Query 000934
Match_columns 1219
No_of_seqs 307 out of 1740
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 15:51:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000934.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_704-707//hhsearch_pdb/000934hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 1.0 1 1 1242.3 100.7 1203 1-1219 1-1218(1230)
2 1u6g_C TIP120 protein, CAND1; 1.0 1 1 462.5 65.7 284 48-379 8-305 (1230)
3 4fdd_A Transportin-1; heat rep 1.0 1 1 378.3 60.3 489 5-595 14-516 (852)
4 1qgr_A Protein (importin beta 1.0 1 1 359.0 68.5 635 5-714 2-722 (876)
5 2bpt_A Importin beta-1 subunit 1.0 1 1 358.8 68.7 659 1-738 1-732 (861)
6 2bpt_A Importin beta-1 subunit 1.0 1 1 342.6 59.1 577 48-714 6-627 (861)
7 1qgr_A Protein (importin beta 1.0 1 1 329.3 52.1 782 49-1039 4-875 (876)
8 4fdd_A Transportin-1; heat rep 1.0 1 1 319.3 66.3 759 39-1096 7-786 (852)
9 1b3u_A Protein (protein phosph 1.0 1 1 291.0 44.9 573 4-713 10-586 (588)
10 1b3u_A Protein (protein phosph 1.0 1 1 285.5 47.6 459 125-673 47-510 (588)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=1242.30 Aligned_cols=1203 Identities=44% Similarity=0.734 Sum_probs=1071.7
Q ss_pred CCH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 911--889999988149992025653999999751035778768899999999985038641036889998998742059
Q 000934 1 MAN--LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS 78 (1219)
Q Consensus 1 ~~~--~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~l~D~~~~Vq~~A~~~l~~l~~~~~ 78 (1219)
|++ +.+..+|+++.|+|+|+|+||++||.+.++.+.+..++...+++++.+++.+.|++.+||+.|++|++.++..++
T Consensus 1 ~~~~~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~ 80 (1230)
T 1u6g_C 1 MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK 80 (1230)
T ss_dssp ---CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 98367699999975589878599999999999974166578756799999999998669998999999999999997587
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 2239999999999850899420418987999998205970----246999995869898742015887468978999999
Q 000934 79 EPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS----SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILC 154 (1219)
Q Consensus 79 ~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~----~~~~~~~~~i~p~L~~~l~~~~~~~~v~~~~~~~L~ 154 (1219)
++++..+++.|+..+.++++.+|..++.+|+.++..++.. .....+++.++|.|+.++.+.+ ++.++..++++++
T Consensus 81 ~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~-~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE-DVSVQLEALDIMA 159 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHH
T ss_conf 989999999999986698388999999999999996797444441178899999999999875788-4679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99998303223769999999943103891889999999999989617999999999999998511899847899999999
Q 000934 155 DVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMV 234 (1219)
Q Consensus 155 ~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~l 234 (1219)
++++.+|..+.+|.+.+++.+++.+.++++.+|++|+.+++.++...++..+..+++.++..+.+..+ ...|+.+++++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~-~~~r~~a~~~l 238 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS-MSTTRTYIQCI 238 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS-SCSCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHH
T ss_conf 99998276778879999999999875996899999999999999856899999999999998616775-56899999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99997723311051454699999850006889768999999999999973911110108989999988515698989988
Q 000934 235 GALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNM 314 (1219)
Q Consensus 235 ~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~ 314 (1219)
+.+++..|.+|.||++.++|.+++.++ ++++++|+.++++++.|+..+++++.||++.+++.++++++|||++..++
T Consensus 239 ~~l~~~~~~~~~~~l~~l~~~ll~~l~---d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~ 315 (1230)
T 1u6g_C 239 AAISRQAGHRIGEYLEKIIPLVVKFCN---VDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDD 315 (1230)
T ss_dssp HHHHHHSSGGGTTSCTTHHHHHHHHHS---SCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999998689899889999999999866---89778999999999999997848777768999999999827899888764
Q ss_pred CCCC-CCCCC--CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 8776-31013--34210000378887786528999999999999882073016988988879998520654156898999
Q 000934 315 EEDS-DDEAY--EEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVF 391 (1219)
Q Consensus 315 d~d~-~~~~~--~e~~dd~~~~~~~dddD~swkVR~~A~~~l~~li~~~~~~l~~~~~~i~p~Li~~~~e~~e~Vr~~~~ 391 (1219)
|+++ ++.++ +++++++.+++|++++|.+|+||++|+.+++.++...|+.+.++++.++|.++.+++|+++.||..++
T Consensus 316 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~ 395 (1230)
T 1u6g_C 316 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVF 395 (1230)
T ss_dssp -----------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 41101122334465301100136664555677999999999999997466679999999989999871798657999999
Q ss_pred HHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99999999706667666677----78873679988878999999998310682203667999999999836413455365
Q 000934 392 NTFIELVRQTGNVTKGQIDN----NELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIG 467 (1219)
Q Consensus 392 ~~l~~li~~~~~~~~~~~~~----~~~~p~~~L~~~lp~li~~l~~~l~~~~~~~r~~~~~~lL~~l~~~~~~~l~~~~~ 467 (1219)
.++..+++..+....|..+. ...+|...+..++|.+++.+.+.++++++++| ++++.+++.++...++.+.+|++
T Consensus 396 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr-~~~~~~L~~l~~~~~~~l~~~l~ 474 (1230)
T 1u6g_C 396 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTR-QCCFNMLTELVNVLPGALTQHIP 474 (1230)
T ss_dssp HHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHH-HHHHHHHHHHHHHSTTTTGGGHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 99999999724243434675201356455999998746999999998613778799-99999999999976110577799
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 44676998603778862168999999999860499987334255648999998528865789999999999988505786
Q 000934 468 SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSV 547 (1219)
Q Consensus 468 ~l~~~i~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~i~~~l~d~~~~v~~~al~~l~~l~~~~~~~~ 547 (1219)
.+++.+...+.|++....++.+++..+..++..++++.+.||++.++|.+...++|+.++++.+++.+++.+++.+++..
T Consensus 475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~ 554 (1230)
T 1u6g_C 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLD 554 (1230)
T ss_dssp HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999974878851689999999999998389887886799999999999714246899999999999998716755
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 67788971008989999999753038898789999999999999403443531443799999852388417879999999
Q 000934 548 EGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAV 627 (1219)
Q Consensus 548 ~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~Vr~~Ai~~lg~l~~~~g~~l~~~l~~~l~~L~~~L~~e~~r~~ai~al~~ 627 (1219)
......+.||++.+++.++..+...|.+.++|+.|+.|+|.++.+.|+.+.++++.+++.|.+.+.++.+|..++++++.
T Consensus 555 ~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~ 634 (1230)
T 1u6g_C 555 QPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTL 634 (1230)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 56532327899999999999873269988999999999999999827032443889999999884453059999999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 86188988545899999999999999841499999999999999870788880118989999731049997132599999
Q 000934 628 IAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALE 707 (1219)
Q Consensus 628 ia~s~~~~~l~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~ 707 (1219)
++.+..+.++.+|++.+++.|...++++++.+|.+++.|++.++.+++..+....+.+++..+.+++++.|.+....+++
T Consensus 635 i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~ 714 (1230)
T 1u6g_C 635 IAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAIS 714 (1230)
T ss_dssp HTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 98185644368889999999999998678889999999999999604333898999999999876357541878999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999310168982257575512899999942101101337999999999985149--8858999998504799999841
Q 000934 708 LCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSAN--TSFDTLLDSLLSSAKPSPQSGG 785 (1219)
Q Consensus 708 ~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~~~l~~~~~--~~~~~l~~~ll~~~~~~~~~~~ 785 (1219)
++..+++. .|.....+.+.++|.++.+++++.+++.++.++..+++.++..++ ..++++++.+++.....+ ...
T Consensus 715 ~L~~l~~~---~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~-~~~ 790 (1230)
T 1u6g_C 715 FLTTLAKV---YPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQS-TAL 790 (1230)
T ss_dssp HHHHHTTS---CGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC-----
T ss_pred HHHHHHHH---CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC-CCC
T ss_conf 99999884---91267776776899999997586210578999999999998347887889999999850035788-732
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 14444443446766452115863034479999998410799856889999999976312689998510499999732899
Q 000934 786 VAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSP 865 (1219)
Q Consensus 786 l~~~a~~~~a~~i~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~laL~~Lgeig~~~~~~~~~~l~~~l~~~~~~~ 865 (1219)
.+++++..+++|+|.++...++. ...+++.|...+++ +...+..+.+++.++|++|++.++...+++.+.+++.|.++
T Consensus 791 ~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~g~~~~~~~~~~l~~~~~~~l~~~ 868 (1230)
T 1u6g_C 791 THKQSYYSIAKCVAALTRACPKE-GPAVVGQFIQDVKN-SRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSP 868 (1230)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCCC-SHHHHTTTTTTTTT-TTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGGCS
T ss_pred CCCHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 00010489999999999846566-68999999998378-87667999999999998615678765641899999984799
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 54576789999886541195362698999730022205899999999996324442010048999999999942069961
Q 000934 866 FEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEE 945 (1219)
Q Consensus 866 ~e~vR~aAa~aLG~l~~~~~~~~lp~il~~i~~~~~~~~~~l~alkeii~~~~~~~~~~~~~~~~~i~~~L~~~~~~~ee 945 (1219)
+++||.+|+.|||.++.++++.|+|.+++.+.++++.|+.+++||+|++.+.+ ...+.|+..+||+.|+..+++.++
T Consensus 869 ~~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~~~---~~~~~~~~~~i~~~L~~~~~~~~~ 945 (1230)
T 1u6g_C 869 SEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSAS---VVGLKPYVENIWALLLKHCECAEE 945 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSC---STTTHHHHHHHHHHHTTCCCCSST
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 77899999999687752699988999999872660324988999999982387---666776699999999987338304
Q ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 05769999995510248664069999981588700237877556764225981134514674999996404898579999
Q 000934 946 GVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRA 1025 (1219)
Q Consensus 946 ~vr~~~ae~LG~l~~~~p~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~L~~~i~~~l~~l~d~~~~VR~~ 1025 (1219)
++|+.+++|+|+++..+|+.++|.|.+.+.+.++.+|.++++++++++.+.+..+++++.++++.|+++++|++.+||++
T Consensus 946 ~~r~~~a~~lg~l~~~~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~ 1025 (1230)
T 1u6g_C 946 GTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRV 1025 (1230)
T ss_dssp THHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 46899998875665067688889999985699788999999999999706823358989998999998648985879999
Q ss_pred HHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHC
Q ss_conf 99999988730841111024456687887631122100245216830240568457998999999999620137992001
Q 000934 1026 AVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSF 1105 (1219)
Q Consensus 1026 a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~elir~v~mgpfkh~~Ddgle~Rk~a~e~l~~ll~~~~~~~~~~~~ 1105 (1219)
|+.+|++++|++|.++.++++.++|.||+++.+++++||+|+||||||++|||+++||+||+|||+++++|.+++++.+|
T Consensus 1026 a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~ 1105 (1230)
T 1u6g_C 1026 ALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEF 1105 (1230)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999999842857689779889899998830268760133058960236774899999999999999988874789999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 37987323688503586589999999812903699968884498985621367751124555438999999999999952
Q 000934 1106 IVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLN 1185 (1219)
Q Consensus 1106 ~~~~~~~gl~D~~di~~l~~~~l~~l~~~~p~~~~~~l~~l~~~l~~~l~~k~k~~~~kqe~e~~~e~~rs~lr~~~~l~ 1185 (1219)
+ ++|+.||+|++|||++||.||.||+..+|..+.+++|+++++|+++|++|+|++|||||+||++|++||++||+.+|+
T Consensus 1106 ~-~~~~~gl~d~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~ 1184 (1230)
T 1u6g_C 1106 L-NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALL 1184 (1230)
T ss_dssp H-HHHHHTTSSCHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred H-HHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9-999804676688999999999999840879899999999999999984114634365248899999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 0039987826999999996292059999987619
Q 000934 1186 QISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 1219 (1219)
Q Consensus 1186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1219 (1219)
++|+++++|+|++|++++++|++|+.+|++|++|
T Consensus 1185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1218 (1230)
T 1u6g_C 1185 TIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218 (1230)
T ss_dssp SSCSCSSSSSCCCCCHHHHHHHHHTC--------
T ss_pred HCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 0788422748999999998077899999999987
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=462.49 Aligned_cols=284 Identities=12% Similarity=0.149 Sum_probs=125.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99999850386410368899989987420----59223999999999985089942041898799999820597024699
Q 000934 48 SNIVVQQLDDVAGDVSGLAVKCLAPLVKK----VSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQS 123 (1219)
Q Consensus 48 ~~~ll~~l~D~~~~Vq~~A~~~l~~l~~~----~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~ 123 (1219)
+..++..+.++++++|.+|..-+...... ..+.....+++.|+..+.+.+..+|..+..+|+.++..++. .
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-----~ 82 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-----Y 82 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-----H
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH-----H
T ss_conf 99999755898785999999999999741665787567999999999986699989999999999999975879-----8
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Q ss_conf 9995869898742015887468978999999999983032------23769999999943103-8918899999999999
Q 000934 124 IHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL------MSNDHERLLSALLPQLS-ANQASVRKKSVSCIAS 196 (1219)
Q Consensus 124 ~~~~i~p~L~~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~------l~~~~~~ll~~ll~~l~-~~~~~vrk~a~~~l~~ 196 (1219)
....+++.++.++.++ ++.+|..++.+++.++..++.. ...+++.+++.++..+. ++++.+|..|+.+++.
T Consensus 83 ~~~~i~~~Ll~~l~d~--~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSD--KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HHHHHHHHHHHHTTCS--SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 9999999999986698--38899999999999999679744444117889999999999987578846799999999999
Q ss_pred HHHHCCHH---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 89617999---999999999998511899847899999999999977233110514546999998500068897689999
Q 000934 197 LASSLSDD---LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREY 273 (1219)
Q Consensus 197 l~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~ 273 (1219)
++...+.. +++.+++.++..+.+++ ..+|+.++.+++.++...+..+ ++.+++.+++.+... .+..+|..
T Consensus 161 ~~~~~~~~l~~~~~~ll~~l~~~L~~~~--~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~--~~~~~r~~ 233 (1230)
T 1u6g_C 161 MLSRQGGLLVNFHPSILTCLLPQLTSPR--LAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKN--DSMSTTRT 233 (1230)
T ss_dssp HHHHTCSSCTTTHHHHHHHHGGGGGCSS--HHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHT--CSSCSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHCCC--CCHHHHHH
T ss_conf 9998276778879999999999875996--8999999999999998568999---999999999986167--75568999
Q ss_pred HHHHHHHHHHHCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999973911110108989999988515698989988877631013342100003788877865289999999999
Q 000934 274 SLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCL 353 (1219)
Q Consensus 274 al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~e~~dd~~~~~~~dddD~swkVR~~A~~~l 353 (1219)
+++++..++...|+.+.||++.+++.+++.+. |+ .+.||+.+..++
T Consensus 234 a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~-d~---------------------------------~~~vR~~a~~~l 279 (1230)
T 1u6g_C 234 YIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN-VD---------------------------------DDELREYCIQAF 279 (1230)
T ss_dssp HHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHS-SC---------------------------------CTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC---------------------------------CHHHHHHHHHHH
T ss_conf 99999999998689899889999999999866-89---------------------------------778999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99882073016988988879998520
Q 000934 354 AALIVSRPEMLSKLYEEACPKLIDRF 379 (1219)
Q Consensus 354 ~~li~~~~~~l~~~~~~i~p~Li~~~ 379 (1219)
+.++...++.+.+++..++|.++..+
T Consensus 280 ~~l~~~~~~~~~~~l~~li~~ll~~l 305 (1230)
T 1u6g_C 280 ESFVRRCPKEVYPHVSTIINICLKYL 305 (1230)
T ss_dssp HHHHHCTTCCCHHHHHHHHHHHTTCC
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999784877776899999999982
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=378.29 Aligned_cols=489 Identities=14% Similarity=0.153 Sum_probs=283.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH----HCCHH
Q ss_conf 89999988149992025653999999751035778768899999999985038641036889998998742----05922
Q 000934 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK----KVSEP 80 (1219)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~l~D~~~~Vq~~A~~~l~~l~~----~~~~~ 80 (1219)
.|.++|+...|+|++.|.-|...|.+. .. .+. ....+-.++..+.+.+..||..|.-.+...+. .++++
T Consensus 14 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~-~~-----~p~-~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~ 86 (852)
T 4fdd_A 14 QILQLLKESQSPDTTIQRTVQQKLEQL-NQ-----YPD-FNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNG 86 (852)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHH-TT-----SHH-HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-HH-----CCC-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 999999987394989999999999998-70-----998-89999999856688986799999999999898744779999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 39999999999850899420418987999998205970246999995869898742015887468978999999999983
Q 000934 81 RVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKF 160 (1219)
Q Consensus 81 ~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~i~p~L~~~l~~~~~~~~v~~~~~~~L~~l~~~~ 160 (1219)
....+-+.|+..+.+++..+|..++.++..+...-+. ..|..++|.|.+.+.+. ++.++..++.+|+.+++.+
T Consensus 87 ~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-----~~wp~ll~~L~~~l~~~--~~~~r~~al~~L~~i~~~~ 159 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL-----QNWPDLLPKLCSLLDSE--DYNTCEGAFGALQKICEDS 159 (852)
T ss_dssp HHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-----TTCTTHHHHHHHHHSCS--SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999987499899999999999999986481-----35689999999987099--9899999999999999985
Q ss_pred HHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 03223-----7699999999431038918899999999999896179999---999999999985118998478999999
Q 000934 161 GNLMS-----NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL---LAKATIEVVRNLRSKGAKPEMIRTNIQ 232 (1219)
Q Consensus 161 g~~l~-----~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~---~~~l~~~l~~~l~~~~~~~~~~~~~i~ 232 (1219)
+..+. .....+++.++..+.+++..+|..|+.+++.+....++.. +..+++.++..+.+++ .++|+.+++
T Consensus 160 ~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~--~~vr~~a~~ 237 (852)
T 4fdd_A 160 AEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEE--PEVRKNVCR 237 (852)
T ss_dssp TTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCC--HHHHHHHHH
T ss_pred HHHHCHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHH
T ss_conf 787563431332999999999985679789999999999999864638799889999999998717997--789999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH--CCHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 9999997723311051454699999850006889768999999999999973--91111010898999998851569898
Q 000934 233 MVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR--CPRDISSYCDEILHLTLEYLSYDPNF 310 (1219)
Q Consensus 233 ~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~--~~~~~~~~l~~ii~~~l~~l~~dpn~ 310 (1219)
+++.++...|..+.||++.+++.+++.++ +.++++|..+++++..+++. +.+.+.||++.+++.+++.+.|.+.
T Consensus 238 ~L~~l~~~~~~~~~~~l~~l~~~l~~~~~---~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~- 313 (852)
T 4fdd_A 238 ALVMLLEVRMDRLLPHMHNIVEYMLQRTQ---DQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDI- 313 (852)
T ss_dssp HHHHHHHHCHHHHGGGHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHH-
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHH-
T ss_conf 99999985779899889999999998706---99689999999999998603657988788898899999987578676-
Q ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99888776310133421000037888778652899999999999988207301698898887999852065415689899
Q 000934 311 TDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDV 390 (1219)
Q Consensus 311 ~~~~d~d~~~~~~~e~~dd~~~~~~~dddD~swkVR~~A~~~l~~li~~~~~~l~~~~~~i~p~Li~~~~e~~e~Vr~~~ 390 (1219)
| ...-+ .|.++|+++||+..+|.||++|+.+++.+....++ .....++|.+...+++.++.+|..+
T Consensus 314 ------d-~~~~~----~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa 379 (852)
T 4fdd_A 314 ------D-IILLK----GDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKESG 379 (852)
T ss_dssp ------H-HHHHH----C------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred ------H-HHHHC----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf ------7-99866----98443222456401116999999999999874618---7899999999998559988999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99999999970666766667778873679988878999999998310682203667999999999836413455365446
Q 000934 391 FNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLI 470 (1219)
Q Consensus 391 ~~~l~~li~~~~~~~~~~~~~~~~~p~~~L~~~lp~li~~l~~~l~~~~~~~r~~~~~~lL~~l~~~~~~~l~~~~~~l~ 470 (1219)
+.+++.+.+.. ...+..+++.+++.+.+.++++++.+| ..+..+++.++...
T Consensus 380 ~~alg~i~~~~---------------~~~~~~~l~~~l~~l~~~l~d~~~~Vr-~~a~~~l~~l~~~~------------ 431 (852)
T 4fdd_A 380 ILVLGAIAEGC---------------MQGMIPYLPELIPHLIQCLSDKKALVR-SITCWTLSRYAHWV------------ 431 (852)
T ss_dssp HHHHHHTTTTT---------------HHHHGGGHHHHHHHHHHHTTCSSHHHH-HHHHHHHHHTHHHH------------
T ss_pred HHHHHHHHHCC---------------HHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHH------------
T ss_conf 99999998635---------------688998799999999987179988999-99999999999886------------
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 76998603778862168999999999860499987334255648999998528865789999999999988505786677
Q 000934 471 PGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGL 550 (1219)
Q Consensus 471 ~~i~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~i~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~ 550 (1219)
++....+|+..+++.++..+.|..++++..|+.+++.+++..++
T Consensus 432 -------------------------------~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~----- 475 (852)
T 4fdd_A 432 -------------------------------VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT----- 475 (852)
T ss_dssp -------------------------------HHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG-----
T ss_pred -------------------------------CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-----
T ss_conf -------------------------------11047899999999999998589888999999999999997367-----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 889710089899999997530388987899999999999994034
Q 000934 551 GFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD 595 (1219)
Q Consensus 551 ~~~~~~~l~~l~~~ll~~l~~~d~d~~Vr~~Ai~~lg~l~~~~g~ 595 (1219)
.+.||++.+++.++..+... +......++.+++.++...|+
T Consensus 476 --~l~~~l~~ll~~L~~~l~~~--~~~~~~~~~~ai~~l~~~~~~ 516 (852)
T 4fdd_A 476 --ELVPYLAYILDTLVFAFSKY--QHKNLLILYDAIGTLADSVGH 516 (852)
T ss_dssp --GGGGGHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHGG
T ss_pred --HHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHH
T ss_conf --66767999999999999883--747999999999999997424
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=358.97 Aligned_cols=635 Identities=12% Similarity=0.100 Sum_probs=483.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHH--------
Q ss_conf 89999988149992025653999999751035778768899999999985038--64103688999899874--------
Q 000934 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD--VAGDVSGLAVKCLAPLV-------- 74 (1219)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~l~D--~~~~Vq~~A~~~l~~l~-------- 74 (1219)
.+..+|+...++|++.|..|...|.+. .. .....+...|+..+.+ ++..||..|..++...+
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~-~~-------~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERA-AV-------ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHH-HH-------CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 689999976298989999999999998-71-------6804699999999857899879999999999876055434767
Q ss_pred -------HHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf -------2059223999999999985089942041898799999820597024699999586989874201588746897
Q 000934 75 -------KKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRC 147 (1219)
Q Consensus 75 -------~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~i~p~L~~~l~~~~~~~~v~~ 147 (1219)
..+.+.....+.+.|+..+.+++... ..++.++..+.....+ ...|..++|.|.+.+.+.+.++.+|.
T Consensus 74 ~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~----~~~w~~ll~~l~~~l~~~~~~~~~r~ 148 (876)
T 1qgr_A 74 AQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP----VNQWPELIPQLVANVTNPNSTEHMKE 148 (876)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG----GTCCTTHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 899864406999999999999999867994788-9999999999984676----22568899999998708898799999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHCCHHH----H-HHHHHHHHHHHHC
Q ss_conf 8999999999983-0322376999999994310389--18899999999999896179999----9-9999999998511
Q 000934 148 ECLDILCDVLHKF-GNLMSNDHERLLSALLPQLSAN--QASVRKKSVSCIASLASSLSDDL----L-AKATIEVVRNLRS 219 (1219)
Q Consensus 148 ~~~~~L~~l~~~~-g~~l~~~~~~ll~~ll~~l~~~--~~~vrk~a~~~l~~l~~~~~~~~----~-~~l~~~l~~~l~~ 219 (1219)
.++.+++.+++.+ +..+.++.+.+++.+...+.++ +..+|..|+.+++.++...+... + +.+++.+...+.+
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 228 (876)
T 1qgr_A 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (876)
T ss_dssp HHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999987458766786799999999986167999889999999999999999999887178999999999987179
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC-------------
Q ss_conf 8998478999999999999772331105145-46999998500068897689999999999999739-------------
Q 000934 220 KGAKPEMIRTNIQMVGALSRAVGYRFGPHLG-DTVPVLIDYCTSASENDEELREYSLQALESFLLRC------------- 285 (1219)
Q Consensus 220 ~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~-~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~------------- 285 (1219)
+ +.++|..++++++.++...+..|.||+. .+++.++.... ++++++|..+++++..++...
T Consensus 229 ~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 303 (876)
T 1qgr_A 229 P--DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK---SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (876)
T ss_dssp S--SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9--8899999999999999986999998877899999999963---8734999999999999988787676651001124
Q ss_pred --------CHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf --------111101089899999885156989899888776310133421000037888778652899999999999988
Q 000934 286 --------PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALI 357 (1219)
Q Consensus 286 --------~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~e~~dd~~~~~~~dddD~swkVR~~A~~~l~~li 357 (1219)
.....++++.+++.+++.+.... + |++|.+|++|++|+.+++.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~-----~----------------------d~~~~~~~~r~~a~~~l~~l~ 356 (876)
T 1qgr_A 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQD-----E----------------------NDDDDDWNPCKAAGVCLMLLA 356 (876)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHHHHTTCCC-----S----------------------SCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-----C----------------------CCCCCCCHHHHHHHHHHHHHH
T ss_conf 7775420189999989887079998753133-----4----------------------445452179999999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 20730169889888799985206541568989999999999970666766667778873679988878999999998310
Q 000934 358 VSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE 437 (1219)
Q Consensus 358 ~~~~~~l~~~~~~i~p~Li~~~~e~~e~Vr~~~~~~l~~li~~~~~~~~~~~~~~~~~p~~~L~~~lp~li~~l~~~l~~ 437 (1219)
...++ ..+..++|.+...+++.++.+|..++.+++.+..... | ..+..+++.+++.+.+.+++
T Consensus 357 ~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~-------------~-~~~~~~~~~~l~~l~~~l~d 419 (876)
T 1qgr_A 357 TCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-------------P-SQLKPLVIQAMPTLIELMKD 419 (876)
T ss_dssp HHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-------------H-HHHHHHHHHHHHHHHHHHTC
T ss_pred HHCCH---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC-------------H-HHHHHHHHHHHHHHHHHHCC
T ss_conf 87758---6699999999988469982899999999999974887-------------7-78999999999999998679
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-------------
Q ss_conf 6822036679999999998364134--5536544676998603778862168999999999860499-------------
Q 000934 438 KSIKTKQVGAFSVLRELVVVLPDCL--ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS------------- 502 (1219)
Q Consensus 438 ~~~~~r~~~~~~lL~~l~~~~~~~l--~~~~~~l~~~i~~~l~d~~~~~~~~~~al~~l~~l~~~~~------------- 502 (1219)
+++.+| ..++.+++.++...+... .++++.+++.+...+.+. +.++..++.+++.++...+
T Consensus 420 ~~~~vr-~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 495 (876)
T 1qgr_A 420 PSVVVR-DTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADVADDQEEPA 495 (876)
T ss_dssp SSHHHH-HHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCC
T ss_pred CCHHHH-HHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 978999-99999999999857201144777999999999987588---88999999999999998502012344445554
Q ss_pred CCCCHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--------
Q ss_conf 9873342556489999985288---65789999999999988505786677889710089899999997530--------
Q 000934 503 PPVFHPYIKALSSPVLAAVGER---YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN-------- 571 (1219)
Q Consensus 503 ~~~~~~~l~~l~p~i~~~l~d~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~-------- 571 (1219)
.+.+.||++.++|.+...+.+. ...++..++.+++.++...+ ....+++..+++.++..+..
T Consensus 496 ~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~-------~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 568 (876)
T 1qgr_A 496 TYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA-------KDCYPAVQKTTLVIMERLQQVLQMESHI 568 (876)
T ss_dssp CCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC-------STTHHHHHHHHHHHHHHHHHHHTTTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 032157699999999999727674204699999999999999774-------3118999999999999999999887124
Q ss_pred -CCCC----HHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf -3889----8789999999999999403-443531443799999852388----41787999999986188988545899
Q 000934 572 -QDQD----QEVKECAISCMGLVISTFG-DNLGAELPACLPVLVDRMGNE----ITRLTAVKAFAVIAASPLHIDLTCVL 641 (1219)
Q Consensus 572 -~d~d----~~Vr~~Ai~~lg~l~~~~g-~~l~~~l~~~l~~L~~~L~~e----~~r~~ai~al~~ia~s~~~~~l~~~~ 641 (1219)
++.| .++|..++.+++.++...| +.+.++++.+++.+...+++. .++..++.+++.++... +.++.+|+
T Consensus 569 ~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~ 647 (876)
T 1qgr_A 569 QSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL-GGEFLKYM 647 (876)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH-GGGGGGGH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 88635999999999999999999998285420578999999999999853688885089999999999998-76099999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999984-14999999999999998707888801189899997310499--971325999999999931
Q 000934 642 EHVIAELTAFLRKA-NRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISD--SDLHMTALALELCCTLMA 714 (1219)
Q Consensus 642 ~~~l~~L~~~L~~~-~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~--~d~~~~~~al~~l~~l~~ 714 (1219)
+.+++.+...++.. +..+|..++.+++.|+...+..+.+ .++.+++.+...+++ .+..++..++.+++.++.
T Consensus 648 ~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 648 EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIP-FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999998758650879999999999999988785464-59999999999748712338763999999999999
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=358.82 Aligned_cols=659 Identities=12% Similarity=0.138 Sum_probs=508.2
Q ss_pred CCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHH--
Q ss_conf 9118899999881-49992025653999999751035778768899999999985038--641036889998998742--
Q 000934 1 MANLQMAAILEKI-TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD--VAGDVSGLAVKCLAPLVK-- 75 (1219)
Q Consensus 1 ~~~~~l~~ll~~~-~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~l~D--~~~~Vq~~A~~~l~~l~~-- 75 (1219)
|....+.++|+.+ .++|++.|.+|...|.+. ... ....+...++..+.+ .+.+||..|...+...+.
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~-~~~-------~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~ 72 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKL-SND-------NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSK 72 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHH-HHH-------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCS
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHH-------CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 98779999999742693979999999999999-851-------9999999999998378998679999999987022575
Q ss_pred -------------H-CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -------------0-59223999999999985089942041898799999820-59702469999958698987420158
Q 000934 76 -------------K-VSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAE-VTTSSLAQSIHTSLTPQLTKGITLKD 140 (1219)
Q Consensus 76 -------------~-~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~-~~~~~~~~~~~~~i~p~L~~~l~~~~ 140 (1219)
. ++++....+-+.|+..+.+++...|..++.++..+... .|. ..|..++|.|++.+.+.+
T Consensus 73 w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~-----~~w~~ll~~L~~~l~~~~ 147 (861)
T 2bpt_A 73 DSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH-----GAWPELMKIMVDNTGAEQ 147 (861)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-----TCCHHHHHHHHHHTSTTS
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHCCC
T ss_conf 748789999767662999999999999999877996379999999999999846764-----554999999999872689
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHCCHHH-----HHHHH
Q ss_conf 87468978999999999983032---2376999999994310389--18899999999999896179999-----99999
Q 000934 141 MNTEIRCECLDILCDVLHKFGNL---MSNDHERLLSALLPQLSAN--QASVRKKSVSCIASLASSLSDDL-----LAKAT 210 (1219)
Q Consensus 141 ~~~~v~~~~~~~L~~l~~~~g~~---l~~~~~~ll~~ll~~l~~~--~~~vrk~a~~~l~~l~~~~~~~~-----~~~l~ 210 (1219)
++.++..++.+++.+++.++.. +.++.+.+++.+...+.++ +..||..|+.+++.++...+... ...++
T Consensus 148 -~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll 226 (861)
T 2bpt_A 148 -PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLM 226 (861)
T ss_dssp -CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf -7899999999999999727843567898899999999984157999878999999999999999998706766899999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-----
Q ss_conf 9999985118998478999999999999772331105145-4699999850006889768999999999999973-----
Q 000934 211 IEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG-DTVPVLIDYCTSASENDEELREYSLQALESFLLR----- 284 (1219)
Q Consensus 211 ~~l~~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~-~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~----- 284 (1219)
+.+...+.+++ .+.|+.++.+++.++...|..|.+|+. .+++.++..+. +.++++|..++.++..++..
T Consensus 227 ~~l~~~~~~~~--~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~vr~~a~~~l~~l~~~~~~~~ 301 (861)
T 2bpt_A 227 QVVCEATQAED--IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK---SPNDKVASMTVEFWSTICEEEIDIA 301 (861)
T ss_dssp HHHHHHHTCSC--HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTT---CSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999865998--899999999999999998899999889999999999873---7727899999999999998788643
Q ss_pred ------------CCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ------------91111010898999998851569898998887763101334210000378887786528999999999
Q 000934 285 ------------CPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKC 352 (1219)
Q Consensus 285 ------------~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~e~~dd~~~~~~~dddD~swkVR~~A~~~ 352 (1219)
++....++++.+++.++..+.+.. + |++|..|.+|++|+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~------------------~---------d~~d~~~~~r~~a~~~ 354 (861)
T 2bpt_A 302 YELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN------------------E---------DPEDDDWNVSMSAGAC 354 (861)
T ss_dssp HHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC------------------C---------C-CCCCCHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC------------------C---------CCCCCCCCHHHHHHHH
T ss_conf 332103577325699999999889999999987066------------------5---------3012468689999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99988207301698898887999852065415689899999999999706667666677788736799888789999999
Q 000934 353 LAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSIN 432 (1219)
Q Consensus 353 l~~li~~~~~~l~~~~~~i~p~Li~~~~e~~e~Vr~~~~~~l~~li~~~~~~~~~~~~~~~~~p~~~L~~~lp~li~~l~ 432 (1219)
++.+....++ ..+..++|.+...+.+.++.+|..++.+++.+.+..+ + ..+.++++.+++.+.
T Consensus 355 L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~-------------~-~~~~~~l~~il~~l~ 417 (861)
T 2bpt_A 355 LQLFAQNCGN---HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD-------------K-VQRTYYVHQALPSIL 417 (861)
T ss_dssp HHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-------------H-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCH---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC-------------H-HHHHHHHHHHHHHHH
T ss_conf 9999987408---6899999999987579972699999999999985998-------------7-888998999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC---CCCCH
Q ss_conf 983106822036679999999998364134--5536544676998603778862168999999999860499---98733
Q 000934 433 RQLREKSIKTKQVGAFSVLRELVVVLPDCL--ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS---PPVFH 507 (1219)
Q Consensus 433 ~~l~~~~~~~r~~~~~~lL~~l~~~~~~~l--~~~~~~l~~~i~~~l~d~~~~~~~~~~al~~l~~l~~~~~---~~~~~ 507 (1219)
+.+.++++.+| ..++.+++.++...+..+ .++++.++|.+...+.+. +.++..++..+..+++..+ +..+.
T Consensus 418 ~~l~d~~~~vr-~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~l~ 493 (861)
T 2bpt_A 418 NLMNDQSLQVK-ETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPSPIY 493 (861)
T ss_dssp HGGGCSCHHHH-HHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSCGGG
T ss_pred HHCCCCCHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 88289959999-99999999999873540487888999999999976447---289999999999999862313542468
Q ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-------------
Q ss_conf 425564899999852--88657899999999999885057866778897100898999999975303-------------
Q 000934 508 PYIKALSSPVLAAVG--ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ------------- 572 (1219)
Q Consensus 508 ~~l~~l~p~i~~~l~--d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~------------- 572 (1219)
||++.+++.+...+. |....++..++.+++.++...+. ...+|+..+++.+++.+...
T Consensus 494 ~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~-------~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~ 566 (861)
T 2bpt_A 494 NFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD-------TVAETSASISTFVMDKLGQTMSVDENQLTLEDA 566 (861)
T ss_dssp GGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG-------GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9999999999999857586158999999999999997626-------569999999999999999887532013885567
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8898789999999999999403443531443799999852388---4178799999998618898854589999999999
Q 000934 573 DQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE---ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELT 649 (1219)
Q Consensus 573 d~d~~Vr~~Ai~~lg~l~~~~g~~l~~~l~~~l~~L~~~L~~e---~~r~~ai~al~~ia~s~~~~~l~~~~~~~l~~L~ 649 (1219)
+...++|..++.+++.++...|..+.++.+.+++.+...+++. ..|..++.+++.++... +.++.+|++.+++.+.
T Consensus 567 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~-~~~~~~~l~~i~~~l~ 645 (861)
T 2bpt_A 567 QSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASL-GKGFEKYLETFSPYLL 645 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHH-GGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 779999999999999999985563478999999999999746788757999999999999997-6609999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 999984149999999999999987078888011898999973104999--713259999999999310168982257575
Q 000934 650 AFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDS--DLHMTALALELCCTLMADKRSSPNVGLAVR 727 (1219)
Q Consensus 650 ~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~--d~~~~~~al~~l~~l~~~~~~~p~~~~~~~ 727 (1219)
..+...+..+|..++.+++.++...+..+.+ .+..+++.+...+.++ |..++..++.+++.++.. .+..+..|.
T Consensus 646 ~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~---~~~~~~~~l 721 (861)
T 2bpt_A 646 KALNQVDSPVSITAVGFIADISNSLEEDFRR-YSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN---IGADFIPYL 721 (861)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHHHHTGGGGHH-HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH---HGGGGHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCHHCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_conf 8865566789999999999999874540311-199999999997278655676659999999999998---405089999
Q ss_pred HHHHHHHHHHH
Q ss_conf 51289999994
Q 000934 728 NKVLPQALALI 738 (1219)
Q Consensus 728 ~~~l~~l~~ll 738 (1219)
+.++|.+...+
T Consensus 722 ~~~l~~l~~~~ 732 (861)
T 2bpt_A 722 NDIMALCVAAQ 732 (861)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999997
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=342.59 Aligned_cols=577 Identities=11% Similarity=0.124 Sum_probs=359.0
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99999850-38641036889998998742059223999999999985089--9420418987999998205970246999
Q 000934 48 SNIVVQQL-DDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG--KDQHRDIASIALKTIIAEVTTSSLAQSI 124 (1219)
Q Consensus 48 ~~~ll~~l-~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~--~~~~r~~a~~aL~~~i~~~~~~~~~~~~ 124 (1219)
+..+|..+ .++++++|+.|.+-|..+... ..+.+...|+..+.+. +.+.|..++..||..+...-.
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~------- 74 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSND----NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDS------- 74 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSH-------
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCH-------
T ss_conf 999999742693979999999999999851----999999999999837899867999999998702257574-------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 9958698987420158874689789999999999830322-376999999994310389188999999999998961799
Q 000934 125 HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM-SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD 203 (1219)
Q Consensus 125 ~~~i~p~L~~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l-~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~ 203 (1219)
.+.. +....+...+ .+....+.+.++..+.++...+|..+..+++.++.....
T Consensus 75 --------------------~~~~------~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p 128 (861)
T 2bpt_A 75 --------------------VKTQ------QFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELP 128 (861)
T ss_dssp --------------------HHHH------HHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred --------------------HHHH------HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf --------------------8789------99976766299999999999999987799637999999999999984676
Q ss_pred -HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf -99999999999985118998478999999999999772331---10514546999998500068897689999999999
Q 000934 204 -DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR---FGPHLGDTVPVLIDYCTSASENDEELREYSLQALE 279 (1219)
Q Consensus 204 -~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~---~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~ 279 (1219)
..++.+++.+++.+.++. +...|..++.+++.+++..+.. +.++.+.+++.+.+.+.+. +.+.++|..+++++.
T Consensus 129 ~~~w~~ll~~L~~~l~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~vr~~al~~l~ 206 (861)
T 2bpt_A 129 HGAWPELMKIMVDNTGAEQ-PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQST-ETSKAVRLAALNALA 206 (861)
T ss_dssp GTCCHHHHHHHHHHTSTTS-CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTT-CCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH
T ss_conf 4554999999999872689-78999999999999997278435678988999999999841579-998789999999999
Q ss_pred HHHHHCCHHHCC--CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999739111101--089899999885156989899888776310133421000037888778652899999999999988
Q 000934 280 SFLLRCPRDISS--YCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALI 357 (1219)
Q Consensus 280 ~l~~~~~~~~~~--~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~e~~dd~~~~~~~dddD~swkVR~~A~~~l~~li 357 (1219)
.++......+.. ..+.+++.+.+.+. +..|++|+.+++++..++
T Consensus 207 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------------------------------~~~~~~r~~a~~~l~~l~ 252 (861)
T 2bpt_A 207 DSLIFIKNNMEREGERNYLMQVVCEATQ----------------------------------AEDIEVQAAAFGCLCKIM 252 (861)
T ss_dssp HHGGGCHHHHTSHHHHHHHHHHHHHHHT----------------------------------CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHC----------------------------------CCCHHHHHHHHHHHHHHH
T ss_conf 9999999870676689999999999865----------------------------------998899999999999999
Q ss_pred HCCCHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC-C--CCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 207301698898-88799985206541568989999999999970666766-6--6777887367998887899999999
Q 000934 358 VSRPEMLSKLYE-EACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKG-Q--IDNNELNPRWLLKQEVSKIVKSINR 433 (1219)
Q Consensus 358 ~~~~~~l~~~~~-~i~p~Li~~~~e~~e~Vr~~~~~~l~~li~~~~~~~~~-~--~~~~~~~p~~~L~~~lp~li~~l~~ 433 (1219)
...|+.+.+++. .+++.+...+.+.++.||..++..+..+++........ . ...+...+ ..+...++.+++.+..
T Consensus 253 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~il~~ll~ 331 (861)
T 2bpt_A 253 SKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSY-NFALSSIKDVVPNLLN 331 (861)
T ss_dssp HHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHH
T ss_conf 998899999889999999999873772789999999999999878864333210357732569-9999999889999999
Q ss_pred HHCC-------CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8310-------682203667999999999836413455365446769986037788621689999999998604999873
Q 000934 434 QLRE-------KSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVF 506 (1219)
Q Consensus 434 ~l~~-------~~~~~r~~~~~~lL~~l~~~~~~~l~~~~~~l~~~i~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~ 506 (1219)
.+.+ .++.+| ..+..++..++...+ ...++.+++.+...+.+.+ +..|..++.+++.++++..+..+
T Consensus 332 ~l~~~~~d~~d~~~~~r-~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~i~~~~~~~~~ 405 (861)
T 2bpt_A 332 LLTRQNEDPEDDDWNVS-MSAGACLQLFAQNCG---NHILEPVLEFVEQNITADN--WRNREAAVMAFGSIMDGPDKVQR 405 (861)
T ss_dssp HTTCCCCC-CCCCCHHH-HHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSS--HHHHHHHHHHHHHTSSSSCHHHH
T ss_pred HHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHCC---HHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 98706653012468689-999999999998740---8689999999998757997--26999999999999859987888
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 34255648999998528865789999999999988505786677889710089899999997530388987899999999
Q 000934 507 HPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCM 586 (1219)
Q Consensus 507 ~~~l~~l~p~i~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~Vr~~Ai~~l 586 (1219)
.+|++.++|.+...+.|+.+.++..++.+++.++..+++. ..-.+++..+++.++..+. +. ..||..|..++
T Consensus 406 ~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~~~~l~~l~~~l~--~~-~~v~~~a~~al 477 (861)
T 2bpt_A 406 TYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES-----IDPQQHLPGVVQACLIGLQ--DH-PKVATNCSWTI 477 (861)
T ss_dssp HHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG-----SCTTTTHHHHHHHHHHHHT--SC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHC--CC-HHHHHHHHHHH
T ss_conf 9989999999998828995999999999999999873540-----4878889999999999764--47-28999999999
Q ss_pred HHHHHHHC----CCCCCHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH---
Q ss_conf 99999403----44353144379999985238----84178799999998618898854589999999999999984---
Q 000934 587 GLVISTFG----DNLGAELPACLPVLVDRMGN----EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKA--- 655 (1219)
Q Consensus 587 g~l~~~~g----~~l~~~l~~~l~~L~~~L~~----e~~r~~ai~al~~ia~s~~~~~l~~~~~~~l~~L~~~L~~~--- 655 (1219)
+.++..++ ..+.++++.+++.+...++. +.+|..++++++.++... +..+.+++..+++.+...+.+.
T Consensus 478 ~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~ 556 (861)
T 2bpt_A 478 INLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA-TDTVAETSASISTFVMDKLGQTMSV 556 (861)
T ss_dssp HHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC-CGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999986231354246899999999999998575861589999999999999976-2656999999999999999988753
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHH
Q ss_conf ------------14999999999999998707888801189899997310499971-325999999999931
Q 000934 656 ------------NRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDL-HMTALALELCCTLMA 714 (1219)
Q Consensus 656 ------------~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~-~~~~~al~~l~~l~~ 714 (1219)
...+|..++.+|..++...+..+.+ ..+.+++.+...++..+. .++..++.+++.++.
T Consensus 557 ~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~ 627 (861)
T 2bpt_A 557 DENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP-VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAA 627 (861)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 2013885567779999999999999999985563478-9999999999997467887579999999999999
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=329.34 Aligned_cols=782 Identities=13% Similarity=0.147 Sum_probs=420.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHCCC---------
Q ss_conf 999985038641036889998998742059223999999999985089--942041898799999820597---------
Q 000934 49 NIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG--KDQHRDIASIALKTIIAEVTT--------- 117 (1219)
Q Consensus 49 ~~ll~~l~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~--~~~~r~~a~~aL~~~i~~~~~--------- 117 (1219)
..+|..+.++++++|+.|..-+..+.. .+.+.+...|+..+.+. +...|..++..||..+.....
T Consensus 4 ~~~L~~~~s~d~~~r~~A~~~L~~~~~----~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 4 ITILEKTVSPDRLELEAAQKFLERAAV----ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999997629898999999999999871----6804699999999857899879999999999876055434767899864
Q ss_pred -HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHH
Q ss_conf -02469999958698987420158874689789999999999830322376999999994310389--188999999999
Q 000934 118 -SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSAN--QASVRKKSVSCI 194 (1219)
Q Consensus 118 -~~~~~~~~~~i~p~L~~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~--~~~vrk~a~~~l 194 (1219)
..+.......+.+.+++++.+. ++.+ ..++.+++.+....+. ..+++.+++.++..+.++ +..+|+.++.++
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~--~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l 154 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTE--TYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAI 154 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTC--CSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHCCC--CHHH-HHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 40699999999999999986799--4788-9999999999984676--22568899999998708898799999999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99896179999999999999985118998478999999999999772331105145469999985000688976899999
Q 000934 195 ASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYS 274 (1219)
Q Consensus 195 ~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~a 274 (1219)
+.++...+ +..|.++++.+++.+.+.+.+. +.+.++|..+
T Consensus 155 ~~l~~~~~---------------------------------------~~~~~~~~~~ll~~l~~~l~~~-~~~~~vr~~a 194 (876)
T 1qgr_A 155 GYICQDID---------------------------------------PEQLQDKSNEILTAIIQGMRKE-EPSNNVKLAA 194 (876)
T ss_dssp HHHHHHSC---------------------------------------HHHHGGGHHHHHHHHHHHHSTT-CSCHHHHHHH
T ss_pred HHHHHHCC---------------------------------------HHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHH
T ss_conf 99987458---------------------------------------7667867999999999861679-9988999999
Q ss_pred HHHHHHHHHHCCHHHCCCH--HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999999973911110108--98999998851569898998887763101334210000378887786528999999999
Q 000934 275 LQALESFLLRCPRDISSYC--DEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKC 352 (1219)
Q Consensus 275 l~~l~~l~~~~~~~~~~~l--~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~e~~dd~~~~~~~dddD~swkVR~~A~~~ 352 (1219)
++++..++...+..+.... +.+++.+...+. |..+++|+.++++
T Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~----------------------------------~~~~~vr~~a~~~ 240 (876)
T 1qgr_A 195 TNALLNSLEFTKANFDKESERHFIMQVVCEATQ----------------------------------CPDTRVRVAALQN 240 (876)
T ss_dssp HHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT----------------------------------CSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------------------------CCCHHHHHHHHHH
T ss_conf 999999999999988717899999999998717----------------------------------9988999999999
Q ss_pred HHHHHHCCCHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCHHHHHHHHH
Q ss_conf 99988207301698898-88799985206541568989999999999970666-------76666777887367998887
Q 000934 353 LAALIVSRPEMLSKLYE-EACPKLIDRFKEREENVKMDVFNTFIELVRQTGNV-------TKGQIDNNELNPRWLLKQEV 424 (1219)
Q Consensus 353 l~~li~~~~~~l~~~~~-~i~p~Li~~~~e~~e~Vr~~~~~~l~~li~~~~~~-------~~~~~~~~~~~p~~~L~~~l 424 (1219)
+..++..++..+.+++. .+++.+...+++.++.||..++..+..+.+..... ......+ ..........++
T Consensus 241 l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 319 (876)
T 1qgr_A 241 LVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP-EHTSKFYAKGAL 319 (876)
T ss_dssp HHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC-SSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHHHHH
T ss_conf 9999998699999887789999999996387349999999999999887876766510011247775-420189999989
Q ss_pred HHHHHHHHHHHC-------CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 899999999831-------0682203667999999999836413455365446769986037788621689999999998
Q 000934 425 SKIVKSINRQLR-------EKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLV 497 (1219)
Q Consensus 425 p~li~~l~~~l~-------~~~~~~r~~~~~~lL~~l~~~~~~~l~~~~~~l~~~i~~~l~d~~~~~~~~~~al~~l~~l 497 (1219)
+.+++.+.+.+. +.++.+| .++..++..++...+. ..++.+++.+...+.+.+ +.+|..++.+++.+
T Consensus 320 ~~ll~~ll~~l~~~~~d~~~~~~~~r-~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~--~~~r~~a~~~l~~i 393 (876)
T 1qgr_A 320 QYLVPILTQTLTKQDENDDDDDWNPC-KAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPD--WRYRDAAVMAFGCI 393 (876)
T ss_dssp HHHHHHHHHHTTCCCSSCCTTCCCHH-HHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSS--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCH---HHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHH
T ss_conf 88707999875313344454521799-9999999999987758---669999999998846998--28999999999999
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 60499987334255648999998528865789999999999988505786677889710089899999997530388987
Q 000934 498 LSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQE 577 (1219)
Q Consensus 498 ~~~~~~~~~~~~l~~l~p~i~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~ 577 (1219)
..+..+..+.+|++.++|.++..++|+.+.++..|+.+++.++..+.+. ....+++..+++.++..+. + +..
T Consensus 394 ~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-----~~~~~~l~~~l~~l~~~l~--~-~~~ 465 (876)
T 1qgr_A 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA-----AINDVYLAPLLQCLIEGLS--A-EPR 465 (876)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG-----TSSTTTHHHHHHHHHHHTT--S-CHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHH-----CCCHHHHHHHHHHHHHHHC--C-CHH
T ss_conf 7488777899999999999999867997899999999999999857201-----1447779999999999875--8-888
Q ss_pred HHHHHHHHHHHHHHHHC--------------CCCCCHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 89999999999999403--------------44353144379999985238-----841787999999986188988545
Q 000934 578 VKECAISCMGLVISTFG--------------DNLGAELPACLPVLVDRMGN-----EITRLTAVKAFAVIAASPLHIDLT 638 (1219)
Q Consensus 578 Vr~~Ai~~lg~l~~~~g--------------~~l~~~l~~~l~~L~~~L~~-----e~~r~~ai~al~~ia~s~~~~~l~ 638 (1219)
||.+|..+++.++...+ +.+.++++.+++.|...+.. ...|..++.+++.++... +.+..
T Consensus 466 v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~-~~~~~ 544 (876)
T 1qgr_A 466 VASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS-AKDCY 544 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC-CSTTH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CHHHH
T ss_conf 99999999999999850201234444555403215769999999999972767420469999999999999977-43118
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHHH
Q ss_conf 899999999999999841499999999999999870788880118989999731049997----1325999999999931
Q 000934 639 CVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSD----LHMTALALELCCTLMA 714 (1219)
Q Consensus 639 ~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d----~~~~~~al~~l~~l~~ 714 (1219)
+++..+++.+...+... ... .. ...++.| ..++..++.+++.++.
T Consensus 545 ~~~~~l~~~l~~~l~~~---------------~~~-~~---------------~~~~~~d~~~~~~~~~~~~~~l~~l~~ 593 (876)
T 1qgr_A 545 PAVQKTTLVIMERLQQV---------------LQM-ES---------------HIQSTSDRIQFNDLQSLLCATLQNVLR 593 (876)
T ss_dssp HHHHHHHHHHHHHHHHH---------------HTT-TT---------------SCCSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH---------------HHH-HH---------------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999---------------988-71---------------248863599999999999999999999
Q ss_pred CCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 016898-2257575512899999942101101337999999999985149885899999850479999984114444443
Q 000934 715 DKRSSP-NVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYS 793 (1219)
Q Consensus 715 ~~~~~p-~~~~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~~~l~~~~~~~~~~l~~~ll~~~~~~~~~~~l~~~a~~~ 793 (1219)
. .+ .....+.+.++|.++..+++..-..........++..++...+..+.
T Consensus 594 ~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~-------------------------- 644 (876)
T 1qgr_A 594 K---VQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFL-------------------------- 644 (876)
T ss_dssp T---SCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGG--------------------------
T ss_pred H---HCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH--------------------------
T ss_conf 8---28542057899999999999985368888508999999999999876099--------------------------
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC---CCCHHHHHHHHCCC--CCHH
Q ss_conf 446766452115863034479999998410799856889999999976312689998---51049999973289--9545
Q 000934 794 IAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSS---HEHIENVIIESFQS--PFEE 868 (1219)
Q Consensus 794 ~a~~i~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~laL~~Lgeig~~~~~~~---~~~l~~~l~~~~~~--~~e~ 868 (1219)
.....+++.+...+.. ..++..+..++.++|.+.+..+... .+.+.+.+++.+.+ .+++
T Consensus 645 --------------~~~~~~~~~l~~~l~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 708 (876)
T 1qgr_A 645 --------------KYMEAFKPFLGIGLKN--YAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRS 708 (876)
T ss_dssp --------------GGHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGG
T ss_pred --------------HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf --------------9999999999998758--650879999999999999988785464599999999997487123387
Q ss_pred HHHHHHHHHHHHHH---CCCCCCHHHHHHHHCC----CC------------CHHHHHHHHHHHHHHHCCCC------CHH
Q ss_conf 76789999886541---1953626989997300----22------------20589999999999632444------201
Q 000934 869 IKSAASYALGNIAV---GNLSKFLPFILDQIDN----QQ------------KKQYLLLHSLKEVIVRQSVD------KAE 923 (1219)
Q Consensus 869 vR~aAa~aLG~l~~---~~~~~~lp~il~~i~~----~~------------~~~~~~l~alkeii~~~~~~------~~~ 923 (1219)
+|..+..++|.++. .+...|+|.++..+.. .. ..|...+.++..++...+.. ...
T Consensus 709 ~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~ 788 (876)
T 1qgr_A 709 VKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVM 788 (876)
T ss_dssp GHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGG
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 63999999999999703527999999999999998555899975889999999999999999999997457555554388
Q ss_pred HHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHCCCCC-CCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 00489999999999420699--610576999999551024866-406999998158870023787755676422598113
Q 000934 924 FQDSSVEKILNLLFNHCESE--EEGVRNVVAECLGKIALIEPA-KLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKI 1000 (1219)
Q Consensus 924 ~~~~~~~~i~~~L~~~~~~~--ee~vr~~~ae~LG~l~~~~p~-~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~ 1000 (1219)
.+.||++.+++.+...+.++ ++++|+.++.|||.++...+. .+.
T Consensus 789 ~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~--------------------------------- 835 (876)
T 1qgr_A 789 LVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLK--------------------------------- 835 (876)
T ss_dssp GSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHH---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH---------------------------------
T ss_conf 99999999999999986588888899999999999999882848899---------------------------------
Q ss_pred HHH-HHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHCCCH
Q ss_conf 451-4674999996-40489857999999999988730841
Q 000934 1001 DEI-IFPEISSFLM-LIKDQDRHVRRAAVLALSTFAHNKPN 1039 (1219)
Q Consensus 1001 ~~~-L~~~i~~~l~-~l~d~~~~VR~~a~~~L~~~~~~~p~ 1039 (1219)
++ ....++.++. ++.|++.++|+.|..+++.+++.++.
T Consensus 836 -~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~~ 875 (876)
T 1qgr_A 836 -LVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKNQ 875 (876)
T ss_dssp -HHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred -HHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf -9970489999999875468876899999999999975347
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=319.26 Aligned_cols=759 Identities=13% Similarity=0.153 Sum_probs=410.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 87688999999999850386410368899989987420592239999999999850899420418987999998205970
Q 000934 39 ADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS 118 (1219)
Q Consensus 39 ~~~~~~~~v~~~ll~~l~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~ 118 (1219)
.++.....+...|- ...++++++|++|.+-+..+-. .+....++-.+.....+.+...|..++..||..+...-.
T Consensus 7 ~~~~~~~~l~~~l~-~~~s~d~~~r~~Ae~~L~~~~~---~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~- 81 (852)
T 4fdd_A 7 PDEQGLQQILQLLK-ESQSPDTTIQRTVQQKLEQLNQ---YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ- 81 (852)
T ss_dssp CCHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG-
T ss_pred CCHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC-
T ss_conf 98423999999999-8739498999999999999870---998899999998566889867999999999998987447-
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 24699999586989874201588746897899999999998303223769999999943103891889999999999989
Q 000934 119 SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLA 198 (1219)
Q Consensus 119 ~~~~~~~~~i~p~L~~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~ 198 (1219)
.+....-..|-+.+++++.++ ++.+|..+..+++.+....+. ..++.+++.+...+.++++.+|+.++.+++.++
T Consensus 82 ~~~~~~~~~ik~~ll~~l~~~--~~~vr~~~a~~i~~ia~~~~~---~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 82 NFPNGVTDFIKSECLNNIGDS--SPLIRATVGILITTIASKGEL---QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKIC 156 (852)
T ss_dssp GCCHHHHHHHHHHHHTTTTCS--SHHHHHHHHHHHHHHHHHTTT---TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 799999999999999987499--899999999999999986481---356899999999870999899999999999999
Q ss_pred HHCCHHH--------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 6179999--------99999999998511899847899999999999977233110514546999998500068897689
Q 000934 199 SSLSDDL--------LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEEL 270 (1219)
Q Consensus 199 ~~~~~~~--------~~~l~~~l~~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~el 270 (1219)
...+... +..+++.+++.+.+++ ..+|..++.+++.++...+..+.++++.+++.+++.++ ++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~--~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~---d~~~~v 231 (852)
T 4fdd_A 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSS--PKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG---DEEPEV 231 (852)
T ss_dssp HHHTTHHHHCSSSSCHHHHHHHHTTTTTCSS--HHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT---CCCHHH
T ss_pred HHHHHHHCHHHHCCHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC---CCCHHH
T ss_conf 9857875634313329999999999856797--89999999999999864638799889999999998717---997789
Q ss_pred HHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999999973911110108989999988515698989988877631013342100003788877865289999999
Q 000934 271 REYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAA 350 (1219)
Q Consensus 271 re~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~e~~dd~~~~~~~dddD~swkVR~~A~ 350 (1219)
|..+++++..++...|+.+.+|++.+++.+++.++. + ...||..|+
T Consensus 232 r~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~-~---------------------------------~~~vr~~a~ 277 (852)
T 4fdd_A 232 RKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD-Q---------------------------------DENVALEAC 277 (852)
T ss_dssp HHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC-S---------------------------------SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-C---------------------------------CHHHHHHHH
T ss_conf 999999999999857798998899999999987069-9---------------------------------689999999
Q ss_pred HHHHHHHHCC--CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999988207--30169889888799985206541568989999999999970666766667778873679988878999
Q 000934 351 KCLAALIVSR--PEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIV 428 (1219)
Q Consensus 351 ~~l~~li~~~--~~~l~~~~~~i~p~Li~~~~e~~e~Vr~~~~~~l~~li~~~~~~~~~~~~~~~~~p~~~L~~~lp~li 428 (1219)
..+..+.... .+.+.+++..++|.++..+...++... +.+.. +... +.-
T Consensus 278 e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~---------~~~~d--------------~~ed--~~~---- 328 (852)
T 4fdd_A 278 EFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDII---------LLKGD--------------VEGG--SGG---- 328 (852)
T ss_dssp HHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHH---------HHHC----------------------------
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH---------HHCCC--------------CCCC--CCC----
T ss_conf 999998603657988788898899999987578676799---------86698--------------4432--224----
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 99999831068220366799999999983641345536544676998603778862168999999999860499987334
Q 000934 429 KSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHP 508 (1219)
Q Consensus 429 ~~l~~~l~~~~~~~r~~~~~~lL~~l~~~~~~~l~~~~~~l~~~i~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~ 508 (1219)
.-...++.+| .++...++.++...+. ..++.++|.+...+.+.+ +.+|.+++..++.+.++.+ ..+.+
T Consensus 329 -----dd~~~~~~vr-~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~~~~--~~~R~aa~~alg~i~~~~~-~~~~~ 396 (852)
T 4fdd_A 329 -----DDTISDWNLR-KCSAAALDVLANVYRD---ELLPHILPLLKELLFHHE--WVVKESGILVLGAIAEGCM-QGMIP 396 (852)
T ss_dssp ---------CCCCHH-HHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHTTTTTH-HHHGG
T ss_pred -----CCCCCCCHHH-HHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHCCH-HHHHH
T ss_conf -----5640111699-9999999999874618---789999999999855998--8999999999999986356-88998
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 25564899999852886578999999999998850578667788971008989999999753038898789999999999
Q 000934 509 YIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGL 588 (1219)
Q Consensus 509 ~l~~l~p~i~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~Vr~~Ai~~lg~ 588 (1219)
|++.++|.+...++|+.+.|+..+..+++.+...+.+. ...+|+..+++.++..+. |.+..||..|..+++.
T Consensus 397 ~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~------~~~~~~~~ll~~L~~~L~--d~~~~vr~~a~~aL~~ 468 (852)
T 4fdd_A 397 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ------PPDTYLKPLMTELLKRIL--DSNKRVQEAACSAFAT 468 (852)
T ss_dssp GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS------CTTTTHHHHHHHHHHHHT--CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
T ss_conf 79999999998717998899999999999999886110------478999999999999985--8988899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99940344353144379999985238841787999999986188988545899999999999999841499999999999
Q 000934 589 VISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMN 668 (1219)
Q Consensus 589 l~~~~g~~l~~~l~~~l~~L~~~L~~e~~r~~ai~al~~ia~s~~~~~l~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~ 668 (1219)
++...+..+.++++.+++.|...++... .......+.+++
T Consensus 469 l~~~~~~~l~~~l~~ll~~L~~~l~~~~----------------------------------------~~~~~~~~~ai~ 508 (852)
T 4fdd_A 469 LEEEACTELVPYLAYILDTLVFAFSKYQ----------------------------------------HKNLLILYDAIG 508 (852)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHCC----------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------HHHHHHHHHHHH
T ss_conf 9997367667679999999999998837----------------------------------------479999999999
Q ss_pred HHHHHHCCCCC-CCHHHHHHHHHH---HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99987078888-011898999973---10499971325999999999931016898225757551289999994210110
Q 000934 669 SLVVAYGDKIG-ASAYEVIIVELS---TLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQ 744 (1219)
Q Consensus 669 ~l~~~~~~~l~-~~~~~~il~~l~---~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~ 744 (1219)
.++...+..+. +..++.+++.+. ..+.+++...+ .++++++.++... ......+.+.+++.++..++..+ .
T Consensus 509 ~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~---g~~~~~~~~~i~~~~~~~l~~~l-~ 583 (852)
T 4fdd_A 509 TLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATAL---QSGFLPYCEPVYQRCVNLVQKTL-A 583 (852)
T ss_dssp HHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHH---GGGGHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-H
T ss_conf 99997424313678999988999999873330469999-9999999999997---48679889999999999999999-9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 13379999999999851498858999998504799999841144444434467664521158630344799999984107
Q 000934 745 GQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDD 824 (1219)
Q Consensus 745 ~~~l~al~~~~~~l~~~~~~~~~~l~~~ll~~~~~~~~~~~l~~~a~~~~a~~i~~i~~~~~~~~~~~~l~~~~~~l~~~ 824 (1219)
.. ..... ++.... .++ +.
T Consensus 584 ~~----------~~~~~-------------~~~~~~-~~d---~~----------------------------------- 601 (852)
T 4fdd_A 584 QA----------MLNNA-------------QPDQYE-APD---KD----------------------------------- 601 (852)
T ss_dssp HH----------HHHHH-------------CTTTSC-CCC---TH-----------------------------------
T ss_pred HH----------HHHHC-------------CCCCCC-CCC---CH-----------------------------------
T ss_conf 99----------87533-------------886668-876---11-----------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCC-----CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
Q ss_conf 99856889999999976312689998-----5104999997328995457678999988654119536269899973002
Q 000934 825 SSTNSAKQHLALLCLGEIGRRKDLSS-----HEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQ 899 (1219)
Q Consensus 825 ~~~~~~~~~laL~~Lgeig~~~~~~~-----~~~l~~~l~~~~~~~~e~vR~aAa~aLG~l~~~~~~~~lp~il~~i~~~ 899 (1219)
.+.-++..+|.+.+..+... .+.+.+.++..+.+++.+||..|..++|.++....
T Consensus 602 ------~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-------------- 661 (852)
T 4fdd_A 602 ------FMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF-------------- 661 (852)
T ss_dssp ------HHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG--------------
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH--------------
T ss_conf ------999999999789998747699883677189999998389984499999999999999816--------------
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
Q ss_conf 22058999999999963244420100489999999999420699610576999999551024866406999998158870
Q 000934 900 QKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAA 979 (1219)
Q Consensus 900 ~~~~~~~l~alkeii~~~~~~~~~~~~~~~~~i~~~L~~~~~~~ee~vr~~~ae~LG~l~~~~p~~~lp~l~~~l~~~~~ 979 (1219)
..+.+|+..+.+.+.+.++.++.++|+.++.++|.++...+.
T Consensus 662 -----------------------~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~--------------- 703 (852)
T 4fdd_A 662 -----------------------QHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI--------------- 703 (852)
T ss_dssp -----------------------GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG---------------
T ss_pred -----------------------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH---------------
T ss_conf -----------------------888987999999999876942068999999999999997117---------------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHH
Q ss_conf 0237877556764225981134514674999996404898--57999999999988730841111024456687887631
Q 000934 980 FTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQD--RHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTI 1057 (1219)
Q Consensus 980 ~~R~~~i~~lk~~i~~~~~~~~~~L~~~i~~~l~~l~d~~--~~VR~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~ 1057 (1219)
.+.+++..+++.++..+++++ ..++..+..+++.++...|..+.|+++++++.+...+.
T Consensus 704 -------------------~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~ 764 (852)
T 4fdd_A 704 -------------------EMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLR 764 (852)
T ss_dssp -------------------GGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHC
T ss_conf -------------------6787899999999998579988720778899999999986889767558999999999865
Q ss_pred CCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 122100245216830240568457998999999999620
Q 000934 1058 VKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSC 1096 (1219)
Q Consensus 1058 ~~~elir~v~mgpfkh~~Ddgle~Rk~a~e~l~~ll~~~ 1096 (1219)
. ++| .+.|..||.++..++...
T Consensus 765 ~----------------~~d-~~e~~~a~~~l~~li~~~ 786 (852)
T 4fdd_A 765 N----------------IRD-NEEKDSAFRGICTMISVN 786 (852)
T ss_dssp T----------------SCS-SHHHHHHHHHHHHHHHHC
T ss_pred C----------------CCC-CHHHHHHHHHHHHHHHHC
T ss_conf 3----------------666-079999999999999869
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=290.97 Aligned_cols=573 Identities=14% Similarity=0.167 Sum_probs=395.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCH-HHH
Q ss_conf 8899999881499920256539999997510357787688999999999850386410368899989987420592-239
Q 000934 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE-PRV 82 (1219)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~l~D~~~~Vq~~A~~~l~~l~~~~~~-~~~ 82 (1219)
+.+..+++.+.++|+++|.+|...|.+.... . .+......+++.+.... |++.+||..+.++++.+...++. ..+
T Consensus 10 ~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~--~-~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~ 85 (588)
T 1b3u_A 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALA--L-GVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYV 85 (588)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHTHHHHHHH--S-CHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGG
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--H-CHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 7499999985062199999999719999998--6-97989998998898755-785899999999997787605859899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985089942041898799999820597024699999586989874201588746897899999999998303
Q 000934 83 VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1219)
Q Consensus 83 ~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~i~p~L~~~l~~~~~~~~v~~~~~~~L~~l~~~~g~ 162 (1219)
..+++.|.....+++..+|..+..+|+.++...+ .
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~---------------------------------------------~ 120 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHS---------------------------------------------P 120 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC---------------------------------------------H
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC---------------------------------------------H
T ss_conf 9989999998747607999999999999999799---------------------------------------------9
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 22376999999994310389188999999999998961799999999999999851189984789999999999997723
Q 000934 163 LMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG 242 (1219)
Q Consensus 163 ~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~l~~l~~~~~ 242 (1219)
. ...+.+++.+.....++.+.+|..|+.+++.++...++.....+++.+...+.+++ +.+|+.++++++.+++..|
T Consensus 121 ~--~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~--~~VR~~a~~~l~~l~~~~~ 196 (588)
T 1b3u_A 121 S--DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT--PMVRRAAASKLGEFAKVLE 196 (588)
T ss_dssp H--HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSC--HHHHHHHHHHHHHHHHTSC
T ss_pred H--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHC
T ss_conf 9--99999999999985077717999999999999985699999999999999848997--8899999998999999816
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 31105145469999985000688976899999999999997391111010898999998851569898998887763101
Q 000934 243 YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEA 322 (1219)
Q Consensus 243 ~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~ 322 (1219)
.. .+.+.++|.+...++ ++++.+|..++.++..+...++.+ .+.+.+++.+.+++.
T Consensus 197 ~~--~~~~~l~~~l~~~~~---d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~----------------- 252 (588)
T 1b3u_A 197 LD--NVKSEIIPMFSNLAS---DEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAE----------------- 252 (588)
T ss_dssp HH--HHHHTHHHHHHHHHT---CSCHHHHTTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHT-----------------
T ss_pred HH--HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHCC-----------------
T ss_conf 77--679999999998824---992889998999999999857988--888789999999806-----------------
Q ss_pred CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 33421000037888778652899999999999988207301698898887999852065415689899999999999706
Q 000934 323 YEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTG 402 (1219)
Q Consensus 323 ~~e~~dd~~~~~~~dddD~swkVR~~A~~~l~~li~~~~~~l~~~~~~i~p~Li~~~~e~~e~Vr~~~~~~l~~li~~~~ 402 (1219)
|.+|+||++|+.+++.+....+.. .+...++|.++..++|.++.||..+..+++.+....+
T Consensus 253 -----------------d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 253 -----------------DKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp -----------------CSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred -----------------CCCHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf -----------------997789999999999999981952--1055899999998589958999999987999999727
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 66766667778873679988878999999998310682203667999999999836413455365446769986037788
Q 000934 403 NVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSS 482 (1219)
Q Consensus 403 ~~~~~~~~~~~~~p~~~L~~~lp~li~~l~~~l~~~~~~~r~~~~~~lL~~l~~~~~~~l~~~~~~l~~~i~~~l~d~~~ 482 (1219)
. ......+++.+++.+...+.++++.+| ..+...++.++...+.. ...+.++|.+...++|.+
T Consensus 314 ~-------------~~~~~~~~~~l~p~l~~~l~d~~~~vR-~~a~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~- 376 (588)
T 1b3u_A 314 A-------------DCRENVIMSQILPCIKELVSDANQHVK-SALASVIMGLSPILGKD--NTIEHLLPLFLAQLKDEC- 376 (588)
T ss_dssp T-------------TTHHHHHHHTHHHHHHHHHTCSCHHHH-HHHHTTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSC-
T ss_pred H-------------HHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCC-
T ss_conf 4-------------443657999999999998619988999-99999999998886276--788889999999837983-
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf 62168999999999860499987334255648999998528865789999999999988505786677889710089899
Q 000934 483 TSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIY 562 (1219)
Q Consensus 483 ~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~i~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 562 (1219)
..+|..++..++.+....+. ..+.+.++|.+...+.|+.++++..++.+++.+...+++. .+.+.++
T Consensus 377 -~~Vr~~a~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---------~~~~~l~ 443 (588)
T 1b3u_A 377 -PEVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---------FFDEKLN 443 (588)
T ss_dssp -HHHHHHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---------GCCHHHH
T ss_pred -HHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHH---------HHHHHHH
T ss_conf -68999999989999975498---9898888999999835998139999999999999880989---------8999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 99999753038898789999999999999403443531443799999852388--4178799999998618898854589
Q 000934 563 NAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE--ITRLTAVKAFAVIAASPLHIDLTCV 640 (1219)
Q Consensus 563 ~~ll~~l~~~d~d~~Vr~~Ai~~lg~l~~~~g~~l~~~l~~~l~~L~~~L~~e--~~r~~ai~al~~ia~s~~~~~l~~~ 640 (1219)
+.++..+. |.+.+||+.|+.++|.++...|... +.+.++|.+...++++ .+|..++.+++.++..- ....+
T Consensus 444 ~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~---~~~~~ 516 (588)
T 1b3u_A 444 SLCMAWLV--DHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC---GQDIT 516 (588)
T ss_dssp HHHHHGGG--CSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHC--CCCHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC---CHHHH
T ss_conf 99998825--9819999999999999999968445--78889999999831898799999999999999766---98999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999999999841499999999999999870788880118-989999731049997132599999999993
Q 000934 641 LEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAY-EVIIVELSTLISDSDLHMTALALELCCTLM 713 (1219)
Q Consensus 641 ~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~-~~il~~l~~~l~~~d~~~~~~al~~l~~l~ 713 (1219)
.+.+++.+...++.+++.+|..++.+++.+....+. ... +.+++.+..+..++|..++..+..+++.+.
T Consensus 517 ~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~----~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN----STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH----HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999998667899862799999999999998653----6459999999998747996669999999999763
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=285.47 Aligned_cols=459 Identities=17% Similarity=0.153 Sum_probs=262.3
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 99586989874201588746897899999999998303223769999999943103891889999999999989617999
Q 000934 125 HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD 204 (1219)
Q Consensus 125 ~~~i~p~L~~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~ 204 (1219)
+..++|.|...+ ++ ++++|..+...|+.+....|.. .+...+++.+...+.+++..+|+.|+.+++.++...++.
T Consensus 47 ~~~l~~~L~~~~-d~--~~~vr~~~~~~L~~~~~~~~~~--~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~ 121 (588)
T 1b3u_A 47 RSELLPFLTDTI-YD--EDEVLLALAEQLGTFTTLVGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121 (588)
T ss_dssp HHTHHHHHHHTC-CC--CHHHHHHHHHHHTTCSGGGTSG--GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHC-CC--CHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 998998898755-78--5899999999997787605859--899998999999874760799999999999999979999
Q ss_pred HHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999-9999999985118998478999999999999772331105145469999985000688976899999999999997
Q 000934 205 LLA-KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1219)
Q Consensus 205 ~~~-~l~~~l~~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~ 283 (1219)
.+. .+++.+..... .++ ...|..++.+++.++...+.. +.+.++|.+...++ ++++++|..+.++++.++.
T Consensus 122 ~~~~~l~~~l~~l~~-~~~-~~~R~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~---d~~~~VR~~a~~~l~~l~~ 193 (588)
T 1b3u_A 122 DLEAHFVPLVKRLAG-GDW-FTSRTSACGLFSVCYPRVSSA---VKAELRQYFRNLCS---DDTPMVRRAAASKLGEFAK 193 (588)
T ss_dssp HHHHTHHHHHHHHHT-CSS-HHHHHHHGGGHHHHTTTSCHH---HHHHHHHHHHHHHT---CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCC-CHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHH
T ss_conf 999999999999850-777-179999999999999856999---99999999999848---9978899999998999999
Q ss_pred HCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 39111101089899999885156989899888776310133421000037888778652899999999999988207301
Q 000934 284 RCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEM 363 (1219)
Q Consensus 284 ~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~e~~dd~~~~~~~dddD~swkVR~~A~~~l~~li~~~~~~ 363 (1219)
.++.+ .+.+.+++.+...+. |.+|.||+.|+.+++.+....+.
T Consensus 194 ~~~~~--~~~~~l~~~l~~~~~----------------------------------d~~~~vr~~a~~~l~~l~~~~~~- 236 (588)
T 1b3u_A 194 VLELD--NVKSEIIPMFSNLAS----------------------------------DEQDSVRLLAVEACVNIAQLLPQ- 236 (588)
T ss_dssp TSCHH--HHHHTHHHHHHHHHT----------------------------------CSCHHHHTTHHHHHHHHHHHSCH-
T ss_pred HHCHH--HHHHHHHHHHHHHHC----------------------------------CCCHHHHHHHHHHHHHHHHHCCH-
T ss_conf 81677--679999999998824----------------------------------99288999899999999985798-
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 69889888799985206541568989999999999970666766667778873679988878999999998310682203
Q 000934 364 LSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTK 443 (1219)
Q Consensus 364 l~~~~~~i~p~Li~~~~e~~e~Vr~~~~~~l~~li~~~~~~~~~~~~~~~~~p~~~L~~~lp~li~~l~~~l~~~~~~~r 443 (1219)
....+.++|.+...++|.++.||..++.+++.+....+ + ..+.+.+++.+.+.+++.++.+|
T Consensus 237 -~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~-------------~----~~~~~~l~~~l~~~l~d~~~~vr 298 (588)
T 1b3u_A 237 -EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG-------------P----EITKTDLVPAFQNLMKDCEAEVR 298 (588)
T ss_dssp -HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC-------------H----HHHHHTHHHHHHHHHTCSSHHHH
T ss_pred -HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-------------C----CCCHHHHHHHHHHHHCCCCHHHH
T ss_conf -88887899999998069977899999999999999819-------------5----21055899999998589958999
Q ss_pred HHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 66799999999983641345--5365446769986037788621689999999998604999873342556489999985
Q 000934 444 QVGAFSVLRELVVVLPDCLA--DHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAV 521 (1219)
Q Consensus 444 ~~~~~~lL~~l~~~~~~~l~--~~~~~l~~~i~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~i~~~l 521 (1219)
..+...++.++...+.... .+.+.++|.+...++|.+ +.+|..++..++.+....+. ....+.++|.+...+
T Consensus 299 -~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~--~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l 372 (588)
T 1b3u_A 299 -AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN--QHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQL 372 (588)
T ss_dssp -HHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC--HHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf -999987999999727444365799999999999861998--89999999999999888627---678888999999983
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 28865789999999999988505786677889710089899999997530388987899999999999994034435314
Q 000934 522 GERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAEL 601 (1219)
Q Consensus 522 ~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~d~~Vr~~Ai~~lg~l~~~~g~~l~~~l 601 (1219)
+|....++..++..++.+...+++ ..+.+.+++.+...+. |.+..+|..++.+++.+....|..+ +.
T Consensus 373 ~d~~~~Vr~~a~~~l~~l~~~~~~---------~~~~~~~lp~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~--~~ 439 (588)
T 1b3u_A 373 KDECPEVRLNIISNLDCVNEVIGI---------RQLSQSLLPAIVELAE--DAKWRVRLAIIEYMPLLAGQLGVEF--FD 439 (588)
T ss_dssp TCSCHHHHHHHHTTCHHHHHHSCH---------HHHHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHHCGGG--CC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCH---------HHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHCCHHH--HH
T ss_conf 798368999999989999975498---------9898888999999835--9981399999999999998809898--99
Q ss_pred HHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43799999852388--4178799999998618898854589999999999999984149999999999999987
Q 000934 602 PACLPVLVDRMGNE--ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVA 673 (1219)
Q Consensus 602 ~~~l~~L~~~L~~e--~~r~~ai~al~~ia~s~~~~~l~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~ 673 (1219)
+.++|.+...+++. .+|..|+.+++.++..... ..+.+.+++.|...+..++..+|..++.+++.++..
T Consensus 440 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~ 510 (588)
T 1b3u_A 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV 510 (588)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999882598199999999999999999684---457888999999983189879999999999999976
Done!