Query 000935
Match_columns 1219
No_of_seqs 27 out of 29
Neff 1.7
Searched_HMMs 13730
Date Tue Mar 26 16:23:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000935.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_704-707//hhsearch_scop/000935hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fc6a1 g.66.1.1 (A:8-44) Targ 12.2 14 0.001 12.2 -1.0 15 92-106 13-27 (37)
2 d1r9fa_ d.255.1.1 (A:) Tombusv 9.0 18 0.0013 11.3 -1.4 22 456-477 3-25 (124)
3 d2g9da1 c.56.5.7 (A:3-342) Suc 3.6 1E+02 0.0076 5.8 0.3 88 238-330 1-99 (340)
4 d1yfqa_ b.69.4.2 (A:) Cell cyc 3.2 1.2E+02 0.0089 5.2 4.2 37 150-188 6-42 (342)
5 d2akla2 g.41.3.5 (A:3-40) Hypo 3.0 1.3E+02 0.0094 5.1 -0.1 14 199-212 22-35 (38)
6 d1dy2a_ d.169.1.5 (A:) Endosta 2.8 1.4E+02 0.01 4.8 2.6 72 547-624 35-115 (168)
7 d1ow1a_ b.131.1.3 (A:) SMART/H 2.6 1.6E+02 0.012 4.4 2.0 23 1050-1076 22-44 (170)
8 d1ekra_ d.58.21.1 (A:) Molybde 2.3 1.9E+02 0.013 3.9 0.7 18 1033-1050 55-75 (146)
9 d1c4ea_ g.3.4.1 (A:) Gurmarin, 2.1 2E+02 0.014 3.7 0.2 5 667-671 26-30 (35)
10 d2vbua1 b.43.5.2 (A:2-132) CTP 2.1 2E+02 0.015 3.7 3.2 23 130-152 87-110 (131)
No 1
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.19 E-value=14 Score=12.16 Aligned_cols=15 Identities=47% Similarity=1.134 Sum_probs=12.2
Q ss_pred HHHHHCCCHHHHHCC
Q ss_conf 575313630233000
Q 000935 92 PELCRNFSAVAWCGK 106 (1219)
Q Consensus 92 pElcRnFsavawc~k 106 (1219)
-.+|++|||-.||-.
T Consensus 13 ~~iC~~FsAyGWCP~ 27 (37)
T d2fc6a1 13 TSICDNFSAYGWCPL 27 (37)
T ss_dssp SCBCSHHHHTCCCTT
T ss_pred CCHHHHHHHCCCCCC
T ss_conf 446243122041678
No 2
>d1r9fa_ d.255.1.1 (A:) Tombusvirus P19 core protein, VP19 {Tomato bushy stunt virus, TBSV [TaxId: 12145]}
Probab=8.98 E-value=18 Score=11.35 Aligned_cols=22 Identities=50% Similarity=0.885 Sum_probs=16.0
Q ss_pred CCCC-CCCCCCCCCEEEEEEECC
Q ss_conf 3999-999999632035875205
Q 000935 456 MSPY-DPDEGPSITGWRVQRWES 477 (1219)
Q Consensus 456 MSPy-dPdeGPsiTGWRvqrWES 477 (1219)
.+|+ -|||.|+.+.||++.=|.
T Consensus 3 ~spFkLpDESPs~~EWRlH~~e~ 25 (124)
T d1r9fa_ 3 TSPFKLPDESPSWTEWRLHNDET 25 (124)
T ss_dssp CCSCSSCCCCCCHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHCCCCC
T ss_conf 78755899998625641104556
No 3
>d2g9da1 c.56.5.7 (A:3-342) Succinylglutamate desuccinylase AstE {Vibrio cholerae [TaxId: 666]}
Probab=3.64 E-value=1e+02 Score=5.77 Aligned_cols=88 Identities=27% Similarity=0.325 Sum_probs=56.5
Q ss_pred CHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEEECC------CCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEE
Q ss_conf 10357742023766568998526886432046058843069------999999998621135565567966511143677
Q 000935 238 KSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQW------PPSQNGAASKWFPTAKGLLGAGPSGIMAADVII 311 (1219)
Q Consensus 238 kstFeEKflsqq~qtsa~wpnflcvcsVf~sGsVQlhWsqw------Pp~qn~t~pkWF~TsKGlLg~GpSGIma~DAII 311 (1219)
||.|+..||+.--..+.-.+ +...--..-++..|..- |+ +.+..-|=...|-|.-|.-+.||.+-+.++
T Consensus 1 ~~~~~~~fl~~tl~~~~~~~----~~~~~~~~~~~~~~~~~g~l~~~p~-~~~~~~~~l~isagvHGnE~~gi~~l~~l~ 75 (340)
T d2g9da1 1 KSLFRQSFLFDSLDLDHPMV----AQTVRTEQGVTLKLHQRGVLEVIPA-QTDAATKNMVISCGIHGDETAPMELLDKWI 75 (340)
T ss_dssp CCSCSSCTTTTTSCSSSCCC----CEEEECTTSCEEEEEETTEEEEBCS-SCCSSCCEEEEEECSSSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCC----CCEEECCCCEEEEEECCCEEEEECC-CCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 94346769999864899878----5068758967999946974799767-668899849998403488678999999998
Q ss_pred CC--CCCEEEEE---ECCCCCCEE
Q ss_conf 06--98339941---011289618
Q 000935 312 TD--SGAMHVAG---VPIVNPSTV 330 (1219)
Q Consensus 312 td--sGalhVAG---VpivNPSTV 330 (1219)
.+ +|.+-..+ +++.||...
T Consensus 76 ~~l~~~~~~~~~~~l~~~~Np~A~ 99 (340)
T d2g9da1 76 DDIVSGFQPVAERCLFIMAHPQAT 99 (340)
T ss_dssp HHHHSSSSCCCSEEEEECCCHHHH
T ss_pred HHHHCCCCCCCEEEEEECCCHHHH
T ss_conf 633214755534899970499999
No 4
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.18 E-value=1.2e+02 Score=5.24 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=29.9
Q ss_pred ECCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf 127997854897636898863477873043099973589
Q 000935 150 IADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPS 188 (1219)
Q Consensus 150 ~adsp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPs 188 (1219)
+-..|.|.|..|.|||.+ +-|+.+-.-|.|-||--.+
T Consensus 6 ~~~~h~d~I~~l~fsp~~--~~L~s~s~Dg~v~iwd~~~ 42 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSK--SLLLITSWDGSLTVYKFDI 42 (342)
T ss_dssp CSSCCSSCEEEEEEEGGG--TEEEEEETTSEEEEEEEET
T ss_pred CCCCCCCCEEEEEEECCC--CEEEEEECCCEEEEEECCC
T ss_conf 688998978889995899--9999997999299997569
No 5
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.97 E-value=1.3e+02 Score=5.10 Aligned_cols=14 Identities=36% Similarity=0.722 Sum_probs=10.3
Q ss_pred CCCCHHHHCCCCCE
Q ss_conf 42000121011110
Q 000935 199 SCWQREHEWRQDIA 212 (1219)
Q Consensus 199 ~~wq~ehEWrqd~a 212 (1219)
.|..|-|||..+.+
T Consensus 22 vCPeC~hEW~~~~~ 35 (38)
T d2akla2 22 VCPECAHEWSPNEA 35 (38)
T ss_dssp EETTTTEEECTTTT
T ss_pred ECCCCCCCCCCCCC
T ss_conf 89755574785434
No 6
>d1dy2a_ d.169.1.5 (A:) Endostatin domain of collagen alpha1(xv) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.82 E-value=1.4e+02 Score=4.79 Aligned_cols=72 Identities=31% Similarity=0.582 Sum_probs=38.2
Q ss_pred CCCCCCCCCCHHHHHHEEECCCCCEEEEEEEECCEE------EEECC--CCCC-CCCEEEECCCCCCCCCCCCCCCCCCE
Q ss_conf 049999960055573002203786477566507303------43179--9784-33055721653347765766520012
Q 000935 547 SFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVH------IFSGP--NFAP-VDNYQISVGSAIAAPAFSSTSCCSAS 617 (1219)
Q Consensus 547 ~FdpfdlP~dvr~LAriVySAhGGEiavAflrGgVH------IFSGp--nf~p-VdnyqInVgsaIa~PAFSsTSCCsAS 617 (1219)
+|-+| |-+.+.-|..||+.+.--.+-|-=|||.|- ||+|. -|.+ +.-|-.+=---+.-|+.. --.
T Consensus 35 TFRAF-LSS~~QdL~siVr~~dR~~lPiVNlrgevLF~sW~siF~g~g~~~~~~~~IySFdGrdVl~D~~WP-----~K~ 108 (168)
T d1dy2a_ 35 TFRAF-LSSHLQDLSTVVRKAERFGLPIVNLKGQVLFNNWDSIFSGDGGQFNTHIPIYSFDGRDVMTDPSWP-----QKV 108 (168)
T ss_dssp CEEES-SCBTTBCGGGSSCGGGSSSCCEECTTSCEEESCSGGGGSSSCCBCCTTSCCBBTTSCBTTTCTTCS-----SCE
T ss_pred HHHHH-HCCCCCCHHHEECCCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC-----CCE
T ss_conf 02767-602524423302420047887274367650540999848888745899966617884202487776-----116
Q ss_pred EEECCCC
Q ss_conf 4321678
Q 000935 618 VWHDTNK 624 (1219)
Q Consensus 618 VWHDt~k 624 (1219)
|||..+.
T Consensus 109 vWHGS~~ 115 (168)
T d1dy2a_ 109 VWHGSNP 115 (168)
T ss_dssp EECCBCT
T ss_pred EEECCCC
T ss_conf 7736899
No 7
>d1ow1a_ b.131.1.3 (A:) SMART/HDAC1 associated repressor protein, SHARP {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.57 E-value=1.6e+02 Score=4.43 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=12.5
Q ss_pred CCCCCEEEEEEEECCEEECHHHHHCCC
Q ss_conf 677518999988072210014343013
Q 000935 1050 GSSNIQVRLHYIDGNYTVLPEVVEASL 1076 (1219)
Q Consensus 1050 gS~NiqvRLHyIdGnyTVlPEVvEAsL 1076 (1219)
-++.-.|++|||+|| ..+.+.+|
T Consensus 22 Kns~f~v~mH~l~Gn----~~la~~~l 44 (170)
T d1ow1a_ 22 KNDTAAVQLHFVSGN----NVLAHRSL 44 (170)
T ss_dssp TTEEEEEEEEEEEEC----HHHHHHHS
T ss_pred CCCCHHHEEEEEECC----HHHHHHHC
T ss_conf 056321127999687----88888607
No 8
>d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C, MoaC {Escherichia coli [TaxId: 562]}
Probab=2.26 E-value=1.9e+02 Score=3.94 Aligned_cols=18 Identities=44% Similarity=0.617 Sum_probs=13.6
Q ss_pred HHHHCC---CCCCCCCCCCCC
Q ss_conf 842014---788985655446
Q 000935 1033 LCRRTA---ALSHPLPVSQVG 1050 (1219)
Q Consensus 1033 LCrRTa---~L~HPLPvSQvg 1050 (1219)
--+||+ +|-||||.+.|.
T Consensus 55 aaK~Ts~lIPlCHpi~l~~v~ 75 (146)
T d1ekra_ 55 AAKRTWDLIPLCHPLMLSKVE 75 (146)
T ss_dssp HHHTHHHHSTTCCCCCCSEEE
T ss_pred HHHCCCCCCCCCCCCCCCEEE
T ss_conf 553250306445566325499
No 9
>d1c4ea_ g.3.4.1 (A:) Gurmarin, a sweet taste-suppressing polypeptide {Gymnema sylvestre [TaxId: 4068]}
Probab=2.13 E-value=2e+02 Score=3.71 Aligned_cols=5 Identities=80% Similarity=2.574 Sum_probs=0.0
Q ss_pred CCCCC
Q ss_conf 43210
Q 000935 667 VDWWD 671 (1219)
Q Consensus 667 VdWWD 671 (1219)
|+|||
T Consensus 26 vnwwd 30 (35)
T d1c4ea_ 26 VNWWD 30 (35)
T ss_dssp SSSSC
T ss_pred CCCCC
T ss_conf 14311
No 10
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk {Methanococcus jannaschii [TaxId: 2190]}
Probab=2.11 E-value=2e+02 Score=3.67 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=0.0
Q ss_pred EEEEEEECCCCCCC-EEEEEEECC
Q ss_conf 03488822799742-037896127
Q 000935 130 WIPIHIVIPERPTE-CAVFNVIAD 152 (1219)
Q Consensus 130 WiPihIviPerPtE-~avfnv~ad 152 (1219)
+|+-+|++|+|..- -.+.+++|.
T Consensus 87 ~i~~aii~P~rT~h~~~vvEiIap 110 (131)
T d2vbua1 87 KIDGAIVVPKKTYHSSEIIEIIAP 110 (131)
T ss_dssp EEEEEEEEESCCSSCEEEEEEECS
T ss_pred CEEEEEEEECCCCCCCCEEEEECC
T ss_conf 588999984777899987999788
Done!