--~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~ 273 (1219)
....+.+...+ +.+..++ -.++..-.++..... +...| .+..+|.+++-+.+ +...++..
T Consensus 158 ---~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~f---a~~~~p~LleKL~s---~~~~~K~D 227 (262)
T PF14500_consen 158 ---SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPLF---APFAFPLLLEKLDS---TSPSVKLD 227 (262)
T ss_pred ---chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHhh---HHHHHHHHHHHHcC---CCcHHHHH
Confidence 22333333322 2222211 122221122221111 12333 35689999998874 56778988
Q ss_pred HHHHHHHHHHhCch-hhcccHHHHHHHHH
Q 000934 274 SLQALESFLLRCPR-DISSYCDEILHLTL 301 (1219)
Q Consensus 274 al~~l~~l~~~~~~-~~~~~l~~ii~~~l 301 (1219)
+++++...+..++. .+.+|+.++-..+.
T Consensus 228 ~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 228 SLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999888887764 58888888876653
No 116
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.22 E-value=0.0075 Score=61.77 Aligned_cols=110 Identities=17% Similarity=0.260 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHH
Q 000934 343 WKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQ 422 (1219)
Q Consensus 343 wkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 422 (1219)
+.||.-+..+++.+...+|..++++ +|.+..+++|.++.||..++.++..|+..-- - .
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~----~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~--i----------------k 59 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPY----LPNLYKCLRDEDPLVRKTALLVLSHLILEDM--I----------------K 59 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhH----HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc--e----------------e
Confidence 5799999999999999999766654 5666677899999999999999999986411 1 1
Q ss_pred HHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHh-cchhhhhhhhhhhHhHHH
Q 000934 423 EVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVV-LPDCLADHIGSLIPGIEK 475 (1219)
Q Consensus 423 ~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~-~~~~l~~~~~~l~~~l~~ 475 (1219)
.-+.++..+...+.|+++.+| ..|-.+|.++... .|..+..+++.++..+..
T Consensus 60 ~k~~l~~~~l~~l~D~~~~Ir-~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 60 VKGQLFSRILKLLVDENPEIR-SLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred ehhhhhHHHHHHHcCCCHHHH-HHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 123444555677789999999 8888899998887 455565566665554443
No 117
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.20 E-value=0.036 Score=63.69 Aligned_cols=187 Identities=19% Similarity=0.209 Sum_probs=114.5
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHH
Q 000934 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1219)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~ 84 (1219)
.+..++.-+.+.|+.+|.-|...|. ..-....++.+...+.|+++.||..|+.++|.+-. +..++.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~-----------~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~---~~a~~~ 109 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALG-----------ELGSEEAVPLLRELLSDEDPRVRDAAADALGELGD---PEAVPP 109 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHh-----------hhchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---hhHHHH
Confidence 4555666667777777777776642 12245788889999999999999999998886532 233333
Q ss_pred HHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccC----------CChhHHHHHHHHHH
Q 000934 85 MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKD----------MNTEIRCECLDILC 154 (1219)
Q Consensus 85 l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~----------~~~~v~~~al~~L~ 154 (1219)
++..|-. +.+..+|..+..+|..+-.. .-++.++..+++.. ....+|..+...++
T Consensus 110 li~~l~~---d~~~~vR~~aa~aL~~~~~~------------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~ 174 (335)
T COG1413 110 LVELLEN---DENEGVRAAAARALGKLGDE------------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG 174 (335)
T ss_pred HHHHHHc---CCcHhHHHHHHHHHHhcCch------------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH
Confidence 3333332 56667888888888764422 11334444444422 01134444444444
Q ss_pred HHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 000934 155 DVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMV 234 (1219)
Q Consensus 155 ~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l 234 (1219)
.+ ..+.....+...+.++...||..|..+++.+.... ..+.+.+...+.++++ .+|..++.++
T Consensus 175 ~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~--~vr~~~~~~l 237 (335)
T COG1413 175 EL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESL--EVRKAALLAL 237 (335)
T ss_pred Hc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCH--HHHHHHHHHh
Confidence 33 12444555666677777789999999988877643 2344555566666554 6776666666
Q ss_pred HHH
Q 000934 235 GAL 237 (1219)
Q Consensus 235 ~~l 237 (1219)
|.+
T Consensus 238 ~~~ 240 (335)
T COG1413 238 GEI 240 (335)
T ss_pred ccc
Confidence 654
No 118
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.99 Score=53.83 Aligned_cols=423 Identities=16% Similarity=0.182 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhh------------------h-
Q 000934 185 SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR------------------F- 245 (1219)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~------------------~- 245 (1219)
-++-++.+.+..+..+.-..-|+++...++..+..... .+-..-++..+-+|-....++ +
T Consensus 105 fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~-~~~~dfflkvllaIdsEiad~dv~rT~eei~knnliKDaMR 183 (980)
T KOG2021|consen 105 FIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSA-ISGLDFFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMR 183 (980)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccc-hhhHHHHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHH
Confidence 57888888888777665555566666666666554321 111122222222221111000 0
Q ss_pred ccchhhhHHHHHHhhhccCC-CChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCccccccc
Q 000934 246 GPHLGDTVPVLIDYCTSASE-NDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYE 324 (1219)
Q Consensus 246 ~~~l~~iip~ll~~~~~~~~-~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~ 324 (1219)
...+++++..-.+.+..-+. -++++--.|+++.++|+...-=.+-. -+..++++.+++..
T Consensus 184 ~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIa-Nd~f~nLLy~fl~i------------------ 244 (980)
T KOG2021|consen 184 DNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIA-NDYFLNLLYKFLNI------------------ 244 (980)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhh-chhHHHHHHHHHhH------------------
Confidence 11344444444444432111 26677777788877777654311110 12334555555531
Q ss_pred ccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhH--HHHHHHHHHHH-hhhcccchhHHHHHHHHHHHHHHHh
Q 000934 325 EEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLS--KLYEEACPKLI-DRFKEREENVKMDVFNTFIELVRQT 401 (1219)
Q Consensus 325 ~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~--~~~~~i~p~Li-~~~~d~~~~Vr~~~~~~l~~l~~~~ 401 (1219)
-.+|-+|+.|+-.+++..-+-++ .+++.+...+- -.+...+..+-.+.+..+..++...
T Consensus 245 ------------------eelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~ 306 (980)
T KOG2021|consen 245 ------------------EELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGF 306 (980)
T ss_pred ------------------HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhc
Confidence 15899999999999987532222 13333322210 1112222223345667777777765
Q ss_pred cccC--ccccCCCCCCh-h-HHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcch--hhh----hhhhhhhH
Q 000934 402 GNVT--KGQIDNNELNP-R-WLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPD--CLA----DHIGSLIP 471 (1219)
Q Consensus 402 ~~~~--~~~~~~~~~~~-~-~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~--~l~----~~~~~l~~ 471 (1219)
|..- .|.+-..+..+ . ..+...+-++++.+.+.+.+....+- ...+.++......+.+ .++ .++..++.
T Consensus 307 gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit-~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~ill 385 (980)
T KOG2021|consen 307 GVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDIT-AKIFPFLSDYLAFLKKLKALSSPQKVPLHKILL 385 (980)
T ss_pred ceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHHHHHhhcccccchhhccHHHHHH
Confidence 5321 01100000111 0 01222333377777777776544333 3444444443322211 122 25666666
Q ss_pred hHHHhhc-------CCC-Cc-------chhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHH
Q 000934 472 GIEKSLN-------DKS-ST-------SNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVC 536 (1219)
Q Consensus 472 ~l~~~l~-------d~~-~~-------~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l 536 (1219)
.+..-+. |.+ ++ ..+|..--.+...+ ...+|+.+...+.+-+..-+..-+...+....-|+..+
T Consensus 386 ai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti-~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiyll 464 (980)
T KOG2021|consen 386 AIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTI-VVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLL 464 (980)
T ss_pred HHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 6655442 211 11 12333322333333 33455555444444444433333455566777788777
Q ss_pred HHHHHhccCCccCC-CCCCc--ccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhccccc---chhhhHHHHHHH
Q 000934 537 GELVRVLRPSVEGL-GFDFK--PYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLG---AELPACLPVLVD 610 (1219)
Q Consensus 537 ~~l~~~l~~~~~~~-~~~~~--~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~---~~~~~~l~~L~~ 610 (1219)
=.+.++++....+. ..+.. ..+..++..++.. .-....-+.-++.-+..+++.. ..++ .+++.++..+++
T Consensus 465 y~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~ts---qv~~h~h~lVqLlfmE~ivRY~-kff~~esq~ip~vL~aFld 540 (980)
T KOG2021|consen 465 YNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTS---QVLAHDHELVQLLFMELIVRYN-KFFSTESQKIPLVLNAFLD 540 (980)
T ss_pred HHHhhccccccccccCccccHHHHHHHHHHHHHHc---ccccCCchHHHHHHHHHHHHHH-HHHhcchhhhHHHHHHHcc
Confidence 77777765432111 11222 1222333322221 1111112344555566565532 2222 266777777764
Q ss_pred h--h--cCCchHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 000934 611 R--M--GNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFL 652 (1219)
Q Consensus 611 ~--L--~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L 652 (1219)
. + +|+.+|..|.-...+...+ .+.++-|++++++..+.+.|
T Consensus 541 ~rglhn~ne~Vr~RawYLF~RfVKl-Lkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 541 SRGLHNKNENVRLRAWYLFTRFVKL-LKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred chhccccccccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 2 2 5667777776666655532 23344566666666555544
No 119
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=97.13 E-value=0.18 Score=58.21 Aligned_cols=262 Identities=18% Similarity=0.200 Sum_probs=162.1
Q ss_pred hcCCCcchhhhhHHHHHHHhccccCCCChHHHHH----HHHHHHHhcc------Cc-cchhhHHHHHHHHHHh------h
Q 000934 13 ITGKDKDFRYMATSDLLNELNKESFKADADLEVK----LSNIVVQQLD------DV-AGDVSGLAVKCLAPLV------K 75 (1219)
Q Consensus 13 ~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~----v~~~ll~~L~------D~-~~eVq~~A~k~l~~l~------~ 75 (1219)
+.+.|.+-|.=|=..|.+.++......+.....+ +++.+-+-+. || +.++-.+|.||+|-+. .
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 3456777777676667777765443334433333 3333333332 23 5677899999999665 5
Q ss_pred hcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHh-hcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHH
Q 000934 76 KVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIA-EVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILC 154 (1219)
Q Consensus 76 ~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~-~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~ 154 (1219)
.++++....+++..+..+.+++.. +.++..+|-.+-. +++..-+.......++.. +..+.+.-+...+..+.+.++-
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~-K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~-l~~i~~~~~s~si~~erL~i~~ 159 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSP-KSICTHYLWCLSDQKFSPKIMTSDRVERLLAA-LHNIKNRFPSKSIISERLNIYK 159 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCCCcccchhhHHHHHHH-HHHhhccCCchhHHHHHHHHHH
Confidence 678888888999999888765533 4555555554322 444311112222222222 2334432235778999999999
Q ss_pred HHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH-HHHHHH------------------HHHHH
Q 000934 155 DVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-LLAKAT------------------IEVVR 215 (1219)
Q Consensus 155 ~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~~~l~------------------~~ll~ 215 (1219)
.++..++..+..+...=++.+++.+-+....+|.+|..++..+...++.+ .+...+ +.+..
T Consensus 160 ~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~ 239 (372)
T PF12231_consen 160 RLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKE 239 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHH
Confidence 99999999887776666677777777777789998888877776666543 121111 11222
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHhhh---hhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHH
Q 000934 216 NLRSKGAKPEMIRTNIQMVGALSRAVGY---RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1219)
Q Consensus 216 ~l~~~~~~~~~~~~~i~~l~~l~~~~~~---~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~ 283 (1219)
.+.+.+ .-..+.+.++.+..-.+. +-.+|++..+...-.+++ ..|..+|..|+.++..++-
T Consensus 240 mi~~~~----~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn---~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 240 MIKSKD----EYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFN---SSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred HHhCcC----CcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHH
Confidence 222211 123567777776665552 334577888777777777 4688999999999988764
No 120
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.12 E-value=0.0052 Score=61.86 Aligned_cols=151 Identities=26% Similarity=0.304 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHh-CchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCC-CCCCcccHHHHH
Q 000934 270 LREYSLQALESFLLR-CPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEY-TDDEDASWKVRR 347 (1219)
Q Consensus 270 lre~al~~l~~l~~~-~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~-~dddD~swkVR~ 347 (1219)
+|-.|+.+++.+++. -++.+..|++.++|-. ... +.+... .-. .=-.|.+.|||.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~--~~~-~~~~~~--------------------sLlt~il~Dp~~kvR~ 58 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDS--VLQ-GRPATP--------------------SLLTCILKDPSPKVRA 58 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCC--CCc-CCCCCc--------------------chhHHHHcCCchhHHH
Confidence 688999999999999 6677888888777633 110 000000 000 001245679999
Q ss_pred HHHHHHHHHHhcCchhh-------------HHHHHHHHH-------HHHhhh-cccchhHHHHHHHHHHHHHHHhcccCc
Q 000934 348 AAAKCLAALIVSRPEML-------------SKLYEEACP-------KLIDRF-KEREENVKMDVFNTFIELVRQTGNVTK 406 (1219)
Q Consensus 348 ~Aa~~l~~li~~~~~~l-------------~~~~~~i~p-------~Li~~~-~d~~~~Vr~~~~~~l~~l~~~~~~~~~ 406 (1219)
+|+.++..++.....++ .++-.++.- .|+..+ +|.+..+-..+++++..++..+
T Consensus 59 aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~t----- 133 (182)
T PF13251_consen 59 AAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQAT----- 133 (182)
T ss_pred HHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccC-----
Confidence 99999999987653221 111111111 122222 5667778888999999998765
Q ss_pred cccCCCCCChhHHHH-HHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhc
Q 000934 407 GQIDNNELNPRWLLK-QEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVL 458 (1219)
Q Consensus 407 ~~~~~~~~~~~~~L~-~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~ 458 (1219)
|...+. ..++.+++.+...+.+++..++ .+++.+++.+....
T Consensus 134 ---------PY~rL~~~ll~~~v~~v~~~l~~~d~~v~-v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 134 ---------PYHRLPPGLLTEVVTQVRPLLRHRDPNVR-VAALSCLGALLSVQ 176 (182)
T ss_pred ---------ChhhcCHhHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCC
Confidence 444453 4678899999999988888899 99999999887653
No 121
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.08 E-value=0.17 Score=59.93 Aligned_cols=293 Identities=17% Similarity=0.225 Sum_probs=154.0
Q ss_pred cHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHH
Q 000934 342 SWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLK 421 (1219)
Q Consensus 342 swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~ 421 (1219)
+.++++-|+..+......+|++-+. .+-.+++...|.+..||..++..+-.+++.. .
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-------------------~ 91 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEE----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-------------------P 91 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHH----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T---------------------
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHH----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-------------------H
Confidence 4589999999999999999975554 4445556668899999999999998887643 3
Q ss_pred HHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcc-hhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhcc
Q 000934 422 QEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLP-DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 500 (1219)
Q Consensus 422 ~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~-~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 500 (1219)
++++.++..|.++|...++... ..+=..|.++...-| +.|...+.++.+. +..+..+|..++.|+..-+..
T Consensus 92 ~~v~kvaDvL~QlL~tdd~~E~-~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-------~~~de~~Re~~lkFl~~kl~~ 163 (556)
T PF05918_consen 92 EHVSKVADVLVQLLQTDDPVEL-DAVKNSLMSLLKQDPKGTLTGLFSQIESS-------KSGDEQVRERALKFLREKLKP 163 (556)
T ss_dssp T-HHHHHHHHHHHTT---HHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHH----------HS-HHHHHHHHHHHHHHGGG
T ss_pred HHHhHHHHHHHHHHhcccHHHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHhc-------ccCchHHHHHHHHHHHHHHhh
Confidence 4688899999999987665444 444445555544332 2233333333321 112356899999999888877
Q ss_pred CCCCCchh--hh-hhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhh-c---C
Q 000934 501 HSPPVFHP--YI-KALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN-Q---D 573 (1219)
Q Consensus 501 ~~~~~~~~--~l-~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~-~---d 573 (1219)
..++.+.| -+ .-++..+.+.++| |..+=+..+-.+++.+.-=. ...-.+-.+.|++.+.+...- . -
T Consensus 164 l~~~~~~p~~E~e~~i~~~ikkvL~D----VTaeEF~l~m~lL~~lk~~~---~~~t~~g~qeLv~ii~eQa~Ld~~f~~ 236 (556)
T PF05918_consen 164 LKPELLTPQKEMEEFIVDEIKKVLQD----VTAEEFELFMSLLKSLKIYG---GKQTIEGRQELVDIIEEQADLDQPFDP 236 (556)
T ss_dssp S-TTTS---HHHHHHHHHHHHHHCTT------HHHHHHHHHHHHTSGG------GSSHHHHHHHHHHHHHHHTTTS---S
T ss_pred CcHHHhhchHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHhCcccc---ccCChHHHHHHHHHHHHHhccCCCCCC
Confidence 77777773 23 3455555566665 34444555556666542200 011234457788877765421 1 1
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHh----hc--CCchHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 000934 574 QDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDR----MG--NEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAE 647 (1219)
Q Consensus 574 ~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~----L~--~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~ 647 (1219)
.|.+.-.+-+.|+-.-+--+.... .-...+..+++. +. .+..+..-++++..++......+....++.+...
T Consensus 237 sD~e~Idrli~C~~~Alp~fs~~v--~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~ 314 (556)
T PF05918_consen 237 SDPESIDRLISCLRQALPFFSRGV--SSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQL 314 (556)
T ss_dssp SSHHHHHHHHHHHHHHGGG-BTTB----HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhhHHhcCCC--ChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Confidence 245666677777665332221111 112333333332 22 3456777888888887543333345555555555
Q ss_pred HHHHHH--HhhhHHHHHHHHHHHHHHHHh
Q 000934 648 LTAFLR--KANRALRQATLGTMNSLVVAY 674 (1219)
Q Consensus 648 L~~~L~--~~~~~lr~~al~~L~~l~~~~ 674 (1219)
|..++- +....+.-.-++|+--..+..
T Consensus 315 L~~ymP~~~~~~~l~fs~vEcLL~afh~L 343 (556)
T PF05918_consen 315 LKKYMPSKKTEPKLQFSYVECLLYAFHQL 343 (556)
T ss_dssp HHTTS----------HHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCcccchHhhHHHHHHHHH
Confidence 544442 234445555566655554443
No 122
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.07 E-value=0.024 Score=65.55 Aligned_cols=150 Identities=16% Similarity=0.078 Sum_probs=94.0
Q ss_pred HHHHHHHh-cCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHH
Q 000934 6 MAAILEKI-TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1219)
Q Consensus 6 l~~ll~~~-~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~ 84 (1219)
+..++..+ .+.|+.+|+.|..-|. . .+. ...++.|+..|.|+++.||..+++.||.+ +.. .
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~---~-----~~~---~~~~~~L~~~L~d~~~~vr~aaa~ALg~i----~~~---~ 117 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALL---A-----QED---ALDLRSVLAVLQAGPEGLCAGIQAALGWL----GGR---Q 117 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHh---c-----cCC---hHHHHHHHHHhcCCCHHHHHHHHHHHhcC----Cch---H
Confidence 44455556 4667777777654441 1 111 12488889999999999999999999854 333 3
Q ss_pred HHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhh
Q 000934 85 MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM 164 (1219)
Q Consensus 85 l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l 164 (1219)
....|...+.+++..+|..+.-++...- . .-.+.+...+++. ++.|+..++.+|+.+-.
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~r~----~---------~~~~~L~~~L~d~--d~~Vra~A~raLG~l~~------ 176 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGAHR----H---------DPGPALEAALTHE--DALVRAAALRALGELPR------ 176 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhc----c---------ChHHHHHHHhcCC--CHHHHHHHHHHHHhhcc------
Confidence 4445555555666666654443332211 0 0123455556554 68999999999987632
Q ss_pred hHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHH
Q 000934 165 SNDHERLLSALLPQLSANQASVRKKSVSCIASLA 198 (1219)
Q Consensus 165 ~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~ 198 (1219)
....+.+...+.+.++.||..|+.+++.++
T Consensus 177 ----~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 177 ----RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ----ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 122333445588999999999999987664
No 123
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.23 Score=60.86 Aligned_cols=113 Identities=17% Similarity=0.225 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhhcCCCCh
Q 000934 149 CLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD----DLLAKATIEVVRNLRSKGAKP 224 (1219)
Q Consensus 149 al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~----~~~~~l~~~ll~~l~~~~~~~ 224 (1219)
.++.++.+..-.|..+.++....+-.++..+.++...++.-|..|+-.++..++- .++..=.++++..+.....+.
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~ 647 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTS 647 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccC
Confidence 4455666666667766555444444445556778888888888888888776543 244444455554443211101
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhh
Q 000934 225 EMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCT 261 (1219)
Q Consensus 225 ~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~ 261 (1219)
......-..+..+++..+....||+++++..+...+.
T Consensus 648 ~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD 684 (1014)
T KOG4524|consen 648 GMSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLD 684 (1014)
T ss_pred CCCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Confidence 1122344667777787777788999999998887664
No 124
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.01 E-value=0.00084 Score=53.54 Aligned_cols=55 Identities=24% Similarity=0.288 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHH
Q 000934 143 TEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASL 197 (1219)
Q Consensus 143 ~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l 197 (1219)
+.||..++.+|+.+....+..+.++.+.+++.+.+.|+|++..||..|+.+|+.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999888888889999999999999999999999999999999864
No 125
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=1.3 Score=52.85 Aligned_cols=87 Identities=10% Similarity=0.095 Sum_probs=67.9
Q ss_pred HhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhh
Q 000934 166 NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRF 245 (1219)
Q Consensus 166 ~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 245 (1219)
++.-.+.+.+-..|+||+.-||...+.-|+. .-.+++++.++|.+.+.|.+.+. -+|+.|+-|+.+|-+. ...+
T Consensus 95 ~EMILvcna~RkDLQHPNEyiRG~TLRFLck---LkE~ELlepl~p~IracleHrhs--YVRrNAilaifsIyk~-~~~L 168 (948)
T KOG1058|consen 95 HEMILVCNAYRKDLQHPNEYIRGSTLRFLCK---LKEPELLEPLMPSIRACLEHRHS--YVRRNAILAIFSIYKN-FEHL 168 (948)
T ss_pred HHHHHHHHHHhhhccCchHhhcchhhhhhhh---cCcHHHhhhhHHHHHHHHhCcch--hhhhhhheeehhHHhh-hhhh
Confidence 3445566777788999999999888776654 44677899999999999998874 6999999999999876 3556
Q ss_pred ccchhhhHHHHHH
Q 000934 246 GPHLGDTVPVLID 258 (1219)
Q Consensus 246 ~~~l~~iip~ll~ 258 (1219)
-|-.|+++...+.
T Consensus 169 ~pDapeLi~~fL~ 181 (948)
T KOG1058|consen 169 IPDAPELIESFLL 181 (948)
T ss_pred cCChHHHHHHHHH
Confidence 6777777766654
No 126
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.99 E-value=0.029 Score=60.31 Aligned_cols=190 Identities=13% Similarity=0.212 Sum_probs=125.0
Q ss_pred hHHHHHHHHHhc-CCCcchhhhhHHHHHHHhccccCCCChHHH--HHHHHHHHHhccCccchhhHHHHHHHHHHhhhcCh
Q 000934 3 NLQMAAILEKIT-GKDKDFRYMATSDLLNELNKESFKADADLE--VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE 79 (1219)
Q Consensus 3 ~~~l~~ll~~~~-~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~--~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~ 79 (1219)
+..+..++.-+. +.||-++.+|+.-+.+.-. +....+.. -..++.+.+.|++|++.||..|..++..+......
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa---f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAA---FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 467778888876 4689999999988876432 22222333 34788899999999999999999999988754332
Q ss_pred -hhHHHHHHHHHHHhcCC--CcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHH
Q 000934 80 -PRVVEMTDKLCIKLLNG--KDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDV 156 (1219)
Q Consensus 80 -~~~~~l~~~L~~~~~~~--~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l 156 (1219)
..+..+++++|..+.+. +.... ..||+.+. ++....-...++...+|.+++-+..+ +..++..++.+|..|
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~lns~~Q---~agLrlL~-nLtv~~~~~~~l~~~i~~ll~LL~~G--~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSPLNSEVQ---LAGLRLLT-NLTVTNDYHHMLANYIPDLLSLLSSG--SEKTKVQVLKVLVNL 161 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHH-ccCCCcchhhhHHhhHHHHHHHHHcC--ChHHHHHHHHHHHHh
Confidence 35678889999877654 22333 33444433 33332222344455677777777665 478899999999888
Q ss_pred HHHh---hhhhhHhHHHHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhCCHH
Q 000934 157 LHKF---GNLMSNDHERLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSDD 204 (1219)
Q Consensus 157 ~~~~---g~~l~~~~~~l~~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~ 204 (1219)
..+- ++.+. ...+..++..++... ..+-.+++..+..+......+
T Consensus 162 S~np~~~~~Ll~---~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 162 SENPDMTRELLS---AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred ccCHHHHHHHHh---ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 6552 12222 234555666666653 477888888888887655443
No 127
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.98 E-value=0.29 Score=54.81 Aligned_cols=188 Identities=21% Similarity=0.315 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhhhhhhHh--HHHHH-HHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChH
Q 000934 149 CLDILCDVLHKFGNLMSND--HERLL-SALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPE 225 (1219)
Q Consensus 149 al~~L~~l~~~~g~~l~~~--~~~l~-~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~ 225 (1219)
++.+...++++....+.+. ...++ ..+.|.+.++++.||+.|+.|+|.++-.. .+.-.+.++.+...++.. +.+
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld-~~~a~~~l~l~~~~~~~~--~~~ 79 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLD-KELAKEHLPLFLQALQKD--DEE 79 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHhC--CHH
Confidence 4566777777766555542 33555 44559999999999999999999887654 344455566677777443 358
Q ss_pred HHHHHHHHHHHHHHHhhhhhcc-ch--------hhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHH
Q 000934 226 MIRTNIQMVGALSRAVGYRFGP-HL--------GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEI 296 (1219)
Q Consensus 226 ~~~~~i~~l~~l~~~~~~~~~~-~l--------~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~i 296 (1219)
++..+++++..+....|..+-+ .- ..+...+.+++. .++++++..+.+++..+...-- +.+ .+.+
T Consensus 80 v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~---~~~~~~~~~a~EGl~KLlL~~~--i~~-~~~v 153 (298)
T PF12719_consen 80 VKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLD---SENPELQAIAVEGLCKLLLSGR--ISD-PPKV 153 (298)
T ss_pred HHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHhcCC--CCc-HHHH
Confidence 8999999999999887743332 22 357888888887 3588899999888877755421 111 3455
Q ss_pred HHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Q 000934 297 LHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKL 375 (1219)
Q Consensus 297 i~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~L 375 (1219)
+..++-.. |+|.-.+ .-++|++=...+.......++.-..+-+..+|.+
T Consensus 154 L~~Lll~y-F~p~t~~-----------------------------~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l 202 (298)
T PF12719_consen 154 LSRLLLLY-FNPSTED-----------------------------NQRLRQCLSVFFPVYASSSPENQERLAEAFLPTL 202 (298)
T ss_pred HHHHHHHH-cCcccCC-----------------------------cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 55443222 4664211 0167777666666666665533333333344444
No 128
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.96 E-value=0.085 Score=62.37 Aligned_cols=265 Identities=17% Similarity=0.149 Sum_probs=134.6
Q ss_pred cchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCC
Q 000934 18 KDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGK 97 (1219)
Q Consensus 18 ~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~ 97 (1219)
+....+|..-.-++. +.-++..+..++.++.+.+|.+..||.+|+|-|..+.+. .++.+..+++.|.+.+.+++
T Consensus 36 ~k~K~Laaq~I~kff-----k~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~-~~~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFF-----KHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD-NPEHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp HHHHHHHHHHHHHHH-----CC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHH-----hhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh-HHHHHhHHHHHHHHHHhccc
Confidence 334444444444433 334677889999999999999999999999999888764 34688999999999998777
Q ss_pred cchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhh-ccCCChhHHHHHHHHHHHHHHHhhhhh-h--Hh-HHHHH
Q 000934 98 DQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGIT-LKDMNTEIRCECLDILCDVLHKFGNLM-S--ND-HERLL 172 (1219)
Q Consensus 98 ~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~-~~~~~~~v~~~al~~L~~l~~~~g~~l-~--~~-~~~l~ 172 (1219)
....++...+|.+++..=|. ..+..++..+. ..+.+..+|+.++..|.+=+...+..+ . .+ ..-+.
T Consensus 110 ~~E~~~v~~sL~~ll~~d~k---------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~ 180 (556)
T PF05918_consen 110 PVELDAVKNSLMSLLKQDPK---------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIV 180 (556)
T ss_dssp HHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHH
Confidence 77788888888877753222 11122222222 011256788888877765555444433 2 11 22333
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHh---hCCHHHHHHHHHHHHHHhh--cC--CCChHHHHHHHHHHHHHHHH-----
Q 000934 173 SALLPQLSANQASVRKKSVSCIASLAS---SLSDDLLAKATIEVVRNLR--SK--GAKPEMIRTNIQMVGALSRA----- 240 (1219)
Q Consensus 173 ~~ll~~l~~~~~~vrk~a~~~l~~l~~---~~~~~~~~~l~~~ll~~l~--~~--~~~~~~~~~~i~~l~~l~~~----- 240 (1219)
..+-..|.|=...==+-.+..|..+-. .-+..-.+.+++.+.+... .+ ..+++.....++|+..-.-.
T Consensus 181 ~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v 260 (556)
T PF05918_consen 181 DEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGV 260 (556)
T ss_dssp HHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCC
Confidence 444444544222111222333333333 2234445667776665442 11 11234443444444321111
Q ss_pred hhhhhccch-hhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCch-hhcccHHHHHHHHHHhc
Q 000934 241 VGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR-DISSYCDEILHLTLEYL 304 (1219)
Q Consensus 241 ~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~-~~~~~l~~ii~~~l~~l 304 (1219)
.+.+|-.|+ ..|+|. ++ +-+++.+-..+.++..++..|+. +...+++.+++.++.||
T Consensus 261 ~Sskfv~y~~~kvlP~----l~---~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ym 319 (556)
T PF05918_consen 261 SSSKFVNYMCEKVLPK----LS---DLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYM 319 (556)
T ss_dssp --HHHHHHHHHHTCCC----TT--------HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHhcCC----hh---hCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhC
Confidence 012233322 333432 22 12344555577777777777763 45567777777777666
No 129
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=1.5 Score=52.50 Aligned_cols=147 Identities=8% Similarity=0.148 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCC-----cchhHHHHHHHHHHHh
Q 000934 424 VSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSS-----TSNLKIEALTFTRLVL 498 (1219)
Q Consensus 424 ~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~-----~~~~~~~al~~l~~l~ 498 (1219)
+..++--+.+.|..++..+| .-++.+.-.|+.+ ..+.+++..+.+-+.+.++ ....|..-+..++...
T Consensus 315 l~~l~mDvLrvLss~dldvr-~Ktldi~ldLvss------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ca 387 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVR-SKTLDIALDLVSS------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACA 387 (948)
T ss_pred HHHHHHHHHHHcCcccccHH-HHHHHHHHhhhhh------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh
Confidence 44555556677888888888 8888887777764 2345555555554443321 1223444444444442
Q ss_pred ccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHH
Q 000934 499 SSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEV 578 (1219)
Q Consensus 499 ~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~v 578 (1219)
-.|..+-..++|.++..+.|.+..-+...+..+.+.++.+... -...+..+++.+-+ ++ ..++
T Consensus 388 -----v~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L-------r~~ii~~l~~~~~~-ir----S~ki 450 (948)
T KOG1058|consen 388 -----VKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL-------RASIIEKLLETFPQ-IR----SSKI 450 (948)
T ss_pred -----hcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH-------HHHHHHHHHHhhhh-hc----cccc
Confidence 2455677889999999999998887777777777777654211 11223333322211 11 2345
Q ss_pred HHHHHHHHHHHHHhhc
Q 000934 579 KECAISCMGLVISTFG 594 (1219)
Q Consensus 579 r~~Ai~alg~l~~~~g 594 (1219)
-..|++-+|+.+...+
T Consensus 451 ~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 451 CRGALWILGEYCEGLS 466 (948)
T ss_pred chhHHHHHHHHHhhhH
Confidence 5777888887776554
No 130
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.94 E-value=0.46 Score=54.47 Aligned_cols=209 Identities=14% Similarity=0.234 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHhhCCHH---HHHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHHHHHhhhh--h--ccchhhhHH
Q 000934 185 SVRKKSVSCIASLASSLSDD---LLAKATIEVVRNLRSKGA---KPEMIRTNIQMVGALSRAVGYR--F--GPHLGDTVP 254 (1219)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~---~~~~l~~~ll~~l~~~~~---~~~~~~~~i~~l~~l~~~~~~~--~--~~~l~~iip 254 (1219)
.+|+.++..+...+.-..+. +++.++..+++.|.+-.. .+.....+++.++++++...++ | .+++..|+.
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie 190 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIE 190 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHH
Confidence 57888888888777665443 244555555655543221 1245556788888888765432 3 457777655
Q ss_pred HH-HHhhh--cc------------------CCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCC
Q 000934 255 VL-IDYCT--SA------------------SENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDN 313 (1219)
Q Consensus 255 ~l-l~~~~--~~------------------~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~ 313 (1219)
.+ +-.+. .. ..+.+.-|.+|...+..+++..++.+.+.+...+..++.-...+|+
T Consensus 191 ~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~---- 266 (370)
T PF08506_consen 191 KVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPS---- 266 (370)
T ss_dssp HTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT----
T ss_pred HhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCc----
Confidence 43 21221 10 0122336778888888888887766665555555444432221221
Q ss_pred CCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcC-----c--h-----hhHHHH-HHHHHHHHhhhc
Q 000934 314 MEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR-----P--E-----MLSKLY-EEACPKLIDRFK 380 (1219)
Q Consensus 314 ~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~-----~--~-----~l~~~~-~~i~p~Li~~~~ 380 (1219)
..|+-+.+|..+++++.... | + .+..+| +.++|-|. .-.
T Consensus 267 ---------------------------~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~ 318 (370)
T PF08506_consen 267 ---------------------------NNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDV 318 (370)
T ss_dssp ---------------------------T-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS
T ss_pred ---------------------------ccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccC
Confidence 24998999999999987653 1 1 133444 45678775 222
Q ss_pred ccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccch
Q 000934 381 EREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTK 443 (1219)
Q Consensus 381 d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r 443 (1219)
...+-+|.++++.+...-.+. | .+++..+++.+.+.|.+++..++
T Consensus 319 ~~~piLka~aik~~~~Fr~~l--------------~----~~~l~~~~~~l~~~L~~~~~vv~ 363 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQL--------------P----KEQLLQIFPLLVNHLQSSSYVVH 363 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-------------------HHHHHHHHHHHHHHTTSS-HHHH
T ss_pred CCCcchHHHHHHHHHHHHhhC--------------C----HHHHHHHHHHHHHHhCCCCcchh
Confidence 445778889998887764432 2 35677788888888988776555
No 131
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.94 E-value=0.21 Score=67.54 Aligned_cols=295 Identities=13% Similarity=0.100 Sum_probs=167.7
Q ss_pred HHHHHHH-hcCCCcchhhhhHHHHHH----HhccccCCCChHHHHHHHHHHHHhcc-CccchhhHHHHHHHHHHhhhcCh
Q 000934 6 MAAILEK-ITGKDKDFRYMATSDLLN----ELNKESFKADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSE 79 (1219)
Q Consensus 6 l~~ll~~-~~~~d~d~R~mAl~dL~~----~l~~~~~~~~~~~~~~v~~~ll~~L~-D~~~eVq~~A~k~l~~l~~~~~~ 79 (1219)
+...+.+ ..+++..+|+.|+.-|++ .+.++.+ ....-.+.+++-+...+. ..+.+||...++|+.+++.....
T Consensus 1138 l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL-~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~ 1216 (1780)
T PLN03076 1138 LSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREEL-ANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN 1216 (1780)
T ss_pred HHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhh-hchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh
Confidence 4444444 356677889999886654 3333211 011223445544444333 55779999999999999864332
Q ss_pred ---hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCC--hhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHH
Q 000934 80 ---PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT--SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILC 154 (1219)
Q Consensus 80 ---~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~--~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~ 154 (1219)
..|..+..-|.....+..+..-..|-..++.++.+.-. +..-......++-.|.+...+.. +.++...|++.|-
T Consensus 1217 nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~-~~nISL~AI~lL~ 1295 (1780)
T PLN03076 1217 NVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRF-NKDISLNAIAFLR 1295 (1780)
T ss_pred hhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcC-cccccHHHHHHHH
Confidence 25888887777665444433334455555555543110 00001233444445544443322 3556666666665
Q ss_pred HHHHHhhh------------------------------------hhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHH
Q 000934 155 DVLHKFGN------------------------------------LMSNDHERLLSALLPQLSANQASVRKKSVSCIASLA 198 (1219)
Q Consensus 155 ~l~~~~g~------------------------------------~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~ 198 (1219)
.+...+.. .....+-.++..+-....+++..||.+|++.|=.+.
T Consensus 1296 ~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL 1375 (1780)
T PLN03076 1296 FCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTL 1375 (1780)
T ss_pred HHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 44332210 001224445555555667889999999999875443
Q ss_pred ----hhCCHHHH----HHHHHHHHHHhhcC----------------C-CCh----HHHHHHHHHHHHHHHHhhh---hhc
Q 000934 199 ----SSLSDDLL----AKATIEVVRNLRSK----------------G-AKP----EMIRTNIQMVGALSRAVGY---RFG 246 (1219)
Q Consensus 199 ----~~~~~~~~----~~l~~~ll~~l~~~----------------~-~~~----~~~~~~i~~l~~l~~~~~~---~~~ 246 (1219)
..++.+.| ..++-.++..++.. + ... =...+..+++..++.-... .+.
T Consensus 1376 ~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~ 1455 (1780)
T PLN03076 1376 RNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVN 1455 (1780)
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544 44455555554321 0 000 0245666666666654443 344
Q ss_pred cchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcc-cHHHHHHHHHHhcc
Q 000934 247 PHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISS-YCDEILHLTLEYLS 305 (1219)
Q Consensus 247 ~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~-~l~~ii~~~l~~l~ 305 (1219)
+.|+.++..+..++. .+++.+...+..+|..++..++..|.+ ++..++..+.+.+.
T Consensus 1456 ~~L~~~l~ll~~ci~---q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~ 1512 (1780)
T PLN03076 1456 PLLKKVLMLLVSFIK---RPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAAN 1512 (1780)
T ss_pred HHHHHHHHHHHHHHc---CchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 456666666666666 478889999999999999988877664 77788777776654
No 132
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.94 E-value=0.001 Score=45.57 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=26.5
Q ss_pred HHHHHHHhccCccchhhHHHHHHHHHHhhh
Q 000934 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKK 76 (1219)
Q Consensus 47 v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~ 76 (1219)
+++.++++++|++++||..|++|||.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999864
No 133
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.92 E-value=0.0095 Score=63.32 Aligned_cols=272 Identities=13% Similarity=0.095 Sum_probs=155.1
Q ss_pred HHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhh--hhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCc
Q 000934 429 KSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGS--LIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVF 506 (1219)
Q Consensus 429 ~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~--l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~ 506 (1219)
+.+.+.|.+.+..+| .-+..+|+.++...++ ..+|+-+ .+..++..+..+...-.+--.+...|+.++.+..|..-
T Consensus 160 PlfiqlL~s~~~~V~-eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~ 237 (526)
T COG5064 160 PLFIQLLSSTEDDVR-EQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPD 237 (526)
T ss_pred HHHHHHHcCchHHHH-HHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCc
Confidence 344556667777788 6666688877654333 2333221 23444444443221112233456678889887666544
Q ss_pred hhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHH-HHHHHHHHHhhhcCCCHHHHHHHHHH
Q 000934 507 HPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQ-PIYNAIMSRLTNQDQDQEVKECAISC 585 (1219)
Q Consensus 507 ~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~-~l~~~ll~~l~~~d~d~~vr~~Ai~a 585 (1219)
-..+.+.+|.+.+.+...++++...|+++++-+... |. ......++ .+...+++.|.. .+..+...|+..
T Consensus 238 w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg--~~-----E~i~avld~g~~~RLvElLs~--~sa~iqtPalR~ 308 (526)
T COG5064 238 WSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG--PN-----EKIQAVLDVGIPGRLVELLSH--ESAKIQTPALRS 308 (526)
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC--cH-----HHHHHHHhcCCcHHHHHHhcC--ccccccCHHHHh
Confidence 456888899999999888889999999998888642 10 00111110 111223444443 356678899999
Q ss_pred HHHHHHhhcccccch-hhhHHHHHHHhhc--CCchHHHHHHHHHHHhcCCCCCchhHHH-HHHHHHHHHHHHHhhhHHHH
Q 000934 586 MGLVISTFGDNLGAE-LPACLPVLVDRMG--NEITRLTAVKAFAVIAASPLHIDLTCVL-EHVIAELTAFLRKANRALRQ 661 (1219)
Q Consensus 586 lg~l~~~~g~~l~~~-~~~~l~~L~~~L~--~e~~r~~a~~al~~i~~s~~~~~~~~~l-~~~l~~L~~~L~~~~~~lr~ 661 (1219)
+|.++......-+-. --..++.+...|. .+..|..|+..+.+|.... ..+....+ ..++|.|...+...+--.|.
T Consensus 309 vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGn-teqiqavid~nliPpLi~lls~ae~k~kK 387 (526)
T COG5064 309 VGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGN-TEQIQAVIDANLIPPLIHLLSSAEYKIKK 387 (526)
T ss_pred hcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCC-HHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 998865332221111 1122333333333 3467889999998886322 11222222 34677788888888877888
Q ss_pred HHHHHHHHHHHHhCCCCCcchH-----HHHHHHHhhhcCCCChhhhHHHHHHHHHHhh
Q 000934 662 ATLGTMNSLVVAYGDKIGASAY-----EVIIVELSTLISDSDLHMTALALELCCTLMA 714 (1219)
Q Consensus 662 ~al~~L~~l~~~~~~~l~~~~~-----~~il~~l~~~l~~~d~~~~~~al~~l~~l~~ 714 (1219)
.|.-++......... . ++.+ +..+..|+.++.-.|-.+.+.++.++..+++
T Consensus 388 EACWAisNatsgg~~-~-PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 388 EACWAISNATSGGLN-R-PDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHHHHhhhccccC-C-chHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 888887776543211 1 1211 2234445666665666666677777766665
No 134
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.88 E-value=0.022 Score=57.50 Aligned_cols=161 Identities=24% Similarity=0.309 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHhc-CchhhHHHHHHHHHHH-----------Hhh-hcccchhHHHHHHHHHHHHHHHhcccCccccC
Q 000934 344 KVRRAAAKCLAALIVS-RPEMLSKLYEEACPKL-----------IDR-FKEREENVKMDVFNTFIELVRQTGNVTKGQID 410 (1219)
Q Consensus 344 kVR~~Aa~~l~~li~~-~~~~l~~~~~~i~p~L-----------i~~-~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~ 410 (1219)
|||.+|..||.++++. .+..+..+|..++|.- +.. ++|++..||..+++++..+++..+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~------- 73 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKP------- 73 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHH-------
Confidence 6899999999999998 6666667777777642 222 3788899999999999888874320
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHH
Q 000934 411 NNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEA 490 (1219)
Q Consensus 411 ~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~a 490 (1219)
.|. .-.+.+ .+ ..++.-| ... +..-+-++=..+...++.... .......
T Consensus 74 --------~L~------------~Ae~~~--~~-~~sFtsl---S~t----La~~i~~lH~~Ll~~L~~E~~-~~~l~q~ 122 (182)
T PF13251_consen 74 --------FLA------------QAEESK--GP-SGSFTSL---SST----LASMIMELHRGLLLALQAEKS-PPVLTQL 122 (182)
T ss_pred --------HHH------------HHHhcC--CC-CCCcccH---HHH----HHHHHHHHHHHHHHHHhcccc-cHHHHHH
Confidence 111 011111 11 1111111 111 111122222334445544432 4566678
Q ss_pred HHHHHHHhccCCCCCchh-hhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 000934 491 LTFTRLVLSSHSPPVFHP-YIKALSSPVLAAVGERYYKVTAEALRVCGELVRV 542 (1219)
Q Consensus 491 l~~l~~l~~~~~~~~~~~-~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~ 542 (1219)
+.++..++.+.+-+.+.+ ++..++..+...+.+.+..++..++.+++.++..
T Consensus 123 lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 123 LKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 888999988876666665 7888888888888888889999999999999865
No 135
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.75 Score=55.12 Aligned_cols=199 Identities=17% Similarity=0.165 Sum_probs=132.3
Q ss_pred hhHHHHHHHHHHHhcCC-CcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHH
Q 000934 80 PRVVEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLH 158 (1219)
Q Consensus 80 ~~~~~l~~~L~~~~~~~-~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~ 158 (1219)
+...+.+++||..+.+. -.+.|.-|..|||.+-.. +...|--.=++.|++.++.+-.+++.-..++|++.-+..
T Consensus 18 ~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srk-----YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~ 92 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK-----YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS 92 (970)
T ss_pred ccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 44567888888887654 345688899999987643 333333344566666666543467888888888877765
Q ss_pred Hh---------------hhhhhHh---HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHH------HHHHHHHH
Q 000934 159 KF---------------GNLMSND---HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL------AKATIEVV 214 (1219)
Q Consensus 159 ~~---------------g~~l~~~---~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~------~~l~~~ll 214 (1219)
+- |..+... .+..+..++..+...+-.||..|++.+.++....+.+.- +.=+..++
T Consensus 93 ~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 93 HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM 172 (970)
T ss_pred cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence 43 2222211 245567777878777778999999999999999888742 33355566
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHhhh--hhccchhhhHHHHHHhhhccC-CCChHHHHHHHHHHHHHHHhCc
Q 000934 215 RNLRSKGAKPEMIRTNIQMVGALSRAVGY--RFGPHLGDTVPVLIDYCTSAS-ENDEELREYSLQALESFLLRCP 286 (1219)
Q Consensus 215 ~~l~~~~~~~~~~~~~i~~l~~l~~~~~~--~~~~~l~~iip~ll~~~~~~~-~~d~elre~al~~l~~l~~~~~ 286 (1219)
..+.+.. ..+|..++-.+..+.+.++. ++. -+..+...++..+.... -+.--+-+.|+..+..+.+..-
T Consensus 173 dlL~Dsr--E~IRNe~iLlL~eL~k~n~~IQKlV-AFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 173 DLLRDSR--EPIRNEAILLLSELVKDNSSIQKLV-AFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred HHHhhhh--hhhchhHHHHHHHHHccCchHHHHH-HHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 6666554 35788899999999998763 222 12555666666666422 1222477889999988887654
No 136
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.86 E-value=0.0072 Score=57.30 Aligned_cols=110 Identities=18% Similarity=0.244 Sum_probs=83.2
Q ss_pred hHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHH-HHHHHHHHhcccCCCCCCCCCCCcccccccccchhh
Q 000934 252 TVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD-EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDE 330 (1219)
Q Consensus 252 iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~-~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~ 330 (1219)
++|.+++.+. +.+.++|+.++.++..++...|.....++. .+++.+.+++..
T Consensus 8 ~i~~l~~~l~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~------------------------ 60 (120)
T cd00020 8 GLPALVSLLS---SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS------------------------ 60 (120)
T ss_pred ChHHHHHHHH---cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC------------------------
Confidence 6777777777 456899999999999999876655555555 677777777741
Q ss_pred ccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHH-HHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 000934 331 SANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYE-EACPKLIDRFKEREENVKMDVFNTFIELV 398 (1219)
Q Consensus 331 ~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~-~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~ 398 (1219)
..++||+.|+.+|+.+....+.....+.. .+++.+++.+++.+..+|..+..++..+.
T Consensus 61 ----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 61 ----------EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred ----------CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 12489999999999998876644444443 37888888888888899988888877653
No 137
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.83 E-value=0.0065 Score=54.04 Aligned_cols=88 Identities=15% Similarity=0.294 Sum_probs=66.2
Q ss_pred hHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHH
Q 000934 129 TPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAK 208 (1219)
Q Consensus 129 ~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~ 208 (1219)
+|.|++.+.+.. ++.+|..++.+|+.+ ..+..++.+...++|+++.||..|+.+|+.+.. +.
T Consensus 1 i~~L~~~l~~~~-~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDP-DPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD-------PE 62 (88)
T ss_dssp HHHHHHHHHTSS-SHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------HH
T ss_pred CHHHHHHHhcCC-CHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HH
Confidence 467778784433 799999999999833 234678888888899999999999999998852 34
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHH
Q 000934 209 ATIEVVRNLRSKGAKPEMIRTNIQMVG 235 (1219)
Q Consensus 209 l~~~ll~~l~~~~~~~~~~~~~i~~l~ 235 (1219)
.++.+.+.+.++++ ..+|..+++++|
T Consensus 63 ~~~~L~~~l~~~~~-~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDD-EVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCc-HHHHHHHHhhcC
Confidence 67777777777653 456888888875
No 138
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.81 E-value=0.18 Score=52.54 Aligned_cols=247 Identities=20% Similarity=0.248 Sum_probs=136.7
Q ss_pred HHHHHHHHhcCC--CcchhhhhHHHHHHHhcccc-------CC-------------CChHHHHHHHHHHHHhccCcc--c
Q 000934 5 QMAAILEKITGK--DKDFRYMATSDLLNELNKES-------FK-------------ADADLEVKLSNIVVQQLDDVA--G 60 (1219)
Q Consensus 5 ~l~~ll~~~~~~--d~d~R~mAl~dL~~~l~~~~-------~~-------------~~~~~~~~v~~~ll~~L~D~~--~ 60 (1219)
.+..+-+-|.+. --..||-|+..|++...... +. +..-.-..-++.+...|.|.+ +
T Consensus 4 ~i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~p 83 (289)
T KOG0567|consen 4 EIETIGNILVNKSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDESQEP 83 (289)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccccch
Confidence 444444445442 23458999999887654321 11 111223446677777777654 7
Q ss_pred hhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHh--hcCChhhhHHHHHhHhHHHHHhhhc
Q 000934 61 DVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIA--EVTTSSLAQSIHTSLTPQLTKGITL 138 (1219)
Q Consensus 61 eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~--~~~~~~~~~~~~~~l~p~L~~~l~~ 138 (1219)
.||.-|.+|||.+.. + ..++.|-.+..++...+++-.-.|++.+=- .+....-..++.. +=|.--....
T Consensus 84 mvRhEAaealga~~~----~---~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S-vdPa~p~~~s- 154 (289)
T KOG0567|consen 84 MVRHEAAEALGAIGD----P---ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYIS-VDPAPPANLS- 154 (289)
T ss_pred HHHHHHHHHHHhhcc----h---hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcccc-CCCCCccccc-
Confidence 899999999998762 2 333344444445556667777777775421 1000000000000 0000000000
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhhhhh--Hh-HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 000934 139 KDMNTEIRCECLDILCDVLHKFGNLMS--ND-HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVR 215 (1219)
Q Consensus 139 ~~~~~~v~~~al~~L~~l~~~~g~~l~--~~-~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~ 215 (1219)
.-.+.|...+|.=-.+..++-..+. .. .+.-+..+...+.+++...|..+..++|.+-.-. -++.+.+
T Consensus 155 --sv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~-------ai~~L~k 225 (289)
T KOG0567|consen 155 --SVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPA-------AIPSLIK 225 (289)
T ss_pred --cHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchh-------hhHHHHH
Confidence 0012222222222223333322221 11 2555677778888888889999999998876422 4556666
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHH
Q 000934 216 NLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFL 282 (1219)
Q Consensus 216 ~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~ 282 (1219)
.|.+....+=+|..+..++|.|+. ++.++.+-++.. |+++-+|++|.-+|...-
T Consensus 226 ~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~---D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 226 VLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLG---DEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcC---CcHHHHHHHHHHHHHHHH
Confidence 666655545678889999999986 335556666666 677789999988886553
No 139
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.80 E-value=1.5 Score=50.81 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=69.7
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHhH------HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH----HHHHHHH
Q 000934 142 NTEIRCECLDILCDVLHKFGNLMSNDH------ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD----LLAKATI 211 (1219)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~------~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~----~~~~l~~ 211 (1219)
..++..+.+-.+.+++...+....-++ +.....+++.|..++.-+...|+..++.++.+-... ....+++
T Consensus 67 ~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~ 146 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFN 146 (429)
T ss_pred cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHH
Confidence 567888888888888877554322222 345566777888888889999999999998653322 2344555
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhh
Q 000934 212 EVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR 244 (1219)
Q Consensus 212 ~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~ 244 (1219)
.+...++++.. ...+..++++++.+.+.-+.|
T Consensus 147 ~l~~~l~~~~~-~~~~~~~v~~L~~LL~~~~~R 178 (429)
T cd00256 147 WLKEQLNNITN-NDYVQTAARCLQMLLRVDEYR 178 (429)
T ss_pred HHHHHhhccCC-cchHHHHHHHHHHHhCCchHH
Confidence 66666665432 356778899999999876654
No 140
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.80 E-value=0.0059 Score=57.90 Aligned_cols=107 Identities=19% Similarity=0.292 Sum_probs=82.1
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH---HHH-HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhc
Q 000934 171 LLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LLA-KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFG 246 (1219)
Q Consensus 171 l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~~-~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 246 (1219)
+++.+...+.++++.+|+.++.+++.++...+.. .+. ..++.+++.+.+++ ..+++.++.+++.++...+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED--EEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC--HHHHHHHHHHHHHHccCcHHHHH
Confidence 5566777778888999999999999999764333 233 67888888887754 47899999999999987654323
Q ss_pred cch-hhhHHHHHHhhhccCCCChHHHHHHHHHHHHHH
Q 000934 247 PHL-GDTVPVLIDYCTSASENDEELREYSLQALESFL 282 (1219)
Q Consensus 247 ~~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~l~ 282 (1219)
.+. ..+++.+++.+. +.+.++|+.+..++..++
T Consensus 86 ~~~~~g~l~~l~~~l~---~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLD---SSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHh---cCCHHHHHHHHHHHHHhh
Confidence 333 347899999887 468899999999988765
No 141
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.77 E-value=0.037 Score=63.56 Aligned_cols=183 Identities=22% Similarity=0.294 Sum_probs=123.8
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhhhccCCCCCccchHHHHHHhcCCCchhHhHHHHHHHHhhhhcCcccchHHH
Q 000934 813 TVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFI 892 (1219)
Q Consensus 813 ~l~~~~~~l~~~~~~~~~~~~laL~~Lgeig~~~~~~~~~~l~~~ll~~l~~~~e~vR~aAa~aLG~l~~~~~~~~lp~i 892 (1219)
.++.+...+.. .+...|.-+...+|+++. ....+.+...+.+.++.||..|+.+||.+.. +..+|.+
T Consensus 44 ~~~~~~~~l~~---~~~~vr~~aa~~l~~~~~-------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~---~~a~~~l 110 (335)
T COG1413 44 AADELLKLLED---EDLLVRLSAAVALGELGS-------EEAVPLLRELLSDEDPRVRDAAADALGELGD---PEAVPPL 110 (335)
T ss_pred hHHHHHHHHcC---CCHHHHHHHHHHHhhhch-------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---hhHHHHH
Confidence 34455555542 245566667667777764 4456778888898899999999999887652 4456777
Q ss_pred HHHhccc-c-chhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCc------------cchHhHHHHHHhhh
Q 000934 893 LDQIDNQ-Q-KKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEE------------EGVRNVVAECLGKI 958 (1219)
Q Consensus 893 l~~l~~~-~-~~~~~~l~alkeii~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~------------e~~r~~~ae~LG~l 958 (1219)
++.+.++ + ..|.....+|+.+-.. .-+..++...+++. ..+|..+++.||.+
T Consensus 111 i~~l~~d~~~~vR~~aa~aL~~~~~~--------------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~ 176 (335)
T COG1413 111 VELLENDENEGVRAAAARALGKLGDE--------------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL 176 (335)
T ss_pred HHHHHcCCcHhHHHHHHHHHHhcCch--------------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc
Confidence 7777743 2 4466666666665321 11233333333322 24788888888876
Q ss_pred hccCcccchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHhhccCCChHHHHHHHHHHHHH
Q 000934 959 ALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTF 1033 (1219)
Q Consensus 959 ~~~~p~~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~D~~~~vR~~a~~~L~~~ 1033 (1219)
.. ....+.+.+.+.+....+|..+..++..+..+. ......|.+.++|++..||..++.+|+..
T Consensus 177 ~~---~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 177 GD---PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred CC---hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 54 445677778888888889999988888766553 23456778899999999999999988763
No 142
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=2.1 Score=51.63 Aligned_cols=281 Identities=15% Similarity=0.158 Sum_probs=156.1
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHH
Q 000934 373 PKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLR 452 (1219)
Q Consensus 373 p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~ 452 (1219)
|.+-+.++...|.|-.++..+...+-..+ .+.+.+-+..+.-.+..+....| .++..+|.
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~~-------------------~r~l~pavs~Lq~flssp~~~lR-faAvRtLn 307 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNTN-------------------SRELAPAVSVLQLFLSSPKVALR-FAAVRTLN 307 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccC-------------------HhhcchHHHHHHHHhcCcHHHHH-HHHHHHHH
Confidence 34434456777888888877666553211 12233356777778888877899 99999999
Q ss_pred HHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHH---HHhcCCchHHH
Q 000934 453 ELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVL---AAVGERYYKVT 529 (1219)
Q Consensus 453 ~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~---~~l~d~~~~v~ 529 (1219)
+++-.+|......-..+ ...+.|.+ ..+ +.-.+..++++.... .++.++..+. .-+.|.+-.+.
T Consensus 308 kvAm~~P~~v~~cN~el----E~lItd~N----rsI-at~AITtLLKTG~e~----sv~rLm~qI~~fv~disDeFKivv 374 (865)
T KOG1078|consen 308 KVAMKHPQAVTVCNLDL----ESLITDSN----RSI-ATLAITTLLKTGTES----SVDRLMKQISSFVSDISDEFKIVV 374 (865)
T ss_pred HHHHhCCccccccchhH----Hhhhcccc----cch-hHHHHHHHHHhcchh----HHHHHHHHHHHHHHhccccceEEe
Confidence 99998876543322222 22233332 222 233445555553322 2344444444 34456655566
Q ss_pred HHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHH
Q 000934 530 AEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLV 609 (1219)
Q Consensus 530 ~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~ 609 (1219)
..|+..+..... .--..++..+...|.. +...+-+...+.++-.++....+ .-...+..|+
T Consensus 375 vdai~sLc~~fp--------------~k~~~~m~FL~~~Lr~-eGg~e~K~aivd~Ii~iie~~pd----sKe~~L~~LC 435 (865)
T KOG1078|consen 375 VDAIRSLCLKFP--------------RKHTVMMNFLSNMLRE-EGGFEFKRAIVDAIIDIIEENPD----SKERGLEHLC 435 (865)
T ss_pred HHHHHHHHhhcc--------------HHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHhCcc----hhhHHHHHHH
Confidence 666655443321 1112233344444443 44456666667776666653322 2234455555
Q ss_pred HhhcCCchHHHHHHHHHHHh-cCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 000934 610 DRMGNEITRLTAVKAFAVIA-ASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIV 688 (1219)
Q Consensus 610 ~~L~~e~~r~~a~~al~~i~-~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~ 688 (1219)
+.+.+-..+.-+.+.++.+. ..|....-+.|+..+... +--.+..+|.+|..|+..+..... ...+.+..
T Consensus 436 efIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNR----viLEn~ivRaaAv~alaKfg~~~~-----~l~~sI~v 506 (865)
T KOG1078|consen 436 EFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNR----VILENAIVRAAAVSALAKFGAQDV-----VLLPSILV 506 (865)
T ss_pred HHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhh----hhhhhhhhHHHHHHHHHHHhcCCC-----CccccHHH
Confidence 55544444555666666665 222112225555544332 234677789999999999883222 23455666
Q ss_pred HHhhhcCCCChhhhHHHHHHHHHHhh
Q 000934 689 ELSTLISDSDLHMTALALELCCTLMA 714 (1219)
Q Consensus 689 ~l~~~l~~~d~~~~~~al~~l~~l~~ 714 (1219)
.+..-+.++|..++..|-..+..+-.
T Consensus 507 llkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 507 LLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 67788888898888876666655543
No 143
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.76 E-value=0.077 Score=66.18 Aligned_cols=224 Identities=15% Similarity=0.119 Sum_probs=142.7
Q ss_pred cCccchhhHHHHHHHHHHhhhcChh---hHHHHHHHHHHHhcCCC-----------------------------------
Q 000934 56 DDVAGDVSGLAVKCLAPLVKKVSEP---RVVEMTDKLCIKLLNGK----------------------------------- 97 (1219)
Q Consensus 56 ~D~~~eVq~~A~k~l~~l~~~~~~~---~~~~l~~~L~~~~~~~~----------------------------------- 97 (1219)
.+.|..+|..|.+++..++..+.+. ....++...|.......
T Consensus 659 ~e~n~~~q~~~~e~~~~L~~~~~~r~p~~~~k~~k~~c~~~~~~p~~~p~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~g 738 (1549)
T KOG0392|consen 659 KEENAMLQPAAAEALAYLIQQCKDRKPNPYGKPLKKACESECVDPSRAPGLGASIRSIHPMVDPLINDYTRMVASNLAPG 738 (1549)
T ss_pred hhhHhHhHHHHHHHHHHHHHHHhccCCCccccHHHHHHhhhcCCcccCCccccccccccccccccccchhhhhccccCcc
Confidence 3677889999999999888654432 22344444444331000
Q ss_pred -c-------chhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHH
Q 000934 98 -D-------QHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHE 169 (1219)
Q Consensus 98 -~-------~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~ 169 (1219)
+ -.|..+-++|+.++..++. ++... ...+...|+..+.......+--...+.++..+....|..+.+ .-
T Consensus 739 ~eea~~~~~~errgael~L~~l~~~fg~-sl~~k-lp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~ 815 (1549)
T KOG0392|consen 739 LEEAQALISFERRGAELFLKILSKMFGG-SLAAK-LPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LG 815 (1549)
T ss_pred hhhhhhhHHHHhhhHHHHHHHHHHHhhH-HHHHh-cchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hh
Confidence 0 0144555666666655443 12111 222334444444432211223333445555555555655544 44
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccch
Q 000934 170 RLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL 249 (1219)
Q Consensus 170 ~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l 249 (1219)
..++.++..+.++...+|-.+..|++.+......+....++..++-.+.+.+ +...|..+...++-+.......+.||.
T Consensus 816 ~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~-~~~~r~~a~e~~~~l~~~l~~~l~~~~ 894 (1549)
T KOG0392|consen 816 SLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLD-KFVRRQGADELIELLDAVLMVGLVPYN 894 (1549)
T ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchh-hHhhhhhHHHHHHHHHHhhcccccccc
Confidence 6677888888999999999999999999887777654445555544444332 234456677888888888888899999
Q ss_pred hhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCc
Q 000934 250 GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1219)
Q Consensus 250 ~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1219)
+-++|.++..+. +..+.+|+++-+++..++...|
T Consensus 895 ~Llv~pllr~ms---d~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 895 PLLVVPLLRRMS---DQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred eeehhhhhcccc---cchHHHHHHHHHHHHHHhcccc
Confidence 999999999887 5788899999999988877665
No 144
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.75 E-value=0.05 Score=62.98 Aligned_cols=187 Identities=14% Similarity=0.039 Sum_probs=119.5
Q ss_pred hHHHHHHhcCCCchhHhHHHHHHHHhhhhcCcccchHHHHHHhccc-cchhHHHHHHHHHHHhhccccchhhhhHHHHHH
Q 000934 854 IENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQ-QKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKI 932 (1219)
Q Consensus 854 l~~~ll~~l~~~~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~-~~~~~~~l~alkeii~~~~~~~~~~~~~~~~~i 932 (1219)
..+.+++.+++++++||.+++.+||.+.. ....+.+...++++ +..|+..+.++...- .. +
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~---~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------~~--~----- 148 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG---RQAEPWLEPLLAASEPPGRAIGLAALGAHR--------HD--P----- 148 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCc---hHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------cC--h-----
Confidence 47889999999999999999999997653 33445666766554 456776665554421 01 1
Q ss_pred HHHHHhhccCCccchHhHHHHHHhhhhccCcccchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhh-------
Q 000934 933 LNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIF------- 1005 (1219)
Q Consensus 933 ~~~L~~~~~~~~e~~r~~~ae~LG~l~~~~p~~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~------- 1005 (1219)
.+.+...+++++..+|..++.+||.+.. ...+|.|...+.+.++.+|..++.++..+=. ..+....+.
T Consensus 149 ~~~L~~~L~d~d~~Vra~A~raLG~l~~---~~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~ 223 (410)
T TIGR02270 149 GPALEAALTHEDALVRAAALRALGELPR---RLSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGG 223 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhcc---ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCc
Confidence 1234444457778899999999999865 4577888888999999999888887753311 111110000
Q ss_pred ----------------HhHHHHHhhccCCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHHHhhhcccccceeeecc
Q 000934 1006 ----------------PEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLG 1069 (1219)
Q Consensus 1006 ----------------~~i~~~l~~l~D~~~~vR~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~elir~v~mg 1069 (1219)
..+..+...++|++ +|+.++.+++.+-. |. .+|.|.....
T Consensus 224 ~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~--p~--------av~~L~~~l~------------ 279 (410)
T TIGR02270 224 PHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREALRAVGLVGD--VE--------AAPWCLEAMR------------ 279 (410)
T ss_pred cHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHHHHHHHcCC--cc--------hHHHHHHHhc------------
Confidence 11223344455543 88888888886332 22 4454554332
Q ss_pred CceeecccChhHHHHHHHHHHHHHhh
Q 000934 1070 PFKHTVDDGLELRKAAFECVDTLLDS 1095 (1219)
Q Consensus 1070 pfkh~~Ddgle~Rk~a~e~l~~ll~~ 1095 (1219)
| ..+|+.|-|++..+...
T Consensus 280 -------d-~~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 280 -------E-PPWARLAGEAFSLITGM 297 (410)
T ss_pred -------C-cHHHHHHHHHHHHhhCC
Confidence 1 12788999888888554
No 145
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.68 E-value=0.46 Score=55.59 Aligned_cols=305 Identities=16% Similarity=0.178 Sum_probs=185.0
Q ss_pred cchhhhhHHHHHHHhcccc--CCCChHHHHHHHHHHHHhcc-----------Cccch--hh-------HHHHHHHHHHhh
Q 000934 18 KDFRYMATSDLLNELNKES--FKADADLEVKLSNIVVQQLD-----------DVAGD--VS-------GLAVKCLAPLVK 75 (1219)
Q Consensus 18 ~d~R~mAl~dL~~~l~~~~--~~~~~~~~~~v~~~ll~~L~-----------D~~~e--Vq-------~~A~k~l~~l~~ 75 (1219)
++.+..+|++|...++... ..++++....+++++-.-+- |++.+ +. ..+-..+-.++.
T Consensus 40 Ke~K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~NifR~lP~~~~~~~~~~~d~~~~e~~WpHL~~vY~il~~~i~ 119 (409)
T PF01603_consen 40 KEIKRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIFRPLPPIPNPSFDPDDDEPFLEPSWPHLQLVYEILLRFIE 119 (409)
T ss_dssp HHSHHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-S-----SS--S-GGG------TTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhccCCCCCcccccCCccccccccccccHhHHHHHHHHHHHHH
Confidence 3447789999999998876 66777777777777653321 11111 11 233344444443
Q ss_pred hcCh-----hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHH
Q 000934 76 KVSE-----PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECL 150 (1219)
Q Consensus 76 ~~~~-----~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al 150 (1219)
.-.. ..-..++..|+..+.++++..|+.....|..+....+. ....+.+.+...+.+.+.... ...--.+.+
T Consensus 120 ~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~--~r~~Ir~~i~~~~~~fi~e~~-~~~gI~elL 196 (409)
T PF01603_consen 120 SPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPN--LRSFIRKSINNIFYRFIYETE-RHNGIAELL 196 (409)
T ss_dssp STT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TT--THHHHHHHHHHHHHHHHHTTS---STHHHHH
T ss_pred CccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCcc-cccCHHHHH
Confidence 2111 12247888888888888888898877788887776653 334455556666666665443 455667889
Q ss_pred HHHHHHHHHhhhhhhH-hHHHHHHHHhhhhcCChHH-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHH
Q 000934 151 DILCDVLHKFGNLMSN-DHERLLSALLPQLSANQAS-VRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIR 228 (1219)
Q Consensus 151 ~~L~~l~~~~g~~l~~-~~~~l~~~ll~~l~~~~~~-vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~ 228 (1219)
++++.++..|..-+.+ +..-+...++|....+... --..=..|+..+...-+ .+...++..++...-.. ++...-
T Consensus 197 eil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp-~l~~~~i~~llk~WP~t--~s~Kev 273 (409)
T PF01603_consen 197 EILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP-SLAEPVIKGLLKHWPKT--NSQKEV 273 (409)
T ss_dssp HHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G-GGHHHHHHHHHHHS-SS---HHHHH
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHhCCCC--CchhHH
Confidence 9999999988766654 5566678889988877642 34444555555554321 13444555555544332 223334
Q ss_pred HHHHHHHHHHHHhh-hhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHH--HHHhCchhhcccHHHHHHHHHHhcc
Q 000934 229 TNIQMVGALSRAVG-YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALES--FLLRCPRDISSYCDEILHLTLEYLS 305 (1219)
Q Consensus 229 ~~i~~l~~l~~~~~-~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~--l~~~~~~~~~~~l~~ii~~~l~~l~ 305 (1219)
..+.-++.++...+ ..|.+....+...+..+++ .+.-.+.|.|+..+.. ++. .+..+-..+++.+...+.
T Consensus 274 ~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~---S~h~qVAErAl~~w~n~~~~~----li~~~~~~i~p~i~~~L~ 346 (409)
T PF01603_consen 274 LFLNELEEILEVLPPEEFQKIMVPLFKRLAKCIS---SPHFQVAERALYFWNNEYFLS----LISQNSRVILPIIFPALY 346 (409)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHT---SSSHHHHHHHHGGGGSHHHHH----HHHCTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHCCHHHHH----HHHhChHHHHHHHHHHHH
Confidence 56777888887665 5778888888888888887 4678888888766632 222 234455666776666553
Q ss_pred cCCCCCCCCCCCcccccccccchhhccCCCCCCCcccH--HHHHHHHHHHHHHHhcCchhhHH
Q 000934 306 YDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASW--KVRRAAAKCLAALIVSRPEMLSK 366 (1219)
Q Consensus 306 ~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~sw--kVR~~Aa~~l~~li~~~~~~l~~ 366 (1219)
..- ..-| .||..|..++..+....|+.+..
T Consensus 347 ~~~-------------------------------~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 347 RNS-------------------------------KNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp STT-------------------------------SS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHH-------------------------------HHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 100 0113 59999999999999888865443
No 146
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.68 E-value=0.061 Score=54.08 Aligned_cols=132 Identities=17% Similarity=0.230 Sum_probs=107.8
Q ss_pred hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHH----HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh
Q 000934 167 DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL----AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG 242 (1219)
Q Consensus 167 ~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~----~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~ 242 (1219)
....+...+...++++++.-|=.++..+..++..++.+.| ...+..+++.+++++. ....+.++.++..|.....
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~-~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDP-PSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhc
Confidence 4566777788888898888899999999999998866643 5677778888888664 5678899999998887653
Q ss_pred -------hhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhc
Q 000934 243 -------YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYL 304 (1219)
Q Consensus 243 -------~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l 304 (1219)
+-..|+++.+++.+++.++ ++...+.++.++..++...|.-++||..++-..+..++
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~-----~~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQ-----DSSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 2258899999999999775 26678889999999999999999999999988887765
No 147
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=1.4 Score=47.32 Aligned_cols=89 Identities=16% Similarity=0.297 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhCCH-HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh-hhccch----hhhHHHHHHhhhcc
Q 000934 190 SVSCIASLASSLSD-DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY-RFGPHL----GDTVPVLIDYCTSA 263 (1219)
Q Consensus 190 a~~~l~~l~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~-~~~~~l----~~iip~ll~~~~~~ 263 (1219)
.+.||..+...... .+...+|+.+-.++..++. .++..++..+|.+.+.+.. .+...+ ..+.|.++.++.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiadda--sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg-- 138 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDA--SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG-- 138 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcc--hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc--
Confidence 45555555544433 3467788888888877664 5777788888888887652 122211 457788888887
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 000934 264 SENDEELREYSLQALESFLL 283 (1219)
Q Consensus 264 ~~~d~elre~al~~l~~l~~ 283 (1219)
.+|+++..+|.+++.+++.
T Consensus 139 -geddeVAkAAiesikrial 157 (524)
T KOG4413|consen 139 -GEDDEVAKAAIESIKRIAL 157 (524)
T ss_pred -CCcHHHHHHHHHHHHHHHh
Confidence 4788998888888877653
No 148
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.59 E-value=0.024 Score=56.63 Aligned_cols=95 Identities=15% Similarity=0.251 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHH
Q 000934 368 YEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGA 447 (1219)
Q Consensus 368 ~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~ 447 (1219)
|+..+|...+.++|.++.-|.-|.+.+..+++..+ . ..+-..+|+++..+.+.|+++++.+. ..+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~-------------~-~kilPvlPqLI~plk~AL~tr~~~V~-~~~ 100 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGG-------------G-EKILPVLPQLIIPLKRALNTRDPEVF-CAT 100 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcc-------------h-hHHHHHHHHHHHHHHHHHhCCCHHHH-HHH
Confidence 66788999999999999999999999999998721 1 25678899999999999999999999 999
Q ss_pred HHHHHHH---HHhcchhhhhhhhhhhHhHHHhh
Q 000934 448 FSVLREL---VVVLPDCLADHIGSLIPGIEKSL 477 (1219)
Q Consensus 448 ~~~L~~L---~~~~~~~l~~~~~~l~~~l~~~l 477 (1219)
+.+|..| ....+..|.+|+.+++|.+.-..
T Consensus 101 L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~ 133 (183)
T PF10274_consen 101 LKALQQLVTSSDMVGEALVPYYRQLLPVLNLFK 133 (183)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999 44557789999999999887433
No 149
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.55 E-value=0.012 Score=52.24 Aligned_cols=87 Identities=24% Similarity=0.211 Sum_probs=65.8
Q ss_pred HHHHHHhc-cCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHH
Q 000934 48 SNIVVQQL-DDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT 126 (1219)
Q Consensus 48 ~~~ll~~L-~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~ 126 (1219)
++.|++.| +|+++.||..|+++||.+ .. +..++.|...+.++++.+|..+..+|+.+= -+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------------~~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----GD---PEAIPALIELLKDEDPMVRRAAARALGRIG------------DP 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----TH---HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----CC---HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------CH
Confidence 46788888 899999999999999944 33 366777777777788888988888887431 24
Q ss_pred hHhHHHHHhhhccCCChhHHHHHHHHHH
Q 000934 127 SLTPQLTKGITLKDMNTEIRCECLDILC 154 (1219)
Q Consensus 127 ~l~p~L~~~l~~~~~~~~v~~~al~~L~ 154 (1219)
..+|.|.+.+.+++ +..+|..+...|+
T Consensus 62 ~~~~~L~~~l~~~~-~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDD-DEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence 56778888887764 6778988888775
No 150
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.46 E-value=0.036 Score=64.90 Aligned_cols=163 Identities=21% Similarity=0.208 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhhccCCccchHhHHHHHHhhhhcc---Ccccc----hHHHHHHhcCCCchhhHHHHhhhHhhhccCCchh
Q 000934 928 SVEKILNLLFNHCESEEEGVRNVVAECLGKIALI---EPAKL----VPALKVRTTSSAAFTRATVVIAIKYSIVERPEKI 1000 (1219)
Q Consensus 928 ~~~~i~~~L~~~~~~~~e~~r~~~ae~LG~l~~~---~p~~~----lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~ 1000 (1219)
++..++..+++..+.++-.||--+...|.++.=. -++.+ .-.+...+.+.-|.+|--++-++-++-.+..+.-
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc
Confidence 4566667777777777777775555555554321 12223 3334445678899999877777776664443221
Q ss_pred hhhhhHhHHHHHhhcc-CCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHHHhhhcccccceeeeccCceeecccCh
Q 000934 1001 DEIIFPEISSFLMLIK-DQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGL 1079 (1219)
Q Consensus 1001 ~~~l~~~i~~~l~~l~-D~~~~vR~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~elir~v~mgpfkh~~Ddgl 1079 (1219)
.+....+...++ ||+.+|||+|+.++..-.. -+|.+...+. |=..
T Consensus 162 ----~~v~n~l~~liqnDpS~EVRRaaLsnI~vdns------------Tlp~IveRar------------------DV~~ 207 (892)
T KOG2025|consen 162 ----CPVVNLLKDLIQNDPSDEVRRAALSNISVDNS------------TLPCIVERAR------------------DVSG 207 (892)
T ss_pred ----ccHHHHHHHHHhcCCcHHHHHHHHHhhccCcc------------cchhHHHHhh------------------hhhH
Confidence 134455555666 9999999999998754222 4565665443 4446
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCchhchHHHHhcccCC-cchhHhhHHHH
Q 000934 1080 ELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLED-HYDVKMPCHLI 1127 (1219)
Q Consensus 1080 e~Rk~a~e~l~~ll~~~~~~~~~~~~~~~~~~~gl~D-~~di~~l~~~~ 1127 (1219)
..||.+|+-+..=++.+. +++..+.. .+..||.| +.+||--+.-+
T Consensus 208 anRrlvY~r~lpkid~r~--lsi~krv~-LlewgLnDRe~sVk~A~~d~ 253 (892)
T KOG2025|consen 208 ANRRLVYERCLPKIDLRS--LSIDKRVL-LLEWGLNDREFSVKGALVDA 253 (892)
T ss_pred HHHHHHHHHhhhhhhhhh--hhHHHHHH-HHHHhhhhhhhHHHHHHHHH
Confidence 789999997777776653 44556663 77899999 88887555433
No 151
>PF05536 Neurochondrin: Neurochondrin
Probab=96.33 E-value=3.9 Score=49.65 Aligned_cols=234 Identities=15% Similarity=0.172 Sum_probs=141.8
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCC-CC-----hHHHHHHHHHHHHhccCc----cchhhHHHHHHHHHH
Q 000934 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFK-AD-----ADLEVKLSNIVVQQLDDV----AGDVSGLAVKCLAPL 73 (1219)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~-~~-----~~~~~~v~~~ll~~L~D~----~~eVq~~A~k~l~~l 73 (1219)
..+...+.-+++.|..-||.|+.-+.+.+...... .+ +..-.++++.||+.-..| ..+-+..|+..+..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 45677777788888666999998888887653211 00 011134555566554433 356678888888877
Q ss_pred hh---hcChhhHHHHHHHHHHHhcCCCc-chhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHH
Q 000934 74 VK---KVSEPRVVEMTDKLCIKLLNGKD-QHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCEC 149 (1219)
Q Consensus 74 ~~---~~~~~~~~~l~~~L~~~~~~~~~-~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~a 149 (1219)
.. -...+++..-++.|.+.+.+..+ ..-+-+..+|..+. ..+. ....-+-...+|.|.+.+.+ .......+
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~-G~~aLl~~g~v~~L~ei~~~---~~~~~E~A 159 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPE-GAKALLESGAVPALCEIIPN---QSFQMEIA 159 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcH-hHHHHHhcCCHHHHHHHHHh---CcchHHHH
Confidence 64 12336677888899988876655 33333444444444 3332 11111223466778777765 35678889
Q ss_pred HHHHHHHHHHhhhhhhHhH----HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCH---H------HHHHHHHHHHHH
Q 000934 150 LDILCDVLHKFGNLMSNDH----ERLLSALLPQLSANQASVRKKSVSCIASLASSLSD---D------LLAKATIEVVRN 216 (1219)
Q Consensus 150 l~~L~~l~~~~g~~l~~~~----~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~---~------~~~~l~~~ll~~ 216 (1219)
+.++..++...+...-... ..+++.+-..+...+...|-..+..|+.+....+. . ....+...+...
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 9999999888775432222 33444444444444445566677777777665521 1 244555555555
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhhh
Q 000934 217 LRSKGAKPEMIRTNIQMVGALSRAVGY 243 (1219)
Q Consensus 217 l~~~~~~~~~~~~~i~~l~~l~~~~~~ 243 (1219)
+++. ...+.|..++.+.+.+....|.
T Consensus 240 L~sr-~~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 240 LQSR-LTPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred HhcC-CCHHHHHHHHHHHHHHHHHhCh
Confidence 5543 3467899999999999998774
No 152
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.27 E-value=0.099 Score=52.60 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhc-chhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhcc
Q 000934 422 QEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVL-PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 500 (1219)
Q Consensus 422 ~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~-~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 500 (1219)
..++.++..+.+.++++++..| ..++.+++.+++.. +..|..+....+..+...++... +...+..++..+..++..
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~r-w~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~-~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSR-WAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPD-PPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence 4577888889999999999999 99999999999886 56677888888999999998754 345666677777776543
Q ss_pred CC--C----CCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHh
Q 000934 501 HS--P----PVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRL 569 (1219)
Q Consensus 501 ~~--~----~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l 569 (1219)
.. | +...|+++.+++.++..+++ ......++.++..++... +..|.||..++-..+.+.+
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~-------ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH-------PTTFRPFANKIESALLSLL 164 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC-------CccccchHHHHHHHHHHHh
Confidence 21 2 33468899999999998876 356678889999988764 3468888888876666543
No 153
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=96.22 E-value=0.21 Score=56.15 Aligned_cols=192 Identities=10% Similarity=0.197 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhh
Q 000934 385 NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLAD 464 (1219)
Q Consensus 385 ~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~ 464 (1219)
.||.++++.+.+.++... .+.......+|+++..+..-.+...+..|.-..++++..++...++.+.+
T Consensus 42 ~iKkeIL~Li~t~i~~~~------------~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~ 109 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAE------------DPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQP 109 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-------------HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHHHhccC------------CHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhh
Confidence 466777777777776543 12223456778888888777776666677556788999999887776666
Q ss_pred hhhhhhHhHHHh----hcC-CCCcchhHHHHHHHHHHHhccCCCCCc---h-hhhhhhHHHHHHHhcCCchHHHHHHHHH
Q 000934 465 HIGSLIPGIEKS----LND-KSSTSNLKIEALTFTRLVLSSHSPPVF---H-PYIKALSSPVLAAVGERYYKVTAEALRV 535 (1219)
Q Consensus 465 ~~~~l~~~l~~~----l~d-~~~~~~~~~~al~~l~~l~~~~~~~~~---~-~~l~~i~p~l~~~l~d~~~~v~~~al~~ 535 (1219)
.++.++..+..+ +.+ -..-+..|..-..+++.+...+. ..+ . ..+..++..+..++++....|...++.+
T Consensus 110 ~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f-~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~ 188 (319)
T PF08767_consen 110 QVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCF-PALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNI 188 (319)
T ss_dssp CHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHT-HHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhH-HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 666666555543 433 23346789999999999988753 222 2 2577889999999999999999999999
Q ss_pred HHHHHHhccCCcc-CCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 000934 536 CGELVRVLRPSVE-GLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVI 590 (1219)
Q Consensus 536 l~~l~~~l~~~~~-~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~ 590 (1219)
+.+++..+..... -...-+..|+..++..++..+.+++.....+..+ ..+..+.
T Consensus 189 l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~-~iL~~Lf 243 (319)
T PF08767_consen 189 LLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQS-QILSNLF 243 (319)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHH-HHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHH-HHHHHHH
Confidence 9999987644100 0022345677788888888887655545555554 3344444
No 154
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.18 E-value=0.053 Score=58.39 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=98.4
Q ss_pred HHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhH---hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH-HH
Q 000934 131 QLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN---DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-LL 206 (1219)
Q Consensus 131 ~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~---~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~ 206 (1219)
+|+..|+..+ ++.++..++-+++.... ..... ..-..++.+...+.++.+.+|.+|+.++..++...... ..
T Consensus 16 ~Ll~lL~~t~-dp~i~e~al~al~n~aa---f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 16 KLLCLLESTE-DPFIQEKALIALGNSAA---FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHhcCC-ChHHHHHHHHHHHhhcc---ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 5555566544 68889998888887532 11111 12234677788899999999999999999998766444 46
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHH
Q 000934 207 AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1219)
Q Consensus 207 ~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~ 283 (1219)
+..++.+.+...+..++++.+..++.++..+.-.. .....+...+|.++..+. ..+..+|..++..+-.+..
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~--~~~~~l~~~i~~ll~LL~---~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN--DYHHMLANYIPDLLSLLS---SGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc--chhhhHHhhHHHHHHHHH---cCChHHHHHHHHHHHHhcc
Confidence 67788888776666566678888889998886432 222334445666666666 3577888888888777654
No 155
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=5.1 Score=49.17 Aligned_cols=355 Identities=14% Similarity=0.107 Sum_probs=196.6
Q ss_pred CcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhc--ccchhHHHHHHHHHHHHHHHhcccCccccCCCCCCh
Q 000934 339 EDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFK--EREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNP 416 (1219)
Q Consensus 339 dD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~--d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 416 (1219)
+-.+|..-.+-+-++..+....++....++.+++...- +.+ -.++..-..+...++++....+. .|
T Consensus 477 ~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~a-sik~S~~n~ql~~Tss~~igs~s~~l~e-----------~P 544 (982)
T KOG2022|consen 477 DPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSA-SIKLSAPNPQLLSTSSDLIGSLSNWLGE-----------HP 544 (982)
T ss_pred CchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcc-ccccccCChhHHHHHHHHHHHHHHHHhc-----------CC
Confidence 34578877888888888888887766666555443321 111 11333333444444544433221 12
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHH
Q 000934 417 RWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRL 496 (1219)
Q Consensus 417 ~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~ 496 (1219)
.+++.-++.+.+.|..+ +.- +.+...+.++++..+..|.+|...++..+...+...+.....+...+..+|-
T Consensus 545 -----~~ln~sl~~L~~~Lh~s--k~s-~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGy 616 (982)
T KOG2022|consen 545 -----MYLNPSLPLLFQGLHNS--KES-EQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGY 616 (982)
T ss_pred -----cccCchHHHHHHHhcCc--hHH-HHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHH
Confidence 13444455555555432 233 5566679999999999999999999999988887655444567777888888
Q ss_pred HhccCCCCCchhhhhhhHHHHHHHhcC--------CchHHH-HHHHHHHHHHHHhccCCcc-----CCCC--------CC
Q 000934 497 VLSSHSPPVFHPYIKALSSPVLAAVGE--------RYYKVT-AEALRVCGELVRVLRPSVE-----GLGF--------DF 554 (1219)
Q Consensus 497 l~~~~~~~~~~~~l~~i~p~l~~~l~d--------~~~~v~-~~al~~l~~l~~~l~~~~~-----~~~~--------~~ 554 (1219)
++....|+....|+.+|+..+...++- +..+.+ ..-+.+++.+...+..+.. ...+ ..
T Consensus 617 vls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~i 696 (982)
T KOG2022|consen 617 VLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPI 696 (982)
T ss_pred HHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCH
Confidence 877666777777988888888876642 111222 2235566777665433210 0000 11
Q ss_pred cccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccc-cchhhhHHHHHHHhhcCCchHHHHHHHHHHHh----
Q 000934 555 KPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNL-GAELPACLPVLVDRMGNEITRLTAVKAFAVIA---- 629 (1219)
Q Consensus 555 ~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l-~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~---- 629 (1219)
.....++++.+-..+..--.+..|-+.+...++.=+...++.+ .|.++.+.+.+.+...+.. ..++.....++
T Consensus 697 l~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~--a~tl~l~~~~l~~~~ 774 (982)
T KOG2022|consen 697 LQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCL--AVTLSLIAACLLAKS 774 (982)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchH--HHHHHHHHHHHHhhh
Confidence 2234455544433333222234555555544443344445545 5678888888877443321 11111111111
Q ss_pred cCCCCC-----chhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcc--hHHH-HHHHHhhhcCCCChhh
Q 000934 630 ASPLHI-----DLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGAS--AYEV-IIVELSTLISDSDLHM 701 (1219)
Q Consensus 630 ~s~~~~-----~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~--~~~~-il~~l~~~l~~~d~~~ 701 (1219)
...... ++...+...+....+.--.++......-+.++..+.+..+.-+... .+.. +++....++..+.+..
T Consensus 775 ~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~ 854 (982)
T KOG2022|consen 775 TVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTT 854 (982)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHH
Confidence 111111 1111122211111111114566777788888888888876533221 2333 4446677888888888
Q ss_pred hHHHHHHHHHHhhc
Q 000934 702 TALALELCCTLMAD 715 (1219)
Q Consensus 702 ~~~al~~l~~l~~~ 715 (1219)
..++.+++..+...
T Consensus 855 i~aa~qF~t~~~~~ 868 (982)
T KOG2022|consen 855 IRAASQFLTALATY 868 (982)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888887764
No 156
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=5.2 Score=49.12 Aligned_cols=172 Identities=10% Similarity=0.172 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhcccC-----ccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHH--
Q 000934 425 SKIVKSINRQLREKS-----IKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLV-- 497 (1219)
Q Consensus 425 p~lv~~l~~~L~~~~-----~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l-- 497 (1219)
.-++..+.+.+.+.. +..- .+|+..+.+.++..++...+.++.++....+. +-+.-+..+-..+...++.+
T Consensus 461 ~~L~~~l~q~~aa~d~~p~s~~~t-Eaci~~~~sva~~~~~t~~~~i~rl~~~~asi-k~S~~n~ql~~Tss~~igs~s~ 538 (982)
T KOG2022|consen 461 DFLIDTLEQALAAGDEDPDSLNRT-EACIFQFQSVAEYLGETESTWIPRLFETSASI-KLSAPNPQLLSTSSDLIGSLSN 538 (982)
T ss_pred HHHHHHHHHhhhccCCCchHHHHH-HHHHHHHHHHHhhcCcchhHHHHHHHHhcccc-ccccCChhHHHHHHHHHHHHHH
Confidence 444555556665443 3233 67888888898888777666766666544332 11110123333344444444
Q ss_pred -hccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCH
Q 000934 498 -LSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQ 576 (1219)
Q Consensus 498 -~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~ 576 (1219)
+..|+ -|++.-+|.+.++++.+ +...++...+..+++.++ ..+.||.++++..+-+.+.......
T Consensus 539 ~l~e~P-----~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~-------~~L~py~d~~~a~~~e~l~~~~~~~ 604 (982)
T KOG2022|consen 539 WLGEHP-----MYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCP-------ESLDPYADQFSAVCYEVLNKSNAKD 604 (982)
T ss_pred HHhcCC-----cccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhh-------hhCchHHHHHHHHHHHHhcccccCc
Confidence 34442 26777888888888744 667778888999998874 3689999999998888886666667
Q ss_pred HHHHHHHHHHHHHHHhhcc-cccchhhhHHHHHHHhh
Q 000934 577 EVKECAISCMGLVISTFGD-NLGAELPACLPVLVDRM 612 (1219)
Q Consensus 577 ~vr~~Ai~alg~l~~~~g~-~l~~~~~~~l~~L~~~L 612 (1219)
..|.+...++|-++..... ....|+..++.-+...+
T Consensus 605 S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~ql 641 (982)
T KOG2022|consen 605 SDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQL 641 (982)
T ss_pred hHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHH
Confidence 8899999999999987752 22235555555555444
No 157
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.10 E-value=1.1 Score=51.77 Aligned_cols=295 Identities=16% Similarity=0.136 Sum_probs=154.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccc-chhhhHHHHHHHhhcC---CchHHHHHHHHHHHhcCCCCCchhH--HHHHHHHH
Q 000934 574 QDQEVKECAISCMGLVISTFGDNLG-AELPACLPVLVDRMGN---EITRLTAVKAFAVIAASPLHIDLTC--VLEHVIAE 647 (1219)
Q Consensus 574 ~d~~vr~~Ai~alg~l~~~~g~~l~-~~~~~~l~~L~~~L~~---e~~r~~a~~al~~i~~s~~~~~~~~--~l~~~l~~ 647 (1219)
.|.-+...|...++.+++....... ...+.++..+...+++ ......+++++..+...+ .+.. |-...++.
T Consensus 113 ~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~---~~R~~f~~~~~v~~ 189 (429)
T cd00256 113 QDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD---EYRFAFVLADGVPT 189 (429)
T ss_pred CchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc---hHHHHHHHccCHHH
Confidence 3678899999999998875433221 2444455666666654 335667788998877432 1111 11234556
Q ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCC-hhhhHHHHHHHHHHhhccc-CCCc--
Q 000934 648 LTAFLRK--ANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSD-LHMTALALELCCTLMADKR-SSPN-- 721 (1219)
Q Consensus 648 L~~~L~~--~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d-~~~~~~al~~l~~l~~~~~-~~p~-- 721 (1219)
|.+.|+. .+.++...++-|+-.+.-.... .....-..+++.+...++.+- --+...++.++..++.... ..|.
T Consensus 190 L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~-~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~ 268 (429)
T cd00256 190 LVKLLSNATLGFQLQYQSIFCIWLLTFNPHA-AEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKT 268 (429)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHhccHHH-HHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhh
Confidence 6666654 2457777788888776433221 000001235555555554432 2356677888888776310 0011
Q ss_pred hhHhHhhhhHHHHHHHhhhcccchhhHHHHHHHH-HHHHhhc--CCChHHHHHHHhccCCCCCCCcchh-hhhhhhhhhH
Q 000934 722 VGLAVRNKVLPQALALIKSSLLQGQALVALQSFF-AALVYSA--NTSFDTLLDSLLSSAKPSPQSGGVA-KQAMYSIAQC 797 (1219)
Q Consensus 722 ~~~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~-~~l~~~~--~~~~~~l~~~Ll~~~~~~~~~~~l~-~~a~~~~a~~ 797 (1219)
........=++.++..+...-.....+..-+..+ +.+.+.. -..|+++..++....-.= .|.+-. +.=..++.|
T Consensus 269 ~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~W-Sp~H~se~FW~EN~~k- 346 (429)
T cd00256 269 AALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHW-SPVHKSEKFWRENADR- 346 (429)
T ss_pred HHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccC-CCCCCCchHHHHHHHH-
Confidence 1111222122333444433322333332222222 2222211 245777766665332110 111100 111111111
Q ss_pred hhhhhhccCccchhhHHHHHHHHhhcCCCCchHHHHHHHHHHHhhhccCCCCC--c--cchHHHHHHhcCCCchhHhHHH
Q 000934 798 VAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSS--H--EHIENVIIESFQSPFEEIKSAA 873 (1219)
Q Consensus 798 i~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~laL~~Lgeig~~~~~~~--~--~~l~~~ll~~l~~~~e~vR~aA 873 (1219)
. .+ .-..++..+...+.+ +.++.....||+=+|++.++.+... . -...+.+.+++++++++||.-|
T Consensus 347 ---f----~~-~~~~llk~L~~iL~~--s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eA 416 (429)
T cd00256 347 ---L----NE-KNYELLKILIHLLET--SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEA 416 (429)
T ss_pred ---H----Hh-cchHHHHHHHHHHhc--CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHH
Confidence 1 01 123566677777643 3344445667777999998874321 1 1267788999999999999999
Q ss_pred HHHHHhhhhcC
Q 000934 874 SYALGNIAVGN 884 (1219)
Q Consensus 874 a~aLG~l~~~~ 884 (1219)
-.|++++...|
T Consensus 417 L~avQklm~~~ 427 (429)
T cd00256 417 LLAVQKLMVHN 427 (429)
T ss_pred HHHHHHHHHhc
Confidence 99999887655
No 158
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.05 E-value=0.085 Score=48.53 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCc-hhhcccHHHHHHHHHH
Q 000934 224 PEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP-RDISSYCDEILHLTLE 302 (1219)
Q Consensus 224 ~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~-~~~~~~l~~ii~~~l~ 302 (1219)
...++.++.+++.+.+.++..+.++.++|+-.+..+++ .+++|+.|++++..|+...+ +++.|++++++..+++
T Consensus 29 ~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~-----~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 29 IPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALE-----IPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC-----ChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 46778899999999997777777788888777766664 45999999999999999876 5788999999998888
Q ss_pred hc
Q 000934 303 YL 304 (1219)
Q Consensus 303 ~l 304 (1219)
++
T Consensus 104 ~~ 105 (107)
T PF08064_consen 104 LW 105 (107)
T ss_pred hc
Confidence 76
No 159
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.03 E-value=0.064 Score=47.52 Aligned_cols=87 Identities=18% Similarity=0.100 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHH
Q 000934 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1219)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~ 83 (1219)
..+...++.++|+.+-+|--|+..|.+.+.+.+ .+......++..++..|.|+++-|==.|+++++.|+...+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~---- 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD---- 76 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----
Confidence 456778888999999999999999999998866 34466789999999999999999999999999999987665
Q ss_pred HHHHHHHHHhcCC
Q 000934 84 EMTDKLCIKLLNG 96 (1219)
Q Consensus 84 ~l~~~L~~~~~~~ 96 (1219)
.+++.|+....+.
T Consensus 77 ~vl~~L~~~y~~~ 89 (92)
T PF10363_consen 77 EVLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHHhCc
Confidence 4566666555443
No 160
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.03 E-value=11 Score=51.87 Aligned_cols=311 Identities=12% Similarity=0.122 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHhcCchh--hHH-HHH-HHHHHHHhhh-cccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHH
Q 000934 345 VRRAAAKCLAALIVSRPEM--LSK-LYE-EACPKLIDRF-KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWL 419 (1219)
Q Consensus 345 VR~~Aa~~l~~li~~~~~~--l~~-~~~-~i~p~Li~~~-~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 419 (1219)
|+--|...|..+...+-+. +.. .++ .++..+..-+ +.....||.-+++|+..++...+ ..
T Consensus 1153 va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---------------~n 1217 (1780)
T PLN03076 1153 IAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---------------NN 1217 (1780)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---------------hh
Confidence 5666666666665543211 111 111 2332222212 34567899999999999987643 24
Q ss_pred HHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhh----hhhhhhhHhHHHhhcCCCCcchhHHHHHHHHH
Q 000934 420 LKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLA----DHIGSLIPGIEKSLNDKSSTSNLKIEALTFTR 495 (1219)
Q Consensus 420 L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~----~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~ 495 (1219)
+..-|..|+..+.....+++.... ..++..+..++..+-+.+. +.+..++..+...-+... +.++...|+.++.
T Consensus 1218 IkSGWktIF~VLs~aa~d~~e~iV-~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~-~~nISL~AI~lL~ 1295 (1780)
T PLN03076 1218 VKSGWKSMFMVFTTAAYDDHKNIV-LLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRF-NKDISLNAIAFLR 1295 (1780)
T ss_pred hhcCcHHHHHHHHHHHhCccHHHH-HHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcC-cccccHHHHHHHH
Confidence 566688888888877777766665 6778888776654322221 344455554444433222 2445566666655
Q ss_pred HH---h-ccC-------------------------C------CCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 000934 496 LV---L-SSH-------------------------S------PPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELV 540 (1219)
Q Consensus 496 ~l---~-~~~-------------------------~------~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~ 540 (1219)
.+ + ++. . .+....+.=.++-.+.....|...+||..|+.++-+++
T Consensus 1296 ~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL 1375 (1780)
T PLN03076 1296 FCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTL 1375 (1780)
T ss_pred HHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 33 1 110 0 00001123334444445556888899999999988887
Q ss_pred HhccCCccCCCCCCcc-c----HHHHHHHHHHHhhhcCCCH-HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcC
Q 000934 541 RVLRPSVEGLGFDFKP-Y----VQPIYNAIMSRLTNQDQDQ-EVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGN 614 (1219)
Q Consensus 541 ~~l~~~~~~~~~~~~~-~----l~~l~~~ll~~l~~~d~d~-~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~ 614 (1219)
...+ ..|.+ + +..++..+++.++.. .+. ...+..=..++. .+ +. ......+
T Consensus 1376 ~~yG-------~~Fs~~~W~~if~~VLFPIFd~l~~~-~~~~~~~~~~~~~~~~--~~-~~---~e~~~Wl--------- 1432 (1780)
T PLN03076 1376 RNHG-------HLFSLPLWERVFESVLFPIFDYVRHA-IDPSGGDEPEGQGVDG--DQ-GE---LDQDAWL--------- 1432 (1780)
T ss_pred HHhh-------ccCCHHHHHHHHHHHHHHHHHHHHHh-hccccccccccccccc--cc-cc---hhhhhHH---------
Confidence 6643 34543 2 222222222222211 000 000000000000 00 00 0000000
Q ss_pred CchHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhc
Q 000934 615 EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLI 694 (1219)
Q Consensus 615 e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l 694 (1219)
.+|-.-|++.+..+...-. ..+.+.++.++..|..++.++|..+-.....||..++...|..++++....++..+..+.
T Consensus 1433 ~eT~~~AL~~lvdLft~fF-d~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf 1511 (1780)
T PLN03076 1433 YETCTLALQLVVDLFVKFY-PTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAA 1511 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 0011122222222221100 123556777777888888899999999999999999999999999888888888776665
Q ss_pred CC
Q 000934 695 SD 696 (1219)
Q Consensus 695 ~~ 696 (1219)
..
T Consensus 1512 ~~ 1513 (1780)
T PLN03076 1512 NA 1513 (1780)
T ss_pred HH
Confidence 43
No 161
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.03 E-value=0.047 Score=54.56 Aligned_cols=96 Identities=16% Similarity=0.093 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH-hhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHH-
Q 000934 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA-VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL- 283 (1219)
Q Consensus 206 ~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~-~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~- 283 (1219)
|+.++|.++++++.... .-+-.|.+.+..+... .+.++.|.++++++.+..++++ .|+++...++.++..++.
T Consensus 36 y~~~Lpif~dGL~Et~~--Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~t---r~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEH--PYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNT---RDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hhhHHHHHHhhhhccCc--cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHh
Confidence 77899999999987664 3555677888888887 7899999999999999999984 689999999999999955
Q ss_pred --hCchhhcccHHHHHHHHHHhccc
Q 000934 284 --RCPRDISSYCDEILHLTLEYLSY 306 (1219)
Q Consensus 284 --~~~~~~~~~l~~ii~~~l~~l~~ 306 (1219)
..++.+.||+.++++.+-.+.+-
T Consensus 111 ~~~vG~aLvPyyrqLLp~ln~f~~k 135 (183)
T PF10274_consen 111 SDMVGEALVPYYRQLLPVLNLFKNK 135 (183)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 45678999999999988766543
No 162
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.98 E-value=0.0089 Score=40.94 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=24.8
Q ss_pred hHHHHHHhcCCCchhHhHHHHHHHHhhhh
Q 000934 854 IENVIIESFQSPFEEIKSAASYALGNIAV 882 (1219)
Q Consensus 854 l~~~ll~~l~~~~e~vR~aAa~aLG~l~~ 882 (1219)
+.+.+++.++|++++||.+|+.|||.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35778999999999999999999998764
No 163
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.92 E-value=0.12 Score=47.26 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCc
Q 000934 209 ATIEVVRNLRSKGA--KPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1219)
Q Consensus 209 l~~~ll~~l~~~~~--~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1219)
++..+-..+.+.+. +...++.++.+++.+.+.+|..+..++|+|+-.+...++ .+|+|+.|++++..|+...+
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~-----~~eL~~~al~~W~~~i~~L~ 86 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE-----IPELRSLALRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHHHhCC
Confidence 44444444444432 234578899999999998887788888888877777664 67899999999999999876
Q ss_pred -hhhcccHHHHHHHHHHhc
Q 000934 287 -RDISSYCDEILHLTLEYL 304 (1219)
Q Consensus 287 -~~~~~~l~~ii~~~l~~l 304 (1219)
+++.|.+++++..+++++
T Consensus 87 ~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 87 EEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 468888899888888776
No 164
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.84 E-value=1.3 Score=52.63 Aligned_cols=246 Identities=18% Similarity=0.206 Sum_probs=136.8
Q ss_pred HhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000934 166 NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD-----DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1219)
Q Consensus 166 ~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~-----~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~ 240 (1219)
.+....+..++..-+. ..+-.|.+.-+..|..++++ ++++.++.+++.+...++. .+|--.+|.+..+...
T Consensus 40 eeflr~vn~il~vkKr--esi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk--~VRfrvlqila~l~d~ 115 (892)
T KOG2025|consen 40 EEFLRVVNYILLVKKR--ESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDK--KVRFRVLQILALLSDE 115 (892)
T ss_pred HHHHHHHHHheeeccC--CCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcch--hHHHHHHHHHHHHhcc
Confidence 3344445544444433 33455666677777766644 3678888888888877653 6888889999888775
Q ss_pred hhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCccc
Q 000934 241 VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDD 320 (1219)
Q Consensus 241 ~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~ 320 (1219)
.+..=...++.+...++.-+- |-.+.+|-.|.-++..+=.. |.+ + -..+.+.+...+++||
T Consensus 116 ~~eidd~vfn~l~e~l~~Rl~---Drep~VRiqAv~aLsrlQ~d-~~d--e-e~~v~n~l~~liqnDp------------ 176 (892)
T KOG2025|consen 116 NAEIDDDVFNKLNEKLLIRLK---DREPNVRIQAVLALSRLQGD-PKD--E-ECPVVNLLKDLIQNDP------------ 176 (892)
T ss_pred ccccCHHHHHHHHHHHHHHHh---ccCchHHHHHHHHHHHHhcC-CCC--C-cccHHHHHHHHHhcCC------------
Confidence 443322344556666665555 45677888887776554311 100 0 0123444444555555
Q ss_pred ccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 000934 321 EAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQ 400 (1219)
Q Consensus 321 ~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~ 400 (1219)
|..|||+|..++..=- ...|.++.|-+|-+..+|.-+++-+..-++.
T Consensus 177 ---------------------S~EVRRaaLsnI~vdn------------sTlp~IveRarDV~~anRrlvY~r~lpkid~ 223 (892)
T KOG2025|consen 177 ---------------------SDEVRRAALSNISVDN------------STLPCIVERARDVSGANRRLVYERCLPKIDL 223 (892)
T ss_pred ---------------------cHHHHHHHHHhhccCc------------ccchhHHHHhhhhhHHHHHHHHHHhhhhhhh
Confidence 3479999886654322 2456677777777766776554432222211
Q ss_pred hcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHH-HHHHHHhcchhhhhhhhhhhHhHHHhhcC
Q 000934 401 TGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSV-LRELVVVLPDCLADHIGSLIPGIEKSLND 479 (1219)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~-L~~L~~~~~~~l~~~~~~l~~~l~~~l~d 479 (1219)
+ .+ .+..-+..+...+++.+..++ .++... +..+.+...+.+ +.++..+.-
T Consensus 224 -r----------------~l--si~krv~LlewgLnDRe~sVk-~A~~d~il~~Wl~~~dgni--------~ElL~~ldv 275 (892)
T KOG2025|consen 224 -R----------------SL--SIDKRVLLLEWGLNDREFSVK-GALVDAILSGWLRFSDGNI--------LELLERLDV 275 (892)
T ss_pred -h----------------hh--hHHHHHHHHHHhhhhhhhHHH-HHHHHHHHHHHhhhccccH--------HHHHHHhcc
Confidence 0 11 123444566677888888888 776644 344655433322 223334443
Q ss_pred CCCcchhHHHHHHHHHH
Q 000934 480 KSSTSNLKIEALTFTRL 496 (1219)
Q Consensus 480 ~~~~~~~~~~al~~l~~ 496 (1219)
++ ++.++..++..+-.
T Consensus 276 sn-ss~vavk~lealf~ 291 (892)
T KOG2025|consen 276 SN-SSEVAVKALEALFS 291 (892)
T ss_pred cc-chHHHHHHHHHHHH
Confidence 33 24566666554433
No 165
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.77 E-value=0.098 Score=48.13 Aligned_cols=98 Identities=15% Similarity=0.277 Sum_probs=74.0
Q ss_pred hhhhHhHHHHHHHHhhhhcC----ChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000934 162 NLMSNDHERLLSALLPQLSA----NQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGAL 237 (1219)
Q Consensus 162 ~~l~~~~~~l~~~ll~~l~~----~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l 237 (1219)
..+.++.=.++..+-..+.| ....-|++++.+++.+.. .....+....|.++..|+..-..++.+..+++++..+
T Consensus 3 ~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~f 81 (107)
T PF08064_consen 3 DFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIPELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 34445555566666666665 234789999999999999 6666677778888877776543347899999999999
Q ss_pred HHHhh-hhhccchhhhHHHHHHhh
Q 000934 238 SRAVG-YRFGPHLGDTVPVLIDYC 260 (1219)
Q Consensus 238 ~~~~~-~~~~~~l~~iip~ll~~~ 260 (1219)
.+..+ ..++|++++++-.++...
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHhc
Confidence 99886 578888888888877765
No 166
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.51 E-value=0.92 Score=50.21 Aligned_cols=188 Identities=14% Similarity=0.153 Sum_probs=122.6
Q ss_pred hhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCC
Q 000934 467 GSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPS 546 (1219)
Q Consensus 467 ~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~ 546 (1219)
..+...+.++|+- .-++.++..|+..+..+++..+++.+...+.-..|.+...+....-.|+..-+..++...-.+
T Consensus 53 ~~v~krLaqCL~P-~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL--- 128 (307)
T PF04118_consen 53 LQVSKRLAQCLNP-ALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPL--- 128 (307)
T ss_pred HHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCc---
Confidence 3445555666653 335689999999999999999988887766666666666665555577777888887776544
Q ss_pred ccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCCchHHHHHHHHH
Q 000934 547 VEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFA 626 (1219)
Q Consensus 547 ~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~ 626 (1219)
+..+.|.+..++-.++..+. |...|+.++.+..+..+-...|+. -+++.++-.+ +++...|..|+.-+.
T Consensus 129 ----~~~L~p~l~~li~slLpGLe--de~sE~~~~~~~ll~~l~~~v~~~--~F~~~lwl~i---i~sp~~Rl~al~~l~ 197 (307)
T PF04118_consen 129 ----GPALRPCLKGLILSLLPGLE--DEGSEFFDRTLKLLDKLKEAVGDK--YFWQCLWLCI---ITSPSRRLGALNYLL 197 (307)
T ss_pred ----cHHHHHHHHHHHHHhccccc--cCCchHHHHHHHHHHHHHHhcChh--HHHHHHHHHH---hcCcchhHHHHHHHH
Confidence 23577888888888888775 345788899998888887776653 1344444433 356777888877766
Q ss_pred HHhcCCC-------CCc----hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000934 627 VIAASPL-------HID----LTCVLEHVIAELTAFLRKANRALRQATLGTMNS 669 (1219)
Q Consensus 627 ~i~~s~~-------~~~----~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~ 669 (1219)
.-..... ..+ +.+-..-++..+...+.+++--++..++..|-.
T Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 198 RRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred HhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 5331111 000 011122345556666777777777766665543
No 167
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.51 E-value=0.77 Score=51.47 Aligned_cols=132 Identities=17% Similarity=0.275 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHH-HHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH
Q 000934 532 ALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIM-SRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVD 610 (1219)
Q Consensus 532 al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll-~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~ 610 (1219)
.|..++.+++.... ...-...+..+++.++ ..+. ..+..||+.|+.|+|-+.-.-.+ .-.+.++.+..
T Consensus 3 cL~i~~~lL~~~~~-----~~~~~~~l~~ll~~lI~P~v~--~~~~~vR~~al~cLGl~~Lld~~----~a~~~l~l~~~ 71 (298)
T PF12719_consen 3 CLSITQSLLENVSS-----SLSPNISLESLLDSLILPAVQ--SSDPAVRELALKCLGLCCLLDKE----LAKEHLPLFLQ 71 (298)
T ss_pred HHHHHHHHHHhccc-----cCCCcchHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHH
Confidence 34455666665431 1111224446665544 4444 44679999999999976543322 33444555655
Q ss_pred hhc--CCchHHHHHHHHHHHhcCCCCCchh--------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 000934 611 RMG--NEITRLTAVKAFAVIAASPLHIDLT--------CVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAY 674 (1219)
Q Consensus 611 ~L~--~e~~r~~a~~al~~i~~s~~~~~~~--------~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~ 674 (1219)
.++ ++..+..|++++..+...-....+. .....++..+..++...+..++..+.+.+..|+.+.
T Consensus 72 ~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 72 ALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 553 3457889999998887321111121 223567888899999889899999999999998663
No 168
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.43 E-value=2.3 Score=50.16 Aligned_cols=77 Identities=18% Similarity=0.161 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHHhhhcChhhHHHHHHH-HHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhc
Q 000934 61 DVSGLAVKCLAPLVKKVSEPRVVEMTDK-LCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITL 138 (1219)
Q Consensus 61 eVq~~A~k~l~~l~~~~~~~~~~~l~~~-L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~ 138 (1219)
..|-.|.++||.+...+++..+..+... |...+.+...-.|-++++.+............... ...+.+.|...+.+
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~-~~~l~~~L~~~L~~ 179 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPP-PQALSPRLLEILEN 179 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCcc-HHHHHHHHHHHHcC
Confidence 4577999999999999999888888885 77788777777899999999877765543111010 23455566655553
No 169
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.43 E-value=6.9 Score=45.29 Aligned_cols=283 Identities=14% Similarity=0.188 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhccc-------CccchhhHHHHHHHHHHHh
Q 000934 385 NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREK-------SIKTKQVGAFSVLRELVVV 457 (1219)
Q Consensus 385 ~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~-------~~~~r~~~~~~~L~~L~~~ 457 (1219)
.-|.+++.++...++...+. .....+++.++.+++.+.+-+... +.+.. ..|+.+|+.+...
T Consensus 8 ~~r~daY~~l~~~l~~~~~~----------~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~-~qALkll~~~l~~ 76 (372)
T PF12231_consen 8 SSRLDAYMTLNNALKAYDNL----------PDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLV-IQALKLLGFFLYH 76 (372)
T ss_pred HHHHHHHHHHHHHHHHhcCC----------CcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHH-HHHHHHHHHHHcc
Confidence 34667777777776654311 112367888888888888877652 22344 5677788776642
Q ss_pred c--chhhhhhh-hhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCc--hHHHHHH
Q 000934 458 L--PDCLADHI-GSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERY--YKVTAEA 532 (1219)
Q Consensus 458 ~--~~~l~~~~-~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~--~~v~~~a 532 (1219)
. -..+.+.. .-++......+.+++.+-.+...++.+++. ...++..+.......+-.++..+.++. ..+..|+
T Consensus 77 ~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~er 154 (372)
T PF12231_consen 77 PEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISER 154 (372)
T ss_pred HHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence 1 12233322 336777777887766433444444544443 334444555544444555555565533 3688999
Q ss_pred HHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhh
Q 000934 533 LRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRM 612 (1219)
Q Consensus 533 l~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L 612 (1219)
+.++..++...... +......|++.+++.++. ....+|.+|+.+.-.+...++.. ..+...+.
T Consensus 155 L~i~~~ll~q~p~~---M~~~~~~W~~~l~~~l~~------~~k~ir~~a~~l~~~~~~~l~~~--~~~s~~~~------ 217 (372)
T PF12231_consen 155 LNIYKRLLSQFPQQ---MIKHADIWFPILFPDLLS------SAKDIRTKAISLLLEAKKCLGPN--KELSKSVL------ 217 (372)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh------cchHHHHHHHHHHHHHHHHhChh--HHHHHHHH------
Confidence 99999998764221 111223355555554432 34678888776655544444321 11111111
Q ss_pred cCCchHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCC-CC-cchHHHHHHHH
Q 000934 613 GNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDK-IG-ASAYEVIIVEL 690 (1219)
Q Consensus 613 ~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~-l~-~~~~~~il~~l 690 (1219)
.+...... + ..+...+.+.|...+...+. ...+......+..-.+.. +. -..+.+.+...
T Consensus 218 --------------~~~~~~~~-~-~~~~~~~~~~L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~ 279 (372)
T PF12231_consen 218 --------------EDLQRSLE-N-GKLIQLYCERLKEMIKSKDE--YKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVP 279 (372)
T ss_pred --------------HHhccccc-c-ccHHHHHHHHHHHHHhCcCC--cchHHHHHHHHHHHhCCchhhccHhHhHHHHHH
Confidence 11111100 0 12333344444444443222 123333333333322322 22 13456666666
Q ss_pred hhhcCCCChhhhHHHHHHHHHHhhc
Q 000934 691 STLISDSDLHMTALALELCCTLMAD 715 (1219)
Q Consensus 691 ~~~l~~~d~~~~~~al~~l~~l~~~ 715 (1219)
..-++.+|+.++..|+.++..++-.
T Consensus 280 e~cFn~~d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 280 EKCFNSSDPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 6677889999999999999998763
No 170
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=2.6 Score=49.97 Aligned_cols=181 Identities=14% Similarity=0.149 Sum_probs=108.8
Q ss_pred hcCCCcchhhhhHHHHHHHhc--cccCCC--ChHHHHHHHHHHHHhccCccchhhHHHHHHHH----HHhhhcChhhHHH
Q 000934 13 ITGKDKDFRYMATSDLLNELN--KESFKA--DADLEVKLSNIVVQQLDDVAGDVSGLAVKCLA----PLVKKVSEPRVVE 84 (1219)
Q Consensus 13 ~~~~d~d~R~mAl~dL~~~l~--~~~~~~--~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~----~l~~~~~~~~~~~ 84 (1219)
++-+...+|--|+.-+.+..- ++..+- -+....+=...+.++|+|+-++||+.|++-+. .++.-+|+..+.+
T Consensus 183 L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ 262 (1005)
T KOG1949|consen 183 LKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILID 262 (1005)
T ss_pred hccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 456667777777666555432 222211 11334455566889999999999999885554 4555677777777
Q ss_pred HHHHHHHHhcC-CCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhh
Q 000934 85 MTDKLCIKLLN-GKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1219)
Q Consensus 85 l~~~L~~~~~~-~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~ 163 (1219)
++.+++..+.. ...++|-....+|-.+..+ +.....++.++|.+-..|.+. ...||..++|+|.-+-..-...
T Consensus 263 ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n----p~sh~~le~~Lpal~~~l~D~--se~VRvA~vd~ll~ik~vra~~ 336 (1005)
T KOG1949|consen 263 LLKKITDELAFDTSSDVRCSVFKGLPMILDN----PLSHPLLEQLLPALRYSLHDN--SEKVRVAFVDMLLKIKAVRAAK 336 (1005)
T ss_pred HHHHHHHHhhhccchheehhHhcCcHHHHcC----ccchhHHHHHHHhcchhhhcc--chhHHHHHHHHHHHHHhhhhhh
Confidence 77777776653 3445665444444443322 345667889999998888886 4789999999987664321111
Q ss_pred hhHhHHHHHHHHhhhhcCChHHH-HHHHHHHHHHHHhhC
Q 000934 164 MSNDHERLLSALLPQLSANQASV-RKKSVSCIASLASSL 201 (1219)
Q Consensus 164 l~~~~~~l~~~ll~~l~~~~~~v-rk~a~~~l~~l~~~~ 201 (1219)
+ +----++.++..|..++..| |+-+.-.+..+.+..
T Consensus 337 f--~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~ 373 (1005)
T KOG1949|consen 337 F--WKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVN 373 (1005)
T ss_pred h--hccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCC
Confidence 1 11112444555565555444 444444444444443
No 171
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.13 E-value=0.58 Score=51.82 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=115.9
Q ss_pred HHHHHHHHHHh-hcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhh----h--HhHHHHHHHH
Q 000934 103 IASIALKTIIA-EVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM----S--NDHERLLSAL 175 (1219)
Q Consensus 103 ~a~~aL~~~i~-~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l----~--~~~~~l~~~l 175 (1219)
.++..+.-++. .... ......+.-++|.++..+.+. +++++..++.+|..++.+.+... . ...+.+.+.+
T Consensus 95 ~~~~~l~w~v~~~~~~-~~i~~~~~liiP~iL~llDD~--~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al 171 (282)
T PF10521_consen 95 LASHVLSWIVLSQLDR-PWISQHWPLIIPPILNLLDDY--SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDAL 171 (282)
T ss_pred ccHHHHHHHHHhcCCc-chHHHhhhHHHhhHHHHhcCC--CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHH
Confidence 34466776666 5444 345667899999999988876 58999999999999999876543 2 2356666677
Q ss_pred hhhhc--------CChHHHHHHHHHHHHHHHhhCC-------HHHHHHHHHH-HHHHhhcCCC--ChHHHHHHHHHHHHH
Q 000934 176 LPQLS--------ANQASVRKKSVSCIASLASSLS-------DDLLAKATIE-VVRNLRSKGA--KPEMIRTNIQMVGAL 237 (1219)
Q Consensus 176 l~~l~--------~~~~~vrk~a~~~l~~l~~~~~-------~~~~~~l~~~-ll~~l~~~~~--~~~~~~~~i~~l~~l 237 (1219)
.+++. +++..+=..|..|+-.++.... ...+.+++.. +++.+..... ....+...++.+..+
T Consensus 172 ~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~ 251 (282)
T PF10521_consen 172 FPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPI 251 (282)
T ss_pred HHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHH
Confidence 77765 4455788888899888866421 1134455544 7777765543 357888999999999
Q ss_pred HHHhhhhhccchhhhHHHHHHhhhc
Q 000934 238 SRAVGYRFGPHLGDTVPVLIDYCTS 262 (1219)
Q Consensus 238 ~~~~~~~~~~~l~~iip~ll~~~~~ 262 (1219)
.+..|.....|+..++|.+.+.+++
T Consensus 252 i~~lGi~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 252 IDELGISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998874
No 172
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.98 E-value=3.8 Score=49.36 Aligned_cols=272 Identities=15% Similarity=0.145 Sum_probs=158.3
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCCh-HHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhH
Q 000934 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADA-DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRV 82 (1219)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~-~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~ 82 (1219)
..+..-|.|+.+.|..+|. ++..+... +.|. |. -..-+.++.+. -.++.=+..=.|.|..+++.++...|
T Consensus 239 ~el~~~l~k~l~~~~~~rp-~~~~l~~~---~ff~-D~~~~aLrfLD~l~----~kdn~qKs~Flk~Ls~~ip~fp~rv~ 309 (700)
T KOG2137|consen 239 SELRESLKKLLNGDSAVRP-TLDLLLSI---PFFS-DPGLKALRFLDDLP----QKDNSQKSSFLKGLSKLIPTFPARVL 309 (700)
T ss_pred HHHHHHHHHHhcCCcccCc-chhhhhcc---cccC-Cchhhhhhhccccc----ccCcHHHHHHHHHHHHhhccCCHHHH
Confidence 3455667788899999999 54433221 2222 11 11111222222 13455555566778888888887654
Q ss_pred -HHHHHHHHHHhcCCCcchhhHHHHHHH--HHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHH
Q 000934 83 -VEMTDKLCIKLLNGKDQHRDIASIALK--TIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHK 159 (1219)
Q Consensus 83 -~~l~~~L~~~~~~~~~~~r~~a~~aL~--~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~ 159 (1219)
..+++.|+..+.+..-. ...|- -.|++. .-...+..++.|.|...+.... ...+..-.++=+.-+.++
T Consensus 310 ~~kiLP~L~~el~n~~~v-----p~~LP~v~~i~~~---~s~~~~~~~~~p~l~pi~~~~~-~~~~~l~i~e~mdlL~~K 380 (700)
T KOG2137|consen 310 FQKILPTLVAELVNTKMV-----PIVLPLVLLIAEG---LSQNEFGPKMLPALKPIYSASD-PKQALLFILENMDLLKEK 380 (700)
T ss_pred HHhhhhHHHHHhcccccc-----ccccchhhhhhhc---cchhhhhhhhhHHHHHHhccCC-cccchhhHHhhHHHHHhh
Confidence 68888888877543211 11111 112211 1123356677788777666422 233444444434344444
Q ss_pred hhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000934 160 FGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL-LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALS 238 (1219)
Q Consensus 160 ~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~-~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~ 238 (1219)
.... ...+.+++.+...+++.+..++.++++.+..++.+++-.. -+.++|.+.....+.. +..++-.++-|++.++
T Consensus 381 t~~e--~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt-~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 381 TPPE--EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTT-NLYVKVNVLPCLAGLI 457 (700)
T ss_pred CChH--HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhccc-chHHHHHHHHHHHHHH
Confidence 4331 3467889999999999999999999999999999997664 3567777765543333 2457778889999888
Q ss_pred HHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHH
Q 000934 239 RAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLE 302 (1219)
Q Consensus 239 ~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~ 302 (1219)
..+.. ..-++.+.|+ ++..+ -.|+++.-.+++..+.++...+....-....++|.+..
T Consensus 458 q~lD~--~~v~d~~lpi-~~~~~---~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ 515 (700)
T KOG2137|consen 458 QRLDK--AAVLDELLPI-LKCIK---TRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIP 515 (700)
T ss_pred HHHHH--HHhHHHHHHH-HHHhc---CCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhh
Confidence 65532 1123444444 44444 36788888888888888776664211123344444433
No 173
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=94.96 E-value=7.2 Score=47.15 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=69.3
Q ss_pred HHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCCh--HHHHHHHHHHHHHHHh
Q 000934 122 QSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQ--ASVRKKSVSCIASLAS 199 (1219)
Q Consensus 122 ~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~--~~vrk~a~~~l~~l~~ 199 (1219)
+++++..+|.++-.+.++ +..||...++++..+.++.... +...--+..++.+..+++ +.||.-++.-+..=..
T Consensus 18 e~~L~~~L~plLlkl~S~--~~~VR~kV~eil~hin~Rik~~--~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 18 EQVLDKYLPPLLLKLASP--HASVRKKVIEILSHINKRIKSN--PSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHhccC--CcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 456777777777777765 6899999999999988887652 223334566677777766 5788888877776666
Q ss_pred hCCHHHHHHHHHHHHHHhhc
Q 000934 200 SLSDDLLAKATIEVVRNLRS 219 (1219)
Q Consensus 200 ~~~~~~~~~l~~~ll~~l~~ 219 (1219)
-++.+.-..++|.+++++..
T Consensus 94 Rl~~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 94 RLDDEERRELLPSLLKGISK 113 (501)
T ss_pred cCCHHHHHHHHHHHHHhhcc
Confidence 67777777899999999864
No 174
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=94.70 E-value=0.31 Score=44.55 Aligned_cols=98 Identities=14% Similarity=0.255 Sum_probs=71.1
Q ss_pred hhhhHhHHHHHHHHhhhhcCCh---H-HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000934 162 NLMSNDHERLLSALLPQLSANQ---A-SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGAL 237 (1219)
Q Consensus 162 ~~l~~~~~~l~~~ll~~l~~~~---~-~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l 237 (1219)
..+.++.=.++..+-..+.|.+ + .-||+++.+++.+....+ .......|.+...|+..-..++.+..++.++..+
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~ 81 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALEIPELRSLALRCWHVL 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 3445566666777777777765 3 469999999999999655 5566666666666665544457899999999999
Q ss_pred HHHhh-hhhccchhhhHHHHHHhh
Q 000934 238 SRAVG-YRFGPHLGDTVPVLIDYC 260 (1219)
Q Consensus 238 ~~~~~-~~~~~~l~~iip~ll~~~ 260 (1219)
.+..+ ..++|.++.++-.++.+.
T Consensus 82 i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 82 IKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhc
Confidence 99876 467777777777776654
No 175
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.68 E-value=16 Score=45.41 Aligned_cols=126 Identities=17% Similarity=0.167 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCC---chHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 000934 577 EVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE---ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLR 653 (1219)
Q Consensus 577 ~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e---~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~ 653 (1219)
-||..++-.+|-++-.-++ ...+.+|.|.+.|... ..|.+.+-+++.++.+- ...+..-+|.+..-|+
T Consensus 946 ~vra~~vvTlakmcLah~~----LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDR----LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAASLC 1016 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHHhc
Confidence 4777777778777654433 2456788888877532 24555555666665321 2335566778888899
Q ss_pred HhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHHHHHHHhhc
Q 000934 654 KANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 715 (1219)
Q Consensus 654 ~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~~~ 715 (1219)
+++.-+|..++..|..+++.---.... .-++..+..++ +.+..++..+=.+++.+++.
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~~~vKw~G---~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFGIVKWNG---ELFIRFMLALL-DANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhhhhhhcch---hhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhh
Confidence 999999999999999998653111111 22344445555 34566777777788888775
No 176
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=3.7 Score=48.80 Aligned_cols=151 Identities=19% Similarity=0.229 Sum_probs=109.8
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhh
Q 000934 514 SSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTF 593 (1219)
Q Consensus 514 ~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~ 593 (1219)
=|.+..+++-+++.|+..|...+-++.-..+|+. ...+....++.=+..+.+.|. |.-+.||..|+..+..+...+
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~--~~e~mD~i~~kQf~~l~~LL~--d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDL--HAEEMDSIIQKQFEELYSLLE--DPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCc--cHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHH
Confidence 3566778888999999999988877765444431 012233344444444555554 556889999999888888777
Q ss_pred cccccc-hhhhHHHHHHHhhcCC---chHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000934 594 GDNLGA-ELPACLPVLVDRMGNE---ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNS 669 (1219)
Q Consensus 594 g~~l~~-~~~~~l~~L~~~L~~e---~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~ 669 (1219)
...+.+ .+..++.-+.+.+..+ .+|.+++..+..++..|.. -+.+..++|.|...+.++...+|.+....|..
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s---h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS---HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc---hhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 666655 6677777777766544 4788999999999866544 67788889999999999999999999998887
Q ss_pred HH
Q 000934 670 LV 671 (1219)
Q Consensus 670 l~ 671 (1219)
|=
T Consensus 329 ik 330 (1005)
T KOG1949|consen 329 IK 330 (1005)
T ss_pred HH
Confidence 63
No 177
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=94.58 E-value=1.2 Score=49.18 Aligned_cols=55 Identities=20% Similarity=0.151 Sum_probs=38.8
Q ss_pred CCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhc
Q 000934 37 FKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLL 94 (1219)
Q Consensus 37 ~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~ 94 (1219)
|++=++....-++.=+.+.+|.+..||.+|+|-|..+... +.+..+.+.|.+.+.
T Consensus 52 fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 52 FKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQLLN 106 (460)
T ss_pred HhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHHHHHH
Confidence 3334455566677777888899999999999999877653 555566666655553
No 178
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=8.1 Score=41.72 Aligned_cols=271 Identities=17% Similarity=0.195 Sum_probs=133.0
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhh--cChhh
Q 000934 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKK--VSEPR 81 (1219)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~--~~~~~ 81 (1219)
..+..+++-+.++.|++|..|..-|...... .++.=.......++.+.+++.|+.+ -..|++.++.+..+ +...-
T Consensus 3 s~l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 3 SELVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred hHHHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 3466888889999999999998777555433 2221113345677778888888877 66777888877753 22222
Q ss_pred HHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHH-------hHhHHHHHhhhccCCChhHHHHH-HHHH
Q 000934 82 VVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT-------SLTPQLTKGITLKDMNTEIRCEC-LDIL 153 (1219)
Q Consensus 82 ~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~-------~l~p~L~~~l~~~~~~~~v~~~a-l~~L 153 (1219)
+..++..++..+.++....-+..++.|..+-..-. ....... .-+++++.+..+..-+..+...- -.++
T Consensus 80 l~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~---~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf 156 (353)
T KOG2973|consen 80 LQDLLKVLMDMLTDPQSPLADLICMLLSNLSRDDD---EVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF 156 (353)
T ss_pred HHHHHHHHHHHhcCcccchHHHHHHHHHHhccCch---HHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence 23344444444445544455555555543321111 1000000 12234444333322121122111 1233
Q ss_pred HHHHHH-hhhhhhHhHHH-HHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH-----H---HHHHHHHHHHHhhc----
Q 000934 154 CDVLHK-FGNLMSNDHER-LLSALLPQLSANQASVRKKSVSCIASLASSLSDD-----L---LAKATIEVVRNLRS---- 219 (1219)
Q Consensus 154 ~~l~~~-~g~~l~~~~~~-l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-----~---~~~l~~~ll~~l~~---- 219 (1219)
.++-.. .|..+--+-.. ..+.+++ +.++.+.||+....+. +-.++-+. . -..++|.++.-+-.
T Consensus 157 ~nls~~~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~Gvagt--lkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 157 ANLSQFEAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGT--LKNCCFDAKLHEVLLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHhhhhhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHH--HHhhhccchhHHHHhcchHHHHHHHHhhcCCcccc
Confidence 333221 12222111112 2333333 4446677877654332 22211111 1 12344444433321
Q ss_pred --------------------CCCChHHHHHHHHHHHHHHHHhhhhhccch-hhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 000934 220 --------------------KGAKPEMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQAL 278 (1219)
Q Consensus 220 --------------------~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al~~l 278 (1219)
...++.+|...++++-.++.+.+.| .++ ..=++.+++-+-.. ++|+++|+.|.+..
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GR--e~lR~kgvYpilRElhk~-e~ded~~~ace~vv 310 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGR--EVLRSKGVYPILRELHKW-EEDEDIREACEQVV 310 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhH--HHHHhcCchHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 1123478888888888888765432 122 11123333333222 58899999998888
Q ss_pred HHHHHhCc
Q 000934 279 ESFLLRCP 286 (1219)
Q Consensus 279 ~~l~~~~~ 286 (1219)
+.+++.-|
T Consensus 311 q~Lv~~e~ 318 (353)
T KOG2973|consen 311 QMLVRLEP 318 (353)
T ss_pred HHHHhccc
Confidence 87777655
No 179
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.57 E-value=0.77 Score=50.84 Aligned_cols=152 Identities=14% Similarity=0.227 Sum_probs=105.4
Q ss_pred chhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCC---chh--hhhhhHHHHHHHhc--------CCc
Q 000934 459 PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPV---FHP--YIKALSSPVLAAVG--------ERY 525 (1219)
Q Consensus 459 ~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~---~~~--~l~~i~p~l~~~l~--------d~~ 525 (1219)
...++++++-++|.++..+.|.. ..+|..++.++..++....+.. +.. ..+-+.+++..++. +..
T Consensus 110 ~~~i~~~~~liiP~iL~llDD~~--~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s 187 (282)
T PF10521_consen 110 RPWISQHWPLIIPPILNLLDDYS--PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDES 187 (282)
T ss_pred cchHHHhhhHHHhhHHHHhcCCC--HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhh
Confidence 44578899999999999998864 6899999999999998876666 544 35556666666665 556
Q ss_pred hHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHH-HHHHHHhhhcCC--CHHHHHHHHHHHHHHHHhhcccccchhh
Q 000934 526 YKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIY-NAIMSRLTNQDQ--DQEVKECAISCMGLVISTFGDNLGAELP 602 (1219)
Q Consensus 526 ~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~-~~ll~~l~~~d~--d~~vr~~Ai~alg~l~~~~g~~l~~~~~ 602 (1219)
..+-..|..++-.+++...... .......+.+++ +.+++.+.-... ..+++...+..+..++..+|-....+++
T Consensus 188 ~~Ll~~ay~~L~~L~~~~~~~~---~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~ 264 (282)
T PF10521_consen 188 LELLQAAYPALLSLLKTQENDD---SNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQ 264 (282)
T ss_pred HHHHHHHHHHHHHHHHhhccCC---cccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 6788888888888877642211 222333333333 335555432222 3677888888888888888877767888
Q ss_pred hHHHHHHHhhcCC
Q 000934 603 ACLPVLVDRMGNE 615 (1219)
Q Consensus 603 ~~l~~L~~~L~~e 615 (1219)
++++.+.+-++|.
T Consensus 265 rii~~l~~~l~np 277 (282)
T PF10521_consen 265 RIIPVLSQILENP 277 (282)
T ss_pred HHHHHHHHHhcCC
Confidence 8888887766553
No 180
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.48 E-value=0.15 Score=60.55 Aligned_cols=223 Identities=17% Similarity=0.230 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcC----hhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChh
Q 000934 44 EVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS----EPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSS 119 (1219)
Q Consensus 44 ~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~----~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~ 119 (1219)
..++++.|+..+.=.+ +|...+.++....+ +++...+++.|++.+...+.+.|-.=..-+...+..++.
T Consensus 291 ~~kvlp~Ll~~~~~g~-----a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~-- 363 (690)
T KOG1243|consen 291 ASKVLPILLAALEFGD-----AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK-- 363 (690)
T ss_pred HHHHHHHHHHHhhccc-----cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH--
Confidence 4556677776665222 33334444443211 234456888888887655544443322333333433332
Q ss_pred hhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Q 000934 120 LAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLAS 199 (1219)
Q Consensus 120 ~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~ 199 (1219)
+.+-+.|.|.+..|+.+. ++.+|+..+..+..++...++. .-...+++.+-..-.|++..+|-....|+|.++.
T Consensus 364 --~~~~d~I~phv~~G~~DT--n~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 364 --QILNDQIFPHVALGFLDT--NATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAP 437 (690)
T ss_pred --HhhcchhHHHHHhhcccC--CHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeeccccc
Confidence 224467889999999986 5889999999999999888875 1234566666555557778899999999999998
Q ss_pred hCCHHHHHHH-HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHH
Q 000934 200 SLSDDLLAKA-TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQAL 278 (1219)
Q Consensus 200 ~~~~~~~~~l-~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l 278 (1219)
++....-+.+ .......++++-. ..|...+..+.+.....+. ..--.+|.|.+.-..- +++..+|+.+..++
T Consensus 438 ~l~~~~R~~vL~~aftralkdpf~--paR~a~v~~l~at~~~~~~--~~va~kIlp~l~pl~v---d~e~~vr~~a~~~i 510 (690)
T KOG1243|consen 438 HLAASVRKRVLASAFTRALKDPFV--PARKAGVLALAATQEYFDQ--SEVANKILPSLVPLTV---DPEKTVRDTAEKAI 510 (690)
T ss_pred ccchhhhccccchhhhhhhcCCCC--CchhhhhHHHhhcccccch--hhhhhhcccccccccc---CcccchhhHHHHHH
Confidence 8755543332 2333445666653 3566666555554443221 1111223333322111 46778999999888
Q ss_pred HHHHHhCc
Q 000934 279 ESFLLRCP 286 (1219)
Q Consensus 279 ~~l~~~~~ 286 (1219)
..+.....
T Consensus 511 ~~fl~kl~ 518 (690)
T KOG1243|consen 511 RQFLEKLE 518 (690)
T ss_pred HHHHhhhh
Confidence 87766554
No 181
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.48 E-value=0.86 Score=52.72 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=44.8
Q ss_pred cccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhccc--chhHHHHHHHHHHHHH
Q 000934 340 DASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKER--EENVKMDVFNTFIELV 398 (1219)
Q Consensus 340 D~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~--~~~Vr~~~~~~l~~l~ 398 (1219)
|..|-+|.-|++++..++..+++....+...+.-.+.+.|.|. .+.....++.++.++.
T Consensus 309 dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 309 DNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 4469999999999999999999877777777777777777554 4556666666665554
No 182
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=0.94 Score=48.65 Aligned_cols=125 Identities=18% Similarity=0.257 Sum_probs=89.6
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHH---HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhh
Q 000934 169 ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL---LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRF 245 (1219)
Q Consensus 169 ~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~---~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 245 (1219)
+..+...+..|.+.+|...--++..+..++.+-+..+ +..++-.+++.++++. +.+-++++.+++.|.......+
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlR--S~VsraA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLR--SAVSRAACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666778889999888888888888877665543 5556666666676654 5788999999999999888777
Q ss_pred ccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHH
Q 000934 246 GPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLT 300 (1219)
Q Consensus 246 ~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~ 300 (1219)
..-++.++-.++.-.. ++.--+||.|..+|..++.... ....++.+++.+
T Consensus 165 ~~~ld~lv~~Ll~ka~---~dnrFvreda~kAL~aMV~~vt--p~~~L~~L~~~~ 214 (334)
T KOG2933|consen 165 DQELDDLVTQLLHKAS---QDNRFVREDAEKALVAMVNHVT--PQKLLRKLIPIL 214 (334)
T ss_pred HHHHHHHHHHHHhhhc---ccchHHHHHHHHHHHHHHhccC--hHHHHHHHHHHH
Confidence 7777776666655433 4556699999999999987653 233455555553
No 183
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=94.32 E-value=19 Score=44.79 Aligned_cols=99 Identities=9% Similarity=0.060 Sum_probs=69.9
Q ss_pred CCcchhhhhHHHHHHHhccccC-------CCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHH
Q 000934 16 KDKDFRYMATSDLLNELNKESF-------KADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDK 88 (1219)
Q Consensus 16 ~d~d~R~mAl~dL~~~l~~~~~-------~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~ 88 (1219)
.|=..|-.|+--+++.+.+.|. ..++.. -|...++.++-..++-.+-+-..|++.+++.--+..|+++++.
T Consensus 50 ~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v--~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~D 127 (947)
T COG5657 50 NSMSLRWAALIQFKNYIDKHWREENGNSILPDENV--LIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPD 127 (947)
T ss_pred cchhHHHHHHHHHHhhHHHHhhhhcccCCCCccch--HHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHH
Confidence 3456788888888888877542 233322 5567777777777777777777899999998888999999999
Q ss_pred HHHHhcCCCcchhhHHHHHHHHHHhhcC
Q 000934 89 LCIKLLNGKDQHRDIASIALKTIIAEVT 116 (1219)
Q Consensus 89 L~~~~~~~~~~~r~~a~~aL~~~i~~~~ 116 (1219)
|+..+.+++.........++..++..+.
T Consensus 128 L~~~Ls~~D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 128 LLSLLSEKDMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHHHHh
Confidence 9999976444333444455666665544
No 184
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.31 E-value=19 Score=44.76 Aligned_cols=143 Identities=18% Similarity=0.277 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCCCc------c-hhhhhHHHHHHHhcc-------ccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHH
Q 000934 5 QMAAILEKITGKDK------D-FRYMATSDLLNELNK-------ESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCL 70 (1219)
Q Consensus 5 ~l~~ll~~~~~~d~------d-~R~mAl~dL~~~l~~-------~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l 70 (1219)
.+.+++..|...+. | +|+++++|. ++++ ...+..++..-..++.+.+-|.|||+++|..|.+.+
T Consensus 39 AmK~iIa~M~~G~dmssLf~dViK~~~trd~--ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~l 116 (757)
T COG5096 39 AMKKIIAQMSLGEDMSSLFPDVIKNVATRDV--ELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTL 116 (757)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 35566666655432 2 255555443 2221 123456677778899999999999999999999999
Q ss_pred HHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhH-hHHHHHhhhccCCChhHHHHH
Q 000934 71 APLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSL-TPQLTKGITLKDMNTEIRCEC 149 (1219)
Q Consensus 71 ~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l-~p~L~~~l~~~~~~~~v~~~a 149 (1219)
+.+=. .+.+..+++.+-+.+.++...+|.-|++|+..+..- ....++.. .--++..+-.+. ++.|...|
T Consensus 117 s~l~~---~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l------d~~l~~~~g~~~~l~~l~~D~-dP~Vi~nA 186 (757)
T COG5096 117 SLLRV---KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL------DKDLYHELGLIDILKELVADS-DPIVIANA 186 (757)
T ss_pred HhcCh---HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc------CHhhhhcccHHHHHHHHhhCC-CchHHHHH
Confidence 86532 245677788888888888999999999999988731 12222222 112223333222 68888888
Q ss_pred HHHHHHHHHH
Q 000934 150 LDILCDVLHK 159 (1219)
Q Consensus 150 l~~L~~l~~~ 159 (1219)
+-.|.++-..
T Consensus 187 l~sl~~i~~e 196 (757)
T COG5096 187 LASLAEIDPE 196 (757)
T ss_pred HHHHHHhchh
Confidence 8877766544
No 185
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.27 E-value=7.7 Score=48.19 Aligned_cols=115 Identities=21% Similarity=0.243 Sum_probs=71.4
Q ss_pred HHHHHHHhhhhcCC----hHHHHHHHHHHHHHHHh-hCC------HHHHHHHHHHHHHHhhcC--CCChHHHHHHHHHHH
Q 000934 169 ERLLSALLPQLSAN----QASVRKKSVSCIASLAS-SLS------DDLLAKATIEVVRNLRSK--GAKPEMIRTNIQMVG 235 (1219)
Q Consensus 169 ~~l~~~ll~~l~~~----~~~vrk~a~~~l~~l~~-~~~------~~~~~~l~~~ll~~l~~~--~~~~~~~~~~i~~l~ 235 (1219)
+.+++.++..+.++ ++.+|..|+.+++.++. ++. +.....+++.+.+.+.+. ..+.+.+..++.++|
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 45666666666654 44799999999999986 232 223456666666655432 112345667888888
Q ss_pred HHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccH
Q 000934 236 ALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC 293 (1219)
Q Consensus 236 ~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l 293 (1219)
.+..- ..++.+..++..+......+|-.|++||..++..+|..+++.+
T Consensus 472 N~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l 519 (574)
T smart00638 472 NAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVL 519 (574)
T ss_pred ccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 77542 2222333223211135678999999999999999996655433
No 186
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=1.5 Score=50.50 Aligned_cols=107 Identities=18% Similarity=0.235 Sum_probs=76.0
Q ss_pred ccCCccchHhHHHHHHhhhhccCcccchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHh-hccCC
Q 000934 940 CESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLM-LIKDQ 1018 (1219)
Q Consensus 940 ~~~~~e~~r~~~ae~LG~l~~~~p~~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~-~l~D~ 1018 (1219)
.+|.++++|+++.-+||-+|+-++..+...++-+..+-++.+|+.+..++.-.+...+.. . -.++|. .+.|+
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~------~-a~diL~~L~~D~ 633 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDDRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK------V-ATDILEALMYDT 633 (926)
T ss_pred cccCchHHHHHHHHheeeeEecCcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH------H-HHHHHHHHhhCc
Confidence 456678899999999999999888766555554555778999988888888777766531 2 223444 45688
Q ss_pred ChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHH
Q 000934 1019 DRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLY 1053 (1219)
Q Consensus 1019 ~~~vR~~a~~~L~~~~~~~p~~i~~~l~~llp~l~ 1053 (1219)
+.-||+.|+.+++.+.-.+-.-+.|.+..+...+.
T Consensus 634 ~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~ 668 (926)
T COG5116 634 NDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFN 668 (926)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHH
Confidence 89999999999998654444444555555544443
No 187
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=93.94 E-value=0.69 Score=46.14 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=50.9
Q ss_pred hhhhh-hhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 000934 463 ADHIG-SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVR 541 (1219)
Q Consensus 463 ~~~~~-~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~ 541 (1219)
+++.+ -.+..+.+.|+|++- +..+..++..+..++++.+... .||+++++|.++..+.......+..-+.-++.++.
T Consensus 80 ee~y~~vvi~~L~~iL~D~sL-s~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 80 EEYYPTVVINALMRILRDPSL-SSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44333 356777788888753 3344566777777777665555 79999999999999976555555554545555443
No 188
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=1.4 Score=47.39 Aligned_cols=164 Identities=16% Similarity=0.222 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHH
Q 000934 343 WKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQ 422 (1219)
Q Consensus 343 wkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 422 (1219)
|.+.--+...+..++..+++.+.+.+..++..+++.++...-.|-..++.+++.++..... .+.+
T Consensus 102 W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~---------------~i~~ 166 (334)
T KOG2933|consen 102 WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN---------------SIDQ 166 (334)
T ss_pred HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---------------HHHH
Confidence 7777778888999999999999999999999998888777777888888899999876531 2333
Q ss_pred HHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHH-HHHHHHHHhccC
Q 000934 423 EVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIE-ALTFTRLVLSSH 501 (1219)
Q Consensus 423 ~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~-al~~l~~l~~~~ 501 (1219)
.+..++..+..--...+.=+| ..+-..|..++.+..+ ..+++.+..++++.+ ++++.. ++.+.+.+..-.
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvr-eda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n--~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVR-EDAEKALVAMVNHVTP------QKLLRKLIPILQHSN--PRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHHHhhhcccchHHH-HHHHHHHHHHHhccCh------HHHHHHHHHHHhhhc--hhhhhhhhccccccceecc
Confidence 444444333322111222256 7777888888876422 124455555566554 344433 333333333221
Q ss_pred CCCCchhhhhhhHHHHHHHhcCCchHHHH
Q 000934 502 SPPVFHPYIKALSSPVLAAVGERYYKVTA 530 (1219)
Q Consensus 502 ~~~~~~~~l~~i~p~l~~~l~d~~~~v~~ 530 (1219)
-++...+++..+++.+..-..|+.+..+.
T Consensus 238 v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~ 266 (334)
T KOG2933|consen 238 VLPVLLQGSCDLSRAAQEQGSDKLPELRE 266 (334)
T ss_pred ccchhhHhHHHHHHHHHhhhccccccccc
Confidence 22344456777777777777777665443
No 189
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=93.82 E-value=19 Score=43.12 Aligned_cols=430 Identities=13% Similarity=0.166 Sum_probs=219.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCC
Q 000934 143 TEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKG 221 (1219)
Q Consensus 143 ~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~ 221 (1219)
-..|..++.-|.+.+..+.- ...+.+-...-..+..+.+ ..|+.+...+..++..-... ....-..+...+.++.
T Consensus 4 l~~R~~a~~~l~~~i~~~~~---~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~-~~~~R~~fF~~I~~~~ 79 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPL---SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSS-SGLMRAEFFRDISDPS 79 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccc-cHHHHHHHHHHHhcCC
Confidence 34566777777777776644 3445555555555555544 79999999998888764331 1111122233334443
Q ss_pred CChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHH---HHHHHHHHHHHHHhCchh------hccc
Q 000934 222 AKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEEL---REYSLQALESFLLRCPRD------ISSY 292 (1219)
Q Consensus 222 ~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~el---re~al~~l~~l~~~~~~~------~~~~ 292 (1219)
. ++....-++++.++.+ .|..+..+-.++.|++...+... ...+ |..+-.. ...-+.. -...
T Consensus 80 ~-~~d~~~~l~aL~~LT~-~Grdi~~~~~~i~~~L~~wl~~~---~~~~~~~r~~~~~~----~~~~~~~~~~~~~~~~~ 150 (464)
T PF11864_consen 80 N-DDDFDLRLEALIALTD-NGRDIDFFEYEIGPFLLSWLEPS---YQAARSARRKAKKS----SSSKSKGLSNLDNEESN 150 (464)
T ss_pred C-chhHHHHHHHHHHHHc-CCcCchhcccchHHHHHHHHHHH---HHHHHHHHHHhhcc----ccccccccccccchhhh
Confidence 3 2344566777877776 45566666777888887776520 1001 1111000 0000000 1124
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 000934 293 CDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEAC 372 (1219)
Q Consensus 293 l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~ 372 (1219)
+.+++..+...++|..++-+++ +..+ +...++
T Consensus 151 l~~ll~~l~nviKfn~~~l~e~-------------------------~i~~-----------------------lv~~i~ 182 (464)
T PF11864_consen 151 LSDLLQFLVNVIKFNFNYLDED-------------------------EISS-----------------------LVDQIC 182 (464)
T ss_pred HHHHHHHHHHHHhcCCCCCCHH-------------------------HHHH-----------------------HHHHHH
Confidence 5566666667777654432110 0111 111111
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHH
Q 000934 373 PKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLR 452 (1219)
Q Consensus 373 p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~ 452 (1219)
.. +.+-..+..-..++..+.+++.... -| .+.++.++..+....+.. +.. ..++.++.
T Consensus 183 ~i---C~~Ts~~~di~~~L~vldaii~y~~------------iP----~~sl~~~i~vLCsi~~~~--~l~-~~~w~~m~ 240 (464)
T PF11864_consen 183 TI---CKSTSSEDDIEACLSVLDAIITYGD------------IP----SESLSPCIEVLCSIVNSV--SLC-KPSWRTMR 240 (464)
T ss_pred HH---HhccCcHHHHHHHHHHHHHHHHcCc------------CC----hHHHHHHHHHHhhHhccc--ccc-hhHHHHHH
Confidence 11 1122222333566777788876432 13 234566666666664443 344 67888899
Q ss_pred HHHHhcchhhhhhhhhhhHhHHHhh--cCCCC--cchhHHHHHHHHHHHhccCCCCCchh-hhhh--hHHHHHHHhcCCc
Q 000934 453 ELVVVLPDCLADHIGSLIPGIEKSL--NDKSS--TSNLKIEALTFTRLVLSSHSPPVFHP-YIKA--LSSPVLAAVGERY 525 (1219)
Q Consensus 453 ~L~~~~~~~l~~~~~~l~~~l~~~l--~d~~~--~~~~~~~al~~l~~l~~~~~~~~~~~-~l~~--i~p~l~~~l~d~~ 525 (1219)
.|+..+-| ...+..+...| .+... +.++-..|+.+++.++-+.+...+.. .+.. ++|.+..+++...
T Consensus 241 nL~~S~~g------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~ 314 (464)
T PF11864_consen 241 NLLKSHLG------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNS 314 (464)
T ss_pred HHHcCccH------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCC
Confidence 88865322 33445555556 22221 12344578899999887764444433 2344 9999999998777
Q ss_pred hHHHHHHHHHHHHHH-HhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCC-------HHHHHHHHHHHHHHHHhhc--c
Q 000934 526 YKVTAEALRVCGELV-RVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQD-------QEVKECAISCMGLVISTFG--D 595 (1219)
Q Consensus 526 ~~v~~~al~~l~~l~-~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d-------~~vr~~Ai~alg~l~~~~g--~ 595 (1219)
..+..+.+..+..++ +..+..- ...++...+ .++..+...+...+.. ..++ ..+..+...+..+- .
T Consensus 315 ~~v~~eIl~~i~~ll~~~~~~~l--~~~~W~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ie~L~~~~ 390 (464)
T PF11864_consen 315 PRVDYEILLLINRLLDGKYGREL--SEEDWDIIL-DIIEEIFDKIQPFDSWYSNSSSLDQLS-SNLHSLLSSIESLYEQH 390 (464)
T ss_pred CeehHHHHHHHHHHHhHhhhhhh--cccCchHHH-HHHHHHHhhccccccccccccchHHHH-HHHHHHHHHHHHHHhCC
Confidence 788888888888888 4443321 022344333 3333334433321111 1122 11222222222221 1
Q ss_pred cccchhhhHHHHHHHhhcCCchHHHHHHHHHHHh--cCCCCCchhHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Q 000934 596 NLGAELPACLPVLVDRMGNEITRLTAVKAFAVIA--ASPLHIDLTCVLEHVIAELTAFL-RKANRALRQATLGTMNS 669 (1219)
Q Consensus 596 ~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~--~s~~~~~~~~~l~~~l~~L~~~L-~~~~~~lr~~al~~L~~ 669 (1219)
.+.....+++..+.+....-. -..+...+..-. -+|.. +.|+..+...+..|. +..+..+|..++..+..
T Consensus 391 ~~~g~~~~~~~f~~~~~~~lp-~s~~~~vl~~~~~~~~Ps~---~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~e 463 (464)
T PF11864_consen 391 DFNGPKDKLFNFFERVHSYLP-DSSALLVLFYEERSCSPSN---PDWLDNLQKLLDRFYNRDRRSEVRIKALDVLEE 463 (464)
T ss_pred CcCccHHHHHHHHHHHhccCC-HHHHHHHHHHHhcccCCCC---hHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhh
Confidence 222234566666665433211 122333331111 12222 678888888888888 44566788888877654
No 190
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=4.2 Score=45.07 Aligned_cols=181 Identities=18% Similarity=0.135 Sum_probs=112.1
Q ss_pred chhhHHHHHHHHHHhhcCChhhhHHHH-HhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHh-HHHHHHHHh
Q 000934 99 QHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSND-HERLLSALL 176 (1219)
Q Consensus 99 ~~r~~a~~aL~~~i~~~~~~~~~~~~~-~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~-~~~l~~~ll 176 (1219)
+.+..+..-|...++.+.. +..++ -..++.++..+++. +..+|..|.++++....+.+..-... ...-++.++
T Consensus 98 e~ke~ald~Le~lve~iDn---Andl~~~ggl~~ll~~l~~~--~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 98 EDKEDALDNLEELVEDIDN---ANDLISLGGLVPLLGYLENS--DAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred HHHHHHHHHHHHHHHhhhh---HHhHhhccCHHHHHHHhcCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 3455666667777776653 11111 12334555566665 68999999999999999887753321 122466666
Q ss_pred hhhcCChH-HHHHHHHHHHHHHHhhCCHHH--HHHH--HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhh
Q 000934 177 PQLSANQA-SVRKKSVSCIASLASSLSDDL--LAKA--TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGD 251 (1219)
Q Consensus 177 ~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~--~~~l--~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~ 251 (1219)
..+.++.+ .+|.+|+.|++++........ |-.+ ...+...+++++.+...++.++.+++.+.......-.-.-..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 77765555 799999999999998876552 2111 334455566654445677888899999888654321211122
Q ss_pred hHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCc
Q 000934 252 TVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1219)
Q Consensus 252 iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1219)
.++..+..+.. ..+.++++.++.+.-.++...+
T Consensus 253 ~f~~~~~~l~~--~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 253 GFQRVLENLIS--SLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhHHHHHHhh--ccchhhhHHHHHHHHHHHHHHh
Confidence 23333333332 3678889988888777665443
No 191
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.77 E-value=3.3 Score=49.89 Aligned_cols=245 Identities=14% Similarity=0.166 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHH
Q 000934 487 KIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIM 566 (1219)
Q Consensus 487 ~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll 566 (1219)
|..=+..|..++.+.++.. ...+++|.++..+.+. +..-..+-.+..+.+ +.....|...+++.+.
T Consensus 290 Ks~Flk~Ls~~ip~fp~rv---~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~---------~~s~~~~~~~~~p~l~ 355 (700)
T KOG2137|consen 290 KSSFLKGLSKLIPTFPARV---LFQKILPTLVAELVNT--KMVPIVLPLVLLIAE---------GLSQNEFGPKMLPALK 355 (700)
T ss_pred HHHHHHHHHHhhccCCHHH---HHHhhhhHHHHHhccc--cccccccchhhhhhh---------ccchhhhhhhhhHHHH
Confidence 4444444555555443222 3567778777777543 111112222223322 2234456666777777
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCCchH--HHHHHHHHHHhcCCCCCchhHHHHHH
Q 000934 567 SRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITR--LTAVKAFAVIAASPLHIDLTCVLEHV 644 (1219)
Q Consensus 567 ~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r--~~a~~al~~i~~s~~~~~~~~~l~~~ 644 (1219)
..+...+.. ++.---+.-+-.+...+.. ......++|+|.+.+++++++ ..+++.+..++.. .|+.-.-+.+
T Consensus 356 pi~~~~~~~-~~~l~i~e~mdlL~~Kt~~--e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~---iD~~~vk~~i 429 (700)
T KOG2137|consen 356 PIYSASDPK-QALLFILENMDLLKEKTPP--EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAES---IDVPFVKQAI 429 (700)
T ss_pred HHhccCCcc-cchhhHHhhHHHHHhhCCh--HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh---ccHHHHHHHH
Confidence 766543321 1221122222223333321 125788999999999887654 5678888887744 2333333456
Q ss_pred HHHHHHH-HHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHHHHHHHhhcccCCCchh
Q 000934 645 IAELTAF-LRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVG 723 (1219)
Q Consensus 645 l~~L~~~-L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~ 723 (1219)
+|.|... +..++-.++.+++.|++.++++.... .+++.+++ +..-++..|+.+.-..+.+...+.-. .+...
T Consensus 430 lP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~---~v~d~~lp-i~~~~~~~dp~iv~~~~~i~~~l~~~---~~~g~ 502 (700)
T KOG2137|consen 430 LPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA---AVLDELLP-ILKCIKTRDPAIVMGFLRIYEALALI---IYSGV 502 (700)
T ss_pred HHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH---HhHHHHHH-HHHHhcCCCcHHHHHHHHHHHHHHhh---cccce
Confidence 6666544 34567789999999999999775431 12233333 23333456776665555555555442 33322
Q ss_pred HhHhhhhHHHHHHHhhhcccchhhHHHHHHHHHHH
Q 000934 724 LAVRNKVLPQALALIKSSLLQGQALVALQSFFAAL 758 (1219)
Q Consensus 724 ~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~~~l 758 (1219)
....+.++|.++.+.-.+.+.+..+.-.+..++.+
T Consensus 503 ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i~~m 537 (700)
T KOG2137|consen 503 EVMAENVLPLLIPLSVAPSLNGEQYNKYMSEIRLM 537 (700)
T ss_pred eeehhhhhhhhhhhhhcccccHHHHHHHHHHHHHH
Confidence 34667889998888766666665554444444443
No 192
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.68 E-value=18 Score=42.45 Aligned_cols=357 Identities=16% Similarity=0.120 Sum_probs=171.4
Q ss_pred hhhhHHHHHHHhccccCCCCh---HHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCC
Q 000934 21 RYMATSDLLNELNKESFKADA---DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGK 97 (1219)
Q Consensus 21 R~mAl~dL~~~l~~~~~~~~~---~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~ 97 (1219)
+||| ..+.+.++.+=..+.+ .+.+.-....++.+.|..+-++-+=.-+++.++-.++ .|..-+..+.....+..
T Consensus 35 ~Faa-qTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~ 111 (559)
T KOG2081|consen 35 LFAA-QTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIRTQLAVAVAALALHMP--EWVNPIFELVRALSNKH 111 (559)
T ss_pred HHHH-HHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCC
Confidence 4554 5666666553222333 4445555566677777766666665556666665555 34433333333332221
Q ss_pred cchhhHHHHHHHHHHhhcCCh----hh------hHHH-------HHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHh
Q 000934 98 DQHRDIASIALKTIIAEVTTS----SL------AQSI-------HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKF 160 (1219)
Q Consensus 98 ~~~r~~a~~aL~~~i~~~~~~----~~------~~~~-------~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~ 160 (1219)
. +..++..+..-+|.. +. ...+ ...++..+...+++.+.+ + =+.+..+++++
T Consensus 112 ~-----~~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~~l~~lLe~~~l~-~-----~~~l~~Vl~~l 180 (559)
T KOG2081|consen 112 P-----AVPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLVFLSDLLERSDLK-S-----SDDLEQVLRCL 180 (559)
T ss_pred c-----cHHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHhhcCCC-h-----hhHHHHHHHHH
Confidence 1 133455555555530 00 0111 223334444455543311 1 22344555555
Q ss_pred hhhhh------Hh---HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH--H--HH-------HHHHHHHHHhhcC
Q 000934 161 GNLMS------ND---HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD--L--LA-------KATIEVVRNLRSK 220 (1219)
Q Consensus 161 g~~l~------~~---~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~--~--~~-------~l~~~ll~~l~~~ 220 (1219)
|.-+. .+ .-.++...+..+++. ..-..|..|+..+.....+. . +. .+++.....-. .
T Consensus 181 ~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~--~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~-~ 257 (559)
T KOG2081|consen 181 GSWLRLHVFPPDQVLASFPLITLAFRSLSDD--ELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAM-A 257 (559)
T ss_pred hhhhhhccCCHHHHHhhhHHHHHHHHHcccc--hhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhh-c
Confidence 54332 11 124566666667633 34445555555544322111 0 11 12222222111 1
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhh---hccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhC-----c---hhh
Q 000934 221 GAKPEMIRTNIQMVGALSRAVGYR---FGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC-----P---RDI 289 (1219)
Q Consensus 221 ~~~~~~~~~~i~~l~~l~~~~~~~---~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~-----~---~~~ 289 (1219)
..+.+.++.+...|..+....-.. -..+.-.++..++-... ..+.++-+..+..+-.+-+.. + .-+
T Consensus 258 ~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~---h~~~evie~SF~fW~~lse~l~~~~~~~~~~~f 334 (559)
T KOG2081|consen 258 GEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAG---HNDTEVIEASFNFWYSLSEELTLTDDDEALGIF 334 (559)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhcc---CCchhhhhhhHHhhhhhHHHHhccccHHHHHHh
Confidence 223455666666666555542211 01122334444444444 345677777777766654321 1 257
Q ss_pred cccHHHHHHHHHHhcccCCCCCCCCCCCccccccc-----c---------cchhhccCCCC--CCCcccHHHHHHHHHHH
Q 000934 290 SSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYE-----E---------EEEDESANEYT--DDEDASWKVRRAAAKCL 353 (1219)
Q Consensus 290 ~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~-----~---------~~d~~~~~~~~--dddD~swkVR~~Aa~~l 353 (1219)
+||..+++..+.+-++|.| |.++.-++.++..+. | ++|.....-|. ++...+|..=+||...+
T Consensus 335 rpy~~rLvs~l~~h~qlp~-~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e~~~~We~~EAaLF~l 413 (559)
T KOG2081|consen 335 RPYFLRLVSLLKRHVQLPP-DQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKENNASWEEVEAALFIL 413 (559)
T ss_pred HHHHHHHHHHHHHHccCCC-ccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 8999999999999999988 543332221110000 0 00111011111 22467899999999999
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 000934 354 AALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQ 400 (1219)
Q Consensus 354 ~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~ 400 (1219)
..++.+.+..-.++...++..+ -++.+..+ +|...+..++++-+-
T Consensus 414 ~~~~~~~~~~e~~i~pevl~~i-~nlp~Q~~-~~~ts~ll~g~~~ew 458 (559)
T KOG2081|consen 414 RAVAKNVSPEENTIMPEVLKLI-CNLPEQAP-LRYTSILLLGEYSEW 458 (559)
T ss_pred HHHhccCCccccchHHHHHHHH-hCCccchh-HHHHHHHHHHHHHHH
Confidence 9999987633333444444332 22333333 776666666655443
No 193
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=93.53 E-value=22 Score=43.04 Aligned_cols=355 Identities=16% Similarity=0.190 Sum_probs=187.9
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcc--chhhHHHHHHHHHHhhhcChhh
Q 000934 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVA--GDVSGLAVKCLAPLVKKVSEPR 81 (1219)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~--~eVq~~A~k~l~~l~~~~~~~~ 81 (1219)
-.|+.+|.|+.+++..+|---++=| +++++.- + ......-=+..|+....+++ .-|||.+.--+..=+.++..+.
T Consensus 23 ~~L~plLlkl~S~~~~VR~kV~eil-~hin~Ri-k-~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e 99 (501)
T PF13001_consen 23 KYLPPLLLKLASPHASVRKKVIEIL-SHINKRI-K-SNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEE 99 (501)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHH-HHHHHHh-c-cCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHH
Confidence 3577889999999999998654433 3443311 0 00112223567888888876 8899999977776678898888
Q ss_pred HHHHHHHHHHHhcCCCcchhhHHHHHHHH---HHhhcCC---h--------hhh------HHHH-HhHhHHHHHhh----
Q 000934 82 VVEMTDKLCIKLLNGKDQHRDIASIALKT---IIAEVTT---S--------SLA------QSIH-TSLTPQLTKGI---- 136 (1219)
Q Consensus 82 ~~~l~~~L~~~~~~~~~~~r~~a~~aL~~---~i~~~~~---~--------~~~------~~~~-~~l~p~L~~~l---- 136 (1219)
-.++++.++..+..-..+++++....... ++.-.+. + ... .... ..+.|.....+
T Consensus 100 ~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~l~~ 179 (501)
T PF13001_consen 100 RRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDFCDDVFLAPWFSKFLLLQP 179 (501)
T ss_pred HHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcchHHHHHcchhhcccccccc
Confidence 89999999999865444444433332222 2221111 0 000 0000 11122221111
Q ss_pred ---------hccCC------------C-----------hhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChH
Q 000934 137 ---------TLKDM------------N-----------TEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQA 184 (1219)
Q Consensus 137 ---------~~~~~------------~-----------~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~ 184 (1219)
...+. . .+++...+..|. ..+-+..+.+...+ -.-.|++.
T Consensus 180 ~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~-------sg~f~d~~~~~~~l-iAsad~~~ 251 (501)
T PF13001_consen 180 NRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLA-------SGFFPDEERFPPLL-IASADSNS 251 (501)
T ss_pred ccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHH-------hcCCCcHhHHhhee-eEEeCCcc
Confidence 00000 0 001111111111 11111112222222 22245667
Q ss_pred HHHHHHHHHHHHHHhhCCHH-HHHHHHHHHHH-Hhh----cCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHH
Q 000934 185 SVRKKSVSCIASLASSLSDD-LLAKATIEVVR-NLR----SKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLID 258 (1219)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~-~~~~l~~~ll~-~l~----~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~ 258 (1219)
.|...|-..|-.+...+.+. +++.++...+. ++. .+..+...|. ..++.++++... ....+.++..+..
T Consensus 252 ~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~---kIL~~L~kS~~A--a~~~~~~~~i~~~ 326 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQE---KILSLLSKSVIA--ATSFPNILQIVFD 326 (501)
T ss_pred hHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHH---HHHHHHHHhHHH--HhCCccHHHHHhc
Confidence 89999999998887776665 45555555552 111 1112223333 455666665321 2244666666666
Q ss_pred hhhccCCCChHHHHHHHHHH---HHHHHhCchhh-cccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCC
Q 000934 259 YCTSASENDEELREYSLQAL---ESFLLRCPRDI-SSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANE 334 (1219)
Q Consensus 259 ~~~~~~~~d~elre~al~~l---~~l~~~~~~~~-~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~ 334 (1219)
.+... .....+|..+++.+ ......++..+ ...-+-|+.-+.+.+. + +.. ...
T Consensus 327 ~l~~~-~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~-~-~~~--------------------~~~ 383 (501)
T PF13001_consen 327 GLYSD-NTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQ-D-SSS--------------------QSN 383 (501)
T ss_pred cccCC-ccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccc-c-ccc--------------------cCC
Confidence 66531 12567888888888 76677666322 1222222222222221 0 000 000
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhc
Q 000934 335 YTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTG 402 (1219)
Q Consensus 335 ~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~ 402 (1219)
...+-+.|..+=++||.+....|..+..=+ .++..|...+.+..+++|..+-+++..++....
T Consensus 384 ----~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 384 ----SSEDIELRSLAYETLGLLAKRAPSLFSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred ----CcccHHHHHHHHHHHHHHHccCcccccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 011237899999999999999997663222 234455566677788999999999998887643
No 194
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=6.7 Score=43.50 Aligned_cols=184 Identities=14% Similarity=0.098 Sum_probs=104.8
Q ss_pred cCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHH----HHHHHH
Q 000934 14 TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV----EMTDKL 89 (1219)
Q Consensus 14 ~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~----~l~~~L 89 (1219)
.++|++-|--|+..|...+..-.--.|=- --.....|+..+++++.++|..|..+||..+...+.-+.. ..+.+|
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~-~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLI-SLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHh-hccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 45677778888888866654311000000 1123445566999999999999999999998755543221 345677
Q ss_pred HHHhcCC-CcchhhHHHHHHHHHHhhcCChhhhHHHHH-hHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHh
Q 000934 90 CIKLLNG-KDQHRDIASIALKTIIAEVTTSSLAQSIHT-SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSND 167 (1219)
Q Consensus 90 ~~~~~~~-~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~-~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~ 167 (1219)
+..+.++ +...|.-+..|+..+|.+.++. ...+.+ .=+-.|...+++.+.+...+..++..+..++..--..-...
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g--~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPG--QDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHH--HHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7777644 4456678888888888776641 111110 00123445555543457778888888888876543221111
Q ss_pred HHHHHHHHhhhhc-CChHHHHHHHHHHHHHHHhh
Q 000934 168 HERLLSALLPQLS-ANQASVRKKSVSCIASLASS 200 (1219)
Q Consensus 168 ~~~l~~~ll~~l~-~~~~~vrk~a~~~l~~l~~~ 200 (1219)
-+...+..+..+. .-+..++..++.++-.+...
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 1222222222222 22346777777776655543
No 195
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=93.24 E-value=0.78 Score=54.72 Aligned_cols=186 Identities=13% Similarity=0.150 Sum_probs=116.6
Q ss_pred hhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 000934 509 YIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGL 588 (1219)
Q Consensus 509 ~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~ 588 (1219)
|-..++|.+++.++-.+..+|.--|.-+.+++..+.+ ..+-.++++.+...+. |++..+|+..+.+|..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~---------~~~~d~I~phv~~G~~--DTn~~Lre~Tlksm~~ 395 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK---------QILNDQIFPHVALGFL--DTNATLREQTLKSMAV 395 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH---------HhhcchhHHHHHhhcc--cCCHHHHHHHHHHHHH
Confidence 7778999999999877777887777777777766643 2345677887777664 7789999999999999
Q ss_pred HHHhhccc-ccchhhhHHHHHHHhhcCCchHHHHHHHHHHHhcCCCCCchhHHHHH--HHHHHHHHHHHhhhHHHHHHHH
Q 000934 589 VISTFGDN-LGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEH--VIAELTAFLRKANRALRQATLG 665 (1219)
Q Consensus 589 l~~~~g~~-l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~--~l~~L~~~L~~~~~~lr~~al~ 665 (1219)
++..++.. +...+-+++..+-. -.+-..|..+.-+++.|+..- .+.... +.......++++-..-|.+++.
T Consensus 396 La~kL~~~~Ln~Ellr~~ar~q~-d~~~~irtntticlgki~~~l-----~~~~R~~vL~~aftralkdpf~paR~a~v~ 469 (690)
T KOG1243|consen 396 LAPKLSKRNLNGELLRYLARLQP-DEHGGIRTNTTICLGKIAPHL-----AASVRKRVLASAFTRALKDPFVPARKAGVL 469 (690)
T ss_pred HHhhhchhhhcHHHHHHHHhhCc-cccCcccccceeeeccccccc-----chhhhccccchhhhhhhcCCCCCchhhhhH
Confidence 99888764 43333222222211 011235666666777665211 111111 1112223344555667888777
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHHHHHHHhh
Q 000934 666 TMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMA 714 (1219)
Q Consensus 666 ~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~~ 714 (1219)
.+....+-+. ..+....|++.+.++.-+++..++..++..+.....
T Consensus 470 ~l~at~~~~~---~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 470 ALAATQEYFD---QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred HHhhcccccc---hhhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 7765433221 123446678888888888888888888887776655
No 196
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=93.20 E-value=13 Score=42.82 Aligned_cols=96 Identities=9% Similarity=0.043 Sum_probs=46.3
Q ss_pred hhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCCh---HHHHHHHHHHHH
Q 000934 119 SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQ---ASVRKKSVSCIA 195 (1219)
Q Consensus 119 ~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~---~~vrk~a~~~l~ 195 (1219)
.+++-+++.++-.+..+.... +..+...++..++-|+.. .+ .|.-..++++.-.|..|. ..|--.-+.-.|
T Consensus 230 ~IgElLlkrLilqf~r~f~Rn--Dk~~c~~~~kfiahLinq---~V-ahEIv~Leil~lLLe~PTddSvevaI~flkecG 303 (739)
T KOG2140|consen 230 QIGELLLKRLILQFKRSFRRN--DKVSCLNASKFIAHLINQ---QV-AHEIVALEILTLLLERPTDDSVEVAIAFLKECG 303 (739)
T ss_pred hHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 455666666666666655543 344444555555444321 11 233445566666666543 334333344444
Q ss_pred HHHhhCCHHHHHHHHHHHHHHhhcC
Q 000934 196 SLASSLSDDLLAKATIEVVRNLRSK 220 (1219)
Q Consensus 196 ~l~~~~~~~~~~~l~~~ll~~l~~~ 220 (1219)
.-..-.++..++.+...+-..|...
T Consensus 304 akL~~VSpr~~n~IfErlR~ILhe~ 328 (739)
T KOG2140|consen 304 AKLAEVSPRALNGIFERLRYILHEG 328 (739)
T ss_pred HHHHHhChHHHhHHHHHHHHHHhHh
Confidence 4333344444555555554444433
No 197
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.05 E-value=5.3 Score=42.18 Aligned_cols=194 Identities=14% Similarity=0.196 Sum_probs=102.6
Q ss_pred HHHHHHhhhc--ccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHH
Q 000934 371 ACPKLIDRFK--EREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAF 448 (1219)
Q Consensus 371 i~p~Li~~~~--d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~ 448 (1219)
.+|.|+..+. ++++-||.++..+++++.. |.+++.+.+..+++...++ .+|.
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~~-------------------------~~~~~~l~k~~~dp~~~v~-ETc~ 121 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD-------------------------PESLEILTKYIKDPCKEVR-ETCE 121 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhcc-------------------------hhhHHHHHHHhcCCccccc-hHHH
Confidence 4566666553 4578899999999988752 2233444555566666777 7666
Q ss_pred HHHHHHHHhcch-h---hhhhh------h---hhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHH
Q 000934 449 SVLRELVVVLPD-C---LADHI------G---SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSS 515 (1219)
Q Consensus 449 ~~L~~L~~~~~~-~---l~~~~------~---~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p 515 (1219)
-++..+--.... . -.++. + .-+..+...+.|.+..-.-|..++-.++ +++. +.-+-
T Consensus 122 lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LR----n~g~-------EeaI~ 190 (289)
T KOG0567|consen 122 LAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLR----NIGT-------EEAIN 190 (289)
T ss_pred HHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhh----ccCc-------HHHHH
Confidence 666554322100 0 00010 0 0022222222222211111222221111 1111 23355
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcc
Q 000934 516 PVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD 595 (1219)
Q Consensus 516 ~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~ 595 (1219)
.+...+.+.+.-.+.++-.+++++-.- . -++.+.+.|.......-||..|..+||.++.
T Consensus 191 al~~~l~~~SalfrhEvAfVfGQl~s~----------~-------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---- 249 (289)
T KOG0567|consen 191 ALIDGLADDSALFRHEVAFVFGQLQSP----------A-------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD---- 249 (289)
T ss_pred HHHHhcccchHHHHHHHHHHHhhccch----------h-------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----
Confidence 666777777777788888888887321 1 1233333444444467899999999987642
Q ss_pred cccchhhhHHHHHHHhhcCCc--hHHHHHHHHHHH
Q 000934 596 NLGAELPACLPVLVDRMGNEI--TRLTAVKAFAVI 628 (1219)
Q Consensus 596 ~l~~~~~~~l~~L~~~L~~e~--~r~~a~~al~~i 628 (1219)
+.++++|.+.++++. +|..+.-+++..
T Consensus 250 ------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 250 ------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred ------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 566777777776553 455666666543
No 198
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=1 Score=50.40 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=98.1
Q ss_pred cHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHH
Q 000934 342 SWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLK 421 (1219)
Q Consensus 342 swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~ 421 (1219)
+-+||+-|..-+..++.++|..+...+..+++.+..++.|++-.||...++.+..++-... +. .+.
T Consensus 71 NakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~-------------~e-~~s 136 (393)
T KOG2149|consen 71 NAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPAC-------------KE-DQS 136 (393)
T ss_pred hHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcc-------------hh-hhc
Confidence 4589999999999999999988887777788888888899999999999998888776543 22 355
Q ss_pred HHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhc
Q 000934 422 QEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN 478 (1219)
Q Consensus 422 ~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~ 478 (1219)
.+++-++..+...+..-.+.+| ..++.+|.-+.+..|+.+..+...+++.....+.
T Consensus 137 p~~~l~~~yi~~AMThit~~i~-~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHITPEIQ-EDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred chHHHHHHHHHHHHhhccHHHH-HhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 6677778888888887778889 9999999999999988887766656666655543
No 199
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.69 E-value=8.9 Score=48.19 Aligned_cols=114 Identities=20% Similarity=0.339 Sum_probs=68.0
Q ss_pred HHHHHHHhhhhcCC----hHHHHHHHHHHHHHHHhh-CCH------------HHHHHHHHHHHHHhhcC--CCChHHHHH
Q 000934 169 ERLLSALLPQLSAN----QASVRKKSVSCIASLASS-LSD------------DLLAKATIEVVRNLRSK--GAKPEMIRT 229 (1219)
Q Consensus 169 ~~l~~~ll~~l~~~----~~~vrk~a~~~l~~l~~~-~~~------------~~~~~l~~~ll~~l~~~--~~~~~~~~~ 229 (1219)
..+++.+...+.++ +..++..|+.+++.++.. +.. ...+.+++.+...+... ..+...+..
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 44555555555543 346999999999988753 222 12444555555555421 112356778
Q ss_pred HHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhccc
Q 000934 230 NIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSY 292 (1219)
Q Consensus 230 ~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~ 292 (1219)
++.++|.+.. +.+++.+..++.........+|-.|++||..++..||..+++.
T Consensus 510 ~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~ 562 (618)
T PF01347_consen 510 YLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREI 562 (618)
T ss_dssp HHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHH
T ss_pred HHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHH
Confidence 8999988842 4566666666654323467899999999998888888555443
No 200
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.68 E-value=1.2 Score=49.85 Aligned_cols=114 Identities=16% Similarity=0.211 Sum_probs=97.0
Q ss_pred HHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchh
Q 000934 429 KSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHP 508 (1219)
Q Consensus 429 ~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~ 508 (1219)
+-+..+++..+.++| ..++..+..+...+|..+..|.-.+++.+...+.|.. ..+|.....++..++....++.+.|
T Consensus 61 keLl~qlkHhNakvR-kdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~--~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVR-KDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDD--SLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred HHHHhhhcCchHhhh-HHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCcc--ccHHHHHHHHHHHHHhhcchhhhcc
Confidence 445566777888999 9999999998888888888899999999988888764 5788888888888777767777889
Q ss_pred hhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 000934 509 YIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRP 545 (1219)
Q Consensus 509 ~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~ 545 (1219)
++.-++|.+..++....+.++..++..+.-++..+.|
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 9999999999999988899999999999999887643
No 201
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=92.59 E-value=2.4 Score=45.00 Aligned_cols=135 Identities=16% Similarity=0.215 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhcc---CCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHH
Q 000934 225 EMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSA---SENDEELREYSLQALESFLLRCPRDISSYCDEILHLTL 301 (1219)
Q Consensus 225 ~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~---~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l 301 (1219)
+.|.+++.++ +-.+-+.+++|+++++++++ +-.+-++-...+....++...-.-.+.||+.+++|.++
T Consensus 213 ~~r~aAl~sL---------r~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSil 283 (450)
T COG5095 213 QTRDAALESL---------RNDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSIL 283 (450)
T ss_pred HHHHHHHHHh---------ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHH
Confidence 5566555544 23456677888888777621 01122222233333333443333356799999999887
Q ss_pred Hhccc-----CCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Q 000934 302 EYLSY-----DPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLI 376 (1219)
Q Consensus 302 ~~l~~-----dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li 376 (1219)
.++-. +|+ |..-+.+|..|+.+++-++..+|.....+-..+.-.++
T Consensus 284 Tcliakklg~~p~-----------------------------dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTll 334 (450)
T COG5095 284 TCLIAKKLGNVPD-----------------------------DHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLL 334 (450)
T ss_pred HHHHHHHhcCCCc-----------------------------chhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHH
Confidence 76531 221 11124799999999999999998765555556666667
Q ss_pred hhhccc--chhHHHHHHHHHHHH
Q 000934 377 DRFKER--EENVKMDVFNTFIEL 397 (1219)
Q Consensus 377 ~~~~d~--~~~Vr~~~~~~l~~l 397 (1219)
+.|-|+ -+.....++.++..+
T Consensus 335 KafLD~~k~~sT~YGalkgls~l 357 (450)
T COG5095 335 KAFLDREKTESTQYGALKGLSIL 357 (450)
T ss_pred HHHHhcccccchhhhhhhhhhhh
Confidence 777444 355666666665554
No 202
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.38 E-value=28 Score=41.02 Aligned_cols=150 Identities=16% Similarity=0.214 Sum_probs=84.5
Q ss_pred CchhhhhhhHHHHHHHhcC------------CchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhc
Q 000934 505 VFHPYIKALSSPVLAAVGE------------RYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ 572 (1219)
Q Consensus 505 ~~~~~l~~i~p~l~~~l~d------------~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~ 572 (1219)
.|+||..+++..+...++- .+...|....+++.++.-.++.. .-++. +..++..+
T Consensus 333 ~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~---------e~lk~----~~~~l~e~ 399 (559)
T KOG2081|consen 333 IFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSD---------ECLKQ----MYIRLKEN 399 (559)
T ss_pred HhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcH---------HHHHH----HHHHHccC
Confidence 5678888888888776641 12345555555666665554432 22333 33444445
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCCchHHHHHHHHHHHh---cCCCCCchhHHHHHHHHHHH
Q 000934 573 DQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIA---ASPLHIDLTCVLEHVIAELT 649 (1219)
Q Consensus 573 d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~---~s~~~~~~~~~l~~~l~~L~ 649 (1219)
+.+++.-|+|+.++..++.+....=.+.++.++..++..-.....|-+++-.+|.+. ... +.++..++..+.
T Consensus 400 ~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~-----p~~le~v~~~~~ 474 (559)
T KOG2081|consen 400 NASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQH-----PELLEPVLRYIR 474 (559)
T ss_pred CCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhC-----cHHHHHHHHHHH
Confidence 667999999999999888776443334556666665533222235677777777654 111 334444444444
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHh
Q 000934 650 AFLRKANRALRQATLGTMNSLVVAY 674 (1219)
Q Consensus 650 ~~L~~~~~~lr~~al~~L~~l~~~~ 674 (1219)
..+.... +..++..++..+...+
T Consensus 475 ~~~~~~~--~as~~a~~~~~i~~~c 497 (559)
T KOG2081|consen 475 QGLQLKR--LASAAALAFHRICSAC 497 (559)
T ss_pred HHhhhcc--hhHHHHHHHHHHHHHH
Confidence 4443322 4455555555555544
No 203
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.30 E-value=32 Score=41.49 Aligned_cols=299 Identities=14% Similarity=0.176 Sum_probs=164.0
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhcc-
Q 000934 169 ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGP- 247 (1219)
Q Consensus 169 ~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~- 247 (1219)
..+...+...|.+.++.----|++|++.++..---+.|..-++.+ |.+++..+-+|+.+.-|+-.+.+..|+-+.+
T Consensus 110 klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~Kl---LvS~~~~~~vkqkaALclL~L~r~spDl~~~~ 186 (938)
T KOG1077|consen 110 KLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKL---LVSGSSMDYVKQKAALCLLRLFRKSPDLVNPG 186 (938)
T ss_pred HHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHH---HhCCcchHHHHHHHHHHHHHHHhcCccccChh
Confidence 444555666676767766777888888877543333343334433 4444443467888888888898988876554
Q ss_pred -chhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhccc---C-CCCCCCCCCCccccc
Q 000934 248 -HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSY---D-PNFTDNMEEDSDDEA 322 (1219)
Q Consensus 248 -~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~---d-pn~~~~~d~d~~~~~ 322 (1219)
+...|+ +.+. |.+-.+--++...++.++.+.|++...-++..+..+.+...- | -+|.
T Consensus 187 ~W~~riv----~LL~---D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYT----------- 248 (938)
T KOG1077|consen 187 EWAQRIV----HLLD---DQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYT----------- 248 (938)
T ss_pred hHHHHHH----HHhC---ccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhce-----------
Confidence 445444 4444 344455567778888999999987776666666655544320 0 0000
Q ss_pred ccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhc
Q 000934 323 YEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTG 402 (1219)
Q Consensus 323 ~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~ 402 (1219)
.| ---.-|= ..++++ ++..+| ..++..+|....+++..++..+.
T Consensus 249 -----------yy--~vP~PWL----~vKl~r-lLq~~p------------------~~~D~~~r~~l~evl~~iLnk~~ 292 (938)
T KOG1077|consen 249 -----------YY--FVPAPWL----QVKLLR-LLQIYP------------------TPEDPSTRARLNEVLERILNKAQ 292 (938)
T ss_pred -----------ee--cCCChHH----HHHHHH-HHHhCC------------------CCCCchHHHHHHHHHHHHHhccc
Confidence 00 0122352 222222 222223 12222333333333333333222
Q ss_pred cc---CccccCC---------------CCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcch--hh
Q 000934 403 NV---TKGQIDN---------------NELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPD--CL 462 (1219)
Q Consensus 403 ~~---~~~~~~~---------------~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~--~l 462 (1219)
.. ++..... ....| +.+..-+..+.+.+.++....| .-++.-+..|+..-+. .+
T Consensus 293 ~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~-----~ll~~~~~~Lg~fls~rE~NiR-YLaLEsm~~L~ss~~s~dav 366 (938)
T KOG1077|consen 293 EPPKSKKVQHSNAKNAVLFEAISLAIHLDSEP-----ELLSRAVNQLGQFLSHRETNIR-YLALESMCKLASSEFSIDAV 366 (938)
T ss_pred cCccccchHhhhhHHHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHHhhcccccch-hhhHHHHHHHHhccchHHHH
Confidence 00 0000000 00011 2234445667777888888888 7777777777765322 12
Q ss_pred hhhhhhhhHhHHHhhc-CCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 000934 463 ADHIGSLIPGIEKSLN-DKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVR 541 (1219)
Q Consensus 463 ~~~~~~l~~~l~~~l~-d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~ 541 (1219)
..| ...|+..|+ ++ +..+|..++.+|-.++... ....|+..+++.+...+|.++++-.--+.-+.+
T Consensus 367 K~h----~d~Ii~sLkter--DvSirrravDLLY~mcD~~-------Nak~IV~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 367 KKH----QDTIINSLKTER--DVSIRRRAVDLLYAMCDVS-------NAKQIVAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHH----HHHHHHHhcccc--chHHHHHHHHHHHHHhchh-------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 234 344556666 33 2568889999999987642 246677777777777777777776555555555
Q ss_pred hc
Q 000934 542 VL 543 (1219)
Q Consensus 542 ~l 543 (1219)
..
T Consensus 434 Ky 435 (938)
T KOG1077|consen 434 KY 435 (938)
T ss_pred Hh
Confidence 43
No 204
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.27 E-value=44 Score=43.01 Aligned_cols=154 Identities=18% Similarity=0.260 Sum_probs=107.1
Q ss_pred cchHHHHHHhc----CCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHhhcc-CCChHHHHHHHHHHHHHHhcCch
Q 000934 965 KLVPALKVRTT----SSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIK-DQDRHVRRAAVLALSTFAHNKPN 1039 (1219)
Q Consensus 965 ~~lp~l~~~l~----~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~-D~~~~vR~~a~~~L~~~~~~~p~ 1039 (1219)
.+.|.+.+.++ -.+|..+.++.-++.-++--. ..+....++.|+..+. -+++-||..++.+++-++-..|.
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS----a~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS----AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 56677777663 234667777766665444322 2456677888999888 67889999999999999999999
Q ss_pred hhhchhhhhhHHHHHhhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhhhcCCCchhchHHHHhcccCC-cc
Q 000934 1040 LIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLED-HY 1118 (1219)
Q Consensus 1040 ~i~~~l~~llp~l~~~~~~~~elir~v~mgpfkh~~Ddgle~Rk~a~e~l~~ll~~~~~~~~~~~~~~~~~~~gl~D-~~ 1118 (1219)
++-|+-+. ||+.+. |....+||+|+-+|.-|+-.- -+-+.-++ +-...-|.| +.
T Consensus 995 lie~~T~~----Ly~rL~------------------D~~~~vRkta~lvlshLILnd--miKVKGql-~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 995 LIEPWTEH----LYRRLR------------------DESPSVRKTALLVLSHLILND--MIKVKGQL-SEMALCLEDPNA 1049 (1251)
T ss_pred ccchhhHH----HHHHhc------------------CccHHHHHHHHHHHHHHHHhh--hhHhcccH-HHHHHHhcCCcH
Confidence 98776544 665543 667889999999888886542 23344455 345566778 77
Q ss_pred hhHhhHHHHHHHHHhhCchhHHHhHHHhhH
Q 000934 1119 DVKMPCHLILSKLADKCPSAVLAVLDSLVD 1148 (1219)
Q Consensus 1119 di~~l~~~~l~~l~~~~p~~~~~~l~~l~~ 1148 (1219)
.|+-+|-.-.-.|.++. ..+.+.|..++-
T Consensus 1050 ~IsdlAk~FF~Els~k~-n~iynlLPdil~ 1078 (1251)
T KOG0414|consen 1050 EISDLAKSFFKELSSKG-NTIYNLLPDILS 1078 (1251)
T ss_pred HHHHHHHHHHHHhhhcc-cchhhhchHHHH
Confidence 89999987777777655 444444444443
No 205
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=92.17 E-value=5.6 Score=46.62 Aligned_cols=226 Identities=16% Similarity=0.197 Sum_probs=118.6
Q ss_pred CcccHHHHHHHHHHHHHHHhcCch-hhHH-HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCCh
Q 000934 339 EDASWKVRRAAAKCLAALIVSRPE-MLSK-LYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNP 416 (1219)
Q Consensus 339 dD~swkVR~~Aa~~l~~li~~~~~-~l~~-~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 416 (1219)
-|.+|.=-.-.=..+-.++.+.+. .... +-...+-.|+.+|...++.-|......+..+...... .
T Consensus 100 ~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~------------~ 167 (409)
T PF01603_consen 100 LEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPN------------L 167 (409)
T ss_dssp --TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TT------------T
T ss_pred cccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh------------h
Confidence 367898777777777788777542 1111 2234556677788777777776666666555543211 1
Q ss_pred hHHHHHHHHHHHHHHHHHhcc-cCccchhhHHHHHHHHHHHhc---------------------chhhhhhhhhhhHhHH
Q 000934 417 RWLLKQEVSKIVKSINRQLRE-KSIKTKQVGAFSVLRELVVVL---------------------PDCLADHIGSLIPGIE 474 (1219)
Q Consensus 417 ~~~L~~~~p~lv~~l~~~L~~-~~~~~r~~~~~~~L~~L~~~~---------------------~~~l~~~~~~l~~~l~ 474 (1219)
+..+... +...+.+..-+ .....- ..++.++++++..+ +..+..+.+++...+.
T Consensus 168 r~~Ir~~---i~~~~~~fi~e~~~~~gI-~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~ 243 (409)
T PF01603_consen 168 RSFIRKS---INNIFYRFIYETERHNGI-AELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVV 243 (409)
T ss_dssp HHHHHHH---HHHHHHHHHHTTS--STH-HHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHhcCcccccCH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 1111111 11111111111 111122 33344444444322 1122333344433333
Q ss_pred Hhhc-CCC---------------CcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHH
Q 000934 475 KSLN-DKS---------------STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGE 538 (1219)
Q Consensus 475 ~~l~-d~~---------------~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~ 538 (1219)
..+. |+. +++.-..--+..+..+++..++..+......+...+..+++.+++.|+..|+..+.+
T Consensus 244 ~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n 323 (409)
T PF01603_consen 244 QFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN 323 (409)
T ss_dssp HHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS
T ss_pred HHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 3322 111 111122334456777788777788888899999999999999999999999877643
Q ss_pred H--HHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCC---CHHHHHHHHHHHHHHHH
Q 000934 539 L--VRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQ---DQEVKECAISCMGLVIS 591 (1219)
Q Consensus 539 l--~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~---d~~vr~~Ai~alg~l~~ 591 (1219)
= +..+ ..+-..+++.++..+..... +..||..|..++..+..
T Consensus 324 ~~~~~li-----------~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 324 EYFLSLI-----------SQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHH-----------HCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHH-----------HhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2 3322 23445566666666643222 47799999988876653
No 206
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.17 E-value=5.3 Score=49.82 Aligned_cols=180 Identities=17% Similarity=0.142 Sum_probs=121.3
Q ss_pred hhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhc---CC-
Q 000934 21 RYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLL---NG- 96 (1219)
Q Consensus 21 R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~---~~- 96 (1219)
|+-||.-|-..|.-+..-.+-..---|.+.+|++|.++..|.|-.=+-.-+.+...=+.-|++-+-+.-..++. ++
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 78898888888876554444455567999999999999999998777666665532233333222222222221 11
Q ss_pred ---CcchhhHHHHHHHHHHhhcCChhhhHHH-HHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhh-hhHhHHHH
Q 000934 97 ---KDQHRDIASIALKTIIAEVTTSSLAQSI-HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL-MSNDHERL 171 (1219)
Q Consensus 97 ---~~~~r~~a~~aL~~~i~~~~~~~~~~~~-~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~-l~~~~~~l 171 (1219)
+.++|.+++..|..++.+++.. +... -..++...++.+.+.. ++-.|.=.+-+||.|-++|... .......-
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lG--Q~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLG--QKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchh--HHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 2367999999999999887641 1111 1334555566666542 5778888888999888877543 22234455
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhCCH
Q 000934 172 LSALLPQLSANQASVRKKSVSCIASLASSLSD 203 (1219)
Q Consensus 172 ~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~ 203 (1219)
.+.+...|.|+-+.||..|+-|||.|.....+
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d 675 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSD 675 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhccccc
Confidence 66777888899999999999999999987544
No 207
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=91.92 E-value=3.1 Score=47.41 Aligned_cols=95 Identities=17% Similarity=0.277 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhc----------CCchHHHHHHHHHHHHHHHhccCCccCCCCCCc
Q 000934 486 LKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG----------ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFK 555 (1219)
Q Consensus 486 ~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~----------d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~ 555 (1219)
.-...+..+.+++.+. .-.+.+|+.+++|.++.|+- +.++.+|..|-.++..+++.++. .+.
T Consensus 233 ~L~~lm~~v~ALl~N~-~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~-------~y~ 304 (343)
T cd08050 233 LLIYLMRMVRALLDNP-NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFST-------SYN 304 (343)
T ss_pred HHHHHHHHHHHHhcCC-CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCC-------CCC
Confidence 3445567777777763 23567899999999999882 34568899999999999987644 344
Q ss_pred ccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 000934 556 PYVQPIYNAIMSRLTNQDQDQEVKECAISCMGL 588 (1219)
Q Consensus 556 ~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~ 588 (1219)
..-+.++..+...+.+........=.|+.+++.
T Consensus 305 ~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~ 337 (343)
T cd08050 305 TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSA 337 (343)
T ss_pred cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH
Confidence 445555555565555333222224445555443
No 208
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.89 E-value=8.1 Score=45.14 Aligned_cols=122 Identities=15% Similarity=0.171 Sum_probs=79.5
Q ss_pred HHHHHh-hcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHH
Q 000934 108 LKTIIA-EVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASV 186 (1219)
Q Consensus 108 L~~~i~-~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~v 186 (1219)
|+++++ .++..+-+..+...++-.++.+...+ +..||..+|.+|.-+..+.++.=..-...++..+..-+-|.++.|
T Consensus 71 l~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~esk--dk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~V 148 (885)
T COG5218 71 LKRFFEYDMPDDPEGEELVAGTFYHLLRGTESK--DKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAV 148 (885)
T ss_pred HHHHHHhcCCCChhhhHHHHHHHHHHHhcccCc--chhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHH
Confidence 444554 33332222333444444566666654 688999999999999888887544556777788888888888999
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 000934 187 RKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQM 233 (1219)
Q Consensus 187 rk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~ 233 (1219)
|..|+.||+.+-..-.++. +.+...+...++..+. +++|+.++.-
T Consensus 149 R~eAv~~L~~~Qe~~~nee-n~~~n~l~~~vqnDPS-~EVRr~alln 193 (885)
T COG5218 149 RREAVKVLCYYQEMELNEE-NRIVNLLKDIVQNDPS-DEVRRLALLN 193 (885)
T ss_pred HHHHHHHHHHHHhccCChH-HHHHHHHHHHHhcCcH-HHHHHHHHHH
Confidence 9999999998876554442 2233444444554443 5888876543
No 209
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=91.89 E-value=18 Score=41.47 Aligned_cols=98 Identities=19% Similarity=0.258 Sum_probs=60.5
Q ss_pred hhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHH
Q 000934 113 AEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVS 192 (1219)
Q Consensus 113 ~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~ 192 (1219)
..+|.......++..+.|.+ .++ .++.+....+++|+.=+..++..+ -+.+.+.+...+++.++.+|+.-+.
T Consensus 12 ~~l~~~~~s~~i~~~l~~~~----~KE-~nE~aL~~~l~al~~~~~~~~~~~---~~~~~~~~~kGl~~kk~~vR~~w~~ 83 (339)
T PF12074_consen 12 SSLPSSSLSSKIVQGLSPLL----SKE-SNEAALSALLSALFKHLFFLSSEL---PKKVVDAFKKGLKDKKPPVRRAWLL 83 (339)
T ss_pred HhCCCcchHHHHHHHHHHHH----Hhh-cCHHHHHHHHHHHHHHHHHhCcCC---CHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 34443223344455445544 332 255666666666666555553322 3677888888999998899999999
Q ss_pred HHHHHHh----hCCHHHHHHHHHHHHHHhh
Q 000934 193 CIASLAS----SLSDDLLAKATIEVVRNLR 218 (1219)
Q Consensus 193 ~l~~l~~----~~~~~~~~~l~~~ll~~l~ 218 (1219)
+++.... .........+++.+++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 84 CLGEALWESPNSDSLKFAEPFLPKLLQSLK 113 (339)
T ss_pred HHHHHHhhccCchHHHHHHHHHHHHHHHHH
Confidence 9998875 2223345566666666654
No 210
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=91.44 E-value=47 Score=41.60 Aligned_cols=104 Identities=14% Similarity=0.243 Sum_probs=70.6
Q ss_pred cchHhHHHHHHhhhhcc---CcccchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHhhccCCChH
Q 000934 945 EGVRNVVAECLGKIALI---EPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRH 1021 (1219)
Q Consensus 945 e~~r~~~ae~LG~l~~~---~p~~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~D~~~~ 1021 (1219)
-.+|+...-++|-+|.. ..+.|+|.+...|.++++-+|.-.+--+--++..+ +-..=..++-.|+..+-|.+++
T Consensus 983 ~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~---~vKw~G~Lf~Rf~l~l~D~~ed 1059 (1529)
T KOG0413|consen 983 HAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFG---IVKWNGELFIRFMLALLDANED 1059 (1529)
T ss_pred HHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhh---hhhcchhhHHHHHHHHcccCHH
Confidence 34666666667777763 34579999999999999998855555554455433 1222234677888888899999
Q ss_pred HHHHHHHHHHHHHhcC-chhhhchhhhhhHHHHH
Q 000934 1022 VRRAAVLALSTFAHNK-PNLIKGLLPELLPLLYD 1054 (1219)
Q Consensus 1022 vR~~a~~~L~~~~~~~-p~~i~~~l~~llp~l~~ 1054 (1219)
||+.|-..++.+...+ |..+..+ +...+|.
T Consensus 1060 Ir~~a~f~~~~vL~~~~P~~f~~~---FVe~i~~ 1090 (1529)
T KOG0413|consen 1060 IRNDAKFYISEVLQSEEPNFFPLN---FVEYIIA 1090 (1529)
T ss_pred HHHHHHHHHHHHHhhcCccchHHH---HHHHHHH
Confidence 9999999999987654 5544444 4444444
No 211
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=91.39 E-value=39 Score=40.60 Aligned_cols=139 Identities=11% Similarity=0.091 Sum_probs=95.2
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhh--HhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH---H-HHHHHHHHHH
Q 000934 142 NTEIRCECLDILCDVLHKFGNLMS--NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---L-LAKATIEVVR 215 (1219)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~--~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~-~~~l~~~ll~ 215 (1219)
+..++..+|..+-.+.+.. +.+. ......++-+.+.+.+|+..|.+.+..++.+++.-+++- + -...++.+.+
T Consensus 390 d~~~~aaa~l~~~s~srsV-~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSV-SALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 3456666666554443322 1121 223455666777778999999999999999999877654 2 2456777888
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHhhh--hhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCc
Q 000934 216 NLRSKGAKPEMIRTNIQMVGALSRAVGY--RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1219)
Q Consensus 216 ~l~~~~~~~~~~~~~i~~l~~l~~~~~~--~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1219)
.+.+++. ..|..++.++-.+.-.+.. ++.++-.--...+..+++ ++|.++.|.|++.+.++...|-
T Consensus 469 ~~~~~~~--n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~n---d~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 469 MLTDPDF--NSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIN---DPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HhcCCCc--hHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHh---CCCHHHHHHHHHHHHHhhcCcH
Confidence 8777764 5777777777777666553 444444444677777777 6899999999999999886654
No 212
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.32 E-value=5.3 Score=46.54 Aligned_cols=148 Identities=15% Similarity=0.201 Sum_probs=80.3
Q ss_pred HHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCC--CCcchhHHHHHHHHHHHhccCCCCC
Q 000934 428 VKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDK--SSTSNLKIEALTFTRLVLSSHSPPV 505 (1219)
Q Consensus 428 v~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~--~~~~~~~~~al~~l~~l~~~~~~~~ 505 (1219)
.+-+.+.+.+.+...| +.|+..|.+ ..++...++.++..|.+...-. ..+-.+-+..+..+..++.+ +.=.
T Consensus 209 y~~It~a~~g~~~~~r-~eAL~sL~T-----DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N-p~i~ 281 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLR-QEALQSLET-----DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN-PNIF 281 (576)
T ss_pred HHHHHHHHhcCCHHHH-HHHHHhhcc-----CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC-Cccc
Confidence 3444444445666677 776644432 2234444444444444443321 11123444556667777765 2235
Q ss_pred chhhhhhhHHHHHHHhc----------CCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCC
Q 000934 506 FHPYIKALSSPVLAAVG----------ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQD 575 (1219)
Q Consensus 506 ~~~~l~~i~p~l~~~l~----------d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d 575 (1219)
+.||+..++|.++.|+- |.++.+|--|...+..+++.+.. .+...-..+...+...+.+....
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~-------~y~~L~~Rit~tl~k~l~D~~~~ 354 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFST-------LYNNLQPRITRTLSKALLDNKKP 354 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHhcCCCCC
Confidence 67899999999999873 45667888888888888886532 23333444444444545433223
Q ss_pred HHHHHHHHHHHHHH
Q 000934 576 QEVKECAISCMGLV 589 (1219)
Q Consensus 576 ~~vr~~Ai~alg~l 589 (1219)
..-.=.|+.++..+
T Consensus 355 ~st~YGai~gL~~l 368 (576)
T KOG2549|consen 355 LSTHYGAIAGLSEL 368 (576)
T ss_pred chhhhhHHHHHHHh
Confidence 22233344444433
No 213
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.98 E-value=2.1 Score=38.04 Aligned_cols=71 Identities=21% Similarity=0.232 Sum_probs=58.1
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 000934 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEV 213 (1219)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l 213 (1219)
...+|..++..|..+++.-. ......+.++..++..++|+++-|=-+|+++++.++...++..++.++...
T Consensus 16 ~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~~y 86 (92)
T PF10363_consen 16 LPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLDEY 86 (92)
T ss_pred CcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 46799999999999998765 222467899999999999999999999999999999998887555555443
No 214
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.93 E-value=39 Score=39.82 Aligned_cols=170 Identities=16% Similarity=0.131 Sum_probs=94.8
Q ss_pred chhHhHHHHHHHHhhhhcCcccchHHHHHHhccccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHH-hhccCCc
Q 000934 866 FEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLF-NHCESEE 944 (1219)
Q Consensus 866 ~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~~~~~~~l~alkeii~~~~~~~~~~~~~~~~~i~~~L~-~~~~~~~ 944 (1219)
++++...+-.+..++..||...-=|-++..+.+....+.. |.-.+.++++......+.+ +...+...|. -+..+.+
T Consensus 467 g~ei~~~~kS~v~nL~~~n~N~sEsD~in~~~ssa~~~~C-L~~~~~~~e~i~tpL~eNi--l~~~~~~tlI~Pavrn~a 543 (885)
T COG5218 467 GSEIKKNAKSAVENLVQGNGNVSESDIINNLPSSASPRMC-LMVCKHVMEHIRTPLSENI--LHEAIVETLILPAVRNSA 543 (885)
T ss_pred chhhcccccccccccCCCCCCCCCchhhccCccccchHHH-HHHHHHHHHHccCcchhhH--HHHHHHHHHhhhhhccCC
Confidence 3566666666667777777666667777777654322222 1222334433211011221 3344444333 2333455
Q ss_pred cchHhHHHHHHhhhhccCcc---cchHHHHHHhcCCCchhhHHHHhhhHhhh-ccCCch---hhhhhhHhHHHHHhhccC
Q 000934 945 EGVRNVVAECLGKIALIEPA---KLVPALKVRTTSSAAFTRATVVIAIKYSI-VERPEK---IDEIIFPEISSFLMLIKD 1017 (1219)
Q Consensus 945 e~~r~~~ae~LG~l~~~~p~---~~lp~l~~~l~~~~~~~R~~~~~~~k~~~-~~~~~~---~~~~l~~~i~~~l~~l~D 1017 (1219)
..+|..+.+|||--|..+.+ .=+|.+..+....+...+++++..+-.++ .++.+. ++..+..++...++.+..
T Consensus 544 ~~IrE~gve~L~l~clldv~La~~n~~i~~~cv~KGn~~lk~~A~q~~vDl~~~hg~~g~~k~ds~l~~Il~~~l~~~e~ 623 (885)
T COG5218 544 PNIRETGVEILELGCLLDVALARPNHAIIQSCVHKGNMELKSMAFQMCVDLVLSHGDEGEGKLDSLLGDILRHILQGLET 623 (885)
T ss_pred CchhhhhhhhhhhhhhhhHhhcCCchHHHHHHHhccchhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHhccCc
Confidence 78999999999887776432 22456666666667788888888776655 444333 555566666666666655
Q ss_pred CChHHHHHHHHHHHH--HHhcCchh
Q 000934 1018 QDRHVRRAAVLALST--FAHNKPNL 1040 (1219)
Q Consensus 1018 ~~~~vR~~a~~~L~~--~~~~~p~~ 1040 (1219)
++ -...+..+|.. ++|+.|+-
T Consensus 624 ~E--~q~i~aegl~Kl~l~~~~~Dd 646 (885)
T COG5218 624 KE--RQDIIAEGLSKLALSHRMPDD 646 (885)
T ss_pred hh--HHHHhhhHHHHHHHHHhCchH
Confidence 43 33344444443 45666654
No 215
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=90.77 E-value=2 Score=48.89 Aligned_cols=147 Identities=15% Similarity=0.140 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccC----C-ChhHHHHHHHHHH
Q 000934 80 PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKD----M-NTEIRCECLDILC 154 (1219)
Q Consensus 80 ~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~----~-~~~v~~~al~~L~ 154 (1219)
+....+...+.+.+.++++..|..+...|+ .+- -++.++|.+.+.+.+.- . +...-...+..+.
T Consensus 174 ~Elq~yf~~It~a~~~~~~~~r~~aL~sL~---tD~--------gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ 242 (343)
T cd08050 174 KELQLYFEEITEALVGSNEEKRREALQSLR---TDP--------GLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVR 242 (343)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhc---cCC--------CchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 444555666666665555555554433332 121 24566777776665421 0 2333444555556
Q ss_pred HHHHHhhhhhhHhHHHHHHHHhhhhc----------CChHHHHHHHHHHHHHHHhhCCHH---HHHHHHHHHHHHhhcCC
Q 000934 155 DVLHKFGNLMSNDHERLLSALLPQLS----------ANQASVRKKSVSCIASLASSLSDD---LLAKATIEVVRNLRSKG 221 (1219)
Q Consensus 155 ~l~~~~g~~l~~~~~~l~~~ll~~l~----------~~~~~vrk~a~~~l~~l~~~~~~~---~~~~l~~~ll~~l~~~~ 221 (1219)
.|+.+-.-.+.+|.-.+++.++.++- +..+.+|.-|...++.++..++.. +...++..+.+.+.++.
T Consensus 243 ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~ 322 (343)
T cd08050 243 ALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPK 322 (343)
T ss_pred HHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCC
Confidence 66666555677887778888887762 345789999999999999887665 45677777777877765
Q ss_pred CChHHHHHHHHHHHHH
Q 000934 222 AKPEMIRTNIQMVGAL 237 (1219)
Q Consensus 222 ~~~~~~~~~i~~l~~l 237 (1219)
......-+++..++.+
T Consensus 323 ~~~~~~YGAi~GL~~l 338 (343)
T cd08050 323 KPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCcchhhHHHHHHHHh
Confidence 4222334444444433
No 216
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=90.65 E-value=23 Score=40.51 Aligned_cols=232 Identities=13% Similarity=0.064 Sum_probs=124.6
Q ss_pred cchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhcc-CccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCC
Q 000934 18 KDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG 96 (1219)
Q Consensus 18 ~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~-D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~ 96 (1219)
+|.|....+-|...-. .....+++..+...+. +.|+.+...+.++++.-..++..+....+++.+...+.+.
T Consensus 1 ad~r~~~~~~L~~l~~-------~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPS-------SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred CcHHHHHHHHHHhCCC-------cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCC
Confidence 4667665555532211 1256788999998888 5678889999999998777775555678888888888888
Q ss_pred CcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhcc--CCChhHH----HHHHHHHHHHHH-Hhh--------
Q 000934 97 KDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLK--DMNTEIR----CECLDILCDVLH-KFG-------- 161 (1219)
Q Consensus 97 ~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~--~~~~~v~----~~al~~L~~l~~-~~g-------- 161 (1219)
+...|.+-..+++.++...+. .........++|.|.+.++.. ++..... ..++-++. +.. .+.
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~ 151 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPN-SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNIS 151 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccC-chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhh
Confidence 777899999998888761111 223345666777777655431 1111111 12222222 000 000
Q ss_pred -h--hhhHhHH-HHHHHHhhh-hcCChHHHHHHHHHHHH-HHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 000934 162 -N--LMSNDHE-RLLSALLPQ-LSANQASVRKKSVSCIA-SLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVG 235 (1219)
Q Consensus 162 -~--~l~~~~~-~l~~~ll~~-l~~~~~~vrk~a~~~l~-~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~ 235 (1219)
. .+.+.-. -+-+.+... ...++...--+++..+. .+.....++....+-..++..+-+++....+|+.+++++.
T Consensus 152 ~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~ 231 (339)
T PF12074_consen 152 FWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALK 231 (339)
T ss_pred hhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 0 0000000 011122233 22333333333443332 2222222222233444455555555323478888899998
Q ss_pred HHHHHhhhhhccchhhhHHHHHH
Q 000934 236 ALSRAVGYRFGPHLGDTVPVLID 258 (1219)
Q Consensus 236 ~l~~~~~~~~~~~l~~iip~ll~ 258 (1219)
.+....|..++..+-.=+...+.
T Consensus 232 ~l~~~~~~~l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 232 KLYASNPELLSKSLISGLWKWLS 254 (339)
T ss_pred HHHHhChHHHHHHHHHHHHHHHH
Confidence 88888877666655333333333
No 217
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.28 E-value=46 Score=41.79 Aligned_cols=123 Identities=24% Similarity=0.274 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhh----------hccchhhhHHHHHHhhhcc-CCCChHHHHHHHHHHHHHHHhCchhhccc
Q 000934 224 PEMIRTNIQMVGALSRAVGYR----------FGPHLGDTVPVLIDYCTSA-SENDEELREYSLQALESFLLRCPRDISSY 292 (1219)
Q Consensus 224 ~~~~~~~i~~l~~l~~~~~~~----------~~~~l~~iip~ll~~~~~~-~~~d~elre~al~~l~~l~~~~~~~~~~~ 292 (1219)
...+.+++-++|++++..-.. .......+++.+.+.+... +..|.+-+-.++.||+++-
T Consensus 449 ~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g---------- 518 (618)
T PF01347_consen 449 PYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG---------- 518 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT----------
T ss_pred hhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC----------
Confidence 368889999999999865433 3444556666666555521 1356677788899998762
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 000934 293 CDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEAC 372 (1219)
Q Consensus 293 l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~ 372 (1219)
++.+++.+.+++..+ .+.+-.+|-+|..+|..+....|+. ..+.++
T Consensus 519 ~~~~i~~l~~~i~~~-------------------------------~~~~~~~R~~Ai~Alr~~~~~~~~~---v~~~l~ 564 (618)
T PF01347_consen 519 HPESIPVLLPYIEGK-------------------------------EEVPHFIRVAAIQALRRLAKHCPEK---VREILL 564 (618)
T ss_dssp -GGGHHHHHTTSTTS-------------------------------S-S-HHHHHHHHHTTTTGGGT-HHH---HHHHHH
T ss_pred CchhhHHHHhHhhhc-------------------------------cccchHHHHHHHHHHHHHhhcCcHH---HHHHHH
Confidence 134566666665310 0234479999999999887767643 233334
Q ss_pred HHHHhhhcccchhHHHHHHH
Q 000934 373 PKLIDRFKEREENVKMDVFN 392 (1219)
Q Consensus 373 p~Li~~~~d~~~~Vr~~~~~ 392 (1219)
|.+.+. ..+.+||.+|+.
T Consensus 565 ~I~~n~--~e~~EvRiaA~~ 582 (618)
T PF01347_consen 565 PIFMNT--TEDPEVRIAAYL 582 (618)
T ss_dssp HHHH-T--TS-HHHHHHHHH
T ss_pred HHhcCC--CCChhHHHHHHH
Confidence 443221 223558877653
No 218
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.01 E-value=3.1 Score=48.07 Aligned_cols=151 Identities=16% Similarity=0.103 Sum_probs=100.7
Q ss_pred HHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHH-hcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHh
Q 000934 51 VVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIK-LLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLT 129 (1219)
Q Consensus 51 ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~-~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~ 129 (1219)
+-+++.|.++-.|...+-.++.---..+. ..++..|+.. +.++++++|..|.+||+-+|-.-+ ..+
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTgn---~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~----------~~l 587 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTGN---LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR----------DLL 587 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCCc---chhHhhhheeecccCchHHHHHHHHheeeeEecCc----------chh
Confidence 33566788888888777666533211111 3556666665 567788899999999987764322 233
Q ss_pred HHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHH---H
Q 000934 130 PQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL---L 206 (1219)
Q Consensus 130 p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~---~ 206 (1219)
|..++-+.+.. +..||.+..-+|+-.+...|.. ...+.+-+...|+..-||..|+-+++.+...+.+++ +
T Consensus 588 v~tvelLs~sh-N~hVR~g~AvaLGiacag~G~~------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v 660 (926)
T COG5116 588 VGTVELLSESH-NFHVRAGVAVALGIACAGTGDK------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV 660 (926)
T ss_pred hHHHHHhhhcc-chhhhhhhHHHhhhhhcCCccH------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH
Confidence 44445454443 6889999888898777666653 234444455667777899999999999988877764 5
Q ss_pred HHHHHHHHHHhhcCC
Q 000934 207 AKATIEVVRNLRSKG 221 (1219)
Q Consensus 207 ~~l~~~ll~~l~~~~ 221 (1219)
..+..++.+.+.+..
T Consensus 661 ~~I~k~f~~vI~~Kh 675 (926)
T COG5116 661 KRIIKKFNRVIVDKH 675 (926)
T ss_pred HHHHHHHHHHHhhhh
Confidence 667777777665433
No 219
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.00 E-value=2.8 Score=52.06 Aligned_cols=159 Identities=19% Similarity=0.167 Sum_probs=103.4
Q ss_pred CCCcchhhhhHHHHHHHhccccCCCCh--HHHHHHHHHHHHhccCc-cchhhHHHHHHHHHHhhhcChhhHH----HHHH
Q 000934 15 GKDKDFRYMATSDLLNELNKESFKADA--DLEVKLSNIVVQQLDDV-AGDVSGLAVKCLAPLVKKVSEPRVV----EMTD 87 (1219)
Q Consensus 15 ~~d~d~R~mAl~dL~~~l~~~~~~~~~--~~~~~v~~~ll~~L~D~-~~eVq~~A~k~l~~l~~~~~~~~~~----~l~~ 87 (1219)
+.+|.-|.||..=|...... |+... -....++...+..|+|+ .+-.|.=.+-|||.|+....+..|. .-.+
T Consensus 568 ~~~~EqrtmaAFVLAviv~n--f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 568 AIPPEQRTMAAFVLAVIVRN--FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE 645 (1387)
T ss_pred CCCHHHHHHHHHHHHHHHcc--cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence 34567899999888766654 44332 22345788889999995 7888999999999999887776663 4567
Q ss_pred HHHHHhcCCCcchhhHHHHHHHHHHhhcCCh-hhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhH
Q 000934 88 KLCIKLLNGKDQHRDIASIALKTIIAEVTTS-SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN 166 (1219)
Q Consensus 88 ~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~-~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~ 166 (1219)
+|+..+.++-.++|..|..||++++.+.... +-...+++..+- +.+ .+++ + ..
T Consensus 646 kL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~-----l~~----~~~~--------------~---E~ 699 (1387)
T KOG1517|consen 646 KLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEID-----LDD----ERTS--------------I---ED 699 (1387)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhc-----chh----hhhh--------------H---HH
Confidence 8888888888899999999999999864320 001111111111 000 0000 0 01
Q ss_pred hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhC
Q 000934 167 DHERLLSALLPQLSANQASVRKKSVSCIASLASSL 201 (1219)
Q Consensus 167 ~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~ 201 (1219)
.....+-.++..+++.++.||+.-..+|+.++.-.
T Consensus 700 ~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 700 LIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred HHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 11111234567778888999999999998887543
No 220
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.92 E-value=15 Score=48.31 Aligned_cols=87 Identities=22% Similarity=0.222 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccC
Q 000934 185 SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSAS 264 (1219)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~ 264 (1219)
.|-+..+.|++..+...+++ |..+...++...++.. ...|-.++..+..+....|....+++++++|++.+.++
T Consensus 1519 ~v~~~li~~i~~~~~a~~~d-~~pl~~k~l~~trss~--~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~E--- 1592 (1621)
T KOG1837|consen 1519 IVSKLLIAEIASDSVADKDD-LKPLNQKILKKTRSSS--RKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELME--- 1592 (1621)
T ss_pred HHHHHHHHHHHhhccCChhh-hHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHh---
Confidence 47778888888888888777 7777776666655443 25677789999999999999999999999999999997
Q ss_pred CCChHHHHHHHHH
Q 000934 265 ENDEELREYSLQA 277 (1219)
Q Consensus 265 ~~d~elre~al~~ 277 (1219)
|+++++...|-..
T Consensus 1593 D~~~~Ve~~~q~l 1605 (1621)
T KOG1837|consen 1593 DEDDEVECLCQKL 1605 (1621)
T ss_pred hhHHHHHHHHHHH
Confidence 5777776555443
No 221
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.68 E-value=22 Score=47.11 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=76.0
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH---HHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccc
Q 000934 172 LSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEV---VRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPH 248 (1219)
Q Consensus 172 ~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l---l~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~ 248 (1219)
+..+++.|.-.++..|.+|.+.++.+......+....++|+. ...+..... ..+|....+.+..+...+.+++.||
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 444555565667889999999999998776555444444433 333333332 4789999999999999999999999
Q ss_pred hhhhHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 000934 249 LGDTVPVLIDYCTSASENDEELREYSLQALES 280 (1219)
Q Consensus 249 l~~iip~ll~~~~~~~~~d~elre~al~~l~~ 280 (1219)
+..+||..+.+.- |.+..+.++|..++..
T Consensus 122 LK~li~~wl~~~~---d~~~~vs~aa~~sf~~ 150 (1312)
T KOG0803|consen 122 LKSLIPPWLGGQF---DLDYPVSEAAKASFKD 150 (1312)
T ss_pred HHhhhhhhhheec---ccchHHHHHHHHHHHh
Confidence 9999999987665 4666777777666644
No 222
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.53 E-value=0.45 Score=44.02 Aligned_cols=68 Identities=10% Similarity=0.110 Sum_probs=47.2
Q ss_pred HHHHHHHh-cCCCcchhhhhHHHHHHHhccccCCCChHHH--HHHHHHHHHhccCccchhhHHHHHHHHHHhh
Q 000934 6 MAAILEKI-TGKDKDFRYMATSDLLNELNKESFKADADLE--VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK 75 (1219)
Q Consensus 6 l~~ll~~~-~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~--~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~ 75 (1219)
+..|+.-+ .+.||..-..|++|+-..+...+- .-... -.+...++++++++|++||..|.+|+..++.
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~--gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN--GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG--GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChh--HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33344444 445888888999999877765221 11222 2366788899999999999999999998874
No 223
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=89.27 E-value=5.4 Score=44.99 Aligned_cols=168 Identities=12% Similarity=0.247 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhh----hcccchhHH-HHHHHHHHHHHHHhcccCccccCCCCCChhH
Q 000934 344 KVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDR----FKEREENVK-MDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418 (1219)
Q Consensus 344 kVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~----~~d~~~~Vr-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 418 (1219)
.||+.-.+++.+.+...++. ..+.+.++|.|++. ++...+..| .+++.++.++++..+... .+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~---------~~-- 109 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELI---------QP-- 109 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGC---------CC--
T ss_pred HHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhh---------hh--
Confidence 46777888898988877632 23555556655542 232333344 367888888888776310 01
Q ss_pred HHHHHHHHHHHHHHHHhcc---cCccchhhHHHHHHHHHHHhcchhhh----hhhhhhhHhHHHhhcCCCCcchhHHHHH
Q 000934 419 LLKQEVSKIVKSINRQLRE---KSIKTKQVGAFSVLRELVVVLPDCLA----DHIGSLIPGIEKSLNDKSSTSNLKIEAL 491 (1219)
Q Consensus 419 ~L~~~~p~lv~~l~~~L~~---~~~~~r~~~~~~~L~~L~~~~~~~l~----~~~~~l~~~l~~~l~d~~~~~~~~~~al 491 (1219)
.+...+..+........++ .-|+.| ..-+.+++.+....+..+. +.+..++..+.-++++.. .++...++
T Consensus 110 ~v~~I~~~vf~~Tl~MI~~d~~~yPe~r-~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~--~~I~~~~L 186 (319)
T PF08767_consen 110 QVPQILEAVFECTLPMINKDFEEYPEHR-VNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTN--REISETGL 186 (319)
T ss_dssp CHHHHHHHHHHHHHHHHSSTSSSSHHHH-HHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSS--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhChHHH-HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCc--HHHHHHHH
Confidence 1222233333334444443 236788 8889999999988766553 367888888888888764 67888888
Q ss_pred HHHHHHhccCCC---C----CchhhhhhhHHHHHHHhcCCch
Q 000934 492 TFTRLVLSSHSP---P----VFHPYIKALSSPVLAAVGERYY 526 (1219)
Q Consensus 492 ~~l~~l~~~~~~---~----~~~~~l~~i~p~l~~~l~d~~~ 526 (1219)
..+..+++.... + -++.|.-.++..+...+.|+..
T Consensus 187 ~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~H 228 (319)
T PF08767_consen 187 NILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDH 228 (319)
T ss_dssp HHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 888888765332 1 1233555666677777766654
No 224
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=88.97 E-value=38 Score=36.82 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=68.4
Q ss_pred hcCCchHHH---HHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCC-CCCcch---HH
Q 000934 612 MGNEITRLT---AVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGD-KIGASA---YE 684 (1219)
Q Consensus 612 L~~e~~r~~---a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~-~l~~~~---~~ 684 (1219)
+.||..|.. .+.++..+.....+ ....++.++.|...|.-.+..++..++..++.|++++.. +++.-. -.
T Consensus 51 feNenhrekttlcVscLERLfkakeg---ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNa 127 (524)
T KOG4413|consen 51 FENENHREKTTLCVSCLERLFKAKEG---AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNA 127 (524)
T ss_pred cccccccchhhhHHHHHHHHHhhccc---hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhh
Confidence 346666655 57777777644333 445677888888888888899999999999999988753 122100 12
Q ss_pred HHHHHHhhhcCCCChhhhHHHHHHHHHHhh
Q 000934 685 VIIVELSTLISDSDLHMTALALELCCTLMA 714 (1219)
Q Consensus 685 ~il~~l~~~l~~~d~~~~~~al~~l~~l~~ 714 (1219)
.+++.+..-+-..|..+..++.+.+..+..
T Consensus 128 eilklildcIggeddeVAkAAiesikrial 157 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIAL 157 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 344444555567788888899998888875
No 225
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.90 E-value=1.5e+02 Score=43.41 Aligned_cols=282 Identities=14% Similarity=0.123 Sum_probs=133.7
Q ss_pred HHHHHHHHhcccCccchhhHHHHHHHHHHHh----cchh----hhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHh
Q 000934 427 IVKSINRQLREKSIKTKQVGAFSVLRELVVV----LPDC----LADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVL 498 (1219)
Q Consensus 427 lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~----~~~~----l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~ 498 (1219)
.++++...+...+..++ .++...+..+-.. .+.. --+-++.+++.+.....++. .+-|......+++++
T Consensus 985 ~ldal~~~l~~~~~~~~-~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~--wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMR-PAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDST--WYAKDGGVNGIKCLI 1061 (3550)
T ss_pred HHHHHHHHHhccchhhh-hhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHh--HHHHcCCCceeeeeh
Confidence 34666666665555555 5555555544332 2221 12344555555555444432 333444444455555
Q ss_pred ccCCCCCchhhhhhhHHHHHHHhcCCchHHHH----HHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCC
Q 000934 499 SSHSPPVFHPYIKALSSPVLAAVGERYYKVTA----EALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQ 574 (1219)
Q Consensus 499 ~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~----~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~ 574 (1219)
+..+...+..+...++.++...+.|.-.++.. .+-.++-.+........ .....-......++..+..-+. +.
T Consensus 1062 ~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~-~~~~~~~~~~~~~~~~lv~eL~--np 1138 (3550)
T KOG0889|consen 1062 ESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDE-LAEEERAKSAMNVFSPLVLELF--NP 1138 (3550)
T ss_pred hhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHc--CC
Confidence 55432222234455556666566554333333 33344444433321110 0000111222333333333333 34
Q ss_pred CHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHH-HhhcCC---chHHHH---HHHHHHHh-cCCCCCchhHHHHHHHH
Q 000934 575 DQEVKECAISCMGLVISTFGDNLGAELPACLPVLV-DRMGNE---ITRLTA---VKAFAVIA-ASPLHIDLTCVLEHVIA 646 (1219)
Q Consensus 575 d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~-~~L~~e---~~r~~a---~~al~~i~-~s~~~~~~~~~l~~~l~ 646 (1219)
...||+.+..++..+....|..+...+.+.-..++ ...+.+ ..+... +.++.-++ .++..-++.+-+..+..
T Consensus 1139 N~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~ 1218 (3550)
T KOG0889|consen 1139 NSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKR 1218 (3550)
T ss_pred chHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHH
Confidence 56899999999999998886655443443333331 111111 122233 33333333 33333333322221111
Q ss_pred HHHHH----------HH-----Hhh---hHHHHHHHHHHHHHHHHhCCCCC--cchHHHHHHHHhhhcCCCChhhhHHHH
Q 000934 647 ELTAF----------LR-----KAN---RALRQATLGTMNSLVVAYGDKIG--ASAYEVIIVELSTLISDSDLHMTALAL 706 (1219)
Q Consensus 647 ~L~~~----------L~-----~~~---~~lr~~al~~L~~l~~~~~~~l~--~~~~~~il~~l~~~l~~~d~~~~~~al 706 (1219)
.+... +. |.. ..+|.++++++........-..+ ....+.++..+...+..+...+.+.+.
T Consensus 1219 ~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~ 1298 (3550)
T KOG0889|consen 1219 FLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVAL 1298 (3550)
T ss_pred HHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHH
Confidence 11111 11 111 23688888887776655433211 234567777777777777777777787
Q ss_pred HHHHHHhh
Q 000934 707 ELCCTLMA 714 (1219)
Q Consensus 707 ~~l~~l~~ 714 (1219)
..+.....
T Consensus 1299 ~~l~~v~~ 1306 (3550)
T KOG0889|consen 1299 EGLRKVLA 1306 (3550)
T ss_pred HHHHhhhh
Confidence 77777665
No 226
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.75 E-value=64 Score=39.10 Aligned_cols=272 Identities=14% Similarity=0.153 Sum_probs=141.7
Q ss_pred cccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcc
Q 000934 380 KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLP 459 (1219)
Q Consensus 380 ~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~ 459 (1219)
.+...-||..+.-|+-.+.+.... ... ...-...+...|.|.+..+- .++.+++..++...|
T Consensus 158 ~~~~~~vkqkaALclL~L~r~spD---------------l~~--~~~W~~riv~LL~D~~~gv~-ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 158 GSSMDYVKQKAALCLLRLFRKSPD---------------LVN--PGEWAQRIVHLLDDQHMGVV-TAATSLIEALVKKNP 219 (938)
T ss_pred CcchHHHHHHHHHHHHHHHhcCcc---------------ccC--hhhHHHHHHHHhCcccccee-eehHHHHHHHHHcCC
Confidence 345577999988899999886421 000 11223556677888877777 778888888888877
Q ss_pred hhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHh-cCCchHHHHHHHHHHHH
Q 000934 460 DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAV-GERYYKVTAEALRVCGE 538 (1219)
Q Consensus 460 ~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l-~d~~~~v~~~al~~l~~ 538 (1219)
......++.-+..+.+......++ + .+.. -...-.||+.-=+-.++... ...++..+..-..+++.
T Consensus 220 ~~yk~~~~~avs~L~riv~~~~t~--~-qdYT----------yy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~ 286 (938)
T KOG1077|consen 220 ESYKTCLPLAVSRLSRIVVVVGTS--L-QDYT----------YYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLER 286 (938)
T ss_pred HHHhhhHHHHHHHHHHHHhhcccc--h-hhce----------eecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHH
Confidence 766555555454444433322110 0 0000 00011123222111111111 11233455556666666
Q ss_pred HHHhccCCccCCCCCCc--ccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCCc
Q 000934 539 LVRVLRPSVEGLGFDFK--PYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEI 616 (1219)
Q Consensus 539 l~~~l~~~~~~~~~~~~--~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~ 616 (1219)
+....+.+.. .++.. .--..++-..+.....-|...+.-.+|...+|.++.+-.. .
T Consensus 287 iLnk~~~~~~--~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~--------------------N 344 (938)
T KOG1077|consen 287 ILNKAQEPPK--SKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRET--------------------N 344 (938)
T ss_pred HHhccccCcc--ccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccc--------------------c
Confidence 6654332110 00000 0011111111222222344566666666666666654322 2
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcC
Q 000934 617 TRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLR-KANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLIS 695 (1219)
Q Consensus 617 ~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~-~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~ 695 (1219)
.|--|+.....++.+.... ..+..-...+...|+ ..|-++|+.++..|-.+... .....|+.++++.+.
T Consensus 345 iRYLaLEsm~~L~ss~~s~---davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~-------~Nak~IV~elLqYL~ 414 (938)
T KOG1077|consen 345 IRYLALESMCKLASSEFSI---DAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV-------SNAKQIVAELLQYLE 414 (938)
T ss_pred chhhhHHHHHHHHhccchH---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch-------hhHHHHHHHHHHHHh
Confidence 3555566666666553221 222222333444555 56778999999999888754 236789999999998
Q ss_pred CCChhhhHHHHHHHHHHhh
Q 000934 696 DSDLHMTALALELCCTLMA 714 (1219)
Q Consensus 696 ~~d~~~~~~al~~l~~l~~ 714 (1219)
..|..+++-..--.+-+.+
T Consensus 415 tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 415 TADYSIREEIVLKVAILAE 433 (938)
T ss_pred hcchHHHHHHHHHHHHHHH
Confidence 8999888755444444444
No 227
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.41 E-value=47 Score=43.44 Aligned_cols=226 Identities=15% Similarity=0.130 Sum_probs=126.8
Q ss_pred HhccCccchhhHHHHHHHHHHhhhcChh---hHHHHHHHHHHHhcCCCcchh---hHHHHHHHHHHhhcCChhhhHHHHH
Q 000934 53 QQLDDVAGDVSGLAVKCLAPLVKKVSEP---RVVEMTDKLCIKLLNGKDQHR---DIASIALKTIIAEVTTSSLAQSIHT 126 (1219)
Q Consensus 53 ~~L~D~~~eVq~~A~k~l~~l~~~~~~~---~~~~l~~~L~~~~~~~~~~~r---~~a~~aL~~~i~~~~~~~~~~~~~~ 126 (1219)
.....+..|||-...+|+-.+....++. .|..+.+-|-.....+.+... ..+-.+||-++.++=. .+-.....
T Consensus 849 ~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLq-SLp~sci~ 927 (1610)
T KOG1848|consen 849 SDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQ-SLPTSCIL 927 (1610)
T ss_pred HHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchh-cCChHHHH
Confidence 3344677899999999999999876652 244444444433322222222 3455567766653321 22233455
Q ss_pred hHhHHHHHhhhccCCChhHHHHH---HHHHHHHHHH----hhhhhh--------------------HhHHHHHHHHhhhh
Q 000934 127 SLTPQLTKGITLKDMNTEIRCEC---LDILCDVLHK----FGNLMS--------------------NDHERLLSALLPQL 179 (1219)
Q Consensus 127 ~l~p~L~~~l~~~~~~~~v~~~a---l~~L~~l~~~----~g~~l~--------------------~~~~~l~~~ll~~l 179 (1219)
.++..+.....+.. +-++...| +..++|.+.+ .|+... .-+-.++..+....
T Consensus 928 ~lidtl~~fs~Qkt-dlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~ 1006 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKT-DLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLC 1006 (1610)
T ss_pred HHHHHHHHHHhhhc-cccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHh
Confidence 56666655544432 44554444 4567887776 121111 11345566666777
Q ss_pred cCChHHHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHhhc-------CCCCh-----HHHHHHHHHHHHHHHHhhh
Q 000934 180 SANQASVRKKSVSCIASLAS----SLSDDLLAKATIEVVRNLRS-------KGAKP-----EMIRTNIQMVGALSRAVGY 243 (1219)
Q Consensus 180 ~~~~~~vrk~a~~~l~~l~~----~~~~~~~~~l~~~ll~~l~~-------~~~~~-----~~~~~~i~~l~~l~~~~~~ 243 (1219)
.|++..||+.|++.+=.+.. .++...|+.+.-.++..+-+ ..|+. +--++.+.+++.|++-.+.
T Consensus 1007 ~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e 1086 (1610)
T KOG1848|consen 1007 EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSE 1086 (1610)
T ss_pred ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHH
Confidence 88899999999998866543 45555555443333333222 11211 2235788899999987765
Q ss_pred hhccc---------hhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHH
Q 000934 244 RFGPH---------LGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1219)
Q Consensus 244 ~~~~~---------l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~ 283 (1219)
.|.-. ...+..++..... +...++.-+++.+++.++.
T Consensus 1087 ~fk~llnln~f~~vwe~ll~flkrl~s---~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1087 NFKLLLNLNGFLDVWEELLQFLKRLHS---DISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHh---cCChHhHHHHHHHHHHHHH
Confidence 44332 2223444443333 5678888888888877644
No 228
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=88.34 E-value=58 Score=42.00 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=32.7
Q ss_pred hhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcc
Q 000934 249 LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLS 305 (1219)
Q Consensus 249 l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~ 305 (1219)
+.-++..++..+. ....-+|..+.++|+.|+.... +.-+..++..+.
T Consensus 587 ~~vlveiLLslls---~~s~llR~~~~~vf~~~~~~~t-------~~~l~~ll~vl~ 633 (784)
T PF04931_consen 587 SEVLVEILLSLLS---QPSALLRKVSEQVFEAFCPHLT-------ESGLQLLLDVLD 633 (784)
T ss_pred HHHHHHHHHHHHh---CcchHHHHHHHHHHHHHHhhcC-------HHHHHHHHHHhc
Confidence 5677888888887 3567799999999998875433 334445555554
No 229
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.08 E-value=67 Score=39.90 Aligned_cols=145 Identities=12% Similarity=0.087 Sum_probs=81.1
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhh--------hHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 000934 142 NTEIRCECLDILCDVLHKFGNLM--------SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEV 213 (1219)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l--------~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l 213 (1219)
++.++..++-.++.++.+....- ..+.+.+...+-...+..+...+-..+.+||+++.-. .+..+.+.+
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~---~i~~l~~~l 486 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS---SIKVLEPYL 486 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh---HHHHHHHhc
Confidence 46788889999999998654322 1223333333333333334445666788888776532 222233333
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccH
Q 000934 214 VRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC 293 (1219)
Q Consensus 214 l~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l 293 (1219)
. .+......+|..+++++..++...|.... +.++....+. .++.|+|-+|+.. ++...|.
T Consensus 487 ~---~~~~~~~~iR~~Av~Alr~~a~~~p~~v~-------~~l~~i~~n~-~e~~EvRiaA~~~---lm~t~P~------ 546 (574)
T smart00638 487 E---GAEPLSTFIRLAAILALRNLAKRDPRKVQ-------EVLLPIYLNR-AEPPEVRMAAVLV---LMETKPS------ 546 (574)
T ss_pred C---CCCCCCHHHHHHHHHHHHHHHHhCchHHH-------HHHHHHHcCC-CCChHHHHHHHHH---HHhcCCC------
Confidence 2 12223346888999999988887776533 3333333332 5788999776543 3444353
Q ss_pred HHHHHHHHHhcccCCC
Q 000934 294 DEILHLTLEYLSYDPN 309 (1219)
Q Consensus 294 ~~ii~~~l~~l~~dpn 309 (1219)
...+..+...+..+||
T Consensus 547 ~~~l~~ia~~l~~E~~ 562 (574)
T smart00638 547 VALLQRIAELLNKEPN 562 (574)
T ss_pred HHHHHHHHHHHhhcCc
Confidence 2234444455544443
No 230
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=87.98 E-value=1.7 Score=38.61 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=43.3
Q ss_pred cccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccc--hhHHHHHHHHHHHH
Q 000934 340 DASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKERE--ENVKMDVFNTFIEL 397 (1219)
Q Consensus 340 D~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~--~~Vr~~~~~~l~~l 397 (1219)
|..|.+|.-|++++..++..+.+....+...+.-.+.+.|.|+. ..+...++.++..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 34699999999999999999886666666677777777776543 44666666666665
No 231
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=87.84 E-value=26 Score=40.40 Aligned_cols=209 Identities=19% Similarity=0.204 Sum_probs=122.9
Q ss_pred hcCCCchhHhHHHHHHHHhhhh----------cCcccchHHHHHHhccccc---hhHHHHHHHHHHHhhccccchhhhhH
Q 000934 861 SFQSPFEEIKSAASYALGNIAV----------GNLSKFLPFILDQIDNQQK---KQYLLLHSLKEVIVRQSVDKAEFQDS 927 (1219)
Q Consensus 861 ~l~~~~e~vR~aAa~aLG~l~~----------~~~~~~lp~il~~l~~~~~---~~~~~l~alkeii~~~~~~~~~~~~~ 927 (1219)
.+-+++.+||.++...+=-+.. -++.. +|...+..+.+ .|..++.=++.++...+. ...+
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~---~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~--~~~~-- 105 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDI---FIIRSLDRDNKNDVEREQALKLIRAFLEIKKG--PKEI-- 105 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCch---hhHhhhcccCCChHHHHHHHHHHHHHHHhcCC--cccC--
Confidence 3434458899888866633322 12222 23444444332 244445555555554210 1112
Q ss_pred HHHHHHHHHHhhccCCccchHhHHHHHHhhhhccCccc-----chHHHHHHhcCCCchhhHHHHhhhHhhhccCCc-h--
Q 000934 928 SVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAK-----LVPALKVRTTSSAAFTRATVVIAIKYSIVERPE-K-- 999 (1219)
Q Consensus 928 ~~~~i~~~L~~~~~~~~e~~r~~~ae~LG~l~~~~p~~-----~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~-~-- 999 (1219)
-..+...+....+++++..|+.+.|.|..++..+|+- -+..|.+.+.+.+......++.++=|+++.... .
T Consensus 106 -~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl 184 (371)
T PF14664_consen 106 -PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYL 184 (371)
T ss_pred -CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhh
Confidence 2445566666667788899999999999999999983 244555555554445677788888888876532 0
Q ss_pred -hhhhhhHhHHHHHhh----ccCCC-hHHHHHHHHHHHHHHhcCchhhhchhh--hhhHHHHHhhhcccccceeeeccCc
Q 000934 1000 -IDEIIFPEISSFLML----IKDQD-RHVRRAAVLALSTFAHNKPNLIKGLLP--ELLPLLYDQTIVKKELIRTVDLGPF 1071 (1219)
Q Consensus 1000 -~~~~l~~~i~~~l~~----l~D~~-~~vR~~a~~~L~~~~~~~p~~i~~~l~--~llp~l~~~~~~~~elir~v~mgpf 1071 (1219)
.+-.+..++.+|... ..+.. .+.-+.+..++.++..+-|.++.=-.+ +-+..|.+-...
T Consensus 185 ~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~------------- 251 (371)
T PF14664_consen 185 RPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRL------------- 251 (371)
T ss_pred cCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcC-------------
Confidence 011244555555553 22222 145577777788888888887632222 344445544332
Q ss_pred eeecccChhHHHHHHHHHHHHHhh
Q 000934 1072 KHTVDDGLELRKAAFECVDTLLDS 1095 (1219)
Q Consensus 1072 kh~~Ddgle~Rk~a~e~l~~ll~~ 1095 (1219)
-..++|+..++.+|.++..
T Consensus 252 -----p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 252 -----PNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred -----CCHHHHHHHHHHHHHHHCC
Confidence 2356999999999999875
No 232
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.63 E-value=1.7e+02 Score=42.74 Aligned_cols=160 Identities=18% Similarity=0.261 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhh----hhhhhhHhHHHhhcCC---CCcchhHHHHH
Q 000934 419 LLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLAD----HIGSLIPGIEKSLNDK---SSTSNLKIEAL 491 (1219)
Q Consensus 419 ~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~----~~~~l~~~l~~~l~d~---~~~~~~~~~al 491 (1219)
.+..+++.|+....+.......+ ..-+.+|.++.+.++|+..+ .+-+++|.+.+.++.- .....+|
T Consensus 626 vl~phv~~Ii~~smela~~a~ep---lnYf~LLraLFRsigGg~~d~ly~e~lplL~~lLe~ln~l~~~~~s~~mk---- 698 (3550)
T KOG0889|consen 626 VLRPHVHDIISTSMELATTAPEP---LNYFQLLRALFRSIGGGAFDSLYREVLPLLPNLLEILNHLLSSFHSQGMK---- 698 (3550)
T ss_pred hcccchhHHHHHHHHHHhcCCcc---hhHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHhhccCccchH----
Confidence 67788999988766665432221 45678889999888776433 3334455555554321 1112222
Q ss_pred HHHHHHhccCC--CCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHh
Q 000934 492 TFTRLVLSSHS--PPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRL 569 (1219)
Q Consensus 492 ~~l~~l~~~~~--~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l 569 (1219)
.+...++-+.+ -..+.||++.++.+++.+++- .+++.+.+|+++.-.+..+.|+ .+.|.+++..+.+++.|
T Consensus 699 dLfvELclTvPvRLS~Llpylp~LM~PLv~aLkg-s~~lvsQgLRtlelcvDnltPe------fL~~~mepv~~~lmqaL 771 (3550)
T KOG0889|consen 699 DLFVELCLTLPVRLSSLLPYLPLLMKPLVFALKG-SPELVSQGLRTLELCVDNLTPE------FLDPIMEPVRDDLMQAL 771 (3550)
T ss_pred HHHHHHHHhhhHHHHHhhhhhhhhhhHHHHHhcC-CHHHHHHHHhHHHHHHhcCChH------hhhHHHHHHHHHHHHHH
Confidence 12222222211 135779999999999999975 4789999999999998888774 34454554444444444
Q ss_pred hhcCC---CHHHHHHHHHHHHHHHHh
Q 000934 570 TNQDQ---DQEVKECAISCMGLVIST 592 (1219)
Q Consensus 570 ~~~d~---d~~vr~~Ai~alg~l~~~ 592 (1219)
-+.-. +..+-..|+.-+|-+-++
T Consensus 772 w~~l~~~~~~s~s~~a~rILGKlgG~ 797 (3550)
T KOG0889|consen 772 WSHLRPVPNYSYSHRALRILGKLGGR 797 (3550)
T ss_pred HHhccCCCCchHHHHHHHHHHhhcCc
Confidence 32211 345667788888766443
No 233
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=87.54 E-value=10 Score=43.95 Aligned_cols=97 Identities=26% Similarity=0.341 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCchhhhchhhhhhHHHHHhhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhhhcCCCchhch
Q 000934 1027 VLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFI 1106 (1219)
Q Consensus 1027 ~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~elir~v~mgpfkh~~Ddgle~Rk~a~e~l~~ll~~~~~~~~~~~~~ 1106 (1219)
+..+..++..+|+.+.||+|.++|.|.+-- + ....++.-+|.|+..- .--.+..|+
T Consensus 183 LrvlS~Vye~~P~~i~PhlP~l~~lL~q~~---p--------------------~~~~ll~~l~~LI~Qk-~~evL~~ci 238 (851)
T KOG3723|consen 183 LRVLSAVYEKQPQPINPHLPELLALLSQLE---P--------------------EQYHLLRLLHVLIKQK-QLEVLQKCI 238 (851)
T ss_pred HHHHHHHHhcCCCccCcccHHHHHHhcCCC---H--------------------HHHHHHHHHHHHHHhc-cHHHHHHHH
Confidence 455666788999999999999999776411 1 1235555566665431 112355677
Q ss_pred HHHHhcccCC--cchhHhhHHHHHHHHHhhCchhHH---HhHHHhhHHHH
Q 000934 1107 VPYLKSGLED--HYDVKMPCHLILSKLADKCPSAVL---AVLDSLVDPLQ 1151 (1219)
Q Consensus 1107 ~~~~~~gl~D--~~di~~l~~~~l~~l~~~~p~~~~---~~l~~l~~~l~ 1151 (1219)
|.++..+.| +.+|++ .+|-++++..|.... +.|+.+++-..
T Consensus 239 -P~L~g~l~ds~~~~i~~---~Ilk~ia~~~pv~l~~~~E~l~e~~~~~p 284 (851)
T KOG3723|consen 239 -PFLIGHLKDSTHNDIIL---NILKEIAVYEPVALNSFLEMLKEIGERFP 284 (851)
T ss_pred -HHHHHHhccccchhHHH---HHHHHHHhcCccchhhHHHHHHHHHHhCC
Confidence 788899988 455663 456677777776544 55555555443
No 234
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.51 E-value=1.2e+02 Score=40.66 Aligned_cols=253 Identities=16% Similarity=0.153 Sum_probs=137.6
Q ss_pred HHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCch
Q 000934 428 VKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFH 507 (1219)
Q Consensus 428 v~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~ 507 (1219)
+..+...|..+...+. -.+..+-..++...+..+.+.+...+...+ +.+....+.++...-.++..+-... |
T Consensus 183 L~~ll~~lv~~~~~~~-~~a~~la~~li~~~a~~~~~~i~~f~~~~~--~~~~s~~~~~~~~~he~i~~L~~~~-p---- 254 (1266)
T KOG1525|consen 183 LDVLLENLVKPGRDTI-KEADKLASDLIERCADNLEDTIANFLNSCL--TEYKSRQSSLKIKYHELILELWRIA-P---- 254 (1266)
T ss_pred HHHHHHHhccCCCCcc-HHHHHHHHHHHHHhhhhhchhHHHHHHHHH--hhccccccchhhHHHHHHHHHHHhh-H----
Confidence 3444444444444455 555555566666655555444443332221 1122122344444444444443321 1
Q ss_pred hhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Q 000934 508 PYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMG 587 (1219)
Q Consensus 508 ~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg 587 (1219)
.-+-.++|.+..-|....-.+|-+|...++.++..-. ..+..-.+.++...+.++. |...+||..++.+..
T Consensus 255 ~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~-------~~l~~~~~~~~~~fl~r~~--D~~~~vR~~~v~~~~ 325 (1266)
T KOG1525|consen 255 QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD-------SQLSETYDDLWSAFLGRFN--DISVEVRMECVESIK 325 (1266)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch-------hhhcccchHHHHHHHHHhc--cCChhhhhhHHHHhH
Confidence 1355677777777776667889999999999976321 1233556778888888875 777899999999999
Q ss_pred HHHHhhcccccchhhhHHHHHHHhhcCCchHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000934 588 LVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTM 667 (1219)
Q Consensus 588 ~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L 667 (1219)
+++.+..+... -...+-.+..+.-++..|....-++..+.-.... -.+.+.++..+..-++...+.+|..|+.-|
T Consensus 326 ~~l~~~~~~~~--~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~---l~~~~~ll~~~~eR~rDKk~~VR~~Am~~L 400 (1266)
T KOG1525|consen 326 QCLLNNPSIAK--ASTILLALRERDLDEDVRVRTQVVIVACDVMKFK---LVYIPLLLKLVAERLRDKKIKVRKQAMNGL 400 (1266)
T ss_pred HHHhcCchhhh--HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhh---hhhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 88877432111 1111222223333444443332222211111000 233344666777777888889999999999
Q ss_pred HHHHHHh------CCCCCcchHHHHHHHHhhhcCCCChhhh
Q 000934 668 NSLVVAY------GDKIGASAYEVIIVELSTLISDSDLHMT 702 (1219)
Q Consensus 668 ~~l~~~~------~~~l~~~~~~~il~~l~~~l~~~d~~~~ 702 (1219)
..+..++ ++......+..+-..++.++...|...+
T Consensus 401 aqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 401 AQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred HHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH
Confidence 9999862 1111112234445555566655544333
No 235
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=87.50 E-value=26 Score=37.52 Aligned_cols=181 Identities=18% Similarity=0.180 Sum_probs=100.8
Q ss_pred HHHHhhhcChhhHHHHHHHHHHHhcCC-CcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccC----CChh
Q 000934 70 LAPLVKKVSEPRVVEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKD----MNTE 144 (1219)
Q Consensus 70 l~~l~~~~~~~~~~~l~~~L~~~~~~~-~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~----~~~~ 144 (1219)
+.++++++-.+.+.-+.++.++.+.++ +.+.|++|...|+. + +-++.++|-+++.+.++- .+-+
T Consensus 183 ~KplvkHvLsKELq~YF~kvisal~dEs~~~~r~aAl~sLr~---d--------sGlhQLvPYFi~f~~eqit~Nl~nl~ 251 (450)
T COG5095 183 LKPLVKHVLSKELQMYFDKVISALLDESDEQTRDAALESLRN---D--------SGLHQLVPYFIHFFNEQITKNLKNLE 251 (450)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---C--------ccHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 335555555566666677777666544 45678887777763 1 124556666665554311 0223
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhc------CC----hHHHHHHHHHHHHHHHhhCCHHHH---HHHHH
Q 000934 145 IRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLS------AN----QASVRKKSVSCIASLASSLSDDLL---AKATI 211 (1219)
Q Consensus 145 v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~------~~----~~~vrk~a~~~l~~l~~~~~~~~~---~~l~~ 211 (1219)
+-...+.....++.+---.+.||...+++.++.++- +| .-++|+-|...++.....++..+. ..+..
T Consensus 252 ~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtr 331 (450)
T COG5095 252 KLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTR 331 (450)
T ss_pred HHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHH
Confidence 333444555555555444566887777777776652 22 236999999999988888877642 34444
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh-hhccchhhhHHHHHHhhh
Q 000934 212 EVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY-RFGPHLGDTVPVLIDYCT 261 (1219)
Q Consensus 212 ~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~-~~~~~l~~iip~ll~~~~ 261 (1219)
.+++.+-+........-+++..+..+.+..-. -+.|.++.-...+.+.+.
T Consensus 332 TllKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle 382 (450)
T COG5095 332 TLLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLE 382 (450)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHh
Confidence 44555443322223455667777666554322 234444444444444443
No 236
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=87.13 E-value=29 Score=37.74 Aligned_cols=172 Identities=15% Similarity=0.245 Sum_probs=90.6
Q ss_pred cHHHHHHHHHHHHHHHhcCc-------hhh-HHHHHHHHHHHHhhh-cccchhHHHHHHHHHHHHHHHhcccCccccCCC
Q 000934 342 SWKVRRAAAKCLAALIVSRP-------EML-SKLYEEACPKLIDRF-KEREENVKMDVFNTFIELVRQTGNVTKGQIDNN 412 (1219)
Q Consensus 342 swkVR~~Aa~~l~~li~~~~-------~~l-~~~~~~i~p~Li~~~-~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~ 412 (1219)
+|+.=|.+..+++.++...| ..+ .+.+..+...++..+ +=|+..+-..+..+|..+.+..-..+
T Consensus 60 ~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~------- 132 (255)
T PF10350_consen 60 CWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSN------- 132 (255)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCC-------
Confidence 69998999999999985432 111 224445555554443 33555555666777777776543110
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhccc-Cc---cchhhHHH-HHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCc----
Q 000934 413 ELNPRWLLKQEVSKIVKSINRQLREK-SI---KTKQVGAF-SVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSST---- 483 (1219)
Q Consensus 413 ~~~~~~~L~~~~p~lv~~l~~~L~~~-~~---~~r~~~~~-~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~---- 483 (1219)
.+ .+......-++.+...+.++ .. -+|.-+++ .++..+...-|+.-.+.+...+..+++..+.+...
T Consensus 133 --~~--~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~ 208 (255)
T PF10350_consen 133 --NP--ELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDE 208 (255)
T ss_pred --Cc--hHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCccccccc
Confidence 01 22222222334444444443 11 24413444 34455555544432245555566666555544321
Q ss_pred --chhHHHHHHHHHHHhccCC-CCCchhhhhhhHHHHHHHhcCC
Q 000934 484 --SNLKIEALTFTRLVLSSHS-PPVFHPYIKALSSPVLAAVGER 524 (1219)
Q Consensus 484 --~~~~~~al~~l~~l~~~~~-~~~~~~~l~~i~p~l~~~l~d~ 524 (1219)
...++.|+++|+.++.... .+...+|+...+..-+..+.++
T Consensus 209 ~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s~ 252 (255)
T PF10350_consen 209 KSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSSP 252 (255)
T ss_pred ccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 2468889999999987532 2344556666655555555443
No 237
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=86.65 E-value=2.6 Score=41.50 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCC---h--------hh---hHHHHH
Q 000934 61 DVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT---S--------SL---AQSIHT 126 (1219)
Q Consensus 61 eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~---~--------~~---~~~~~~ 126 (1219)
-|+++...++..++.+--++.|+.+++.+.+.+.+ ++.........|+.+.+++.. . .+ ......
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~ 81 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSP 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHH
Confidence 47889999999999887778899999999998866 345566777778877776642 0 00 011123
Q ss_pred hHhHHHHHhhhccCC--ChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHH
Q 000934 127 SLTPQLTKGITLKDM--NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCI 194 (1219)
Q Consensus 127 ~l~p~L~~~l~~~~~--~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l 194 (1219)
.++..+.+.+..... ..++...++.++...++......-. ...+++.++..+.++. .+..|+.||
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~-~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELII-NSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHH-SSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhc-cHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 333333344443221 1566667777777666533222111 1236777777775543 366776664
No 238
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=86.58 E-value=1.9 Score=39.28 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=54.7
Q ss_pred hhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchh-hcccHHHHHHHHHHhccc
Q 000934 242 GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD-ISSYCDEILHLTLEYLSY 306 (1219)
Q Consensus 242 ~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~-~~~~l~~ii~~~l~~l~~ 306 (1219)
|..+.||++.++.++..++.. -.+++|..++..++-++.+||.+ +..+..++++-...++..
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTH---i~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTH---ISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHh---CCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 356789999999999999984 68999999999999999999998 788889999988888764
No 239
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=86.20 E-value=1.1e+02 Score=38.98 Aligned_cols=179 Identities=16% Similarity=0.221 Sum_probs=97.0
Q ss_pred hhhhhHhHHHHHhhccCCChHH--HHHHHHHHHHHHhcCchhhhchhhh--hhHHHHHhhhcccccceeeeccCceeecc
Q 000934 1001 DEIIFPEISSFLMLIKDQDRHV--RRAAVLALSTFAHNKPNLIKGLLPE--LLPLLYDQTIVKKELIRTVDLGPFKHTVD 1076 (1219)
Q Consensus 1001 ~~~l~~~i~~~l~~l~D~~~~v--R~~a~~~L~~~~~~~p~~i~~~l~~--llp~l~~~~~~~~elir~v~mgpfkh~~D 1076 (1219)
..+|..++..+++.+..++++- -..--.++-.+...+|.+. ++++. .+|.+.+....+.
T Consensus 1998 k~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LA-Dqip~LGylPK~~~Am~~~n---------------- 2060 (2235)
T KOG1789|consen 1998 KLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLA-DQLPSLGYLPKFCTAMCLQN---------------- 2060 (2235)
T ss_pred HHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchh-hhCCCccchHHHHHHHHhcC----------------
Confidence 3567777888888777554421 1122222334456677754 22222 4455544322111
Q ss_pred cChhHHHHHHHHHHHHHhh--hhcCCCchhchHHHHhcccCCcchhHhhHHHHHHHHHhhCchhHH-HhHH-HhhHHHHh
Q 000934 1077 DGLELRKAAFECVDTLLDS--CLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVL-AVLD-SLVDPLQK 1152 (1219)
Q Consensus 1077 dgle~Rk~a~e~l~~ll~~--~~~~~~~~~~~~~~~~~gl~D~~di~~l~~~~l~~l~~~~p~~~~-~~l~-~l~~~l~~ 1152 (1219)
-.+-+.|+..+-.|.++ |.+...-.+-++ .+..+++...+---+++-.|.|+..+.-+++. |.|. .|++-|-+
T Consensus 2061 --~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~-~~m~~mkK~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~ 2137 (2235)
T KOG1789|consen 2061 --TSAPRSAIRVLHELSENQFCCDAMAQLPCID-GIMKSMKKQPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQ 2137 (2235)
T ss_pred --CcCcHHHHHHHHHHhhccHHHHHHhccccch-hhHHHHHhcchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHH
Confidence 11226777777777654 432222222332 46677887777667999999999998887766 2221 23333333
Q ss_pred -----hhcccCCcchhhhhhhhHHHHHHHHHHHHHHhhcccC-CCCChhHHHHHHH
Q 000934 1153 -----TINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISG-GDCSMKFKSLMSE 1202 (1219)
Q Consensus 1153 -----~l~~k~k~~~~kqe~e~~~e~~rs~lr~~~~l~~~~~-~~~~~~~~~~~~~ 1202 (1219)
+|+.--+.++.+.++-| ..++..+...-=.+..+ -++++.|..|-++
T Consensus 2138 LLd~~tL~~~~~~aas~A~Iv~---aLk~~~~~l~vg~kV~EILd~S~VWSAfKDQ 2190 (2235)
T KOG1789|consen 2138 LLDSSTLNGVSNGAAARAEIVD---ALKSAILDLKVGQKVAEILDKSPVWSAFKDQ 2190 (2235)
T ss_pred HhccccccccCchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHhhhc
Confidence 35555677777777755 33343333322222222 2567788888765
No 240
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=85.99 E-value=43 Score=37.78 Aligned_cols=117 Identities=21% Similarity=0.192 Sum_probs=72.1
Q ss_pred ChhHHHHHHHHHHHHHHHhhhh---hhHh----HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHH---HHHH
Q 000934 142 NTEIRCECLDILCDVLHKFGNL---MSND----HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLA---KATI 211 (1219)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~---l~~~----~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~---~l~~ 211 (1219)
+.++....+-.+.+++..-+.. +... .+.....++..+.+++.-++..|+..++.++...+..... ..++
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~ 149 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALP 149 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHH
Confidence 5678888888888888765432 1111 1225667777888889999999999999999887665433 6778
Q ss_pred HHHHHhhcCCC--ChHHHHHHHHHHHHHHHHhhhh--hccchhhhHHHHHHhh
Q 000934 212 EVVRNLRSKGA--KPEMIRTNIQMVGALSRAVGYR--FGPHLGDTVPVLIDYC 260 (1219)
Q Consensus 212 ~ll~~l~~~~~--~~~~~~~~i~~l~~l~~~~~~~--~~~~l~~iip~ll~~~ 260 (1219)
.+++.+.+... +.+.+..++++++.+++.-..| |.. ...++.+.+.+
T Consensus 150 ~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL 200 (312)
T PF03224_consen 150 KLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDIL 200 (312)
T ss_dssp HHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHH
Confidence 88777765321 1234578899999999865533 222 44555555555
No 241
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=85.43 E-value=3 Score=40.95 Aligned_cols=116 Identities=18% Similarity=0.279 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh----------------hhccc
Q 000934 185 SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY----------------RFGPH 248 (1219)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~----------------~~~~~ 248 (1219)
.||.+-..+++.++...-++.++++++.+++.++.. +.....++..+..+.+.... .+..+
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~---~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS---PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 467777777777776654445666777777666552 23455566666665554321 13345
Q ss_pred hhhhHHHHHHhhhccCCCC-hHHHHHHHHHHHHHHHhCchhhcccH-HHHHHHHHHhcc
Q 000934 249 LGDTVPVLIDYCTSASEND-EELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLS 305 (1219)
Q Consensus 249 l~~iip~ll~~~~~~~~~d-~elre~al~~l~~l~~~~~~~~~~~l-~~ii~~~l~~l~ 305 (1219)
.+.++..+.+.++...... +++...+++++.+++...|-. ... ..+++.+.+++.
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~--~i~~~~~l~~~~~~l~ 136 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIE--LIINSNLLNLIFQLLQ 136 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH--HHHSSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH--HhccHHHHHHHHHHcC
Confidence 6667777777766432222 888999999999999866532 111 236777777774
No 242
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.30 E-value=1.5e+02 Score=39.77 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=76.2
Q ss_pred cchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHH
Q 000934 483 TSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIY 562 (1219)
Q Consensus 483 ~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~ 562 (1219)
+..+|..++.++..++=.+.....+...+.|-..+...+.|..-.++.+|..++.-+++.- +.....+.-
T Consensus 1540 tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s----------~~~~~~~k~ 1609 (1710)
T KOG1851|consen 1540 TWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGS----------KFQFVSDKR 1609 (1710)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcc----------ccccchHhh
Confidence 4788999999999887655444556788899999999999987889999999999998642 111111112
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHH
Q 000934 563 NAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVL 608 (1219)
Q Consensus 563 ~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L 608 (1219)
............+......|..++|.++-.++..+...++..+..+
T Consensus 1610 d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~L 1655 (1710)
T KOG1851|consen 1610 DTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNL 1655 (1710)
T ss_pred hhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHH
Confidence 2222222333334556788888999888877554433344333333
No 243
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=85.16 E-value=97 Score=37.45 Aligned_cols=111 Identities=13% Similarity=0.152 Sum_probs=68.8
Q ss_pred HHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhh-hhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCch
Q 000934 429 KSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIG-SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFH 507 (1219)
Q Consensus 429 ~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~-~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~ 507 (1219)
..+.+.+.+++..+. ..++.++..++-.+++--+.++. ..+..+.+.+.+.. ++.|..++.+++.+.=+.......
T Consensus 422 ~plvqll~dp~~~i~-~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~--~n~r~~~~~~Lr~l~f~~de~~k~ 498 (678)
T KOG1293|consen 422 QPLVQLLMDPEIMIM-GITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPD--FNSRANSLWVLRHLMFNCDEEEKF 498 (678)
T ss_pred HHHHHHhhCcchhHH-HHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCC--chHHHHHHHHHHHHHhcchHHHHH
Confidence 344455567766666 67777777777655432222322 24666666666653 577888899999886554322111
Q ss_pred hhhhhhH-HHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 000934 508 PYIKALS-SPVLAAVGERYYKVTAEALRVCGELVRV 542 (1219)
Q Consensus 508 ~~l~~i~-p~l~~~l~d~~~~v~~~al~~l~~l~~~ 542 (1219)
..+.++- ..+....+|+++.|.+.++..+.++...
T Consensus 499 ~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 499 QLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 2333333 3344455899999999999888888653
No 244
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=84.99 E-value=3.9 Score=52.48 Aligned_cols=33 Identities=12% Similarity=0.014 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000934 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1219)
Q Consensus 206 ~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~ 240 (1219)
..-+++.+++.+..++. -.|..+-+.|+.++..
T Consensus 587 ~~vlveiLLslls~~s~--llR~~~~~vf~~~~~~ 619 (784)
T PF04931_consen 587 SEVLVEILLSLLSQPSA--LLRKVSEQVFEAFCPH 619 (784)
T ss_pred HHHHHHHHHHHHhCcch--HHHHHHHHHHHHHHhh
Confidence 45566777777766653 5777777778777644
No 245
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=84.69 E-value=77 Score=35.91 Aligned_cols=178 Identities=16% Similarity=0.183 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHhcCch--------hhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCC
Q 000934 343 WKVRRAAAKCLAALIVSRPE--------MLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNEL 414 (1219)
Q Consensus 343 wkVR~~Aa~~l~~li~~~~~--------~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~ 414 (1219)
|..|+.++.....++...++ ++......++..|+......+ +.-..+.+++..-..
T Consensus 90 fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~d------ial~~g~mlRec~k~---------- 153 (335)
T PF08569_consen 90 FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPD------IALNCGDMLRECIKH---------- 153 (335)
T ss_dssp HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTT------THHHHHHHHHHHTTS----------
T ss_pred CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcc------ccchHHHHHHHHHhh----------
Confidence 46788888888888776532 222222456666666654332 333455555543210
Q ss_pred ChhHHHHHHH--HHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchh----hhhhhhhhhHhHHHhhcCCCCcchhHH
Q 000934 415 NPRWLLKQEV--SKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDC----LADHIGSLIPGIEKSLNDKSSTSNLKI 488 (1219)
Q Consensus 415 ~~~~~L~~~~--p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~----l~~~~~~l~~~l~~~l~d~~~~~~~~~ 488 (1219)
..+.+++ ++.+..+.+....++-.+. ..|+..+.++...++.. +..+...++......|...+ .-.|-
T Consensus 154 ---e~l~~~iL~~~~f~~ff~~~~~~~Fdia-sdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N--Yvtkr 227 (335)
T PF08569_consen 154 ---ESLAKIILYSECFWKFFKYVQLPNFDIA-SDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN--YVTKR 227 (335)
T ss_dssp ---HHHHHHHHTSGGGGGHHHHTTSSSHHHH-HHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS--HHHHH
T ss_pred ---HHHHHHHhCcHHHHHHHHHhcCCccHhH-HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC--eEeeh
Confidence 0111111 3333445555666666777 88999999988776653 44567777777777776544 34577
Q ss_pred HHHHHHHHHhccCC-CCCchhhh--hhhHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 000934 489 EALTFTRLVLSSHS-PPVFHPYI--KALSSPVLAAVGERYYKVTAEALRVCGELVRV 542 (1219)
Q Consensus 489 ~al~~l~~l~~~~~-~~~~~~~l--~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~ 542 (1219)
.++.+|+.++.... ...+..|+ +.-+..+...++|++..++.+|+.++.-++..
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 89999999986421 12233454 34577778888999999999999999999875
No 246
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.54 E-value=39 Score=38.15 Aligned_cols=212 Identities=15% Similarity=0.133 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhccccCCC------ChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcCh
Q 000934 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKA------DADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE 79 (1219)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~------~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~ 79 (1219)
+-++|++. +.++|...-.+.-+...+..+.... ...........+++.++.++.-++..|.++++.++..-+.
T Consensus 60 ~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~ 138 (312)
T PF03224_consen 60 FLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK 138 (312)
T ss_dssp --HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence 34677777 5666776666666655555433110 0011122778888999989999999999999999876555
Q ss_pred hhHH---HHHHHHHHHhcC----CCcchhhHHHHHHHHHHhhcCChhhhHHHH-HhHhHHHHHhh-----hccCCChhHH
Q 000934 80 PRVV---EMTDKLCIKLLN----GKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGI-----TLKDMNTEIR 146 (1219)
Q Consensus 80 ~~~~---~l~~~L~~~~~~----~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~-~~l~p~L~~~l-----~~~~~~~~v~ 146 (1219)
..-. ..++.+++.+.+ ++.+...++..+|..+... +.+...++ ...++.+.+.+ .+........
T Consensus 139 ~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~---~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 139 RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS---KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS---HHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc---chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 4433 666777666653 2233456777777766532 12222222 23344444444 1111123344
Q ss_pred HHHHHHHHHHHHHhhh----hhhHhHHHHHHHHhhhhcCC-hHHHHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHh
Q 000934 147 CECLDILCDVLHKFGN----LMSNDHERLLSALLPQLSAN-QASVRKKSVSCIASLASSLSDDL----LAKATIEVVRNL 217 (1219)
Q Consensus 147 ~~al~~L~~l~~~~g~----~l~~~~~~l~~~ll~~l~~~-~~~vrk~a~~~l~~l~~~~~~~~----~~~l~~~ll~~l 217 (1219)
-+++-++=-+ .|-+ .+..+. +++.+...++.. ...|-+-++.++-++.....+.. +..=+..+++.|
T Consensus 216 Y~~ll~lWlL--SF~~~~~~~~~~~~--~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L 291 (312)
T PF03224_consen 216 YQALLCLWLL--SFEPEIAEELNKKY--LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL 291 (312)
T ss_dssp HHHHHHHHHH--TTSHHHHHHHHTTS--HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHH--hcCHHHHHHHhccc--hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence 4444333211 1111 121111 666666666543 34666677888888877666432 233344556666
Q ss_pred hcCCCChH
Q 000934 218 RSKGAKPE 225 (1219)
Q Consensus 218 ~~~~~~~~ 225 (1219)
...+|.++
T Consensus 292 ~~rk~~De 299 (312)
T PF03224_consen 292 SERKWSDE 299 (312)
T ss_dssp HSS--SSH
T ss_pred hcCCCCCH
Confidence 66665433
No 247
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=84.12 E-value=74 Score=36.02 Aligned_cols=200 Identities=16% Similarity=0.178 Sum_probs=118.6
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCC-h-hHHHHHHHHHHHHHHHHHhcccCccchhhHHH
Q 000934 371 ACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELN-P-RWLLKQEVSKIVKSINRQLREKSIKTKQVGAF 448 (1219)
Q Consensus 371 i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~-~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~ 448 (1219)
+++.|+..+..=+-+.|.++...+..+++..... .. | .+.+..+.|.++..+.+....++. . ..|-
T Consensus 77 ll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~---------~~~p~v~yl~~~~peil~~L~~gy~~~di--a-l~~g 144 (335)
T PF08569_consen 77 LLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGS---------RSPPTVDYLERHRPEILDILLRGYENPDI--A-LNCG 144 (335)
T ss_dssp HHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTT---------B--HHHHHHHT--THHHHHHHHGGGSTTT--H-HHHH
T ss_pred HHHHHHHHhhhCCCcccccHHHHHHHHHhhccCC---------CCCchHHHHHhCCHHHHHHHHHHhcCccc--c-chHH
Confidence 5566666776667788999999999998763211 11 2 345667779999999888875443 3 4455
Q ss_pred HHHHHHHHhcchhhhhh--hhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCC---CCchhhhhhhHHHHHHHhcC
Q 000934 449 SVLRELVVVLPDCLADH--IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSP---PVFHPYIKALSSPVLAAVGE 523 (1219)
Q Consensus 449 ~~L~~L~~~~~~~l~~~--~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~---~~~~~~l~~i~p~l~~~l~d 523 (1219)
.+|++.+.. ..+..+ -.+.+-.+.+.++.++ -.+..+|+..+..++..|.. +-+..+.+.+.......+..
T Consensus 145 ~mlRec~k~--e~l~~~iL~~~~f~~ff~~~~~~~--Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s 220 (335)
T PF08569_consen 145 DMLRECIKH--ESLAKIILYSECFWKFFKYVQLPN--FDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES 220 (335)
T ss_dssp HHHHHHTTS--HHHHHHHHTSGGGGGHHHHTTSSS--HHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-
T ss_pred HHHHHHHhh--HHHHHHHhCcHHHHHHHHHhcCCc--cHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 566665543 112111 1122333444444332 56888999999999988752 22334567777877888888
Q ss_pred CchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHH--HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhh
Q 000934 524 RYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQ--PIYNAIMSRLTNQDQDQEVKECAISCMGLVISTF 593 (1219)
Q Consensus 524 ~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~--~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~ 593 (1219)
.+|-.+..++..+++++-. +.. ..-...|+. .-+..++..|+ |....++-.|.+..-.++++-
T Consensus 221 ~NYvtkrqslkLL~ellld-r~n----~~vm~~yi~~~~nLkl~M~lL~--d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 221 SNYVTKRQSLKLLGELLLD-RSN----FNVMTRYISSPENLKLMMNLLR--DKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp SSHHHHHHHHHHHHHHHHS-GGG----HHHHHHHTT-HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHH-S
T ss_pred CCeEeehhhHHHHHHHHHc-hhH----HHHHHHHHCCHHHHHHHHHHhc--CcchhhhHHHHHHHHHHHhCC
Confidence 9999999999999999842 110 000011211 22333444454 445778888888888777663
No 248
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.86 E-value=83 Score=40.64 Aligned_cols=217 Identities=12% Similarity=0.054 Sum_probs=126.7
Q ss_pred hhhHHHHHHHHHHHhh-ccCCccchHhHHHHHHhhhhccCcccchHH-HHH----HhcCCCchhhHHHHhhhHhhhccCC
Q 000934 924 FQDSSVEKILNLLFNH-CESEEEGVRNVVAECLGKIALIEPAKLVPA-LKV----RTTSSAAFTRATVVIAIKYSIVERP 997 (1219)
Q Consensus 924 ~~~~~~~~i~~~L~~~-~~~~~e~~r~~~ae~LG~l~~~~p~~~lp~-l~~----~l~~~~~~~R~~~~~~~k~~~~~~~ 997 (1219)
.+..++..|+..+|-| ..|-+.++|..+.+-||-=+..-|..|+.. ..+ .|.+++..+|-.++.++.++.....
T Consensus 279 ~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~ 358 (1048)
T KOG2011|consen 279 EIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDE 358 (1048)
T ss_pred HHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccc
Confidence 4555677777777765 345567899888888888888888866532 222 3678999999999999999998732
Q ss_pred chhhhhhhHhHH----HHHhhc-cCCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHHHhhhcccccceeeeccCce
Q 000934 998 EKIDEIIFPEIS----SFLMLI-KDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFK 1072 (1219)
Q Consensus 998 ~~~~~~l~~~i~----~~l~~l-~D~~~~vR~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~elir~v~mgpfk 1072 (1219)
..+.|..+.. +++++. .|-+..||-+.+..+....+ .+.+=..-+..+++.+|+
T Consensus 359 --~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~-~g~L~d~di~~Vy~Li~d------------------ 417 (1048)
T KOG2011|consen 359 --DKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSS-SGLLSDKDILIVYSLIYD------------------ 417 (1048)
T ss_pred --cchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhc-ccccChhHHHHHHHHHhc------------------
Confidence 2223444443 455554 56778899888886665322 222223333445555553
Q ss_pred eecccChhHHHHHHHHHHHHHhhhhcCCCchhchHHHHhcccCCcchhHhhHHHHHHHHHhhCchhHHHhHHH-hhHHHH
Q 000934 1073 HTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDS-LVDPLQ 1151 (1219)
Q Consensus 1073 h~~Ddgle~Rk~a~e~l~~ll~~~~~~~~~~~~~~~~~~~gl~D~~di~~l~~~~l~~l~~~~p~~~~~~l~~-l~~~l~ 1151 (1219)
..-++|++|-+.+|.-+.....+. .............-.+.++.+....+.--.+.|-..++..+.. ...-++
T Consensus 418 ----~~r~~~~aa~~fl~~k~~~~~a~~--e~~~~~~~~~~~~~~~~l~~lv~~fi~~~l~~~~~ylv~~l~ds~~~~lk 491 (1048)
T KOG2011|consen 418 ----SNRRVAVAAGEFLYKKLFERVANS--ERVGAEKSLLKAENRELLPLLVSFFEESELHQHAAYLVDSLFDSLDFLLK 491 (1048)
T ss_pred ----cCcchHHHHHHHHHHHhhccccch--hhhccccccccccccchHHHHHHHhhhhhhhhhHHHHHHHHHHhhHHHhc
Confidence 334477899988888766531111 1111001111111266788777766666566655555544444 333332
Q ss_pred h--hhcccCCcchhhhhh
Q 000934 1152 K--TINFKPKQDAVKQEV 1167 (1219)
Q Consensus 1152 ~--~l~~k~k~~~~kqe~ 1167 (1219)
. .+..+.....+-|+.
T Consensus 492 Dw~c~~s~ll~~~~~~~~ 509 (1048)
T KOG2011|consen 492 DWACMTSLLLDKLLPQGQ 509 (1048)
T ss_pred ccHHHHHhhcccccchhh
Confidence 2 344555555444443
No 249
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=83.31 E-value=12 Score=46.85 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccchh-hhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHh
Q 000934 225 EMIRTNIQMVGALSRAVGYRFGPHLG-DTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEY 303 (1219)
Q Consensus 225 ~~~~~~i~~l~~l~~~~~~~~~~~l~-~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~ 303 (1219)
..|-.++.++|.+++.-|..+..-+. .+++.+++++.. |.+.-+-..|+.++..++-.+|..+.+|+++++.+..+.
T Consensus 83 ~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~--D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl 160 (668)
T PF04388_consen 83 SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQF--DTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRL 160 (668)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhh--cccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 46888999999999987755444332 578888888875 567777889999999999999999999999999999888
Q ss_pred cccC
Q 000934 304 LSYD 307 (1219)
Q Consensus 304 l~~d 307 (1219)
+..+
T Consensus 161 ~~W~ 164 (668)
T PF04388_consen 161 LSWE 164 (668)
T ss_pred HHcc
Confidence 7643
No 250
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=83.14 E-value=70 Score=34.27 Aligned_cols=150 Identities=15% Similarity=0.198 Sum_probs=87.6
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhh
Q 000934 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDI 289 (1219)
Q Consensus 210 ~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~ 289 (1219)
++.++..+.+... ++.....+.++..++. +++ ...+.++..+..... ....+.+-.+++.+..+...-+..+
T Consensus 2 l~~L~~~l~~~~~-~~~~~~~L~~L~~l~~---~~~-~~~~~v~~~L~~L~~---~~~~~~~~~~~rLl~~lw~~~~r~f 73 (234)
T PF12530_consen 2 LPLLLYKLGKISD-PELQLPLLEALPSLAC---HKN-VCVPPVLQTLVSLVE---QGSLELRYVALRLLTLLWKANDRHF 73 (234)
T ss_pred hHHHHHHhcCCCC-hHHHHHHHHHHHHHhc---cCc-cchhHHHHHHHHHHc---CCchhHHHHHHHHHHHHHHhCchHH
Confidence 3445554544432 3555555666666655 333 555556655555444 2444555556666666666655433
Q ss_pred cccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHH
Q 000934 290 SSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYE 369 (1219)
Q Consensus 290 ~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~ 369 (1219)
|++..++......+.. .+ -+++..|.+.-+.+.++..++..+|+ ...
T Consensus 74 -~~L~~~L~~~~~r~~~-~~---------------------------~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~ 120 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPS-SF---------------------------SSKDEFWECLISIAASIRDICCSRPD----HGV 120 (234)
T ss_pred -HHHHHHHHHHHhhccc-cc---------------------------CCCcchHHHHHHHHHHHHHHHHhChh----hHH
Confidence 5555544332111110 00 01234577787878888899999997 444
Q ss_pred HHHHHHHhhh-cccchhHHHHHHHHHHHHHHH
Q 000934 370 EACPKLIDRF-KEREENVKMDVFNTFIELVRQ 400 (1219)
Q Consensus 370 ~i~p~Li~~~-~d~~~~Vr~~~~~~l~~l~~~ 400 (1219)
.+++.+...+ ++.++.++.-+++++..+++.
T Consensus 121 ~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 121 DLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 4556666666 677888999999999999865
No 251
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=82.58 E-value=1.2e+02 Score=36.46 Aligned_cols=261 Identities=13% Similarity=0.164 Sum_probs=126.0
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhC---CHHH---HHHHHHHHHH
Q 000934 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSL---SDDL---LAKATIEVVR 215 (1219)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~---~~~~---~~~l~~~ll~ 215 (1219)
..++|..++..|..++++-..............+...-.+++-..|-.|+.+|..=+.-+ ..+. +..-++.+.+
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~ 121 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQ 121 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHH
Confidence 578999999999999887655322222222222211111122256667777765322222 1111 1222222221
Q ss_pred Hhh-------cC-----CC------ChHHHHHHHHHHHHHHHHhhhhhc-cchhhhHHHHHHhhhccCCCChHHHHHHHH
Q 000934 216 NLR-------SK-----GA------KPEMIRTNIQMVGALSRAVGYRFG-PHLGDTVPVLIDYCTSASENDEELREYSLQ 276 (1219)
Q Consensus 216 ~l~-------~~-----~~------~~~~~~~~i~~l~~l~~~~~~~~~-~~l~~iip~ll~~~~~~~~~d~elre~al~ 276 (1219)
... +. .. ....-...++.+..+.+-....+. ..+..++..++..|... ...+++ +.|+.
T Consensus 122 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~T-s~~~di-~~~L~ 199 (464)
T PF11864_consen 122 AARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKST-SSEDDI-EACLS 199 (464)
T ss_pred HHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc-CcHHHH-HHHHH
Confidence 100 00 00 011223455666666654433333 35667777777776643 233344 78999
Q ss_pred HHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHH
Q 000934 277 ALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAAL 356 (1219)
Q Consensus 277 ~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~l 356 (1219)
.|..++.+.- .....++.++..+....... +....+.+++..|
T Consensus 200 vldaii~y~~-iP~~sl~~~i~vLCsi~~~~------------------------------------~l~~~~w~~m~nL 242 (464)
T PF11864_consen 200 VLDAIITYGD-IPSESLSPCIEVLCSIVNSV------------------------------------SLCKPSWRTMRNL 242 (464)
T ss_pred HHHHHHHcCc-CChHHHHHHHHHHhhHhccc------------------------------------ccchhHHHHHHHH
Confidence 9999988431 22334555555554443211 1122344467777
Q ss_pred HhcCchhhHHHHHHHHHHHH--hhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHHHHH
Q 000934 357 IVSRPEMLSKLYEEACPKLI--DRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQ 434 (1219)
Q Consensus 357 i~~~~~~l~~~~~~i~p~Li--~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l~~~ 434 (1219)
+.++-. ......+...|. +.-..++.++-..++..+..++-..+.. + -| .+.-..+.+++.+...
T Consensus 243 ~~S~~g--~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~--~-------~~--~l~~~~~~vl~sl~~a 309 (464)
T PF11864_consen 243 LKSHLG--HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQ--G-------YP--SLPFSPSSVLPSLLNA 309 (464)
T ss_pred HcCccH--HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccC--C-------cc--eecccHHHHHHHHHHH
Confidence 765421 111222222221 0112344556567787888777654210 0 01 1111122467777788
Q ss_pred hcccCccchhhHHHHHHHHHH
Q 000934 435 LREKSIKTKQVGAFSVLRELV 455 (1219)
Q Consensus 435 L~~~~~~~r~~~~~~~L~~L~ 455 (1219)
++.++..+- ...+.++..+.
T Consensus 310 l~~~~~~v~-~eIl~~i~~ll 329 (464)
T PF11864_consen 310 LKSNSPRVD-YEILLLINRLL 329 (464)
T ss_pred HhCCCCeeh-HHHHHHHHHHH
Confidence 877666555 55555555655
No 252
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.01 E-value=7.6 Score=50.83 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=78.1
Q ss_pred chHhHHHHHHhhhhccCcccchHHHHHHh---cCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHhhccCCChHH
Q 000934 946 GVRNVVAECLGKIALIEPAKLVPALKVRT---TSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHV 1022 (1219)
Q Consensus 946 ~~r~~~ae~LG~l~~~~p~~~lp~l~~~l---~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~D~~~~v 1022 (1219)
.+-...+.|+++.+..+++.+-|..++.+ ++.++..|+.++..++.++...++.+-..+...+|-+-+.+.|.+.+|
T Consensus 1519 ~v~~~li~~i~~~~~a~~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~V 1598 (1621)
T KOG1837|consen 1519 IVSKLLIAEIASDSVADKDDLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEV 1598 (1621)
T ss_pred HHHHHHHHHHHhhccCChhhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHH
Confidence 35567888999999999888888888865 366778999999999999999999888889888888888999999999
Q ss_pred HHHHHHHHHHHHhcCch
Q 000934 1023 RRAAVLALSTFAHNKPN 1039 (1219)
Q Consensus 1023 R~~a~~~L~~~~~~~p~ 1039 (1219)
...+...+...=+.-|+
T Consensus 1599 e~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1599 ECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred HHHHHHHHHHHHHHhch
Confidence 99999877665444444
No 253
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=81.80 E-value=84 Score=34.23 Aligned_cols=145 Identities=19% Similarity=0.201 Sum_probs=85.8
Q ss_pred hHhHHHHHhhhccCC--ChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH
Q 000934 127 SLTPQLTKGITLKDM--NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD 204 (1219)
Q Consensus 127 ~l~p~L~~~l~~~~~--~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~ 204 (1219)
..+|++++.+.++++ .........+.|+.+++..|. +....++..+...--.+ ...=..+.+..+..++.++
T Consensus 111 a~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~---~~La~il~~ya~~~fr~---~~dfl~~v~~~l~~~f~P~ 184 (262)
T PF14225_consen 111 ALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGL---PNLARILSSYAKGRFRD---KDDFLSQVVSYLREAFFPD 184 (262)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCC---ccHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHhCch
Confidence 456899998887641 013334555677777755443 22333333332211111 1111222333344444333
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHh
Q 000934 205 LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR 284 (1219)
Q Consensus 205 ~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~ 284 (1219)
+-..++..+++.+.++. +..+...++.+..+......+ .|+-++++..+++.++. +....|++.+...+..
T Consensus 185 ~~~~~l~~Ll~lL~n~~--~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t------~~~~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 185 HEFQILTFLLGLLENGP--PWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQT------DLWMEALEVLDEIVTR 255 (262)
T ss_pred hHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCC------ccHHHHHHHHHHHHhh
Confidence 33456777777777654 258889999999999888766 66888899999998873 3455577777777766
Q ss_pred Cc
Q 000934 285 CP 286 (1219)
Q Consensus 285 ~~ 286 (1219)
.+
T Consensus 256 s~ 257 (262)
T PF14225_consen 256 SG 257 (262)
T ss_pred cc
Confidence 55
No 254
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.59 E-value=3.6 Score=41.64 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=70.9
Q ss_pred cchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCc---hhh
Q 000934 965 KLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKP---NLI 1041 (1219)
Q Consensus 965 ~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~D~~~~vR~~a~~~L~~~~~~~p---~~i 1041 (1219)
.|+|.+..-+..-.---|.++.+.+..++..+++.+-+.|..+|..+-.+|+-.|.+|...++.+|..++...| ..+
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 56677766665544556777788888888888887888888888888889998899999999999998776655 678
Q ss_pred hchhhhhhHHHH
Q 000934 1042 KGLLPELLPLLY 1053 (1219)
Q Consensus 1042 ~~~l~~llp~l~ 1053 (1219)
.|++.++||.+-
T Consensus 194 VPfYRQlLp~~n 205 (262)
T KOG3961|consen 194 VPFYRQLLPVLN 205 (262)
T ss_pred hhHHHHhhhhhh
Confidence 899999999663
No 255
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.63 E-value=48 Score=44.18 Aligned_cols=113 Identities=18% Similarity=0.198 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchh-hhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCC
Q 000934 424 VSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDC-LADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS 502 (1219)
Q Consensus 424 ~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~-l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~ 502 (1219)
+..-+..+.+-+..+++.+| .-|+.-|++++...... +...++.......+...|.+ ..+|..+..++..++....
T Consensus 39 ~dsel~~I~kkL~KkD~~TK-~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~--~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTK-IKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDED--RTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred cCHHHHHHHHHHhccChHHH-HHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCcc--HHHHHHHHHHHHHHHHHHH
Confidence 33334555666667788888 88888888888754322 11112222223333444432 5789999999888887654
Q ss_pred CCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 000934 503 PPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELV 540 (1219)
Q Consensus 503 ~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~ 540 (1219)
..+.||+..++|..+.+..|.++.|...|...+....
T Consensus 116 -k~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f 152 (1312)
T KOG0803|consen 116 -KKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGF 152 (1312)
T ss_pred -HHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhc
Confidence 5678999999999999999999999888877766553
No 256
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=80.06 E-value=13 Score=38.37 Aligned_cols=81 Identities=11% Similarity=0.134 Sum_probs=60.6
Q ss_pred cchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCchhhhch
Q 000934 965 KLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGL 1044 (1219)
Q Consensus 965 ~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~D~~~~vR~~a~~~L~~~~~~~p~~i~~~ 1044 (1219)
.|++.+.+...++++.+|..++..++.++.-|-. .| ..|+|.++....|++..+|..|...+..+....|+.+...
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv--nP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLV--NP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC--Ch--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4556666666666777777777777766665421 11 3588999988889999999999999999999999988777
Q ss_pred hhhhh
Q 000934 1045 LPELL 1049 (1219)
Q Consensus 1045 l~~ll 1049 (1219)
+.+-+
T Consensus 84 ~~~gi 88 (187)
T PF12830_consen 84 YSEGI 88 (187)
T ss_pred HHHHH
Confidence 65533
No 257
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=79.54 E-value=2.3e+02 Score=37.89 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHH----HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhH
Q 000934 343 WKVRRAAAKCLAALIVSRPEMLSK----LYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418 (1219)
Q Consensus 343 wkVR~~Aa~~l~~li~~~~~~l~~----~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 418 (1219)
-.+||.|..+|-.| +|++.-.. -+..++..++..+.+.-+ +..+.+..+++.. .|+.|.... .
T Consensus 365 ~aLRrYa~MALTNL--TFGDv~NKa~LCs~rgfMeavVAQL~s~pe----eL~QV~AsvLRNL----SWRAD~nmK---k 431 (2195)
T KOG2122|consen 365 NALRRYAGMALTNL--TFGDVANKATLCSQRGFMEAVVAQLISAPE----ELLQVYASVLRNL----SWRADSNMK---K 431 (2195)
T ss_pred HHHHHHHHHHhhcc--ccccccchhhhhhhhhHHHHHHHHHhcChH----HHHHHHHHHHHhc----cccccccHH---H
Confidence 46888888888766 34431110 234455566666544332 3466777777765 477653211 0
Q ss_pred HHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHh
Q 000934 419 LLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVV 457 (1219)
Q Consensus 419 ~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~ 457 (1219)
.|. .+..+.....-.+..++..+- .+.+++|..|..+
T Consensus 432 vLr-E~GsVtaLa~~al~~~kEsTL-KavLSALWNLSAH 468 (2195)
T KOG2122|consen 432 VLR-ETGSVTALAACALRNKKESTL-KAVLSALWNLSAH 468 (2195)
T ss_pred HHH-hhhhHHHHHHHHHHhcccchH-HHHHHHHhhhhhc
Confidence 121 222222222223444444444 5666677776654
No 258
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.38 E-value=2.4e+02 Score=38.01 Aligned_cols=140 Identities=16% Similarity=0.169 Sum_probs=84.6
Q ss_pred cccHHHHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChh
Q 000934 340 DASWKVRRAAAKCLAALIVS--RPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPR 417 (1219)
Q Consensus 340 D~swkVR~~Aa~~l~~li~~--~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 417 (1219)
+.+|+||-+..+-+.+++-. ++ .....-+.+-..+.+.+.|.+-.||..+..++..+++...-
T Consensus 1538 ~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~-------------- 1602 (1710)
T KOG1851|consen 1538 SSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKF-------------- 1602 (1710)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccc--------------
Confidence 35799999999888876533 33 11222233333444556888888999999999999875320
Q ss_pred HHHHHHHHHHHHHHHHHhccc--CccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHH
Q 000934 418 WLLKQEVSKIVKSINRQLREK--SIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTR 495 (1219)
Q Consensus 418 ~~L~~~~p~lv~~l~~~L~~~--~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~ 495 (1219)
...+...+........+ ..... ++++-.|+.++..+|-.+-..++..+..+....+++ ..++..+-..+.
T Consensus 1603 ----~~~~~k~d~~~~~~~s~s~~~i~~-HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~---~~i~~tvkktvs 1674 (1710)
T KOG1851|consen 1603 ----QFVSDKRDTTSNILQSKSKDEIKA-HGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES---AAIKQTVKKTVS 1674 (1710)
T ss_pred ----ccchHhhhhhhhhhhhcchHHHHh-hhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc---hHHHHHHHHHHH
Confidence 11111222222222222 12234 788889999999888766556666666555554443 346666667777
Q ss_pred HHhccCC
Q 000934 496 LVLSSHS 502 (1219)
Q Consensus 496 ~l~~~~~ 502 (1219)
.+-..|.
T Consensus 1675 eFrrth~ 1681 (1710)
T KOG1851|consen 1675 EFRRTHA 1681 (1710)
T ss_pred HHHHHhh
Confidence 7766653
No 259
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=79.32 E-value=2.3e+02 Score=37.84 Aligned_cols=73 Identities=10% Similarity=0.134 Sum_probs=47.3
Q ss_pred hhHHHHHHHhhcCCc--hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 000934 602 PACLPVLVDRMGNEI--TRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAY 674 (1219)
Q Consensus 602 ~~~l~~L~~~L~~e~--~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~ 674 (1219)
..|+.+|+..|+.+. ...+++.+|-++.......+--=|-...++.|..++.+.++..-..+..+|..++..-
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 356777777777653 3456777777765332121111233557888999998888877777778888877654
No 260
>PF05536 Neurochondrin: Neurochondrin
Probab=77.83 E-value=1.8e+02 Score=35.64 Aligned_cols=135 Identities=19% Similarity=0.229 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhh--HhHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhCCHH--HH--HHHHHHHHH
Q 000934 143 TEIRCECLDILCDVLHKFGNLMS--NDHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDD--LL--AKATIEVVR 215 (1219)
Q Consensus 143 ~~v~~~al~~L~~l~~~~g~~l~--~~~~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~--~~--~~l~~~ll~ 215 (1219)
...+.-++.+|..++. .+.+. +..-..++.++..+.+... .+-.-+.+||..++.+ ++. .+ ...++.+.+
T Consensus 71 ~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHH
Confidence 4456667777777665 33332 4456667888888876666 8889999999999944 332 22 235667777
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHhhhh----hccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCc
Q 000934 216 NLRSKGAKPEMIRTNIQMVGALSRAVGYR----FGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1219)
Q Consensus 216 ~l~~~~~~~~~~~~~i~~l~~l~~~~~~~----~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1219)
.+.+.. ...+.+++++..++...+.. -...+..+++.+-..+.. ..++.+=..+..+..|...+|
T Consensus 148 i~~~~~---~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~---~~~~~kfell~~L~~~L~~~~ 216 (543)
T PF05536_consen 148 IIPNQS---FQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSS---FHGEDKFELLEFLSAFLPRSP 216 (543)
T ss_pred HHHhCc---chHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHh---hccchHHHHHHHHHHhcCcCC
Confidence 666532 46788899998888776532 233455666666555542 334445456666777766664
No 261
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=77.69 E-value=1.3e+02 Score=34.31 Aligned_cols=164 Identities=16% Similarity=0.149 Sum_probs=99.7
Q ss_pred HHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCC--------------hHHHHHHHHHHHH
Q 000934 130 PQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSAN--------------QASVRKKSVSCIA 195 (1219)
Q Consensus 130 p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~--------------~~~vrk~a~~~l~ 195 (1219)
-.+++.++.+. +|+|-...+.-|...+.+-.-......+.+...+...+.++ +..+......+|+
T Consensus 144 ~~il~~L~~e~-dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~Ls 222 (356)
T PF03542_consen 144 SVILQCLEHET-DWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPVLS 222 (356)
T ss_pred HHHHHHHhcCC-CcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 34445555443 78887777777766666543332222455555555443321 2346666777777
Q ss_pred HHHhh---CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHH
Q 000934 196 SLASS---LSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELRE 272 (1219)
Q Consensus 196 ~l~~~---~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre 272 (1219)
.|..| +++..-++++..+..++.+. ..+.+++++...+...|..+.++++.++..+-+... ...+.-
T Consensus 223 ~LisYh~~~~k~~qd~iV~~l~~GL~s~-----~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~t-----t~~~Ai 292 (356)
T PF03542_consen 223 ALISYHSHFSKQEQDEIVRALESGLGSK-----TAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIST-----TPNMAI 292 (356)
T ss_pred HHHHHHHhcCHhHHHHHHHHHHHHhccC-----cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc-----chhhHH
Confidence 77765 34445677888888887642 235788898888888899888888888877655443 122322
Q ss_pred HHHHHHHHHHHhCc-hhhcc----cHHHHHHHHHHhcc
Q 000934 273 YSLQALESFLLRCP-RDISS----YCDEILHLTLEYLS 305 (1219)
Q Consensus 273 ~al~~l~~l~~~~~-~~~~~----~l~~ii~~~l~~l~ 305 (1219)
..++.|..+ .+.| ...+. ....++..+++|++
T Consensus 293 ~ILEFLs~L-~~lP~~ly~nF~~~~y~~VF~I~l~Y~~ 329 (356)
T PF03542_consen 293 HILEFLSSL-SRLPNHLYSNFTEDEYKRVFAIALPYTQ 329 (356)
T ss_pred HHHHHHHHH-hhCcHHHhcCCCHHHHHHHHHHHhhccc
Confidence 234444333 3556 44333 34578888888874
No 262
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=77.34 E-value=1.9e+02 Score=35.68 Aligned_cols=138 Identities=14% Similarity=0.180 Sum_probs=67.9
Q ss_pred hhhhhhHhHHHHHHHHhhhhc-CChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCC------------ChHH
Q 000934 160 FGNLMSNDHERLLSALLPQLS-ANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGA------------KPEM 226 (1219)
Q Consensus 160 ~g~~l~~~~~~l~~~ll~~l~-~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~------------~~~~ 226 (1219)
....+...+..++..++...= .-++.+++.-..-++.|+..- ..++..++..+++.+..+.. ....
T Consensus 63 ~Vs~Ld~~~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~-~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~ 141 (563)
T PF05327_consen 63 CVSLLDSSCKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQ-PKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREI 141 (563)
T ss_dssp GGGGG-SCCHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH--GGGHHHHHHHHHHGGGS-HHHHHH------------
T ss_pred HHHHhhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhccCCCccccccchhhhhhhhhh
Confidence 334444447777777766522 234467777777777776654 33566777777777654321 0122
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHh
Q 000934 227 IRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEY 303 (1219)
Q Consensus 227 ~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~ 303 (1219)
......++..|++..|.. ...++|.+.+.+.......... ..-+.-+=.+..++|..-...+.-|+..+++.
T Consensus 142 ~~~vH~~L~~Il~lvP~s----~~~L~~~l~~~FP~~~~~~~~~-~~Yv~NlL~l~~Y~P~L~~~Il~lIi~rLi~i 213 (563)
T PF05327_consen 142 YERVHDALQKILRLVPTS----PSFLIPILVQNFPHKRKSKDEH-VNYVRNLLRLTEYCPELRSDILSLIIERLIKI 213 (563)
T ss_dssp ---HHHHHHHHHHH-GGG----HHHHHHHHHHTS--TTS-HHHH-HHHHHHHHHHHCC-GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC----HHHHHHHHHHcCcCCCCChHHH-HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHH
Confidence 234677888888877643 2334444444444321222222 22333444566778754445556666555443
No 263
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=76.79 E-value=12 Score=34.85 Aligned_cols=58 Identities=7% Similarity=0.099 Sum_probs=40.6
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhH-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Q 000934 142 NTEIRCECLDILCDVLHKFGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLAS 199 (1219)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~-~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~ 199 (1219)
++.+..-||.=+|++++.++..-.- ..-..-..+|..+.++++.||+.|+.|+..+..
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4566667888889999887543110 122346678888999999999999999987764
No 264
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=76.66 E-value=1.3e+02 Score=33.54 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=67.5
Q ss_pred HhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHH-H
Q 000934 128 LTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL-L 206 (1219)
Q Consensus 128 l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~-~ 206 (1219)
..|-|+..+... .-.|+...++++...+-..|..+.+....++-.+++.+.++.+.+.+++...+..+...+++.+ +
T Consensus 98 ~~~GLfpl~~~a--si~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~ 175 (307)
T PF04118_consen 98 YSPGLFPLFSYA--SIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFW 175 (307)
T ss_pred HHHHHHHHHHHH--HHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHH
Confidence 446666666654 4678989999998888888888889999999999999999989999999999999999988884 3
Q ss_pred HHHHHH
Q 000934 207 AKATIE 212 (1219)
Q Consensus 207 ~~l~~~ 212 (1219)
+.+...
T Consensus 176 ~~lwl~ 181 (307)
T PF04118_consen 176 QCLWLC 181 (307)
T ss_pred HHHHHH
Confidence 444333
No 265
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=76.52 E-value=5.3 Score=36.40 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=48.6
Q ss_pred chhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhc
Q 000934 459 PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG 522 (1219)
Q Consensus 459 ~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~ 522 (1219)
|+.+.+|++.++..+..+|.+-. +.+|.+++.++..+++.++...+..+..++++.....++
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~--~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHIS--PDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCC--HHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 34578899999999999998765 789999999999999987654355566666666666554
No 266
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=76.36 E-value=1.1e+02 Score=32.37 Aligned_cols=87 Identities=17% Similarity=0.035 Sum_probs=69.0
Q ss_pred HHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhcc-CccchhhHHHHHHHHHHhhhcChh-hHHHH
Q 000934 8 AILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSEP-RVVEM 85 (1219)
Q Consensus 8 ~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~-D~~~eVq~~A~k~l~~l~~~~~~~-~~~~l 85 (1219)
.+..++.+.|+..|--|+..|.+.|...+...++....++-.+|+=++= ...+.||..-+..|+.++..++.+ .....
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~~~~~~f 83 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSEKAALLF 83 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcChHHHHHH
Confidence 5677899999999999999999999886654477778888888886663 445789999999999999887776 55566
Q ss_pred HHHHHHHhc
Q 000934 86 TDKLCIKLL 94 (1219)
Q Consensus 86 ~~~L~~~~~ 94 (1219)
+...+..+.
T Consensus 84 ~~~f~~tm~ 92 (217)
T PF05997_consen 84 LKAFWETMR 92 (217)
T ss_pred HHHHHHHHH
Confidence 666666654
No 267
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=75.69 E-value=11 Score=37.46 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=45.5
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhHHHHHHHhcccc--CCCChHHHHHHHHHHHHhcc
Q 000934 1 MANLQMAAILEKITGKDKDFRYMATSDLLNELNKES--FKADADLEVKLSNIVVQQLD 56 (1219)
Q Consensus 1 ~~~~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~--~~~~~~~~~~v~~~ll~~L~ 56 (1219)
|+...+..++..+.|.---.|--|+.+|...+.++. ..++......+.+.|++.+.
T Consensus 1 M~~~~i~~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~ 58 (155)
T PF11640_consen 1 MSTLDINSILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIE 58 (155)
T ss_pred CccchHHHHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHH
Confidence 888999999999999888889999999999998765 55566666777777775554
No 268
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=75.64 E-value=3.6 Score=30.39 Aligned_cols=41 Identities=17% Similarity=0.396 Sum_probs=31.5
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q 000934 351 KCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNT 393 (1219)
Q Consensus 351 ~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~ 393 (1219)
++++.++...|..+. .+.+...+..++.|....||..+++.
T Consensus 1 k~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 1 KALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred ChHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 367778888886654 33677778889999999999988764
No 269
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.60 E-value=16 Score=37.29 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhC
Q 000934 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1219)
Q Consensus 206 ~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1219)
+..+++.+..++...+. .-|-.+-+-+-.+....|.++.|-||++|..+-.++.. -|.|+...+++++..++...
T Consensus 112 y~~yLp~F~dGL~e~~h--pyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~t---rd~ev~~~~Lkvlq~lv~~~ 186 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDH--PYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVT---RDDEVICRTLKVLQQLVVSV 186 (262)
T ss_pred chHHHHHHhhhhhhcCC--CcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHhc
Confidence 45677777777765443 23334556666777778899999999999999998884 68899999999999998765
Q ss_pred c---hhhcccHHHHHHHHHHh
Q 000934 286 P---RDISSYCDEILHLTLEY 303 (1219)
Q Consensus 286 ~---~~~~~~l~~ii~~~l~~ 303 (1219)
+ ..+-||..++++.+-.+
T Consensus 187 ~~vG~aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 187 GCVGAALVPFYRQLLPVLNTF 207 (262)
T ss_pred cccchhhhhHHHHhhhhhhhh
Confidence 4 67889999999987654
No 270
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=74.99 E-value=1.6e+02 Score=33.70 Aligned_cols=242 Identities=17% Similarity=0.210 Sum_probs=123.5
Q ss_pred HhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHHHHH--hhcCC-CC----hHHHHH
Q 000934 166 NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL---------LAKATIEVVRN--LRSKG-AK----PEMIRT 229 (1219)
Q Consensus 166 ~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~---------~~~l~~~ll~~--l~~~~-~~----~~~~~~ 229 (1219)
.|...+.+++-+.+...++....+...++|.+..+++.-+ +..+++.++=. +.... .. ...++.
T Consensus 65 ~Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~llLp~~l~~~k~l~~~l~~ai~k~ 144 (373)
T PF14911_consen 65 EYFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDCLLLPTVLQQDKPLPPALLQAIRKS 144 (373)
T ss_pred HHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHHhcccccccCCCCCChHHHHHHHHH
Confidence 4556666666677756667888888888888887776543 34444444321 11111 00 122332
Q ss_pred ---HHHHHHHHHHHhhhhhccchhhh----HHHHHHhhh-c---------------cCCCChHHHHHHHHHH-HHHHHhC
Q 000934 230 ---NIQMVGALSRAVGYRFGPHLGDT----VPVLIDYCT-S---------------ASENDEELREYSLQAL-ESFLLRC 285 (1219)
Q Consensus 230 ---~i~~l~~l~~~~~~~~~~~l~~i----ip~ll~~~~-~---------------~~~~d~elre~al~~l-~~l~~~~ 285 (1219)
+++.+|.+ +.+-++|+++. +..-+..+. . ....+.++|+.+++.+ +++...-
T Consensus 145 lpl~lqGl~~~----~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~~~ 220 (373)
T PF14911_consen 145 LPLFLQGLGRL----SQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTPRNEELRKFILQVIRSNFLEFK 220 (373)
T ss_pred HHHHHHHHHhc----ccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhhhhhHHHHHHHHHHHHHHhcCC
Confidence 33444322 22333444333 222211111 0 0134667777777766 3444444
Q ss_pred chhhcccHHHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhH
Q 000934 286 PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLS 365 (1219)
Q Consensus 286 ~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~ 365 (1219)
+....|++..++..+.+.++--.. . .-+...
T Consensus 221 ~~~p~p~l~~vL~fl~~Ll~~~~~--~-----------------------------------------------~~~~~~ 251 (373)
T PF14911_consen 221 GSAPPPRLASVLAFLQQLLKRLQR--Q-----------------------------------------------NENQIL 251 (373)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCc--c-----------------------------------------------cchhHH
Confidence 445667888887777776642000 0 001112
Q ss_pred HHHHHHHHHHHhhh--cccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHH-HHHHHhcccCccc
Q 000934 366 KLYEEACPKLIDRF--KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVK-SINRQLREKSIKT 442 (1219)
Q Consensus 366 ~~~~~i~p~Li~~~--~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~-~l~~~L~~~~~~~ 442 (1219)
...+.++|.+++.+ -+.++.+|.-+...+..+++..... .+.++ .+.+...+. .+.+.+.- .
T Consensus 252 ~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~-------~~~~~----~~~l~s~lrsfvqk~l~~----~ 316 (373)
T PF14911_consen 252 TLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVG-------SSGEP----REQLTSVLRSFVQKYLAH----Y 316 (373)
T ss_pred HHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccccc-------CcchH----HHHHHHHHHHHHHHHhhh----h
Confidence 23445566666553 4456889999998888888865411 01122 233322222 22222321 1
Q ss_pred hhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCC
Q 000934 443 KQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDK 480 (1219)
Q Consensus 443 r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~ 480 (1219)
- .-.++++..++.-.|. .+..++|.+...+.+.
T Consensus 317 t-~~~f~~l~~vA~l~p~----lV~~Lip~i~q~l~~~ 349 (373)
T PF14911_consen 317 T-YQYFQFLEKVAELDPQ----LVISLIPTIRQSLKDS 349 (373)
T ss_pred h-HHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHH
Confidence 1 4467788888775433 4566677777666543
No 271
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=74.80 E-value=14 Score=35.93 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcC
Q 000934 44 EVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLN 95 (1219)
Q Consensus 44 ~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~ 95 (1219)
.+.+-+.++.+|.+++++||+.|.+||-. ++.+.+.++-+.|.+.+.+
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~----~k~~~l~pY~d~L~~Lldd 62 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLT----WKDPYLTPYKDNLENLLDD 62 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCcHHHHhHHHHHHHHcCc
Confidence 45677788899999999999999999975 4556788888888887754
No 272
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=74.77 E-value=4.5 Score=29.63 Aligned_cols=29 Identities=24% Similarity=0.079 Sum_probs=26.6
Q ss_pred HHHHHHHHhccCccchhhHHHHHHHHHHh
Q 000934 46 KLSNIVVQQLDDVAGDVSGLAVKCLAPLV 74 (1219)
Q Consensus 46 ~v~~~ll~~L~D~~~eVq~~A~k~l~~l~ 74 (1219)
.+++.|+++|.+++.+||..|+-+|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999875
No 273
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=72.77 E-value=75 Score=31.44 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhc------CCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHH
Q 000934 185 SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRS------KGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLID 258 (1219)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~------~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~ 258 (1219)
.+-..++.|+-.++-.+++..|.++.-.++.=-.. ...+...+-+....+..++.....-|.||...+++...+
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667788888888888888777777766644322 222223344567888888888888899999999888877
Q ss_pred hhhc
Q 000934 259 YCTS 262 (1219)
Q Consensus 259 ~~~~ 262 (1219)
.++.
T Consensus 116 ~L~~ 119 (153)
T PF08146_consen 116 LLKQ 119 (153)
T ss_pred HHHH
Confidence 7753
No 274
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=71.68 E-value=15 Score=32.80 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=48.8
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChH--HHHHHHHHHHHHHHh
Q 000934 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQA--SVRKKSVSCIASLAS 199 (1219)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~--~vrk~a~~~l~~l~~ 199 (1219)
++.+|..|-.+|+.++.+|+..-..-.+.+.+.+...+.|++. ...=.|+.+|..|+.
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999999987656678899999999987754 577788888888754
No 275
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=71.66 E-value=19 Score=37.10 Aligned_cols=70 Identities=17% Similarity=0.080 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcC
Q 000934 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS 78 (1219)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~ 78 (1219)
..+..+++-..++|..+|..|+.-+...++.+-.+ -...++.++.+..||++.+|+.|.+++..+..|.+
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 34566666677888888888887776666654332 23577888888888899999998888887766533
No 276
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.01 E-value=3e+02 Score=35.14 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=68.0
Q ss_pred hhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 000934 510 IKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLV 589 (1219)
Q Consensus 510 l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l 589 (1219)
+.+|+......+.++...++-+||.++..-+-.+... ...+-|.+.+.++.++.++... |+-+-++|+.|+-.+
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~----~n~LlPlvhq~W~~vie~~~~k--~~L~v~~a~~~i~~m 874 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATY----HNLLLPLVHQTWPSVIECLLCK--DPLIVQRAFSCIEQM 874 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhcc----chhHhHHHHhhhhHHHHHHhcC--chHHHHHHHHHHHHH
Confidence 3445555556677888889999999988766554322 3457788888999999988643 567789999999999
Q ss_pred HHhhcccccc-hhhhHHHHH
Q 000934 590 ISTFGDNLGA-ELPACLPVL 608 (1219)
Q Consensus 590 ~~~~g~~l~~-~~~~~l~~L 608 (1219)
....|+.+.. .++.++|.+
T Consensus 875 ~~~sgDFv~sR~l~dvlP~l 894 (1014)
T KOG4524|consen 875 GKYSGDFVASRFLEDVLPWL 894 (1014)
T ss_pred HHHhhhHHHHHHHHHHHHHH
Confidence 9999997754 455555544
No 277
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=70.99 E-value=6.5 Score=28.74 Aligned_cols=28 Identities=32% Similarity=0.500 Sum_probs=25.3
Q ss_pred hHHHHHHhcCCCchhHhHHHHHHHHhhh
Q 000934 854 IENVIIESFQSPFEEIKSAASYALGNIA 881 (1219)
Q Consensus 854 l~~~ll~~l~~~~e~vR~aAa~aLG~l~ 881 (1219)
..+.+++++.+++++++..|+.|||+++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5677899999999999999999999876
No 278
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.64 E-value=2.3e+02 Score=38.40 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=78.1
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhCCHH----HHHHHHHHHHHHh---hcCCC---C-hHHHHHHHHHHHHHHH---H
Q 000934 175 LLPQLSANQASVRKKSVSCIASLASSLSDD----LLAKATIEVVRNL---RSKGA---K-PEMIRTNIQMVGALSR---A 240 (1219)
Q Consensus 175 ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~----~~~~l~~~ll~~l---~~~~~---~-~~~~~~~i~~l~~l~~---~ 240 (1219)
+-....+.+..||+++++.+-.+....++. .|..+...++.-+ +.+.. + +=...+..+++..++. .
T Consensus 1179 ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~ 1258 (1514)
T KOG0929|consen 1179 LSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQ 1258 (1514)
T ss_pred hhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333344677899999999987776655554 4666655222222 11110 0 0123344444444443 3
Q ss_pred hhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcc-cHHHHHHHHHHhcc
Q 000934 241 VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISS-YCDEILHLTLEYLS 305 (1219)
Q Consensus 241 ~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~-~l~~ii~~~l~~l~ 305 (1219)
.-..+.+.|+.+.-.+..++. .++..+......+|..++...+..|.. .++++...+.+..+
T Consensus 1259 ~~~~l~~lL~~~~~ll~~ci~---~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~ 1321 (1514)
T KOG0929|consen 1259 FFKQLNNLLPKVLGLLVGCIK---QDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFK 1321 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---CcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHH
Confidence 334455566777777677666 467888888999999999988776664 46777777666543
No 279
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=70.31 E-value=1.1e+02 Score=31.84 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 000934 143 TEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEV 213 (1219)
Q Consensus 143 ~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l 213 (1219)
...-.+.+.+++.+..++|..-.+....+++.+-..-.+++-..|+.+-.|+|.....+|.+.+=.++|--
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLn 84 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLN 84 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCC
Confidence 34566778888888888888766777788888777767766789999999999999999998765666633
No 280
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=69.48 E-value=33 Score=31.94 Aligned_cols=51 Identities=31% Similarity=0.439 Sum_probs=30.6
Q ss_pred chhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCch---hhcccHHHHHHHHHHh
Q 000934 248 HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR---DISSYCDEILHLTLEY 303 (1219)
Q Consensus 248 ~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~---~~~~~l~~ii~~~l~~ 303 (1219)
|+.+++..+. .. +++.+-.+.|+...+.++++-+. ++..|-.+++..++..
T Consensus 4 YlrDll~~L~----~~-~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L 57 (114)
T PF10193_consen 4 YLRDLLEYLR----SD-DEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHL 57 (114)
T ss_dssp -HHHHHHHHT-----------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHh----cC-cCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhc
Confidence 5555555543 21 23577778999999999999887 8888888888777653
No 281
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=69.15 E-value=23 Score=31.05 Aligned_cols=64 Identities=13% Similarity=0.185 Sum_probs=52.2
Q ss_pred HHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHH
Q 000934 131 QLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIA 195 (1219)
Q Consensus 131 ~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~ 195 (1219)
.+...+... .+.++|.-.++++..++...|..+.+-++.++.++-....+++..+-+.|.+++.
T Consensus 21 Pf~~i~~~~-~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 21 PFEYIMSNN-PSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHhcc-CcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 343433333 3789999999999999999999999999999999998888877778888887764
No 282
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=67.87 E-value=8.2 Score=28.54 Aligned_cols=40 Identities=30% Similarity=0.454 Sum_probs=28.2
Q ss_pred HHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHH
Q 000934 153 LCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCI 194 (1219)
Q Consensus 153 L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l 194 (1219)
|+.+++..+..+ ..+.+++.+...+.|+++.||+.|+..+
T Consensus 3 l~~iv~~dp~ll--~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLL--DSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCcccc--chHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 344444444443 2357888888889999999999998753
No 283
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=67.66 E-value=1.8e+02 Score=31.18 Aligned_cols=138 Identities=14% Similarity=0.033 Sum_probs=73.0
Q ss_pred hccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHH-H
Q 000934 54 QLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQ-L 132 (1219)
Q Consensus 54 ~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~-L 132 (1219)
.-+.++++++....++|+.++..-. .....++..|......++.+.+.++...+-.+.+.-+. .. +.++.++-. .
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r--~f-~~L~~~L~~~~ 84 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR--HF-PFLQPLLLLLI 84 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch--HH-HHHHHHHHHHH
Confidence 4557788888888888888876432 34445555555555444433322222222222222111 11 112211111 1
Q ss_pred HH---hhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhh-cCChHHHHHHHHHHHHHHHh
Q 000934 133 TK---GITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQL-SANQASVRKKSVSCIASLAS 199 (1219)
Q Consensus 133 ~~---~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l-~~~~~~vrk~a~~~l~~l~~ 199 (1219)
.+ ...+.+...+.....--.+-+++...+. +...+++.+...+ ++....++.-|+.++..+..
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 11 1111111334444434455666655554 6677888888888 67677889999999988883
No 284
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=67.43 E-value=35 Score=32.06 Aligned_cols=68 Identities=16% Similarity=0.088 Sum_probs=45.7
Q ss_pred cchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHH---HHHh--hccC------CChHHHHHHHHHHHH
Q 000934 965 KLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEIS---SFLM--LIKD------QDRHVRRAAVLALST 1032 (1219)
Q Consensus 965 ~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~---~~l~--~l~D------~~~~vR~~a~~~L~~ 1032 (1219)
.++-.|.+.|.++++.++.-++..++|++..+++.+...++.... .+.. +-.| +...||..|-.++..
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~ 116 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA 116 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence 345567778888899999999999999999998766555444433 3222 1112 234688888776654
No 285
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=67.33 E-value=53 Score=33.10 Aligned_cols=97 Identities=19% Similarity=0.290 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhH---h-------HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHH---HHHH
Q 000934 143 TEIRCECLDILCDVLHKFGNLMSN---D-------HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL---LAKA 209 (1219)
Q Consensus 143 ~~v~~~al~~L~~l~~~~g~~l~~---~-------~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~---~~~l 209 (1219)
...+.-+++++..+++..|..+.. + ...+.+.++..+.++...+=.+++..+..+.......+ ++-+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888887761 1 25556677777766667788889998888887665542 4556
Q ss_pred HHHHHHH-hhcCCCChHHHHHHHHHHHHHHH
Q 000934 210 TIEVVRN-LRSKGAKPEMIRTNIQMVGALSR 239 (1219)
Q Consensus 210 ~~~ll~~-l~~~~~~~~~~~~~i~~l~~l~~ 239 (1219)
++.++.. +.........|..+++++..+++
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 6666663 33333223578888999988886
No 286
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=66.69 E-value=2.7e+02 Score=34.66 Aligned_cols=137 Identities=14% Similarity=0.095 Sum_probs=79.9
Q ss_pred chhhhHHHHHHHhhcCCchHHHHHHHHHHHhcCCCCCchhHHHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000934 599 AELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLE-------HVIAELTAFLRKANRALRQATLGTMNSLV 671 (1219)
Q Consensus 599 ~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~-------~~l~~L~~~L~~~~~~lr~~al~~L~~l~ 671 (1219)
|.+-+.+-.|+...+|..|-+++..+|.++...... ...++. ..++.|..+|+..|..+-.++..+|..+.
T Consensus 517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~--~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls 594 (717)
T KOG1048|consen 517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT--WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLS 594 (717)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc--chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhc
Confidence 434444444455567778889999999988743211 133333 34577889999888877778888888876
Q ss_pred HHhCCC--CCcchHHHHHHHHhhhcCC--CChhhhHHHHHHHHHHhhcccCCCchh-HhHhhhhHHHHHHHhhh
Q 000934 672 VAYGDK--IGASAYEVIIVELSTLISD--SDLHMTALALELCCTLMADKRSSPNVG-LAVRNKVLPQALALIKS 740 (1219)
Q Consensus 672 ~~~~~~--l~~~~~~~il~~l~~~l~~--~d~~~~~~al~~l~~l~~~~~~~p~~~-~~~~~~~l~~l~~ll~s 740 (1219)
...-.. +....+.+++..|...-.. .+-.+...++..+..+++. .+... ......=++.+..+.++
T Consensus 595 ~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~---~~~nAkdl~~~~g~~kL~~I~~s 665 (717)
T KOG1048|consen 595 RDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK---NVLNAKDLLEIKGIPKLRLISKS 665 (717)
T ss_pred cCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH---hHHHHHHHHhccChHHHHHHhcc
Confidence 654221 3344556666655444332 2345566777777777753 22221 12223445666665555
No 287
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=65.56 E-value=74 Score=31.72 Aligned_cols=147 Identities=16% Similarity=0.218 Sum_probs=77.0
Q ss_pred HhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhh----HhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCH
Q 000934 128 LTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS----NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD 203 (1219)
Q Consensus 128 l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~----~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~ 203 (1219)
|-|.|+..++. .+++...+.+|+.++.+....+- ..++.+.+.++..-.. --.+|+..+..|.....+
T Consensus 4 ikplLIsCL~~----q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~----e~~kA~~IF~~L~~~l~~ 75 (174)
T PF04510_consen 4 IKPLLISCLTM----QETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSEN----EPVKAFHIFICLPMPLYG 75 (174)
T ss_pred hHHHHHHHHHh----hcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhcc----chHHHHHHHHhCCchhhh
Confidence 44566666654 34556667788888887776553 3467777776653322 126788888877733344
Q ss_pred HH----HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH---h--hhhhccchhhhHHHHHHhhhcc--CCCChHHHH
Q 000934 204 DL----LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA---V--GYRFGPHLGDTVPVLIDYCTSA--SENDEELRE 272 (1219)
Q Consensus 204 ~~----~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~---~--~~~~~~~l~~iip~ll~~~~~~--~~~d~elre 272 (1219)
+. ++.+.+.+.+.|.+|.. .+...=.+.+.++++.. . +.+ ...+.+++|.+++.+..- ...+.+.-.
T Consensus 76 efl~~~~~~L~~~~~~~L~~p~~-~d~~~W~LAl~~a~~~~Iql~e~~~~-~~~vk~L~~~mv~Sv~elV~~g~E~~~l~ 153 (174)
T PF04510_consen 76 EFLIPFMENLLPEISKVLLPPEE-VDVEDWVLALTGAVCMAIQLLESSMR-VDLVKELLPKMVKSVKELVERGMEVGFLR 153 (174)
T ss_pred hHHHHHHHHHHHHHHHHcCCchh-ccHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 43 45666667777776643 12221112222222221 1 111 235566666665544310 012224444
Q ss_pred HHHHHHHHHHHh
Q 000934 273 YSLQALESFLLR 284 (1219)
Q Consensus 273 ~al~~l~~l~~~ 284 (1219)
.+++-++.++..
T Consensus 154 rgl~~~e~~v~~ 165 (174)
T PF04510_consen 154 RGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHH
Confidence 566667766654
No 288
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=64.96 E-value=15 Score=31.28 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=32.9
Q ss_pred cCCCcchhhhhHHHHHHHhccccC--------CCChHHHHHHHHHHHHhc
Q 000934 14 TGKDKDFRYMATSDLLNELNKESF--------KADADLEVKLSNIVVQQL 55 (1219)
Q Consensus 14 ~~~d~d~R~mAl~dL~~~l~~~~~--------~~~~~~~~~v~~~ll~~L 55 (1219)
.+.|+.+|++|+.-|++.+.+.+- .++++.-..|...++..|
T Consensus 26 ~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l 75 (77)
T PF03810_consen 26 NSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLL 75 (77)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHH
Confidence 456899999999999999998766 667666666777776654
No 289
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=64.83 E-value=28 Score=32.82 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHHHHHHHhhc
Q 000934 639 CVLEHVIAELTAFLR-KANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 715 (1219)
Q Consensus 639 ~~l~~~l~~L~~~L~-~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~~~ 715 (1219)
.+++.++|.+...+. +....+|.+++..++.++...+ +.++.++.++..+.......+. ...++.++..+++.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 467788888888888 6677899999999999987753 6777778888877776655444 35677788888764
No 290
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=64.57 E-value=2.1e+02 Score=32.74 Aligned_cols=165 Identities=17% Similarity=0.200 Sum_probs=102.1
Q ss_pred HHHHHHHhc-CCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcc--------------chhhHHHHHHH
Q 000934 6 MAAILEKIT-GKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVA--------------GDVSGLAVKCL 70 (1219)
Q Consensus 6 l~~ll~~~~-~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~--------------~eVq~~A~k~l 70 (1219)
+.-+++.++ ..|.++=.+-+.-|..-|++..+-.+.. .+++.+.|.+.+.|++ .|++.....+|
T Consensus 143 ~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~-I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~L 221 (356)
T PF03542_consen 143 FSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGAD-IDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPVL 221 (356)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCc-HHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHHH
Confidence 344555553 5677777777778877777655332222 6666667766655432 37788888899
Q ss_pred HHHhh---hcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHH
Q 000934 71 APLVK---KVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRC 147 (1219)
Q Consensus 71 ~~l~~---~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~ 147 (1219)
..|+. .+......+++..+...+.++. -..+-.||--+|-++|. .+.+.+|.++..|.+-.....+..
T Consensus 222 s~LisYh~~~~k~~qd~iV~~l~~GL~s~~---a~~CI~aLtic~~EmP~------s~~k~L~~iL~kLs~i~tt~~~Ai 292 (356)
T PF03542_consen 222 SALISYHSHFSKQEQDEIVRALESGLGSKT---AKPCIHALTICCYEMPD------SMKKLLPSILLKLSKISTTPNMAI 292 (356)
T ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHhhccchhhHH
Confidence 98885 3555667789999888875532 12345567667777764 245556666666655333456666
Q ss_pred HHHHHHHHHHHHhh-hh----hhHhHHHHHHHHhhhhcC
Q 000934 148 ECLDILCDVLHKFG-NL----MSNDHERLLSALLPQLSA 181 (1219)
Q Consensus 148 ~al~~L~~l~~~~g-~~----l~~~~~~l~~~ll~~l~~ 181 (1219)
..++.|+.+.+ .+ .. -.+++..+..+.++.++.
T Consensus 293 ~ILEFLs~L~~-lP~~ly~nF~~~~y~~VF~I~l~Y~~~ 330 (356)
T PF03542_consen 293 HILEFLSSLSR-LPNHLYSNFTEDEYKRVFAIALPYTQP 330 (356)
T ss_pred HHHHHHHHHhh-CcHHHhcCCCHHHHHHHHHHHhhccch
Confidence 77777776653 22 21 224566666677776654
No 291
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=63.95 E-value=73 Score=30.02 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=56.8
Q ss_pred hHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHHHhhhcccccceeeeccCceeecccChhHHHH
Q 000934 1005 FPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKA 1084 (1219)
Q Consensus 1005 ~~~i~~~l~~l~D~~~~vR~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~elir~v~mgpfkh~~Ddgle~Rk~ 1084 (1219)
..++.-+++.|+|.++.|+.=++..|-.+.++.+..+...+..-...+-.-..-+ -..+|+ |-.+-|-.+|..
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~------g~~Dp~-~Gd~~~~~VR~~ 109 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYK------GPPDPL-KGDSLNEKVREE 109 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcC------CCCCcc-cCcchhHHHHHH
Confidence 3455666778999999999999999999999999888777755444332211100 001121 234558889999
Q ss_pred HHHHHHHHHh
Q 000934 1085 AFECVDTLLD 1094 (1219)
Q Consensus 1085 a~e~l~~ll~ 1094 (1219)
|-|++..+..
T Consensus 110 A~El~~~if~ 119 (122)
T cd03572 110 AQELIKAIFS 119 (122)
T ss_pred HHHHHHHHhc
Confidence 9999887754
No 292
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=63.76 E-value=13 Score=39.15 Aligned_cols=91 Identities=18% Similarity=0.242 Sum_probs=65.1
Q ss_pred HHHHHHhhhhccCcccchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHhhccCCChHHHHHHHHH
Q 000934 950 VVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLA 1029 (1219)
Q Consensus 950 ~~ae~LG~l~~~~p~~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~D~~~~vR~~a~~~ 1029 (1219)
.+..++|.+...+ +.+.+.+.+.+.++++..|.+++..+-..+.+ .....++..+-..+.|++.-||.+.--+
T Consensus 106 ~~~~~~~~~~~~~-~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~ 178 (213)
T PF08713_consen 106 LCSKLLGPLLKKH-PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWA 178 (213)
T ss_dssp HTHHHHHHHHHHH-GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4456667765544 56778899999999999887666555444443 2233444445556789999999999999
Q ss_pred HHHHHhcCchhhhchhhh
Q 000934 1030 LSTFAHNKPNLIKGLLPE 1047 (1219)
Q Consensus 1030 L~~~~~~~p~~i~~~l~~ 1047 (1219)
|..+....|+.+.+++.+
T Consensus 179 L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 179 LREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHH
Confidence 999999999999988866
No 293
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=63.58 E-value=1.9e+02 Score=30.03 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=49.8
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcc
Q 000934 516 PVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD 595 (1219)
Q Consensus 516 ~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~ 595 (1219)
.+...++-++...-.+.+.+++.++..+++ ...+++.+++..+-+.-. +.+-+.|..+=.|+|..+..+|.
T Consensus 4 ~~e~~L~~~y~~aw~~vl~v~s~lf~~lg~-------~~~~~l~~~L~~l~~lr~--~~~f~~~~~~e~~lgaAi~amGp 74 (198)
T PF08161_consen 4 TLESLLSYRYQHAWPEVLNVLSALFEKLGE-------RSSPLLKPILKTLGDLRE--SEDFSFRKELEQVLGAAIRAMGP 74 (198)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHhh-------hccHHHHHHHHHHHHHHc--CCCcchHHHHHHHHHHHHHHCCH
Confidence 344455445556777889999999998865 355777777766655432 23467788899999999988874
No 294
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=63.56 E-value=30 Score=34.44 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=70.5
Q ss_pred HHHhcc--CccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHH--H
Q 000934 51 VVQQLD--DVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH--T 126 (1219)
Q Consensus 51 ll~~L~--D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~--~ 126 (1219)
+++.|. ...++||.+|.-|+..+...-+++.-+.+-+.+-..+.++..+..-.+..++.++.-..| .....+. +
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~--dv~~~l~~~e 85 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPP--DVGSELFLSE 85 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTH--HHHHHHCCTT
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCH--HHHHHHHhhh
Confidence 444444 357899999999999887544444333333444444433333323344444444443222 2222221 2
Q ss_pred hHhHHHHHhhhccCCChhHHHHHHHHHHHHHHH--hhhhhhHhHHHHHHHHhhhhc-CChHH-HHHHHHHHHHH
Q 000934 127 SLTPQLTKGITLKDMNTEIRCECLDILCDVLHK--FGNLMSNDHERLLSALLPQLS-ANQAS-VRKKSVSCIAS 196 (1219)
Q Consensus 127 ~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~--~g~~l~~~~~~l~~~ll~~l~-~~~~~-vrk~a~~~l~~ 196 (1219)
.+++.++..+.....+..++..++++|+.-+.. .-..+. ..-.+++-..++ +++.. +|-+|..+|..
T Consensus 86 g~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~---~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 86 GFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFIS---KNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp THHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH---HHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH---HHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 334445544442222678888888888754421 111222 233344444453 33345 78888887754
No 295
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=63.52 E-value=2e+02 Score=31.24 Aligned_cols=163 Identities=20% Similarity=0.185 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHHHHHHhh-------hhhh-HhHHHHHHHHhhhhcCC-hHHHHHHHHHHHHHHHhhCC---HH----HH
Q 000934 143 TEIRCECLDILCDVLHKFG-------NLMS-NDHERLLSALLPQLSAN-QASVRKKSVSCIASLASSLS---DD----LL 206 (1219)
Q Consensus 143 ~~v~~~al~~L~~l~~~~g-------~~l~-~~~~~l~~~ll~~l~~~-~~~vrk~a~~~l~~l~~~~~---~~----~~ 206 (1219)
+..-.++..+|+.++.... ..+. +....+-+.++..|..- +...=.++..++..++..+- +. +-
T Consensus 61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP 140 (255)
T PF10350_consen 61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELP 140 (255)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhH
Confidence 4444556666666665431 1122 23445555555554321 22333344444555544332 11 23
Q ss_pred HHHHHHHHHHhhcC-CC-ChHHHHH--HHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCC-----ChHHHHHHHHH
Q 000934 207 AKATIEVVRNLRSK-GA-KPEMIRT--NIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASEN-----DEELREYSLQA 277 (1219)
Q Consensus 207 ~~l~~~ll~~l~~~-~~-~~~~~~~--~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~-----d~elre~al~~ 277 (1219)
..-+..++..+... .. ..-+||. .-.++.+|....+..-.+.++..|..+++..+..... .+.-+=.|+..
T Consensus 141 ~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNi 220 (255)
T PF10350_consen 141 EEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNI 220 (255)
T ss_pred HHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHH
Confidence 34555566666555 11 1135554 3566677777776543478888999999888753211 12355567777
Q ss_pred HHHHHH--hCchhhcccHHHHHHHHHHhcc
Q 000934 278 LESFLL--RCPRDISSYCDEILHLTLEYLS 305 (1219)
Q Consensus 278 l~~l~~--~~~~~~~~~l~~ii~~~l~~l~ 305 (1219)
+..+.+ .....+.+|+.+.+.+.++.+.
T Consensus 221 Lr~if~ds~L~~~~~~yi~~~l~lai~~f~ 250 (255)
T PF10350_consen 221 LRAIFRDSKLSEDVSPYIEDALILAIKGFS 250 (255)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHhCC
Confidence 777765 3446788999999998888764
No 296
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=62.62 E-value=2.9e+02 Score=31.90 Aligned_cols=242 Identities=16% Similarity=0.179 Sum_probs=115.3
Q ss_pred HHHHHHHhcccc-CCCChHHHHHHHHHHHH-hccCccchhhHHHHHHHHHHhhhcChhhHHHHHH----HHH-HHhcC--
Q 000934 25 TSDLLNELNKES-FKADADLEVKLSNIVVQ-QLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTD----KLC-IKLLN-- 95 (1219)
Q Consensus 25 l~dL~~~l~~~~-~~~~~~~~~~v~~~ll~-~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~----~L~-~~~~~-- 95 (1219)
+|+|.+.+++.. .+ .+-....+...+.. +|.|. .+||..|.+++=-++.. +..+..+.. .++ ..+..
T Consensus 4 ~N~Lv~l~~~~p~l~-~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~ 79 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLK-YDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDN 79 (371)
T ss_pred HHHHHHHHHhCchhh-hhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccC
Confidence 477777666532 22 22334445555554 44555 99999999988766642 222222221 122 12222
Q ss_pred CCcchhhHHHHHHHHHHhhc-CChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhh--HhHHHHH
Q 000934 96 GKDQHRDIASIALKTIIAEV-TTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS--NDHERLL 172 (1219)
Q Consensus 96 ~~~~~r~~a~~aL~~~i~~~-~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~--~~~~~l~ 172 (1219)
.++..|.-|..-.|++++-- +...+...+.+.++ ...++. ++..+.-++++|.+++-..+..+. .-...++
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralv----aiae~~--~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~ 153 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALV----AIAEHE--DDRLRRICLETLCELALLNPELVAECGGIRVLL 153 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHH----HHHhCC--chHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHH
Confidence 22335665555556665421 11122233344333 323332 578999999999999877666542 1233333
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhhCCHH-HH--HHHHHHHHHHhhcC-----CCCh--HHHHHHHHHHHHHHHHhh
Q 000934 173 SALLPQLSANQASVRKKSVSCIASLASSLSDD-LL--AKATIEVVRNLRSK-----GAKP--EMIRTNIQMVGALSRAVG 242 (1219)
Q Consensus 173 ~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~--~~l~~~ll~~l~~~-----~~~~--~~~~~~i~~l~~l~~~~~ 242 (1219)
+.+ .++...+-...+.++-.+...-... ++ ..-++.++..+.+. ..+. +....+..++..+.++.+
T Consensus 154 ~~l----~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~ 229 (371)
T PF14664_consen 154 RAL----IDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP 229 (371)
T ss_pred HHH----HhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC
Confidence 333 3322223222222222222111110 11 11223333333332 1112 244567788888888766
Q ss_pred hhhccchh--hhHHHHHHhhhccCCCChHHHHHHHHHHHHHHH
Q 000934 243 YRFGPHLG--DTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1219)
Q Consensus 243 ~~~~~~l~--~iip~ll~~~~~~~~~d~elre~al~~l~~l~~ 283 (1219)
.-+.=..+ .-+..+++.+. -+.+++|+..+..|-.+.+
T Consensus 230 GLl~l~~~~~~~lksLv~~L~---~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 230 GLLYLSMNDFRGLKSLVDSLR---LPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred ceeeeecCCchHHHHHHHHHc---CCCHHHHHHHHHHHHHHHC
Confidence 42211111 34555556665 3567788877666544443
No 297
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=62.44 E-value=69 Score=30.80 Aligned_cols=72 Identities=11% Similarity=0.181 Sum_probs=43.1
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccch--hhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCc
Q 000934 212 EVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1219)
Q Consensus 212 ~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1219)
.+...+.+++ +.+...++.++.++.+.||.+|...+ ...+..+...+... ...+.+++-++..+..|...++
T Consensus 41 ~l~krl~~~n--~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~-~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 41 LLKKRLNNKN--PHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPK-YPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHcCCC--HHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHHHHHHc
Confidence 3444454433 24455566777777777766665544 23444444544432 2334599999999999988765
No 298
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=62.40 E-value=71 Score=31.14 Aligned_cols=74 Identities=18% Similarity=0.297 Sum_probs=46.1
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccch--hhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchh
Q 000934 211 IEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD 288 (1219)
Q Consensus 211 ~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~ 288 (1219)
..+...+.+.+ +.+...++.++.++++.||.+|...+ ...+..+.+.+.. ..+..+++-++..+..|...++..
T Consensus 44 ral~krl~~~n--~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 44 RALKKRLLSKN--PNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT--TKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHcCCC--hHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc--cCCHHHHHHHHHHHHHHHHHhCCC
Confidence 33444444433 23455567777777777776665543 3344444444442 367889999999999998877643
No 299
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=62.22 E-value=2.4e+02 Score=30.76 Aligned_cols=212 Identities=15% Similarity=0.113 Sum_probs=107.9
Q ss_pred hhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcc--------CCCCCCc-ccHHHHHHHHHHHhhhcCCCHHHHHHH
Q 000934 512 ALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVE--------GLGFDFK-PYVQPIYNAIMSRLTNQDQDQEVKECA 582 (1219)
Q Consensus 512 ~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~--------~~~~~~~-~~l~~l~~~ll~~l~~~d~d~~vr~~A 582 (1219)
++.=..+++++..+...-.+|+..+..++..+.-.+. ..+.... .-.+.+-+.++..+....+ -+.+
T Consensus 7 QlFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t----~e~t 82 (262)
T PF14225_consen 7 QLFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSST----YELT 82 (262)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCc----HHHH
Confidence 3333444555555555556666666666654322110 0122232 3455566667777754432 4677
Q ss_pred HHHHHHHHHhhccc-ccc-------hhhhHHHHHHHhhcCCc------hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 000934 583 ISCMGLVISTFGDN-LGA-------ELPACLPVLVDRMGNEI------TRLTAVKAFAVIAASPLHIDLTCVLEHVIAEL 648 (1219)
Q Consensus 583 i~alg~l~~~~g~~-l~~-------~~~~~l~~L~~~L~~e~------~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L 648 (1219)
+..+..+.....+. +.+ .+-..+|.++..+.++. ....+...|..++...... .+-..+
T Consensus 83 l~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~-------~La~il 155 (262)
T PF14225_consen 83 LRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLP-------NLARIL 155 (262)
T ss_pred HHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCc-------cHHHHH
Confidence 88888777655332 211 23455666666665544 1234456666666432111 122223
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHHHHHHHhhcccCCCchhHhHhh
Q 000934 649 TAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRN 728 (1219)
Q Consensus 649 ~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~ 728 (1219)
..|.++..+....-.-.....|-..+.+ +.--.++..+..++..+-..+...++.++..++...+. ......
T Consensus 156 ~~ya~~~fr~~~dfl~~v~~~l~~~f~P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~----~~~~~~ 227 (262)
T PF14225_consen 156 SSYAKGRFRDKDDFLSQVVSYLREAFFP----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDM----RSPHGA 227 (262)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhCc----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccC----CCCcch
Confidence 3333333322221111222233333322 22344555566777666667777888888888875321 123667
Q ss_pred hhHHHHHHHhhhcc
Q 000934 729 KVLPQALALIKSSL 742 (1219)
Q Consensus 729 ~~l~~l~~ll~s~~ 742 (1219)
.++..+.++++++.
T Consensus 228 dlispllrlL~t~~ 241 (262)
T PF14225_consen 228 DLISPLLRLLQTDL 241 (262)
T ss_pred HHHHHHHHHhCCcc
Confidence 78888888886554
No 300
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=61.99 E-value=1.2e+02 Score=38.07 Aligned_cols=139 Identities=16% Similarity=0.141 Sum_probs=89.2
Q ss_pred HHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHH
Q 000934 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT 126 (1219)
Q Consensus 47 v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~ 126 (1219)
.+..|+..|++++-.|-..+-+.+-.+...-++ .-++..|+.+..+.++. .++.-++ .+. .+.-+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~y~~~t~s~------~~~~il~-~~~-----~P~~K 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDRE---PWLVNGLVDYYLSTNSQ------RALEILV-GVQ-----EPHDK 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccch---HHHHHHHHHHHhhcCcH------HHHHHHH-hcC-----CccHH
Confidence 456678888888877777777666666554333 25677788776655433 2222223 211 22234
Q ss_pred hHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHh-HHHHHHHHhhhhcC-ChHHHHHHHHHHHHHHHhhCCHH
Q 000934 127 SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSND-HERLLSALLPQLSA-NQASVRKKSVSCIASLASSLSDD 204 (1219)
Q Consensus 127 ~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~-~~~l~~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~~~ 204 (1219)
.++..|-+.+. .+..|..++..|+.++.+-+..+..- ...+++.++.+|.. .+..+--.|+.+|..|.+.++..
T Consensus 70 ~~~~~l~~~~~----~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~ 145 (668)
T PF04388_consen 70 HLFDKLNDYFV----KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSS 145 (668)
T ss_pred HHHHHHHHHHc----CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccch
Confidence 44445544444 35789999999999999877765432 23556666666654 45578888999999999888765
No 301
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=61.18 E-value=7.4 Score=25.54 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=17.0
Q ss_pred HhHHHHHHHHhhhhcCcccchHHHHHHh
Q 000934 869 IKSAASYALGNIAVGNLSKFLPFILDQI 896 (1219)
Q Consensus 869 vR~aAa~aLG~l~~~~~~~~lp~il~~l 896 (1219)
||.+|+.+||.+.. +..+|.+++.+
T Consensus 1 VR~~Aa~aLg~igd---~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGD---PRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-S---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC---HHHHHHHHHHh
Confidence 78999999998774 34555555544
No 302
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=60.87 E-value=3.9e+02 Score=32.75 Aligned_cols=609 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcC----------
Q 000934 9 ILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS---------- 78 (1219)
Q Consensus 9 ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~---------- 78 (1219)
+.|++.|..|=.|+-|+.-+.+...-+.... ..-.++.+.+.+.|.|.+.-||+.|+|.+..|.-+=|
T Consensus 351 l~ERl~D~~py~RtKalqv~~kifdl~sk~~--~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~~h~~~l~ 428 (1128)
T COG5098 351 LVERLSDTYPYTRTKALQVLEKIFDLNSKTV--GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFASEHGSQLR 428 (1128)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHhCccccc--chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhhhccchhh
Q ss_pred -----------hhhHHHHHHHHHHHhcCCCcchh-------------------------------------hHHHHHHHH
Q 000934 79 -----------EPRVVEMTDKLCIKLLNGKDQHR-------------------------------------DIASIALKT 110 (1219)
Q Consensus 79 -----------~~~~~~l~~~L~~~~~~~~~~~r-------------------------------------~~a~~aL~~ 110 (1219)
+++.+.+-+.+-..+.++..++. ---....+.
T Consensus 429 ~~~wek~L~~~E~qlNslk~~~qe~l~D~E~Eveqd~~q~~t~le~~~n~~~es~ien~ve~ina~~t~~lmKl~l~~~y 508 (1128)
T COG5098 429 LTLWEKNLGSAENQLNSLKSGLQETLCDGEKEVEQDEGQCRTELEGSFNKSAESRIENEVENINATNTSVLMKLKLMIVY 508 (1128)
T ss_pred hHHHHhhcchhHhHhhccchhhhccccchHHhhhhhhhhhhhhhccccccchhhhhhhhhhccccccHHHHHHHHHHHHH
Q ss_pred HHhhcCChhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhh-HhHHHHHHHHhhhhcCChH-HHHH
Q 000934 111 IIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS-NDHERLLSALLPQLSANQA-SVRK 188 (1219)
Q Consensus 111 ~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~-~~~~~l~~~ll~~l~~~~~-~vrk 188 (1219)
.-.............+.|...|+. .+..-..+++| +.-++..|+-..+ .+...++..++..=.+++. .+.-
T Consensus 509 Y~da~qfidi~~~~~~~Is~LLf~------knk~EV~Esmd-F~vlc~~f~I~~S~~~ikkm~hLvW~kgt~deg~si~~ 581 (1128)
T COG5098 509 YEDANQFIDIMKEIQDNISTLLFG------KNKTEVNESMD-FIVLCFYFRIDGSREAIKKMFHLVWTKGTDDEGTSIEL 581 (1128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc------CchHHHHHHHH-HHHHHHHhcccchHHHHHHHHHhheecccCCCCcchhH
Q ss_pred HHHHHHHHHHhhCCHH--HHHH---------------------------------------HHHHHHHHhhcCCCC--hH
Q 000934 189 KSVSCIASLASSLSDD--LLAK---------------------------------------ATIEVVRNLRSKGAK--PE 225 (1219)
Q Consensus 189 ~a~~~l~~l~~~~~~~--~~~~---------------------------------------l~~~ll~~l~~~~~~--~~ 225 (1219)
..+.|-..+...-++. .+.. ++..+++...-+.-+ -.
T Consensus 582 hvlscyk~lf~~~p~ns~~~e~a~~iarnlinls~~aslaeLssleqll~mm~~~~yid~~vIs~Lw~~ys~Qk~d~s~~ 661 (1128)
T COG5098 582 HVLSCYKLLFQMKPNNSSLFEFAKEIARNLINLSFEASLAELSSLEQLLGMMYARRYIDKTVISELWSMYSLQKFDFSLL 661 (1128)
T ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhccchhHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCc--hhhcccHHHHHHHHHHh
Q 000934 226 MIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP--RDISSYCDEILHLTLEY 303 (1219)
Q Consensus 226 ~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~--~~~~~~l~~ii~~~l~~ 303 (1219)
.++..+-.+|-++-..-.-...-+..++.+-++.-+ ..|.-+..+..-+...+.+... +++..-+...+.--+..
T Consensus 662 q~~gsii~iGml~l~d~~~~l~gl~~ll~iglg~~g---l~dl~L~rY~cia~~Rv~~~~~~~~~In~~l~~~l~kkl~~ 738 (1128)
T COG5098 662 QASGSIIHIGMLLLVDMFHSLVGLSTLLLIGLGVEG---LLDLMLSRYKCIAQIRVRQRVKFDDEINEVLAKNLAKKLEH 738 (1128)
T ss_pred hhccceEEecchhhhhhHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHHHHHHHHhccccHhhhHHHHHHHHHHHHH
Q ss_pred cccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccc
Q 000934 304 LSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKERE 383 (1219)
Q Consensus 304 l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~ 383 (1219)
+-.||.+ +..|-.-.--++-.--.++..||.+..-+-.+... ..|..++
T Consensus 739 ~vv~~t~-----------------------------s~ey~~~~eqa~sai~~~~k~pD~l~t~li~~~t~--~~fgkp~ 787 (1128)
T COG5098 739 QVVDVTV-----------------------------STEYSISTEQAKSAIMLLEKLPDMLRTSLIAISTV--GCFGKPH 787 (1128)
T ss_pred Hhhcccc-----------------------------cceeccchHHHHHHHHHHHhCchHHHHHHHHHHHH--HhcCCCc
Q ss_pred hhHHHHHHHHHHHHHHHhc---------------------ccCccccCC-------CCCChhHHHHHHHHHHHHHHHHHh
Q 000934 384 ENVKMDVFNTFIELVRQTG---------------------NVTKGQIDN-------NELNPRWLLKQEVSKIVKSINRQL 435 (1219)
Q Consensus 384 ~~Vr~~~~~~l~~l~~~~~---------------------~~~~~~~~~-------~~~~~~~~L~~~~p~lv~~l~~~L 435 (1219)
|+=-..-+.-...+++..+ ..++++.+. ....+...-..--. .....
T Consensus 788 eeds~~~le~~er~v~l~~l~f~Vg~vaIk~lVy~e~ceaefkrrki~ae~~~~v~n~~~~~nns~qd~g-----e~~~I 862 (1128)
T COG5098 788 EEDSMQYLEELERLVKLNRLKFKVGKVAIKPLVYEERCEAEFKRRKISAELEENVDNDDSILNNSAQDRG-----ESSRI 862 (1128)
T ss_pred chhHHHHHHHHHHHHhhhceeeEecceeehHHHHHHHHhhHHhhhhhHHHHHhhccCCCCcCccchhhcc-----hhhhc
Q ss_pred cccCccchhhHHHHHHHHHHHhcc-hhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhH
Q 000934 436 REKSIKTKQVGAFSVLRELVVVLP-DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALS 514 (1219)
Q Consensus 436 ~~~~~~~r~~~~~~~L~~L~~~~~-~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~ 514 (1219)
.+.+...- ..++.++.+=-.-.+ ..+-..+.+++..+...-+.-++..-.+.+.+.+..-++-+. .|...=+
T Consensus 863 ggtsEddf-~da~~fikE~ElLyGeksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~------~fc~ehl 935 (1128)
T COG5098 863 GGTSEDDF-VDAFFFIKEKELLYGEKSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSF------EFCSEHL 935 (1128)
T ss_pred cCCCHHHH-HHHHHHHHHHHHhhchhHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhH------HHHHHHH
Q ss_pred HHHHHHhc-CCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhh
Q 000934 515 SPVLAAVG-ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTF 593 (1219)
Q Consensus 515 p~l~~~l~-d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~ 593 (1219)
|.++..+. .+.|.+++.|+-.++++.-+ |...++..-..+..+|. |.+..||..++..+..++-..
T Consensus 936 pllIt~mek~p~P~IR~NaVvglgD~~vc-----------fN~~~de~t~yLyrrL~--De~~~V~rtclmti~fLilag 1002 (1128)
T COG5098 936 PLLITSMEKHPIPRIRANAVVGLGDFLVC-----------FNTTADEHTHYLYRRLG--DEDADVRRTCLMTIHFLILAG 1002 (1128)
T ss_pred HHHHHHHhhCCCcceeccceeecccccee-----------hhhhhHHHHHHHHHHhc--chhhHHHHHHHHHHHHHHHcc
Q ss_pred cccccchhhhHHHHHHHhhcCCchHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000934 594 GDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVA 673 (1219)
Q Consensus 594 g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~ 673 (1219)
.-.++.+ ++.+...|.+| ..-+.+....+...+.+.+......-+..+..+...
T Consensus 1003 q~KVKGq----lg~ma~~L~de----------------------da~Isdmar~fft~~a~KdNt~yn~fidifs~ls~~ 1056 (1128)
T COG5098 1003 QLKVKGQ----LGKMALLLTDE----------------------DAEISDMARHFFTQIAKKDNTMYNGFIDIFSTLSSD 1056 (1128)
T ss_pred ceeeccc----hhhhHhhccCC----------------------cchHHHHHHHHHHHHHhcccchhhhhHHHHHHcCch
Q ss_pred hCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHHHHHHHhh
Q 000934 674 YGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMA 714 (1219)
Q Consensus 674 ~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~~l~~ 714 (1219)
+.....-+..++..+..++.. .+|..++.=...+++.+
T Consensus 1057 --ae~g~e~fk~II~FLt~fI~k-erh~kql~E~L~~rl~r 1094 (1128)
T COG5098 1057 --AENGQEPFKLIIGFLTDFISK-ERHQKQLKESLFLRLLR 1094 (1128)
T ss_pred --hhcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
No 303
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=60.55 E-value=1.4e+02 Score=28.69 Aligned_cols=94 Identities=13% Similarity=0.181 Sum_probs=66.2
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHH-----HHHHHHHHHH
Q 000934 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL-----AKATIEVVRN 216 (1219)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~-----~~l~~~ll~~ 216 (1219)
++..-.+.||.+..- ...-...++.+..-+.++++.++.+|+..|..++..++..+. ...+..+...
T Consensus 17 D~~~il~icd~I~~~--------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l 88 (133)
T cd03561 17 DWALNLELCDLINLK--------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKI 88 (133)
T ss_pred cHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHH
Confidence 566666666665421 122355677778888899999999999999999999988742 2455566666
Q ss_pred hhcC-CCChHHHHHHHHHHHHHHHHhhh
Q 000934 217 LRSK-GAKPEMIRTNIQMVGALSRAVGY 243 (1219)
Q Consensus 217 l~~~-~~~~~~~~~~i~~l~~l~~~~~~ 243 (1219)
+.+. ..+..++..+++++.......+.
T Consensus 89 ~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 89 AKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 6553 34457888888888888776653
No 304
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=60.22 E-value=23 Score=33.04 Aligned_cols=82 Identities=22% Similarity=0.307 Sum_probs=46.9
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh---hhccchhhhHHHHHHhhhcc-CCCChHHHHHHHHHHHHHHHhCc
Q 000934 211 IEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY---RFGPHLGDTVPVLIDYCTSA-SENDEELREYSLQALESFLLRCP 286 (1219)
Q Consensus 211 ~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~---~~~~~l~~iip~ll~~~~~~-~~~d~elre~al~~l~~l~~~~~ 286 (1219)
..++..|...+.+.+..+.++.....+.+.-+. .+..|..+++..++..-+.- .++.++.|. +++-+++..+|
T Consensus 6 rDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~---~alval~v~~P 82 (114)
T PF10193_consen 6 RDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQ---NALVALVVAAP 82 (114)
T ss_dssp HHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHH---HHHHHHHHHSG
T ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHH---HHHHHHHHHhh
Confidence 345555654432245678899999999998776 67777777777777643311 134556764 45666777889
Q ss_pred hhhcccHHH
Q 000934 287 RDISSYCDE 295 (1219)
Q Consensus 287 ~~~~~~l~~ 295 (1219)
..+.||+-+
T Consensus 83 ~~~~~~L~~ 91 (114)
T PF10193_consen 83 EKVAPYLTE 91 (114)
T ss_dssp GGHHH-HHH
T ss_pred HHHHHHHHH
Confidence 888777644
No 305
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=59.24 E-value=1e+02 Score=29.95 Aligned_cols=78 Identities=12% Similarity=0.165 Sum_probs=48.9
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccch--hhhHHH-HHHhhhccCCCChHHHHHHHHHHHHHHHhC
Q 000934 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPV-LIDYCTSASENDEELREYSLQALESFLLRC 285 (1219)
Q Consensus 209 l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~-ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1219)
.+..+...+.... ++.+...++.++.++++.||.+|...+ ...+.- +.+.+......+.++++-+++.+..|...+
T Consensus 39 a~ralkkRl~~~~-n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNK-NHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 3444445554322 234556678888889998888877544 233443 444444221245689999999999999877
Q ss_pred ch
Q 000934 286 PR 287 (1219)
Q Consensus 286 ~~ 287 (1219)
+.
T Consensus 118 ~~ 119 (141)
T cd03565 118 RG 119 (141)
T ss_pred CC
Confidence 64
No 306
>COG5138 Uncharacterized conserved protein [Function unknown]
Probab=58.39 E-value=42 Score=31.68 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=44.8
Q ss_pred HHHHhhCchhHHHhHHHhhHHHHhhhcccCCcchhhhhhhhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHh
Q 000934 1129 SKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEIS 1204 (1219)
Q Consensus 1129 ~~l~~~~p~~~~~~l~~l~~~l~~~l~~k~k~~~~kqe~e~~~e~~rs~lr~~~~l~~~~~~~~~~~~~~~~~~~~ 1204 (1219)
..|++..|..+.+|...+.. +-|+.|=+-.+-.|.++|.++.-|+.++.+ +..|++|..|+.
T Consensus 105 ~sLv~~~~e~l~~Ra~~~~~---ASLn~~g~~s~nSqfv~~Ld~~Ek~i~~~S-----------h~~~~~~~~w~~ 166 (168)
T COG5138 105 GSLVAGLPEFLYERAGDYSS---ASLNLKGTFSENSQFVWRLDMVEKSIVVGS-----------HRRFQRFCAWLV 166 (168)
T ss_pred chHhhhhHHHHHHHHHhhhc---cccCcccccccccHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHh
Confidence 45667777777777776665 335544333334789999999999999876 678999999965
No 307
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=57.46 E-value=61 Score=28.42 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 000934 208 KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALE 279 (1219)
Q Consensus 208 ~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~ 279 (1219)
.++..+...+.+.. +.++|+..++++..+....+..+..--+.++..+-.... ++++++-..|+++++
T Consensus 17 ~fL~Pf~~i~~~~~-~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~---~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNP-SIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAK---DNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHh---CCCccHHHHHHHHHh
Confidence 34444444444443 358999999999999999999888888888888777666 467778777877664
No 308
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=56.36 E-value=4.1e+02 Score=31.58 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=53.7
Q ss_pred cchhhHHHHHHHHHHHhcchhhhhhhhhhhH-hHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHH
Q 000934 441 KTKQVGAFSVLRELVVVLPDCLADHIGSLIP-GIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLA 519 (1219)
Q Consensus 441 ~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~-~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~ 519 (1219)
+.| ..+..+|+.++...+.. .+..+.. .+...|+.++ ..-|.-+...+...+.......-.+..+.+.+.+..
T Consensus 102 r~R-i~aA~ALG~l~~~~~~~---~~~~~~~~~L~~~L~S~s--a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 102 RAR-IAAAKALGLLLSYWPES---SLQEIFQPLLLPYLNSPS--ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHH-HHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 578 88999999998876432 2222332 3556666544 234555566666666554322222223556666666
Q ss_pred HhcCC---ch--------HHHHHHHHHHHHHHHh
Q 000934 520 AVGER---YY--------KVTAEALRVCGELVRV 542 (1219)
Q Consensus 520 ~l~d~---~~--------~v~~~al~~l~~l~~~ 542 (1219)
.+.++ +| +++.++-..+..+...
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~ 209 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLATFRDV 209 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66532 22 4666666666666554
No 309
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.46 E-value=3.7e+02 Score=36.59 Aligned_cols=123 Identities=18% Similarity=0.245 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcccccc-hhhhHHHHHHHhhc-----------CC---chHHHHHHHHHHHhcCCCCCch
Q 000934 573 DQDQEVKECAISCMGLVISTFGDNLGA-ELPACLPVLVDRMG-----------NE---ITRLTAVKAFAVIAASPLHIDL 637 (1219)
Q Consensus 573 d~d~~vr~~Ai~alg~l~~~~g~~l~~-~~~~~l~~L~~~L~-----------~e---~~r~~a~~al~~i~~s~~~~~~ 637 (1219)
+.+.+||-+++..+=.++...|+.+.+ ....++.++.+-.. +| +|-..|++++-.+...- -..+
T Consensus 1185 ~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~-~~~l 1263 (1514)
T KOG0929|consen 1185 DYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQF-FKQL 1263 (1514)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 557899999999999999999987775 55555554443221 11 12234455544443211 1123
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCC
Q 000934 638 TCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISD 696 (1219)
Q Consensus 638 ~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~ 696 (1219)
...++.++..+..+++++|..+-.....||-.++...+..++....+++...+..+...
T Consensus 1264 ~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~ 1322 (1514)
T KOG0929|consen 1264 NNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKT 1322 (1514)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHh
Confidence 56677777778888889999999999999999999999889888788888777665543
No 310
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=55.17 E-value=78 Score=31.49 Aligned_cols=110 Identities=19% Similarity=0.232 Sum_probs=62.9
Q ss_pred hHhHHHHHh-hccCCChHHHHHHHHHHHHHHhcCchhhhchh--hhhhHHHHHhhhcccccceeeeccCceeecccChhH
Q 000934 1005 FPEISSFLM-LIKDQDRHVRRAAVLALSTFAHNKPNLIKGLL--PELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLEL 1081 (1219)
Q Consensus 1005 ~~~i~~~l~-~l~D~~~~vR~~a~~~L~~~~~~~p~~i~~~l--~~llp~l~~~~~~~~elir~v~mgpfkh~~Ddgle~ 1081 (1219)
...+.+|+. .+.+.+.+-...++.++..+-.--|++....+ +.+++.+.....- ..+....
T Consensus 41 ~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~----------------~~~~~~~ 104 (157)
T PF11701_consen 41 KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASR----------------KSKDRKV 104 (157)
T ss_dssp HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-----------------CTS-HHH
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhc----------------ccCCHHH
Confidence 344555554 33444445666677777777777777766655 3366666654431 1223445
Q ss_pred HHHHHHHHHHHHhhh-hcCCCchhchHHHHhcccCC-cch--hHhhHHHHHHHH
Q 000934 1082 RKAAFECVDTLLDSC-LDQVNPSSFIVPYLKSGLED-HYD--VKMPCHLILSKL 1131 (1219)
Q Consensus 1082 Rk~a~e~l~~ll~~~-~~~~~~~~~~~~~~~~gl~D-~~d--i~~l~~~~l~~l 1131 (1219)
.+.+.|++..-.-.- -...-...+. +.+..+++. ++| ||.++...|.||
T Consensus 105 ~~~~lell~aAc~d~~~r~~I~~~~~-~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 105 QKAALELLSAACIDKSCRTFISKNYV-SWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHHHHHHHHHTTSHHHHHCCHHHCH-HHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHH-HHHHHHHccccchHHHHHHHHHHHhcC
Confidence 567777666553221 1123344555 577788854 433 899999998874
No 311
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=54.95 E-value=3.1e+02 Score=31.14 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHhc-cCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHH
Q 000934 485 NLKIEALTFTRLVLS-SHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYN 563 (1219)
Q Consensus 485 ~~~~~al~~l~~l~~-~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~ 563 (1219)
.-|.+++.-+...+. .|-|+.+.+-...+...+..+++.+..+-..-+-..++.++..++|. +.-..+...+.+
T Consensus 75 ktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~-----q~~ee~~~t~~~ 149 (427)
T KOG2842|consen 75 KTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPG-----QEEEEWTKTLGP 149 (427)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCc-----chhhHHHhccch
Confidence 456777766555443 33344445555667777788887664432222222344454444442 223334444444
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 000934 564 AIMSRLTNQDQDQEVKECAISCMGLVIST 592 (1219)
Q Consensus 564 ~ll~~l~~~d~d~~vr~~Ai~alg~l~~~ 592 (1219)
.....+...+.....|..+..|+|..+-.
T Consensus 150 ~~~li~~d~s~sv~~r~~ca~sl~v~~l~ 178 (427)
T KOG2842|consen 150 FLALILDDESASIKARSICATSLGTACLI 178 (427)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHH
Confidence 33333343444455667777777765433
No 312
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=54.70 E-value=85 Score=30.46 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchH-HHHHHHHhhhcCC------CChhhhHHHHHHHHHHhh
Q 000934 642 EHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAY-EVIIVELSTLISD------SDLHMTALALELCCTLMA 714 (1219)
Q Consensus 642 ~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~-~~il~~l~~~l~~------~d~~~~~~al~~l~~l~~ 714 (1219)
..++..+..-|...|......||..|..+++++|..+..... ..+++++..+++. .+..+.+-++..+.....
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 344555555566667777888999999999999987654332 5577777777742 356666667766665554
No 313
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription]
Probab=54.45 E-value=6.2e+02 Score=33.11 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHh
Q 000934 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLV 74 (1219)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~ 74 (1219)
...-.++.||.+.|+-+|+.|+..|..-++... +......++..|++.+.+.-..+|-...-|++.+.
T Consensus 73 k~~ldlf~klas~l~~~r~~aa~~Ll~~lq~~~---~ae~~~YvL~RLIrg~ss~resaRlgfs~~Ltev~ 140 (1129)
T KOG1926|consen 73 KEKLDLFTKLASSLRPVRLAAAFQLLADLQELR---DAEELSYVLNRLIRGLSSDRESARLGFSLILTEVL 140 (1129)
T ss_pred hHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhh
Confidence 444568899999999999999999887776532 55778889999999999777889999999998776
No 314
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=54.28 E-value=4.7e+02 Score=31.68 Aligned_cols=159 Identities=13% Similarity=0.099 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhccCccchhhHH--HHHHHHHHhhhcCh----hhHHHHHHHHHHHhc--CCCcchhhHHHHHHHHHHh
Q 000934 42 DLEVKLSNIVVQQLDDVAGDVSGL--AVKCLAPLVKKVSE----PRVVEMTDKLCIKLL--NGKDQHRDIASIALKTIIA 113 (1219)
Q Consensus 42 ~~~~~v~~~ll~~L~D~~~eVq~~--A~k~l~~l~~~~~~----~~~~~l~~~L~~~~~--~~~~~~r~~a~~aL~~~i~ 113 (1219)
+++..++..|-+.+.++.=.-++. -+=.+|.+...+++ +.+..++..|+.... .+++..-.+|+ -+-.+++
T Consensus 477 Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvAS-nIMyvvG 555 (1053)
T COG5101 477 DTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVAS-NIMYVVG 555 (1053)
T ss_pred hHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhec-ceeeeec
Confidence 455556666777777665444432 33345555555444 234456666665543 23332111222 2223344
Q ss_pred hcCC-hhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhh--------HhHHHHHHHHhhhhcCChH
Q 000934 114 EVTT-SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS--------NDHERLLSALLPQLSANQA 184 (1219)
Q Consensus 114 ~~~~-~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~--------~~~~~l~~~ll~~l~~~~~ 184 (1219)
..|. -...-+.++.++-+|++.|... +..|+.-|||.+..++......+. ++...+++-+-..-.+=.+
T Consensus 556 QYpRFLkahw~FLkTVv~KLFEFMhE~--HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~p 633 (1053)
T COG5101 556 QYPRFLKAHWSFLKTVVKKLFEFMHED--HEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEP 633 (1053)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCCh
Confidence 4332 0112345678888999999765 688999999999999988765431 2334444444443344344
Q ss_pred HHHHHHHHHHHHHHhhCCH
Q 000934 185 SVRKKSVSCIASLASSLSD 203 (1219)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~ 203 (1219)
.-+..--.|+|.+....+.
T Consensus 634 qQ~htfYeAcg~vIse~p~ 652 (1053)
T COG5101 634 QQKHTFYEACGMVISEVPK 652 (1053)
T ss_pred HHHhHHHHHHhHHHhccch
Confidence 4444445555555544443
No 315
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=54.12 E-value=1.9e+02 Score=28.01 Aligned_cols=103 Identities=13% Similarity=0.175 Sum_probs=62.7
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh-h--hccchhh
Q 000934 175 LLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY-R--FGPHLGD 251 (1219)
Q Consensus 175 ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~-~--~~~~l~~ 251 (1219)
++..|+.+..++.|.|--||-+ .-+.+ .+.+.+++.+++++. ..|-..++++..++..+-. . ..+|..-
T Consensus 13 ~L~~L~aS~qSi~kaa~fAlk~--~~~~e----dL~~cIle~le~~~l--N~R~nI~~fID~l~e~~~~~~~~~~~Yv~~ 84 (139)
T PF12243_consen 13 LLRRLNASQQSIQKAAQFALKN--RDMEE----DLWSCILEQLEKENL--NTRINIFYFIDSLCESSQKSKKYNYPYVSM 84 (139)
T ss_pred HHHHcchhHHHHHHHHHHHHHc--cccHH----HHHHHHHHHHhccch--hhHHHHHHHHHHHHHHHHhcccccchhHHH
Confidence 3445655566888888888876 33334 466677777777754 4788889999998887642 2 3556544
Q ss_pred h---HHHHHHhhhccCCCChHHHHHHHHHHHHHHHhC
Q 000934 252 T---VPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1219)
Q Consensus 252 i---ip~ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1219)
+ +|.++...-..+.....=+..+.+.|..|-.++
T Consensus 85 l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~k~ 121 (139)
T PF12243_consen 85 LQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSKKK 121 (139)
T ss_pred HHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHcC
Confidence 3 666665554211011123456777777776654
No 316
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=53.46 E-value=1.1e+02 Score=29.93 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhh--hhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccC
Q 000934 426 KIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADH--IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH 501 (1219)
Q Consensus 426 ~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~--~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~ 501 (1219)
..+++|.+.+..+++.+. .-++.+|..++...|..|... -..++..+.+.+.++ ....++...+.++.......
T Consensus 37 ~a~ral~KRl~~~n~~v~-l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~-~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQ-LRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR-VHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHh
Confidence 345777888888888887 889999999999888777553 234566676777665 44678888888877775443
No 317
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=53.40 E-value=1.1e+02 Score=29.98 Aligned_cols=61 Identities=11% Similarity=0.224 Sum_probs=45.7
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHhH--HHHHHHHhhhhcC-ChHHHHHHHHHHHHHHHhhCC
Q 000934 142 NTEIRCECLDILCDVLHKFGNLMSNDH--ERLLSALLPQLSA-NQASVRKKSVSCIASLASSLS 202 (1219)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~--~~l~~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~ 202 (1219)
++.++..|+.+|..++++.|..+..+. ...++.+...+.. ....||.+.+..+...+..+.
T Consensus 50 n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 50 DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 689999999999999999998765332 3445555555555 456899999999988776664
No 318
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=52.12 E-value=2.6e+02 Score=33.59 Aligned_cols=107 Identities=16% Similarity=0.165 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHhh-ccCCccchHhHHHHHHhhhhccCcccchHHHHH-----HhcCCCchhhHHHHhhhHhhhccCCch
Q 000934 926 DSSVEKILNLLFNH-CESEEEGVRNVVAECLGKIALIEPAKLVPALKV-----RTTSSAAFTRATVVIAIKYSIVERPEK 999 (1219)
Q Consensus 926 ~~~~~~i~~~L~~~-~~~~~e~~r~~~ae~LG~l~~~~p~~~lp~l~~-----~l~~~~~~~R~~~~~~~k~~~~~~~~~ 999 (1219)
..++..|...+|-+ ..+-++-+|-.+.-.|+-=+-.-|+.+.....- .|.+.+..+|-++...+.|+++..+..
T Consensus 269 ~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~ 348 (740)
T COG5537 269 RDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHT 348 (740)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcc
Confidence 33455566655543 334455677666666665555667665544422 357888999999999999999887642
Q ss_pred --hhhhhhHhHHHHHh-hccCCChHHHHHHHHHHHHH
Q 000934 1000 --IDEIIFPEISSFLM-LIKDQDRHVRRAAVLALSTF 1033 (1219)
Q Consensus 1000 --~~~~l~~~i~~~l~-~l~D~~~~vR~~a~~~L~~~ 1033 (1219)
...++.-+...++. +..|.|. ||-.+...+..+
T Consensus 349 d~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~l 384 (740)
T COG5537 349 DAIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYL 384 (740)
T ss_pred hHHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHH
Confidence 22333333444555 3458888 999999988873
No 319
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=51.84 E-value=2.7e+02 Score=29.96 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=44.5
Q ss_pred hcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCCh-hHHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHh
Q 000934 379 FKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNP-RWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVV 457 (1219)
Q Consensus 379 ~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~ 457 (1219)
++|++..|...++.+...+.+..-. |- ...+ ...+-+.+..+-..+...+.+.++.+| ..|+.++..++..
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~---~i----~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk-~~~iKFle~vIl~ 73 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFR---WI----CVNPSDEQLWESMNELKDRILSLWDSENPGVK-LAAIKFLERVILV 73 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHH---HH----S--HHHHHHHHHHHHHHHHHHHGGGSSSHHHH-HHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHH---HH----cCCchHHHHHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHh
Confidence 3677788888888877776654210 00 0001 112223345555677777888888899 9999999998876
Q ss_pred c
Q 000934 458 L 458 (1219)
Q Consensus 458 ~ 458 (1219)
+
T Consensus 74 q 74 (239)
T PF11935_consen 74 Q 74 (239)
T ss_dssp T
T ss_pred c
Confidence 4
No 320
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=51.59 E-value=1.8e+02 Score=40.04 Aligned_cols=124 Identities=13% Similarity=0.194 Sum_probs=78.3
Q ss_pred HHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHH
Q 000934 152 ILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNI 231 (1219)
Q Consensus 152 ~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i 231 (1219)
.+.+.+..++..+.+|.+.++...-..+.++++.++.-+......+-..+..-.-++++..++..+.+.+ +....+++
T Consensus 417 ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~--~~ev~~aL 494 (1426)
T PF14631_consen 417 LLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGN--SQEVDAAL 494 (1426)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCc--HHHHHHHH
Confidence 4555566667778888899999988889999999999999888887777643223455555555554433 24456899
Q ss_pred HHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHH
Q 000934 232 QMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESF 281 (1219)
Q Consensus 232 ~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l 281 (1219)
..+..++...+..+.||- ..+..+++++.+ -....+|.. +..+..+
T Consensus 495 ~vL~~L~~~~~~~l~~fa-~~l~giLD~l~~--Ls~~qiR~l-f~il~~L 540 (1426)
T PF14631_consen 495 DVLCELAEKNPSELQPFA-TFLKGILDYLDN--LSLQQIRKL-FDILCTL 540 (1426)
T ss_dssp HHHHHHHHH-HHHHHHTH-HHHHGGGGGGGG----HHHHHHH-HHHHHHH
T ss_pred HHHHHHHhccHHHHHHHH-HHHHHHHHHHhc--CCHHHHHHH-HHHHHHH
Confidence 999999998887776663 233334444442 223445542 3444433
No 321
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=51.37 E-value=5.6e+02 Score=31.64 Aligned_cols=95 Identities=8% Similarity=0.092 Sum_probs=41.7
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChH--------------HHHHHHHHHHHHHHhhCCHHHHH
Q 000934 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQA--------------SVRKKSVSCIASLASSLSDDLLA 207 (1219)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~--------------~vrk~a~~~l~~l~~~~~~~~~~ 207 (1219)
++.+...-...++.|+...|. |.+.++..+...+..+.. .+..+.-.+|..+....|.. ..
T Consensus 87 ~~~~v~~y~~Fl~~Lvsa~~~----yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP~s-~~ 161 (563)
T PF05327_consen 87 DEDFVEAYIQFLINLVSAQPK----YLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILRLVPTS-PS 161 (563)
T ss_dssp -HHHHHHHHHHHHHHHHH-GG----GHHHHHHHHHHGGGS-HHHHHH---------------HHHHHHHHHHH-GGG-HH
T ss_pred CHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHHHcCCC-HH
Confidence 345555555666666655554 455566666655554432 23345666666666655443 23
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh
Q 000934 208 KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV 241 (1219)
Q Consensus 208 ~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~ 241 (1219)
.+++.+.+.+-....+......++.-+-.+...+
T Consensus 162 ~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~ 195 (563)
T PF05327_consen 162 FLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYC 195 (563)
T ss_dssp HHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcch
Confidence 3444444444333222223334444444444444
No 322
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=50.57 E-value=1.6e+02 Score=30.34 Aligned_cols=76 Identities=9% Similarity=0.071 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhcc
Q 000934 423 EVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 500 (1219)
Q Consensus 423 ~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 500 (1219)
+...++..+.--..+.+..+. ..+...|-+.+... ..-...+..++..+...+++...+.++-+-.+.++..++..
T Consensus 84 y~~~ll~Glv~S~G~~tesl~-~~s~~AL~~~~~~~-~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 84 YRYSLLSGLVVSAGGLTESLV-RASSAALLSYLREL-SDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred HHHHHHhHHHhcCCCCchhHH-HHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC
Confidence 444555555544444444444 44444444444321 11123455556666666655443345556667777777665
No 323
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=50.37 E-value=4.5e+02 Score=30.33 Aligned_cols=71 Identities=20% Similarity=0.193 Sum_probs=52.0
Q ss_pred hHHHHHHHHhhcCCCCchHHHHHHHHHHHhhhccCCCCC--cc--chHHHHHHhcCCCchhHhHHHHHHHHhhhhcC
Q 000934 812 STVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSS--HE--HIENVIIESFQSPFEEIKSAASYALGNIAVGN 884 (1219)
Q Consensus 812 ~~l~~~~~~l~~~~~~~~~~~~laL~~Lgeig~~~~~~~--~~--~l~~~ll~~l~~~~e~vR~aAa~aLG~l~~~~ 884 (1219)
.++..++..++. +.++..-+.|++=+|++.++.+-.- .+ .-.+.+++++.+++++||--|-.|+-++...+
T Consensus 366 ellkiL~~lLe~--s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~~ 440 (442)
T KOG2759|consen 366 ELLKILIKLLET--SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVHN 440 (442)
T ss_pred HHHHHHHHHHhc--CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Confidence 567777777764 4456667788888999988864321 11 25677889999999999999988887776544
No 324
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=50.24 E-value=85 Score=29.21 Aligned_cols=74 Identities=9% Similarity=0.233 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhh------ccCCCChHHHHHHHHHHH
Q 000934 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCT------SASENDEELREYSLQALE 279 (1219)
Q Consensus 206 ~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~------~~~~~d~elre~al~~l~ 279 (1219)
...++..+...+.+.++ .+.-.++.++..+++.+|.+|..++..-. ++...+. ...+.+..+|+.+++.++
T Consensus 35 ~~~~~~~l~kRl~~~~~--~~~lkaL~lLe~lvkN~g~~f~~~i~~~~-~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 35 PKEAVDAIKKRINNKNP--HVVLKALTLLEYCVKNCGERFHQEVASND-FAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred HHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHHccHHHHHHHHHhH-HHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 34556666666666543 45556777777777777777666553321 1122111 001346789999998888
Q ss_pred HHH
Q 000934 280 SFL 282 (1219)
Q Consensus 280 ~l~ 282 (1219)
.|.
T Consensus 112 ~w~ 114 (115)
T cd00197 112 LWA 114 (115)
T ss_pred HHh
Confidence 774
No 325
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=50.18 E-value=97 Score=30.09 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhh--hhhhHhHHHhhcCCCCcch--hHHHHHHHHHHHhcc
Q 000934 425 SKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHI--GSLIPGIEKSLNDKSSTSN--LKIEALTFTRLVLSS 500 (1219)
Q Consensus 425 p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~--~~l~~~l~~~l~d~~~~~~--~~~~al~~l~~l~~~ 500 (1219)
...+++|.+.++.+++++. .-|+.+|..++...+..|...+ ..++..+...+.++..... ++..++.++......
T Consensus 41 kea~~~l~krl~~~~~~vq-~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQ-LLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHH-HHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 4556788888988888888 8899999999998777665532 3356666666655543333 788888887777554
Q ss_pred C
Q 000934 501 H 501 (1219)
Q Consensus 501 ~ 501 (1219)
.
T Consensus 120 f 120 (140)
T PF00790_consen 120 F 120 (140)
T ss_dssp T
T ss_pred H
Confidence 4
No 326
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=49.16 E-value=26 Score=30.94 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCc
Q 000934 226 MIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1219)
Q Consensus 226 ~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1219)
.|.+++-.+++++.+.|..+.+++|.++..+..... +...++.++-.+|..|-+.-.
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~----~~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAN----DPQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSS----S-SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhC----CCchHHHHHHHHHHHHHHhCc
Confidence 566789999999999999999999999988776654 356788888888887766543
No 327
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=48.97 E-value=2.6e+02 Score=27.13 Aligned_cols=61 Identities=16% Similarity=0.284 Sum_probs=43.2
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHh------HHHHHHHHhhhh--cCChHHHHHHHHHHHHHHHhhCC
Q 000934 142 NTEIRCECLDILCDVLHKFGNLMSND------HERLLSALLPQL--SANQASVRKKSVSCIASLASSLS 202 (1219)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~------~~~l~~~ll~~l--~~~~~~vrk~a~~~l~~l~~~~~ 202 (1219)
++.+...|+.+|..++++.|..+..+ ...+++.+-+.- ......||.+.+..+-.-+..++
T Consensus 51 n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 51 QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 58899999999999999999976432 334444442211 12356899999999988776654
No 328
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=48.63 E-value=5.9e+02 Score=31.15 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=55.7
Q ss_pred hhhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchh-hhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 000934 465 HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHP-YIKALSSPVLAAVGERYYKVTAEALRVCGELVRV 542 (1219)
Q Consensus 465 ~~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~-~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~ 542 (1219)
++.+++-.+...+.... +..+|...+.|++.+.+-.-|+..+. -.+.+.......+.|+++-+...|+.+++.|++.
T Consensus 476 ~i~qv~~~l~~l~~~~p-p~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~ 553 (559)
T PF14868_consen 476 LIEQVLTELTSLFKSEP-PDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAER 553 (559)
T ss_pred HHHHHHHHHHHHHhhCC-CccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 67777777777765332 24589999999999976655655553 4444544444566899999999999999999864
No 329
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=47.91 E-value=2.6e+02 Score=26.84 Aligned_cols=93 Identities=12% Similarity=0.164 Sum_probs=65.1
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHH-----HHHHHHHHHH
Q 000934 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL-----AKATIEVVRN 216 (1219)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~-----~~l~~~ll~~ 216 (1219)
++..-.+.||.+.. +. ..-...+..+..-+.++++.+.-+|+..+..++..++..+. ..++..+...
T Consensus 17 dw~~~l~icD~i~~-----~~---~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l 88 (133)
T smart00288 17 DWELILEICDLINS-----TP---DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKL 88 (133)
T ss_pred CHHHHHHHHHHHhC-----CC---ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHH
Confidence 56666666665532 11 12345667777888899999999999999999999988742 3467777766
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhh
Q 000934 217 LRSKGAKPEMIRTNIQMVGALSRAVG 242 (1219)
Q Consensus 217 l~~~~~~~~~~~~~i~~l~~l~~~~~ 242 (1219)
+.++.....++..++.++..-+...+
T Consensus 89 ~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 89 IKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 66654433377777777777776553
No 330
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.71 E-value=89 Score=34.19 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=62.5
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhhc
Q 000934 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSL--SDDLLAKATIEVVRNLRS 219 (1219)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~--~~~~~~~l~~~ll~~l~~ 219 (1219)
++.|+..|++.+..+..+-+..+..+....++.+.+.+.+..+ -+-|.+++.+++... ...+++.++..++..+.+
T Consensus 16 sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~k~l~~~~~~ 93 (353)
T KOG2973|consen 16 SPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLLKVLMDMLTD 93 (353)
T ss_pred ChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Confidence 5789999999888887774555666677888888888887666 445666777666532 222455566666666666
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 000934 220 KGAKPEMIRTNIQMVGALSR 239 (1219)
Q Consensus 220 ~~~~~~~~~~~i~~l~~l~~ 239 (1219)
+.+ ...+..+.++.++++
T Consensus 94 p~~--~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 94 PQS--PLADLICMLLSNLSR 111 (353)
T ss_pred ccc--chHHHHHHHHHHhcc
Confidence 655 344556666666654
No 331
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=47.39 E-value=2.9e+02 Score=28.51 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCc---chhHHHHHHHHHHHhcc
Q 000934 424 VSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSST---SNLKIEALTFTRLVLSS 500 (1219)
Q Consensus 424 ~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~---~~~~~~al~~l~~l~~~ 500 (1219)
+..++..+.++..++-.++| ..|..+|..+...... -.++++ =.+.+...+...... +.--.+++..+..++.
T Consensus 5 ~~~~~~~llrqa~EKiDrvR-~~A~~~l~~ll~~~~~-~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~- 80 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVR-EVAGKCLQRLLHSQDP-TIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD- 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCc-cccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc-
Confidence 44555556666666667899 8888888888743211 112222 123333333322110 1112233333333332
Q ss_pred CCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcCCCHHHHH
Q 000934 501 HSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKE 580 (1219)
Q Consensus 501 ~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~ 580 (1219)
+..|...++..++..++.....+...+..++-+++.... .-...+..++..++..++.+..+..+--
T Consensus 81 -----~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~--------~~~~~~~~v~~~l~~il~~~~~~dRv~v 147 (193)
T PF12612_consen 81 -----LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELS--------DSPEELEQVLSDLLSILKENLRNDRVVV 147 (193)
T ss_pred -----cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhh--------cCHHHHHHHHHHHHHHHHHhCCCCCeee
Confidence 123555566666666555444455555555444443210 1123344455555555554433333334
Q ss_pred HHHHHHHHHHH
Q 000934 581 CAISCMGLVIS 591 (1219)
Q Consensus 581 ~Ai~alg~l~~ 591 (1219)
..+..+..++.
T Consensus 148 P~l~tl~~Ll~ 158 (193)
T PF12612_consen 148 PLLKTLDFLLS 158 (193)
T ss_pred cHHHHHHHHHh
Confidence 44444444443
No 332
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=46.89 E-value=3.1e+02 Score=27.44 Aligned_cols=78 Identities=19% Similarity=0.318 Sum_probs=56.7
Q ss_pred hhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhh-hhcCChH--HHHHHHHHHHHH
Q 000934 120 LAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLP-QLSANQA--SVRKKSVSCIAS 196 (1219)
Q Consensus 120 ~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~-~l~~~~~--~vrk~a~~~l~~ 196 (1219)
+...+-+.+.|.+++.+... +..+-..++.++..++.+++..+..+.+.++..++. .+.++.+ .-|..++.++..
T Consensus 66 l~~~lk~~l~~~Ll~~~~~~--~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~ 143 (168)
T PF12783_consen 66 LINLLKDDLCPALLKNLSSS--DFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRE 143 (168)
T ss_pred HHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Confidence 44444566778888777664 477888899999999999999998888887777766 5554442 456667777766
Q ss_pred HHh
Q 000934 197 LAS 199 (1219)
Q Consensus 197 l~~ 199 (1219)
+..
T Consensus 144 l~~ 146 (168)
T PF12783_consen 144 LCK 146 (168)
T ss_pred HHh
Confidence 664
No 333
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=46.24 E-value=2.5e+02 Score=26.06 Aligned_cols=76 Identities=16% Similarity=0.091 Sum_probs=53.1
Q ss_pred hHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCchhhhchhhh--hhHHHHHhhhcccccceeeeccCceeecccChhHH
Q 000934 1005 FPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPE--LLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELR 1082 (1219)
Q Consensus 1005 ~~~i~~~l~~l~D~~~~vR~~a~~~L~~~~~~~p~~i~~~l~~--llp~l~~~~~~~~elir~v~mgpfkh~~Ddgle~R 1082 (1219)
..++..+.+.|++++..+..-|+..|.+++.|++.-+...+.. ++-.+...... ++ ...+.|..+|
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~-----------~~-~~~~~~~~Vr 103 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKS-----------KL-LGDDVSTNVR 103 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcc-----------cc-ccCCCChHHH
Confidence 3456666778888999999999999999999999998877744 22222211000 01 1345689999
Q ss_pred HHHHHHHHHH
Q 000934 1083 KAAFECVDTL 1092 (1219)
Q Consensus 1083 k~a~e~l~~l 1092 (1219)
+.+.+.+.+.
T Consensus 104 ~k~~~l~~~w 113 (115)
T cd00197 104 EKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHH
Confidence 9999877654
No 334
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=46.12 E-value=1.7e+02 Score=28.53 Aligned_cols=73 Identities=10% Similarity=0.166 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhh--hhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHhcc
Q 000934 426 KIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADH--IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 500 (1219)
Q Consensus 426 ~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~--~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 500 (1219)
..++++.+.++.+++.+. .-++.+|..++...+..|... -..++..+...+.+ .....++..++.++..-...
T Consensus 41 ~a~ral~krl~~~n~~vq-l~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQ-LYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT-TKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHcCCChHHH-HHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc-cCCHHHHHHHHHHHHHHHHH
Confidence 345778888888888887 889999999999877766542 23455555555554 33457888888777776544
No 335
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=45.77 E-value=27 Score=23.34 Aligned_cols=14 Identities=43% Similarity=0.285 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHH
Q 000934 343 WKVRRAAAKCLAAL 356 (1219)
Q Consensus 343 wkVR~~Aa~~l~~l 356 (1219)
|.||+.|+.+|+.+
T Consensus 1 ~~vR~~aa~aLg~~ 14 (30)
T smart00567 1 PLVRHEAAFALGQL 14 (30)
T ss_pred CHHHHHHHHHHHHc
Confidence 78999999999986
No 336
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=45.41 E-value=1.6e+02 Score=29.46 Aligned_cols=97 Identities=11% Similarity=0.068 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH-HHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHH-HH
Q 000934 202 SDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALS-RAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQA-LE 279 (1219)
Q Consensus 202 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~-~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~-l~ 279 (1219)
++.-|..+-+.++..-.+ +- ..|+..|..+. ..-+..+.|++..+.|-+.+.+...++.|.+..-.|+++ +-
T Consensus 40 ~~~~W~eL~d~Ils~~~~-----e~-~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~ 113 (174)
T PF04510_consen 40 QEGGWDELSDCILSLSEN-----EP-VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVC 113 (174)
T ss_pred CCCCchhHHHHHHHhhcc-----ch-HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHH
Confidence 334466777766654311 11 34566666665 445678899999999999999986433344433344432 23
Q ss_pred HHHHhCchhh-cccHHHHHHHHHHhc
Q 000934 280 SFLLRCPRDI-SSYCDEILHLTLEYL 304 (1219)
Q Consensus 280 ~l~~~~~~~~-~~~l~~ii~~~l~~l 304 (1219)
.++...-... ..++.++++.+.+.+
T Consensus 114 ~~Iql~e~~~~~~~vk~L~~~mv~Sv 139 (174)
T PF04510_consen 114 MAIQLLESSMRVDLVKELLPKMVKSV 139 (174)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHH
Confidence 2333222222 244555555555444
No 337
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=44.62 E-value=5.3e+02 Score=29.47 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhcc
Q 000934 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLD 56 (1219)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~ 56 (1219)
.+.+-+.-..+.|-.+|..|.-+|= .|--+ +...++.+.|.++|+
T Consensus 62 a~da~~d~~ed~d~~ir~qaik~lp------~fc~~-d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 62 AIDAQLDLCEDDDVGIRRQAIKGLP------LFCKG-DALSRVNDVLVQLLN 106 (460)
T ss_pred HHHhhhccccccchhhHHHHHhccc------hhccC-chhhhhHHHHHHHHH
Confidence 4455555567788888888888773 33333 556677777777776
No 338
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.30 E-value=5.5e+02 Score=30.64 Aligned_cols=135 Identities=8% Similarity=0.075 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcC-----ChHHHHHHHHHHHHHHHhhCCHH-------H-HHHH
Q 000934 143 TEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSA-----NQASVRKKSVSCIASLASSLSDD-------L-LAKA 209 (1219)
Q Consensus 143 ~~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~-----~~~~vrk~a~~~l~~l~~~~~~~-------~-~~~l 209 (1219)
+.+...-++++.-+++++++.+.+++..+.+.++.++.= .++..-..-..++-+|+.-+.+. + +...
T Consensus 571 P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMTge~~s~~l~~~~e~v~hfgspankgrcTqnlafL~~ef 650 (748)
T KOG4541|consen 571 PKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMTGESHSAGLHTDPEGVFHFGSPANKGRCTQNLAFLSREF 650 (748)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCccccchHhhccChHhhhccccccccccccccHHHHHHHH
Confidence 455666677777788888998988889999888866532 12223233334444444433222 2 3456
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCc
Q 000934 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1219)
Q Consensus 210 ~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1219)
++.++..+-..+...+...++..++-.+.-.-+..+..+.+++ +.- ..++..|.....||..+..+.|
T Consensus 651 L~tvf~~ll~~~~~t~l~s~a~~Aly~LI~~e~~~y~elvneL----~sk-----q~np~~~qrLa~Af~~Lt~sn~ 718 (748)
T KOG4541|consen 651 LRTVFHFLLFEDYSTDLVSTAADALYPLILCEPNLYQELVNEL----ISK-----QANPNFKQRLANAFQVLTTSNQ 718 (748)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhCHHHHHHHHHHH----Hhh-----ccChHHHHHHHHHHHHHhccCC
Confidence 6666666544443346777888888888776665555444443 332 2466777767777777766554
No 339
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=42.38 E-value=7.1e+02 Score=30.29 Aligned_cols=131 Identities=18% Similarity=0.096 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHH-HhcCchhhhchhhhhhHHHHHhhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhhhc
Q 000934 1020 RHVRRAAVLALSTF-AHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLD 1098 (1219)
Q Consensus 1020 ~~vR~~a~~~L~~~-~~~~p~~i~~~l~~llp~l~~~~~~~~elir~v~mgpfkh~~Ddgle~Rk~a~e~l~~ll~~~~~ 1098 (1219)
++-|.+++..+++. +.+-.+++.....-++-.++..+.. ||..-.|+-.|.||+-|-.|-.+...|+.
T Consensus 799 PdardaevLnl~ttiV~~v~~~i~~~~~l~l~svf~ctl~-----------mi~kdf~EypEhr~~f~~Ll~~inl~sF~ 867 (1053)
T COG5101 799 PDARDAEVLNLGTTIVRNVESVIYLQRELFLISVFICTLI-----------MIVKDFDEYPEHRKNFLLLLENINLFSFS 867 (1053)
T ss_pred CccccHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhHH-----------HHHhhhhhChHHHHHHHHHHHHHHHHhHH
Confidence 66777777777764 4444555555555566666655543 55567789999999999888777766632
Q ss_pred ---CCCchh---chHHHHhcccCC-cchhHhhHHHHHHHHHhhCch----hHH----HhHHHhhHHHHhhhcc-cCCcch
Q 000934 1099 ---QVNPSS---FIVPYLKSGLED-HYDVKMPCHLILSKLADKCPS----AVL----AVLDSLVDPLQKTINF-KPKQDA 1162 (1219)
Q Consensus 1099 ---~~~~~~---~~~~~~~~gl~D-~~di~~l~~~~l~~l~~~~p~----~~~----~~l~~l~~~l~~~l~~-k~k~~~ 1162 (1219)
.+.... +++ .++=.++- ..||..++..++.-|..++.+ ..- +..-++++..--+++. ..|.+-
T Consensus 868 afl~~p~p~Fklv~n-ti~wsfkhi~RDv~~~gLnill~l~kn~~~mg~~~~n~F~~~yy~s~l~~il~vltDsDhKsgF 946 (1053)
T COG5101 868 AFLSFPQPSFKLVYN-TILWSFKHINRDVSDLGLNILLILFKNCHEMGVPFINQFYAQYYMSTLENILGVLTDSDHKSGF 946 (1053)
T ss_pred HHHcCCcHHHHHHHH-HHHHHHHhccchHhhhhhHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHeeeeccchhccc
Confidence 222222 332 33333443 456666666665555554433 121 3455555555555543 344443
No 340
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=42.31 E-value=1.4e+02 Score=28.04 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcc-CccchhhHHHHHHHHHHhhhcC--hhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHh
Q 000934 42 DLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVS--EPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIA 113 (1219)
Q Consensus 42 ~~~~~v~~~ll~~L~-D~~~eVq~~A~k~l~~l~~~~~--~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~ 113 (1219)
+....+++.+.++|. ..++|.|-.+...++.++.+.+ ++-+..+++.++........ ..-+-++|-.++.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q 74 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQ 74 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHH
Confidence 456789999999999 8889999999999999998754 44455555555554432222 1234445544443
No 341
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=41.54 E-value=68 Score=31.72 Aligned_cols=75 Identities=11% Similarity=0.057 Sum_probs=48.0
Q ss_pred CcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHH
Q 000934 17 DKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCI 91 (1219)
Q Consensus 17 d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~ 91 (1219)
|+.+-.-|+.=|-+.+...+.....-..+-.++.|++.|.++++++|..|+..+..|..+.++.....+.+.|.+
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~~ 147 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAETLSQ 147 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 555555566656555543221111111223567788899999999999999888888887777666666666543
No 342
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=41.35 E-value=8.6e+02 Score=30.97 Aligned_cols=145 Identities=14% Similarity=0.197 Sum_probs=77.4
Q ss_pred HhcCchhhHHHHHHHHHHHHhhh-----cccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHHHHHHHHH
Q 000934 357 IVSRPEMLSKLYEEACPKLIDRF-----KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSI 431 (1219)
Q Consensus 357 i~~~~~~l~~~~~~i~p~Li~~~-----~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~lv~~l 431 (1219)
..+.|..++ +|...|.+|. ++|-..|.. +..++..++.+ |.+.+.-+....+..+
T Consensus 43 Aasnp~KL~----KI~~yL~~R~~kdl~~~r~~~v~I-amea~~kLL~~---------------C~eq~n~F~ssfL~mv 102 (819)
T KOG1877|consen 43 AASNPSKLP----KIGTYLEERCYKDLRRERFGSVKI-AMEAYDKLLQA---------------CKEQINLFVSSFLRMV 102 (819)
T ss_pred HhhChhhhh----HHHHHHHHHHHHHHHhccCcchhh-HHHHHHHHHHH---------------HhhhhHHHHHHHHHHH
Confidence 335565443 3444454443 334344432 34566677665 3334444567778888
Q ss_pred HHHhcccCccchhhHHHHHHHHHHHhcchh--hhhhhhhhhHhHHHhh---cCCCCcchhHHHHHHHHHHHhcc-----C
Q 000934 432 NRQLREKSIKTKQVGAFSVLRELVVVLPDC--LADHIGSLIPGIEKSL---NDKSSTSNLKIEALTFTRLVLSS-----H 501 (1219)
Q Consensus 432 ~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~--l~~~~~~l~~~l~~~l---~d~~~~~~~~~~al~~l~~l~~~-----~ 501 (1219)
.+.|.+.+.+.+ +.|...+-.++.....+ ..-....+++.+.... .+......+|.+.+..|..++.- .
T Consensus 103 ~~LLes~~~~~~-ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv~d~l 181 (819)
T KOG1877|consen 103 QKLLESNNDEMQ-ILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWLTVSDHL 181 (819)
T ss_pred HHHHhcCCCcee-eehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHHHHHHhhhh
Confidence 888888877777 77777777777543221 1111223333333332 22222234666666666655422 1
Q ss_pred CCCCchh-hhhhhHHHHHHHhc
Q 000934 502 SPPVFHP-YIKALSSPVLAAVG 522 (1219)
Q Consensus 502 ~~~~~~~-~l~~i~p~l~~~l~ 522 (1219)
.+..+.+ |.+.++|.+...++
T Consensus 182 ~~ti~e~~h~d~ivpsl~~~l~ 203 (819)
T KOG1877|consen 182 AATIWEPQHMDKIVPSLLFELQ 203 (819)
T ss_pred hhhhhhhhhhccchhhHHHhhc
Confidence 2233444 58888888887664
No 343
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=41.23 E-value=86 Score=32.38 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=61.8
Q ss_pred HHHHHHhhhhccCcccchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHhhccCCChHHHHHHHHH
Q 000934 950 VVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLA 1029 (1219)
Q Consensus 950 ~~ae~LG~l~~~~p~~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~D~~~~vR~~a~~~ 1029 (1219)
.+...+|.+....+.. +.+.+...++++..|..++..+-..+.+. ..+..++..+-..+.|++.-||.++--+
T Consensus 92 ~~~~~~~~~~~~~~~~--~~~~~w~~s~~~~~rR~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~d~~~~Vqkav~w~ 164 (197)
T cd06561 92 LCANLLGKLLYAEPEL--DLLEEWAKSENEWVRRAAIVLLLRLIKKE-----TDFDLLLEIIERLLHDEEYFVQKAVGWA 164 (197)
T ss_pred HHHHHHHHHHhcCcch--HHHHHHHhCCcHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444455555444433 77888888888888766655554433331 1233444444456678888999999999
Q ss_pred HHHHHhcCchhhhchhhhh
Q 000934 1030 LSTFAHNKPNLIKGLLPEL 1048 (1219)
Q Consensus 1030 L~~~~~~~p~~i~~~l~~l 1048 (1219)
|..+....|+.+.+++...
T Consensus 165 L~~~~~~~~~~v~~~l~~~ 183 (197)
T cd06561 165 LREYGKKDPERVIAFLEKN 183 (197)
T ss_pred HHHHHhhCHHHHHHHHHHH
Confidence 9999999999988887653
No 344
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.10 E-value=1.1e+03 Score=31.99 Aligned_cols=190 Identities=13% Similarity=0.195 Sum_probs=108.0
Q ss_pred hcCCCcchhhhhHHHHHHHhccc--cCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHh----hhcChhhHHHHH
Q 000934 13 ITGKDKDFRYMATSDLLNELNKE--SFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLV----KKVSEPRVVEMT 86 (1219)
Q Consensus 13 ~~~~d~d~R~mAl~dL~~~l~~~--~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~----~~~~~~~~~~l~ 86 (1219)
..++--++|.-.+..|++.++.+ +.-.+-...-++++.+...-......+-+++..|+--+. ..++..-+..++
T Consensus 851 ~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~li 930 (1610)
T KOG1848|consen 851 NSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLI 930 (1610)
T ss_pred hcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHH
Confidence 45566678888888888888763 222233344444444333333334566677777775443 356777778888
Q ss_pred HHHHHHhcCCCcchhhHHHHHHHHHHh----h----cCCh------------------hhhHHHHHhHhHHHHHhhhccC
Q 000934 87 DKLCIKLLNGKDQHRDIASIALKTIIA----E----VTTS------------------SLAQSIHTSLTPQLTKGITLKD 140 (1219)
Q Consensus 87 ~~L~~~~~~~~~~~r~~a~~aL~~~i~----~----~~~~------------------~~~~~~~~~l~p~L~~~l~~~~ 140 (1219)
+.+........+..-...+++|-=-+. + .+.. .+.+.+|=.+...|.+...+.
T Consensus 931 dtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ds- 1009 (1610)
T KOG1848|consen 931 DTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDS- 1009 (1610)
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccc-
Confidence 988887755444333344444321111 1 0100 011122222223333333332
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhH--hHHHHHHHHhhhhcCC------hH---HHHH----HHHHHHHHHHhhCCHH
Q 000934 141 MNTEIRCECLDILCDVLHKFGNLMSN--DHERLLSALLPQLSAN------QA---SVRK----KSVSCIASLASSLSDD 204 (1219)
Q Consensus 141 ~~~~v~~~al~~L~~l~~~~g~~l~~--~~~~l~~~ll~~l~~~------~~---~vrk----~a~~~l~~l~~~~~~~ 204 (1219)
..+||.+|+.++..++...|.-+.+ ++.-+...++|.|... ++ .++| ..+..++.++..++..
T Consensus 1010 -r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~ 1087 (1610)
T KOG1848|consen 1010 -RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSEN 1087 (1610)
T ss_pred -hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHH
Confidence 6889999999999999999988875 6677788888888732 11 2322 3556666666655443
No 345
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=40.63 E-value=29 Score=24.90 Aligned_cols=28 Identities=21% Similarity=0.086 Sum_probs=24.1
Q ss_pred HHHHHHHhccCccchhhHHHHHHHHHHh
Q 000934 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLV 74 (1219)
Q Consensus 47 v~~~ll~~L~D~~~eVq~~A~k~l~~l~ 74 (1219)
.++.+++++.+++.+++..|+.+|..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 6777888888889999999999998765
No 346
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=40.60 E-value=5.1e+02 Score=33.74 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHhccc-Ccc--chhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhc
Q 000934 417 RWLLKQEVSKIVKSINRQLREK-SIK--TKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN 478 (1219)
Q Consensus 417 ~~~L~~~~p~lv~~l~~~L~~~-~~~--~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~ 478 (1219)
...|..++.-|++.+....... ... +- ...+..|..|+...|.....++...+..+...+.
T Consensus 463 K~Kl~~f~~vLlq~i~~la~~~~~~~~~~l-d~L~~~L~~Laq~~p~~~a~~~r~~L~~~~~~~~ 526 (840)
T PF04147_consen 463 KEKLQVFFGVLLQHILYLASQDSPPPFEVL-DSLIPHLYDLAQKYPEEAAECFREVLKEMQKRFR 526 (840)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666677777776655543 111 11 2223445566666666666666666665554443
No 347
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=40.18 E-value=5e+02 Score=27.88 Aligned_cols=88 Identities=13% Similarity=0.176 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhhhcc----C-CCCh----HHHHHHHHHH
Q 000934 208 KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSA----S-ENDE----ELREYSLQAL 278 (1219)
Q Consensus 208 ~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~----~-~~d~----elre~al~~l 278 (1219)
.++..++..+..+...+...-+.+.++..|++.-| .|.+.|++.++.+-... . .... .++...-..|
T Consensus 114 ~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP----~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l 189 (239)
T PF11935_consen 114 GLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP----QFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFL 189 (239)
T ss_dssp HHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG----GGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHH
Confidence 35555666666655334566677888888887664 35678888887765531 0 0011 1222222223
Q ss_pred HHHHHhCchhhcccHHHHHHHHH
Q 000934 279 ESFLLRCPRDISSYCDEILHLTL 301 (1219)
Q Consensus 279 ~~l~~~~~~~~~~~l~~ii~~~l 301 (1219)
.. +.++|. ..||.+++...+.
T Consensus 190 ~~-llk~~~-~~~~~~~i~~~L~ 210 (239)
T PF11935_consen 190 LH-LLKHPA-SSPFQGRITQALT 210 (239)
T ss_dssp HH-HHTSGG-GGGGHHHHHHHHH
T ss_pred HH-HHCCCC-chhhHHHHHHHHH
Confidence 33 334553 3388888887775
No 348
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=39.91 E-value=1.8e+02 Score=31.43 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=31.8
Q ss_pred CChHHHHHHHHHHHHHHHhCchhhcccH--HHHHHHHHHhcc
Q 000934 266 NDEELREYSLQALESFLLRCPRDISSYC--DEILHLTLEYLS 305 (1219)
Q Consensus 266 ~d~elre~al~~l~~l~~~~~~~~~~~l--~~ii~~~l~~l~ 305 (1219)
+.+.+|=++++.++.++.....++-.|+ .+++|.|++.|.
T Consensus 108 ~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me 149 (262)
T PF04078_consen 108 PFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIME 149 (262)
T ss_dssp HHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHH
T ss_pred ccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHH
Confidence 4678999999999999998777777776 478999999884
No 349
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=39.84 E-value=37 Score=24.28 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=23.4
Q ss_pred hHHHHHHhcCCCchhHhHHHHHHHHhhh
Q 000934 854 IENVIIESFQSPFEEIKSAASYALGNIA 881 (1219)
Q Consensus 854 l~~~ll~~l~~~~e~vR~aAa~aLG~l~ 881 (1219)
..+.+++++.+++++++..|..+|++++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4566788888889999999999999875
No 350
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=38.33 E-value=3.6e+02 Score=26.62 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=31.4
Q ss_pred chhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcC
Q 000934 60 GDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLN 95 (1219)
Q Consensus 60 ~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~ 95 (1219)
.+|-..++.|+-.++-|+.+....++.-+|+.+...
T Consensus 35 ~~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~ 70 (153)
T PF08146_consen 35 DEVESSVISAFVSLVLKLNEATFRPLFLKLVDWATS 70 (153)
T ss_pred HHHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcc
Confidence 467788899999999999999999999999998754
No 351
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=38.14 E-value=86 Score=28.49 Aligned_cols=59 Identities=14% Similarity=0.344 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhh--hHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCch
Q 000934 227 IRTNIQMVGALSRAVGYRFGPHLGD--TVPVLIDYCTSASENDEELREYSLQALESFLLRCPR 287 (1219)
Q Consensus 227 ~~~~i~~l~~l~~~~~~~~~~~l~~--iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~ 287 (1219)
|...+.+++.++...+. ....+.. -+|.+++.+.-+ +.++-+||-|+-++-.++..+++
T Consensus 3 K~~lvrlianl~~~~~~-~Qd~vr~~~Gi~liL~~c~iD-~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKE-VQDLVRELGGIPLILSCCNID-DHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHH-HHHHHHHcCChHHHHHhcCCC-cccHHHHHHHHHHHHHHHhCCHH
Confidence 55677888888876653 1333322 288999988763 67788999999999999998884
No 352
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=37.81 E-value=3.9e+02 Score=25.89 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=56.2
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHH-----HHHHHHHHHHhhcCCCChH--HHHHHHHHHHHHHHH
Q 000934 168 HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL-----AKATIEVVRNLRSKGAKPE--MIRTNIQMVGALSRA 240 (1219)
Q Consensus 168 ~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~-----~~l~~~ll~~l~~~~~~~~--~~~~~i~~l~~l~~~ 240 (1219)
-...+..+...|.++++.+.-.|+..+..++..++..+. ..++..+...+.+...... +++.++..+...+..
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 356677788889999999999999999999999988753 3467777776666554322 787888877777766
Q ss_pred h
Q 000934 241 V 241 (1219)
Q Consensus 241 ~ 241 (1219)
.
T Consensus 120 f 120 (140)
T PF00790_consen 120 F 120 (140)
T ss_dssp T
T ss_pred H
Confidence 5
No 353
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=37.76 E-value=5.7e+02 Score=31.33 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChh--hhHHHHHHHHHH
Q 000934 642 EHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLH--MTALALELCCTL 712 (1219)
Q Consensus 642 ~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~--~~~~al~~l~~l 712 (1219)
+..+..|..++.+++..+|.+++.-|+..... .-.++++..|.|.+.+.+.. +...+--.||.+
T Consensus 451 dpalALLsdyv~~~~s~~ri~aIlGLglayaG-------sq~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~I 516 (878)
T KOG2005|consen 451 DPALALLSDYLQSSSSIHRIGAILGLGLAYAG-------SQREEVLELLSPIMFDTKSPMEVVAFASLSLGMI 516 (878)
T ss_pred CHHHHHHHHhccCCCceeehHHhhhhHHhhcC-------CchHHHHHHHhHHhcCCCCchhHHHHHHhhccee
Confidence 44566788888888888888887777654322 22466776788888777665 444444444544
No 354
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.19 E-value=1.1e+03 Score=31.04 Aligned_cols=214 Identities=16% Similarity=0.201 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHHHHhhh--hh-hH-hHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhCCHHHHHHH--HHHHHHH
Q 000934 144 EIRCECLDILCDVLHKFGN--LM-SN-DHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDDLLAKA--TIEVVRN 216 (1219)
Q Consensus 144 ~v~~~al~~L~~l~~~~g~--~l-~~-~~~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~~~~l--~~~ll~~ 216 (1219)
.++..-+..+..++...+. .+ .. ..+.++.++.. +.+..+ .+|..|..+.-.+..++-+..++-. ....-..
T Consensus 170 ~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~Lta-mSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~~~~tskQ 248 (1048)
T KOG2011|consen 170 NFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTA-MSDSQVRAFRHTATLAAMKLMTALVSVALNLSSHNDKTSKQ 248 (1048)
T ss_pred HHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3566667777777776554 12 22 24555555544 444444 7888887776655554433211100 0011111
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhhhhhccchhhhHHHHHHhh---hccCCCChHHHHHHHHHHHHHHHhCchhhcccH
Q 000934 217 LRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYC---TSASENDEELREYSLQALESFLLRCPRDISSYC 293 (1219)
Q Consensus 217 l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~---~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l 293 (1219)
+.....+....+..+..+...-... .+...-+..+|..+.+.+ +.. |-++++|-.|++.++-|+..+|..|-.
T Consensus 249 leaEr~k~r~~rarle~Ll~~r~et-qe~~d~i~~mi~~if~sVFVHRYR-DV~~~IRaiCiqeLgiWi~~yP~~Fl~-- 324 (1048)
T KOG2011|consen 249 LEAERNKSRGNRARLESLLMLRKET-QEQQDEIESMINDIFDSVFVHRYR-DVDPDIRAICIQELGIWIKSYPEIFLS-- 324 (1048)
T ss_pred HHHHhcccccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhheeeeecc-cCchHHHHHHHHHHHHHHHhccHHHhc--
Confidence 1111100111222222222221111 111223334444443322 111 678999999999999999999965421
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCc--hhhHHHHHHH
Q 000934 294 DEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP--EMLSKLYEEA 371 (1219)
Q Consensus 294 ~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~--~~l~~~~~~i 371 (1219)
...++|+.. . . .|..-.||+...++|..|....- +.+..+.+..
T Consensus 325 ----dsYLKYiGW----t-----------------------L---sDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRF 370 (1048)
T KOG2011|consen 325 ----DSYLKYIGW----T-----------------------L---SDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRF 370 (1048)
T ss_pred ----chHHHHhcc----e-----------------------e---ecCccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 123344421 0 0 01122799999999999988732 2333333333
Q ss_pred HHHHHhhh-cccchhHHHHHHHHHHH
Q 000934 372 CPKLIDRF-KEREENVKMDVFNTFIE 396 (1219)
Q Consensus 372 ~p~Li~~~-~d~~~~Vr~~~~~~l~~ 396 (1219)
-.-+++.. +|.+..||...+.....
T Consensus 371 K~RIVeMadrd~~~~Vrav~L~~~~~ 396 (1048)
T KOG2011|consen 371 KDRIVEMADRDRNVSVRAVGLVLCLL 396 (1048)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHH
Confidence 33333332 56667777655544433
No 355
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=37.05 E-value=2.5e+02 Score=28.31 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=34.9
Q ss_pred ccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHH
Q 000934 58 VAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTII 112 (1219)
Q Consensus 58 ~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i 112 (1219)
+++.||+.|+++|.. ++++.+..++++|.+.+.-+.......+..-|+..+
T Consensus 83 ~d~~VR~yAV~~L~~----~sd~eL~~yL~QLVQaLKyE~~~ds~La~FLl~Ral 133 (171)
T cd00872 83 PDEHVREFAVRCLEK----LSDDELLQYLLQLVQVLKYEPYHDSDLVRFLLKRAL 133 (171)
T ss_pred CCHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHh
Confidence 358899999988864 567888899999988886443222344555555444
No 356
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=37.05 E-value=2.5e+02 Score=28.81 Aligned_cols=50 Identities=18% Similarity=0.160 Sum_probs=33.4
Q ss_pred cchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHH
Q 000934 59 AGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTII 112 (1219)
Q Consensus 59 ~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i 112 (1219)
++.||..|+++|. ..+++.+..++++|++.+.-+.......+..-++...
T Consensus 90 ~~~VR~yAv~~L~----~~~d~~l~~yLpQLVQaLr~e~~~~s~L~~fLl~ra~ 139 (184)
T PF00613_consen 90 DPFVRQYAVRRLE----SLSDEELLFYLPQLVQALRYEPYHDSPLARFLLRRAL 139 (184)
T ss_dssp -HHHHHHHHHHHC----TS-HHHHHHHHHHHHHHGGGSSSSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HcCchHHHHHHHHHHHHheeccccccHHHHHHHHHHH
Confidence 5889999998884 4567888899999999886443333445555555544
No 357
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.92 E-value=6.7e+02 Score=28.11 Aligned_cols=112 Identities=17% Similarity=0.240 Sum_probs=70.7
Q ss_pred hhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHH-HHHHHHHhcccCCCCCCCCCCCcccccccccc
Q 000934 249 LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDE-ILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEE 327 (1219)
Q Consensus 249 l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~-ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~ 327 (1219)
++.|+..+++.. +|+.+.+.++-++..++.+.|..-+.+++. .-.+.++.|+.-|--
T Consensus 330 ~~~ii~l~~~h~-----~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~----------------- 387 (461)
T KOG4199|consen 330 LDKIITLALRHS-----DDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVA----------------- 387 (461)
T ss_pred hHHHHHHHHHcC-----CChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHH-----------------
Confidence 455555555543 578888888888888998988765555543 344556666654431
Q ss_pred hhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHH
Q 000934 328 EDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIEL 397 (1219)
Q Consensus 328 d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l 397 (1219)
..|.|-||-++..++....+.-..++..=+..|+..-+..++.++..+-.++..+
T Consensus 388 ---------------a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 388 ---------------AQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred ---------------HHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 2578888989888887665544445544455666554555666666555444433
No 358
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=34.43 E-value=3.4e+02 Score=33.12 Aligned_cols=70 Identities=27% Similarity=0.363 Sum_probs=42.7
Q ss_pred chhhHHHHHHHHhhcCCCCchHHHHHHHHHHHhhhccCCCCCccchHHHHHHhcCCC--chhHhHHHHHHHHhhhhcC
Q 000934 809 KCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSP--FEEIKSAASYALGNIAVGN 884 (1219)
Q Consensus 809 ~~~~~l~~~~~~l~~~~~~~~~~~~laL~~Lgeig~~~~~~~~~~l~~~ll~~l~~~--~e~vR~aAa~aLG~l~~~~ 884 (1219)
+.+..+.-+.+++++ .+...|.-++..||-.-. + +..+++...+.+.+.+. ..+|..-|+.+||.+..|.
T Consensus 449 e~dpalALLsdyv~~---~~s~~ri~aIlGLglaya--G-sq~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGs 520 (878)
T KOG2005|consen 449 ECDPALALLSDYLQS---SSSIHRIGAILGLGLAYA--G-SQREEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGS 520 (878)
T ss_pred ccCHHHHHHHHhccC---CCceeehHHhhhhHHhhc--C-CchHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEec
Confidence 456677777777763 233456666666554311 1 11244554666666544 3568888999999988764
No 359
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=33.89 E-value=2.4e+02 Score=26.09 Aligned_cols=54 Identities=13% Similarity=0.217 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCC
Q 000934 619 LTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDK 677 (1219)
Q Consensus 619 ~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~ 677 (1219)
...+..+..++... ..+...++..+...+++.....|...+-.++.++++++..
T Consensus 18 ~~~I~~lt~~a~~~-----~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~ 71 (114)
T cd03562 18 QPSIQTLTKLAIEN-----RKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRK 71 (114)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccc
Confidence 44566666666321 3566778888888888888888999999999999998764
No 360
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=32.99 E-value=1.1e+03 Score=29.67 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=70.2
Q ss_pred HHHHHHHHhhhhcC-ChHHHHHHHHHHHHHHHhhCCHH--H-------HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000934 168 HERLLSALLPQLSA-NQASVRKKSVSCIASLASSLSDD--L-------LAKATIEVVRNLRSKGAKPEMIRTNIQMVGAL 237 (1219)
Q Consensus 168 ~~~l~~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~~~--~-------~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l 237 (1219)
++.+++..+..+.. .+..+-+.+..+|-++....... + -+.-++.+++.++.++. .+.+.+..++..+
T Consensus 516 ~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~--~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 516 HPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDS--DVVRSAAGALRNL 593 (717)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCc--hHHHHHHHHHhhh
Confidence 56666665555543 23467788888888776543221 1 13456778888887664 5777888888888
Q ss_pred HHHhhhhhccch-hhhHHHHHHhhhccC---CCChHHHHHHHHHHHHHHHhCc
Q 000934 238 SRAVGYRFGPHL-GDTVPVLIDYCTSAS---ENDEELREYSLQALESFLLRCP 286 (1219)
Q Consensus 238 ~~~~~~~~~~~l-~~iip~ll~~~~~~~---~~d~elre~al~~l~~l~~~~~ 286 (1219)
++.. +..+.+ ...||-+++.+.... .-++++--.+..++..++...+
T Consensus 594 s~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~ 644 (717)
T KOG1048|consen 594 SRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNV 644 (717)
T ss_pred ccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhH
Confidence 7743 233333 346777777765332 2345555556666766665544
No 361
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=32.42 E-value=72 Score=28.26 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCH
Q 000934 144 EIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD 203 (1219)
Q Consensus 144 ~v~~~al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~ 203 (1219)
..++.++-.|+.++..++..+.++.+.++..|.....+ ...|++.+-.+|+.|=..=.|
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D 62 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcc
Confidence 45778888999999999999989999999998877775 457888888888877654433
No 362
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=31.84 E-value=7.3e+02 Score=27.29 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHh
Q 000934 229 TNIQMVGALSRAV 241 (1219)
Q Consensus 229 ~~i~~l~~l~~~~ 241 (1219)
...+..|.+=..|
T Consensus 98 ~~~~~tG~VWeaC 110 (275)
T PF13324_consen 98 EVLQSTGRVWEAC 110 (275)
T ss_dssp -------HHHHHH
T ss_pred hhHHHHhHHHHHH
Confidence 4456666666655
No 363
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=31.16 E-value=3.9e+02 Score=27.40 Aligned_cols=50 Identities=18% Similarity=0.109 Sum_probs=32.5
Q ss_pred cchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHH
Q 000934 59 AGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTII 112 (1219)
Q Consensus 59 ~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i 112 (1219)
++.||..|+++|. ..+++.+..++++|.+.+.-+.......+..-++...
T Consensus 89 ~~~Vr~yAV~~L~----~~~d~~l~~yLpQLVQaLr~E~~~~~~L~~fLl~ra~ 138 (184)
T smart00145 89 DPFVRAYAVERLE----SASDEELLLYLLQLVQALKYEPYLDSALARFLLERAL 138 (184)
T ss_pred CHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHh
Confidence 6789999998885 4567788888888888875332222334444444433
No 364
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=30.65 E-value=4.9e+02 Score=24.92 Aligned_cols=78 Identities=14% Similarity=0.217 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCChhhhHHHHH-hHhHHHHHhhhcc-CCChhHHHHHHHHHHHHHHHhh
Q 000934 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT-SLTPQLTKGITLK-DMNTEIRCECLDILCDVLHKFG 161 (1219)
Q Consensus 84 ~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~-~l~p~L~~~l~~~-~~~~~v~~~al~~L~~l~~~~g 161 (1219)
..+..|-..+.++++.+.--|...|..++.+++. .+...+.. ..+..|...+... ..+..|+..+++.+......|+
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~-~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGK-PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh-HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3333344444444433333444455556666554 22222222 3333344433332 3367899999998888887776
Q ss_pred h
Q 000934 162 N 162 (1219)
Q Consensus 162 ~ 162 (1219)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 5
No 365
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=30.58 E-value=1.2e+03 Score=29.71 Aligned_cols=89 Identities=10% Similarity=0.030 Sum_probs=57.8
Q ss_pred hHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcC---h--hhHHHHHHHHHHHhcCC-C
Q 000934 24 ATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS---E--PRVVEMTDKLCIKLLNG-K 97 (1219)
Q Consensus 24 Al~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~---~--~~~~~l~~~L~~~~~~~-~ 97 (1219)
|+.-..+.|..-+-++ +--...++.++.++|++.++++|-.+..|+..++..-. . .....++++.++...+. .
T Consensus 76 amea~~kLL~~C~eq~-n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~ 154 (819)
T KOG1877|consen 76 AMEAYDKLLQACKEQI-NLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGD 154 (819)
T ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccc
Confidence 4444445555433333 34567788999999999999999999999999984322 1 23567888888877653 2
Q ss_pred cc----hhhHHHHHHHHHHh
Q 000934 98 DQ----HRDIASIALKTIIA 113 (1219)
Q Consensus 98 ~~----~r~~a~~aL~~~i~ 113 (1219)
++ .|-....||+.++-
T Consensus 155 ~~~~~~lr~agl~gLsa~v~ 174 (819)
T KOG1877|consen 155 DDMKDCLRAAGLQGLSAVVW 174 (819)
T ss_pred hhhhhhccHhhhhhHHHHHH
Confidence 22 23344456665554
No 366
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=29.99 E-value=5.7e+02 Score=25.47 Aligned_cols=83 Identities=16% Similarity=0.227 Sum_probs=52.9
Q ss_pred HHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhH-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 000934 131 QLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKA 209 (1219)
Q Consensus 131 ~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~-~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l 209 (1219)
++...+.....+..+...++.+|..++.+....-.- ..+.-++.++..|+.++..++..|+..+..+....+++.-..+
T Consensus 62 Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 62 KIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 333333333236788999999999988764332111 1133456677777778889999999999888777766644444
Q ss_pred HHHH
Q 000934 210 TIEV 213 (1219)
Q Consensus 210 ~~~l 213 (1219)
.+.+
T Consensus 142 ~~~l 145 (160)
T PF11841_consen 142 AETL 145 (160)
T ss_pred HHHH
Confidence 3333
No 367
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=29.08 E-value=7.1e+02 Score=28.71 Aligned_cols=240 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCCChhhhHHHHHHHHHHhhcccCCCchhHhHhhhhHHHHHHHhhhcccchhhHHHHHHHHHHHHhhc-
Q 000934 684 EVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSA- 762 (1219)
Q Consensus 684 ~~il~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~~~l~~~~- 762 (1219)
+.++..|+.+..+.|+.-+++.-.+|-++.. ..+.-.+.+...+-...++.+-..- ......-++.+++++...-
T Consensus 176 ~~FvlkLLdLFdSEDpRERe~LKT~LhrIyg---Kfl~~r~firk~iNNif~~FIyEte-~hnGIaELLEIlgSiIngfA 251 (457)
T KOG2085|consen 176 QKFVLKLLDLFDSEDPREREFLKTILHRIYG---KFLVHRPFIRKSINNIFLRFIYETE-RHNGIAELLEILGSIINGFA 251 (457)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH---HHhhhHHHHHHhhcchhhhhccccc-ccCCHHHHHHHHHHhcCccc
Q ss_pred ---CCChHHHHHHHhccCCCCCCCcchhhhhhhhhhhHhhhhhhccCccchhhHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 000934 763 ---NTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCL 839 (1219)
Q Consensus 763 ---~~~~~~l~~~Ll~~~~~~~~~~~l~~~a~~~~a~~i~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~laL~~L 839 (1219)
.....-.+-..+-++-..+.-...+.| ++.|+-...-.... ....++..++.+- |.++.+...+.|.-+
T Consensus 252 lPlKEEhkiFL~rvLipLhk~k~l~~yh~Q----LaYcivQfveKd~k-l~~~VIrglLK~W---P~tnS~KEVmFL~El 323 (457)
T KOG2085|consen 252 LPLKEEHKLFLVRVLIPLHKPKSLSLYHKQ----LAYCIVQFVEKDPK-LTETVIRGLLKYW---PKTNSSKEVMFLNEL 323 (457)
T ss_pred CcchhHHHHHHHHhhhccccCCCccccccc----cceeeeeeeccCcc-ccHHHHHHHHHhc---CCCCCcceeeeHhhH
Q ss_pred HhhhccCCCCCc----cchHHHHHHhcCCCchhHhHHHHHHHH-----hhhhcCcccchHHHHHHhccccch------hH
Q 000934 840 GEIGRRKDLSSH----EHIENVIIESFQSPFEEIKSAASYALG-----NIAVGNLSKFLPFILDQIDNQQKK------QY 904 (1219)
Q Consensus 840 geig~~~~~~~~----~~l~~~ll~~l~~~~e~vR~aAa~aLG-----~l~~~~~~~~lp~il~~l~~~~~~------~~ 904 (1219)
+||-..+..+.+ ..++..+-+++++++-.|-.-|.+-+. .++..|-..++|.+...+....+. ..
T Consensus 324 EEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~ 403 (457)
T KOG2085|consen 324 EEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHN 403 (457)
T ss_pred HHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhccccchhhhhHHHHHHHHH
Q 000934 905 LLLHSLKEVIVRQSVDKAEFQDSSVEKILNL 935 (1219)
Q Consensus 905 ~~l~alkeii~~~~~~~~~~~~~~~~~i~~~ 935 (1219)
+.+..+|-++.--..--.+-.+.|-..-|..
T Consensus 404 l~~nvlk~f~emd~~LFeec~~~y~~~~~k~ 434 (457)
T KOG2085|consen 404 LILNVLKTFMEMDPKLFEECLALYKEDRWKE 434 (457)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
No 368
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=28.43 E-value=1.6e+03 Score=30.22 Aligned_cols=74 Identities=14% Similarity=0.207 Sum_probs=45.9
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH---HHhh-cCCC------ChHHHHHHHHHHHHH
Q 000934 168 HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVV---RNLR-SKGA------KPEMIRTNIQMVGAL 237 (1219)
Q Consensus 168 ~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll---~~l~-~~~~------~~~~~~~~i~~l~~l 237 (1219)
...+.+.++|.|.+....+|..++.+||..-..+.+.++..+-+.+- ...+ .+.+ +++.|....+.+..+
T Consensus 194 aR~LFk~ivPlLks~~~~~r~AaVlaLG~~n~~v~~~LleeL~~~i~~~~~e~e~r~~~k~rr~Rrd~LR~ev~hVl~ll 273 (1120)
T PF14228_consen 194 ARELFKLIVPLLKSESSSFRDAAVLALGSINLNVYRTLLEELQSYIEECNSEAESRPKWKRRRRRRDRLRTEVTHVLRLL 273 (1120)
T ss_pred HHHHHHHHhhhhccCcHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHHHH
Confidence 46889999999999999999999999987554444444443333321 1111 0111 234666666677666
Q ss_pred HHHh
Q 000934 238 SRAV 241 (1219)
Q Consensus 238 ~~~~ 241 (1219)
+...
T Consensus 274 Ae~l 277 (1120)
T PF14228_consen 274 AEFL 277 (1120)
T ss_pred Hhhc
Confidence 6654
No 369
>PLN03205 ATR interacting protein; Provisional
Probab=28.31 E-value=4.2e+02 Score=30.03 Aligned_cols=112 Identities=13% Similarity=0.242 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhh-cc--ccc----chhhhHHHHHHHh---hcCCchHHHHHHHHHH
Q 000934 558 VQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTF-GD--NLG----AELPACLPVLVDR---MGNEITRLTAVKAFAV 627 (1219)
Q Consensus 558 l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~-g~--~l~----~~~~~~l~~L~~~---L~~e~~r~~a~~al~~ 627 (1219)
++.+++.+++.++... .-+-.+++..+-.++.|. |+ .+. .....+++.+.+. -..|.+|..|+.....
T Consensus 321 lqtLlEaLLdLC~v~n--~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnV 398 (652)
T PLN03205 321 LKSLVEPLLDLCKAET--AVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNI 398 (652)
T ss_pred HHHHHHHHHHHHhcCc--hhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHH
Confidence 6778888888776432 456788999999888886 32 222 2334445555443 2456688889988888
Q ss_pred HhcCCCC-CchhHHH-HHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Q 000934 628 IAASPLH-IDLTCVL-EHVIAELTAFLRKA-NRALRQATLGTMNSLV 671 (1219)
Q Consensus 628 i~~s~~~-~~~~~~l-~~~l~~L~~~L~~~-~~~lr~~al~~L~~l~ 671 (1219)
|+.++.. ..-+.|- ..++..+.++|+++ .-.++..|+..|..++
T Consensus 399 Ilmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLL 445 (652)
T PLN03205 399 IVMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLL 445 (652)
T ss_pred hhhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 8754311 1113333 26777888888876 4568888888887666
No 370
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=28.26 E-value=7.7e+02 Score=26.43 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=35.0
Q ss_pred CCChHHHHHHHHHHHHHHHhCchhhcccH--HHHHHHHHHhcc
Q 000934 265 ENDEELREYSLQALESFLLRCPRDISSYC--DEILHLTLEYLS 305 (1219)
Q Consensus 265 ~~d~elre~al~~l~~l~~~~~~~~~~~l--~~ii~~~l~~l~ 305 (1219)
-.++.+|-+++..++.++..-.+++-.|+ .+|+|+|++.|.
T Consensus 136 r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime 178 (293)
T KOG3036|consen 136 RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME 178 (293)
T ss_pred CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh
Confidence 46788999999999999999888887776 478999999873
No 371
>PF09462 Mus7: Mus7/MMS22 family; InterPro: IPR019021 Methyl methanesulphonate-sensitivity protein 22 (MMS22), along with MMS1, is involved in protection against replication-dependent DNA damage. MMS22 may act by restoring active replication forks, repairing unusual DNA structures, and/or preventing aberrant DNA rearrangement at arrested replication forks, including the repair of double-stranded DNA breaks created by the cleavage reaction of topoisomerase II [].
Probab=28.03 E-value=1.3e+03 Score=28.92 Aligned_cols=46 Identities=28% Similarity=0.170 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCCCCcchhHHHH
Q 000934 442 TKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEA 490 (1219)
Q Consensus 442 ~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~~~~~~~~~~a 490 (1219)
.| .-+..++..+++.-+..+.++-..++......|-... +.++.+.
T Consensus 469 ~r-kf~p~Fl~~ll~~d~~~f~~~~~~il~~wl~sLv~~~--~~l~~e~ 514 (614)
T PF09462_consen 469 RR-KFLPLFLANLLEHDPDDFSDCKESILELWLLSLVKRS--SSLKFEH 514 (614)
T ss_pred HH-HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhccc--hhHHHHH
Confidence 55 6667788888888888788888888888887776654 3455443
No 372
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=27.55 E-value=5.3e+02 Score=31.79 Aligned_cols=152 Identities=12% Similarity=0.146 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCC--------------CcchhhHHHHH
Q 000934 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG--------------KDQHRDIASIA 107 (1219)
Q Consensus 42 ~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~--------------~~~~r~~a~~a 107 (1219)
...+-+++.+...++|-+..+|-++.+.++....+++....+..++ ++..+... .++.--..+++
T Consensus 242 ~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~-ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~ 320 (993)
T COG5234 242 IYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID-IIELMTENMFLSPLENTCDIIITNELVWHGAIL 320 (993)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH-HHHhcccccchhhhhCccceeecchHHHHHHHH
Confidence 3456677888888888889999999999999999888765555555 44433211 01111122222
Q ss_pred HHHHHhhcCChhhhHHHHHhHhHHHHHhhhccC------CChhHHHHHHHHHHHHHHHhhhhhhHhHHH-HHHHHhh-hh
Q 000934 108 LKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKD------MNTEIRCECLDILCDVLHKFGNLMSNDHER-LLSALLP-QL 179 (1219)
Q Consensus 108 L~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~------~~~~v~~~al~~L~~l~~~~g~~l~~~~~~-l~~~ll~-~l 179 (1219)
.-.+. ++..-.+...+ +.|.+..++..++ ....+|..++.++=.+.++....+.+..+. +.-.+++ .+
T Consensus 321 ~~ala-~~~~id~~d~~---i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~al 396 (993)
T COG5234 321 FFALA-GAGLIDYSDCL---ILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTAL 396 (993)
T ss_pred HHHHh-hccccchhhhh---hhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhh
Confidence 21211 11110121111 3344444444322 123577778877777777766665544433 3444444 57
Q ss_pred cCChHHHHHHHHHHHHHHH
Q 000934 180 SANQASVRKKSVSCIASLA 198 (1219)
Q Consensus 180 ~~~~~~vrk~a~~~l~~l~ 198 (1219)
=||+-.+|+.|..++-.+.
T Consensus 397 FDpel~vRr~a~Aal~E~i 415 (993)
T COG5234 397 FDPELNVRRAATAALFEVI 415 (993)
T ss_pred cCchhhhhhHHHHHHHHHh
Confidence 7888899999888875443
No 373
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=26.53 E-value=5.3e+02 Score=25.06 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=48.0
Q ss_pred HHHHHHHHhc-ccCccchhhHHHHHHHHHHHhcchhhhhhh--hhhhHh-HHHhhcCCCC-cchhHHHHHHHHHHHhccC
Q 000934 427 IVKSINRQLR-EKSIKTKQVGAFSVLRELVVVLPDCLADHI--GSLIPG-IEKSLNDKSS-TSNLKIEALTFTRLVLSSH 501 (1219)
Q Consensus 427 lv~~l~~~L~-~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~--~~l~~~-l~~~l~d~~~-~~~~~~~al~~l~~l~~~~ 501 (1219)
.++++.+.++ ++++++. .-++.+|..++...|..|..++ ..++.. +.+.+..+.. ...++...+.++.......
T Consensus 39 a~ralkkRl~~~~n~~v~-l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEV-MLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHH-HHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 3566777776 3566666 6789999999998877765433 245554 5566654332 2367777787777765543
No 374
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=26.51 E-value=1.5e+03 Score=29.11 Aligned_cols=231 Identities=13% Similarity=0.136 Sum_probs=108.8
Q ss_pred HHHHHHHHhccCcc-----chhhHHHHHHHHHHhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhh---cCC
Q 000934 46 KLSNIVVQQLDDVA-----GDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAE---VTT 117 (1219)
Q Consensus 46 ~v~~~ll~~L~D~~-----~eVq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~---~~~ 117 (1219)
.+.-.+..+|..|. +.+|..=-..+..+..+-+......+++.++..+.+++++.|.=|...++.+-.. +..
T Consensus 77 ~~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~ 156 (727)
T PF12726_consen 77 ALLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPLKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITD 156 (727)
T ss_pred hHHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCch
Confidence 34555555555432 2344443444444443322222256677777777777777787777777765432 222
Q ss_pred hhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhh-hhHh------HHHHHHHHhhhhcCChHHHHHHH
Q 000934 118 SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL-MSND------HERLLSALLPQLSANQASVRKKS 190 (1219)
Q Consensus 118 ~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~-l~~~------~~~l~~~ll~~l~~~~~~vrk~a 190 (1219)
.++-..+.+.+...+... +....++.....-=..+.-+++.+... +..+ .+ +...++..|.+.....-.-.
T Consensus 157 ~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~-i~~L~~~hL~~~~~~~l~~l 234 (727)
T PF12726_consen 157 EEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDP-IYRLLLNHLSSNLSPPLPIL 234 (727)
T ss_pred hhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccch-HHHHHHHHhhcccchhHHHH
Confidence 223233444444444332 221112221111112233333333221 1111 23 67777777776633333455
Q ss_pred HHHHHHHHhhCCHHHHH--------HHHHHH---------HHHhhcCCCChHH--HHHHHHHHHHHHHHhh-hhhccchh
Q 000934 191 VSCIASLASSLSDDLLA--------KATIEV---------VRNLRSKGAKPEM--IRTNIQMVGALSRAVG-YRFGPHLG 250 (1219)
Q Consensus 191 ~~~l~~l~~~~~~~~~~--------~l~~~l---------l~~l~~~~~~~~~--~~~~i~~l~~l~~~~~-~~~~~~l~ 250 (1219)
+.|+..|....+.+++. .+++.+ +.....+...... ....+.=+..+.++.+ .+-.+-..
T Consensus 235 L~~l~~lL~k~~~~FW~~~~~~~p~~ild~If~np~f~~~L~~~~~~~~~~~~~~~~~~~sWi~pf~~SL~~~~~~~~~~ 314 (727)
T PF12726_consen 235 LRCLSILLEKLGSDFWDAMGPISPQVILDQIFDNPAFKKLLLQSQEDEISESDDDLPDLLSWISPFLRSLSPSQRSQACR 314 (727)
T ss_pred HHHHHHHHHhCHHHHhcccCCCCHHHHHHHHhCChHHHHHHHhhccCCccccchhhHHHHHHHHHHHHHhcccchhhHHH
Confidence 67888887777776543 122221 2221111111011 1123334444444443 22355667
Q ss_pred hhHHHHHHhhhccCCCChHHHHHHHHHHH
Q 000934 251 DTVPVLIDYCTSASENDEELREYSLQALE 279 (1219)
Q Consensus 251 ~iip~ll~~~~~~~~~d~elre~al~~l~ 279 (1219)
.++..+++.++.+ .-.++.|.+|+.+..
T Consensus 315 ~l~~~Ll~~~q~~-~~~~~~r~~c~~~~~ 342 (727)
T PF12726_consen 315 KLLHFLLERLQHD-RFPDEARAACLRAGL 342 (727)
T ss_pred HHHHHHHHHHhcc-ccchhHHHHHHHHHH
Confidence 7788888877753 233447777766443
No 375
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=26.00 E-value=1.5e+03 Score=30.50 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh
Q 000934 149 CLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASS 200 (1219)
Q Consensus 149 al~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~ 200 (1219)
++-.|.|++..-...+..+.|.++...+-.+++..+-|++.|-..|-+|...
T Consensus 936 alifL~dl~~~~~~~~~~~lP~LLH~~~~~lDH~~~~V~e~a~~lL~~Li~~ 987 (1120)
T PF14228_consen 936 ALIFLVDLAVEPDEDLREHLPLLLHVIFVLLDHYTPLVQEQARELLVNLIHS 987 (1120)
T ss_pred HHHHHHHHHcCCcchHhhhhHHHHHHHHHcccCCChHHHHHHHHHHHHHHHH
Confidence 6667888887667777789999999999999999999999999998877653
No 376
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.88 E-value=3.5e+02 Score=32.25 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhhHhHHHhhcCC
Q 000934 419 LLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDK 480 (1219)
Q Consensus 419 ~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~~~l~~~l~d~ 480 (1219)
.+++++|.++..|.+-+.+.. ++ -...++.-.+.++..+..+++.|-..|++.+.|.
T Consensus 489 llqevl~elle~I~~kl~~~~-k~----~sdv~a~sle~~g~Sl~a~lp~i~ktIIe~lsd~ 545 (705)
T KOG2307|consen 489 LLQEVLPELLESIWGKLHDIT-KV----FSDVFAQSLEKHGRSLDALLPQIDKTIIEMLSDV 545 (705)
T ss_pred HHHHHhHHHHHHHHhhccchh-hh----hHHHHHHHHHHhcccHHHHhhhHHHHHHHHHHHH
Confidence 678889999988887776533 11 1223443344456667777777777777666543
No 377
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=25.64 E-value=7.3e+02 Score=25.29 Aligned_cols=167 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHH
Q 000934 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1219)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~ 84 (1219)
.+..++.|++ +.--.....++.+..... ++.....+++.++....... .-....++.++.+....+......
T Consensus 3 ~v~~~lnklt---~~n~~~~~~~l~~~~~~~----~~~~~~~i~~~i~~~a~~~~-~~~~~~a~l~~~l~~~~~~~f~~~ 74 (209)
T PF02854_consen 3 KVRGILNKLT---PSNFESIIDELIKLNWSD----DPETLKEIVKLIFEKAVEEP-NFSPLYARLCAALNSRFPSEFRSL 74 (209)
T ss_dssp HHHHHHHHCS---STTHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHSG-GGHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hHHHHHHHCC---HHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHhhhhhcCc-hHHHHHHHHHHHHhccchhhHHHH
Q ss_pred HHHHHHHHhcC--------CCcchhhHHHHHHHHHHhhcCC-hhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHH
Q 000934 85 MTDKLCIKLLN--------GKDQHRDIASIALKTIIAEVTT-SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCD 155 (1219)
Q Consensus 85 l~~~L~~~~~~--------~~~~~r~~a~~aL~~~i~~~~~-~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~ 155 (1219)
+++.+...+.. .......--..++-.++.++-. .-+...+.-.++-.++........ +.-....++++..
T Consensus 75 ll~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~-~~~~~~~ie~~~~ 153 (209)
T PF02854_consen 75 LLNRCQEEFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQ-PPPDEENIECLCT 153 (209)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCC-HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhccccccc-CCCcHhHHHHHHH
Q ss_pred HHHHhhhhhh--HhHHHHHHHHhhhhc
Q 000934 156 VLHKFGNLMS--NDHERLLSALLPQLS 180 (1219)
Q Consensus 156 l~~~~g~~l~--~~~~~l~~~ll~~l~ 180 (1219)
++...|..+. +..+..++.++..++
T Consensus 154 lL~~~G~~l~~~~~~~~~l~~~~~~~~ 180 (209)
T PF02854_consen 154 LLKTCGKKLENSEESPKALDEIFERLQ 180 (209)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHH
No 378
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=25.62 E-value=6.2e+02 Score=27.54 Aligned_cols=160 Identities=14% Similarity=0.163 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchh--hhhh---hhhhhHhHHHhhcCCCCcchhHHHHHHHHHHHh
Q 000934 424 VSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDC--LADH---IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVL 498 (1219)
Q Consensus 424 ~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~--l~~~---~~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~ 498 (1219)
.+.....+.+.+..+....+ ..++.+++-++...+.. +... ....+..+.....+. .....+.-++.++..++
T Consensus 61 ~~~~~~~~~~~~~~Wp~~~~-fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~ml~lR~l~NlF 138 (268)
T PF08324_consen 61 LSAWLILLLKILLSWPPESR-FPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSS-SPPANQMLALRLLANLF 138 (268)
T ss_dssp HHHHHHHHHHHHCCS-CCC--HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTT-SSHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhCCCccc-hhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCC-CcHHHHHHHHHHHHHhh
Confidence 33444555555556555677 88888887766542221 1111 122222222222222 23456677888888887
Q ss_pred ccCCCC-Cchhhhh-hhHHHHHHHhcCC---chHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHHHHHHHHHhhhcC
Q 000934 499 SSHSPP-VFHPYIK-ALSSPVLAAVGER---YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQD 573 (1219)
Q Consensus 499 ~~~~~~-~~~~~l~-~i~p~l~~~l~d~---~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d 573 (1219)
.+.... .+..+.. .++..+....... +..++..+-.++-++.-...... .-.+.-.+++..+.+.+....
T Consensus 139 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~-----~~~~~~~~ll~~i~~~~~~~~ 213 (268)
T PF08324_consen 139 SHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNR-----SDEEWQSELLSSIIEVLSREE 213 (268)
T ss_dssp TSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCT-----S-CCHHHHHHHHHHHHCHCCH
T ss_pred CCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHhcccc
Confidence 653221 1112333 3444444333332 34555555555556644332211 112333345666666444444
Q ss_pred CCHHHHHHHHHHHHHHH
Q 000934 574 QDQEVKECAISCMGLVI 590 (1219)
Q Consensus 574 ~d~~vr~~Ai~alg~l~ 590 (1219)
.|.|..-+++-|+|.++
T Consensus 214 ~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 214 SDEEALYRLLVALGTLL 230 (268)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 57899999999999988
No 379
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.59 E-value=6.4e+02 Score=30.07 Aligned_cols=88 Identities=14% Similarity=0.252 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhccch--hhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhC
Q 000934 208 KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1219)
Q Consensus 208 ~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1219)
+.+..|.+.+.+... .+...++.++.++++.||+.|...+ ..+++-++...... +.+-.+|+-++..+++|-..+
T Consensus 38 eAvralkKRi~~k~s--~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~-~~~~~Vr~kiL~LI~~W~~af 114 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNS--KVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNK-PRDLKVREKILELIDTWQQAF 114 (470)
T ss_pred HHHHHHHHHhccCCc--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccC-CcchhHHHHHHHHHHHHHHHc
Confidence 455556666665443 5667889999999999999988655 45677777766653 267889999999999998877
Q ss_pred chhhcccHHHHHHH
Q 000934 286 PRDISSYCDEILHL 299 (1219)
Q Consensus 286 ~~~~~~~l~~ii~~ 299 (1219)
+. ...|+++.-..
T Consensus 115 ~~-~~~~~~~~~~~ 127 (470)
T KOG1087|consen 115 CG-PDGYLPDYYQI 127 (470)
T ss_pred cC-CCCcchhHHHH
Confidence 63 34455554433
No 380
>PRK13689 hypothetical protein; Provisional
Probab=25.42 E-value=1.7e+02 Score=24.57 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=30.9
Q ss_pred HhhhcChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhh
Q 000934 73 LVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAE 114 (1219)
Q Consensus 73 l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~ 114 (1219)
...++++++++.++..|+.-+...+.. .|.+.++|+.++.+
T Consensus 3 i~SKYsd~qvE~il~el~~VLeKH~Ap-~DLSLMvLGN~vTn 43 (75)
T PRK13689 3 QQSKYSDEQVEQLLAELLAVLEKHKAP-TDLSLMVLGNMVTN 43 (75)
T ss_pred ccccccHHHHHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHH
Confidence 345788899999999999888644332 57888888877654
No 381
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=25.02 E-value=1.6e+02 Score=24.95 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHH--HHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHh
Q 000934 618 RLTAVKAFAVIAASPLHIDLTCVLE--HVIAELTAFLR-KANRALRQATLGTMNSLVVAY 674 (1219)
Q Consensus 618 r~~a~~al~~i~~s~~~~~~~~~l~--~~l~~L~~~L~-~~~~~lr~~al~~L~~l~~~~ 674 (1219)
.++++.+++.++.++.+ -++++ .+++.+..... .+...+|..++-+|+.+....
T Consensus 4 lKaaLWaighIgss~~G---~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLG---IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHH---HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 35678888888866544 33333 46666666655 456789999999999988653
No 382
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.66 E-value=38 Score=41.82 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=10.6
Q ss_pred CCcchhhhhHHHHHHHh
Q 000934 16 KDKDFRYMATSDLLNEL 32 (1219)
Q Consensus 16 ~d~d~R~mAl~dL~~~l 32 (1219)
+||.+|.-||+-+.+.+
T Consensus 674 ~Dpei~~~AL~vIincV 690 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCV 690 (1516)
T ss_pred cCHHHHHHHHhhhheee
Confidence 36666666666665554
No 383
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=24.47 E-value=3.7e+02 Score=35.19 Aligned_cols=93 Identities=24% Similarity=0.339 Sum_probs=58.0
Q ss_pred CCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHHHhhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhh
Q 000934 1017 DQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSC 1096 (1219)
Q Consensus 1017 D~~~~vR~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~elir~v~mgpfkh~~Ddgle~Rk~a~e~l~~ll~~~ 1096 (1219)
-+|.+||..|+.-|.++. -+.+.++||++...|.-++..+..++| -||.-|
T Consensus 901 fPDqeVR~~AVqwi~~ls---~DeL~d~LPQlVQALK~E~yl~S~Lv~--------------------------FLL~rs 951 (1639)
T KOG0905|consen 901 FPDQEVRAHAVQWIARLS---NDELLDYLPQLVQALKFELYLKSALVQ--------------------------FLLSRS 951 (1639)
T ss_pred CCcHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHhccCHHHH--------------------------HHHHHH
Confidence 478899999999776643 245667777777776666655443322 356666
Q ss_pred hcCCCchhchHHHHhcccCC-cchhHhhHHHHHHHHHhhCchhHH
Q 000934 1097 LDQVNPSSFIVPYLKSGLED-HYDVKMPCHLILSKLADKCPSAVL 1140 (1219)
Q Consensus 1097 ~~~~~~~~~~~~~~~~gl~D-~~di~~l~~~~l~~l~~~~p~~~~ 1140 (1219)
+..+++...+.=.+..++.| +-+++- -.+|..|...|-..+.
T Consensus 952 l~sl~~ah~lYWlLk~~l~d~qfs~rY--q~ll~aLl~~~gk~L~ 994 (1639)
T KOG0905|consen 952 LVSLQFAHELYWLLKDALDDSQFSLRY--QNLLAALLDCCGKNLR 994 (1639)
T ss_pred hcchHHHHHHHHHHhhccccceeehHH--HHHHHHHHHHhCHHHH
Confidence 66777776552134677777 666553 3456777766655444
No 384
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=24.31 E-value=98 Score=31.21 Aligned_cols=43 Identities=16% Similarity=0.299 Sum_probs=34.9
Q ss_pred HHHhcCC--CchhHhHHHHHHHHhhhhcCcccchHHHHHHhcccc
Q 000934 858 IIESFQS--PFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQ 900 (1219)
Q Consensus 858 ll~~l~~--~~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~ 900 (1219)
.+.+|+. +++.||.-|..+|..+....+..|||++++.++-++
T Consensus 74 aLeLL~~~f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~ 118 (171)
T cd00872 74 ALELLDCNFPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLKYEP 118 (171)
T ss_pred HHHHCCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccc
Confidence 3444542 368999999999999888888999999999998654
No 385
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=23.72 E-value=9.5e+02 Score=25.96 Aligned_cols=41 Identities=37% Similarity=0.447 Sum_probs=28.2
Q ss_pred HHHHhhccCCCh--HHHHHHHHHHHHHHhcCchh---hhchhhhhh
Q 000934 1009 SSFLMLIKDQDR--HVRRAAVLALSTFAHNKPNL---IKGLLPELL 1049 (1219)
Q Consensus 1009 ~~~l~~l~D~~~--~vR~~a~~~L~~~~~~~p~~---i~~~l~~ll 1049 (1219)
..+...+.|++. =||.+|+.+|...++.+|.. +..++..++
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll 159 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELL 159 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344456777665 49999999999999988763 344444444
No 386
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=23.67 E-value=1.3e+03 Score=27.49 Aligned_cols=167 Identities=20% Similarity=0.290 Sum_probs=87.7
Q ss_pred HHhccccCCCChHHHHHHHHHHHHhc----------cCccchhhHHHHHHHHHHhhhcChhh--H--HHHHHHHHHHhcC
Q 000934 30 NELNKESFKADADLEVKLSNIVVQQL----------DDVAGDVSGLAVKCLAPLVKKVSEPR--V--VEMTDKLCIKLLN 95 (1219)
Q Consensus 30 ~~l~~~~~~~~~~~~~~v~~~ll~~L----------~D~~~eVq~~A~k~l~~l~~~~~~~~--~--~~l~~~L~~~~~~ 95 (1219)
+.+.++....++-..++-+..|++.- .+++.+|...|.|||+.++-.-+.-+ . ....+.++..+..
T Consensus 6 RiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~ 85 (446)
T PF10165_consen 6 RILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKN 85 (446)
T ss_pred HHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHc
Confidence 44555544445544455555666544 46778999999999998874322211 1 1445566666654
Q ss_pred CCc--chhhHHHHHHHHHHh--hcCChhhhHHH------HHhHhHHHHHhhhcc---C--------CChhHHHHHHHHHH
Q 000934 96 GKD--QHRDIASIALKTIIA--EVTTSSLAQSI------HTSLTPQLTKGITLK---D--------MNTEIRCECLDILC 154 (1219)
Q Consensus 96 ~~~--~~r~~a~~aL~~~i~--~~~~~~~~~~~------~~~l~p~L~~~l~~~---~--------~~~~v~~~al~~L~ 154 (1219)
..+ ...++-.+.+|-++- .... .....+ ...|+..|-..++.. . .+.....+++.++.
T Consensus 86 ~~~~~~~~d~~Fl~~RLLFLlTa~~~-~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllF 164 (446)
T PF10165_consen 86 YSDSSQPSDVEFLDSRLLFLLTALRP-DDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLF 164 (446)
T ss_pred ccccCCChhHHHHHHHHHHHHhcCCh-hHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHH
Confidence 321 134455556664321 1111 122122 222333333222210 0 13445666777777
Q ss_pred HHHHHhhhhh----hHhHHHHHHHHhhhh---cCCh--HHHHHHHHHHHHHH
Q 000934 155 DVLHKFGNLM----SNDHERLLSALLPQL---SANQ--ASVRKKSVSCIASL 197 (1219)
Q Consensus 155 ~l~~~~g~~l----~~~~~~l~~~ll~~l---~~~~--~~vrk~a~~~l~~l 197 (1219)
.+...++... .+..+.++..+...+ ..+. ......++.+|..+
T Consensus 165 Nit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 165 NITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred HhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 7776666542 345666777766662 2222 25788888888766
No 387
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=23.61 E-value=2.2e+02 Score=24.10 Aligned_cols=54 Identities=20% Similarity=0.224 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhh-CCHHHHH--HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh
Q 000934 187 RKKSVSCIASLASS-LSDDLLA--KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV 241 (1219)
Q Consensus 187 rk~a~~~l~~l~~~-~~~~~~~--~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~ 241 (1219)
.|.|+=|+|+++.. .+-.+++ ++++.+++...+.+. -.+|-+++-++|-++++.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v-~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPV-LSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCc-cchHHHHHHHHHHHhCCH
Confidence 57788999999865 2333444 588888888776553 378999999999998864
No 388
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=23.46 E-value=4.1e+02 Score=30.20 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=75.5
Q ss_pred hhhHhHHHHHhhccCCChHHHHHHHHHHHHHHh-cCchhhhchhhh------hhHHHHHhhhcccccceeeeccCceeec
Q 000934 1003 IIFPEISSFLMLIKDQDRHVRRAAVLALSTFAH-NKPNLIKGLLPE------LLPLLYDQTIVKKELIRTVDLGPFKHTV 1075 (1219)
Q Consensus 1003 ~l~~~i~~~l~~l~D~~~~vR~~a~~~L~~~~~-~~p~~i~~~l~~------llp~l~~~~~~~~elir~v~mgpfkh~~ 1075 (1219)
.|+..+..+-.+|+.....+...++..|..++. +.+...+..+.. .+|.+....+...+- .-++..
T Consensus 53 iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~-------~~~~~~ 125 (330)
T PF11707_consen 53 ILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEK-------DSESSK 125 (330)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccc-------cccccc
Confidence 455557777788888878888899999999998 777877766643 444444322111110 001111
Q ss_pred ccChhHHHHHHHHHHHHHhhhh-----cCCCchhchHHHHhcccCC-cchhHhhHHHHHHHHHh
Q 000934 1076 DDGLELRKAAFECVDTLLDSCL-----DQVNPSSFIVPYLKSGLED-HYDVKMPCHLILSKLAD 1133 (1219)
Q Consensus 1076 Ddgle~Rk~a~e~l~~ll~~~~-----~~~~~~~~~~~~~~~gl~D-~~di~~l~~~~l~~l~~ 1133 (1219)
.+ ..+|.+....+-+++...- +-+.-..++ ..+.+|+.+ .+++.......|-+=+-
T Consensus 126 ~~-~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~-~~l~k~l~~D~~~~v~~iL~~l~~~Vl 187 (330)
T PF11707_consen 126 SK-PSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLM-SALFKGLRKDPPETVILILETLKDKVL 187 (330)
T ss_pred cC-cCHHHHHHHHHHHHHccCCHHHHHHHHHcCchH-HHHHhcccCCCHHHHHHHHHHHHHHhc
Confidence 11 3899999999999998751 123334455 478888875 66655444444544333
No 389
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=23.06 E-value=72 Score=31.99 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=31.0
Q ss_pred chhHhHHHHHHHHhhhhcCcccchHHHHHHhcccc
Q 000934 866 FEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQ 900 (1219)
Q Consensus 866 ~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~ 900 (1219)
++.||.-|..+|..+....+..|+|++++.++-++
T Consensus 84 d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLkyE~ 118 (169)
T cd00869 84 DQEVRAHAVQWLARLSNDELLDYLPQLVQALKFEL 118 (169)
T ss_pred ChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccc
Confidence 57899999999999888888899999999998664
No 390
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=22.55 E-value=1.5e+03 Score=27.92 Aligned_cols=192 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCc--hhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCccccCCCCCChhHHHHHHH
Q 000934 347 RAAAKCLAALIVSRP--EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV 424 (1219)
Q Consensus 347 ~~Aa~~l~~li~~~~--~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~ 424 (1219)
...+-.|+.+-...| -.+..+...++..++.-+.-.++.+|..++-++..++.... ...+
T Consensus 257 e~~~~~L~~l~~l~~~~~~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~------------------~~~l 318 (661)
T KOG2256|consen 257 EVLAFTLRHLTVLVPFLATFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFK------------------STCL 318 (661)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhh------------------hHHH
Q ss_pred HHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhh-----------hhhhhhhhHhHHHhhcCCCCcchhHHHHHHH
Q 000934 425 SKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCL-----------ADHIGSLIPGIEKSLNDKSSTSNLKIEALTF 493 (1219)
Q Consensus 425 p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l-----------~~~~~~l~~~l~~~l~d~~~~~~~~~~al~~ 493 (1219)
.++++.....+...+..+. ...+..+.-|-..+-.-+ --|+.++--.+-.+|..++..+.-.+--..+
T Consensus 319 ~~vlk~mY~afv~nsk~~~-~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqf 397 (661)
T KOG2256|consen 319 DPVLKTMYLAFVRNSKFVT-VNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQY 397 (661)
T ss_pred HHHHHHHHHHHHHhCCCCC-CcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q ss_pred HHHH-------h-ccCCCCCchhhhhhhHHHHHHHhc----CCchHHHHHHHHHHHHHHHhccCCccCCCCCCcccHHHH
Q 000934 494 TRLV-------L-SSHSPPVFHPYIKALSSPVLAAVG----ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPI 561 (1219)
Q Consensus 494 l~~l-------~-~~~~~~~~~~~l~~i~p~l~~~l~----d~~~~v~~~al~~l~~l~~~l~~~~~~~~~~~~~~l~~l 561 (1219)
+.++ . .....+.++|.+-+++..+..++. -.++..|-..+..+-.+++. ...|.|..+.+
T Consensus 398 i~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~s--------sg~fIPi~~ll 469 (661)
T KOG2256|consen 398 VHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRS--------SGTFIPLSPLL 469 (661)
T ss_pred HHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhh--------cCceeecHHHH
Q ss_pred HHHH
Q 000934 562 YNAI 565 (1219)
Q Consensus 562 ~~~l 565 (1219)
++.+
T Consensus 470 ~Eml 473 (661)
T KOG2256|consen 470 VEML 473 (661)
T ss_pred HHHH
No 391
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=22.48 E-value=1.3e+03 Score=27.92 Aligned_cols=174 Identities=13% Similarity=0.139 Sum_probs=93.0
Q ss_pred HHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcChhhHHHH-----HHHHHHHhcCCCc-
Q 000934 25 TSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEM-----TDKLCIKLLNGKD- 98 (1219)
Q Consensus 25 l~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~~~~~~l-----~~~L~~~~~~~~~- 98 (1219)
+.+..+++.++.+---..+-......+...+..+|+.-|-.|.|.+..+.... ....++ +..|.+.+.++..
T Consensus 62 te~nrn~i~ng~iL~l~~sp~~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~--~fa~efi~~~gl~~L~~liedg~~~ 139 (713)
T KOG2999|consen 62 TEKNRNEIKNGFILQLCASPSHYAKRIMEILTEGNNISKMEALKELDSLSLDP--TFAEEFIRCSGLELLFSLIEDGRVC 139 (713)
T ss_pred ehhhhhcccCCcEEEeecCchHHHHHHHHHHhCCCcHHHHHHHHHHhhccccH--HHHHHHHhcchHHHHHHHHHcCccc
Confidence 34555555544211111223445566677778999999999999999886431 122222 3344555545443
Q ss_pred chhhHHHHHHHHHHhhcCC-----hhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhhH--hHHHH
Q 000934 99 QHRDIASIALKTIIAEVTT-----SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN--DHERL 171 (1219)
Q Consensus 99 ~~r~~a~~aL~~~i~~~~~-----~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~--~~~~l 171 (1219)
-.+++-+..|+++++-+.- ..+...+...+...+ .++. -+..+-..|+.+|..+.-+... +.. ..+..
T Consensus 140 ~~~~~L~~~L~af~elmehgvvsW~~~~~~fV~~~a~~V--~~~~--~~a~~~~~AL~~LE~~vl~s~~-~~~~v~eev~ 214 (713)
T KOG2999|consen 140 MSSELLSTSLRAFSELMEHGVVSWESVSNDFVVSMASYV--NAKR--EDANTLLAALQMLESLVLGSDT-LRQLVAEEVP 214 (713)
T ss_pred hHHHHHHHHHHHHHHHHhhceeeeeecccHHHHHHHHHH--hhhh--hcccchHHHHHHHHHHHhCChH-HHHHHHhcCc
Confidence 2456777777777653321 111122222222222 1111 1355777788877776543221 111 11234
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHH
Q 000934 172 LSALLPQLSANQASVRKKSVSCIASLASSLSDDL 205 (1219)
Q Consensus 172 ~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~ 205 (1219)
++.++..++..+..+...|+..+..+...++++.
T Consensus 215 i~~li~hlq~~n~~i~~~aial~nal~~~a~~~~ 248 (713)
T KOG2999|consen 215 IETLIRHLQVSNQRIQTCAIALLNALFRKAPDDK 248 (713)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHhhCChHH
Confidence 5566666766666666668888887777777663
No 392
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=22.47 E-value=1.2e+02 Score=27.52 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=36.7
Q ss_pred hHhHHHHHHhhhhccCcc--------cchHHHHHHh--cCCCchhhHHHHhhhHhhhccCCc
Q 000934 947 VRNVVAECLGKIALIEPA--------KLVPALKVRT--TSSAAFTRATVVIAIKYSIVERPE 998 (1219)
Q Consensus 947 ~r~~~ae~LG~l~~~~p~--------~~lp~l~~~l--~~~~~~~R~~~~~~~k~~~~~~~~ 998 (1219)
.|......+|.++..++. .-+|.+.... .+.+|.+|..++-++|+++....+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 355566677777765543 2356666654 367899999999999999987653
No 393
>PF06393 BID: BH3 interacting domain (BID); InterPro: IPR010479 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. BID is a member of the Bcl-2 superfamily of proteins that are key regulators of programmed cell death, hence this family is related to the Apoptosis regulator Bcl-2 protein BH domain. BID is a pro-apoptotic member of the Bcl-2 superfamily and as such posses the ability to target intracellular membranes and contains the BH3 death domain. The activity of BID is regulated by a Caspase 8-mediated cleavage event, exposing the BH3 domain and significantly changing the surface charge and hydrophobicity, which causes a change of cellular localisation [].; GO: 0043065 positive regulation of apoptosis, 0005737 cytoplasm; PDB: 2BID_A 1ZY3_B 2KBW_B 1DDB_A 2VOI_B.
Probab=22.38 E-value=1.5e+02 Score=29.98 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccch-hhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhc
Q 000934 225 EMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDIS 290 (1219)
Q Consensus 225 ~~~~~~i~~l~~l~~~~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~ 290 (1219)
+..+..|+-++.=....|+++...+ |.++..+...+.+.+-.+++-|.....+++.++..+|.++.
T Consensus 79 E~qEEiir~IA~qLAqIGD~me~sI~p~lV~~La~qf~n~~LseEdrr~~LAaavq~lmqt~P~Dme 145 (196)
T PF06393_consen 79 ESQEEIIRRIARQLAQIGDRMERSIQPSLVNNLAQQFRNSNLSEEDRRRCLAAAVQQLMQTVPKDME 145 (196)
T ss_dssp -SHHHCHHHHHHHHHHHHHHHHCC-TTTTHHHHHHHHHSCCCCCCCCCHHHHHHHHHHHCCS-STCH
T ss_pred cchHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHCCccHH
Confidence 4555666666654455666666655 66777777666644323444566667778888888886544
No 394
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=22.03 E-value=78 Score=31.78 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=31.1
Q ss_pred chhHhHHHHHHHHhhhhcCcccchHHHHHHhcccc
Q 000934 866 FEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQ 900 (1219)
Q Consensus 866 ~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~ 900 (1219)
++.||..|..+|..+....+..|||++++.++-++
T Consensus 91 ~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~ 125 (166)
T cd00870 91 NPVVRKYAVSRLKLASDEELLLYLLQLVQALKYEN 125 (166)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 68999999999999888888999999999997654
No 395
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=22.00 E-value=3.4e+02 Score=28.38 Aligned_cols=91 Identities=12% Similarity=0.179 Sum_probs=61.6
Q ss_pred HHHHHHhhhhccCcccchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHhhccCCChHHHHHHHHH
Q 000934 950 VVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLA 1029 (1219)
Q Consensus 950 ~~ae~LG~l~~~~p~~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~D~~~~vR~~a~~~ 1029 (1219)
.+...+|.+.. +++.+.+.+.+...+++...|.+++.+.-....++. . ..+..-....+.|++.-|+.+.-=+
T Consensus 101 ~~~~i~g~~~~-~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~--~----~~l~~~~~~~~~d~e~fI~KAiGW~ 173 (208)
T cd07064 101 LAKVVGGILLA-DYPEFEPVMDEWSTDENFWLRRTAILHQLKYKEKTD--T----DLLFEIILANLGSKEFFIRKAIGWA 173 (208)
T ss_pred HHHHHhHHHHh-CChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccC--H----HHHHHHHHHhCCChHHHHHHHHHHH
Confidence 34455566554 445557888888888888888666655433333321 1 1122223346778888899998888
Q ss_pred HHHHHhcCchhhhchhhh
Q 000934 1030 LSTFAHNKPNLIKGLLPE 1047 (1219)
Q Consensus 1030 L~~~~~~~p~~i~~~l~~ 1047 (1219)
|...+...|+.+.+++.+
T Consensus 174 LRe~~k~d~~~V~~fl~~ 191 (208)
T cd07064 174 LREYSKTNPDWVRDFVAA 191 (208)
T ss_pred HHHHhccCHHHHHHHHHH
Confidence 999999999999999855
No 396
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.87 E-value=1.4e+03 Score=27.37 Aligned_cols=262 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred hhhHhhhhhhccCc-cchhhHHHHHHHHhhcCCCCchHHHHHHHHHHHhh--hccCCCCCccchHHHHHHhcCCCch--h
Q 000934 794 IAQCVAVLCLAAGD-QKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEI--GRRKDLSSHEHIENVIIESFQSPFE--E 868 (1219)
Q Consensus 794 ~a~~i~~i~~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~laL~~Lgei--g~~~~~~~~~~l~~~ll~~l~~~~e--~ 868 (1219)
.|..+|.-..+.+. ++.+..+.-+-.+++ +.+...+..+++.||-. |... +++.+.+.+...+.+- +
T Consensus 431 aGaLLGig~s~~~v~~E~~palalLs~yl~---s~s~k~~~aaiLGlg~afsGt~~-----eevl~lL~Pi~~std~pie 502 (881)
T COG5110 431 AGALLGIGLSGLRVFEERPPALALLSNYLQ---SSSSKHVIAAILGLGAAFSGTQA-----EEVLELLQPIMFSTDSPIE 502 (881)
T ss_pred ccceeeeeecccccccccchHHHHHHHhcc---CCchHHHHHHHhhhHHhhcCCcH-----HHHHHHhhhhhcCCCCcHH
Q ss_pred HhHHHHHHHHhhhhcC-----cccchHHHHHHhccccchhHHHHHHHHHHHhhccccchhhhhHHHHHH-----------
Q 000934 869 IKSAASYALGNIAVGN-----LSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKI----------- 932 (1219)
Q Consensus 869 vR~aAa~aLG~l~~~~-----~~~~lp~il~~l~~~~~~~~~~l~alkeii~~~~~~~~~~~~~~~~~i----------- 932 (1219)
+---|+.+||.+..|. .+..+..++++-+.+.+.++.-..+|+-.+.--++ .+..+...+.|
T Consensus 503 ~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~--~d~~d~v~eti~aIeg~ls~~~ 580 (881)
T COG5110 503 VVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALGLASLFYGR--KDQVDDVEETIMAIEGALSKHE 580 (881)
T ss_pred HHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHccc--cchhHHHHHHHHHhcchhhhhH
Q ss_pred -----------------HHHHHhhccCCccch---HhHHHHHHhhhhc--------cCcccchHHHHHHhcCCCchhhHH
Q 000934 933 -----------------LNLLFNHCESEEEGV---RNVVAECLGKIAL--------IEPAKLVPALKVRTTSSAAFTRAT 984 (1219)
Q Consensus 933 -----------------~~~L~~~~~~~~e~~---r~~~ae~LG~l~~--------~~p~~~lp~l~~~l~~~~~~~R~~ 984 (1219)
++.|+..++++.-+. .....+.+|-|.+ +..+-++-++...+.=.++.+|.+
T Consensus 581 eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~ 660 (881)
T COG5110 581 EILVKGCQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSV 660 (881)
T ss_pred HHHHhhceecccCcHHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHH
Q ss_pred HHhhhHhhhccCCchhhhhhhHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHHHhhhcccccce
Q 000934 985 VVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIR 1064 (1219)
Q Consensus 985 ~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~D~~~~vR~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~elir 1064 (1219)
+=-+..-+-...++ ..++..+-....|.|.+|-..+..+++- -...-...++.++|-+++.
T Consensus 661 ~PLa~gils~SnPQ------m~vfDtL~r~shd~dl~v~~ntIfamGL---iGAGT~NaRlaqlLrQlaS---------- 721 (881)
T COG5110 661 LPLAYGILSPSNPQ------MNVFDTLERSSHDGDLNVIINTIFAMGL---IGAGTLNARLAQLLRQLAS---------- 721 (881)
T ss_pred HHHHHhcccCCCcc------hHHHHHHHHhccccchhHHHHHHHHhhc---cccCcchHHHHHHHHHHHH----------
Q ss_pred eeeccCceeecccChhHHHHHHHHHH
Q 000934 1065 TVDLGPFKHTVDDGLELRKAAFECVD 1090 (1219)
Q Consensus 1065 ~v~mgpfkh~~Ddgle~Rk~a~e~l~ 1090 (1219)
|-||..+.+-+-|.|-+.++
T Consensus 722 ------YY~kes~aLfv~riAQGLl~ 741 (881)
T COG5110 722 ------YYYKESKALFVLRIAQGLLS 741 (881)
T ss_pred ------HHhhccchhhHHHHHHHHHH
No 397
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=21.50 E-value=1.8e+03 Score=28.45 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcC
Q 000934 189 KSVSCIASLASSLSDDLLAKATIEVVRNLRSK 220 (1219)
Q Consensus 189 ~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~ 220 (1219)
.-..|++.++.+.-++.|+.+++.++..+++.
T Consensus 104 q~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~ 135 (947)
T COG5657 104 QNALAVSRIARLDFPDEWPTLVPDLLSLLSEK 135 (947)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHhhhccc
Confidence 55778888888887888999999999988773
No 398
>PF14961 BROMI: Broad-minded protein
Probab=21.04 E-value=9.3e+02 Score=32.06 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=46.2
Q ss_pred HHHHHHHHhcC-CCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcC
Q 000934 5 QMAAILEKITG-KDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS 78 (1219)
Q Consensus 5 ~l~~ll~~~~~-~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~ 78 (1219)
.++-+++++.- --+++|.-|+.-|++.=-.+-. +.+.=..+.+.|...|.||++.+...+.+..+.+....+
T Consensus 162 ~lq~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVl--s~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSp 234 (1296)
T PF14961_consen 162 QLQLIADKLDPGQPKEVRLEALQILCSAPPSDVL--SCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSP 234 (1296)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhcCChhhcc--ccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCc
Confidence 45566666632 2346788888887755322222 234455667778888888888888888887777765433
No 399
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=20.75 E-value=1.7e+03 Score=27.78 Aligned_cols=156 Identities=22% Similarity=0.215 Sum_probs=87.4
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHH---HHHHHHHHHHH-----hhcCCC---ChHH-HHHHHHHHH
Q 000934 168 HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL---LAKATIEVVRN-----LRSKGA---KPEM-IRTNIQMVG 235 (1219)
Q Consensus 168 ~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~---~~~l~~~ll~~-----l~~~~~---~~~~-~~~~i~~l~ 235 (1219)
.+.+++.+...+.+....+|=.+...++.+...++... |-+++++.... ++.+-+ .++. -..++..++
T Consensus 244 l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a 323 (993)
T COG5234 244 LEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA 323 (993)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH
Confidence 45667777777777677889889998888888777653 33344444333 333211 1122 222333333
Q ss_pred HHHHHhhhhhccchhhhHHHHHHhhhccC-----CCChHHHHHHHHHHHHHHHhCchhhcccHHHHHH-HHHHhcccCCC
Q 000934 236 ALSRAVGYRFGPHLGDTVPVLIDYCTSAS-----ENDEELREYSLQALESFLLRCPRDISSYCDEILH-LTLEYLSYDPN 309 (1219)
Q Consensus 236 ~l~~~~~~~~~~~l~~iip~ll~~~~~~~-----~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~-~~l~~l~~dpn 309 (1219)
++...|...+..+ +.|.+...+.-+. -+...+|+++.=.+.++.+...+.+.+-+.+.+- ++++-.-+||.
T Consensus 324 -la~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpe 400 (993)
T COG5234 324 -LAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPE 400 (993)
T ss_pred -Hhhccccchhhhh--hhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCch
Confidence 5555555544433 4455544444210 1233588877655566665555555555555443 33332224542
Q ss_pred CCCCCCCCcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhc
Q 000934 310 FTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS 359 (1219)
Q Consensus 310 ~~~~~d~d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~ 359 (1219)
-.|||+|+.+|-.++..
T Consensus 401 ---------------------------------l~vRr~a~Aal~E~iGR 417 (993)
T COG5234 401 ---------------------------------LNVRRAATAALFEVIGR 417 (993)
T ss_pred ---------------------------------hhhhhHHHHHHHHHhcc
Confidence 37999999998888876
No 400
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=20.68 E-value=5.1e+02 Score=26.53 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=56.4
Q ss_pred eecccChhHHHHHHHHHHHHHhhhhcCCCchhchHHHHhcccCC-cchhHhhHHHHHHHHHhhCchhHHHhHHHhhHH
Q 000934 1073 HTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLED-HYDVKMPCHLILSKLADKCPSAVLAVLDSLVDP 1149 (1219)
Q Consensus 1073 h~~Ddgle~Rk~a~e~l~~ll~~~~~~~~~~~~~~~~~~~gl~D-~~di~~l~~~~l~~l~~~~p~~~~~~l~~l~~~ 1149 (1219)
...++..=.|++|+.++...... .-++..++ +.+...+.| ++-|++-..-.|..+...+|..+...+.+....
T Consensus 113 w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l-~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~~~~ 186 (197)
T cd06561 113 WAKSENEWVRRAAIVLLLRLIKK---ETDFDLLL-EIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKNGLS 186 (197)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHh---cccHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Confidence 35567788899998877665443 35677788 588887887 666999888899999999999998877666443
No 401
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=20.23 E-value=8.1e+02 Score=25.89 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHhccCC
Q 000934 485 NLKIEALTFTRLVLSSHS 502 (1219)
Q Consensus 485 ~~~~~al~~l~~l~~~~~ 502 (1219)
.+-...+.++..++..|.
T Consensus 53 ~if~~~~~ll~~il~~hr 70 (223)
T PF10441_consen 53 SIFISLCRLLSSILRHHR 70 (223)
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 455566777777877764
No 402
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=20.00 E-value=1.4e+03 Score=26.43 Aligned_cols=33 Identities=15% Similarity=0.038 Sum_probs=21.3
Q ss_pred HHHHHHHhccCc----cchhhHHHHHHHHHHhhhcCh
Q 000934 47 LSNIVVQQLDDV----AGDVSGLAVKCLAPLVKKVSE 79 (1219)
Q Consensus 47 v~~~ll~~L~D~----~~eVq~~A~k~l~~l~~~~~~ 79 (1219)
.+..+.+-+.-+ +.+.-.....|+|.+++.++.
T Consensus 66 Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~ 102 (373)
T PF14911_consen 66 YFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSP 102 (373)
T ss_pred HHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcch
Confidence 334444444444 778888888888888876554
Done!