Query 000936
Match_columns 1219
No_of_seqs 1130 out of 3758
Neff 9.1
Searched_HMMs 46136
Date Tue Apr 2 00:56:48 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0292 Vesicle coat complex C 100.0 1E-253 3E-258 2108.9 104.9 1195 1-1215 1-1202(1202)
2 PF06957 COPI_C: Coatomer (COP 100.0 2E-119 4E-124 1002.3 23.2 346 871-1219 71-422 (422)
3 KOG0276 Vesicle coat complex C 100.0 9.4E-82 2E-86 690.9 68.1 726 3-780 7-772 (794)
4 PF04053 Coatomer_WDAD: Coatom 100.0 3.7E-59 8.1E-64 538.5 38.4 413 338-769 2-443 (443)
5 KOG0271 Notchless-like WD40 re 100.0 4.3E-46 9.3E-51 388.9 30.5 329 3-395 109-479 (480)
6 KOG0318 WD40 repeat stress pro 100.0 4.6E-42 9.9E-47 372.8 53.9 476 4-518 54-601 (603)
7 KOG0292 Vesicle coat complex C 100.0 4.5E-41 9.8E-46 382.8 51.0 656 1-756 43-781 (1202)
8 KOG0319 WD40-repeat-containing 100.0 3.5E-40 7.7E-45 371.8 53.1 480 8-521 61-579 (775)
9 KOG0271 Notchless-like WD40 re 100.0 1.1E-42 2.3E-47 363.5 30.1 330 43-440 107-479 (480)
10 KOG0291 WD40-repeat-containing 100.0 2E-39 4.3E-44 365.2 54.8 447 9-521 96-614 (893)
11 KOG0276 Vesicle coat complex C 100.0 1.1E-39 2.3E-44 359.8 50.4 635 1-723 47-758 (794)
12 KOG0319 WD40-repeat-containing 100.0 3.8E-40 8.2E-45 371.6 43.1 478 2-515 97-614 (775)
13 KOG0318 WD40 repeat stress pro 100.0 7.1E-39 1.5E-43 348.0 50.6 462 3-480 97-602 (603)
14 KOG0306 WD40-repeat-containing 100.0 1.8E-39 3.8E-44 365.5 46.9 473 10-520 66-665 (888)
15 KOG0291 WD40-repeat-containing 100.0 5.1E-38 1.1E-42 353.9 54.4 422 3-490 139-622 (893)
16 KOG0272 U4/U6 small nuclear ri 100.0 2E-40 4.3E-45 351.9 24.3 274 7-309 173-449 (459)
17 KOG0286 G-protein beta subunit 100.0 2.4E-37 5.3E-42 313.9 34.2 279 3-309 49-334 (343)
18 KOG1538 Uncharacterized conser 100.0 6.3E-37 1.4E-41 338.4 37.8 621 11-784 14-688 (1081)
19 KOG0306 WD40-repeat-containing 100.0 8E-35 1.7E-39 328.1 42.3 411 2-484 100-668 (888)
20 KOG0272 U4/U6 small nuclear ri 100.0 1E-36 2.2E-41 323.8 24.4 283 49-395 173-458 (459)
21 KOG0279 G protein beta subunit 100.0 7.1E-35 1.5E-39 294.6 33.3 285 2-318 8-312 (315)
22 KOG0279 G protein beta subunit 100.0 4.6E-34 1E-38 288.8 33.5 296 42-397 6-313 (315)
23 KOG0295 WD40 repeat-containing 100.0 3.4E-35 7.3E-40 306.7 24.7 279 2-309 101-395 (406)
24 KOG0286 G-protein beta subunit 100.0 1.9E-33 4.1E-38 285.7 34.3 287 44-395 48-343 (343)
25 KOG0273 Beta-transducin family 100.0 2.3E-33 5E-38 301.8 33.7 326 5-397 174-523 (524)
26 KOG0263 Transcription initiati 100.0 5.9E-34 1.3E-38 326.2 27.7 248 4-280 373-651 (707)
27 KOG0285 Pleiotropic regulator 100.0 9.2E-34 2E-38 294.3 26.3 276 3-309 145-428 (460)
28 KOG0315 G-protein beta subunit 100.0 1.2E-32 2.7E-37 273.4 31.5 277 22-352 11-294 (311)
29 KOG0273 Beta-transducin family 100.0 1.3E-32 2.8E-37 296.1 32.1 268 10-309 236-512 (524)
30 KOG0645 WD40 repeat protein [G 100.0 7.6E-32 1.7E-36 271.5 34.4 279 2-312 7-303 (312)
31 KOG0284 Polyadenylation factor 100.0 2.1E-34 4.6E-39 304.6 16.8 271 10-310 97-370 (464)
32 KOG1408 WD40 repeat protein [F 100.0 2E-31 4.2E-36 297.5 40.9 501 5-523 74-717 (1080)
33 KOG0296 Angio-associated migra 100.0 3.4E-32 7.3E-37 284.7 32.5 312 2-317 57-396 (399)
34 cd00200 WD40 WD40 domain, foun 100.0 3.6E-31 7.8E-36 297.3 39.3 282 1-311 1-282 (289)
35 KOG0645 WD40 repeat protein [G 100.0 1.7E-30 3.7E-35 261.8 35.0 294 43-397 6-311 (312)
36 KOG0285 Pleiotropic regulator 100.0 8.1E-32 1.8E-36 279.9 26.0 301 42-401 142-443 (460)
37 KOG1539 WD repeat protein [Gen 100.0 1.7E-29 3.7E-34 288.9 47.1 475 4-517 109-646 (910)
38 KOG0265 U5 snRNP-specific prot 100.0 3.3E-31 7.1E-36 270.7 29.0 280 3-310 41-328 (338)
39 KOG0266 WD40 repeat-containing 100.0 4.3E-31 9.4E-36 314.7 34.1 279 4-309 153-441 (456)
40 KOG0316 Conserved WD40 repeat- 100.0 3.8E-31 8.2E-36 260.6 27.1 282 3-317 11-297 (307)
41 KOG0315 G-protein beta subunit 100.0 1.3E-30 2.9E-35 259.0 29.7 273 3-299 34-309 (311)
42 KOG1524 WD40 repeat-containing 100.0 6.7E-29 1.5E-33 269.9 45.4 651 7-785 12-719 (737)
43 KOG0263 Transcription initiati 100.0 2.8E-31 6.1E-36 304.3 27.8 244 46-318 373-648 (707)
44 KOG0296 Angio-associated migra 100.0 9.4E-30 2E-34 266.4 32.8 332 42-442 55-398 (399)
45 KOG2048 WD40 repeat protein [G 100.0 2.1E-27 4.6E-32 266.9 53.1 483 8-522 24-551 (691)
46 KOG0295 WD40 repeat-containing 100.0 9.1E-31 2E-35 273.7 24.4 289 43-395 100-404 (406)
47 KOG0282 mRNA splicing factor [ 100.0 1.2E-31 2.6E-36 290.2 17.5 282 1-309 206-494 (503)
48 KOG2041 WD40 repeat protein [G 100.0 4.5E-28 9.8E-33 270.4 45.5 649 10-784 15-790 (1189)
49 KOG0284 Polyadenylation factor 100.0 1.5E-31 3.3E-36 283.0 17.0 285 50-398 95-381 (464)
50 KOG0265 U5 snRNP-specific prot 100.0 2.1E-29 4.7E-34 257.4 28.8 285 44-393 40-334 (338)
51 KOG1539 WD repeat protein [Gen 100.0 1.2E-28 2.6E-33 281.9 37.9 430 1-478 194-646 (910)
52 KOG2106 Uncharacterized conser 100.0 6.6E-28 1.4E-32 261.1 40.6 468 3-517 98-624 (626)
53 KOG0275 Conserved WD40 repeat- 100.0 8.4E-31 1.8E-35 268.0 16.2 279 7-313 211-502 (508)
54 PLN00181 protein SPA1-RELATED; 100.0 3.2E-28 7E-33 312.2 42.7 277 5-310 479-783 (793)
55 KOG0281 Beta-TrCP (transducin 100.0 5.2E-31 1.1E-35 272.3 13.5 272 8-321 196-479 (499)
56 KOG1063 RNA polymerase II elon 100.0 3.8E-27 8.3E-32 264.7 44.3 448 2-480 47-699 (764)
57 KOG0293 WD40 repeat-containing 100.0 1.5E-29 3.2E-34 267.6 23.4 277 3-310 218-503 (519)
58 cd00200 WD40 WD40 domain, foun 100.0 4.2E-28 9.1E-33 272.4 36.5 287 45-395 3-289 (289)
59 KOG1408 WD40 repeat protein [F 100.0 2.6E-27 5.6E-32 264.8 39.9 476 29-519 56-671 (1080)
60 KOG0266 WD40 repeat-containing 100.0 2.7E-28 5.9E-33 290.7 34.5 294 45-397 152-454 (456)
61 KOG0313 Microtubule binding pr 100.0 1.5E-28 3.2E-33 258.5 26.6 279 7-317 103-416 (423)
62 KOG1538 Uncharacterized conser 100.0 6.2E-27 1.4E-31 259.6 40.7 422 1-475 45-519 (1081)
63 KOG2106 Uncharacterized conser 100.0 2.5E-26 5.4E-31 248.9 43.3 428 7-479 152-625 (626)
64 KOG2048 WD40 repeat protein [G 100.0 4.2E-25 9E-30 248.6 49.5 484 4-521 63-603 (691)
65 KOG0316 Conserved WD40 repeat- 100.0 1.4E-27 3E-32 235.5 26.1 287 43-395 9-297 (307)
66 KOG1407 WD40 repeat protein [F 100.0 3E-27 6.5E-32 237.0 28.2 278 3-312 14-294 (313)
67 PLN00181 protein SPA1-RELATED; 100.0 1.8E-26 3.8E-31 296.2 42.9 313 30-396 457-792 (793)
68 KOG0278 Serine/threonine kinas 100.0 2E-28 4.4E-33 243.3 18.3 288 4-350 9-301 (334)
69 KOG0282 mRNA splicing factor [ 100.0 2.1E-28 4.6E-33 265.1 19.5 291 42-395 205-503 (503)
70 KOG0281 Beta-TrCP (transducin 100.0 4.7E-29 1E-33 257.9 13.7 278 50-400 196-480 (499)
71 KOG0643 Translation initiation 100.0 1.9E-27 4.1E-32 239.1 24.5 279 4-312 5-309 (327)
72 KOG0643 Translation initiation 100.0 6.2E-27 1.3E-31 235.4 28.1 307 47-399 6-319 (327)
73 KOG1274 WD40 repeat protein [G 100.0 4E-24 8.7E-29 248.2 52.1 278 6-308 10-288 (933)
74 KOG1063 RNA polymerase II elon 100.0 1.8E-25 4E-30 251.3 39.0 467 15-517 20-646 (764)
75 KOG0293 WD40 repeat-containing 100.0 2.5E-27 5.5E-32 250.8 22.3 291 43-398 216-514 (519)
76 KOG0310 Conserved WD40 repeat- 100.0 8E-27 1.7E-31 253.6 25.6 277 9-315 26-304 (487)
77 KOG1407 WD40 repeat protein [F 100.0 4.7E-26 1E-30 228.5 27.5 287 45-396 14-310 (313)
78 KOG1446 Histone H3 (Lys4) meth 100.0 4.1E-25 8.8E-30 229.2 34.7 279 4-309 9-294 (311)
79 KOG0308 Conserved WD40 repeat- 99.9 4.3E-27 9.2E-32 262.5 20.1 361 56-489 29-402 (735)
80 KOG0278 Serine/threonine kinas 99.9 8.2E-27 1.8E-31 231.8 18.9 290 45-400 8-300 (334)
81 KOG0274 Cdc4 and related F-box 99.9 8.5E-26 1.8E-30 267.4 30.8 279 8-352 207-488 (537)
82 PTZ00421 coronin; Provisional 99.9 4E-25 8.7E-30 261.9 36.6 266 8-301 19-314 (493)
83 KOG0283 WD40 repeat-containing 99.9 3.1E-26 6.7E-31 265.6 24.7 255 2-280 259-578 (712)
84 KOG0973 Histone transcription 99.9 9.8E-26 2.1E-30 267.5 28.6 292 8-322 12-358 (942)
85 KOG0300 WD40 repeat-containing 99.9 4.4E-26 9.5E-31 233.2 21.9 291 1-320 140-477 (481)
86 KOG0299 U3 snoRNP-associated p 99.9 9.7E-26 2.1E-30 243.2 25.3 278 3-310 136-445 (479)
87 KOG0275 Conserved WD40 repeat- 99.9 1.3E-26 2.8E-31 237.4 17.6 284 49-395 211-507 (508)
88 KOG0288 WD40 repeat protein Ti 99.9 1.2E-26 2.6E-31 246.5 17.0 275 3-310 169-451 (459)
89 KOG0772 Uncharacterized conser 99.9 1.8E-25 4E-30 242.9 26.1 284 4-312 162-479 (641)
90 KOG0301 Phospholipase A2-activ 99.9 1.7E-25 3.7E-30 251.8 26.5 281 2-322 7-291 (745)
91 KOG0283 WD40 repeat-containing 99.9 1.9E-25 4E-30 259.1 25.3 246 43-318 258-575 (712)
92 KOG0294 WD40 repeat-containing 99.9 8.6E-25 1.9E-29 225.2 27.1 243 3-280 37-283 (362)
93 PTZ00420 coronin; Provisional 99.9 4.2E-24 9.1E-29 253.7 37.0 247 27-302 50-318 (568)
94 KOG0313 Microtubule binding pr 99.9 3.4E-25 7.3E-30 233.3 24.4 249 2-278 137-418 (423)
95 PTZ00421 coronin; Provisional 99.9 2.4E-24 5.2E-29 255.3 33.7 229 4-260 70-315 (493)
96 KOG1446 Histone H3 (Lys4) meth 99.9 1.2E-23 2.5E-28 218.5 34.3 292 42-398 5-304 (311)
97 KOG0647 mRNA export protein (c 99.9 8E-25 1.7E-29 224.2 25.1 273 8-309 26-312 (347)
98 KOG0274 Cdc4 and related F-box 99.9 9.8E-25 2.1E-29 258.4 29.0 248 2-286 242-490 (537)
99 KOG0268 Sof1-like rRNA process 99.9 4.7E-26 1E-30 238.0 15.4 274 2-310 59-335 (433)
100 KOG0305 Anaphase promoting com 99.9 1.5E-24 3.2E-29 246.5 28.5 261 15-309 183-450 (484)
101 KOG0640 mRNA cleavage stimulat 99.9 4.6E-25 1E-29 225.5 21.6 293 45-396 106-425 (430)
102 KOG0641 WD40 repeat protein [G 99.9 1.9E-23 4.1E-28 204.5 31.9 285 8-318 31-348 (350)
103 KOG0308 Conserved WD40 repeat- 99.9 2.1E-25 4.6E-30 249.1 20.5 344 14-398 29-394 (735)
104 KOG0289 mRNA splicing factor [ 99.9 2E-24 4.3E-29 230.7 26.8 275 10-312 220-498 (506)
105 KOG0277 Peroxisomal targeting 99.9 7.1E-25 1.5E-29 219.2 21.6 276 13-316 12-306 (311)
106 KOG0640 mRNA cleavage stimulat 99.9 9.4E-25 2E-29 223.3 22.8 280 4-311 107-417 (430)
107 KOG0277 Peroxisomal targeting 99.9 3.5E-25 7.5E-30 221.4 18.5 242 9-277 60-308 (311)
108 KOG0300 WD40 repeat-containing 99.9 1.4E-24 3E-29 222.2 23.2 297 42-398 139-477 (481)
109 KOG0289 mRNA splicing factor [ 99.9 1.9E-24 4.2E-29 230.9 25.1 251 1-277 253-505 (506)
110 KOG0310 Conserved WD40 repeat- 99.9 1.2E-24 2.6E-29 236.8 23.0 240 5-275 64-306 (487)
111 PTZ00420 coronin; Provisional 99.9 1.5E-23 3.2E-28 249.0 34.3 233 2-260 67-318 (568)
112 KOG3617 WD40 and TPR repeat-co 99.9 7.2E-24 1.6E-28 240.9 29.8 727 11-783 61-1022(1416)
113 KOG0299 U3 snoRNP-associated p 99.9 5.9E-24 1.3E-28 229.5 27.6 281 44-387 135-447 (479)
114 KOG0973 Histone transcription 99.9 4.3E-24 9.4E-29 253.6 29.1 305 50-404 12-362 (942)
115 KOG0288 WD40 repeat protein Ti 99.9 3.9E-25 8.4E-30 235.1 16.5 286 43-394 167-458 (459)
116 KOG0305 Anaphase promoting com 99.9 1.7E-23 3.7E-28 237.9 27.7 281 97-444 181-463 (484)
117 KOG1036 Mitotic spindle checkp 99.9 3.7E-23 8E-28 213.4 27.4 271 9-310 13-294 (323)
118 KOG0772 Uncharacterized conser 99.9 1.6E-23 3.5E-28 227.8 24.1 305 43-398 159-488 (641)
119 KOG0294 WD40 repeat-containing 99.9 1E-22 2.2E-27 210.0 28.2 251 24-309 4-270 (362)
120 KOG2041 WD40 repeat protein [G 99.9 1.9E-22 4.2E-27 225.8 32.2 690 1-781 63-905 (1189)
121 KOG2096 WD40 repeat protein [G 99.9 7.9E-23 1.7E-27 210.2 25.9 295 2-317 79-400 (420)
122 KOG1524 WD40 repeat-containing 99.9 1.5E-20 3.2E-25 205.4 40.5 584 22-757 76-717 (737)
123 KOG1332 Vesicle coat complex C 99.9 3.1E-23 6.8E-28 206.3 17.9 248 6-278 8-286 (299)
124 KOG1332 Vesicle coat complex C 99.9 6E-23 1.3E-27 204.3 18.6 247 48-318 8-285 (299)
125 KOG0641 WD40 repeat protein [G 99.9 1.3E-21 2.9E-26 191.6 27.3 247 4-278 84-349 (350)
126 KOG2096 WD40 repeat protein [G 99.9 1E-21 2.2E-26 202.1 26.7 309 33-440 63-400 (420)
127 KOG0264 Nucleosome remodeling 99.9 1.3E-22 2.7E-27 219.9 21.1 246 7-278 122-404 (422)
128 KOG0301 Phospholipase A2-activ 99.9 6.6E-22 1.4E-26 223.1 27.5 284 41-400 4-291 (745)
129 KOG0639 Transducin-like enhanc 99.9 1.7E-22 3.6E-27 218.7 21.2 277 7-316 417-701 (705)
130 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-20 3.8E-25 213.6 39.3 287 22-375 2-300 (300)
131 KOG2055 WD40 repeat protein [G 99.9 1.5E-21 3.4E-26 210.6 25.3 291 93-442 213-512 (514)
132 KOG3617 WD40 and TPR repeat-co 99.9 1.3E-21 2.9E-26 222.6 25.5 704 13-780 19-852 (1416)
133 KOG1445 Tumor-specific antigen 99.9 6.5E-21 1.4E-25 211.2 29.4 477 3-511 73-785 (1012)
134 KOG4283 Transcription-coupled 99.9 2.4E-21 5.3E-26 197.3 23.6 290 7-310 41-355 (397)
135 KOG0647 mRNA export protein (c 99.9 8.3E-21 1.8E-25 194.9 26.9 275 48-386 24-314 (347)
136 KOG2055 WD40 repeat protein [G 99.9 5.1E-21 1.1E-25 206.6 26.0 283 9-318 213-511 (514)
137 KOG1963 WD40 repeat protein [G 99.9 2E-19 4.2E-24 209.8 41.0 440 15-482 22-540 (792)
138 KOG0268 Sof1-like rRNA process 99.9 3.9E-22 8.5E-27 208.8 16.8 286 43-398 58-346 (433)
139 KOG0646 WD40 repeat protein [G 99.9 1E-21 2.2E-26 212.9 20.3 251 23-301 52-330 (476)
140 KOG0267 Microtubule severing p 99.9 4.9E-23 1.1E-27 232.7 9.3 239 3-270 22-260 (825)
141 KOG0267 Microtubule severing p 99.9 6.3E-23 1.4E-27 231.9 9.8 259 21-314 4-262 (825)
142 KOG0646 WD40 repeat protein [G 99.9 3.4E-21 7.4E-26 208.8 21.7 237 9-259 81-330 (476)
143 KOG0264 Nucleosome remodeling 99.9 8.7E-21 1.9E-25 205.8 23.7 234 49-308 122-391 (422)
144 KOG0269 WD40 repeat-containing 99.9 6.7E-22 1.5E-26 225.5 15.3 240 12-278 90-340 (839)
145 KOG0650 WD40 repeat nucleolar 99.9 1.6E-20 3.5E-25 208.1 24.5 276 4-309 395-724 (733)
146 COG2319 FOG: WD40 repeat [Gene 99.9 6.4E-18 1.4E-22 201.2 48.9 374 4-443 60-443 (466)
147 KOG0321 WD40 repeat-containing 99.9 2E-20 4.4E-25 209.1 25.0 291 15-321 55-393 (720)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.8E-19 8.2E-24 202.7 35.6 270 3-300 25-300 (300)
149 KOG1273 WD40 repeat protein [G 99.9 9.7E-20 2.1E-24 187.5 26.9 280 12-319 26-322 (405)
150 KOG1036 Mitotic spindle checkp 99.9 1.2E-19 2.6E-24 187.5 27.5 270 50-385 12-294 (323)
151 KOG0269 WD40 repeat-containing 99.9 5.3E-21 1.2E-25 218.2 18.8 261 12-300 42-319 (839)
152 KOG4328 WD40 protein [Function 99.9 3.4E-20 7.3E-25 200.3 23.5 289 3-316 180-490 (498)
153 KOG2445 Nuclear pore complex c 99.9 1.9E-19 4E-24 185.4 25.8 249 6-278 10-318 (361)
154 KOG1273 WD40 repeat protein [G 99.8 1E-19 2.3E-24 187.3 22.6 285 54-398 26-323 (405)
155 KOG1274 WD40 repeat protein [G 99.8 4.7E-19 1E-23 206.4 29.2 265 49-381 11-286 (933)
156 KOG0650 WD40 repeat nucleolar 99.8 3E-19 6.4E-24 198.1 25.4 295 44-395 393-733 (733)
157 KOG0639 Transducin-like enhanc 99.8 2.6E-20 5.6E-25 201.9 16.5 238 8-277 464-703 (705)
158 KOG0302 Ribosome Assembly prot 99.8 2E-19 4.3E-24 189.7 22.0 244 49-317 149-436 (440)
159 KOG4328 WD40 protein [Function 99.8 4E-19 8.8E-24 192.0 24.2 300 39-397 174-495 (498)
160 KOG1963 WD40 repeat protein [G 99.8 1.5E-17 3.3E-22 194.1 38.6 454 2-488 50-591 (792)
161 KOG1034 Transcriptional repres 99.8 1E-18 2.3E-23 181.4 24.6 303 5-312 34-375 (385)
162 KOG0302 Ribosome Assembly prot 99.8 4.8E-19 1E-23 186.9 21.8 246 5-276 147-436 (440)
163 COG2319 FOG: WD40 repeat [Gene 99.8 2.8E-16 6E-21 187.1 48.8 369 46-481 60-443 (466)
164 KOG1445 Tumor-specific antigen 99.8 3.5E-18 7.5E-23 189.8 28.3 212 43-281 71-296 (1012)
165 KOG0270 WD40 repeat-containing 99.8 3.5E-19 7.6E-24 192.1 18.9 245 13-283 177-454 (463)
166 KOG2445 Nuclear pore complex c 99.8 5.5E-18 1.2E-22 174.6 26.7 248 48-310 10-308 (361)
167 KOG2919 Guanine nucleotide-bin 99.8 2.8E-18 6.2E-23 177.5 23.0 271 11-310 51-360 (406)
168 KOG1009 Chromatin assembly com 99.8 1.2E-17 2.7E-22 178.3 26.8 324 9-402 13-377 (434)
169 KOG4378 Nuclear protein COP1 [ 99.8 4.3E-18 9.4E-23 184.7 21.5 291 26-377 7-305 (673)
170 KOG0321 WD40 repeat-containing 99.8 3.1E-18 6.8E-23 191.8 20.5 253 2-280 93-393 (720)
171 KOG4378 Nuclear protein COP1 [ 99.8 4.2E-18 9.1E-23 184.8 20.2 259 11-302 36-305 (673)
172 KOG0307 Vesicle coat complex C 99.8 3.5E-19 7.6E-24 212.9 12.5 245 9-281 64-330 (1049)
173 KOG0642 Cell-cycle nuclear pro 99.8 1.1E-18 2.3E-23 193.7 14.8 264 4-289 289-572 (577)
174 KOG0644 Uncharacterized conser 99.8 3.9E-19 8.5E-24 203.5 11.1 275 1-314 182-462 (1113)
175 KOG1009 Chromatin assembly com 99.8 7.8E-17 1.7E-21 172.3 27.8 324 135-514 13-366 (434)
176 KOG1034 Transcriptional repres 99.8 5.4E-18 1.2E-22 176.1 18.5 254 8-278 88-383 (385)
177 KOG4283 Transcription-coupled 99.8 2.8E-17 6E-22 168.0 22.6 247 6-277 98-364 (397)
178 KOG0270 WD40 repeat-containing 99.8 5E-17 1.1E-21 175.6 24.0 268 14-310 130-439 (463)
179 KOG0307 Vesicle coat complex C 99.8 1.5E-18 3.4E-23 207.4 13.6 271 12-309 9-316 (1049)
180 PF04762 IKI3: IKI3 family; I 99.8 1.2E-12 2.7E-17 166.0 66.1 560 8-621 74-721 (928)
181 KOG4497 Uncharacterized conser 99.7 2.1E-16 4.5E-21 163.9 21.9 368 14-434 13-424 (447)
182 KOG0322 G-protein beta subunit 99.7 1E-16 2.3E-21 161.9 16.4 247 4-277 9-322 (323)
183 KOG0303 Actin-binding protein 99.7 3.1E-16 6.7E-21 166.7 20.5 230 4-260 76-321 (472)
184 KOG1007 WD repeat protein TSSC 99.7 5.7E-16 1.2E-20 158.2 20.9 262 22-312 27-353 (370)
185 KOG0290 Conserved WD40 repeat- 99.7 1.4E-15 3E-20 155.7 22.9 277 11-315 46-361 (364)
186 KOG1517 Guanine nucleotide bin 99.7 1.2E-15 2.6E-20 179.5 25.5 277 8-310 1063-1371(1387)
187 KOG2919 Guanine nucleotide-bin 99.7 2.6E-15 5.6E-20 155.8 24.9 285 54-399 52-369 (406)
188 KOG1188 WD40 repeat protein [G 99.7 6E-16 1.3E-20 162.2 19.9 289 106-442 41-346 (376)
189 KOG4227 WD40 repeat protein [G 99.7 1.7E-15 3.6E-20 160.0 23.0 283 4-308 51-375 (609)
190 KOG4497 Uncharacterized conser 99.7 1.1E-15 2.4E-20 158.6 20.3 401 56-517 13-429 (447)
191 KOG1188 WD40 repeat protein [G 99.7 2.7E-16 5.8E-21 164.8 15.9 146 22-167 41-198 (376)
192 KOG1007 WD repeat protein TSSC 99.7 8.4E-16 1.8E-20 157.0 19.0 248 3-278 57-361 (370)
193 KOG0642 Cell-cycle nuclear pro 99.7 3.1E-16 6.7E-21 174.4 16.5 239 46-310 289-551 (577)
194 KOG3616 Selective LIM binding 99.7 3.5E-15 7.7E-20 168.5 24.6 146 651-829 451-606 (1636)
195 KOG0303 Actin-binding protein 99.7 1.4E-15 3.1E-20 161.7 20.1 243 11-282 29-298 (472)
196 KOG0649 WD40 repeat protein [G 99.7 4E-14 8.7E-19 141.5 28.3 262 10-301 11-296 (325)
197 KOG0644 Uncharacterized conser 99.7 6E-17 1.3E-21 185.8 9.5 268 44-346 183-468 (1113)
198 KOG1912 WD40 repeat protein [G 99.7 7.4E-13 1.6E-17 151.7 41.2 420 10-442 16-551 (1062)
199 PRK11028 6-phosphogluconolacto 99.7 1.3E-13 2.9E-18 159.2 36.4 260 25-309 6-292 (330)
200 KOG0649 WD40 repeat protein [G 99.7 4.2E-14 9.1E-19 141.4 26.0 282 96-439 13-313 (325)
201 KOG1587 Cytoplasmic dynein int 99.7 7.5E-15 1.6E-19 172.9 23.2 245 9-279 242-517 (555)
202 KOG4227 WD40 repeat protein [G 99.7 1.2E-14 2.6E-19 153.7 21.9 258 87-400 50-325 (609)
203 KOG2110 Uncharacterized conser 99.6 2E-13 4.4E-18 145.0 30.5 238 51-321 5-250 (391)
204 KOG1587 Cytoplasmic dynein int 99.6 6.1E-14 1.3E-18 165.2 28.7 279 73-399 222-518 (555)
205 KOG1517 Guanine nucleotide bin 99.6 4.7E-14 1E-18 166.3 27.2 292 52-399 1065-1383(1387)
206 KOG1523 Actin-related protein 99.6 2.2E-14 4.9E-19 149.3 21.4 249 47-318 6-277 (361)
207 KOG1334 WD40 repeat protein [G 99.6 1.6E-15 3.4E-20 165.6 13.3 301 2-317 135-464 (559)
208 KOG1920 IkappaB kinase complex 99.6 2.2E-11 4.7E-16 147.4 49.1 304 9-348 68-394 (1265)
209 PRK11028 6-phosphogluconolacto 99.6 1E-12 2.2E-17 151.9 37.0 275 66-398 5-305 (330)
210 PRK01742 tolB translocation pr 99.6 3.1E-14 6.8E-19 169.7 25.0 233 30-301 183-426 (429)
211 KOG1523 Actin-related protein 99.6 3.9E-14 8.5E-19 147.5 20.6 253 4-269 5-269 (361)
212 KOG1912 WD40 repeat protein [G 99.6 2.3E-12 4.9E-17 147.7 35.0 361 2-396 48-550 (1062)
213 KOG0322 G-protein beta subunit 99.6 1.3E-14 2.9E-19 146.8 14.8 249 43-310 6-313 (323)
214 KOG1240 Protein kinase contain 99.6 2.3E-13 5E-18 163.3 25.6 226 36-289 1034-1284(1431)
215 KOG2139 WD40 repeat protein [G 99.6 7.2E-13 1.6E-17 139.9 25.9 251 10-312 99-367 (445)
216 KOG1272 WD40-repeat-containing 99.6 6.8E-15 1.5E-19 159.6 11.1 269 11-315 131-404 (545)
217 PRK01742 tolB translocation pr 99.6 7.4E-14 1.6E-18 166.5 21.1 218 3-259 197-426 (429)
218 PF02239 Cytochrom_D1: Cytochr 99.6 5.8E-12 1.3E-16 145.2 35.9 319 22-398 6-348 (369)
219 KOG0771 Prolactin regulatory e 99.6 2.2E-14 4.8E-19 155.3 14.7 196 13-235 148-355 (398)
220 KOG2110 Uncharacterized conser 99.6 1.3E-12 2.9E-17 138.9 26.9 239 7-281 3-251 (391)
221 KOG1310 WD40 repeat protein [G 99.6 2.8E-14 6.1E-19 157.2 13.9 228 3-238 44-307 (758)
222 KOG0290 Conserved WD40 repeat- 99.6 2.2E-13 4.7E-18 139.8 19.3 234 7-269 94-357 (364)
223 KOG0771 Prolactin regulatory e 99.5 6.8E-14 1.5E-18 151.5 14.9 201 55-279 148-355 (398)
224 KOG1240 Protein kinase contain 99.5 7.6E-13 1.7E-17 159.0 25.1 255 2-282 1041-1338(1431)
225 KOG2139 WD40 repeat protein [G 99.5 2.8E-12 6.1E-17 135.5 25.3 317 94-442 99-431 (445)
226 KOG2111 Uncharacterized conser 99.5 4E-11 8.7E-16 125.4 33.2 240 53-322 7-259 (346)
227 KOG1310 WD40 repeat protein [G 99.5 1.2E-13 2.7E-18 152.2 15.0 226 44-286 43-311 (758)
228 PRK03629 tolB translocation pr 99.5 5.1E-12 1.1E-16 150.3 29.9 235 31-301 179-428 (429)
229 KOG2111 Uncharacterized conser 99.5 3.1E-11 6.8E-16 126.2 31.3 239 10-280 6-258 (346)
230 PRK04922 tolB translocation pr 99.5 6.3E-12 1.4E-16 150.3 28.1 234 31-300 184-432 (433)
231 KOG1272 WD40-repeat-containing 99.5 9E-14 1.9E-18 151.1 10.8 228 54-316 132-359 (545)
232 PF02239 Cytochrom_D1: Cytochr 99.5 3.1E-10 6.7E-15 131.0 40.2 323 108-490 9-357 (369)
233 PRK05137 tolB translocation pr 99.5 1.3E-11 2.9E-16 147.7 30.0 233 31-300 182-432 (435)
234 COG4946 Uncharacterized protei 99.5 1E-09 2.3E-14 119.8 40.8 152 201-385 356-508 (668)
235 PRK03629 tolB translocation pr 99.5 8.3E-12 1.8E-16 148.5 27.3 221 4-259 193-428 (429)
236 PRK02889 tolB translocation pr 99.5 7.5E-12 1.6E-16 149.1 26.3 235 31-301 176-425 (427)
237 KOG1354 Serine/threonine prote 99.5 5.5E-12 1.2E-16 132.5 20.7 258 9-281 25-362 (433)
238 COG5354 Uncharacterized protei 99.5 1.1E-10 2.4E-15 129.2 31.7 373 34-509 15-418 (561)
239 KOG1334 WD40 repeat protein [G 99.4 1.1E-12 2.4E-17 143.6 15.5 309 86-442 135-466 (559)
240 PF04762 IKI3: IKI3 family; I 99.4 5.2E-07 1.1E-11 115.4 68.4 472 10-516 22-561 (928)
241 PRK04922 tolB translocation pr 99.4 1.3E-11 2.8E-16 147.5 25.5 221 3-258 197-432 (433)
242 PRK05137 tolB translocation pr 99.4 2.9E-11 6.3E-16 144.8 27.5 221 3-259 195-433 (435)
243 KOG2315 Predicted translation 99.4 1.1E-10 2.4E-15 130.9 29.2 302 204-519 34-390 (566)
244 COG5354 Uncharacterized protei 99.4 1.1E-10 2.3E-15 129.2 28.6 349 5-433 28-420 (561)
245 KOG2314 Translation initiation 99.4 6.8E-11 1.5E-15 131.5 27.1 321 13-398 214-574 (698)
246 PRK02889 tolB translocation pr 99.4 1.4E-11 3.1E-16 146.6 23.8 222 3-259 189-425 (427)
247 KOG2314 Translation initiation 99.4 2.3E-10 4.9E-15 127.4 30.9 321 95-470 212-555 (698)
248 KOG2321 WD40 repeat protein [G 99.4 3.1E-11 6.7E-16 134.7 24.0 277 7-312 49-335 (703)
249 KOG2315 Predicted translation 99.4 3.6E-10 7.8E-15 126.8 31.8 361 74-500 12-410 (566)
250 KOG0974 WD-repeat protein WDR6 99.4 2.8E-10 6.1E-15 136.3 32.7 198 9-237 87-291 (967)
251 KOG2394 WD40 protein DMR-N9 [G 99.4 1.2E-11 2.7E-16 136.9 19.3 218 11-258 125-384 (636)
252 KOG3881 Uncharacterized conser 99.4 5.6E-11 1.2E-15 127.6 21.7 263 8-301 54-342 (412)
253 KOG0974 WD-repeat protein WDR6 99.4 8.3E-10 1.8E-14 132.3 33.5 150 15-167 139-290 (967)
254 KOG2394 WD40 protein DMR-N9 [G 99.4 6.1E-12 1.3E-16 139.3 14.1 137 9-145 219-384 (636)
255 PF08662 eIF2A: Eukaryotic tra 99.4 6.1E-11 1.3E-15 124.3 21.0 150 13-167 9-181 (194)
256 PF04053 Coatomer_WDAD: Coatom 99.4 1.2E-10 2.6E-15 135.8 25.5 347 291-723 33-439 (443)
257 KOG2114 Vacuolar assembly/sort 99.4 1.6E-09 3.4E-14 127.2 34.1 445 255-777 30-499 (933)
258 KOG3881 Uncharacterized conser 99.4 5.4E-11 1.2E-15 127.7 20.3 221 7-259 103-342 (412)
259 KOG1409 Uncharacterized conser 99.3 4.2E-11 9.2E-16 126.2 17.9 251 1-280 16-272 (404)
260 PF10282 Lactonase: Lactonase, 99.3 8.7E-09 1.9E-13 119.3 39.3 266 203-498 35-345 (345)
261 PF10282 Lactonase: Lactonase, 99.3 3.8E-08 8.3E-13 113.9 43.0 264 24-310 2-311 (345)
262 KOG2321 WD40 repeat protein [G 99.3 5.5E-10 1.2E-14 124.9 24.9 282 49-397 49-343 (703)
263 TIGR02800 propeller_TolB tol-p 99.3 7.7E-10 1.7E-14 132.5 28.5 221 31-287 170-405 (417)
264 PRK00178 tolB translocation pr 99.3 1.1E-09 2.4E-14 131.4 28.9 234 32-301 180-428 (430)
265 COG4946 Uncharacterized protei 99.3 3.2E-08 6.9E-13 108.5 36.3 408 50-512 35-510 (668)
266 PRK00178 tolB translocation pr 99.3 9.2E-10 2E-14 132.1 27.0 221 4-259 193-428 (430)
267 PRK04792 tolB translocation pr 99.3 1.2E-09 2.7E-14 130.4 27.6 233 32-300 199-446 (448)
268 COG2706 3-carboxymuconate cycl 99.3 1.8E-08 4E-13 108.5 32.7 286 225-537 15-341 (346)
269 TIGR02658 TTQ_MADH_Hv methylam 99.3 4E-08 8.6E-13 110.7 37.1 280 20-352 11-336 (352)
270 TIGR02800 propeller_TolB tol-p 99.2 6.9E-10 1.5E-14 133.0 24.8 201 3-235 183-398 (417)
271 PF08662 eIF2A: Eukaryotic tra 99.2 8.6E-10 1.9E-14 115.7 20.5 151 55-237 9-182 (194)
272 PRK01029 tolB translocation pr 99.2 5.3E-09 1.1E-13 124.1 29.6 239 31-301 165-425 (428)
273 PRK04792 tolB translocation pr 99.2 2.1E-09 4.7E-14 128.4 25.6 217 7-258 215-446 (448)
274 KOG1354 Serine/threonine prote 99.2 1.2E-09 2.6E-14 115.1 20.2 188 92-280 24-246 (433)
275 KOG1409 Uncharacterized conser 99.2 7.3E-10 1.6E-14 117.0 18.4 251 42-322 15-273 (404)
276 PRK01029 tolB translocation pr 99.2 3.5E-09 7.6E-14 125.5 26.8 224 5-260 180-426 (428)
277 COG2706 3-carboxymuconate cycl 99.2 1.5E-07 3.3E-12 101.5 34.6 273 72-399 15-323 (346)
278 KOG1920 IkappaB kinase complex 99.1 5.2E-06 1.1E-10 101.9 50.2 222 93-319 68-322 (1265)
279 TIGR02658 TTQ_MADH_Hv methylam 99.1 3.8E-07 8.3E-12 102.8 37.6 241 212-489 53-339 (352)
280 KOG4547 WD40 repeat-containing 99.1 2.1E-08 4.5E-13 114.0 24.9 189 18-235 2-221 (541)
281 KOG4547 WD40 repeat-containing 99.1 2.2E-08 4.8E-13 113.8 24.3 188 61-279 3-221 (541)
282 KOG1064 RAVE (regulator of V-A 99.1 8.6E-10 1.9E-14 137.3 13.6 192 7-238 2206-2402(2439)
283 KOG0280 Uncharacterized conser 99.0 2.4E-08 5.2E-13 103.8 20.7 240 10-277 70-332 (339)
284 PLN02919 haloacid dehalogenase 99.0 2.3E-07 5.1E-12 120.9 34.2 261 13-282 571-892 (1057)
285 KOG1064 RAVE (regulator of V-A 99.0 2E-09 4.3E-14 134.2 13.4 218 29-289 2188-2409(2439)
286 KOG0280 Uncharacterized conser 99.0 1E-07 2.3E-12 99.1 23.8 270 9-308 14-319 (339)
287 TIGR03300 assembly_YfgL outer 98.9 1E-06 2.2E-11 104.0 31.5 263 20-293 64-353 (377)
288 KOG4532 WD40-like repeat conta 98.9 6.1E-07 1.3E-11 92.2 23.5 233 29-292 50-296 (344)
289 COG5170 CDC55 Serine/threonine 98.9 5.3E-08 1.2E-12 101.4 15.8 255 8-277 25-366 (460)
290 KOG0309 Conserved WD40 repeat- 98.9 1.7E-08 3.7E-13 115.8 13.2 263 9-300 24-309 (1081)
291 PLN02919 haloacid dehalogenase 98.9 2.5E-06 5.4E-11 111.5 34.9 262 55-357 571-899 (1057)
292 KOG2066 Vacuolar assembly/sort 98.9 3E-06 6.6E-11 99.7 31.4 188 136-399 40-235 (846)
293 KOG4190 Uncharacterized conser 98.8 9.8E-09 2.1E-13 113.7 9.3 216 44-287 728-957 (1034)
294 PF15492 Nbas_N: Neuroblastoma 98.8 4.2E-06 9E-11 88.1 27.6 234 15-289 3-270 (282)
295 KOG4190 Uncharacterized conser 98.8 3.4E-08 7.4E-13 109.5 12.3 182 85-291 727-919 (1034)
296 PRK04043 tolB translocation pr 98.8 1.8E-06 3.8E-11 101.9 27.8 193 11-237 189-403 (419)
297 PRK04043 tolB translocation pr 98.8 2.4E-06 5.1E-11 100.9 28.6 194 250-482 189-402 (419)
298 KOG4532 WD40-like repeat conta 98.8 1.1E-06 2.3E-11 90.5 21.6 243 13-280 71-333 (344)
299 KOG2114 Vacuolar assembly/sort 98.8 4E-05 8.7E-10 91.1 37.0 374 373-784 72-493 (933)
300 KOG0309 Conserved WD40 repeat- 98.8 4.1E-08 8.8E-13 112.9 11.9 241 12-279 70-340 (1081)
301 PF08450 SGL: SMP-30/Gluconola 98.7 3.8E-05 8.3E-10 84.6 34.0 217 56-307 4-242 (246)
302 PF08450 SGL: SMP-30/Gluconola 98.7 4E-05 8.6E-10 84.4 33.6 224 14-267 4-244 (246)
303 KOG3914 WD repeat protein WDR4 98.7 1.7E-07 3.6E-12 102.1 14.0 159 11-171 64-229 (390)
304 KOG1832 HIV-1 Vpr-binding prot 98.7 1.4E-08 3.1E-13 118.3 5.7 259 3-308 1095-1377(1516)
305 KOG0882 Cyclophilin-related pe 98.7 3.2E-07 7E-12 100.5 15.0 264 7-287 7-314 (558)
306 KOG3616 Selective LIM binding 98.7 4.3E-06 9.4E-11 96.3 23.9 75 441-517 326-402 (1636)
307 TIGR03300 assembly_YfgL outer 98.6 7.2E-05 1.6E-09 88.2 34.1 264 63-356 65-348 (377)
308 PF11768 DUF3312: Protein of u 98.6 0.00092 2E-08 77.6 39.8 266 391-695 238-545 (545)
309 PF13360 PQQ_2: PQQ-like domai 98.6 4.3E-05 9.2E-10 83.7 28.4 231 29-285 1-237 (238)
310 KOG1832 HIV-1 Vpr-binding prot 98.5 6.4E-08 1.4E-12 113.1 5.4 224 42-307 1092-1318(1516)
311 PF07433 DUF1513: Protein of u 98.5 5.4E-05 1.2E-09 82.5 27.4 253 208-515 8-281 (305)
312 PF07433 DUF1513: Protein of u 98.5 7.9E-05 1.7E-09 81.2 27.6 236 10-273 5-280 (305)
313 KOG3914 WD repeat protein WDR4 98.5 9E-07 1.9E-11 96.5 12.6 156 54-238 65-227 (390)
314 KOG2066 Vacuolar assembly/sort 98.5 2.3E-06 5E-11 100.7 16.4 148 10-172 40-194 (846)
315 KOG0882 Cyclophilin-related pe 98.5 1.3E-06 2.8E-11 95.9 13.4 212 49-287 7-240 (558)
316 COG5170 CDC55 Serine/threonine 98.5 2.2E-06 4.8E-11 89.6 14.1 265 203-470 25-355 (460)
317 PRK11138 outer membrane biogen 98.4 0.00013 2.7E-09 86.6 28.8 260 20-289 68-364 (394)
318 PF15492 Nbas_N: Neuroblastoma 98.4 0.00022 4.8E-09 75.4 26.5 217 57-310 3-249 (282)
319 PF14583 Pectate_lyase22: Olig 98.3 0.0016 3.5E-08 73.3 32.3 334 36-397 15-381 (386)
320 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.0022 4.8E-08 66.4 30.3 104 63-168 23-126 (354)
321 PRK02888 nitrous-oxide reducta 98.3 0.00015 3.3E-09 86.0 24.9 304 149-470 68-449 (635)
322 KOG4714 Nucleoporin [Nuclear s 98.3 6.7E-06 1.5E-10 84.5 11.7 146 20-166 100-255 (319)
323 PF11768 DUF3312: Protein of u 98.3 0.0094 2E-07 69.5 38.3 87 437-523 239-333 (545)
324 KOG1897 Damage-specific DNA bi 98.3 0.03 6.5E-07 68.7 53.9 499 7-517 304-896 (1096)
325 PRK11138 outer membrane biogen 98.3 0.00084 1.8E-08 79.6 31.6 265 63-356 69-363 (394)
326 KOG4714 Nucleoporin [Nuclear s 98.3 1.3E-05 2.8E-10 82.4 13.1 206 44-279 28-255 (319)
327 KOG1275 PAB-dependent poly(A) 98.2 5E-05 1.1E-09 90.6 19.4 182 63-276 147-340 (1118)
328 PF13360 PQQ_2: PQQ-like domai 98.2 0.00041 8.9E-09 75.9 26.1 182 71-284 1-197 (238)
329 KOG2695 WD40 repeat protein [G 98.2 2.3E-06 5E-11 91.0 7.5 146 26-174 229-385 (425)
330 PF00400 WD40: WD domain, G-be 98.2 3.9E-06 8.5E-11 62.6 6.7 39 41-79 1-39 (39)
331 KOG1275 PAB-dependent poly(A) 98.2 2.7E-05 5.8E-10 92.8 16.0 185 20-232 146-340 (1118)
332 KOG1645 RING-finger-containing 98.2 3.5E-05 7.7E-10 84.0 15.7 257 33-318 175-460 (463)
333 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0018 4E-08 75.3 31.6 315 102-469 1-344 (353)
334 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0004 8.6E-09 80.8 25.1 286 213-509 1-346 (353)
335 KOG1645 RING-finger-containing 98.2 9.5E-05 2.1E-09 80.7 17.9 93 75-168 175-269 (463)
336 PF00400 WD40: WD domain, G-be 98.2 4.9E-06 1.1E-10 62.0 6.0 36 2-37 4-39 (39)
337 KOG2695 WD40 repeat protein [G 98.2 6.3E-06 1.4E-10 87.8 8.8 167 109-300 228-402 (425)
338 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0035 7.5E-08 65.0 27.1 143 21-165 23-165 (354)
339 KOG3621 WD40 repeat-containing 98.1 0.00015 3.2E-09 85.0 19.4 137 8-144 32-179 (726)
340 COG5290 IkappaB kinase complex 98.1 0.0038 8.2E-08 73.8 29.2 101 676-777 938-1044(1243)
341 PF08596 Lgl_C: Lethal giant l 98.0 0.0017 3.7E-08 75.5 26.2 276 11-317 3-333 (395)
342 KOG3621 WD40 repeat-containing 98.0 0.00074 1.6E-08 79.3 22.5 118 136-279 34-155 (726)
343 PF14583 Pectate_lyase22: Olig 98.0 0.0014 3E-08 73.9 23.5 285 210-510 41-370 (386)
344 PF06433 Me-amine-dh_H: Methyl 98.0 0.014 3.1E-07 64.7 30.4 274 31-360 17-332 (342)
345 KOG1897 Damage-specific DNA bi 97.9 0.12 2.7E-06 63.6 49.8 451 16-521 446-944 (1096)
346 PF04841 Vps16_N: Vps16, N-ter 97.9 0.011 2.3E-07 69.9 30.4 244 74-346 62-314 (410)
347 cd00216 PQQ_DH Dehydrogenases 97.8 0.014 2.9E-07 71.1 30.7 283 63-356 61-434 (488)
348 cd00216 PQQ_DH Dehydrogenases 97.8 0.018 3.8E-07 70.1 30.6 250 22-308 111-455 (488)
349 PF00780 CNH: CNH domain; Int 97.8 0.019 4.1E-07 64.3 28.9 251 214-496 5-271 (275)
350 PF06977 SdiA-regulated: SdiA- 97.8 0.0053 1.2E-07 66.4 22.9 208 88-316 16-247 (248)
351 PF06433 Me-amine-dh_H: Methyl 97.7 0.031 6.8E-07 62.1 28.4 56 435-490 270-330 (342)
352 COG0823 TolB Periplasmic compo 97.7 0.00069 1.5E-08 79.5 16.8 164 338-512 218-391 (425)
353 PRK02888 nitrous-oxide reducta 97.7 0.0076 1.6E-07 72.0 24.5 234 259-519 140-404 (635)
354 PF04841 Vps16_N: Vps16, N-ter 97.7 0.029 6.3E-07 66.3 29.4 209 14-260 33-271 (410)
355 COG3391 Uncharacterized conser 97.7 0.055 1.2E-06 63.5 31.4 253 11-289 32-294 (381)
356 PF00780 CNH: CNH domain; Int 97.6 0.034 7.4E-07 62.3 27.4 241 19-290 5-267 (275)
357 COG0823 TolB Periplasmic compo 97.6 0.0041 8.9E-08 73.1 20.1 194 243-471 187-388 (425)
358 PF06977 SdiA-regulated: SdiA- 97.5 0.05 1.1E-06 58.9 25.9 210 242-477 15-247 (248)
359 PF02897 Peptidase_S9_N: Proly 97.5 0.13 2.8E-06 61.5 32.2 243 11-283 125-409 (414)
360 KOG2280 Vacuolar assembly/sort 97.5 0.15 3.3E-06 61.1 30.4 107 654-763 447-568 (829)
361 PF08596 Lgl_C: Lethal giant l 97.5 0.015 3.3E-07 67.7 22.6 289 53-398 3-336 (395)
362 PF03178 CPSF_A: CPSF A subuni 97.4 0.032 6.9E-07 64.1 25.0 214 31-274 2-261 (321)
363 KOG1008 Uncharacterized conser 97.4 5E-05 1.1E-09 87.4 0.9 204 8-235 55-276 (783)
364 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.52 1.1E-05 57.7 35.1 109 21-132 69-198 (527)
365 PF12234 Rav1p_C: RAVE protein 97.4 0.02 4.2E-07 69.4 22.2 104 417-521 34-158 (631)
366 PF02897 Peptidase_S9_N: Proly 97.3 0.092 2E-06 62.8 27.9 244 207-485 126-409 (414)
367 KOG1008 Uncharacterized conser 97.3 8.2E-05 1.8E-09 85.7 1.1 159 6-166 99-276 (783)
368 COG3391 Uncharacterized conser 97.3 0.51 1.1E-05 55.4 32.9 247 33-310 13-272 (381)
369 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.33 7.2E-06 59.4 31.5 264 22-289 121-501 (527)
370 PRK13616 lipoprotein LpqB; Pro 97.1 0.034 7.3E-07 68.4 21.2 214 225-472 328-559 (591)
371 PF15390 DUF4613: Domain of un 97.1 0.35 7.6E-06 56.7 27.6 150 9-166 19-187 (671)
372 COG3386 Gluconolactonase [Carb 97.0 0.21 4.5E-06 56.2 25.0 226 14-267 29-274 (307)
373 KOG4640 Anaphase-promoting com 97.0 0.0024 5.2E-08 74.2 9.8 79 9-88 20-99 (665)
374 PRK10115 protease 2; Provision 97.0 1.7 3.7E-05 55.1 35.6 240 206-483 128-397 (686)
375 COG3490 Uncharacterized protei 96.9 0.36 7.9E-06 51.4 23.6 120 40-162 57-186 (366)
376 COG3386 Gluconolactonase [Carb 96.9 0.33 7.2E-06 54.6 25.2 232 209-470 29-274 (307)
377 PF03178 CPSF_A: CPSF A subuni 96.9 0.13 2.8E-06 59.0 22.6 141 21-166 42-203 (321)
378 PF15390 DUF4613: Domain of un 96.8 0.99 2.2E-05 53.1 28.3 118 202-319 54-186 (671)
379 COG3204 Uncharacterized protei 96.8 0.24 5.2E-06 53.4 21.7 206 90-316 82-309 (316)
380 KOG4640 Anaphase-promoting com 96.7 0.0066 1.4E-07 70.7 9.6 93 51-144 20-114 (665)
381 PRK13616 lipoprotein LpqB; Pro 96.7 0.12 2.7E-06 63.6 21.2 187 52-271 350-561 (591)
382 PF14655 RAB3GAP2_N: Rab3 GTPa 96.7 0.15 3.2E-06 59.4 20.6 91 209-300 6-118 (415)
383 KOG2079 Vacuolar assembly/sort 96.7 0.019 4.1E-07 70.9 13.7 100 20-122 98-202 (1206)
384 PF14655 RAB3GAP2_N: Rab3 GTPa 96.7 1.9 4.1E-05 50.4 29.5 271 14-288 6-408 (415)
385 smart00320 WD40 WD40 repeats. 96.6 0.0049 1.1E-07 44.4 5.6 39 41-79 2-40 (40)
386 PF05694 SBP56: 56kDa selenium 96.6 0.94 2E-05 52.0 25.7 242 20-267 86-392 (461)
387 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.15 3.3E-06 47.0 15.9 100 54-160 2-109 (111)
388 COG3490 Uncharacterized protei 96.6 0.16 3.5E-06 54.0 18.1 160 209-380 72-240 (366)
389 KOG0985 Vesicle coat protein c 96.6 0.021 4.6E-07 69.6 13.1 114 612-725 1038-1159(1666)
390 KOG0985 Vesicle coat protein c 96.6 0.13 2.8E-06 63.2 19.3 151 600-780 366-520 (1666)
391 PF08553 VID27: VID27 cytoplas 96.5 0.1 2.2E-06 65.1 18.5 138 112-277 501-646 (794)
392 PF14783 BBS2_Mid: Ciliary BBS 96.5 0.19 4.1E-06 46.4 15.5 100 12-118 2-109 (111)
393 COG3204 Uncharacterized protei 96.4 0.66 1.4E-05 50.1 21.2 173 48-237 82-266 (316)
394 smart00320 WD40 WD40 repeats. 96.3 0.011 2.3E-07 42.4 5.9 39 83-121 2-40 (40)
395 PRK10115 protease 2; Provision 96.3 5.3 0.00011 50.8 34.8 111 53-165 128-255 (686)
396 KOG2280 Vacuolar assembly/sort 96.3 0.59 1.3E-05 56.3 22.3 104 675-781 509-612 (829)
397 PF07995 GSDH: Glucose / Sorbo 96.3 1.5 3.3E-05 50.3 25.9 257 11-273 3-330 (331)
398 COG5290 IkappaB kinase complex 96.2 4.5 9.9E-05 49.1 35.2 44 738-781 932-975 (1243)
399 PF14870 PSII_BNR: Photosynthe 96.2 2.9 6.3E-05 46.8 29.3 182 222-439 120-301 (302)
400 PLN03081 pentatricopeptide (PP 96.2 0.12 2.7E-06 66.2 18.2 130 652-781 267-418 (697)
401 KOG2079 Vacuolar assembly/sort 96.2 0.07 1.5E-06 66.2 14.5 102 62-165 98-203 (1206)
402 TIGR03118 PEPCTERM_chp_1 conse 96.2 1.7 3.6E-05 47.4 23.0 224 249-490 23-289 (336)
403 PF10647 Gmad1: Lipoprotein Lp 96.2 1.6 3.5E-05 47.9 24.3 192 250-474 25-231 (253)
404 PLN03218 maturation of RBCL 1; 96.1 0.12 2.5E-06 68.1 17.3 177 604-780 447-675 (1060)
405 PLN03081 pentatricopeptide (PP 96.1 0.078 1.7E-06 68.0 15.7 130 651-780 367-520 (697)
406 PHA02713 hypothetical protein; 96.1 0.36 7.8E-06 59.7 20.8 65 215-281 463-536 (557)
407 TIGR03118 PEPCTERM_chp_1 conse 96.1 2.9 6.3E-05 45.7 25.7 235 54-300 25-307 (336)
408 PF08553 VID27: VID27 cytoplas 96.1 0.1 2.3E-06 65.0 15.5 143 21-165 493-647 (794)
409 PLN03218 maturation of RBCL 1; 96.0 0.11 2.5E-06 68.2 16.6 177 604-780 517-745 (1060)
410 COG5276 Uncharacterized conser 96.0 3 6.5E-05 45.0 25.8 185 248-444 86-287 (370)
411 KOG2395 Protein involved in va 95.9 0.11 2.3E-06 59.8 13.2 144 20-166 344-501 (644)
412 PRK13684 Ycf48-like protein; P 95.8 4.9 0.00011 46.2 28.9 269 9-316 45-328 (334)
413 PRK11788 tetratricopeptide rep 95.7 0.2 4.3E-06 59.3 16.1 178 603-780 78-308 (389)
414 PF05694 SBP56: 56kDa selenium 95.7 1.8 3.9E-05 49.8 22.0 174 210-385 135-393 (461)
415 PF05096 Glu_cyclase_2: Glutam 95.7 1.9 4.1E-05 46.7 21.1 156 10-170 45-208 (264)
416 TIGR02521 type_IV_pilW type IV 95.6 0.22 4.7E-06 53.4 14.6 128 652-779 73-228 (234)
417 KOG4441 Proteins containing BT 95.6 0.76 1.7E-05 56.7 20.5 230 19-279 283-547 (571)
418 TIGR03074 PQQ_membr_DH membran 95.6 11 0.00023 48.2 40.2 111 21-132 194-353 (764)
419 PRK10049 pgaA outer membrane p 95.5 7.2 0.00016 50.5 30.2 111 1005-1140 360-470 (765)
420 PRK11788 tetratricopeptide rep 95.5 0.25 5.5E-06 58.3 15.8 129 652-780 77-240 (389)
421 KOG2444 WD40 repeat protein [G 95.4 0.017 3.6E-07 59.7 4.4 142 107-278 32-177 (238)
422 TIGR03074 PQQ_membr_DH membran 95.3 13 0.00027 47.6 33.5 149 21-170 260-482 (764)
423 TIGR00990 3a0801s09 mitochondr 95.3 0.33 7.2E-06 61.2 16.7 150 631-780 341-534 (615)
424 PRK13684 Ycf48-like protein; P 95.3 7.5 0.00016 44.7 29.0 145 367-518 174-330 (334)
425 KOG4499 Ca2+-binding protein R 95.2 3.2 7E-05 43.2 19.6 95 207-301 160-264 (310)
426 KOG2395 Protein involved in va 95.2 0.28 6.2E-06 56.5 13.3 139 65-233 348-499 (644)
427 TIGR00990 3a0801s09 mitochondr 95.1 0.26 5.6E-06 62.3 14.6 161 603-769 374-577 (615)
428 KOG1898 Splicing factor 3b, su 95.0 15 0.00033 46.6 36.6 100 21-120 549-668 (1205)
429 KOG4499 Ca2+-binding protein R 94.9 5.7 0.00012 41.5 20.7 221 22-266 28-272 (310)
430 PLN03077 Protein ECB2; Provisi 94.9 0.5 1.1E-05 62.3 17.1 127 654-780 333-481 (857)
431 TIGR02604 Piru_Ver_Nterm putat 94.9 8.3 0.00018 45.1 25.4 141 10-154 14-202 (367)
432 PF10647 Gmad1: Lipoprotein Lp 94.8 7.9 0.00017 42.6 23.7 153 53-226 25-187 (253)
433 PF07995 GSDH: Glucose / Sorbo 94.8 9.9 0.00021 43.7 26.9 249 54-312 4-327 (331)
434 PHA02713 hypothetical protein; 94.7 0.73 1.6E-05 57.0 16.8 189 20-238 303-537 (557)
435 PF12894 Apc4_WD40: Anaphase-p 94.6 0.093 2E-06 40.5 5.5 34 9-43 11-44 (47)
436 PF14870 PSII_BNR: Photosynthe 94.6 9.7 0.00021 42.7 31.4 269 9-314 16-299 (302)
437 KOG4441 Proteins containing BT 94.6 2.3 5E-05 52.6 20.6 190 60-281 282-502 (571)
438 KOG2444 WD40 repeat protein [G 94.4 0.11 2.3E-06 53.9 7.0 104 21-124 70-178 (238)
439 PLN03077 Protein ECB2; Provisi 94.4 0.6 1.3E-05 61.6 16.1 129 653-781 433-581 (857)
440 smart00036 CNH Domain found in 94.3 12 0.00026 42.4 30.1 239 20-288 12-280 (302)
441 PF05096 Glu_cyclase_2: Glutam 94.3 9.8 0.00021 41.4 24.9 198 42-268 34-250 (264)
442 PF10168 Nup88: Nuclear pore c 94.1 11 0.00025 47.5 25.3 75 205-280 85-181 (717)
443 PHA03098 kelch-like protein; P 94.0 2.4 5.1E-05 52.6 19.5 147 20-168 294-467 (534)
444 TIGR02917 PEP_TPR_lipo putativ 94.0 1.2 2.7E-05 58.7 18.2 125 655-779 612-761 (899)
445 PF12894 Apc4_WD40: Anaphase-p 94.0 0.12 2.7E-06 39.8 5.0 36 50-86 10-45 (47)
446 KOG1916 Nuclear protein, conta 93.8 0.011 2.5E-07 71.0 -1.4 125 6-164 129-264 (1283)
447 COG3063 PilF Tfp pilus assembl 93.7 0.49 1.1E-05 49.4 10.2 162 605-781 46-234 (250)
448 KOG2247 WD40 repeat-containing 93.6 0.019 4.2E-07 65.0 0.0 242 12-257 37-304 (615)
449 PRK11447 cellulose synthase su 93.6 1.5 3.2E-05 59.8 17.8 127 654-780 583-737 (1157)
450 KOG2003 TPR repeat-containing 93.5 1 2.2E-05 50.8 12.8 84 671-754 590-686 (840)
451 PF13429 TPR_15: Tetratricopep 93.5 0.29 6.3E-06 54.9 9.2 105 651-755 117-241 (280)
452 PRK15174 Vi polysaccharide exp 93.4 1.6 3.4E-05 55.4 16.5 127 654-780 86-238 (656)
453 PF12234 Rav1p_C: RAVE protein 93.3 2.1 4.5E-05 52.5 16.3 112 51-164 29-155 (631)
454 KOG2377 Uncharacterized conser 93.2 1 2.2E-05 51.0 12.4 140 368-510 25-173 (657)
455 PRK10747 putative protoheme IX 93.1 2.9 6.2E-05 49.6 17.3 181 601-781 91-321 (398)
456 PRK12370 invasion protein regu 93.0 1.1 2.5E-05 55.5 14.1 124 658-781 318-468 (553)
457 TIGR02521 type_IV_pilW type IV 92.9 2 4.2E-05 45.9 14.3 127 654-780 41-195 (234)
458 KOG3630 Nuclear pore complex, 92.8 0.81 1.7E-05 57.5 11.7 145 95-266 102-261 (1405)
459 PHA03098 kelch-like protein; P 92.8 3.5 7.5E-05 51.1 18.0 106 61-168 293-417 (534)
460 PF14727 PHTB1_N: PTHB1 N-term 92.6 26 0.00056 41.2 33.4 144 20-166 36-205 (418)
461 PRK09782 bacteriophage N4 rece 92.6 1.6 3.4E-05 57.3 15.0 149 606-754 521-703 (987)
462 PF11725 AvrE: Pathogenicity f 92.5 20 0.00043 48.0 23.9 382 50-478 361-770 (1774)
463 PF10168 Nup88: Nuclear pore c 92.5 23 0.00049 44.9 24.4 25 53-77 86-110 (717)
464 TIGR02917 PEP_TPR_lipo putativ 92.5 2 4.4E-05 56.7 16.6 178 603-780 372-593 (899)
465 KOG2063 Vacuolar assembly/sort 92.1 45 0.00097 42.8 30.3 40 743-782 493-532 (877)
466 COG5010 TadD Flp pilus assembl 92.1 1.5 3.2E-05 46.9 11.2 79 652-730 108-199 (257)
467 PRK10370 formate-dependent nit 92.0 1.2 2.7E-05 46.8 10.9 85 670-754 70-170 (198)
468 COG3292 Predicted periplasmic 92.0 32 0.0007 40.9 23.8 267 9-314 164-441 (671)
469 PRK10049 pgaA outer membrane p 91.9 1.6 3.6E-05 56.4 14.1 78 676-753 362-452 (765)
470 PF13429 TPR_15: Tetratricopep 91.9 0.17 3.7E-06 56.8 4.5 128 652-780 16-172 (280)
471 PF14761 HPS3_N: Hermansky-Pud 91.8 11 0.00025 39.4 17.1 169 324-517 22-212 (215)
472 KOG3630 Nuclear pore complex, 91.7 1.3 2.9E-05 55.7 11.8 153 14-166 46-229 (1405)
473 PRK15174 Vi polysaccharide exp 91.7 6 0.00013 50.2 18.4 127 654-780 222-378 (656)
474 COG5276 Uncharacterized conser 91.5 24 0.00052 38.4 30.5 195 52-280 87-287 (370)
475 PF04840 Vps16_C: Vps16, C-ter 91.1 3.4 7.3E-05 46.9 13.7 116 652-784 185-305 (319)
476 TIGR02604 Piru_Ver_Nterm putat 91.1 8.6 0.00019 45.0 17.7 150 94-267 14-202 (367)
477 PF12895 Apc3: Anaphase-promot 90.9 1.1 2.4E-05 39.7 7.9 75 657-753 2-83 (84)
478 PRK15359 type III secretion sy 90.6 1.4 2.9E-05 43.9 9.0 80 654-754 34-118 (144)
479 PF10395 Utp8: Utp8 family; I 90.5 53 0.0011 40.6 24.5 109 378-489 193-314 (670)
480 PRK12370 invasion protein regu 90.4 4.1 8.9E-05 50.6 15.0 126 654-779 348-498 (553)
481 PHA02790 Kelch-like protein; P 90.2 11 0.00024 45.8 18.3 104 61-167 270-386 (480)
482 PF14761 HPS3_N: Hermansky-Pud 90.2 17 0.00036 38.2 16.4 103 217-320 29-164 (215)
483 PF07569 Hira: TUP1-like enhan 90.1 1.5 3.2E-05 46.9 9.3 48 491-538 67-115 (219)
484 PRK11447 cellulose synthase su 90.0 4 8.6E-05 55.7 15.6 103 652-754 611-737 (1157)
485 KOG2003 TPR repeat-containing 89.8 3.1 6.7E-05 47.1 11.4 101 600-700 425-551 (840)
486 KOG1898 Splicing factor 3b, su 89.7 72 0.0016 40.9 36.4 191 339-538 854-1067(1205)
487 KOG2076 RNA polymerase III tra 89.4 4.8 0.0001 50.0 13.7 123 655-777 184-339 (895)
488 PHA02790 Kelch-like protein; P 89.2 14 0.00031 44.9 18.0 144 20-168 271-426 (480)
489 PF13432 TPR_16: Tetratricopep 89.1 0.86 1.9E-05 37.9 5.3 48 652-699 5-57 (65)
490 PF08728 CRT10: CRT10; InterP 88.8 9.9 0.00022 47.2 15.9 142 21-164 49-245 (717)
491 COG4590 ABC-type uncharacteriz 88.6 1.6 3.4E-05 49.5 8.2 195 128-345 213-415 (733)
492 KOG2247 WD40 repeat-containing 88.4 0.36 7.8E-06 55.2 3.2 138 367-511 36-180 (615)
493 KOG1983 Tomosyn and related SN 88.3 23 0.00051 46.7 19.9 108 10-123 36-144 (993)
494 KOG4460 Nuclear pore complex, 88.1 25 0.00055 41.1 17.2 98 54-173 106-206 (741)
495 PF10602 RPN7: 26S proteasome 88.0 4.1 8.8E-05 42.0 10.4 97 659-755 18-140 (177)
496 PF14853 Fis1_TPR_C: Fis1 C-te 87.9 0.9 1.9E-05 36.1 4.3 34 1106-1140 11-44 (53)
497 KOG3060 Uncharacterized conser 87.7 2.7 5.8E-05 44.7 8.7 103 597-699 55-180 (289)
498 KOG1155 Anaphase-promoting com 87.7 2.4 5.3E-05 48.6 9.0 50 670-719 429-486 (559)
499 PF09976 TPR_21: Tetratricopep 87.5 4.8 0.0001 39.9 10.5 101 654-754 21-144 (145)
500 COG4590 ABC-type uncharacteriz 87.2 1.4 3.1E-05 49.8 6.8 236 20-285 126-393 (733)
No 1
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-253 Score=2108.90 Aligned_cols=1195 Identities=67% Similarity=1.105 Sum_probs=1124.8
Q ss_pred CcceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 000936 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 1 ml~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1219)
|+++|+..+.+|++++|||..+|++++.++|.|++||+++++++.+|.+|++||++++|||++++|+|||+|.+|+||++
T Consensus 1 mltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 1 MLTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred CcchhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEE
Q 000936 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1219)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~ 160 (1219)
++.+|++++.||.++|+.+.||+..+||+|+|+|++|+||||++++++.+++||+++|+|.+|+|..+.++++|.|++||
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCccccccCC--ccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 000936 161 VWDIGALRKKTVSPA--DDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1219)
Q Consensus 161 vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~ 238 (1219)
|||+.+.+++...|. ...+.....+.+++|+.|.+++++++||+++|++++|+|..++|++|++|+.|++|.++..+.
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 999999999888777 344555566678999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEe
Q 000936 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1219)
Q Consensus 239 ~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l 318 (1219)
|++.++++|.++|+++.|+|..++|++.|+|++|+|||+.+++.+++|++.++++|.++.+|..+++++|+|+|++||++
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKL 320 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecC
Q 000936 319 ERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1219)
Q Consensus 319 ~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~ 398 (1219)
++++|++.++++.++|++++.|+.+|+.+.+...+.+++..+. +|.++++++|+|..+.+++++..++|.+.++.+++
T Consensus 321 eRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~--~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk 398 (1202)
T KOG0292|consen 321 ERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGT--LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPK 398 (1202)
T ss_pred cccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCc--ccCCcceeeeccccCeEEEEeccCCCeEEEEEecC
Confidence 9999999999999999999999999999999999999998875 47799999999999999999988999999999998
Q ss_pred CCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCCceeEeeeCCcceEEEEEeCCCcEEEEeCCeEEEEE
Q 000936 399 DSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFD 478 (1219)
Q Consensus 399 ~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~i~~~~~v~~l~~s~dg~~L~s~d~~I~l~d 478 (1219)
+..+... ......+.+..+.|..+++|++...++.++.|.++.++..+++..+..+..|++..+|.+|+.++..|.+||
T Consensus 399 ~~~~~~~-~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~~~~~v~lfd 477 (1202)
T KOG0292|consen 399 DSDGVSD-GKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLRSPDSVTLFD 477 (1202)
T ss_pred cccccCC-chhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEEcCCeEEEEE
Confidence 8665543 245566778889999999999999999999999999999999999889999999999999999999999999
Q ss_pred cCCCeEEEEEecCCeeEEEEcCCCCEEEEEeCCeEEEEecCccceeeeeeeeEEeeeEEecCCeEEEEcCCeeeEEecCC
Q 000936 479 LQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNG 558 (1219)
Q Consensus 479 l~~~~~l~~~~~~~v~~v~ws~dg~~la~~s~~~i~i~~~~l~~~~~~~e~~~iks~~wd~~~~~iy~t~~~iky~l~~g 558 (1219)
+++++.+.++..+.+++|+||+|++++|..+++.|+|++++++.+|++||++||||++||++++|||+|+||+||++.+|
T Consensus 478 vQq~~~~~si~~s~vkyvvws~dm~~vAll~Kh~i~i~~kkL~l~~sihEtiriksgawde~gVfiYtT~nHikYal~~G 557 (1202)
T KOG0292|consen 478 VQQKKKVGSIKVSKVKYVVWSNDMSRVALLSKHTITIADKKLELLCSIHETIRIKSGAWDEDGVFIYTTLNHIKYALENG 557 (1202)
T ss_pred eecceEEEEEecCceeEEEEcCccchhhhcccceEEEEecchhheecchheeEeeeceeccCceEEEEehhhhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEeccccEEEEEEeCCEEEEEecCCceEEEEeCchhHhHHHHHhccCHHHHHHhhhcCcccchhHHHHHHhCCChh
Q 000936 559 DSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPE 638 (1219)
Q Consensus 559 ~~~~i~~~~~~~~l~~~~~~~l~~l~~~~~~~~~~ld~~e~~f~~~l~~~~~~~a~~~i~~~~~~~~~i~~~l~~~g~~e 638 (1219)
|.|+|+|++.|+|+++++++.+||++|+++++.+.||++||+||+||.+++|+++++|+++++++||+|++||+++||||
T Consensus 558 D~GIikTLd~~iyitkv~gn~V~cl~rd~~~~~~~IDptEy~FKlALi~k~ydeVl~lI~ns~LvGqaiIaYLqKkgype 637 (1202)
T KOG0292|consen 558 DSGIIKTLDKPIYITKVKGNKVFCLNRDGEIECLTIDPTEYRFKLALLNKKYDEVLHLIKNSNLVGQAIIAYLQKKGYPE 637 (1202)
T ss_pred CcceEEecccceEEEEeeCCEEEEEecCCCeEEEeechHHHHHHHHHHhhhhHHHHHHHHhcCcccHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCcchhhhHHhhcCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHH
Q 000936 639 VALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKL 718 (1219)
Q Consensus 639 ~Al~~~~d~~~rf~lal~~g~~~~A~~~a~~l~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l 718 (1219)
+|||||+|+++||+||++|||+++|++.|++++++.+|++||+.|+.|||+++||+|||++++|++|+|||+++||.+||
T Consensus 638 iAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 638 IALHFVKDERTRFELALECGNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKL 717 (1202)
T ss_pred eeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcCCCCCCCCCC-CCCCCCC
Q 000936 719 SKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEG-KAPSLLM 797 (1219)
Q Consensus 719 ~kl~~~~~~~~~~~~~~~~al~lgd~~eai~i~~~~g~~~~A~~la~~~g~~~~a~~l~~~~~~~~~~~~~~-~~~~~~~ 797 (1219)
+||+++++.|+|....+++++|+||++|+++|+.++|++++||..|++||+.++|+++.++.+..+..+|+. +++.+++
T Consensus 718 ~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylta~~~G~~~~ae~l~ee~~~~~~~lP~~~~~a~ll~ 797 (1202)
T KOG0292|consen 718 SKMMKIAEIRNDATGQFQNALYLGDVKERVKILENGGQLPLAYLTAAAHGLEDQAEKLGEELEKQVPSLPEVDPNASLLQ 797 (1202)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHHHhhcCcHHHHHHHHHhhccccCCCCCCCCcccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999877779987 7999999
Q ss_pred CCCCccCCCCCCcccccccccccccccCCCCCcccccccccCCCcc---ccccccccCCCCCcchhhcccCccccccccc
Q 000936 798 PPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGAVDEEEEAVEGDWGE---ELDMVDVDGLQNGDVAAILEDGEVAEEGEEE 874 (1219)
Q Consensus 798 p~~~~~~~~~wp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1219)
||+|+...+|||++.+++++|++++.+.+... .++.+.++.|++ +.+..+. ++... .++..++.++||
T Consensus 798 pP~p~~~l~nwPLl~~s~~~fe~~~~~~~~~~--av~~~~e~~~g~e~~~~e~~l~--ed~~~-----~~d~~g~~~~dE 868 (1202)
T KOG0292|consen 798 PPVPIMPLENWPLLSVSKGTFEGALLSRSSSL--AVDRDDEGDWGEEGWDVELMLG--EDGIL-----FNDGAGEVGEDE 868 (1202)
T ss_pred CCCccccccCCchhhhhhhhhhHhhhhhcccC--cccccccccccccchhhhhccc--ccccc-----ccccccccCccc
Confidence 99999777899999999999999998443322 233222222332 1111111 11111 111122234677
Q ss_pred cCCCCCCCCCCCCCCCCCCCCccccccceecCCCCCCchhHHHhhcchHHHHHHcCCHHHHHHHHHhhcCcccccccHHH
Q 000936 875 EGGWDLEDLELPPEAETPKAPVNARSAVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSM 954 (1219)
Q Consensus 875 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~f~~a~~~l~~~~~~~~~~p~~~~ 954 (1219)
++|||++|++++++++.++ ..+.+.|++|..|.+.+ .|.+||+|||||||||+|++||++|++|+|++||.|||.+
T Consensus 869 ~~gWdv~d~~l~pe~~~~~---~~~~~~~~~p~~~~~~~-~W~~nS~L~adhvaAGsf~tA~~lL~dqvgvv~f~p~Kt~ 944 (1202)
T KOG0292|consen 869 GGGWDVGDLDLPPEEDTPK---GADDGEFVVPAQGMSVS-IWSNNSPLAADHVAAGSFETAMRLLHDQVGVVNFGPLKTH 944 (1202)
T ss_pred ccCcCcccccCCccccccc---cccccceecCCCCCcch-hccccCcchhhhhhcCchHHHHHHHHhhhcceecccHHhh
Confidence 8899999888887775554 33457799999997777 9999999999999999999999999999999999999999
Q ss_pred HHHHHhcceeeeccCCCCCChhhhhhcCCCCCCCCCCCCCCcccccHhHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHc
Q 000936 955 FLDLHSGSHTYLRAFSSAPVIPLAVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTI 1034 (1219)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1219)
|+++|.+||+|+|+.|++| +.+++-|+|.|.+..+ .+|+++.++++|..+|++||++||.|||.+|+++||+||++|
T Consensus 945 fl~iy~~sR~~l~~~~~~~-~~~~~~R~~se~~~~~--~~P~v~~~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i 1021 (1202)
T KOG0292|consen 945 FLKIYAGSRTYLRATPCLP-VSLYPVRNWSETSSKQ--GLPAVGFKLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSI 1021 (1202)
T ss_pred hhhhccccceeccCCCCcc-cccccccccccchhhc--cCCcccccHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhhe
Confidence 9999999999999999999 7777788888887644 899999999999999999999999999999999999999999
Q ss_pred ceeEecChhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCc-hhhhHHHHHhcccCCChhhHHHHHHHHHHHHHHhhchH
Q 000936 1035 PLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDP-VRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLA 1113 (1219)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~e~~r~~~~~~~-~r~~el~~y~t~~~l~~~h~~l~l~~a~~~~~k~~n~~ 1113 (1219)
|+++|++++|+++++++|+||||||+||+||++||+|+++. +|+||||||||||+|||.|++||||+||+++||+|||+
T Consensus 1022 ~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~k 1101 (1202)
T KOG0292|consen 1022 PLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLK 1101 (1202)
T ss_pred eEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHHHhcCCCCceeecCCCCCCeeEecccceeccCCCccccCCCCCcccCCCCCC
Q 000936 1114 TAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEG 1193 (1219)
Q Consensus 1114 ~a~~~a~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~i~~~~~~~~c~~~~~~~~~~~~~ 1193 (1219)
||++||+|||++.|+ +++|+|||||+++||++|+|+++|+|||+|||+||++||+|||+|.|.++||||||+|++.++|
T Consensus 1102 tAs~fa~rLlel~~~-~~~A~q~rki~~a~eknp~Da~~l~yd~~n~f~iC~~t~~Piy~g~p~~~cp~cga~y~~~~~g 1180 (1202)
T KOG0292|consen 1102 TAAEFARRLLELAPS-PPVAEQARKIKQAAEKNPTDAYELNYDPHNPFVICGATYVPIYRGRPDVSCPYCGACFVPSSKG 1180 (1202)
T ss_pred HHHHHHHHHHhhCCC-ChHHHHHHHHHHHhhcCcccccccCcccCCCeeEecccceeeecCCCCcCCCcccceeccccCC
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCccccceeCCCCcCccccC
Q 000936 1194 QLCSVCDLAVVGVDASGLLCSP 1215 (1219)
Q Consensus 1194 ~~c~~~~~~~~g~~~~g~~~~~ 1215 (1219)
++|+||.+++||++++||||++
T Consensus 1181 ~iCtvc~V~~ig~~~~Glris~ 1202 (1202)
T KOG0292|consen 1181 NICTVCDVGVIGADASGLRISA 1202 (1202)
T ss_pred ceeeeeeeeeecCcccceeecC
Confidence 9999999999999999999985
No 2
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=100.00 E-value=1.8e-119 Score=1002.27 Aligned_cols=346 Identities=58% Similarity=0.969 Sum_probs=255.2
Q ss_pred cccccCCCCCC-CCCCCCCCCCCCC-CccccccceecCCCCCCchhHHHhhcchHHHHHHcCCHHHHHHHHHhhcCcccc
Q 000936 871 GEEEEGGWDLE-DLELPPEAETPKA-PVNARSAVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNF 948 (1219)
Q Consensus 871 ~~~~~~~w~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~f~~a~~~l~~~~~~~~~ 948 (1219)
++||++||||| ||++|+|++.+.. ....+.+.|++|++|.++.+.|++||++||||||||+||+||+|||||||||||
T Consensus 71 ~~~e~~gWD~ddDl~lp~e~d~~~~~~~~~~~~~~v~p~~g~~~~~~W~~nS~laadhvAAGsFetAm~LLnrQiGivnF 150 (422)
T PF06957_consen 71 DEDEEGGWDLDDDLDLPEELDVPDGVAGSAEDGYFVAPTPGSSESQIWVRNSSLAADHVAAGSFETAMQLLNRQIGIVNF 150 (422)
T ss_dssp ------------------------------------------HHHHHHHHH--SHHHHHHCT-HHHHHHHHHHHC-B---
T ss_pred ccccccccccccccCCCcccccccccccccccccccCCCCCCCHHHHHHHcCCcHHHHHHhCCHHHHHHHHHHHhCcccc
Confidence 35677899998 8999987755542 223356789999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhcceeeeccCCCCCChhhhhhcCCCCCCCCCCCCCCcccccHhHHHHHHHHHHHhcccCCHHHHHHHHH
Q 000936 949 APLKSMFLDLHSGSHTYLRAFSSAPVIPLAVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFL 1028 (1219)
Q Consensus 949 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1028 (1219)
+|||++|+++|.+|++|+|++|++|||..|++|||.+...++ .+|+++.++++|.++||.|||+||+|||+||+..||
T Consensus 151 ~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~--~lP~i~~~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr 228 (422)
T PF06957_consen 151 EPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKN--GLPAIPLSLSSLEERLKEGYKLFTAGKFEEAIEIFR 228 (422)
T ss_dssp GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCC--G-BB----HHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhceecccCCCCCCccccccCCcccccccc--CCCcCcCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999999999988776555 799999999999999999999999999999999999
Q ss_pred HHHHHcceeEecChhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC---c-hhhhHHHHHhcccCCChhhHHHHHHHHHH
Q 000936 1029 SILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDD---P-VRQQELAAYFTHCNLQMPHLRLALLNAMS 1104 (1219)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~e~~r~~~~~~---~-~r~~el~~y~t~~~l~~~h~~l~l~~a~~ 1104 (1219)
+|||+|||++|++++|+++++++|+||||||+||+||++||+|+++ + ||+||||||||||+|||.|++||||+||+
T Consensus 229 ~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~ 308 (422)
T PF06957_consen 229 SILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMS 308 (422)
T ss_dssp HHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHH
T ss_pred HHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876 3 89999999999999999999999999999
Q ss_pred HHHHhhchHHHHHHHHHHhccCCCchhHHHHHHHHHHHHhcCCCCceeecCCCCCCeeEecccceeccCCCccccCCCCC
Q 000936 1105 VCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCT 1184 (1219)
Q Consensus 1105 ~~~k~~n~~~a~~~a~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~i~~~~~~~~c~~~~ 1184 (1219)
++||+|||+||++||||||+++|+ +++++|||||+++|||+|+|+|+||||++|||+||++||||||||++.|+|||||
T Consensus 309 ~~~K~KNf~tAa~FArRLLel~p~-~~~a~qArKil~~~e~~~tDa~~i~yD~~npF~ICa~s~tPIY~G~~~v~CP~cg 387 (422)
T PF06957_consen 309 QAFKLKNFITAASFARRLLELNPS-PEVAEQARKILQACERNPTDAHEIDYDERNPFDICAASYTPIYRGSPSVKCPYCG 387 (422)
T ss_dssp HCCCTTBHHHHHHHHHHHHCT--S-CHHHHHHHHHHHHHCCS--BSS--S--TTS-EEEBTTT--EEETTS-EEE-TTT-
T ss_pred HHHHhccHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCceecCCCCCCCceeeecccccccCCCCCeeCCCCC
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccCccccceeCCCCcCccccCCCCC
Q 000936 1185 TRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 1219 (1219)
Q Consensus 1185 ~~~~~~~~~~~c~~~~~~~~g~~~~g~~~~~~~~~ 1219 (1219)
|+|+|+|||++|+||+|++||++++||||+++|||
T Consensus 388 A~y~~~~kG~lC~vC~l~~IG~~a~GLris~~q~r 422 (422)
T PF06957_consen 388 AKYHPEYKGQLCPVCELSEIGADASGLRISPSQFR 422 (422)
T ss_dssp -EEEGGGTTSB-TTTTTBBTT---S----SGGG--
T ss_pred CccChhhCCCCCCCCcceeeCCcceeeEecccccC
Confidence 99999999999999999999999999999999998
No 3
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-82 Score=690.89 Aligned_cols=726 Identities=30% Similarity=0.536 Sum_probs=638.2
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1219)
++|..|+.+|+++.|||..+|++++..+|.|+|||+++..+++.++-.+-||++..|-+..+++++|++|..|+||++.+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEecCCCCeEEEEEecCC-CEEEEEECCCeEE
Q 000936 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-RTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVR 160 (1219)
Q Consensus 83 ~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s-~~~i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~ 160 (1219)
++.+.++..|.++|++++.||..++++|+|+|-+|++|||+. ..+.+++.||.+.|++++|+|.. +.++++|.|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 999999999999999999999999999999999999999985 46888999999999999999966 7999999999999
Q ss_pred EEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCCe
Q 000936 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL--PLIVSGADDRQVKLWRMNETKA 238 (1219)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g--~~l~sg~~dg~I~iwd~~~~~~ 238 (1219)
||.+.... +.+++.+|..+|+|+.|-+.| ++|++|++|.+|++||..+..+
T Consensus 167 VWslgs~~---------------------------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C 219 (794)
T KOG0276|consen 167 VWSLGSPH---------------------------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC 219 (794)
T ss_pred EEEcCCCC---------------------------CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH
Confidence 99997633 355889999999999999855 7999999999999999999998
Q ss_pred eeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEe
Q 000936 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1219)
Q Consensus 239 ~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l 318 (1219)
+.++.||.++|+.+.|+|.-.++++||+||++|||+..+.+...++....+++|+++..+.++.+++|.|+|.++.++
T Consensus 220 --V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l 297 (794)
T KOG0276|consen 220 --VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL 297 (794)
T ss_pred --HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEc
Confidence 999999999999999999999999999999999999999888888888899999999999999999999999999999
Q ss_pred cCCcceEEecCCE-EEEEeCCeEEEEEecC---------CcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCC
Q 000936 319 ERERPAFAVSGDS-LFYAKDRFLRYYEFST---------QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDG 388 (1219)
Q Consensus 319 ~~~~~~~s~~~~~-l~~~~d~~i~v~d~~~---------~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~d 388 (1219)
.++.|+.+.+.+. ++.+..+.+.--++.+ |+.++ ++.+..|. . ...+..++.||+|+.+++++.
T Consensus 298 greeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~-LsvKeLgs-~-eiyPq~L~hsPNGrfV~Vcgd--- 371 (794)
T KOG0276|consen 298 GREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLP-LSVKELGS-V-EIYPQTLAHSPNGRFVVVCGD--- 371 (794)
T ss_pred cCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCcccc-chhhhccc-c-ccchHHhccCCCCcEEEEecC---
Confidence 9999999987765 6666666666555443 33332 33444444 2 346788999999998888776
Q ss_pred CEEEEEEecCCCCCCCccccccccCceeEEEEEeC-CeEEEEEcCCCEEEEEecCCceeEeeeCCcceEEEEEeCCCcEE
Q 000936 389 GSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIAR-NRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLL 467 (1219)
Q Consensus 389 g~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d-~~~l~~~~~dg~I~Iwdl~~~~~~~i~~~~~v~~l~~s~dg~~L 467 (1219)
|.+.||..-. ......+.....+|++| +.+++-.+ ++.|+++ -+.+..+++........ --.|.+|
T Consensus 372 GEyiIyTala--------~RnK~fG~~~eFvw~~dsne~avRes-~~~vki~-knfke~ksi~~~~~~e~---i~gg~Ll 438 (794)
T KOG0276|consen 372 GEYIIYTALA--------LRNKAFGSGLEFVWAADSNEFAVRES-NGNVKIF-KNFKEHKSIRPDMSAEG---IFGGPLL 438 (794)
T ss_pred ccEEEEEeee--------hhhcccccceeEEEcCCCCeEEEEec-CCceEEE-ecceeccccccccceee---ecCCceE
Confidence 8999998432 23456678889999999 56666655 7888888 44667777766543222 2235567
Q ss_pred -EEeCCeEEEEEcCCCeEEEEEecCCeeEEEEcCCCCEEEEEeCCeEEEEecCccceeeeee------------------
Q 000936 468 -CRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHE------------------ 528 (1219)
Q Consensus 468 -~s~d~~I~l~dl~~~~~l~~~~~~~v~~v~ws~dg~~la~~s~~~i~i~~~~l~~~~~~~e------------------ 528 (1219)
+.+++.+++||+.++++++.+.. ..+.+.|+.+|.++++++++.+||+..+.+.+....|
T Consensus 439 g~~ss~~~~fydW~~~~lVrrI~v-~~k~v~w~d~g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~eeGiedAfevLg 517 (794)
T KOG0276|consen 439 GVRSSDFLCFYDWESGELVRRIEV-TSKHVYWSDNGELVAIAGDDSFYILKFNADAVANAVEQGIEVTEEGIEDAFEVLG 517 (794)
T ss_pred EEEeCCeEEEEEcccceEEEEEee-ccceeEEecCCCEEEEEecCceeEEEecHHHHHHHHhcCCCCcchhHHHHHHHHh
Confidence 45789999999999999999987 3688999999999999999999988766444332111
Q ss_pred --eeEEeeeEEecCCeEEEEcCC-eeeEEecCCceeEEEeccccEEEEEE--eCCEEEEEecCCceEEEEeCchhHhHHH
Q 000936 529 --TIRVKSGAWDDNGVFIYTTLN-HIKYCLPNGDSGIIRTLDVPIYITKV--SGNTIFCLDRDGKNRAIVIDATEYIFKL 603 (1219)
Q Consensus 529 --~~~iks~~wd~~~~~iy~t~~-~iky~l~~g~~~~i~~~~~~~~l~~~--~~~~l~~l~~~~~~~~~~ld~~e~~f~~ 603 (1219)
+..++++.|.. ++|||+|.+ .+.| ++.|+.-.+..++.++|+++. .++++|+.|++..+....++...++|+.
T Consensus 518 E~sE~v~tg~Wvg-D~fiytts~nrlnY-~vgGe~~~v~h~~~~mylLgy~~~~~rvYL~Dke~nVi~y~l~l~vleyqt 595 (794)
T KOG0276|consen 518 EVSESVKTGKWVG-DCFIYTTSNNRLNY-LVGGETYTVAHLDRIMYLLGYVANDNRVYLHDKELNVISYKILLEVLEYQT 595 (794)
T ss_pred hhhhheeeceeee-eEEEEeecccceeE-EcCCceEEEEEeccchhheeeeecCCEEEEeecccceEeEeeehHHHHHHH
Confidence 45788999975 899999765 5555 579999999999999999985 6889999999999999999999999999
Q ss_pred HHhccCHHHHHHhhhcCccc-chhHHHHHHhCCChhhhhccccCcchhhhHHhhcCCHHHHHHHHHHhCChhHHHHHHHH
Q 000936 604 SLLRKRYDHVMSMIRNSQLC-GQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVE 682 (1219)
Q Consensus 604 ~l~~~~~~~a~~~i~~~~~~-~~~i~~~l~~~g~~e~Al~~~~d~~~rf~lal~~g~~~~A~~~a~~l~~~~~w~~La~~ 682 (1219)
++..++++.|...+.+.+.. ...++.||++.||.|.||++..|+.+||++|++.|+++.|.++|.+.+++..|++||+.
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDA 675 (794)
T ss_pred HhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHH
Confidence 99999999998877765533 35788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHHHHHHcCChhHHHHHHHhcCCHHHHHHHHHHcCCChHHHH
Q 000936 683 ALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYI 762 (1219)
Q Consensus 683 al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~~~~~~~~~~~~~~al~lgd~~eai~i~~~~g~~~~A~~ 762 (1219)
|+..|++..|.+||.+++|+.+|..||...||-+.|.++++.++..+....+|.++..+|+++++.++|.+.+|+++|-.
T Consensus 676 al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal 755 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQRLPEAAL 755 (794)
T ss_pred HhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHc
Q 000936 763 TASVHGLQDVAERLAAEL 780 (1219)
Q Consensus 763 la~~~g~~~~a~~l~~~~ 780 (1219)
+|++|.+ ++..++.+.+
T Consensus 756 ~ArtYlp-s~vs~iv~~w 772 (794)
T KOG0276|consen 756 FARTYLP-SQVSRIVELW 772 (794)
T ss_pred HHhhhCh-HHHHHHHHHH
Confidence 9999998 5555565544
No 4
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=100.00 E-value=3.7e-59 Score=538.47 Aligned_cols=413 Identities=41% Similarity=0.676 Sum_probs=323.4
Q ss_pred CeEEEEEecCC-----cceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCcccccccc
Q 000936 338 RFLRYYEFSTQ-----KDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKK 412 (1219)
Q Consensus 338 ~~i~v~d~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~ 412 (1219)
+.|+.+|+.+. ......+.+..+. . +..+++++++|+|+.++|+++ |.+.||.... ......
T Consensus 2 ~~i~~~~~~~~~~~~dg~~~~l~~k~lg~-~-~~~p~~ls~npngr~v~V~g~---geY~iyt~~~--------~r~k~~ 68 (443)
T PF04053_consen 2 NEIRTANLKNISEIKDGERLPLSVKELGS-C-EIYPQSLSHNPNGRFVLVCGD---GEYEIYTALA--------WRNKAF 68 (443)
T ss_dssp TEEEEEE--S-----TTS-B----EEEEE---SS--SEEEE-TTSSEEEEEET---TEEEEEETTT--------TEEEEE
T ss_pred CceEEEECcCCCccCCCceeeEEeccCCC-C-CcCCeeEEECCCCCEEEEEcC---CEEEEEEccC--------Cccccc
Confidence 35666666654 2223344444443 2 447899999999999999666 8999998322 234556
Q ss_pred CceeEEEEEeCCeEEEEEcCCCEEEE-EecCCceeEeeeCCcceEEEEEeCCCcEEEE-eCCeEEEEEcCCCeEEEEEec
Q 000936 413 GLGGSAIFIARNRFAVLDKSSNQVLV-KNLKNEVVKKSILPIAADAIFYAGTGNLLCR-AEDRVVIFDLQQRLVLGDLQT 490 (1219)
Q Consensus 413 ~~i~~~~fs~d~~~l~~~~~dg~I~I-wdl~~~~~~~i~~~~~v~~l~~s~dg~~L~s-~d~~I~l~dl~~~~~l~~~~~ 490 (1219)
+....++|+++++|++..+ +++|.| .++++...+.++.+..+..|+. |.+|.. +++.|.+||+++++.++++..
T Consensus 69 G~g~~~vw~~~n~yAv~~~-~~~I~I~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v 144 (443)
T PF04053_consen 69 GSGLSFVWSSRNRYAVLES-SSTIKIYKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDV 144 (443)
T ss_dssp EE-SEEEE-TSSEEEEE-T-TS-EEEEETTEE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS
T ss_pred CceeEEEEecCccEEEEEC-CCeEEEEEcCccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEec
Confidence 7888999999999999888 788999 5777777778888877888888 777755 577899999999999999999
Q ss_pred CCeeEEEEcCCCCEEEEEeCCeEEEEecCcc------------ceeeeee-eeEEeeeEEecCCeEEEEcCCeeeEEecC
Q 000936 491 PFVKYVVWSNDMESVALLSKHAIIIASKKLV------------HQCTLHE-TIRVKSGAWDDNGVFIYTTLNHIKYCLPN 557 (1219)
Q Consensus 491 ~~v~~v~ws~dg~~la~~s~~~i~i~~~~l~------------~~~~~~e-~~~iks~~wd~~~~~iy~t~~~iky~l~~ 557 (1219)
.+|+.|.||++|+++|+.+++.++|++++++ ..+.++| +.+|||++|+++ +|+|+|.+|++| +++
T Consensus 145 ~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~~lkY-l~~ 222 (443)
T PF04053_consen 145 SAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSNHLKY-LVN 222 (443)
T ss_dssp -E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TTEEEE-EET
T ss_pred CCCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCCeEEE-EEc
Confidence 8899999999999999999999999999999 9999999 999999999866 999999999999 789
Q ss_pred CceeEEEeccccEEEEEEeC--CEEEEEecCCceEEEEeCchhHhHHHHHhccCHHHHHHhhhcCccc-------chhHH
Q 000936 558 GDSGIIRTLDVPIYITKVSG--NTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLC-------GQAMI 628 (1219)
Q Consensus 558 g~~~~i~~~~~~~~l~~~~~--~~l~~l~~~~~~~~~~ld~~e~~f~~~l~~~~~~~a~~~i~~~~~~-------~~~i~ 628 (1219)
|+.|+|++++.++|++++.+ +++|++||++.+..+.|++++++|++++.+++++.++++++.+++. |++++
T Consensus 223 Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~ 302 (443)
T PF04053_consen 223 GETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIA 302 (443)
T ss_dssp TEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHH
T ss_pred CCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHH
Confidence 99999999999999999988 9999999999999999999999999999999999999999977777 99999
Q ss_pred HHHHhCCChhhhhccccCcchhhhHHhhcCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhhHH
Q 000936 629 AYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFL 708 (1219)
Q Consensus 629 ~~l~~~g~~e~Al~~~~d~~~rf~lal~~g~~~~A~~~a~~l~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l 708 (1219)
+||+++||+|+||++++|+.+||+||+++||++.|+++|++++++..|++||+.|+.+|++++||+||++++|+++|.+|
T Consensus 303 ~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lL 382 (443)
T PF04053_consen 303 RFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLL 382 (443)
T ss_dssp HHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCChhHHHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCC
Q 000936 709 YLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGL 769 (1219)
Q Consensus 709 ~~~~g~~~~l~kl~~~~~~~~~~~~~~~~al~lgd~~eai~i~~~~g~~~~A~~la~~~g~ 769 (1219)
|..+||.++|++|+++++.+++.+.++++++++||+++++++|.++|++++|+.+|++||+
T Consensus 383 y~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 383 YSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFARTYGP 443 (443)
T ss_dssp HHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT-
T ss_pred HHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-46 Score=388.88 Aligned_cols=329 Identities=26% Similarity=0.411 Sum_probs=292.6
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1219)
..+.||...|.|+.|+|+|..|++|+.|.++++||+.+.++..+.++|...|.|++|+|||+.||+|+.||+|++||.++
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CeEE-EEEccCCCCEEEEEEcC-----CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECC
Q 000936 83 HRCL-FTLLGHLDYIRTVQFHH-----EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD 156 (1219)
Q Consensus 83 ~~~~-~~l~~h~~~I~~l~fs~-----d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d 156 (1219)
|+++ ..+.+|...|++++|.| ..++|++++.||+|+|||+..++++..+.+|+.+|+|+.|--+ .++++||.|
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~D 267 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQD 267 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCC
Confidence 8765 56899999999999976 4569999999999999999999999999999999999999744 599999999
Q ss_pred CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEc-----------CCC---------
Q 000936 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH-----------PTL--------- 216 (1219)
Q Consensus 157 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-----------p~g--------- 216 (1219)
++|++|+...++. ...+.+|...|+.++.+ |.+
T Consensus 268 rtIkvw~a~dG~~---------------------------~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~ 320 (480)
T KOG0271|consen 268 RTIKVWRALDGKL---------------------------CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE 320 (480)
T ss_pred ceEEEEEccchhH---------------------------HHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence 9999999876443 33677888888887766 323
Q ss_pred ----------------CEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000936 217 ----------------PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1219)
Q Consensus 217 ----------------~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~ 280 (1219)
..+++|++|.++.+|+....+. ++..+.+|..-|..+.||||+++++++|.|++|++|+..+|
T Consensus 321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk-pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG 399 (480)
T KOG0271|consen 321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK-PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG 399 (480)
T ss_pred HHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc-chhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc
Confidence 3599999999999999876553 37788999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCC
Q 000936 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360 (1219)
Q Consensus 281 ~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 360 (1219)
+.+.+|++|-..|+.++|+.|.+++++|+ .|.++++|++.+.+. ...+ +|
T Consensus 400 k~lasfRGHv~~VYqvawsaDsRLlVS~S--------------------------kDsTLKvw~V~tkKl--~~DL--pG 449 (480)
T KOG0271|consen 400 KFLASFRGHVAAVYQVAWSADSRLLVSGS--------------------------KDSTLKVWDVRTKKL--KQDL--PG 449 (480)
T ss_pred chhhhhhhccceeEEEEeccCccEEEEcC--------------------------CCceEEEEEeeeeee--cccC--CC
Confidence 99999999999999999999999999998 588999999998665 2333 34
Q ss_pred CCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEE
Q 000936 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1219)
Q Consensus 361 ~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~ 395 (1219)
|.+ .|.++.|+|||..+ +++..|..+++|.
T Consensus 450 h~D---EVf~vDwspDG~rV--~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 450 HAD---EVFAVDWSPDGQRV--ASGGKDKVLRLWR 479 (480)
T ss_pred CCc---eEEEEEecCCCcee--ecCCCceEEEeec
Confidence 433 99999999999954 6666788888885
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.6e-42 Score=372.76 Aligned_cols=476 Identities=16% Similarity=0.280 Sum_probs=382.2
Q ss_pred eecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeE--EEEecccCCCEEEEEEecCCCEEEEEEC--C--CeEEE
Q 000936 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL--IDRFDEHDGPVRGVHFHKSQPLFVSGGD--D--YKIKV 77 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~--i~~l~~h~~~V~~l~fsp~~~~Lasgs~--D--g~I~v 77 (1219)
.+..|+..++-..|||.|-|+|+|...|+|+|||....+. ..+++.-.++|..|+|++++++++..|+ + |.+.+
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~ 133 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL 133 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence 4678999999999999999999999999999999765332 3466778999999999999999888764 3 44555
Q ss_pred EEcCCCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECC
Q 000936 78 WNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD 156 (1219)
Q Consensus 78 Wd~~~~~~~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d 156 (1219)
|| +|..+..+.||...|.++.|-|..+ ++++|++|++|.+|+-.--+...++..|...|.|+.|+|||..+++++.|
T Consensus 134 ~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD 211 (603)
T KOG0318|consen 134 WD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD 211 (603)
T ss_pred ec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC
Confidence 55 7888999999999999999999988 79999999999999977777888889999999999999999999999999
Q ss_pred CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000936 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236 (1219)
Q Consensus 157 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~ 236 (1219)
|+|.+||-.++++..... .-.+|.+.|.+++|+||+..+++++.|.+++|||+.+.
T Consensus 212 gki~iyDGktge~vg~l~------------------------~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 212 GKIYIYDGKTGEKVGELE------------------------DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN 267 (603)
T ss_pred ccEEEEcCCCccEEEEec------------------------CCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc
Confidence 999999988866543211 13489999999999999999999999999999998776
Q ss_pred Ceee-----------------------------------------EEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000936 237 KAWE-----------------------------------------VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVW 275 (1219)
Q Consensus 237 ~~~~-----------------------------------------~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iw 275 (1219)
+... ...+.+|..+|+++..+|++++|++|+.||.|.-|
T Consensus 268 slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 268 SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence 4311 12336899999999999999999999999999999
Q ss_pred eCCCCeeEEEE-ecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCc-------------ceEE--ecCCEEEEEeCCe
Q 000936 276 DVTKRTGVQTF-RREHDRFWILASHPEMNLLAAGHDSGMIVFKLERER-------------PAFA--VSGDSLFYAKDRF 339 (1219)
Q Consensus 276 dl~~~~~~~~~-~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~-------------~~~s--~~~~~l~~~~d~~ 339 (1219)
+..++..-... +.|...|.+++.+..+.++.+|.|+.+.+..+.... ..++ .++..++++..+.
T Consensus 348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence 99988765444 568889999999999999999999999888653321 1222 2333555555555
Q ss_pred EEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEE
Q 000936 340 LRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAI 419 (1219)
Q Consensus 340 i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 419 (1219)
|.+..-.++-. ...+ ...+.+++++|+++.+++. .+|+.+++|.+.+....... ....|.+.++.++
T Consensus 428 iv~l~~~~~~~--~~~~--------~y~~s~vAv~~~~~~vaVG--G~Dgkvhvysl~g~~l~ee~-~~~~h~a~iT~va 494 (603)
T KOG0318|consen 428 IVLLQDQTKVS--SIPI--------GYESSAVAVSPDGSEVAVG--GQDGKVHVYSLSGDELKEEA-KLLEHRAAITDVA 494 (603)
T ss_pred EEEEecCCcce--eecc--------ccccceEEEcCCCCEEEEe--cccceEEEEEecCCccccee-eeecccCCceEEE
Confidence 55554222111 1111 1277889999999977664 35789999999986543222 4678999999999
Q ss_pred EEeCCeEEEEEcCCCEEEEEecCCceeE--eeeCCc-ceEEEEEeCCCcEEEEe--CCeEEEEEcCCCeEEEEEec---C
Q 000936 420 FIARNRFAVLDKSSNQVLVKNLKNEVVK--KSILPI-AADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT---P 491 (1219)
Q Consensus 420 fs~d~~~l~~~~~dg~I~Iwdl~~~~~~--~i~~~~-~v~~l~~s~dg~~L~s~--d~~I~l~dl~~~~~l~~~~~---~ 491 (1219)
||||+.|++.+...+.+.+||+.....+ ....|. +|.+++|+|+.++++++ |..|.||++..-...-.+.. .
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~ 574 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLG 574 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccccc
Confidence 9999999999999999999999954433 333344 99999999999999997 89999999987544333333 4
Q ss_pred CeeEEEEcCCCCEEEEEeCCeEEEEec
Q 000936 492 FVKYVVWSNDMESVALLSKHAIIIASK 518 (1219)
Q Consensus 492 ~v~~v~ws~dg~~la~~s~~~i~i~~~ 518 (1219)
.|..+.|-.+...+.++.+-.|-+|+.
T Consensus 575 gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 575 GVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred CceeEEEecCceEEeccCcceeEEecc
Confidence 599999998888777777777878874
No 7
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-41 Score=382.78 Aligned_cols=656 Identities=19% Similarity=0.281 Sum_probs=459.1
Q ss_pred CcceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 000936 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 1 ml~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1219)
+|.+|..|.++|.+++|||+++++++|+.|-.|+||++++.+++.++.+|-+-|+.+.||+.-++++|+|+|.+|+|||+
T Consensus 43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw 122 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW 122 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEec
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC--------C---------------------eEEEEE
Q 000936 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS--------R---------------------TCISVL 131 (1219)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s--------~---------------------~~i~~~ 131 (1219)
.+++++..++||..+|.|..|+|....++|+|-|.+|||||+.. + -....+
T Consensus 123 qsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 123 QSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred cCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 99999999999999999999999999999999999999999852 1 112456
Q ss_pred ecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEE
Q 000936 132 TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211 (1219)
Q Consensus 132 ~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 211 (1219)
.||...|+-++|+|.-.++++|+.|+.|++|.++..+.-. .-+..+|...|.++-
T Consensus 203 EGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE-------------------------vDtcrgH~nnVssvl 257 (1202)
T KOG0292|consen 203 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE-------------------------VDTCRGHYNNVSSVL 257 (1202)
T ss_pred cccccccceEEecCCcceEEecCCcceeeEEEecccccee-------------------------ehhhhcccCCcceEE
Confidence 7999999999999999999999999999999987633221 225679999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC
Q 000936 212 FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291 (1219)
Q Consensus 212 ~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~ 291 (1219)
|||..+++++.++|++|++||+...+. +.+++...+..+.++-+|..+++++|... -+.||.+....+...+.
T Consensus 258 fhp~q~lIlSnsEDksirVwDm~kRt~--v~tfrrendRFW~laahP~lNLfAAgHDs-Gm~VFkleRErpa~~v~---- 330 (1202)
T KOG0292|consen 258 FHPHQDLILSNSEDKSIRVWDMTKRTS--VQTFRRENDRFWILAAHPELNLFAAGHDS-GMIVFKLERERPAYAVN---- 330 (1202)
T ss_pred ecCccceeEecCCCccEEEEecccccc--eeeeeccCCeEEEEEecCCcceeeeecCC-ceEEEEEcccCceEEEc----
Confidence 999999999999999999999998887 88888888899999999999988877644 47777766433322111
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeeEEEecC-----------Cc--------ceEEecCCEEEEE---eCCeEEEEEecCCc
Q 000936 292 RFWILASHPEMNLLAAGHDSGMIVFKLER-----------ER--------PAFAVSGDSLFYA---KDRFLRYYEFSTQK 349 (1219)
Q Consensus 292 ~i~~l~~sp~~~~la~g~d~gi~v~~l~~-----------~~--------~~~s~~~~~l~~~---~d~~i~v~d~~~~~ 349 (1219)
++.+....+..+..+++.+ .. ..+.+..+.+..+ .++...++.+....
T Consensus 331 ----------~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~ 400 (1202)
T KOG0292|consen 331 ----------GNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDS 400 (1202)
T ss_pred ----------CCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcc
Confidence 1111111122222222222 11 1222223333333 33444444443321
Q ss_pred cee---eEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeE
Q 000936 350 DTQ---VIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRF 426 (1219)
Q Consensus 350 ~~~---~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~ 426 (1219)
... ....+.. ....+-...+ + +++... .+..+.+-++....+..+. .. ..+..+-+...|.+
T Consensus 401 ~~~~~~~~~~k~t-------G~~a~fvarN-r-favl~k-~~~~v~ik~l~N~vtkkl~--~~---~~~~~IF~ag~g~l 465 (1202)
T KOG0292|consen 401 DGVSDGKDVKKGT-------GEGALFVARN-R-FAVLDK-SNEQVVIKNLKNKVTKKLL--LP---ESTDDIFYAGTGNL 465 (1202)
T ss_pred cccCCchhhhcCC-------CCceEEEEec-c-eEEEEe-cCcceEEecccchhhhccc--Cc---ccccceeeccCccE
Confidence 100 0011111 1122222221 1 222222 1223434344333222221 11 12334556666777
Q ss_pred EEEEcCCCEEEEEecC-CceeEeeeCCcceEEEEEeCCCcEEEE-eCCeEEEEEcCCCeEEEEEec-CCeeEEEEcCCCC
Q 000936 427 AVLDKSSNQVLVKNLK-NEVVKKSILPIAADAIFYAGTGNLLCR-AEDRVVIFDLQQRLVLGDLQT-PFVKYVVWSNDME 503 (1219)
Q Consensus 427 l~~~~~dg~I~Iwdl~-~~~~~~i~~~~~v~~l~~s~dg~~L~s-~d~~I~l~dl~~~~~l~~~~~-~~v~~v~ws~dg~ 503 (1219)
++... ..|.++|++ ...+..++.. .+.-+.||+|+..++. +..+|.|+|..- +.+.++.. -.|++-+|..||-
T Consensus 466 ll~~~--~~v~lfdvQq~~~~~si~~s-~vkyvvws~dm~~vAll~Kh~i~i~~kkL-~l~~sihEtiriksgawde~gV 541 (1202)
T KOG0292|consen 466 LLRSP--DSVTLFDVQQKKKVGSIKVS-KVKYVVWSNDMSRVALLSKHTITIADKKL-ELLCSIHETIRIKSGAWDEDGV 541 (1202)
T ss_pred EEEcC--CeEEEEEeecceEEEEEecC-ceeEEEEcCccchhhhcccceEEEEecch-hheecchheeEeeeceeccCce
Confidence 66654 789999999 4555566554 8899999999888854 788999998632 34444433 5789999999999
Q ss_pred EEEEEeCCeEE-EEecCccceeeeeeeeEEeeeEEecCCeEEEEcCCeeeEEecCCceeEEEeccccEEEEEE-------
Q 000936 504 SVALLSKHAII-IASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKV------- 575 (1219)
Q Consensus 504 ~la~~s~~~i~-i~~~~l~~~~~~~e~~~iks~~wd~~~~~iy~t~~~iky~l~~g~~~~i~~~~~~~~l~~~------- 575 (1219)
++.+...|--| +-+.+...+.++.-++. +..-.....|||.+......-+++.+-|.++.
T Consensus 542 fiYtT~nHikYal~~GD~GIikTLd~~iy------------itkv~gn~V~cl~rd~~~~~~~IDptEy~FKlALi~k~y 609 (1202)
T KOG0292|consen 542 FIYTTLNHIKYALENGDSGIIKTLDKPIY------------ITKVKGNKVFCLNRDGEIECLTIDPTEYRFKLALLNKKY 609 (1202)
T ss_pred EEEEehhhhhhhhccCCcceEEecccceE------------EEEeeCCEEEEEecCCCeEEEeechHHHHHHHHHHhhhh
Confidence 88887776544 55666666666654433 33333344466655444444455544433321
Q ss_pred -------eCCE------EEEEecCCceE--EEEeCchhHhHHHHHhccCHHHHHHhhhcCcccchhHHHHHHhCCChhhh
Q 000936 576 -------SGNT------IFCLDRDGKNR--AIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVA 640 (1219)
Q Consensus 576 -------~~~~------l~~l~~~~~~~--~~~ld~~e~~f~~~l~~~~~~~a~~~i~~~~~~~~~i~~~l~~~g~~e~A 640 (1219)
++.. +-++...|.+. -..+.....+|.++|..||++.|+...+... ....|.-|.
T Consensus 610 deVl~lI~ns~LvGqaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkld--d~d~w~rLg-------- 679 (1202)
T KOG0292|consen 610 DEVLHLIKNSNLVGQAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLD--DKDVWERLG-------- 679 (1202)
T ss_pred HHHHHHHHhcCcccHHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcC--cHHHHHHHH--------
Confidence 1111 11233344333 2345667789999999999999999988844 366777665
Q ss_pred hccccCcchhhhHHhhcCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhh---cCcchhhHHHHhcCCHHH
Q 000936 641 LHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRT---KNFERLSFLYLITGNMDK 717 (1219)
Q Consensus 641 l~~~~d~~~rf~lal~~g~~~~A~~~a~~l~~~~~w~~La~~al~~g~~~~Ae~~y~~~---~d~~~l~~l~~~~g~~~~ 717 (1219)
+-|+..||-+.|..++..+++ |++|.-.++-.||.+.-.+....+ +|.-....-.+.+|+.++
T Consensus 680 -----------e~Al~qgn~~IaEm~yQ~~kn---fekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~dv~e 745 (1202)
T KOG0292|consen 680 -----------EEALRQGNHQIAEMCYQRTKN---FEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGDVKE 745 (1202)
T ss_pred -----------HHHHHhcchHHHHHHHHHhhh---hhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhccHHH
Confidence 448889999999999888774 999999999999999877766544 566666666667888887
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhcCCHHHHHHHHHHcCC
Q 000936 718 LSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGH 756 (1219)
Q Consensus 718 l~kl~~~~~~~~~~~~~~~~al~lgd~~eai~i~~~~g~ 756 (1219)
-.++.+ .-+....++..+.-.|.=++|+++..+++.
T Consensus 746 rvkIl~---n~g~~~laylta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 746 RVKILE---NGGQLPLAYLTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHH---hcCcccHHHHHHhhcCcHHHHHHHHHhhcc
Confidence 666555 567777788888889998898888887764
No 8
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-40 Score=371.85 Aligned_cols=480 Identities=16% Similarity=0.274 Sum_probs=391.3
Q ss_pred cCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecc-cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE
Q 000936 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL 86 (1219)
Q Consensus 8 h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~-h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~ 86 (1219)
-...+++++.+||+.+|++++..+.+++|++.+|+.++.++. |++||..++|+|.+.++++||.|+.++|||+..+.+.
T Consensus 61 d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 61 DEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred chhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 356789999999999999999999999999999999999987 9999999999999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEEcCCCC--EEEEEECCCeEEEEECCCCe-EEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEE
Q 000936 87 FTLLGHLDYIRTVQFHHEYP--WIVSASDDQTIRIWNWQSRT-CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163 (1219)
Q Consensus 87 ~~l~~h~~~I~~l~fs~d~~--~l~s~s~Dg~I~iwd~~s~~-~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd 163 (1219)
+.|.||.+.|.++.|+|+.. .|++|..|+++++||+++.. ++.++..|.+.|+++.|.+++..+++++.|..+.+||
T Consensus 141 h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd 220 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWD 220 (775)
T ss_pred EEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEee
Confidence 99999999999999999876 58899999999999999544 5788899999999999999999999999999999999
Q ss_pred CCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCCe
Q 000936 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-----LPLIVSGADDRQVKLWRMNETKA 238 (1219)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~-----g~~l~sg~~dg~I~iwd~~~~~~ 238 (1219)
+...+.....| -...+.++.+-++ |.++++.+.+|.+++||..+++.
T Consensus 221 ~~~~~~l~~lp----------------------------~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~ 272 (775)
T KOG0319|consen 221 LVQYKKLKTLP----------------------------LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKC 272 (775)
T ss_pred hhhhhhhheec----------------------------hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchh
Confidence 96655443222 1223334444444 67999999999999999998876
Q ss_pred eeEEeecCC-CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEE-eCCCCEEEEEeCC-CeeE
Q 000936 239 WEVDTLRGH-MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILAS-HPEMNLLAAGHDS-GMIV 315 (1219)
Q Consensus 239 ~~~~~~~~h-~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~-sp~~~~la~g~d~-gi~v 315 (1219)
+...+.. ...+..+...+....++..+.|..+.++|..+.+....+.+.++.|..+.+ .|+.++++++++. .+.+
T Consensus 273 --~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 273 --VYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRL 350 (775)
T ss_pred --hhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEE
Confidence 3222221 233666666666666777777889999999999999999999999999886 4677788877654 4667
Q ss_pred EEecCCcc---------eEE----ecCCEEEEE-eCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEE
Q 000936 316 FKLERERP---------AFA----VSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVL 381 (1219)
Q Consensus 316 ~~l~~~~~---------~~s----~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ll 381 (1219)
+.+..... ..+ .+|..++++ +|+++++|.++++.......-...+| ...|.+++++..+..++
T Consensus 351 y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH---~~svgava~~~~~asff 427 (775)
T KOG0319|consen 351 YTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH---TNSVGAVAGSKLGASFF 427 (775)
T ss_pred EecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccc---ccccceeeecccCccEE
Confidence 76655433 222 234567777 99999999996544433333334455 33999999988887776
Q ss_pred EEEeCCCCEEEEEEecCCCCCC--Cc----cccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC-CceeEeeeCCc-
Q 000936 382 ICSDVDGGSYELYVIPKDSIGR--GD----SVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPI- 453 (1219)
Q Consensus 382 v~~~~~dg~i~l~~~~~~~~~~--~~----~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~i~~~~- 453 (1219)
+..+ .|+++++|.++...... .. .....|...|.+++.+|+.+++++++.|.+.+||+++ .....++.+|.
T Consensus 428 vsvS-~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R 506 (775)
T KOG0319|consen 428 VSVS-QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR 506 (775)
T ss_pred EEec-CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc
Confidence 6655 67899999998732111 11 1345788899999999999999999999999999999 77888999999
Q ss_pred ceEEEEEeCCCcEEEE--eCCeEEEEEcCCCeEEEEEec--CCeeEEEEcCCCCEEEEEeCCeE-EEEecCcc
Q 000936 454 AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMESVALLSKHAI-IIASKKLV 521 (1219)
Q Consensus 454 ~v~~l~~s~dg~~L~s--~d~~I~l~dl~~~~~l~~~~~--~~v~~v~ws~dg~~la~~s~~~i-~i~~~~l~ 521 (1219)
.|.++.|++..+++++ +|.+|+||.+++..++.++.+ ..|..+.|-.+|+.+++++.+++ -+|+.+..
T Consensus 507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 507 GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 9999999999999976 599999999999999999997 67899999999988888888774 59986543
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-42 Score=363.50 Aligned_cols=330 Identities=20% Similarity=0.331 Sum_probs=291.7
Q ss_pred EEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000936 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122 (1219)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~ 122 (1219)
+-..+.+|.++|.|+.|+|+|..|++|+.|.++++||+.+..+.++.++|...|.|++|+|||++|++|+.||+|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEE-EEEecCCCCeEEEEEec-----CCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceE
Q 000936 123 QSRTCI-SVLTGHNHYVMCASFHP-----KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (1219)
Q Consensus 123 ~s~~~i-~~~~~h~~~V~~l~~sp-----~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1219)
.+|+++ ..+.+|...|++++|.| ..+++++++.||.|+|||+..+. +
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~---------------------------~ 239 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT---------------------------C 239 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce---------------------------E
Confidence 988775 57899999999999986 45799999999999999987633 5
Q ss_pred EEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEc-----------cCC-----
Q 000936 197 KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH-----------AKQ----- 260 (1219)
Q Consensus 197 ~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~s-----------p~g----- 260 (1219)
...+.+|..+|+|+.|-.+| +|++|+.|++|++|+...+.. ...+++|...|+.++.+ |.+
T Consensus 240 ~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~--~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKL--CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred EEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhH--HHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 66889999999999998775 899999999999999999887 88999999999999887 223
Q ss_pred --------------------CEEEEEeCCCcEEEEeCCCC-eeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEec
Q 000936 261 --------------------DIIVSNSEDKSIRVWDVTKR-TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLE 319 (1219)
Q Consensus 261 --------------------~~L~s~s~dg~I~iwdl~~~-~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~ 319 (1219)
+.|++|+.|.++.+|+-... +++....+|..-|..+.||||++++|+++
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS---------- 386 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS---------- 386 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee----------
Confidence 35999999999999996644 47778889999999999999999999998
Q ss_pred CCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCC
Q 000936 320 RERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (1219)
Q Consensus 320 ~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~ 399 (1219)
-|+.|++|+-.+|+.+. +++. | -..|..++|+.|.+ ++++++.|.++++|++...
T Consensus 387 ----------------FDkSVkLW~g~tGk~la--sfRG--H---v~~VYqvawsaDsR--LlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 387 ----------------FDKSVKLWDGRTGKFLA--SFRG--H---VAAVYQVAWSADSR--LLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred ----------------cccceeeeeCCCcchhh--hhhh--c---cceeEEEEeccCcc--EEEEcCCCceEEEEEeeee
Confidence 48899999999998744 3443 3 23999999999988 4455667899999999875
Q ss_pred CCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEe
Q 000936 400 SIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKN 440 (1219)
Q Consensus 400 ~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwd 440 (1219)
.. ...+.+|.+.|.++.|+|||..+++++.|..+++|.
T Consensus 442 Kl---~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 442 KL---KQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ee---cccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 43 335789999999999999999999999999999994
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-39 Score=365.22 Aligned_cols=447 Identities=15% Similarity=0.254 Sum_probs=375.7
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEECCCC--------eEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 000936 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG--------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g--------~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1219)
..+|.|+.|||+|+++|+|. .+.++||..... .+.+++.+|...|+++.|+.|.++|++|+.|.++++|++
T Consensus 96 k~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v 174 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGV 174 (893)
T ss_pred cCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEe
Confidence 46799999999999999885 678999986532 345677799999999999999999999999999999999
Q ss_pred CCCeE--EEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC-----------------------CeE-----E--
Q 000936 81 KMHRC--LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-----------------------RTC-----I-- 128 (1219)
Q Consensus 81 ~~~~~--~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s-----------------------~~~-----i-- 128 (1219)
+..+- .+.+.+|.++|....|..+...+++.+.||.+.+|.... ++. .
T Consensus 175 ~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~ 254 (893)
T KOG0291|consen 175 DGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWY 254 (893)
T ss_pred ccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEE
Confidence 86665 567789999999999999999999999999999997651 111 1
Q ss_pred ----EEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecC
Q 000936 129 ----SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD 204 (1219)
Q Consensus 129 ----~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1219)
.-+......|++.+||+..+.|++|-..|...+|++.... +.+.+.-..
T Consensus 255 k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~---------------------------lih~LSis~ 307 (893)
T KOG0291|consen 255 KTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFN---------------------------LIHSLSISD 307 (893)
T ss_pred EEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCce---------------------------EEEEeeccc
Confidence 1112233779999999999999999999999999987633 445666667
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeE
Q 000936 205 RGVNWAAFHPTLPLIVSGADD-RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGV 283 (1219)
Q Consensus 205 ~~V~~l~~sp~g~~l~sg~~d-g~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~ 283 (1219)
.+|..++|+..|.+|+.|+.. |++-+|+..+... +....+|...+++++++|||+++++|++||.|+|||..++-+.
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence 889999999999999998865 8999999998876 8888999999999999999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCC
Q 000936 284 QTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTS 363 (1219)
Q Consensus 284 ~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 363 (1219)
.+|..|...++.+.|+..++.+.+.+ -||+|+.||+...+....++.+.+.
T Consensus 386 vTFteHts~Vt~v~f~~~g~~llssS--------------------------LDGtVRAwDlkRYrNfRTft~P~p~--- 436 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTARGNVLLSSS--------------------------LDGTVRAWDLKRYRNFRTFTSPEPI--- 436 (893)
T ss_pred EEeccCCCceEEEEEEecCCEEEEee--------------------------cCCeEEeeeecccceeeeecCCCce---
Confidence 99999999999999999999888877 4889999999988776655554321
Q ss_pred CCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC-
Q 000936 364 LNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK- 442 (1219)
Q Consensus 364 ~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~- 442 (1219)
...+++..|.|..+. +++.+.-.|.+|++.. |+++..+.+|.++|.+++|+|.+..|++++.|.+|++||+-
T Consensus 437 ---QfscvavD~sGelV~-AG~~d~F~IfvWS~qT---GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 437 ---QFSCVAVDPSGELVC-AGAQDSFEIFVWSVQT---GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred ---eeeEEEEcCCCCEEE-eeccceEEEEEEEeec---CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence 556788888888433 3333555788898875 66666789999999999999999999999999999999997
Q ss_pred -CceeEeeeCCcceEEEEEeCCCcEEEE--eCCeEEEEEcCCCeEEEEEec----------------------CCeeEEE
Q 000936 443 -NEVVKKSILPIAADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT----------------------PFVKYVV 497 (1219)
Q Consensus 443 -~~~~~~i~~~~~v~~l~~s~dg~~L~s--~d~~I~l~dl~~~~~l~~~~~----------------------~~v~~v~ 497 (1219)
.....++.....+..+.|.|+|+-|+. -||.|.+||+..+..+..+.+ ...+.++
T Consensus 510 s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ 589 (893)
T KOG0291|consen 510 SSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTIC 589 (893)
T ss_pred cCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEE
Confidence 447888888889999999999999965 499999999988877755543 4578999
Q ss_pred EcCCCCEEEEEeCC-eEEEEecCcc
Q 000936 498 WSNDMESVALLSKH-AIIIASKKLV 521 (1219)
Q Consensus 498 ws~dg~~la~~s~~-~i~i~~~~l~ 521 (1219)
+|+||..+.+++.. .|.|++....
T Consensus 590 ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 590 YSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred EcCCCCEEEecCCcccEEEEECchh
Confidence 99999998877774 4777775543
No 11
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-39 Score=359.80 Aligned_cols=635 Identities=20% Similarity=0.327 Sum_probs=428.1
Q ss_pred CcceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 000936 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 1 ml~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1219)
|+++|+-..-+|.+..|-+..+|+++|+.|..|+||++.+++.++.|+.|..-|++++.||..++++|+++|-+|++||+
T Consensus 47 mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w 126 (794)
T KOG0276|consen 47 MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW 126 (794)
T ss_pred eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeec
Confidence 67888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CeEEEEEccCCCCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCC--CEEEEEECC
Q 000936 81 KM-HRCLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE--DLVVSASLD 156 (1219)
Q Consensus 81 ~~-~~~~~~l~~h~~~I~~l~fs~d~-~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~--~~l~s~s~d 156 (1219)
+. ..+.+++.||...|.+++|+|.. +.++|+|-|++|+||.+.+..+..++.+|...|.|+.+.+.| .++++|+.|
T Consensus 127 e~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 127 ENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred cCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence 75 47889999999999999999954 599999999999999999999999999999999999999866 699999999
Q ss_pred CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000936 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236 (1219)
Q Consensus 157 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~ 236 (1219)
.+|+|||..+... ..+++||...|+.+.|+|.-+++++|++||+++||+..+-
T Consensus 207 ~tiKvWDyQtk~C---------------------------V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 207 LTIKVWDYQTKSC---------------------------VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred ceEEEeecchHHH---------------------------HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 9999999988543 3478999999999999999999999999999999998887
Q ss_pred CeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEE-----EeC-
Q 000936 237 KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAA-----GHD- 310 (1219)
Q Consensus 237 ~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~-----g~d- 310 (1219)
+. ..++.-.-..++|++-.+.+..+++|..+|.|. ..+....+...+.....-+| +..+....+ |..
T Consensus 260 ~l--E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP~vsMd~~gKIiw----a~~~ei~~~~~ks~~~~~ 332 (794)
T KOG0276|consen 260 KL--EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEPAVSMDSNGKIIW----AVHSEIQAVNLKSVGAQK 332 (794)
T ss_pred eh--hhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCCceeecCCccEEE----EcCceeeeeeceeccCcc
Confidence 75 556666678899999999888899998888654 45555555544443322222 222221111 111
Q ss_pred ----CCee--------EEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCC
Q 000936 311 ----SGMI--------VFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTEN 378 (1219)
Q Consensus 311 ----~gi~--------v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 378 (1219)
+... -.++.......+++|..++++.||...+|..-.-+. + ..+.-....|++|.+
T Consensus 333 ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~Rn------K------~fG~~~eFvw~~dsn 400 (794)
T KOG0276|consen 333 EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRN------K------AFGSGLEFVWAADSN 400 (794)
T ss_pred cccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhh------c------ccccceeEEEcCCCC
Confidence 0000 011112223667788888888888888886432111 1 133566789999966
Q ss_pred EEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC-CceeEeeeCCcceEE
Q 000936 379 AVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPIAADA 457 (1219)
Q Consensus 379 ~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~i~~~~~v~~ 457 (1219)
..++-.. ++.+.++. +..... ...... .+.+.-.|.++...+ ++.+++||.+ +..+++|.. ....
T Consensus 401 e~avRes--~~~vki~k-nfke~k----si~~~~----~~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrrI~v--~~k~ 466 (794)
T KOG0276|consen 401 EFAVRES--NGNVKIFK-NFKEHK----SIRPDM----SAEGIFGGPLLGVRS-SDFLCFYDWESGELVRRIEV--TSKH 466 (794)
T ss_pred eEEEEec--CCceEEEe-cceecc----cccccc----ceeeecCCceEEEEe-CCeEEEEEcccceEEEEEee--ccce
Confidence 6655432 46777772 111100 111111 122333355666666 7889999988 778888765 4678
Q ss_pred EEEeCCCcEEEE-eCCeEEEEEcC---------CCeEEEEEec-----------CCeeEEEEcCCCCEEEEEeCCe----
Q 000936 458 IFYAGTGNLLCR-AEDRVVIFDLQ---------QRLVLGDLQT-----------PFVKYVVWSNDMESVALLSKHA---- 512 (1219)
Q Consensus 458 l~~s~dg~~L~s-~d~~I~l~dl~---------~~~~l~~~~~-----------~~v~~v~ws~dg~~la~~s~~~---- 512 (1219)
+.|+.+|.+++. +|...+++.+. +|..+.+-.. ..|+.-.|-.| .++.+.+.+.
T Consensus 467 v~w~d~g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~eeGiedAfevLgE~sE~v~tg~WvgD-~fiytts~nrlnY~ 545 (794)
T KOG0276|consen 467 VYWSDNGELVAIAGDDSFYILKFNADAVANAVEQGIEVTEEGIEDAFEVLGEVSESVKTGKWVGD-CFIYTTSNNRLNYL 545 (794)
T ss_pred eEEecCCCEEEEEecCceeEEEecHHHHHHHHhcCCCCcchhHHHHHHHHhhhhhheeeceeeee-EEEEeecccceeEE
Confidence 999999999966 57776666543 3332221110 23444455442 2222222222
Q ss_pred -----EEEEe--cCccceeeeeeeeEEeeeEEecCCeEEEEc-CCeeeEE--ecCCcee----EEEeccccEEEEEEeCC
Q 000936 513 -----IIIAS--KKLVHQCTLHETIRVKSGAWDDNGVFIYTT-LNHIKYC--LPNGDSG----IIRTLDVPIYITKVSGN 578 (1219)
Q Consensus 513 -----i~i~~--~~l~~~~~~~e~~~iks~~wd~~~~~iy~t-~~~iky~--l~~g~~~----~i~~~~~~~~l~~~~~~ 578 (1219)
.+++. ..+-.+..+....++--+-- +-++.-|.- +..+.|. .+.+|.. .+-+++.+. ..+
T Consensus 546 vgGe~~~v~h~~~~mylLgy~~~~~rvYL~Dk-e~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k~~-----rt~ 619 (794)
T KOG0276|consen 546 VGGETYTVAHLDRIMYLLGYVANDNRVYLHDK-ELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPKEI-----RTK 619 (794)
T ss_pred cCCceEEEEEeccchhheeeeecCCEEEEeec-ccceEeEeeehHHHHHHHHhhhccccccccccccCchhh-----hhh
Confidence 22221 11111222211111110000 112222221 1112221 1222221 111111111 111
Q ss_pred EEEEEec-CCceEEEEe-CchhHhHHHHHhccCHHHHHHhhhcCcccchhHHHHHHhCCChhhhhccccCcchhhhHHhh
Q 000936 579 TIFCLDR-DGKNRAIVI-DATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALE 656 (1219)
Q Consensus 579 ~l~~l~~-~~~~~~~~l-d~~e~~f~~~l~~~~~~~a~~~i~~~~~~~~~i~~~l~~~g~~e~Al~~~~d~~~rf~lal~ 656 (1219)
...++.+ ..+-..+.+ ....++|.+++..|+++.|..+....+- ..-|+-|. ++|+.
T Consensus 620 va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~s--~~Kw~~Lg-------------------~~al~ 678 (794)
T KOG0276|consen 620 VAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEANS--EVKWRQLG-------------------DAALS 678 (794)
T ss_pred HHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhcc--hHHHHHHH-------------------HHHhh
Confidence 1122222 222233444 3467899999999999999998876442 22222222 44666
Q ss_pred cCCHHHHHHHHH-------------HhCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHH
Q 000936 657 SGNIQIAVASAK-------------EIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLK 723 (1219)
Q Consensus 657 ~g~~~~A~~~a~-------------~l~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~ 723 (1219)
.|++..|.+|.. ..++.+....||..|.++|.++.|-.||-..++++.+..|...++.+.++.-+++
T Consensus 679 ~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal~Ar 758 (794)
T KOG0276|consen 679 AGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQRLPEAALFAR 758 (794)
T ss_pred cccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHHHHHHh
Confidence 666666666654 3566788999999999999999999999999999999999888888888776655
No 12
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-40 Score=371.62 Aligned_cols=478 Identities=15% Similarity=0.237 Sum_probs=392.4
Q ss_pred cceecc-cCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCC--EEEEEECCCeEEEE
Q 000936 2 LTKFET-KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP--LFVSGGDDYKIKVW 78 (1219)
Q Consensus 2 l~~l~~-h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~--~Lasgs~Dg~I~vW 78 (1219)
++.+++ |+++|..++|+|.+..|++|+.||.|+|||+..+.+.+.|++|.+.|.++.|+|+-. .|++|+.|+++++|
T Consensus 97 irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vw 176 (775)
T KOG0319|consen 97 IRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVW 176 (775)
T ss_pred hHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEE
Confidence 345666 999999999999999999999999999999999999999999999999999999765 58999999999999
Q ss_pred EcCCCe-EEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecC-----CCEEEE
Q 000936 79 NYKMHR-CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK-----EDLVVS 152 (1219)
Q Consensus 79 d~~~~~-~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~-----~~~l~s 152 (1219)
|+.+++ ++.++..|.+.|+++.|++|+..+++++.|..+.+||+.+.+...++.. ...+.++.+.++ +.++++
T Consensus 177 nl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~vv~l~~~~~~~~~~~~T 255 (775)
T KOG0319|consen 177 NLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLESVVRLREELGGKGEYIIT 255 (775)
T ss_pred EcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheech-hhheeeEEEechhcCCcceEEEE
Confidence 998554 4888899999999999999999999999999999999987776666652 345677777776 679999
Q ss_pred EECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000936 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1219)
Q Consensus 153 ~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd 232 (1219)
++.+|.+++||..+.+....... .. ...+..+...+....++..+.|..+.+||
T Consensus 256 aG~~g~~~~~d~es~~~~~~~~~-------------------------~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d 309 (775)
T KOG0319|consen 256 AGGSGVVQYWDSESGKCVYKQRQ-------------------------SD-SEEIDHLLAIESMSQLLLVTAEQNLFLYD 309 (775)
T ss_pred ecCCceEEEEecccchhhhhhcc-------------------------CC-chhhhcceeccccCceEEEEccceEEEEE
Confidence 99999999999988654332110 00 11145555556566677778899999999
Q ss_pred CCCCCeeeEEeecCCCCCeEEEEE-ccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEe-C
Q 000936 233 MNETKAWEVDTLRGHMNNVSCVMF-HAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH-D 310 (1219)
Q Consensus 233 ~~~~~~~~~~~~~~h~~~I~~l~~-sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~-d 310 (1219)
..+.+. ...+.|..+.|..+.| .|+.++|++++..+.+|+|+..+..+. .+.+|.+.+.++....+|-++++|+ |
T Consensus 310 ~~~l~i--~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD 386 (775)
T KOG0319|consen 310 EDELTI--VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKD 386 (775)
T ss_pred ccccEE--ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCC
Confidence 988886 7788888899999987 467799999999999999998877665 7889999999999777888888876 6
Q ss_pred CCeeEEEecCCcc------------------eEEecC-CEEEEE-eCCeEEEEEecCCcce---eeEeecCCCCCCCCCC
Q 000936 311 SGMIVFKLERERP------------------AFAVSG-DSLFYA-KDRFLRYYEFSTQKDT---QVIPIRRPGSTSLNQS 367 (1219)
Q Consensus 311 ~gi~v~~l~~~~~------------------~~s~~~-~~l~~~-~d~~i~v~d~~~~~~~---~~~~~~~~~~~~~~~~ 367 (1219)
..+++|+++.... +++..+ ..++.+ .|.++++|++...+.. ..+..+.... .|...
T Consensus 387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~-aHdKd 465 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER-AHDKD 465 (775)
T ss_pred ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH-hhccc
Confidence 7788999954332 222222 345555 9999999999873322 1121111111 12449
Q ss_pred CeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC-Ccee
Q 000936 368 PRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVV 446 (1219)
Q Consensus 368 i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~ 446 (1219)
|.+++++|+.+ ++++++.|.+.+||+++. ..+...+.+|...+.++.|++..+.+++++.|++|+||.++ ..++
T Consensus 466 IN~Vaia~ndk--LiAT~SqDktaKiW~le~---~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl 540 (775)
T KOG0319|consen 466 INCVAIAPNDK--LIATGSQDKTAKIWDLEQ---LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL 540 (775)
T ss_pred ccceEecCCCc--eEEecccccceeeecccC---ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceee
Confidence 99999999998 446667799999999983 34445789999999999999999999999999999999999 8899
Q ss_pred EeeeCCc-ceEEEEEeCCCcEEEEe--CCeEEEEEcCCCeEEEEEec--CCeeEEEEcCCCCEEEEEeCCeEEE
Q 000936 447 KKSILPI-AADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMESVALLSKHAIII 515 (1219)
Q Consensus 447 ~~i~~~~-~v~~l~~s~dg~~L~s~--d~~I~l~dl~~~~~l~~~~~--~~v~~v~ws~dg~~la~~s~~~i~i 515 (1219)
+++.+|. .|....|-.+|+.|++. ||-+.+|++.++.++.++.. ..|..++-++++.++++++.++.++
T Consensus 541 kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~ 614 (775)
T KOG0319|consen 541 KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRII 614 (775)
T ss_pred eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEE
Confidence 9999988 99999999999999884 89999999999999999987 7899999999999999888887554
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.1e-39 Score=347.98 Aligned_cols=462 Identities=15% Similarity=0.279 Sum_probs=372.0
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECC----CeEEEEECCCCeEEEEecccCCCEEEEEEecCCC-EEEEEECCCeEEE
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHS----GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKV 77 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~d----g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~v 77 (1219)
.+|+.-.++|+.|+|++|+++|++.+.. |.+.+|| +|..+..+.+|...|.+++|-|..+ +++||++|++|.+
T Consensus 97 nef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~f 174 (603)
T KOG0318|consen 97 NEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAF 174 (603)
T ss_pred eeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEE
Confidence 3566678999999999999999888653 4566676 8889999999999999999999888 6999999999999
Q ss_pred EEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEecCCCEEEEEE
Q 000936 78 WNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT---GHNHYVMCASFHPKEDLVVSAS 154 (1219)
Q Consensus 78 Wd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~---~h~~~V~~l~~sp~~~~l~s~s 154 (1219)
|.-...+...++..|...|.|+.|+|||.++++++.||+|.+||-.+|+.+..+. +|.+.|.+++|+||+..++++|
T Consensus 175 feGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S 254 (603)
T KOG0318|consen 175 FEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS 254 (603)
T ss_pred eeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec
Confidence 9977777778888999999999999999999999999999999999999999997 8999999999999999999999
Q ss_pred CCCeEEEEECCCCccccccCCc---------------cceeeccccc-cccccccceEEEEEeecCCCeEEEEEcCCCCE
Q 000936 155 LDQTVRVWDIGALRKKTVSPAD---------------DILRLSQMNT-DLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL 218 (1219)
Q Consensus 155 ~dg~I~vwd~~~~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~ 218 (1219)
.|.++++||+.+.+.....+.. .++.++..+. ..+...+..+..++.||...|+++..+|++.+
T Consensus 255 aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 255 ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence 9999999999987665443322 1222222222 33444555577789999999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeEEee--cCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE--EecCCCCEE
Q 000936 219 IVSGADDRQVKLWRMNETKAWEVDTL--RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT--FRREHDRFW 294 (1219)
Q Consensus 219 l~sg~~dg~I~iwd~~~~~~~~~~~~--~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~--~~~~~~~i~ 294 (1219)
|++|+.||.|.-|+..++.. ..+ ++|.+.|.+++-+..+ .+++.+.|.++++.++..+..... ++... ...
T Consensus 335 i~SgsyDG~I~~W~~~~g~~---~~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~-QP~ 409 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTS---DRLAGKGHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDNGYTKSEVVKLGS-QPK 409 (603)
T ss_pred EEeeccCceEEEEecCCccc---cccccccccceEEEEeecCCC-cEEEEecCCeEEEEecccCcccccceeecCC-Cce
Confidence 99999999999999998874 333 6799999999988644 477888999999998865433222 23233 334
Q ss_pred EEEEeCCCCEEEEEeCCCeeEEEecC-----------CcceEEecCCEEEEE-eCCeEEEEEecCCcceeeEeecCCCCC
Q 000936 295 ILASHPEMNLLAAGHDSGMIVFKLER-----------ERPAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGST 362 (1219)
Q Consensus 295 ~l~~sp~~~~la~g~d~gi~v~~l~~-----------~~~~~s~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~ 362 (1219)
+++..+++.+++....+++.+..-.+ ...+++++++.++++ .|+.+++|.+..+..........+
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h--- 486 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEH--- 486 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecc---
Confidence 89999999888888888888775221 223777888999998 999999999998765444333332
Q ss_pred CCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC
Q 000936 363 SLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK 442 (1219)
Q Consensus 363 ~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~ 442 (1219)
..+|+.++||||+.+++++.. .+.+.+|+........ ....-|...|.+++|+|+++.+++++-|..|.||+++
T Consensus 487 --~a~iT~vaySpd~~yla~~Da--~rkvv~yd~~s~~~~~--~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 487 --RAAITDVAYSPDGAYLAAGDA--SRKVVLYDVASREVKT--NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred --cCCceEEEECCCCcEEEEecc--CCcEEEEEcccCceec--ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 239999999999998866543 6789999998765421 1355689999999999999999999999999999998
Q ss_pred C--ceeEeeeCCc-ceEEEEEeCCCcEEEEe-CCeEEEEEcC
Q 000936 443 N--EVVKKSILPI-AADAIFYAGTGNLLCRA-EDRVVIFDLQ 480 (1219)
Q Consensus 443 ~--~~~~~i~~~~-~v~~l~~s~dg~~L~s~-d~~I~l~dl~ 480 (1219)
. +.+.....|. .|+.+.|-.+..++-++ |..|++|.+.
T Consensus 561 kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 561 KPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 3 3333333444 89999999887777665 8999999873
No 14
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-39 Score=365.47 Aligned_cols=473 Identities=18% Similarity=0.304 Sum_probs=385.3
Q ss_pred CCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 000936 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1219)
Q Consensus 10 ~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1219)
..|+|+.-+|+...||+|..||.|+||+..++....++.+|...|+++.|...|.+|+|||.|+.|.|||+-...-++.+
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL 145 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL 145 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCc-
Q 000936 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168 (1219)
Q Consensus 90 ~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~- 168 (1219)
.||.+.|+...|..+.+++++.+.|+.|++||+.+..|..+.-.|.+.+..+++++ +.+++++.|+.+++|++....
T Consensus 146 ~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D 223 (888)
T KOG0306|consen 146 RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDD 223 (888)
T ss_pred ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccc
Confidence 99999999999999889999999999999999999999999999999999999997 789999999999999981100
Q ss_pred -----------------------cccc-cC-Cccc------------ee-------------------------------
Q 000936 169 -----------------------KKTV-SP-ADDI------------LR------------------------------- 180 (1219)
Q Consensus 169 -----------------------~~~~-~~-~~~~------------~~------------------------------- 180 (1219)
.... .+ .... +.
T Consensus 224 ~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v 303 (888)
T KOG0306|consen 224 EKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDV 303 (888)
T ss_pred cccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccch
Confidence 0000 00 0000 00
Q ss_pred ------------------------eccc-ccc--c--c-----------------ccccceEEEEEeecCCCeEEEEEcC
Q 000936 181 ------------------------LSQM-NTD--L--F-----------------GGVDAVVKYVLEGHDRGVNWAAFHP 214 (1219)
Q Consensus 181 ------------------------~~~~-~~~--~--~-----------------~~~~~~~~~~~~~~~~~V~~l~~sp 214 (1219)
+... +.. + . ...+..-...+.+|...|.+++++.
T Consensus 304 ~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~ 383 (888)
T KOG0306|consen 304 EKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS 383 (888)
T ss_pred hhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec
Confidence 0000 000 0 0 0000111235668999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEE
Q 000936 215 TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFW 294 (1219)
Q Consensus 215 ~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~ 294 (1219)
+...+++|+ .+.+++|+..+.++ +.++.. +.+.+..|-|.++++++|...|.+.+||+.+...+.+++.|.+.+|
T Consensus 384 d~~~~~Sga-~~SikiWn~~t~kc--iRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIW 458 (888)
T KOG0306|consen 384 DSILLASGA-GESIKIWNRDTLKC--IRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIW 458 (888)
T ss_pred CceeeeecC-CCcEEEEEccCcce--eEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccccee
Confidence 976666655 57899999999997 777764 3788999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecC-----CcceeeEeecCCCCCCCCCCCe
Q 000936 295 ILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFST-----QKDTQVIPIRRPGSTSLNQSPR 369 (1219)
Q Consensus 295 ~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~-----~~~~~~~~~~~~~~~~~~~~i~ 369 (1219)
+++.+||+..+++|+. |++|++||+.- +....++.+.......+...|.
T Consensus 459 si~~~pD~~g~vT~sa--------------------------DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 459 SISLSPDNKGFVTGSA--------------------------DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred eeeecCCCCceEEecC--------------------------CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 9999999999998873 55666666542 1111112222111112233899
Q ss_pred EEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC-CceeEe
Q 000936 370 TLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKK 448 (1219)
Q Consensus 370 ~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~ 448 (1219)
++++||||++++++-- |.++.+|-++.-.. ...+-||.-+|.++..|||++++++++.|..|+||-++ |.+.+.
T Consensus 513 ~v~~Spdgk~LaVsLL--dnTVkVyflDtlKF---flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS 587 (888)
T KOG0306|consen 513 CVSVSPDGKLLAVSLL--DNTVKVYFLDTLKF---FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS 587 (888)
T ss_pred EEEEcCCCcEEEEEec--cCeEEEEEecceee---eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh
Confidence 9999999998877554 67999999886432 22578999999999999999999999999999999999 999999
Q ss_pred eeCCc-ceEEEEEeCCCcEEEE--eCCeEEEEEcCCCeEEEEEec--CCeeEEEEcCCCCEEEEEeC-CeEEEEecCc
Q 000936 449 SILPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMESVALLSK-HAIIIASKKL 520 (1219)
Q Consensus 449 i~~~~-~v~~l~~s~dg~~L~s--~d~~I~l~dl~~~~~l~~~~~--~~v~~v~ws~dg~~la~~s~-~~i~i~~~~l 520 (1219)
+-.|. .|.++.|-|...++.+ .|+.|+-||-..-+.++.+.+ ..|+.++.+|+|.++++++. +.|-+|...-
T Consensus 588 ~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99888 8999999998666654 389999999999999998887 78999999999999999988 6688887653
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.1e-38 Score=353.89 Aligned_cols=422 Identities=17% Similarity=0.263 Sum_probs=356.5
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeE--EEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL--IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~--i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1219)
+++.||.+.|+++.|+.|.++|++|+.|-+++||+++..+- ...+.+|.++|.+.-|..+..-+++.+.||.+.+|..
T Consensus 139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~ 218 (893)
T KOG0291|consen 139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTC 218 (893)
T ss_pred eeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEe
Confidence 57889999999999999999999999999999999986655 5667899999999999999999999999999999987
Q ss_pred CC-----------------------CeE-----E------EEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 000936 81 KM-----------------------HRC-----L------FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126 (1219)
Q Consensus 81 ~~-----------------------~~~-----~------~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~ 126 (1219)
.. ++. . .-+......|++.+||+....|+++-..|...+|.+..-.
T Consensus 219 ~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~ 298 (893)
T KOG0291|consen 219 DLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFN 298 (893)
T ss_pred cCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCce
Confidence 61 110 1 1122233689999999999999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEecCCCEEEEEECC-CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCC
Q 000936 127 CISVLTGHNHYVMCASFHPKEDLVVSASLD-QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR 205 (1219)
Q Consensus 127 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d-g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1219)
+++.+.-...+|..++|+..|++|+.|+.. |.+-||+..+.. ......+|..
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs---------------------------YVlKQQgH~~ 351 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES---------------------------YVLKQQGHSD 351 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc---------------------------eeeecccccc
Confidence 999999888999999999999999998865 799999987632 3446678999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE
Q 000936 206 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT 285 (1219)
Q Consensus 206 ~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~ 285 (1219)
.+++++++|||+++++|++||.|++||...+-+ ..++..|++.|+.+.|+..|+.+++.+-||+|+.||+......++
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC--~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRT 429 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC--FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRT 429 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceE--EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeee
Confidence 999999999999999999999999999999888 899999999999999999999999999999999999999999999
Q ss_pred EecCC-CCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCC
Q 000936 286 FRREH-DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSL 364 (1219)
Q Consensus 286 ~~~~~-~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 364 (1219)
|..+. -.+.+++..|.|.++.+|..+.. .|.+|++++|+.+.+++ ||
T Consensus 430 ft~P~p~QfscvavD~sGelV~AG~~d~F-------------------------~IfvWS~qTGqllDiLs----GH--- 477 (893)
T KOG0291|consen 430 FTSPEPIQFSCVAVDPSGELVCAGAQDSF-------------------------EIFVWSVQTGQLLDILS----GH--- 477 (893)
T ss_pred ecCCCceeeeEEEEcCCCCEEEeeccceE-------------------------EEEEEEeecCeeeehhc----CC---
Confidence 88654 45889999999999999986443 57799999999866553 33
Q ss_pred CCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC-C
Q 000936 365 NQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-N 443 (1219)
Q Consensus 365 ~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~ 443 (1219)
.++|.+++|+|+|..+ ++++-|.+|++|++-... ++. ..-.+...+..+.|.|+|+-+++++-||+|.+||.+ +
T Consensus 478 EgPVs~l~f~~~~~~L--aS~SWDkTVRiW~if~s~-~~v--Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 478 EGPVSGLSFSPDGSLL--ASGSWDKTVRIWDIFSSS-GTV--ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred CCcceeeEEccccCeE--EeccccceEEEEEeeccC-cee--eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 5599999999999944 556678899999986542 111 122455668999999999999999999999999987 4
Q ss_pred ceeEeee----------------CC-----cceEEEEEeCCCcEEEEe--CCeEEEEEcCCCeEEEEEec
Q 000936 444 EVVKKSI----------------LP-----IAADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT 490 (1219)
Q Consensus 444 ~~~~~i~----------------~~-----~~v~~l~~s~dg~~L~s~--d~~I~l~dl~~~~~l~~~~~ 490 (1219)
.....+. .. ...+.|++|+||..++++ ...|++||+.++-+++.+..
T Consensus 553 ~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqi 622 (893)
T KOG0291|consen 553 VQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQI 622 (893)
T ss_pred eeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEe
Confidence 3332222 11 168899999999999886 58899999999988887765
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-40 Score=351.92 Aligned_cols=274 Identities=23% Similarity=0.436 Sum_probs=263.2
Q ss_pred ccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecC--CCEEEEEECCCeEEEEEcCCCe
Q 000936 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS--QPLFVSGGDDYKIKVWNYKMHR 84 (1219)
Q Consensus 7 ~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~--~~~Lasgs~Dg~I~vWd~~~~~ 84 (1219)
|-+.+|..+.||+|++.|+||+-+|.++||+..++..+.+|.+|.+.|.++.|+|. +..+|||+.||++++|++++..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 55789999999999999999999999999999999999999999999999999997 5689999999999999999999
Q ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEEC
Q 000936 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (1219)
Q Consensus 85 ~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~ 164 (1219)
++..+.+|...|..++|+|+|++|+|++.|.+-++||+.+++.+....||+..|.+++|+|+|.++++|+.|..-||||+
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEee
Q 000936 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL 244 (1219)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 244 (1219)
++++. ...+.+|...|.+++|+|+|..+++|+.|++++|||++..+. +.++
T Consensus 333 Rtgr~---------------------------im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~--ly~i 383 (459)
T KOG0272|consen 333 RTGRC---------------------------IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE--LYTI 383 (459)
T ss_pred ccCcE---------------------------EEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc--ceec
Confidence 99764 457889999999999999999999999999999999999887 8999
Q ss_pred cCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEe
Q 000936 245 RGHMNNVSCVMFHA-KQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (1219)
Q Consensus 245 ~~h~~~I~~l~~sp-~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~ 309 (1219)
.+|.+-|+.+.|+| .|.+|++++.|+++++|...+..+++++.+|.+.|.++.+++++..+++++
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEec
Confidence 99999999999999 788999999999999999999999999999999999999999999999876
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=313.88 Aligned_cols=279 Identities=21% Similarity=0.392 Sum_probs=260.9
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1219)
+.|+||.+.|.++.|++|.++|++++.||.+.|||.-+...++-+.-....|..++|+|.|+++|.||-|+...||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 57899999999999999999999999999999999999998998888899999999999999999999999999999986
Q ss_pred C------eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEec-CCCEEEEEEC
Q 000936 83 H------RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-KEDLVVSASL 155 (1219)
Q Consensus 83 ~------~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~ 155 (1219)
. +..+.+.+|.+++.|+.|-+|+ .|+++|.|.+..+||+++++.+..+.+|.+.|+++.++| +++.+++|+.
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc
Confidence 5 4566789999999999999865 699999999999999999999999999999999999999 8999999999
Q ss_pred CCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000936 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (1219)
Q Consensus 156 dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~ 235 (1219)
|++.++||++.+. ++..+.+|...|++++|+|+|.-|++|++|++.++||++.
T Consensus 208 D~~aklWD~R~~~---------------------------c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQ---------------------------CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred ccceeeeeccCcc---------------------------eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 9999999998753 5668999999999999999999999999999999999999
Q ss_pred CCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEe
Q 000936 236 TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (1219)
Q Consensus 236 ~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~ 309 (1219)
.+...+..-..-..+|++++||..|++|++|..|.++.+||.-+++.+..+.+|.++|.++..+|||..+++|+
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGS 334 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecc
Confidence 88755555555567899999999999999999999999999999999999999999999999999999999997
No 18
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=6.3e-37 Score=338.36 Aligned_cols=621 Identities=16% Similarity=0.248 Sum_probs=427.0
Q ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEc
Q 000936 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL 90 (1219)
Q Consensus 11 ~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~ 90 (1219)
.|..++|-|||..|+.+. +..+.+||...|.++.++++|.+.|.|++|+.||++++||+.|..|.+|+.+-...+. -
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--Y 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--Y 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--e
Confidence 799999999999998874 5679999999999999999999999999999999999999999999999865333222 2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccc
Q 000936 91 GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK 170 (1219)
Q Consensus 91 ~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~ 170 (1219)
.|.+.|.|+.|+|-+..++|++-. ..-+|......... .+ ....+.+++|..||.+++.|-.+|+|.+-+-.+..+.
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-hh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 499999999999999999998864 46788765433222 11 3456889999999999999999999998865442221
Q ss_pred cccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCC-----CEEEEEeCCCeEEEEECCCCCeeeEEeec
Q 000936 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-----PLIVSGADDRQVKLWRMNETKAWEVDTLR 245 (1219)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-----~~l~sg~~dg~I~iwd~~~~~~~~~~~~~ 245 (1219)
......|...+|.+++|+|.. ..+++.....++.+|.++... +..-+
T Consensus 168 -------------------------~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~---Igk~r 219 (1081)
T KOG1538|consen 168 -------------------------KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ---IGKDR 219 (1081)
T ss_pred -------------------------EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee---ecccc
Confidence 112233567899999999963 378888888999999887654 44334
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCee-EEEec-----
Q 000936 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-VFKLE----- 319 (1219)
Q Consensus 246 ~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~-v~~l~----- 319 (1219)
.-.-...|+++.++|.+++.|+.|+.+.+|. +.|-.+.+.......||.++.+|+++.++.|+.+|.+ .|++-
T Consensus 220 ~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH 298 (1081)
T KOG1538|consen 220 ALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVH 298 (1081)
T ss_pred cCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhh
Confidence 4445567999999999999999999999996 6677788887778899999999999999999877754 23221
Q ss_pred ---CCcc-----------------------------eEEecCCEEEEEeCCeEEEEEecCCcceeeEe-ecCCCCCCCCC
Q 000936 320 ---RERP-----------------------------AFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP-IRRPGSTSLNQ 366 (1219)
Q Consensus 320 ---~~~~-----------------------------~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~ 366 (1219)
.++- .++...+++++.-...|.+|...+++..++.. ++..
T Consensus 299 ~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~~mhY~v~ek------- 371 (1081)
T KOG1538|consen 299 GLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLSDMHYRVKEK------- 371 (1081)
T ss_pred hhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccccccchhHHHHH-------
Confidence 1111 33445677777766778889888765543211 1100
Q ss_pred CCeEEEEc---cCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeE--EEEEeCC-eEEEEEcCCCEEEEEe
Q 000936 367 SPRTLSYS---PTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGS--AIFIARN-RFAVLDKSSNQVLVKN 440 (1219)
Q Consensus 367 ~i~~l~~s---pdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~--~~fs~d~-~~l~~~~~dg~I~Iwd 440 (1219)
-...+.+| -.++.++++.. ..++.+++.+-....- ... +-|+- +.=.|-| .-++.|..||.|.--=
T Consensus 372 I~kkf~cSLlVVc~~HiVlCqe---krLqClDF~Gvk~ReW--~M~---S~iRYikV~GGP~gREgL~vGlknGqV~kiF 443 (1081)
T KOG1538|consen 372 IIKKFECSLLVVCANHIVLCQE---KRLQCLDFSGVKEREW--QME---SLIRYIKVIGGPPGREGLLVGLKNGQVLKIF 443 (1081)
T ss_pred HHhhccceEEEEEcCeEEEEcc---cceeeecccchhhhhh--hHH---HHHHhhhhhcCCCCcceeEEEecCCcEEEEE
Confidence 00111121 12334444433 5666666553211000 000 00111 1111333 2355555566554332
Q ss_pred cCCce-eEeeeCCcceEEEEEeCCCcEEEEe--CCeEEEEEcCCCeEEEEEecCCeeEEEEcCCC-CEEEEEeCCeEEEE
Q 000936 441 LKNEV-VKKSILPIAADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDM-ESVALLSKHAIIIA 516 (1219)
Q Consensus 441 l~~~~-~~~i~~~~~v~~l~~s~dg~~L~s~--d~~I~l~dl~~~~~l~~~~~~~v~~v~ws~dg-~~la~~s~~~i~i~ 516 (1219)
+++.. +.-...-..|.++..+...+.|++- .++..++|+.+++.+.+-+ ++.+|+|+... .++++.+.+.+-|-
T Consensus 444 ~dN~~PiLl~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QEp--g~nSV~wNT~~E~MlcfT~~g~L~VR 521 (1081)
T KOG1538|consen 444 VDNLFPILLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQEP--GANSVAWNTQCEDMLCFTGGGYLNVR 521 (1081)
T ss_pred ecCCchhheecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeecC--CCceEEeeccccceEEEecCCceEEE
Confidence 44332 2222222378999999998888775 3778889999999876655 58899998754 34444443332221
Q ss_pred ecCccceeeeeeeeEEeeeEEecCCeEEEEcCCeeeEEecCCceeEEEeccccEEEEEEeCCEEEEEecCCceEEEEeCc
Q 000936 517 SKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDA 596 (1219)
Q Consensus 517 ~~~l~~~~~~~e~~~iks~~wd~~~~~iy~t~~~iky~l~~g~~~~i~~~~~~~~l~~~~~~~l~~l~~~~~~~~~~ld~ 596 (1219)
. +.+ ...+....-|++++.++++||+.- ..+.+
T Consensus 522 ~-----------------~~~------------------------P~h~qk~~G~VvG~~gsk~FCL~~------~~i~~ 554 (1081)
T KOG1538|consen 522 A-----------------STF------------------------PVHRQKLQGFVVGYNGSKIFCLHV------FSISA 554 (1081)
T ss_pred e-----------------ccC------------------------CcchhcceEEEEEecCceEEEEEe------eeeec
Confidence 1 000 001122233778889999999841 11222
Q ss_pred hhHhHHHHHhccCHHHHHHhhhcCcccchhHHHHHHhCCChhhhhccccCcchhhhHHhhcCCHHHHHHHHHHhCChhHH
Q 000936 597 TEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHW 676 (1219)
Q Consensus 597 ~e~~f~~~l~~~~~~~a~~~i~~~~~~~~~i~~~l~~~g~~e~Al~~~~d~~~rf~lal~~g~~~~A~~~a~~l~~~~~w 676 (1219)
.....+..++.|++ .|.+++|++.+-----...|
T Consensus 555 ----------------------~evp~~~~m~q~Ie------------------------ag~f~ea~~iaclgVv~~DW 588 (1081)
T KOG1538|consen 555 ----------------------VEVPQSAPMYQYIE------------------------RGLFKEAYQIACLGVTDTDW 588 (1081)
T ss_pred ----------------------ccccccccchhhhh------------------------ccchhhhhcccccceecchH
Confidence 11222344555554 34445555444321123349
Q ss_pred HHHHHHHHHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHHHHHHcCChhHHHHHHHhcCCHHHHHHHHHHcCC
Q 000936 677 YRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGH 756 (1219)
Q Consensus 677 ~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~~~~~~~~~~~~~~al~lgd~~eai~i~~~~g~ 756 (1219)
+.||+.|++..++++|.++|.+.+|...|..+ .+|+++.+..+..++ ...+.++.|.|.|.||.++|.++|+
T Consensus 589 ~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li-------~EL~~~k~rge~P~~-iLlA~~~Ay~gKF~EAAklFk~~G~ 660 (1081)
T KOG1538|consen 589 RELAMEALEALDFETARKAYIRVRDLRYLELI-------SELEERKKRGETPND-LLLADVFAYQGKFHEAAKLFKRSGH 660 (1081)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhccHHHHHH-------HHHHHHHhcCCCchH-HHHHHHHHhhhhHHHHHHHHHHcCc
Confidence 99999999999999999999999999999887 888888765444433 4456889999999999999999999
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHcCCCC
Q 000936 757 LPLAYITASVHGLQDVAERLAAELGDNV 784 (1219)
Q Consensus 757 ~~~A~~la~~~g~~~~a~~l~~~~~~~~ 784 (1219)
-..|++|+..+-+.|.|.+.+....+.|
T Consensus 661 enRAlEmyTDlRMFD~aQE~~~~g~~~e 688 (1081)
T KOG1538|consen 661 ENRALEMYTDLRMFDYAQEFLGSGDPKE 688 (1081)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCChHH
Confidence 9999999999999999999998755443
No 19
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8e-35 Score=328.06 Aligned_cols=411 Identities=17% Similarity=0.267 Sum_probs=335.4
Q ss_pred cceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 000936 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1219)
+.+|.||...|+++.|+..|..|++|+.|+.|.|||+-...-..++.+|...|+..-|..+.+++++.+.|+.|++||++
T Consensus 100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~ 179 (888)
T KOG0306|consen 100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE 179 (888)
T ss_pred eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecc
Confidence 45789999999999999999999999999999999998888889999999999999999988999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC----------------C--------------------
Q 000936 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS----------------R-------------------- 125 (1219)
Q Consensus 82 ~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s----------------~-------------------- 125 (1219)
+..|..+...|.+.|+.+++++ +.+++++.|+.+++|++.. |
T Consensus 180 tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r 257 (888)
T KOG0306|consen 180 TQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR 257 (888)
T ss_pred cceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence 9999999999999999999998 6899999999999999810 0
Q ss_pred -----------------------------------------------------------------------------e--
Q 000936 126 -----------------------------------------------------------------------------T-- 126 (1219)
Q Consensus 126 -----------------------------------------------------------------------------~-- 126 (1219)
.
T Consensus 258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~ 337 (888)
T KOG0306|consen 258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT 337 (888)
T ss_pred EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence 0
Q ss_pred ---------E------------------EEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccce
Q 000936 127 ---------C------------------ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIL 179 (1219)
Q Consensus 127 ---------~------------------i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~ 179 (1219)
+ ...+.+|...|.+++++.+...+++|+ .+.+.+|+..+.+..
T Consensus 338 lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kci--------- 407 (888)
T KOG0306|consen 338 LVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCI--------- 407 (888)
T ss_pred EEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCccee---------
Confidence 0 011234556666777776554444443 566777777664432
Q ss_pred eeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccC
Q 000936 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1219)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~ 259 (1219)
.++. ...+.+..|.|.++++++|...|.+.+||+.+... +.+.+.|.+.|++++.+||
T Consensus 408 ------------------RTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l--~Eti~AHdgaIWsi~~~pD 465 (888)
T KOG0306|consen 408 ------------------RTIT--CGYILASKFVPGDRYIVLGTKNGELQVFDLASASL--VETIRAHDGAIWSISLSPD 465 (888)
T ss_pred ------------------EEec--cccEEEEEecCCCceEEEeccCCceEEEEeehhhh--hhhhhccccceeeeeecCC
Confidence 2222 33788899999999999999999999999999887 7788899999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCC-----CeeEEEEe-------cCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEe
Q 000936 260 QDIIVSNSEDKSIRVWDVTK-----RTGVQTFR-------REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAV 327 (1219)
Q Consensus 260 g~~L~s~s~dg~I~iwdl~~-----~~~~~~~~-------~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~ 327 (1219)
+..+++||.|.+|++||..- +.....+. .-.+.+.++.+|||+++++++-
T Consensus 466 ~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL------------------ 527 (888)
T KOG0306|consen 466 NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL------------------ 527 (888)
T ss_pred CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe------------------
Confidence 99999999999999999641 11111111 1346689999999999999886
Q ss_pred cCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccc
Q 000936 328 SGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSV 407 (1219)
Q Consensus 328 ~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~ 407 (1219)
-|+++++|-+.+-+- .+++. || .-+|.++..|||++.++.+ +.|..+++|-++- |.+...
T Consensus 528 --------LdnTVkVyflDtlKF--flsLY--GH---kLPV~smDIS~DSklivTg--SADKnVKiWGLdF---GDCHKS 587 (888)
T KOG0306|consen 528 --------LDNTVKVYFLDTLKF--FLSLY--GH---KLPVLSMDISPDSKLIVTG--SADKNVKIWGLDF---GDCHKS 587 (888)
T ss_pred --------ccCeEEEEEecceee--eeeec--cc---ccceeEEeccCCcCeEEec--cCCCceEEecccc---chhhhh
Confidence 366777777766433 33343 44 2399999999999966544 4578999998874 566667
Q ss_pred cccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC-CceeEeeeCCc-ceEEEEEeCCCcEEEEe--CCeEEEEEcCCCe
Q 000936 408 QDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPI-AADAIFYAGTGNLLCRA--EDRVVIFDLQQRL 483 (1219)
Q Consensus 408 ~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~i~~~~-~v~~l~~s~dg~~L~s~--d~~I~l~dl~~~~ 483 (1219)
+-+|.+.|.++.|.|+..++.+++.|+.|+-||-. -+.++++.+|. .|.+++.+|+|.+++++ |.+|++|.-....
T Consensus 588 ~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred hhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 88999999999999999999999999999999988 77888898887 99999999999999885 7999999865543
Q ss_pred E
Q 000936 484 V 484 (1219)
Q Consensus 484 ~ 484 (1219)
.
T Consensus 668 ~ 668 (888)
T KOG0306|consen 668 L 668 (888)
T ss_pred e
Confidence 3
No 20
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-36 Score=323.75 Aligned_cols=283 Identities=25% Similarity=0.410 Sum_probs=258.1
Q ss_pred ccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCC--CCEEEEEECCCeEEEEECCCCe
Q 000936 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRIWNWQSRT 126 (1219)
Q Consensus 49 ~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d--~~~l~s~s~Dg~I~iwd~~s~~ 126 (1219)
+.+.||..+.||+++..|+||+-+|.++||+..+...+.++.+|...|.++.|+|. +..++||+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 56789999999999999999999999999999999999999999999999999997 5589999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCC
Q 000936 127 CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206 (1219)
Q Consensus 127 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (1219)
++..+.+|...|..++|+|+|++|+|+|.|.+-++||+++..... ..+||..+
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL---------------------------~QEGHs~~ 305 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL---------------------------LQEGHSKG 305 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhH---------------------------hhcccccc
Confidence 999999999999999999999999999999999999999865432 56799999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEE
Q 000936 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286 (1219)
Q Consensus 207 V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~ 286 (1219)
|.+++|+|||.++++|+.|..-+|||+++++. +..+.+|..+|.++.|+|+|..|++||.|++++|||++....+.++
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~--im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i 383 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC--IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI 383 (459)
T ss_pred cceeEecCCCceeeccCccchhheeecccCcE--EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec
Confidence 99999999999999999999999999999998 8899999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEEeC-CCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCC
Q 000936 287 RREHDRFWILASHP-EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLN 365 (1219)
Q Consensus 287 ~~~~~~i~~l~~sp-~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 365 (1219)
..|.+-|+.+.|+| .|.+|++++ .|+++++|...+...... +. || .
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~Tas--------------------------yD~t~kiWs~~~~~~~ks--La--GH---e 430 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTAS--------------------------YDNTVKIWSTRTWSPLKS--LA--GH---E 430 (459)
T ss_pred ccccchhhheEecccCCeEEEEcc--------------------------cCcceeeecCCCcccchh--hc--CC---c
Confidence 99999999999999 667777776 588899999888766433 33 33 4
Q ss_pred CCCeEEEEccCCCEEEEEEeCCCCEEEEEE
Q 000936 366 QSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1219)
Q Consensus 366 ~~i~~l~~spdg~~llv~~~~~dg~i~l~~ 395 (1219)
+.|.++.++||+..++.++ -|.++++|.
T Consensus 431 ~kV~s~Dis~d~~~i~t~s--~DRT~KLW~ 458 (459)
T KOG0272|consen 431 GKVISLDISPDSQAIATSS--FDRTIKLWR 458 (459)
T ss_pred cceEEEEeccCCceEEEec--cCceeeecc
Confidence 4999999999999765544 478999995
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-35 Score=294.60 Aligned_cols=285 Identities=25% Similarity=0.443 Sum_probs=246.0
Q ss_pred cceecccCCCEEEEEEeCC-CCEEEEEECCCeEEEEECC-----CCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeE
Q 000936 2 LTKFETKSNRVKGLSFHSK-RPWILASLHSGVIQLWDYR-----MGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKI 75 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspd-g~~Lasg~~dg~I~iWd~~-----~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I 75 (1219)
..+|++|++.|+.++..+. ...+++++.|.+|.+|++. .|..++.+++|...|..+..+++|++.++++.|+++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 3578999999999999986 5678888999999999874 467899999999999999999999999999999999
Q ss_pred EEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC--CCCeEEEEEecC--CCEEE
Q 000936 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH--NHYVMCASFHPK--EDLVV 151 (1219)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h--~~~V~~l~~sp~--~~~l~ 151 (1219)
++||+.+++..+.|.+|...|.+++|++|++.+++||.|.+|++||... .+..++..+ .+.|.|+.|+|+ ..+|+
T Consensus 88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 9999999999999999999999999999999999999999999999765 444555433 789999999998 57999
Q ss_pred EEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 000936 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (1219)
Q Consensus 152 s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iw 231 (1219)
+++.|++|++||+++.+... .+.+|.+.++.++++|||.+.++|+.||.+.+|
T Consensus 167 s~s~DktvKvWnl~~~~l~~---------------------------~~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lw 219 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRT---------------------------TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLW 219 (315)
T ss_pred EccCCceEEEEccCCcchhh---------------------------ccccccccEEEEEECCCCCEEecCCCCceEEEE
Confidence 99999999999999866543 567899999999999999999999999999999
Q ss_pred ECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC---------CCCEEEEEEeCCC
Q 000936 232 RMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE---------HDRFWILASHPEM 302 (1219)
Q Consensus 232 d~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~---------~~~i~~l~~sp~~ 302 (1219)
|++.++. +..+ +|...|.+++|+|+.-.|+.+... .|+|||+.++..+..++.. .-...+++|+++|
T Consensus 220 dL~~~k~--lysl-~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG 295 (315)
T KOG0279|consen 220 DLNEGKN--LYSL-EAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADG 295 (315)
T ss_pred EccCCce--eEec-cCCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCC
Confidence 9999996 5544 578899999999998877777654 5999999998887765432 2235678899999
Q ss_pred CEEEEEe-CCCeeEEEe
Q 000936 303 NLLAAGH-DSGMIVFKL 318 (1219)
Q Consensus 303 ~~la~g~-d~gi~v~~l 318 (1219)
..|.+|. ++.+.+|.+
T Consensus 296 ~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQV 312 (315)
T ss_pred cEEEeeecCCcEEEEEe
Confidence 9888885 444555543
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-34 Score=288.77 Aligned_cols=296 Identities=22% Similarity=0.386 Sum_probs=249.0
Q ss_pred eEEEEecccCCCEEEEEEecCC-CEEEEEECCCeEEEEEcC-----CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCC
Q 000936 42 TLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYK-----MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ 115 (1219)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd~~-----~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg 115 (1219)
.+..++++|++.|+.++..+.+ ..+++++.|.++.+|++. .|..++.+.||+..|..+..++||++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 4556789999999999999874 488899999999999874 4678999999999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccce
Q 000936 116 TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1219)
Q Consensus 116 ~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1219)
++++||+.+++..+.+.+|...|++++|+|+...+++||.|.+|.+|++-+..
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c--------------------------- 138 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC--------------------------- 138 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE---------------------------
Confidence 99999999999999999999999999999999999999999999999987632
Q ss_pred EEEEEee--cCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCc
Q 000936 196 VKYVLEG--HDRGVNWAAFHPT--LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS 271 (1219)
Q Consensus 196 ~~~~~~~--~~~~V~~l~~sp~--g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~ 271 (1219)
+++... +...|+++.|+|+ .++|++++.|++|++||+++-+. ...+.+|.+.++.+++||||.++++|+.||.
T Consensus 139 -k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGgkdg~ 215 (315)
T KOG0279|consen 139 -KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGGKDGE 215 (315)
T ss_pred -EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccccccccEEEEEECCCCCEEecCCCCce
Confidence 333333 3678999999998 78999999999999999999887 7788999999999999999999999999999
Q ss_pred EEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcce
Q 000936 272 IRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDT 351 (1219)
Q Consensus 272 I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~ 351 (1219)
+.+||++.++.+..+. +...|.+++|+|+...|+.+.+.++.+|+++.... +
T Consensus 216 ~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~---------------------------v 267 (315)
T KOG0279|consen 216 AMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAV---------------------------V 267 (315)
T ss_pred EEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhh---------------------------h
Confidence 9999999999987765 77889999999999999998876666666554433 2
Q ss_pred eeEeecCCCCCCC--CCCCeEEEEccCCCEEEEEEeCCCCEEEEEEec
Q 000936 352 QVIPIRRPGSTSL--NQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1219)
Q Consensus 352 ~~~~~~~~~~~~~--~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~ 397 (1219)
..+.+...+...- .....+++|++||..++... .++.|++|.+.
T Consensus 268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~--td~~irv~qv~ 313 (315)
T KOG0279|consen 268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY--TDNVIRVWQVA 313 (315)
T ss_pred hhccccccccccccCCcEEEEEEEcCCCcEEEeee--cCCcEEEEEee
Confidence 2222222111000 11445679999999876543 47899999875
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-35 Score=306.73 Aligned_cols=279 Identities=26% Similarity=0.468 Sum_probs=262.8
Q ss_pred cceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 000936 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1219)
.+++.+|...|+.+-|+|+...+++++.|++|++||+.+|++...+++|...|..|+|+..|+++++++.|-.+++||..
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C-CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEE
Q 000936 82 M-HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1219)
Q Consensus 82 ~-~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~ 160 (1219)
+ .+++..+.+|...|.+++|-|.|.+++|++.|.+|+.|++.+|-++.++.+|+..|..+..+.||..+++++.|.+|+
T Consensus 181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLR 260 (406)
T ss_pred HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEE
Confidence 6 577888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCC---------------CCEEEEEeCC
Q 000936 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT---------------LPLIVSGADD 225 (1219)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~---------------g~~l~sg~~d 225 (1219)
+|-+.+.+.+ ..+..|..+|.+++|.|. ++++.+++.|
T Consensus 261 vW~~~t~~~k---------------------------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 261 VWVVATKQCK---------------------------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred EEEeccchhh---------------------------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 9999885433 356778889999988762 3589999999
Q ss_pred CeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEE
Q 000936 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLL 305 (1219)
Q Consensus 226 g~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~l 305 (1219)
++|++||+.++.+ +.++.+|.+.|..++|+|.|++|+++..|+++++||++++++..++..|..-++++.|+.+..++
T Consensus 314 ktIk~wdv~tg~c--L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 314 KTIKIWDVSTGMC--LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYV 391 (406)
T ss_pred ceEEEEeccCCeE--EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceE
Confidence 9999999999998 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe
Q 000936 306 AAGH 309 (1219)
Q Consensus 306 a~g~ 309 (1219)
++|+
T Consensus 392 vTGs 395 (406)
T KOG0295|consen 392 VTGS 395 (406)
T ss_pred Eecc
Confidence 9987
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=285.71 Aligned_cols=287 Identities=20% Similarity=0.344 Sum_probs=258.0
Q ss_pred EEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000936 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123 (1219)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~ 123 (1219)
.+++++|.+.|.++.|++|++++++++.||.+.|||.-+...++-+.-....|..++|+|.++++++|+-|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 37889999999999999999999999999999999999988888888889999999999999999999999999999998
Q ss_pred CC------eEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEE
Q 000936 124 SR------TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVK 197 (1219)
Q Consensus 124 s~------~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1219)
+. ...+.+.+|.+++.|+.|.+ ...|+++|.|.+..+||+++++..
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~--------------------------- 179 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQT--------------------------- 179 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEE---------------------------
Confidence 65 44567899999999999987 557999999999999999986653
Q ss_pred EEEeecCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 000936 198 YVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (1219)
Q Consensus 198 ~~~~~~~~~V~~l~~sp-~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwd 276 (1219)
..+.+|.+.|.++.++| +++.+++|+.|+..++||++.+.. +.++.+|...|.++.|.|+|.-+++|+.|++.|+||
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c--~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC--VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYD 257 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce--eEeecccccccceEEEccCCCeeeecCCCceeEEEe
Confidence 36889999999999999 999999999999999999999987 999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEecCC--CCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeE
Q 000936 277 VTKRTGVQTFRREH--DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVI 354 (1219)
Q Consensus 277 l~~~~~~~~~~~~~--~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~ 354 (1219)
++..+.+..+.... .+|++++||..|++|.+|.+ |..+.+||.-.++....+
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~--------------------------d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYD--------------------------DFTCNVWDTLKGERVGVL 311 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccccEEEeeec--------------------------CCceeEeeccccceEEEe
Confidence 99999888887543 57999999999999999874 778889998888775554
Q ss_pred eecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEE
Q 000936 355 PIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1219)
Q Consensus 355 ~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~ 395 (1219)
. || ...|+++..+|||. ++++++-|..++||.
T Consensus 312 ~----GH---eNRvScl~~s~DG~--av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 A----GH---ENRVSCLGVSPDGM--AVATGSWDSTLRIWA 343 (343)
T ss_pred e----cc---CCeeEEEEECCCCc--EEEecchhHheeecC
Confidence 3 33 33999999999998 667777788999983
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-33 Score=301.82 Aligned_cols=326 Identities=19% Similarity=0.323 Sum_probs=280.8
Q ss_pred ecccCCCEEEEEEeCCCC-EEEEEECCCeEEEEECCCC----eEEEEec----------ccCCCEEEEEEecCCCEEEEE
Q 000936 5 FETKSNRVKGLSFHSKRP-WILASLHSGVIQLWDYRMG----TLIDRFD----------EHDGPVRGVHFHKSQPLFVSG 69 (1219)
Q Consensus 5 l~~h~~~V~~i~fspdg~-~Lasg~~dg~I~iWd~~~g----~~i~~l~----------~h~~~V~~l~fsp~~~~Lasg 69 (1219)
+-.|.++|.+.+|+|-.. .+++|+.|.+.++|++... .....++ ..+..|++++|+.+|.+||+|
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 334999999999999766 8999999999999998641 1111111 123569999999999999999
Q ss_pred ECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCE
Q 000936 70 GDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDL 149 (1219)
Q Consensus 70 s~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~ 149 (1219)
+.||.+++|+. +|..+.++..|.++|.++.|+..|.+|++++.|+++.+||..++.....+.-|..+-..+.|-. .+.
T Consensus 254 ~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~ 331 (524)
T KOG0273|consen 254 SEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDE 331 (524)
T ss_pred ecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-Cce
Confidence 99999999995 5888899999999999999999999999999999999999999999999999998877888974 457
Q ss_pred EEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 000936 150 VVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229 (1219)
Q Consensus 150 l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~ 229 (1219)
+++++.||.|+|+.+...+. ..++.+|.+.|+++.|+|.|.+|+++++|++++
T Consensus 332 F~ts~td~~i~V~kv~~~~P---------------------------~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlk 384 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRP---------------------------VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLK 384 (524)
T ss_pred EeecCCCceEEEEEecCCCc---------------------------ceeeecccCceEEEEECCCCceEEEecCCCeeE
Confidence 99999999999999876443 336788999999999999999999999999999
Q ss_pred EEECCCCCeeeEEeecCCCCCeEEEEEccCC---------CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeC
Q 000936 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ---------DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (1219)
Q Consensus 230 iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g---------~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp 300 (1219)
||++..... ...+..|...|..+.|+|.| ..+++++.|++|++||+..+.++.++..|..+|++++|+|
T Consensus 385 iWs~~~~~~--~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~ 462 (524)
T KOG0273|consen 385 IWSMGQSNS--VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP 462 (524)
T ss_pred eeecCCCcc--hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC
Confidence 999988776 88999999999999999964 4799999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEE
Q 000936 301 EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAV 380 (1219)
Q Consensus 301 ~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l 380 (1219)
+|+++|+|+ .|+.|.+|+..+++.... ... ...|..++|+.+|..+
T Consensus 463 ~g~ylAsGs--------------------------~dg~V~iws~~~~~l~~s--~~~------~~~Ifel~Wn~~G~kl 508 (524)
T KOG0273|consen 463 NGRYLASGS--------------------------LDGCVHIWSTKTGKLVKS--YQG------TGGIFELCWNAAGDKL 508 (524)
T ss_pred CCcEEEecC--------------------------CCCeeEeccccchheeEe--ecC------CCeEEEEEEcCCCCEE
Confidence 999999998 477889999998876432 222 2278999999999987
Q ss_pred EEEEeCCCCEEEEEEec
Q 000936 381 LICSDVDGGSYELYVIP 397 (1219)
Q Consensus 381 lv~~~~~dg~i~l~~~~ 397 (1219)
.++.. ++.+.+.++.
T Consensus 509 ~~~~s--d~~vcvldlr 523 (524)
T KOG0273|consen 509 GACAS--DGSVCVLDLR 523 (524)
T ss_pred EEEec--CCCceEEEec
Confidence 66655 6677776653
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.9e-34 Score=326.16 Aligned_cols=248 Identities=27% Similarity=0.550 Sum_probs=229.6
Q ss_pred eecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCC-------------------------------eEEEEecccCC
Q 000936 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-------------------------------TLIDRFDEHDG 52 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g-------------------------------~~i~~l~~h~~ 52 (1219)
++.--...++|..|++|+..||.|..|..|++|.+... ....++-+|.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 34444567999999999999999999999999998621 12345679999
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q 000936 53 PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT 132 (1219)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~ 132 (1219)
||.+..|+|+.++|++++.|+++++|++.+..++..+.||..+|+.+.|+|-|-+++|+|.|++.++|......+.+.+.
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEE
Q 000936 133 GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAF 212 (1219)
Q Consensus 133 ~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 212 (1219)
+|.+.|.|+.|||+.+++++||.|.+||+||+.++.. ...+.||.++|.+++|
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~---------------------------VRiF~GH~~~V~al~~ 585 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS---------------------------VRIFTGHKGPVTALAF 585 (707)
T ss_pred ccccccceEEECCcccccccCCCCceEEEEEcCCCcE---------------------------EEEecCCCCceEEEEE
Confidence 9999999999999999999999999999999987543 4477899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000936 213 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1219)
Q Consensus 213 sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~ 280 (1219)
+|+|++|++|+.||.|.+||+.+++. +..+.+|.+.|.++.|+.+|..|++|+.|.+|++||+...
T Consensus 586 Sp~Gr~LaSg~ed~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 586 SPCGRYLASGDEDGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCCceEeecccCCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999999999999999987 8899999999999999999999999999999999998653
No 27
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.2e-34 Score=294.29 Aligned_cols=276 Identities=25% Similarity=0.472 Sum_probs=248.9
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1219)
+-+.||.+.|.|+++.|-..|+++|+.|++|.|||+.+|++..++.+|-..|+.+++|+-.+|+.+++.|+.|+.||++.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEE
Q 000936 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1219)
Q Consensus 83 ~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vw 162 (1219)
.+.++.+.||...|.|++.+|.-..|++|+.|.+++|||+++...+.++.||..+|.++.+.|....+++||.|++|++|
T Consensus 225 nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 225 NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 000936 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 242 (1219)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~ 242 (1219)
|++.++. ...+..|...|.+++.+|....+++++.|. |+-|++..+.. +.
T Consensus 305 Dl~agkt---------------------------~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f--~~ 354 (460)
T KOG0285|consen 305 DLRAGKT---------------------------MITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEF--LQ 354 (460)
T ss_pred eeccCce---------------------------eEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccch--hh
Confidence 9988664 336778999999999999999999988775 89999999887 77
Q ss_pred eecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEec--------CCCCEEEEEEeCCCCEEEEEe
Q 000936 243 TLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR--------EHDRFWILASHPEMNLLAAGH 309 (1219)
Q Consensus 243 ~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~--------~~~~i~~l~~sp~~~~la~g~ 309 (1219)
.+.+|...|.+++...|+ ++++|+.+|.+.+||.+++-..+.... ....|.+.+|...+..|++|.
T Consensus 355 nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e 428 (460)
T KOG0285|consen 355 NLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE 428 (460)
T ss_pred ccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEecc
Confidence 799999999999998765 788999999999999999876655421 112356666666666666554
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=273.40 Aligned_cols=277 Identities=17% Similarity=0.376 Sum_probs=245.1
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe--EEEEEccCCCCEEEE
Q 000936 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR--CLFTLLGHLDYIRTV 99 (1219)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~--~~~~l~~h~~~I~~l 99 (1219)
-+|++++.|.+|++|...+|.+..+++..++.|..+...|+++.||+++. ..|++||+++++ ++.++.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 47889999999999999999999999988999999999999999999887 489999998764 689999999999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccce
Q 000936 100 QFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIL 179 (1219)
Q Consensus 100 ~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~ 179 (1219)
.|..+|+|+++||+||+++|||+++..+.+.+. |..+|+++..+|+...|++|..+|.|++||+.......
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~-------- 160 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH-------- 160 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc--------
Confidence 999999999999999999999999977776666 77999999999999999999999999999998743221
Q ss_pred eeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC----eeeEEeecCCCCCeEEEE
Q 000936 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK----AWEVDTLRGHMNNVSCVM 255 (1219)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~----~~~~~~~~~h~~~I~~l~ 255 (1219)
.........|.++...|+|.+++.+...|..++|++-+.. ..++..++.|.+.+..+.
T Consensus 161 ------------------~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~ 222 (311)
T KOG0315|consen 161 ------------------ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL 222 (311)
T ss_pred ------------------ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEE
Confidence 1223345778999999999999999999999999987643 345778899999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCC-eeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEE
Q 000936 256 FHAKQDIIVSNSEDKSIRVWDVTKR-TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFY 334 (1219)
Q Consensus 256 ~sp~g~~L~s~s~dg~I~iwdl~~~-~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~ 334 (1219)
+||++++|+++|.|.+++||+..+. +....+.+|+..+|..+||.|+.+|++|+.
T Consensus 223 lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass------------------------ 278 (311)
T KOG0315|consen 223 LSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS------------------------ 278 (311)
T ss_pred ECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC------------------------
Confidence 9999999999999999999999887 556667888889999999999999999984
Q ss_pred EeCCeEEEEEecCCccee
Q 000936 335 AKDRFLRYYEFSTQKDTQ 352 (1219)
Q Consensus 335 ~~d~~i~v~d~~~~~~~~ 352 (1219)
|+.+++|++..++.+.
T Consensus 279 --d~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 279 --DHTARLWDLSAGKEVR 294 (311)
T ss_pred --CCceeecccccCceee
Confidence 6788899998887644
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-32 Score=296.06 Aligned_cols=268 Identities=21% Similarity=0.380 Sum_probs=246.7
Q ss_pred CCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 000936 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1219)
Q Consensus 10 ~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1219)
..|++++|+.+|..||+|+.||.++||+ .+|.++.++..|.+||.++.|+.+|.+|++++.|+++.+||..++.....+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 5799999999999999999999999999 689999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCcc
Q 000936 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169 (1219)
Q Consensus 90 ~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~ 169 (1219)
.-|..+-..+.|-.+. -+++++.||.|+|+.+....++.++.+|.+.|.++.|+|.+.+|+++|.|+++++|+......
T Consensus 315 ~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred eeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc
Confidence 8899887888998765 589999999999999999999999999999999999999999999999999999999765332
Q ss_pred ccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCCeee
Q 000936 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP---------LIVSGADDRQVKLWRMNETKAWE 240 (1219)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~---------~l~sg~~dg~I~iwd~~~~~~~~ 240 (1219)
...+.+|...|..+.|+|+|+ .+++++.|++|++||+..+.+
T Consensus 394 ---------------------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~-- 444 (524)
T KOG0273|consen 394 ---------------------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP-- 444 (524)
T ss_pred ---------------------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce--
Confidence 235778999999999999765 689999999999999999997
Q ss_pred EEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEe
Q 000936 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (1219)
Q Consensus 241 ~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~ 309 (1219)
+..+..|..+|.+++|+|+|+++++|+.||.|.+|+.++++.++.+.. .+.|..++|+.+|..+.+..
T Consensus 445 i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 445 IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACA 512 (524)
T ss_pred eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEe
Confidence 899999999999999999999999999999999999999999988874 45589999999999887664
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.6e-32 Score=271.51 Aligned_cols=279 Identities=25% Similarity=0.397 Sum_probs=238.3
Q ss_pred cceecccCCCEEEEEEeCC-CCEEEEEECCCeEEEEECCCC---eEEEEe-cccCCCEEEEEEecCCCEEEEEECCCeEE
Q 000936 2 LTKFETKSNRVKGLSFHSK-RPWILASLHSGVIQLWDYRMG---TLIDRF-DEHDGPVRGVHFHKSQPLFVSGGDDYKIK 76 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspd-g~~Lasg~~dg~I~iWd~~~g---~~i~~l-~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~ 76 (1219)
++++++|.++|..++|||- |..||+++.|..|++|+...+ .+...+ .+|+..|++++|+|.|++|++++.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 5789999999999999997 889999999999999998743 444445 47999999999999999999999999999
Q ss_pred EEEcCC--CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCeEEEEEecCCCEEE
Q 000936 77 VWNYKM--HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR---TCISVLTGHNHYVMCASFHPKEDLVV 151 (1219)
Q Consensus 77 vWd~~~--~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~---~~i~~~~~h~~~V~~l~~sp~~~~l~ 151 (1219)
||.-.. .+++.++.||...|.+++|+++|.+|++++.|..|.||.+..+ .++..++.|...|..+.|||...+|+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~ 166 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF 166 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeE
Confidence 997553 4789999999999999999999999999999999999998743 57889999999999999999999999
Q ss_pred EEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 000936 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (1219)
Q Consensus 152 s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iw 231 (1219)
++|.|.+|++|+-.. ..+..+..++.+|...|.+++|++.|..|+++++|++++||
T Consensus 167 S~SYDnTIk~~~~~~------------------------dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 167 SCSYDNTIKVYRDED------------------------DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred EeccCCeEEEEeecC------------------------CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEee
Confidence 999999999998652 13456778999999999999999999999999999999999
Q ss_pred ECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee-------EEEEecCCCCEEEEEEeCC-CC
Q 000936 232 RMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG-------VQTFRREHDRFWILASHPE-MN 303 (1219)
Q Consensus 232 d~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~-------~~~~~~~~~~i~~l~~sp~-~~ 303 (1219)
...+.- -..|...++.+.|. ...|++++.|+.|++|.-...-. ...-..|...|+++.|.|. .+
T Consensus 223 ~~~~~~------~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~ 294 (312)
T KOG0645|consen 223 RLYTDL------SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSN 294 (312)
T ss_pred eeccCc------chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCC
Confidence 865322 23477889999998 45799999999999998664211 1122357778999999994 66
Q ss_pred EEEEEeCCC
Q 000936 304 LLAAGHDSG 312 (1219)
Q Consensus 304 ~la~g~d~g 312 (1219)
+|++|+++|
T Consensus 295 ~L~s~~DDG 303 (312)
T KOG0645|consen 295 RLASGGDDG 303 (312)
T ss_pred ceeecCCCc
Confidence 778777644
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.1e-34 Score=304.58 Aligned_cols=271 Identities=26% Similarity=0.460 Sum_probs=241.6
Q ss_pred CCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 000936 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1219)
Q Consensus 10 ~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1219)
..|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|+.+|+++.|++++.+++||+.+|.|++|+..- ..+..+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~ 175 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKII 175 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHh
Confidence 4788999999999999999999999999744443444578999999999999999999999999999999764 444455
Q ss_pred ccCC-CCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 000936 90 LGHL-DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR 168 (1219)
Q Consensus 90 ~~h~-~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~ 168 (1219)
..|. ..|++++|+|+...++++|+||+|+|||....+.-..+.+|.-.|.|+.|||...+|+++|.|..|++||.+++.
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence 5555 899999999999999999999999999999888888999999999999999999999999999999999998865
Q ss_pred cccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCC
Q 000936 169 KKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM 248 (1219)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~ 248 (1219)
.. .++.+|...|..+.|+|++++|++++.|..++++|+++.+. +..+++|.
T Consensus 256 cl---------------------------~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE--l~~~r~Hk 306 (464)
T KOG0284|consen 256 CL---------------------------ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE--LFTYRGHK 306 (464)
T ss_pred hh---------------------------hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH--HHHhhcch
Confidence 43 36788999999999999999999999999999999997665 88999999
Q ss_pred CCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeEEEEe-cCCCCEEEEEEeCCCCEEEEEeC
Q 000936 249 NNVSCVMFHA-KQDIIVSNSEDKSIRVWDVTKRTGVQTFR-REHDRFWILASHPEMNLLAAGHD 310 (1219)
Q Consensus 249 ~~I~~l~~sp-~g~~L~s~s~dg~I~iwdl~~~~~~~~~~-~~~~~i~~l~~sp~~~~la~g~d 310 (1219)
..++++.|+| ...+|.+|+.||.|..|.+...+++..+. .|...||+++|+|-|.+|++|+.
T Consensus 307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN 370 (464)
T ss_pred hhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC
Confidence 9999999999 66789999999999999998656555543 57788999999999999999874
No 32
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2e-31 Score=297.52 Aligned_cols=501 Identities=16% Similarity=0.220 Sum_probs=351.8
Q ss_pred ecccCCCEEEEEEeCCCCEEEEEE--CCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEEC--CCeEEEEEc
Q 000936 5 FETKSNRVKGLSFHSKRPWILASL--HSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD--DYKIKVWNY 80 (1219)
Q Consensus 5 l~~h~~~V~~i~fspdg~~Lasg~--~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~--Dg~I~vWd~ 80 (1219)
+..|..+++|++||++|+|+|+|- ....++||++..-..+..|..|.-.|+|++|+|.++++++.|. |..|.+||+
T Consensus 74 vnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dW 153 (1080)
T KOG1408|consen 74 VNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDW 153 (1080)
T ss_pred ecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhh
Confidence 345778999999999999999984 6678999999998899999999999999999999999998764 678889988
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-------------------------------
Q 000936 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS------------------------------- 129 (1219)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~------------------------------- 129 (1219)
+..-.... ..-...|..++|+.++.|+++++ ...|++|.++.++...
T Consensus 154 r~N~~~as-nkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicA 231 (1080)
T KOG1408|consen 154 RVNSSGAS-NKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICA 231 (1080)
T ss_pred hhcccccc-cccceeEEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccc
Confidence 75433322 22456799999999999999987 5789999887543110
Q ss_pred ----EE--ecC-----------------CCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccc
Q 000936 130 ----VL--TGH-----------------NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNT 186 (1219)
Q Consensus 130 ----~~--~~h-----------------~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 186 (1219)
.+ .|| +....|++.+ .++|++|+.+|.|++|+..+..-....|....+...
T Consensus 232 estfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d---- 305 (1080)
T KOG1408|consen 232 ESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSD---- 305 (1080)
T ss_pred cceEEEecccceeeechhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccc----
Confidence 00 011 0112334443 679999999999999999887765554433222110
Q ss_pred cccccccceEEE--EEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eeEEeecCCCCCeEEEEEccC----
Q 000936 187 DLFGGVDAVVKY--VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAK---- 259 (1219)
Q Consensus 187 ~~~~~~~~~~~~--~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~h~~~I~~l~~sp~---- 259 (1219)
+........+. .-.+.-.....+.|++....+.+...|..+++||+++.+. .....+--|...|+.+.--|-
T Consensus 306 -~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~ 384 (1080)
T KOG1408|consen 306 -TANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHS 384 (1080)
T ss_pred -hhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccC
Confidence 00000000000 1112223456788999999999999999999999987543 124455567777776655441
Q ss_pred -------CCEEEEEeCCCcEEEEeCCCCeeEEEEe-------------------------------------cCCCCEEE
Q 000936 260 -------QDIIVSNSEDKSIRVWDVTKRTGVQTFR-------------------------------------REHDRFWI 295 (1219)
Q Consensus 260 -------g~~L~s~s~dg~I~iwdl~~~~~~~~~~-------------------------------------~~~~~i~~ 295 (1219)
..-++++++|++||+|++..+..-+.++ .....+.+
T Consensus 385 ~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~ 464 (1080)
T KOG1408|consen 385 PTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRA 464 (1080)
T ss_pred cccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEE
Confidence 2358999999999999987633211111 12345899
Q ss_pred EEEeCCCCEEEEEeCC-CeeEEEecCCcc------------eEEe-----cCCEEEEE-eCCeEEEEEecCCcceeeEee
Q 000936 296 LASHPEMNLLAAGHDS-GMIVFKLERERP------------AFAV-----SGDSLFYA-KDRFLRYYEFSTQKDTQVIPI 356 (1219)
Q Consensus 296 l~~sp~~~~la~g~d~-gi~v~~l~~~~~------------~~s~-----~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~ 356 (1219)
++.+|+|++||+|... .+.|+++..-+. .+.. ....|+.+ .|+-|++||....-. .+.++
T Consensus 465 ~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~-l~qtl 543 (1080)
T KOG1408|consen 465 LAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD-LVQTL 543 (1080)
T ss_pred EEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc-hhhhh
Confidence 9999999999999754 467887754332 1111 12345555 899999999876432 22334
Q ss_pred cCCCCCCCCCCCeEEEEccCC--CEEEEEEeCCCCEEEEEEecC-CCCCCCc--cccccccCceeEEEEEeCCeEEEEEc
Q 000936 357 RRPGSTSLNQSPRTLSYSPTE--NAVLICSDVDGGSYELYVIPK-DSIGRGD--SVQDAKKGLGGSAIFIARNRFAVLDK 431 (1219)
Q Consensus 357 ~~~~~~~~~~~i~~l~~spdg--~~llv~~~~~dg~i~l~~~~~-~~~~~~~--~~~~~~~~~i~~~~fs~d~~~l~~~~ 431 (1219)
..+. . .|+++.|--.| ..++. ++ .|..+ +|+... ...+.+. .........+..+...|..++++++.
T Consensus 544 d~HS--s---sITsvKFa~~gln~~Mis-cG-ADksi-mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 544 DGHS--S---SITSVKFACNGLNRKMIS-CG-ADKSI-MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred cccc--c---ceeEEEEeecCCceEEEe-cc-Cchhh-heehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 3333 3 99999998777 33333 33 34344 333322 2222221 01111233577888889999999999
Q ss_pred CCCEEEEEecC-CceeEeeeCCc----ceEEEEEeCCCcEEEEe--CCeEEEEEcCCCeEEEEEec--CCeeEEEEcCCC
Q 000936 432 SSNQVLVKNLK-NEVVKKSILPI----AADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDM 502 (1219)
Q Consensus 432 ~dg~I~Iwdl~-~~~~~~i~~~~----~v~~l~~s~dg~~L~s~--d~~I~l~dl~~~~~l~~~~~--~~v~~v~ws~dg 502 (1219)
.|..|+||+++ ++..+.+++.. ....+...|.|.+++++ |.++.+||..+|+++++..+ .-|+.+.|++|.
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC 695 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC 695 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc
Confidence 99999999999 88888888654 67788899999999885 99999999999999999887 569999999999
Q ss_pred CEEEEEeCCe-EEEEecCccce
Q 000936 503 ESVALLSKHA-IIIASKKLVHQ 523 (1219)
Q Consensus 503 ~~la~~s~~~-i~i~~~~l~~~ 523 (1219)
++|.+.+.++ ||||...++.+
T Consensus 696 kHlISvsgDgCIFvW~lp~~mi 717 (1080)
T KOG1408|consen 696 KHLISVSGDGCIFVWKLPLTMI 717 (1080)
T ss_pred hhheeecCCceEEEEECchhHh
Confidence 9999888877 88998765543
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.4e-32 Score=284.70 Aligned_cols=312 Identities=17% Similarity=0.300 Sum_probs=263.0
Q ss_pred cceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 000936 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1219)
+++|..|++.|.+++.+|+.+++++|+.|..-.||+..+|.....+.+|...|+++.||.+|.+||||+-+|.|+||...
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000936 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (1219)
Q Consensus 82 ~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~v 161 (1219)
++.....+...-..|.-+.|||.+..|+.|+.||.+.+|.+.++...+.+.||+.++++-.|.|+|+.++++..||+|++
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence 99998888767778999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred EECCCCccccccCCc-----cceeeccccc-----------cccccccceEEEEEe--------ecCCCeEE---EEEcC
Q 000936 162 WDIGALRKKTVSPAD-----DILRLSQMNT-----------DLFGGVDAVVKYVLE--------GHDRGVNW---AAFHP 214 (1219)
Q Consensus 162 wd~~~~~~~~~~~~~-----~~~~~~~~~~-----------~~~~~~~~~~~~~~~--------~~~~~V~~---l~~sp 214 (1219)
||..+++........ ..+.....+. .+.+...+.++.... .+...+.+ +.++.
T Consensus 217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 999998765433311 1111111111 111222233333333 33444444 45555
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEE
Q 000936 215 TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFW 294 (1219)
Q Consensus 215 ~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~ 294 (1219)
.-++.++|+-||+|.|||+...+ ++..-.|...|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.+|...|.
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~---~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAAST---LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGIL 372 (399)
T ss_pred ccchhhcccccceEEEEecccch---hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchhee
Confidence 67889999999999999999877 566667889999999998 78899999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEeCCC-eeEEE
Q 000936 295 ILASHPEMNLLAAGHDSG-MIVFK 317 (1219)
Q Consensus 295 ~l~~sp~~~~la~g~d~g-i~v~~ 317 (1219)
.++++|+.++++++++++ ..||+
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEEe
Confidence 999999999999887543 34444
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.6e-31 Score=297.32 Aligned_cols=282 Identities=31% Similarity=0.581 Sum_probs=257.5
Q ss_pred CcceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 000936 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 1 ml~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1219)
++++|.+|.++|++++|+|++++|++++.+|.|++|++.+++....+..|...+..+.|+|+++++++++.||.|++||+
T Consensus 1 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred CchHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 46789999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEE
Q 000936 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1219)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~ 160 (1219)
.+++.+..+..|...|.++.|++++.++++++.|+.|++||+.+++....+..|...+.++.|+|++.++++++.++.|+
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 98888888999999999999999988888888899999999999999999999999999999999998888888899999
Q ss_pred EEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 000936 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (1219)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~ 240 (1219)
+||+++.+. ...+..|...+.++.|+|+++.+++++.++.|++||+...+.
T Consensus 161 i~d~~~~~~---------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-- 211 (289)
T cd00200 161 LWDLRTGKC---------------------------VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-- 211 (289)
T ss_pred EEEcccccc---------------------------ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce--
Confidence 999975432 224557888999999999999999999999999999998775
Q ss_pred EEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCC
Q 000936 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDS 311 (1219)
Q Consensus 241 ~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~ 311 (1219)
+..+..|...+.++.|+|++.++++++.+|.|++|++.++.....+..+...+.+++|+|++.++++++.+
T Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCC
Confidence 66777888999999999999999988889999999999999988888888899999999999988887753
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.7e-30 Score=261.80 Aligned_cols=294 Identities=23% Similarity=0.419 Sum_probs=233.9
Q ss_pred EEEEecccCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCC---CeEEEEE-ccCCCCEEEEEEcCCCCEEEEEECCCeE
Q 000936 43 LIDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYKM---HRCLFTL-LGHLDYIRTVQFHHEYPWIVSASDDQTI 117 (1219)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~-~~~Lasgs~Dg~I~vWd~~~---~~~~~~l-~~h~~~I~~l~fs~d~~~l~s~s~Dg~I 117 (1219)
.++.+++|.++|..++|||- |..|+|||.|+.|++|+... ..+...+ .+|+..|++++|+|.|++|+++|.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 46778899999999999998 89999999999999999874 3444444 4799999999999999999999999999
Q ss_pred EEEECCC--CeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccce
Q 000936 118 RIWNWQS--RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1219)
Q Consensus 118 ~iwd~~s--~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1219)
.||.-.. .+++.++.||...|.|++|+++|++|++++.|+.|-+|.+.... +..
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd------------------------Efe 141 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD------------------------EFE 141 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC------------------------cEE
Confidence 9997553 47889999999999999999999999999999999999987432 233
Q ss_pred EEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000936 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN-ETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRV 274 (1219)
Q Consensus 196 ~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~i 274 (1219)
+.-++.+|...|..+.|||...+|++++.|.+|++|+-. ...-..+.++.+|.+.|.++.|++.|..|++++.|++++|
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence 566899999999999999999999999999999999887 4433347889999999999999999999999999999999
Q ss_pred EeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEE-eCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceee
Q 000936 275 WDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG-HDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (1219)
Q Consensus 275 wdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g-~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~ 353 (1219)
|...+.-. ..|...++.++|. ++ .|+++ .++.+.+|+- ...-..+.
T Consensus 222 w~~~~~~~----~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~---------------------------s~~~d~p~ 268 (312)
T KOG0645|consen 222 WRLYTDLS----GMHSRALYDVPWD-NG-VIASGGGDDAIRLFKE---------------------------SDSPDEPS 268 (312)
T ss_pred eeeccCcc----hhcccceEeeeec-cc-ceEeccCCCEEEEEEe---------------------------cCCCCCch
Confidence 98653211 2355678889998 44 45554 4444444433 22111111
Q ss_pred E---eecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEec
Q 000936 354 I---PIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1219)
Q Consensus 354 ~---~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~ 397 (1219)
. .-....| ...|.++.|+|.+..++++++ +||.+++|.+.
T Consensus 269 ~~l~~~~~~aH---e~dVNsV~w~p~~~~~L~s~~-DDG~v~~W~l~ 311 (312)
T KOG0645|consen 269 WNLLAKKEGAH---EVDVNSVQWNPKVSNRLASGG-DDGIVNFWELE 311 (312)
T ss_pred HHHHHhhhccc---ccccceEEEcCCCCCceeecC-CCceEEEEEec
Confidence 1 1111222 448999999996555565555 78999999874
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.1e-32 Score=279.87 Aligned_cols=301 Identities=25% Similarity=0.463 Sum_probs=260.5
Q ss_pred eEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 000936 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1219)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd 121 (1219)
++.+.+.+|.+.|+|+++.|.+.+|++|+.|++|+|||+.+|+...++.||...|+.+++|+-.+|+++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEe
Q 000936 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1219)
Q Consensus 122 ~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1219)
+...+.++.+.||-+.|.|+..+|.-+.|++|+.|.++||||+++... ..++.
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~---------------------------V~~l~ 274 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS---------------------------VHVLS 274 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce---------------------------EEEec
Confidence 999999999999999999999999999999999999999999998432 45789
Q ss_pred ecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000936 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1219)
Q Consensus 202 ~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~ 281 (1219)
||..+|..+.+.|..+.+++|+.|++|++||+..++. ..++..|...+.+++.+|....+++++.|. |+-|++..+.
T Consensus 275 GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt--~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~ 351 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT--MITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGE 351 (460)
T ss_pred CCCCcceeEEeecCCCceEEecCCceEEEeeeccCce--eEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccc
Confidence 9999999999999999999999999999999999997 888999999999999999999999999885 9999999999
Q ss_pred eEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEe-ecCCC
Q 000936 282 GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP-IRRPG 360 (1219)
Q Consensus 282 ~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~-~~~~~ 360 (1219)
.++.+..|+..+.+++...|+-+ ++|.+ ++.+.+||..+|-..+... +..+|
T Consensus 352 f~~nlsgh~~iintl~~nsD~v~-~~G~d--------------------------ng~~~fwdwksg~nyQ~~~t~vqpG 404 (460)
T KOG0285|consen 352 FLQNLSGHNAIINTLSVNSDGVL-VSGGD--------------------------NGSIMFWDWKSGHNYQRGQTIVQPG 404 (460)
T ss_pred hhhccccccceeeeeeeccCceE-EEcCC--------------------------ceEEEEEecCcCcccccccccccCC
Confidence 99999999999999999888754 44554 4456677777765443331 11222
Q ss_pred CCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCC
Q 000936 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI 401 (1219)
Q Consensus 361 ~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~ 401 (1219)
...-...|.+.+|...|..++.+. .|.+|++|.-+...+
T Consensus 405 Sl~sEagI~as~fDktg~rlit~e--adKtIk~~keDe~aT 443 (460)
T KOG0285|consen 405 SLESEAGIFASCFDKTGSRLITGE--ADKTIKMYKEDEHAT 443 (460)
T ss_pred ccccccceeEEeecccCceEEecc--CCcceEEEecccccC
Confidence 211133788889999999876654 478999998776543
No 37
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.7e-29 Score=288.89 Aligned_cols=475 Identities=14% Similarity=0.218 Sum_probs=360.5
Q ss_pred eecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCC-eE----EEEecccCCCEEEEEEecCC--CEEEEEECCCeEE
Q 000936 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-TL----IDRFDEHDGPVRGVHFHKSQ--PLFVSGGDDYKIK 76 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g-~~----i~~l~~h~~~V~~l~fsp~~--~~Lasgs~Dg~I~ 76 (1219)
.+.+|...|.-+. |-|.+++++..++.+.||+..++ .. +...+...+.|+++ +||.. +.++.|+.+|.+.
T Consensus 109 ~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lq 185 (910)
T KOG1539|consen 109 TTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQ 185 (910)
T ss_pred EeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEE
Confidence 4556666666655 45888999999999999998874 11 11222222227776 46643 4689999999999
Q ss_pred EEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCC-EEEEEEC
Q 000936 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVVSASL 155 (1219)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~-~l~s~s~ 155 (1219)
+||+++++.+++++++...|+++.=+|--..++.|..+|+|.++|+..++.+.+++...+.|++++|..||+ .+++|+.
T Consensus 186 l~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~ 265 (910)
T KOG1539|consen 186 LWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS 265 (910)
T ss_pred EEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC
Confidence 999999999999999999999999999988999999999999999999999999995569999999999995 6677777
Q ss_pred CCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000936 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (1219)
Q Consensus 156 dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~ 235 (1219)
.|.+.+||++..+... .....|.++|....|.|..+.+++.+.|+.+++|=.++
T Consensus 266 ~G~m~~wDLe~kkl~~--------------------------v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 266 NGDMAFWDLEKKKLIN--------------------------VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred CceEEEEEcCCCeeee--------------------------eeeccccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 8999999998755432 24457899999999999999999999999998886553
Q ss_pred --CCeeeEEeecCCCCCeEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCee----EE--EE------------ecCCCCEE
Q 000936 236 --TKAWEVDTLRGHMNNVSCVMFH-AKQDIIVSNSEDKSIRVWDVTKRTG----VQ--TF------------RREHDRFW 294 (1219)
Q Consensus 236 --~~~~~~~~~~~h~~~I~~l~~s-p~g~~L~s~s~dg~I~iwdl~~~~~----~~--~~------------~~~~~~i~ 294 (1219)
+.+..++.-.||..+..++.|. .+|..+.+++.|++.+.+++..... -+ .. ...-.+|.
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence 3323356667999999999998 6889999999999999887643111 00 00 01112344
Q ss_pred EEEEeCC-----CCEEEEE-eCCCeeEEEecCCcc--------------------eEEecCCEEEEE-eCCeEEEEEecC
Q 000936 295 ILASHPE-----MNLLAAG-HDSGMIVFKLERERP--------------------AFAVSGDSLFYA-KDRFLRYYEFST 347 (1219)
Q Consensus 295 ~l~~sp~-----~~~la~g-~d~gi~v~~l~~~~~--------------------~~s~~~~~l~~~-~d~~i~v~d~~~ 347 (1219)
.+++... .+.+++. .+.....|++...+. +.+..|+..+.+ ..|.|.+|++++
T Consensus 400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS 479 (910)
T KOG1539|consen 400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS 479 (910)
T ss_pred eeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc
Confidence 4444332 1222222 233445565544322 567788999998 999999999999
Q ss_pred CcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEE
Q 000936 348 QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFA 427 (1219)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l 427 (1219)
|-....+. +...| ..+|+.++....++.++.+ ..+|.+.+|++.+..... .+ .-...+..+.++.....+
T Consensus 480 Gi~r~sf~-~~~ah---~~~V~gla~D~~n~~~vsa--~~~Gilkfw~f~~k~l~~---~l-~l~~~~~~iv~hr~s~l~ 549 (910)
T KOG1539|consen 480 GIHRKSFG-DSPAH---KGEVTGLAVDGTNRLLVSA--GADGILKFWDFKKKVLKK---SL-RLGSSITGIVYHRVSDLL 549 (910)
T ss_pred Ceeecccc-cCccc---cCceeEEEecCCCceEEEc--cCcceEEEEecCCcceee---ee-ccCCCcceeeeeehhhhh
Confidence 86543332 12223 4499999988777644333 357899999998754211 11 122346778888888888
Q ss_pred EEEcCCCEEEEEecC-CceeEeeeCCc-ceEEEEEeCCCcEEEEe--CCeEEEEEcCCCeEEEEEec-CCeeEEEEcCCC
Q 000936 428 VLDKSSNQVLVKNLK-NEVVKKSILPI-AADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT-PFVKYVVWSNDM 502 (1219)
Q Consensus 428 ~~~~~dg~I~Iwdl~-~~~~~~i~~~~-~v~~l~~s~dg~~L~s~--d~~I~l~dl~~~~~l~~~~~-~~v~~v~ws~dg 502 (1219)
+.+.+|-.|+++|.. .+.++.+.+|. .|+++.|||||++|++. |++|++||+.++.++..+.. .+++++.+||+|
T Consensus 550 a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPng 629 (910)
T KOG1539|consen 550 AIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNG 629 (910)
T ss_pred hhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCC
Confidence 888889999999999 56788888888 99999999999999875 89999999999999998887 789999999999
Q ss_pred CEEEEEeCC--eEEEEe
Q 000936 503 ESVALLSKH--AIIIAS 517 (1219)
Q Consensus 503 ~~la~~s~~--~i~i~~ 517 (1219)
.+||+...+ +||+|.
T Consensus 630 D~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 630 DFLATVHVDQNGIYLWS 646 (910)
T ss_pred CEEEEEEecCceEEEEE
Confidence 999988764 588876
No 38
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.3e-31 Score=270.66 Aligned_cols=280 Identities=19% Similarity=0.358 Sum_probs=248.9
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEEC-CCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDY-RMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~-~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1219)
..+.||.+.|..+.|+|+|.++|+|+.|..|.+|++ ...+....+++|.+.|..+.|.+|++.++++|.|.+|+.||.+
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence 457899999999999999999999999999999994 4556778888999999999999999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEE
Q 000936 82 MHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1219)
Q Consensus 82 ~~~~~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~ 160 (1219)
+|++++.+++|.+.|..+.-+.-|. ++.|+++|+++++||+++..+++++. ..-.++++.|..+++.+++|+-|+.|+
T Consensus 121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ik 199 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIK 199 (338)
T ss_pred cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCcee
Confidence 9999999999999999998665565 66788999999999999998888875 356799999999999999999999999
Q ss_pred EEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--
Q 000936 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-- 238 (1219)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~-- 238 (1219)
+||++... ..+++.||...|+.+..+|+|.++.+-+.|.++++||++.-..
T Consensus 200 vWd~r~~d---------------------------~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 200 VWDLRKND---------------------------GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ 252 (338)
T ss_pred eeccccCc---------------------------ceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCC
Confidence 99997744 4568999999999999999999999999999999999875322
Q ss_pred eeEEeecCCCC----CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeC
Q 000936 239 WEVDTLRGHMN----NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1219)
Q Consensus 239 ~~~~~~~~h~~----~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d 310 (1219)
..+..+.+|.. +...++|+|+++.+.+|+.|..+++||......+..+.+|.+.|..+.|+|...++.+++.
T Consensus 253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc
Confidence 12555666543 4567899999999999999999999999999999999999999999999999998877653
No 39
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.3e-31 Score=314.72 Aligned_cols=279 Identities=31% Similarity=0.512 Sum_probs=251.6
Q ss_pred eeccc-CCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCe--EEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 000936 4 KFETK-SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 4 ~l~~h-~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~--~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1219)
.+.+| ...|+|+.|+|+|+++++++.++.|++|+..+++ ....+.+|...|++++|+|++.++++++.|++|+|||+
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 34454 7889999999999999999999999999998777 77777899999999999999999999999999999999
Q ss_pred -CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeE
Q 000936 81 -KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTV 159 (1219)
Q Consensus 81 -~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I 159 (1219)
..+..++++.+|...|++++|+|+++.+++|+.|++|+|||+.+++++..+.+|.+.|.+++|+++++++++++.||.|
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i 312 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTI 312 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccE
Confidence 5669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCC--CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 000936 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR--GVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (1219)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~ 237 (1219)
++||+.++... +...+.++.. .++++.|+|++.++++++.|+.+++||+....
T Consensus 313 ~vwd~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 313 RVWDLETGSKL-------------------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred EEEECCCCcee-------------------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 99999986632 1113334443 59999999999999999999999999999888
Q ss_pred eeeEEeecCCCCC---eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC-CCCEEEEEEeCCCCEEEEEe
Q 000936 238 AWEVDTLRGHMNN---VSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE-HDRFWILASHPEMNLLAAGH 309 (1219)
Q Consensus 238 ~~~~~~~~~h~~~---I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~-~~~i~~l~~sp~~~~la~g~ 309 (1219)
. +....+|... +.+...++.+.++++|+.|+.|.+||+.++..++.+..| ...+..++++|..+++++++
T Consensus 368 ~--~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 368 S--VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred c--eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence 7 7788888775 344455779999999999999999999999999999999 88899999999999999886
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-31 Score=260.62 Aligned_cols=282 Identities=21% Similarity=0.353 Sum_probs=254.1
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1219)
+.|..|.++|..+.|+-||+|.++++.|.+|++|+...|.+++++.+|...|..++.+.|+..|++|+.|..|.+||+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEE
Q 000936 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR--TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1219)
Q Consensus 83 ~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~--~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~ 160 (1219)
|+.++.+.+|.+.|..+.|+.+...+++|+.|.++++||.++. ++++.+......|.++..+ +..|++||.||++|
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvR 168 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVR 168 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEE
Confidence 9999999999999999999999999999999999999999854 6788888888899998886 67899999999999
Q ss_pred EEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 000936 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (1219)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~ 240 (1219)
.||++.++... .-...+|++++|+++++..+.++-|+++++.|-.+++.
T Consensus 169 tydiR~G~l~s-----------------------------Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl-- 217 (307)
T KOG0316|consen 169 TYDIRKGTLSS-----------------------------DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL-- 217 (307)
T ss_pred EEEeecceeeh-----------------------------hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHH--
Confidence 99998865432 22456899999999999999999999999999999998
Q ss_pred EEeecCCCCCeE--EEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCC-EEEEEEeCCCCEEEEEeCCCeeEEE
Q 000936 241 VDTLRGHMNNVS--CVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR-FWILASHPEMNLLAAGHDSGMIVFK 317 (1219)
Q Consensus 241 ~~~~~~h~~~I~--~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~-i~~l~~sp~~~~la~g~d~gi~v~~ 317 (1219)
+....+|.+.-. ..+++.....+++|++||.|.+||+.....+..+..+... +..++++|...-+.++...+...|.
T Consensus 218 L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 218 LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceecee
Confidence 778888887543 4467777889999999999999999999999998888777 8899999988877777776766664
No 41
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.3e-30 Score=258.97 Aligned_cols=273 Identities=18% Similarity=0.356 Sum_probs=238.6
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCe--EEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~--~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1219)
++++-..+.|..+...||++.||+++ .-.|++||++++. .+.+|++|...|+++.|..+|+++++||+||+++|||+
T Consensus 34 rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdl 112 (311)
T KOG0315|consen 34 RTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDL 112 (311)
T ss_pred EEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEec
Confidence 34555667899999999999999987 5679999998774 68999999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEecCCCEEEEEECCCeE
Q 000936 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLVVSASLDQTV 159 (1219)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~I 159 (1219)
+...+.+.+. |..+|.++..+|+..-|++|..+|.|++||+.+..+...+. .....|.++...|+|.+++.+...|..
T Consensus 113 R~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 113 RSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred cCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccE
Confidence 9876666665 78999999999999999999999999999999887766653 345679999999999999999999999
Q ss_pred EEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 000936 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (1219)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~ 239 (1219)
.+|++-+..... ....+..+..|.+.+..+.+||++++|++++.|.+++||+..+. ..
T Consensus 192 yvW~l~~~~~~s---------------------~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~k 249 (311)
T KOG0315|consen 192 YVWRLLNHQTAS---------------------ELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FK 249 (311)
T ss_pred EEEEccCCCccc---------------------cceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-ee
Confidence 999997733322 12234468889999999999999999999999999999999988 22
Q ss_pred eEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEe
Q 000936 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASH 299 (1219)
Q Consensus 240 ~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~s 299 (1219)
....+.+|...+..++||.||++|++++.|+.+++|++..++.+..+.+|.....+++..
T Consensus 250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 366788999999999999999999999999999999999999999999988877776643
No 42
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=100.00 E-value=6.7e-29 Score=269.92 Aligned_cols=651 Identities=16% Similarity=0.196 Sum_probs=406.6
Q ss_pred ccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEE-e-------cCCCEEEEEECCCeEEEE
Q 000936 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHF-H-------KSQPLFVSGGDDYKIKVW 78 (1219)
Q Consensus 7 ~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~f-s-------p~~~~Lasgs~Dg~I~vW 78 (1219)
-|+..|.|+.|+.....+.++ .|..+.+|.--+........-.+.-|....+ - .....|+.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 477788999999887766655 5666666654333322222211111111111 1 122378889999999998
Q ss_pred EcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCe
Q 000936 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQT 158 (1219)
Q Consensus 79 d~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~ 158 (1219)
+ +.++.-..+..|.+.+.+-.|+|||.-|++++.||.|++|. ++|-...++.....+|.|++|.|+.+.++.+- .+.
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h 167 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGH 167 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCe
Confidence 8 56777788899999999999999999999999999999998 66666666666778899999999997776664 345
Q ss_pred EEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 000936 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1219)
Q Consensus 159 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~ 238 (1219)
+.+=.+.... .......|++-|.++.|++..+++++|++|-..++||-....
T Consensus 168 ~~IKpL~~n~---------------------------k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~- 219 (737)
T KOG1524|consen 168 ISIKPLAANS---------------------------KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN- 219 (737)
T ss_pred EEEeeccccc---------------------------ceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc-
Confidence 5554443211 233678899999999999999999999999999999987665
Q ss_pred eeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEe
Q 000936 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1219)
Q Consensus 239 ~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l 318 (1219)
+..-..|..+|++++|.|+ +.++.+|. .+.|+= +...+.|..++||+||..+++|+..|.+++..
T Consensus 220 --Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 220 --LFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred --cccCChhccceeeeeeccc-cceeeeee-eeeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 6677789999999999999 66666654 345521 12346688999999999999999999887654
Q ss_pred cCCcceEEecCCEEEEE-eCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEec
Q 000936 319 ERERPAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1219)
Q Consensus 319 ~~~~~~~s~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~ 397 (1219)
--+.... .++.-++. ....|.+-|+.++.. ..+.++. .+...+.+- .+++++++ ..+.+|.-.
T Consensus 285 ~ieq~l~--~~n~~~t~~~r~~I~vrdV~~~v~-d~LE~p~--------rv~k~sL~Y--~hLvvaTs---~qvyiys~k 348 (737)
T KOG1524|consen 285 AIEQQLV--SGNLKATSKSRKSITVRDVATGVQ-DILEFPQ--------RVVKFSLGY--GHLVVATS---LQVYIYSEK 348 (737)
T ss_pred eehhhhh--hccceeEeeccceEEeehhhhhHH-HHhhCcc--------ceeeeeece--eEEEEEec---cEEEEEecC
Confidence 3332211 11222222 566777777776544 2222221 444444332 35566555 466666544
Q ss_pred CCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCCceeEeeeCCcc------eEEEEEeCCCcEEEEe-
Q 000936 398 KDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIA------ADAIFYAGTGNLLCRA- 470 (1219)
Q Consensus 398 ~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~i~~~~~------v~~l~~s~dg~~L~s~- 470 (1219)
...+.. ..++....+. +.--...-|++.. ..+|.+|..+++.......|.. -..+..+.| .|+..
T Consensus 349 nwntpi---iidgre~tr~-lieq~ek~fli~d--gsSi~lytyegR~~~np~~Pg~~~dlL~~rtlsLand--tLaird 420 (737)
T KOG1524|consen 349 NWNTPI---IIDGREDTRN-LIEQGEKYFLILD--GSSIWLYTYEGRLHLNPRYPGSQIDLLTWRTLSLAND--TLAIRD 420 (737)
T ss_pred CccCcE---EEeccccchh-HhhhhhhheEEec--CcEEEEEEecCceecCCCCCCcccccccceeeecccc--eEEeec
Confidence 333221 1222222111 1111122344443 3678888888777666665551 122333332 44443
Q ss_pred ---CCeEEEEEc-CCCeEEEEEec----CCeeEEEE----cCCCCEEEEEeCCe-EEEEe--------------------
Q 000936 471 ---EDRVVIFDL-QQRLVLGDLQT----PFVKYVVW----SNDMESVALLSKHA-IIIAS-------------------- 517 (1219)
Q Consensus 471 ---d~~I~l~dl-~~~~~l~~~~~----~~v~~v~w----s~dg~~la~~s~~~-i~i~~-------------------- 517 (1219)
...+.+||. .+|+....-.. ..+..++. .++.+.+++..+++ ++|..
T Consensus 421 ~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGTmVhtL 500 (737)
T KOG1524|consen 421 NADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGTMVHTL 500 (737)
T ss_pred CCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhhhhhhh
Confidence 356888988 77776543331 22222332 23456666666644 44432
Q ss_pred ---cCccceeeeeeeeEEeeeEEecCCeEEEEcCCeeeEEecCCceeEEEeccccEEEEEEeCCEEEEEecCCceEEEEe
Q 000936 518 ---KKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVI 594 (1219)
Q Consensus 518 ---~~l~~~~~~~e~~~iks~~wd~~~~~iy~t~~~iky~l~~g~~~~i~~~~~~~~l~~~~~~~l~~l~~~~~~~~~~l 594 (1219)
.....+|.++++- -.+|-.++ ..|...+.+.-.+..-| ...+.+.+.|+++.++.+.....+|...-+.+
T Consensus 501 awndttNiLcglqDt~---fsVWy~pn-~vyvDrdiLpkTlierd---t~efgKnpqIvsFvgNqvtirrsdG~LlpisV 573 (737)
T KOG1524|consen 501 AWNDTTNILCGLQDTC---FSVWYYPN-EVYVDRDILPKTLIERD---TTEFGKNPQIVSFVGNQVTIRRSDGALLPISV 573 (737)
T ss_pred hhccccceeeeeccce---EEEEEcCC-cceecccccchhheecc---hhhccCCcceeeeeccEEEEEeccCceEeeec
Confidence 1112222222211 11221111 01111111111111111 12234456778888888887777887777666
Q ss_pred CchhHhHHHHHhccCHHHHHHhhhcCcccchhHHHHHHhCCChhhhhccccCcchhhhHHhhcCCHHHHHHHHHHhCChh
Q 000936 595 DATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKD 674 (1219)
Q Consensus 595 d~~e~~f~~~l~~~~~~~a~~~i~~~~~~~~~i~~~l~~~g~~e~Al~~~~d~~~rf~lal~~g~~~~A~~~a~~l~~~~ 674 (1219)
++.- +.+. .++..+.|+.|++.|+...+..
T Consensus 574 ~py~-------------~iL~-------------------------------------e~~sssKWeqavRLCrfv~eqT 603 (737)
T KOG1524|consen 574 NPYP-------------EILH-------------------------------------EYLSSSKWEQAVRLCRFVQEQT 603 (737)
T ss_pred cccH-------------HHHH-------------------------------------HHhccchHHHHHHHHHhccchH
Confidence 6521 1110 1333566999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHHHHHHcCChhHHHHHHHhcCCHHHHHHHHHHc
Q 000936 675 HWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESA 754 (1219)
Q Consensus 675 ~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~~~~~~~~~~~~~~al~lgd~~eai~i~~~~ 754 (1219)
+|..||-.|....+..++|.+|..+.+.|+++++.-+..-.+|..+|+.+.-..|....+-.+.+.-|.+++|+.+-++.
T Consensus 604 MWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~~l~~G~~~eAe~iLl~~gl~~qav~lni~m 683 (737)
T KOG1524|consen 604 MWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAENSLMLGRMLEAETILLHGGLIEQAVGLNIRM 683 (737)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHHHHHhccchhhhHHHHhcchHHHhhhhhhhh
Confidence 99999999999999999999999999999999998887777888888776666665555555555556666666666666
Q ss_pred CCChHHHHHHHhcCCh-----HHHHHHHHHcCCCCC
Q 000936 755 GHLPLAYITASVHGLQ-----DVAERLAAELGDNVP 785 (1219)
Q Consensus 755 g~~~~A~~la~~~g~~-----~~a~~l~~~~~~~~~ 785 (1219)
-.|..|++++.+|..+ ..-.+.++.++.+|.
T Consensus 684 ~nW~RALEl~~K~K~~v~~Vl~yR~KyLk~~g~~Et 719 (737)
T KOG1524|consen 684 HNWRRALELSQKHKELVPRVLQYRRKYLKALGREET 719 (737)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccc
Confidence 6666666666665542 122344455555443
No 43
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.8e-31 Score=304.26 Aligned_cols=244 Identities=25% Similarity=0.503 Sum_probs=220.0
Q ss_pred EecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe-------------------------------EEEEEccCCC
Q 000936 46 RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR-------------------------------CLFTLLGHLD 94 (1219)
Q Consensus 46 ~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~-------------------------------~~~~l~~h~~ 94 (1219)
++......++|..|++++..||.|..|..|++|.+...+ ...++.||.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 344445668999999999999999999999999886321 2335779999
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccC
Q 000936 95 YIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSP 174 (1219)
Q Consensus 95 ~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~ 174 (1219)
+|....|+|+.++|+++|.|+++|+|.+.+..++..++||..+|+.+.|+|.|-+++|+|.|++-++|.....+.
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P----- 527 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP----- 527 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876332
Q ss_pred CccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEE
Q 000936 175 ADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254 (1219)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l 254 (1219)
..++.+|...|.|+.|||+..++++|+.|.+|++||..++.. ++.+.||.++|+++
T Consensus 528 ----------------------lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~--VRiF~GH~~~V~al 583 (707)
T KOG0263|consen 528 ----------------------LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS--VRIFTGHKGPVTAL 583 (707)
T ss_pred ----------------------hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE--EEEecCCCCceEEE
Confidence 336789999999999999999999999999999999999997 88999999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEe-CCCeeEEEe
Q 000936 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH-DSGMIVFKL 318 (1219)
Q Consensus 255 ~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~-d~gi~v~~l 318 (1219)
+|||+|.+|++|++||.|.+||+.++..+..+.+|.+.+.++.|+.+|..||+|+ |+.+.+|++
T Consensus 584 ~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 584 AFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred EEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 9999999999999999999999999999999999999999999999999999886 333444443
No 44
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=9.4e-30 Score=266.45 Aligned_cols=332 Identities=16% Similarity=0.244 Sum_probs=280.7
Q ss_pred eEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 000936 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1219)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd 121 (1219)
..+.+|..|..+|.+++.+|+.++++|||.|..-.+|++.++.....+.+|++.|+++.|+.+|.+|++|+.+|.|+||.
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEe
Q 000936 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1219)
Q Consensus 122 ~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1219)
..++.....+...-..+.-+.|||.+..|+.|+.||.+.+|.+.+.. ....+.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~---------------------------~~kv~~ 187 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA---------------------------LCKVMS 187 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc---------------------------eeeEec
Confidence 99999988887667778889999999999999999999999997632 344788
Q ss_pred ecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCC-CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000936 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH-MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1219)
Q Consensus 202 ~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h-~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~ 280 (1219)
||..++++-.|.|+|+.++++..||+|++|+..++.+ +..+.+. ....+++.++..+..++.|+.++.+++-+..++
T Consensus 188 Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p--~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg 265 (399)
T KOG0296|consen 188 GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP--LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG 265 (399)
T ss_pred CCCCCcccccccCCCceEEEEecCceEEEEecCCCce--eEEecccccCcCCccccccccceeEeccCCccEEEEccccc
Confidence 9999999999999999999999999999999999987 5555422 345678899999999999999999999998888
Q ss_pred eeEEEEec--------CCCC---EEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCc
Q 000936 281 TGVQTFRR--------EHDR---FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQK 349 (1219)
Q Consensus 281 ~~~~~~~~--------~~~~---i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~ 349 (1219)
+.+..... +... +-.+.++..-.+.|+|+ -||+|.+||+...+
T Consensus 266 KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~--------------------------vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 266 KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS--------------------------VDGTIAIYDLAAST 319 (399)
T ss_pred eEEEecCCCCccccccchhhhhhhhhcccccccchhhccc--------------------------ccceEEEEecccch
Confidence 87766552 2222 33344444555666666 58899999998866
Q ss_pred ceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEE
Q 000936 350 DTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVL 429 (1219)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~ 429 (1219)
....... ...|..+.|-+ ..+++.++. +|.++.|+... ++++....+|...|..++++|+.+++++
T Consensus 320 ~R~~c~h--------e~~V~~l~w~~-t~~l~t~c~--~g~v~~wDaRt---G~l~~~y~GH~~~Il~f~ls~~~~~vvT 385 (399)
T KOG0296|consen 320 LRHICEH--------EDGVTKLKWLN-TDYLLTACA--NGKVRQWDART---GQLKFTYTGHQMGILDFALSPQKRLVVT 385 (399)
T ss_pred hheeccC--------CCceEEEEEcC-cchheeecc--CceEEeeeccc---cceEEEEecCchheeEEEEcCCCcEEEE
Confidence 5444432 23899999998 556665544 78999999874 6666678999999999999999999999
Q ss_pred EcCCCEEEEEecC
Q 000936 430 DKSSNQVLVKNLK 442 (1219)
Q Consensus 430 ~~~dg~I~Iwdl~ 442 (1219)
++.|++.+||+..
T Consensus 386 ~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 386 VSDDNTALVFEVP 398 (399)
T ss_pred ecCCCeEEEEecC
Confidence 9999999999864
No 45
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.1e-27 Score=266.94 Aligned_cols=483 Identities=13% Similarity=0.145 Sum_probs=351.6
Q ss_pred cCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeE-EEEecc-cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeE
Q 000936 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL-IDRFDE-HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC 85 (1219)
Q Consensus 8 h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~-i~~l~~-h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~ 85 (1219)
....|++++|+.+.+.||++-.+|.|-||++..+=. ...+.+ .+..|.+++|++.+ .|.+.+.+|.|.-||+.+++.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCce
Confidence 467899999999999999999999999999987633 334444 45679999999555 688888899999999999999
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE--EEecCCCCeEEEEEecCCCEEEEEECCCeEEEEE
Q 000936 86 LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS--VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163 (1219)
Q Consensus 86 ~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~--~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd 163 (1219)
...+....+.|++++.+|.+..++.|++||.+...+...++... .+....+.|.++.|+|++..+++|+.||.|++||
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 99999999999999999999999999999988888887776654 3344568999999999999999999999999999
Q ss_pred CCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEe
Q 000936 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 243 (1219)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~ 243 (1219)
...+........ + +-..-.+...-|.++.|-.++ .|++|...|+|.+||...+.. +..
T Consensus 183 ~~~~~t~~~~~~---------~----------~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTL--iqS 240 (691)
T KOG2048|consen 183 VKSGQTLHIITM---------Q----------LDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTL--IQS 240 (691)
T ss_pred cCCCceEEEeee---------c----------ccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcch--hhh
Confidence 988654331000 0 000011123346677777654 799999999999999999987 888
Q ss_pred ecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee----EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEec
Q 000936 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG----VQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLE 319 (1219)
Q Consensus 244 ~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~----~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~ 319 (1219)
...|...|.+++..++++++++++.|+.|.-|...+... ......|...+.+++..++ .+.+|..+..+.+...
T Consensus 241 ~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 241 HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 889999999999999999999999999999998776543 2223456677899998887 5666655555444333
Q ss_pred CCc-------c-------eEEe-cCCEEEEE-eCCeEEEEEecCC------cceeeEeecCCCCCCCCCCCeEEEEccCC
Q 000936 320 RER-------P-------AFAV-SGDSLFYA-KDRFLRYYEFSTQ------KDTQVIPIRRPGSTSLNQSPRTLSYSPTE 377 (1219)
Q Consensus 320 ~~~-------~-------~~s~-~~~~l~~~-~d~~i~v~d~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~spdg 377 (1219)
++. + ..+. ..++++.. ....+.+|.+.+. ....++.+....+ . .|.+-+.||+|
T Consensus 319 ~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~-~---nIs~~aiSPdg 394 (691)
T KOG2048|consen 319 REFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEK-E---NISCAAISPDG 394 (691)
T ss_pred cccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCc-c---ceeeeccCCCC
Confidence 221 1 1111 22344444 6778888887765 2222333333222 2 78899999999
Q ss_pred CEEEEEEeCCCCEEEEEEecCCCCCCCcc--ccccccCceeEEEEEeCCeEEEEEc-CCCEEEEEecCCc---eeEeeeC
Q 000936 378 NAVLICSDVDGGSYELYVIPKDSIGRGDS--VQDAKKGLGGSAIFIARNRFAVLDK-SSNQVLVKNLKNE---VVKKSIL 451 (1219)
Q Consensus 378 ~~llv~~~~~dg~i~l~~~~~~~~~~~~~--~~~~~~~~i~~~~fs~d~~~l~~~~-~dg~I~Iwdl~~~---~~~~i~~ 451 (1219)
+.+++..- ...+||.+.......... ......-....+.|+-|+..++..+ ....+.++++... .+..+..
T Consensus 395 ~~Ia~st~---~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~ 471 (691)
T KOG2048|consen 395 NLIAISTV---SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQS 471 (691)
T ss_pred CEEEEeec---cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcccc
Confidence 99988776 678899887654211110 1111222456788888876655555 6788888888733 3333333
Q ss_pred Cc---ceEEEEEeCCCcEEEE--eCCeEEEEEcCCCeEEEEEec--CCeeEEEEcCC--CCEEEEEeCCeEEEEecCccc
Q 000936 452 PI---AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT--PFVKYVVWSND--MESVALLSKHAIIIASKKLVH 522 (1219)
Q Consensus 452 ~~---~v~~l~~s~dg~~L~s--~d~~I~l~dl~~~~~l~~~~~--~~v~~v~ws~d--g~~la~~s~~~i~i~~~~l~~ 522 (1219)
.. .|..|..|++|.+++. +.+.|.+|++.+++.-..... ..++.+.++|. ++.++..+++.++-++.+..+
T Consensus 472 ~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 472 QAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred ccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 32 8999999999999965 579999999999875443311 67899999963 355666667778887764443
No 46
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.1e-31 Score=273.72 Aligned_cols=289 Identities=23% Similarity=0.416 Sum_probs=260.2
Q ss_pred EEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000936 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122 (1219)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~ 122 (1219)
+...+.+|..+|+.+-|+|+-..++++++|++|++||..++++...++||.+.+..+.|+..|+++++++.|-.+.+||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 44556689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEe
Q 000936 123 QS-RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1219)
Q Consensus 123 ~s-~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1219)
++ .++++.+.+|.+.|.++.|-|.|+++++++.|.+|+.|++.++. +..++.
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~---------------------------cv~t~~ 232 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY---------------------------CVKTFP 232 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce---------------------------eEEecc
Confidence 86 67788889999999999999999999999999999999998854 456888
Q ss_pred ecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccC---------------CCEEEEE
Q 000936 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK---------------QDIIVSN 266 (1219)
Q Consensus 202 ~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~---------------g~~L~s~ 266 (1219)
+|...|..+..+.||.++++++.|.++++|-+.+..+ ...++.|..+|.+++|.|. ++++.++
T Consensus 233 ~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~--k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQC--KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchh--hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence 9999999999999999999999999999999999876 6788999999999999763 2589999
Q ss_pred eCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEec
Q 000936 267 SEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFS 346 (1219)
Q Consensus 267 s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~ 346 (1219)
+.|++|++||+.++.++.++.+|.+.|..++|+|.|++|++..| |+++++||+.
T Consensus 311 SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD--------------------------Dktlrvwdl~ 364 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD--------------------------DKTLRVWDLK 364 (406)
T ss_pred cccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec--------------------------CCcEEEEEec
Confidence 99999999999999999999999999999999999999999885 7899999999
Q ss_pred CCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEE
Q 000936 347 TQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1219)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~ 395 (1219)
+.+...... .+.+ .++++.|..+..+ +++|+-+..+++|.
T Consensus 365 ~~~cmk~~~--ah~h-----fvt~lDfh~~~p~--VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 365 NLQCMKTLE--AHEH-----FVTSLDFHKTAPY--VVTGSVDQTVKVWE 404 (406)
T ss_pred cceeeeccC--CCcc-----eeEEEecCCCCce--EEeccccceeeeee
Confidence 988754433 3333 8899999988774 45566678888886
No 47
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.2e-31 Score=290.16 Aligned_cols=282 Identities=18% Similarity=0.287 Sum_probs=247.1
Q ss_pred CcceecccCCCEEEEEEeC-CCCEEEEEECCCeEEEEECCC-CeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEE
Q 000936 1 MLTKFETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRM-GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (1219)
Q Consensus 1 ml~~l~~h~~~V~~i~fsp-dg~~Lasg~~dg~I~iWd~~~-g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vW 78 (1219)
|+..+.||+..|+++.|.| .+.+|++++.|+.|+||++.. ++++++|.+|..+|+.++|+++|..|.|++.|+.|++|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 4678999999999999999 899999999999999999876 89999999999999999999999999999999999999
Q ss_pred EcCCCeEEEEEccCCCCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCC
Q 000936 79 NYKMHRCLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (1219)
Q Consensus 79 d~~~~~~~~~l~~h~~~I~~l~fs~d~-~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg 157 (1219)
|+++|+++..+. ....+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|..+++.+.|+
T Consensus 286 DtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 286 DTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred ccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc
Confidence 999999999986 45678999999999 6899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 000936 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (1219)
Q Consensus 158 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~ 237 (1219)
++++|+.+..-.. ++....+.....++..+|++++++.-+.|+.|.++.+...-
T Consensus 365 s~riWe~~~~v~i--------------------------k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 365 SVRIWENRIPVPI--------------------------KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred cEEEEEcCCCccc--------------------------hhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 9999998764322 22334455567789999999999999999999999865432
Q ss_pred e-eeEEeecCCCC--CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCC-EEEEEe
Q 000936 238 A-WEVDTLRGHMN--NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMN-LLAAGH 309 (1219)
Q Consensus 238 ~-~~~~~~~~h~~--~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~-~la~g~ 309 (1219)
. .....+.+|.. --..+.|||||.+|++|+.||.+.+||.++-+.+..++.|.+.+..+.|+|... .+|+++
T Consensus 419 r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~ 494 (503)
T KOG0282|consen 419 RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCG 494 (503)
T ss_pred ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecc
Confidence 1 11345567654 356789999999999999999999999999999999999999999999999654 455544
No 48
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.5e-28 Score=270.42 Aligned_cols=649 Identities=13% Similarity=0.122 Sum_probs=418.1
Q ss_pred CCEEEEEEeCCCCEEEEEECCCeEEEEECCCCe---------------EEEEecccCCCEEEEEEecCCCEEEEEECCCe
Q 000936 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT---------------LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYK 74 (1219)
Q Consensus 10 ~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~---------------~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~ 74 (1219)
....|++|+....++|+|+.||.++|-.+.+.+ .-+++++|++.|.-+.|+.+.+.|-|+..+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 467899999999999999999999999876431 22467899999999999999999999999999
Q ss_pred EEEEEcCCCeEEEEE--ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EEecCCCCeEEEEEecCCCEEE
Q 000936 75 IKVWNYKMHRCLFTL--LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS-VLTGHNHYVMCASFHPKEDLVV 151 (1219)
Q Consensus 75 I~vWd~~~~~~~~~l--~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~-~~~~h~~~V~~l~~sp~~~~l~ 151 (1219)
|.||-+-.|.....+ ....+.|.+++|+.||..+.....||.|.+=.++..+.-. .+++ .....+.|++|...++
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQAL 172 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHH
Confidence 999988766543322 2356689999999999999999999999887765433211 2222 2244688999999888
Q ss_pred EEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEE--------cCCCCEEEEEe
Q 000936 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAF--------HPTLPLIVSGA 223 (1219)
Q Consensus 152 s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~--------sp~g~~l~sg~ 223 (1219)
.+-..|.+.++|..+.-....... ..+.. .-.+......|..+.| -|+.+.++++.
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~-c~Vn~---------------tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKD-CEVNG---------------TGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhc-eEEee---------------eeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 888899999999876432211000 00000 0011111122334444 25888999999
Q ss_pred CCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCC---------cEEEEeCCCCeeEEEEecCCCCEE
Q 000936 224 DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK---------SIRVWDVTKRTGVQTFRREHDRFW 294 (1219)
Q Consensus 224 ~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg---------~I~iwdl~~~~~~~~~~~~~~~i~ 294 (1219)
.+|.+.+..-.+.... +..- ..-.+....|+++|..|++++.+. .|.+|. .-|..+.+++.....|+
T Consensus 237 ~nGr~QiMR~eND~~P-vv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It 312 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDPEP-VVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCIT 312 (1189)
T ss_pred cCceehhhhhcCCCCC-eEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceee
Confidence 9999998876554431 2222 225688999999999999988643 466665 45788889999999999
Q ss_pred EEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEE------eCCeEEEEEecCCccee-----e----------
Q 000936 295 ILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA------KDRFLRYYEFSTQKDTQ-----V---------- 353 (1219)
Q Consensus 295 ~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~------~d~~i~v~d~~~~~~~~-----~---------- 353 (1219)
+++|-..|-.+|.+-++-+++-++..+ -.+..-.+.+++. -...|.+||..+.+... .
T Consensus 313 ~lsWEg~gLriA~AvdsfiyfanIRP~-ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehC 391 (1189)
T KOG2041|consen 313 GLSWEGTGLRIAIAVDSFIYFANIRPE-YKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHC 391 (1189)
T ss_pred eeEEcCCceEEEEEecceEEEEeeccc-ceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccE
Confidence 999999999999888776655444332 2344444444444 22356677776533210 0
Q ss_pred -Eee-------------------------cCCCCCCCCCC---CeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCC
Q 000936 354 -IPI-------------------------RRPGSTSLNQS---PRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRG 404 (1219)
Q Consensus 354 -~~~-------------------------~~~~~~~~~~~---i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~ 404 (1219)
+.. ...|. ++... |+-.-..-++..+++++. ..+.+|..........
T Consensus 392 vL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT-~lD~kytdirP~Fv~vn~~~vviAS~---e~~~iWhy~~pK~~s~ 467 (1189)
T KOG2041|consen 392 VLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGT-SLDYKYTDIRPKFVCVNGICVVIASE---ERYFIWHYVLPKFNSV 467 (1189)
T ss_pred EEEeccccCCCcchhhhhcccceEEEeeecccCC-cCCCCcceeeeeEEEecceEEEEecc---ccEEEEEEeccchhhh
Confidence 000 00111 00111 111112223445555444 4677887532211000
Q ss_pred c-----------------------------cccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCCc-eeEeeeCCcc
Q 000936 405 D-----------------------------SVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE-VVKKSILPIA 454 (1219)
Q Consensus 405 ~-----------------------------~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~-~~~~i~~~~~ 454 (1219)
. ....+..++|..++.+ .+++..+...|.|.-+++.+. ...+......
T Consensus 468 l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~~n~~ 545 (1189)
T KOG2041|consen 468 LAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYPVNPS 545 (1189)
T ss_pred hhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccccCch
Confidence 0 1222334455555544 578888887888998888844 4444444458
Q ss_pred eEEEEEeCCCcEEEEeC--CeEEEEEcC---CCeEEEEEec---CCeeEEEEcCCC-CEEEEEeCCeEEEEecCccc-ee
Q 000936 455 ADAIFYAGTGNLLCRAE--DRVVIFDLQ---QRLVLGDLQT---PFVKYVVWSNDM-ESVALLSKHAIIIASKKLVH-QC 524 (1219)
Q Consensus 455 v~~l~~s~dg~~L~s~d--~~I~l~dl~---~~~~l~~~~~---~~v~~v~ws~dg-~~la~~s~~~i~i~~~~l~~-~~ 524 (1219)
+..+..+.+.+.++.-| |.+.+.|+. +|..+..+.. ..|..+.|..|+ .++|...+..++|+..+-.. ..
T Consensus 546 ~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgndpeEp~ 625 (1189)
T KOG2041|consen 546 IYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPEEPS 625 (1189)
T ss_pred heeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCcCccccc
Confidence 88999998888886653 777777775 3444443322 678888998876 45677777888888744110 00
Q ss_pred eeeeeeEEeeeEEecCCeEEEEcCCeeeEEecCCceeEEEeccccEEEEEEeCCEEEEEecCC--ceEEEEeCchhHhHH
Q 000936 525 TLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDG--KNRAIVIDATEYIFK 602 (1219)
Q Consensus 525 ~~~e~~~iks~~wd~~~~~iy~t~~~iky~l~~g~~~~i~~~~~~~~l~~~~~~~l~~l~~~~--~~~~~~ld~~e~~f~ 602 (1219)
++.. |++.-.+. .+.+|.-+.+. ++.+. +...+.+
T Consensus 626 s~sG------------------------yIc~FedL----------eitsVlld~Il-~~pE~pnk~~ii~~-------- 662 (1189)
T KOG2041|consen 626 SVSG------------------------YICLFEDL----------EITSVLLDKIL-LTPENPNKTCIIEV-------- 662 (1189)
T ss_pred cccc------------------------eEEEeece----------EEEEEEHhhHh-cCcCCCCcceEEEE--------
Confidence 0000 11100000 01111000000 00000 0000000
Q ss_pred HHHhccCHHHHHHhhhcCcccchhHHHHHHhCCChhhhhccccCcchhhhHHhhcCCHHHHHHHHHHhCChhHHHHHHHH
Q 000936 603 LSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVE 682 (1219)
Q Consensus 603 ~~l~~~~~~~a~~~i~~~~~~~~~i~~~l~~~g~~e~Al~~~~d~~~rf~lal~~g~~~~A~~~a~~l~~~~~w~~La~~ 682 (1219)
.-+.++++.. .++.-.+++|.++++...+|++|+.||++
T Consensus 663 ---~ikslrD~~~--------------------------------------Lve~vgledA~qfiEdnPHprLWrllAe~ 701 (1189)
T KOG2041|consen 663 ---MIKSLRDVMN--------------------------------------LVEAVGLEDAIQFIEDNPHPRLWRLLAEY 701 (1189)
T ss_pred ---EehhhhhHHH--------------------------------------HHHHhchHHHHHHHhcCCchHHHHHHHHH
Confidence 0111111111 22223388999999999999999999999
Q ss_pred HHHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHHHHHHcCChhHHHHHHHhcCCHHHHHHHHHHcCCChHHHH
Q 000936 683 ALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYI 762 (1219)
Q Consensus 683 al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~~~~~~~~~~~~~~al~lgd~~eai~i~~~~g~~~~A~~ 762 (1219)
|+....++.||.+|.+++||.++-++ .+|+++.. +.+.++.+..+.|.|+||+++|++..+-++|++
T Consensus 702 Al~Kl~l~tAE~AFVrc~dY~Gik~v-------krl~~i~s------~~~q~aei~~~~g~feeaek~yld~drrDLAie 768 (1189)
T KOG2041|consen 702 ALFKLALDTAEHAFVRCGDYAGIKLV-------KRLRTIHS------KEQQRAEISAFYGEFEEAEKLYLDADRRDLAIE 768 (1189)
T ss_pred HHHHHhhhhHhhhhhhhccccchhHH-------HHhhhhhh------HHHHhHhHhhhhcchhHhhhhhhccchhhhhHH
Confidence 99999999999999999999999887 55555533 334456788899999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHcCCCC
Q 000936 763 TASVHGLQDVAERLAAELGDNV 784 (1219)
Q Consensus 763 la~~~g~~~~a~~l~~~~~~~~ 784 (1219)
|+++.|+|....+|....+.+.
T Consensus 769 lr~klgDwfrV~qL~r~g~~d~ 790 (1189)
T KOG2041|consen 769 LRKKLGDWFRVYQLIRNGGSDD 790 (1189)
T ss_pred HHHhhhhHHHHHHHHHccCCCc
Confidence 9999999999999999866544
No 49
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.5e-31 Score=283.01 Aligned_cols=285 Identities=23% Similarity=0.436 Sum_probs=240.5
Q ss_pred cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 000936 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (1219)
Q Consensus 50 h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~ 129 (1219)
-..+|..+.|.|+|+.|++|+..|.+.+|+..+...-..+..|...|+++.|++++.+++||+.+|.|++|+..- +.+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhH
Confidence 456799999999999999999999999999754433344578999999999999999999999999999999653 3445
Q ss_pred EEecC-CCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeE
Q 000936 130 VLTGH-NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (1219)
Q Consensus 130 ~~~~h-~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 208 (1219)
.+..| ...|.+++|+|+...++++|.||+|+|||....+... ++.+|.-.|.
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~---------------------------vL~GHgwdVk 226 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER---------------------------VLRGHGWDVK 226 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh---------------------------eeccCCCCcc
Confidence 55544 4899999999999999999999999999987755432 5689999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEec
Q 000936 209 WAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR 288 (1219)
Q Consensus 209 ~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~ 288 (1219)
++.|||...++++|+.|..|++||.+++.+ +.++.+|.+.|..+.|+|++++|+++|.|..++++|+++.+.+++++.
T Consensus 227 svdWHP~kgLiasgskDnlVKlWDprSg~c--l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~ 304 (464)
T KOG0284|consen 227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSC--LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG 304 (464)
T ss_pred eeccCCccceeEEccCCceeEeecCCCcch--hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc
Confidence 999999999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEeCC-CCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCC
Q 000936 289 EHDRFWILASHPE-MNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQS 367 (1219)
Q Consensus 289 ~~~~i~~l~~sp~-~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 367 (1219)
|...+++++|+|- ..++++|. .|+.|..|.+...+.+... ..+| ...
T Consensus 305 Hkkdv~~~~WhP~~~~lftsgg--------------------------~Dgsvvh~~v~~~~p~~~i---~~AH---d~~ 352 (464)
T KOG0284|consen 305 HKKDVTSLTWHPLNESLFTSGG--------------------------SDGSVVHWVVGLEEPLGEI---PPAH---DGE 352 (464)
T ss_pred chhhheeeccccccccceeecc--------------------------CCCceEEEeccccccccCC---Cccc---ccc
Confidence 9999999999994 45666665 3556666666643332221 1233 459
Q ss_pred CeEEEEccCCCEEEEEEeCCCCEEEEEEecC
Q 000936 368 PRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1219)
Q Consensus 368 i~~l~~spdg~~llv~~~~~dg~i~l~~~~~ 398 (1219)
|.+++|+|=|. ++++++.|.++++|.-..
T Consensus 353 iwsl~~hPlGh--il~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 353 IWSLAYHPLGH--ILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eeeeeccccce--eEeecCCCcceeeeccCC
Confidence 99999999998 445577889999998654
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=2.1e-29 Score=257.45 Aligned_cols=285 Identities=26% Similarity=0.440 Sum_probs=238.4
Q ss_pred EEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc-CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000936 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY-KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122 (1219)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~-~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~ 122 (1219)
+..+.+|++.|..+.|+|+|.+|+|||.|..|.+|++ ...+-...+++|++.|..+.|.+|++.+++++.|.+|+.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 3455799999999999999999999999999999995 445566788999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEecCC-CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEe
Q 000936 123 QSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1219)
Q Consensus 123 ~s~~~i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1219)
++|++++.+++|...|.++.-+.-| .++.+++.||++++||+++...... .
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t----------------------------~ 171 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT----------------------------F 171 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc----------------------------c
Confidence 9999999999999999998855444 4777899999999999987543321 1
Q ss_pred ecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-
Q 000936 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR- 280 (1219)
Q Consensus 202 ~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~- 280 (1219)
.....++++.|..++..+.+|+-|+.|++||++.... ...+.||..+|+.+..+|+|.++.+.+.|.++++||++..
T Consensus 172 ~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 172 ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG--LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA 249 (338)
T ss_pred ccceeEEEEEecccccceeeccccCceeeeccccCcc--eEEeecccCceeeEEeccCCCccccccccceEEEEEecccC
Confidence 2345688999999999999999999999999998887 8899999999999999999999999999999999998753
Q ss_pred ---eeEEEEecCCC----CEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceee
Q 000936 281 ---TGVQTFRREHD----RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (1219)
Q Consensus 281 ---~~~~~~~~~~~----~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~ 353 (1219)
.++..+.++.. .....+|+|++..+.+|+ .|+.+++||......+.
T Consensus 250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags--------------------------~dr~vyvwd~~~r~~ly- 302 (338)
T KOG0265|consen 250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS--------------------------ADRFVYVWDTTSRRILY- 302 (338)
T ss_pred CCCceEEEeecchhhhhhhcceeeccCCCCcccccc--------------------------ccceEEEeecccccEEE-
Confidence 34666665543 345678999999998888 47788899987754422
Q ss_pred EeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEE
Q 000936 354 IPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYEL 393 (1219)
Q Consensus 354 ~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l 393 (1219)
.+ +|| ++.|.++.|+|....++.++. |.++.+
T Consensus 303 -kl--pGh---~gsvn~~~Fhp~e~iils~~s--dk~i~l 334 (338)
T KOG0265|consen 303 -KL--PGH---YGSVNEVDFHPTEPIILSCSS--DKTIYL 334 (338)
T ss_pred -Ec--CCc---ceeEEEeeecCCCcEEEEecc--CceeEe
Confidence 22 344 559999999999997665544 556654
No 51
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1.2e-28 Score=281.95 Aligned_cols=430 Identities=13% Similarity=0.227 Sum_probs=334.8
Q ss_pred CcceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCC-EEEEEECCCeEEEEE
Q 000936 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWN 79 (1219)
Q Consensus 1 ml~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd 79 (1219)
++.+|+++.++|+++.=+|--..+|+|..+|+|.|++++.++.+.+|+...++|++++|..||+ .+++|+..|.+.+||
T Consensus 194 ~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wD 273 (910)
T KOG1539|consen 194 VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWD 273 (910)
T ss_pred EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEE
Confidence 4778999999999999999999999999999999999999999999975569999999999987 667777889999999
Q ss_pred cCCCeEEEEEc-cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC----eEEEEEecCCCCeEEEEEe-cCCCEEEEE
Q 000936 80 YKMHRCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR----TCISVLTGHNHYVMCASFH-PKEDLVVSA 153 (1219)
Q Consensus 80 ~~~~~~~~~l~-~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~----~~i~~~~~h~~~V~~l~~s-p~~~~l~s~ 153 (1219)
++..+.+..+. .|.+.|....|.|..+.+++++.|..+++|=.+++ +.++.-.||..+..|+.|. .+|..+.++
T Consensus 274 Le~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa 353 (910)
T KOG1539|consen 274 LEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSA 353 (910)
T ss_pred cCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEec
Confidence 99888877665 89899999999999999999999999999855543 3456667999999999998 678899999
Q ss_pred ECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCC-----CCEEEEEeCCCeE
Q 000936 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-----LPLIVSGADDRQV 228 (1219)
Q Consensus 154 s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~-----g~~l~sg~~dg~I 228 (1219)
+.|++++.+++........... ... ..............-...+|..+++... .+.+++.-.+...
T Consensus 354 ~~Drt~r~fs~~~e~~~~~l~~--~~~-------~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~ 424 (910)
T KOG1539|consen 354 KQDRTLRSFSVISESQSQELGQ--LHN-------KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSA 424 (910)
T ss_pred ccCcchhhhhhhHHHHhHhhcc--ccc-------ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceE
Confidence 9999999998765332211100 000 0000000000011122345555555442 2456666678889
Q ss_pred EEEECCCCCeeeE----EeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEE---ecCCCCEEEEEEeCC
Q 000936 229 KLWRMNETKAWEV----DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF---RREHDRFWILASHPE 301 (1219)
Q Consensus 229 ~iwd~~~~~~~~~----~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~---~~~~~~i~~l~~sp~ 301 (1219)
+.|+++....-.. ..+......+++++.++-|++.+.|+..|+|-+|++++|-....| ..|...|+.++...-
T Consensus 425 ~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~ 504 (910)
T KOG1539|consen 425 YTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT 504 (910)
T ss_pred EEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC
Confidence 9999987653111 112224478999999999999999999999999999999988888 478889999999988
Q ss_pred CCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEE
Q 000936 302 MNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVL 381 (1219)
Q Consensus 302 ~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ll 381 (1219)
++.+++++. +|.+.+||+.+........+ ++ .+..+.++.....++
T Consensus 505 n~~~vsa~~--------------------------~Gilkfw~f~~k~l~~~l~l---~~-----~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 505 NRLLVSAGA--------------------------DGILKFWDFKKKVLKKSLRL---GS-----SITGIVYHRVSDLLA 550 (910)
T ss_pred CceEEEccC--------------------------cceEEEEecCCcceeeeecc---CC-----Ccceeeeeehhhhhh
Confidence 888887764 66778899887654332222 22 777888887766555
Q ss_pred EEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC-CceeEeeeCCcceEEEEE
Q 000936 382 ICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPIAADAIFY 460 (1219)
Q Consensus 382 v~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~i~~~~~v~~l~~ 460 (1219)
+.. ++-.|.+++.... .+...+.+|.+.+++++||||||++++++.|++|++||+. +..+-.+..+.++..+.|
T Consensus 551 ~~~--ddf~I~vvD~~t~---kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~ 625 (910)
T KOG1539|consen 551 IAL--DDFSIRVVDVVTR---KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSF 625 (910)
T ss_pred hhc--CceeEEEEEchhh---hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEE
Confidence 443 4678999997753 3334688999999999999999999999999999999999 778888888889999999
Q ss_pred eCCCcEEEEe--C-CeEEEEE
Q 000936 461 AGTGNLLCRA--E-DRVVIFD 478 (1219)
Q Consensus 461 s~dg~~L~s~--d-~~I~l~d 478 (1219)
||+|.+|++. | ..|++|.
T Consensus 626 SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 626 SPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCCCCEEEEEEecCceEEEEE
Confidence 9999999985 4 6788885
No 52
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=6.6e-28 Score=261.10 Aligned_cols=468 Identities=18% Similarity=0.256 Sum_probs=311.2
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCC--------eEEEEECCCCeEEEEecccCCCEEEEEEec--CCCEEEEE--E
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSG--------VIQLWDYRMGTLIDRFDEHDGPVRGVHFHK--SQPLFVSG--G 70 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg--------~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp--~~~~Lasg--s 70 (1219)
+.+.||+..|.|++.|||.-.+++|-..| .+++||..+-+.+..+...+..|.|++||+ .|.+++.- +
T Consensus 98 r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s 177 (626)
T KOG2106|consen 98 RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDS 177 (626)
T ss_pred ccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCC
Confidence 35679999999999999998888875444 599999888888888877788899999998 34455554 4
Q ss_pred CCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE---Eec-CCCCeEEEEEecC
Q 000936 71 DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV---LTG-HNHYVMCASFHPK 146 (1219)
Q Consensus 71 ~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~---~~~-h~~~V~~l~~sp~ 146 (1219)
.+..+.|||+..+......+.....|....|+|..+-++.....+.+.+|++..+..... +.. ....|.|++|.++
T Consensus 178 ~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en 257 (626)
T KOG2106|consen 178 NPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN 257 (626)
T ss_pred CccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCC
Confidence 567899999998887777777778899999999988777667789999999998866543 332 2367999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCC
Q 000936 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR 226 (1219)
Q Consensus 147 ~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg 226 (1219)
|+ +++|..+|.|.+|+..+.+.. +... .|+++|.+++.-.+|. |++|+.|+
T Consensus 258 gd-viTgDS~G~i~Iw~~~~~~~~--------------------------k~~~-aH~ggv~~L~~lr~Gt-llSGgKDR 308 (626)
T KOG2106|consen 258 GD-VITGDSGGNILIWSKGTNRIS--------------------------KQVH-AHDGGVFSLCMLRDGT-LLSGGKDR 308 (626)
T ss_pred CC-EEeecCCceEEEEeCCCceEE--------------------------eEee-ecCCceEEEEEecCcc-EeecCccc
Confidence 86 789999999999998764432 2233 8999999999999986 55599999
Q ss_pred eEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEE
Q 000936 227 QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLA 306 (1219)
Q Consensus 227 ~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la 306 (1219)
.|..||-+-.+. .-..+....++|..++=...+ |+.|+..+.|..=.+.++..+ ....|.+..|.++.+|+.+.++
T Consensus 309 ki~~Wd~~y~k~-r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~ 384 (626)
T KOG2106|consen 309 KIILWDDNYRKL-RETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLL 384 (626)
T ss_pred eEEecccccccc-ccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhhee
Confidence 999999332221 122223333444433322111 444444444433333333322 2223444455555555443333
Q ss_pred -EEeCCCeeEEEecCCcc-------------eEEecCCEEEEE-eCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEE
Q 000936 307 -AGHDSGMIVFKLERERP-------------AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTL 371 (1219)
Q Consensus 307 -~g~d~gi~v~~l~~~~~-------------~~s~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 371 (1219)
+|.+..+.+|+ ..++ .|.+.| .++++ ..|...+.|.++... .+++... . +++.+
T Consensus 385 T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l---v~~~~d~--~---~ls~v 453 (626)
T KOG2106|consen 385 TCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDL---VTIHTDN--E---QLSVV 453 (626)
T ss_pred eccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccccee---EEEEecC--C---ceEEE
Confidence 23333444444 1111 122223 33333 566667778777443 3333332 2 89999
Q ss_pred EEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCCc----eeE
Q 000936 372 SYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE----VVK 447 (1219)
Q Consensus 372 ~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~----~~~ 447 (1219)
.|+|+|.++++.+. |+.|.||.++........ ....+...|+.+.||+|++|+.+.+.|-.|..|.-... ..+
T Consensus 454 ~ysp~G~~lAvgs~--d~~iyiy~Vs~~g~~y~r-~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~k 530 (626)
T KOG2106|consen 454 RYSPDGAFLAVGSH--DNHIYIYRVSANGRKYSR-VGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVK 530 (626)
T ss_pred EEcCCCCEEEEecC--CCeEEEEEECCCCcEEEE-eeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceec
Confidence 99999998877554 789999999876432221 11222368999999999999999999999999943211 111
Q ss_pred eee---------------CCc-ceEEEEEeCCCcEEEEeC--CeEEEEEcCCCeEEEE---Eec--CCeeEEEEcCCCCE
Q 000936 448 KSI---------------LPI-AADAIFYAGTGNLLCRAE--DRVVIFDLQQRLVLGD---LQT--PFVKYVVWSNDMES 504 (1219)
Q Consensus 448 ~i~---------------~~~-~v~~l~~s~dg~~L~s~d--~~I~l~dl~~~~~l~~---~~~--~~v~~v~ws~dg~~ 504 (1219)
.++ .+. .|..++-|...++++++| |+|++|...--+.-+. +.+ +.++.|+|..+.++
T Consensus 531 DvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~ 610 (626)
T KOG2106|consen 531 DVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSH 610 (626)
T ss_pred ceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCce
Confidence 111 011 455566677778888874 8999998654443332 222 67999999987777
Q ss_pred EEEEeCCe-EEEEe
Q 000936 505 VALLSKHA-IIIAS 517 (1219)
Q Consensus 505 la~~s~~~-i~i~~ 517 (1219)
+.+..++. ++.|.
T Consensus 611 li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 611 LISTGKDTSIMQWR 624 (626)
T ss_pred EEecCCCceEEEEE
Confidence 66655544 55554
No 53
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.4e-31 Score=268.04 Aligned_cols=279 Identities=25% Similarity=0.386 Sum_probs=244.9
Q ss_pred ccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe--------cccCCCEEEEEEecCCCEEEEEECCCeEEEE
Q 000936 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF--------DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (1219)
Q Consensus 7 ~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l--------~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vW 78 (1219)
|..+.+-|..|||||++|++|+.||-|-|||+.+|+..+.+ --++.+|.|++||.|...+++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 34567899999999999999999999999999999766543 3588999999999999999999999999999
Q ss_pred EcCCCeEEEEEc-cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCC
Q 000936 79 NYKMHRCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (1219)
Q Consensus 79 d~~~~~~~~~l~-~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg 157 (1219)
.+.+|.|++.+. .|+..|+|+.||.|+..+++++.|.++++.-+.+|+++..+++|++.|+.+.|.++|+.+++++.||
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 999999999996 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCC
Q 000936 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNET 236 (1219)
Q Consensus 158 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sg~~dg~I~iwd~~~~ 236 (1219)
+|++|+..+.+.... +...+.+.+|+++..-|.. ..++++...++|.+.++...
T Consensus 371 tvkvW~~KtteC~~T-------------------------fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ 425 (508)
T KOG0275|consen 371 TVKVWHGKTTECLST-------------------------FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ 425 (508)
T ss_pred cEEEecCcchhhhhh-------------------------ccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce
Confidence 999999988655432 1223456778888877754 57888999999999998765
Q ss_pred CeeeEEeecC---CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCe
Q 000936 237 KAWEVDTLRG---HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGM 313 (1219)
Q Consensus 237 ~~~~~~~~~~---h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi 313 (1219)
- +.++.. ..+...+.+.+|.|.++.+.++|+.++.|...+|+...++..|...+..++-+|..+++|+-+.+|+
T Consensus 426 v---VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgl 502 (508)
T KOG0275|consen 426 V---VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGL 502 (508)
T ss_pred E---EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccch
Confidence 4 444432 3455677789999999999999999999999999999999999999999999999999998776553
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.2e-28 Score=312.25 Aligned_cols=277 Identities=16% Similarity=0.284 Sum_probs=233.2
Q ss_pred ecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCC----e----EEEEecccCCCEEEEEEec-CCCEEEEEECCCeE
Q 000936 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG----T----LIDRFDEHDGPVRGVHFHK-SQPLFVSGGDDYKI 75 (1219)
Q Consensus 5 l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g----~----~i~~l~~h~~~V~~l~fsp-~~~~Lasgs~Dg~I 75 (1219)
+.+|.+.|.+++|+|++++||+|+.||.|+||+..+. . ....+ .+...|.+++|+| ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 12233 3456899999987 47899999999999
Q ss_pred EEEEcCCCeEEEEEccCCCCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEe-cCCCEEEEE
Q 000936 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHH-EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFH-PKEDLVVSA 153 (1219)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~I~~l~fs~-d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~s-p~~~~l~s~ 153 (1219)
++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||+|++||+.++.++..+..+ ..|.++.|+ +++.++++|
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 9999999999999999999999999997 7789999999999999999999998888755 679999995 468999999
Q ss_pred ECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000936 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 233 (1219)
Q Consensus 154 s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~ 233 (1219)
+.||.|++||++..+. ....+.+|...|.++.|. ++..+++++.|+.|++||+
T Consensus 637 s~dg~I~iwD~~~~~~--------------------------~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 637 SADHKVYYYDLRNPKL--------------------------PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred eCCCeEEEEECCCCCc--------------------------cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence 9999999999976432 122456899999999997 6789999999999999999
Q ss_pred CCCC----eeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEe-------------cCCCCEEEE
Q 000936 234 NETK----AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR-------------REHDRFWIL 296 (1219)
Q Consensus 234 ~~~~----~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~-------------~~~~~i~~l 296 (1219)
.... ...+..+.+|...+.++.|+|++.+|++|+.|+.|++|+.....++..+. .+...|.++
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v 769 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSV 769 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEE
Confidence 7431 12367889999999999999999999999999999999987665443322 233458999
Q ss_pred EEeCCCCEEEEEeC
Q 000936 297 ASHPEMNLLAAGHD 310 (1219)
Q Consensus 297 ~~sp~~~~la~g~d 310 (1219)
+|+|++..+++|+.
T Consensus 770 ~ws~~~~~lva~~~ 783 (793)
T PLN00181 770 CWRGQSSTLVAANS 783 (793)
T ss_pred EEcCCCCeEEEecC
Confidence 99999999888874
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=5.2e-31 Score=272.27 Aligned_cols=272 Identities=27% Similarity=0.532 Sum_probs=231.0
Q ss_pred cCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE
Q 000936 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF 87 (1219)
Q Consensus 8 h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~ 87 (1219)
.+..|.|+.+. ...+++|..|++|.|||..+..+...+.+|++.|.|+.|. .+.+++|+.|.+|+|||+++|+++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 35689999986 4468999999999999999999999999999999999984 5599999999999999999999999
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeE---EEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEEC
Q 000936 88 TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC---ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (1219)
Q Consensus 88 ~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~---i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~ 164 (1219)
++-+|...|..+.|+. .+++++|.|.+|.+||+.+... ...+.||...|..+.|+ .++++++|.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 9999999999999985 4899999999999999987643 34567999999999997 469999999999999999
Q ss_pred CCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEee
Q 000936 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL 244 (1219)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 244 (1219)
.+.+. ..++.+|..+|.|+.+. ++++++|+.|.+|++||+..+.+ +..+
T Consensus 348 st~ef---------------------------vRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~c--LRvL 396 (499)
T KOG0281|consen 348 STCEF---------------------------VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC--LRVL 396 (499)
T ss_pred cceee---------------------------ehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHH--HHHH
Confidence 88553 44788999999998874 68999999999999999999998 8889
Q ss_pred cCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee---------EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeE
Q 000936 245 RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG---------VQTFRREHDRFWILASHPEMNLLAAGHDSGMIV 315 (1219)
Q Consensus 245 ~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~---------~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v 315 (1219)
.||..-|.++.|. .+.|++|+.||+|++||+..+.. +.+...|.+++..+.|.. -+++++.+++.+.+
T Consensus 397 eGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~-fqIvsssHddtILi 473 (499)
T KOG0281|consen 397 EGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE-FQIISSSHDDTILI 473 (499)
T ss_pred hchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc-eEEEeccCCCeEEE
Confidence 9999999999994 67899999999999999986542 334456777888887753 34555556666555
Q ss_pred EEecCC
Q 000936 316 FKLERE 321 (1219)
Q Consensus 316 ~~l~~~ 321 (1219)
|++...
T Consensus 474 WdFl~~ 479 (499)
T KOG0281|consen 474 WDFLNG 479 (499)
T ss_pred EEcCCC
Confidence 555443
No 56
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=3.8e-27 Score=264.73 Aligned_cols=448 Identities=19% Similarity=0.301 Sum_probs=319.4
Q ss_pred cceecccCCCEEEEEEeCCCC---EEEEEECCCeEEEEECCCC--eEEEEecccCCCEEEEEEecCCCEEEEEECCCeEE
Q 000936 2 LTKFETKSNRVKGLSFHSKRP---WILASLHSGVIQLWDYRMG--TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIK 76 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspdg~---~Lasg~~dg~I~iWd~~~g--~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~ 76 (1219)
++.+.||..+|+|+.|-|+.+ ++++|+.||.|.+|.++.. ..+.++++|...+.|+ +...........|+.+.
T Consensus 47 ~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~~v~ 124 (764)
T KOG1063|consen 47 VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV--VARSSVMTCKAADGTVS 124 (764)
T ss_pred EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE--EeeeeEEEeeccCceEE
Confidence 567899999999999999887 8999999999999999844 3445666666555444 33322222235677777
Q ss_pred EEEcCCCe--------------------------------------------------EEEEEccCCCCEEEEEEcCCCC
Q 000936 77 VWNYKMHR--------------------------------------------------CLFTLLGHLDYIRTVQFHHEYP 106 (1219)
Q Consensus 77 vWd~~~~~--------------------------------------------------~~~~l~~h~~~I~~l~fs~d~~ 106 (1219)
+||.+..+ .+..+.||.+.|++++|...+.
T Consensus 125 vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~ 204 (764)
T KOG1063|consen 125 VWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG 204 (764)
T ss_pred EeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence 77763222 2335679999999999987654
Q ss_pred ---EEEEEECCCeEEEEECCCCe---------------------EEE----------EEecCCCCeEEEEEecCCCEEEE
Q 000936 107 ---WIVSASDDQTIRIWNWQSRT---------------------CIS----------VLTGHNHYVMCASFHPKEDLVVS 152 (1219)
Q Consensus 107 ---~l~s~s~Dg~I~iwd~~s~~---------------------~i~----------~~~~h~~~V~~l~~sp~~~~l~s 152 (1219)
+|+|+|.|..||||.+.-+. ... .+.||.+.|+++.|+|.+..|++
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 89999999999999764211 111 12489999999999999999999
Q ss_pred EECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000936 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1219)
Q Consensus 153 ~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd 232 (1219)
+|.|.++.+|......-.-. +....-...+...+.....|+|+++.+++-+..|..++|.
T Consensus 285 ASaDksmiiW~pd~~tGiWv--------------------~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk 344 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWV--------------------DVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK 344 (764)
T ss_pred cccCcceEEEecCCccceEE--------------------EEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence 99999999998765211100 0000111224556788999999999999999999999999
Q ss_pred CCCCCee-eEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----eeEEEEecCCCCEEEEEEeCCCCEEEE
Q 000936 233 MNETKAW-EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR----TGVQTFRREHDRFWILASHPEMNLLAA 307 (1219)
Q Consensus 233 ~~~~~~~-~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~----~~~~~~~~~~~~i~~l~~sp~~~~la~ 307 (1219)
..+...| ....+.||...|+.+.|+|.|.+|++.|.|.+-|+|---.. ..+..-+.|.-.++++++-+....+++
T Consensus 345 t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVS 424 (764)
T KOG1063|consen 345 TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVS 424 (764)
T ss_pred ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeee
Confidence 5544443 24556799999999999999999999999999999864411 122223446667888888885555666
Q ss_pred EeCCCe-eEEEecCC---------------------------------------------------------------cc
Q 000936 308 GHDSGM-IVFKLERE---------------------------------------------------------------RP 323 (1219)
Q Consensus 308 g~d~gi-~v~~l~~~---------------------------------------------------------------~~ 323 (1219)
|.+..+ .+|+.+.. .|
T Consensus 425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP 504 (764)
T KOG1063|consen 425 GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP 504 (764)
T ss_pred cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence 655543 45533210 00
Q ss_pred ---------------------------eEEecCCEEEEE------eCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeE
Q 000936 324 ---------------------------AFAVSGDSLFYA------KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRT 370 (1219)
Q Consensus 324 ---------------------------~~s~~~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~ 370 (1219)
+.+++++.++++ ....|++|+..+-.... .+..+. ..|+.
T Consensus 505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~--~L~~Hs-----LTVT~ 577 (764)
T KOG1063|consen 505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ--ELEGHS-----LTVTR 577 (764)
T ss_pred hHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh--eecccc-----eEEEE
Confidence 344457777776 34568899988755433 333322 38999
Q ss_pred EEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCc-cccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCCc---ee
Q 000936 371 LSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGD-SVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE---VV 446 (1219)
Q Consensus 371 l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~-~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~---~~ 446 (1219)
++|||||++++.++. |.++.+|........... .....|..-|.++.|+|+++++++++.|++|++|..... .+
T Consensus 578 l~FSpdg~~LLsvsR--DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i 655 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSR--DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYI 655 (764)
T ss_pred EEECCCCcEEEEeec--CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhh
Confidence 999999999988776 789999998665443322 135678888999999999999999999999999998843 22
Q ss_pred Ee---eeCCcceEEEEEeCC-----CcEEEEe--CCeEEEEEcC
Q 000936 447 KK---SILPIAADAIFYAGT-----GNLLCRA--EDRVVIFDLQ 480 (1219)
Q Consensus 447 ~~---i~~~~~v~~l~~s~d-----g~~L~s~--d~~I~l~dl~ 480 (1219)
.. ++....|+.+++.|- +.+++.+ .|.|.+|...
T Consensus 656 ~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 656 SRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 22 233338888888774 2244554 7999999865
No 57
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=267.60 Aligned_cols=277 Identities=16% Similarity=0.266 Sum_probs=237.3
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCC---eEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g---~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd 79 (1219)
+.|+.|++.|.-+.||++|++||+++.|.+..+|++... ++.+++.+|..+|.-+.||||.++|++|+.|..+++||
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 457889999999999999999999999999999997654 45788899999999999999999999999999999999
Q ss_pred cCCCeEEEEEc-cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC-CCCeEEEEEecCCCEEEEEECCC
Q 000936 80 YKMHRCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH-NHYVMCASFHPKEDLVVSASLDQ 157 (1219)
Q Consensus 80 ~~~~~~~~~l~-~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h-~~~V~~l~~sp~~~~l~s~s~dg 157 (1219)
+.+|.+...+. +|...+.+++|.|||..+++|+.|+++..||.. |+......+- ...|.+++.++||+++++.+.|.
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDK 376 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEeccc
Confidence 99999887774 356789999999999999999999999999976 4444555443 35699999999999999999999
Q ss_pred eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 000936 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (1219)
Q Consensus 158 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~ 237 (1219)
.|++++..+.... .+.....+|++.+.+.+++++++.-.+..+++||+...+
T Consensus 377 ~i~l~~~e~~~dr----------------------------~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 377 KIRLYNREARVDR----------------------------GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK 428 (519)
T ss_pred ceeeechhhhhhh----------------------------ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh
Confidence 9999998763322 123356789999999999999999999999999999777
Q ss_pred eeeEEeecCCCCC--eEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCC-CEEEEEeC
Q 000936 238 AWEVDTLRGHMNN--VSCVMFHA-KQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEM-NLLAAGHD 310 (1219)
Q Consensus 238 ~~~~~~~~~h~~~--I~~l~~sp-~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~-~~la~g~d 310 (1219)
. +..+.||... +-.-+|.- +..++++||+|+.|+||+..+++++..+.+|...+.+++|+|.. .++|+++|
T Consensus 429 l--v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD 503 (519)
T KOG0293|consen 429 L--VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD 503 (519)
T ss_pred H--HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC
Confidence 6 7778888654 33445543 55899999999999999999999999999999999999999954 56777775
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=4.2e-28 Score=272.36 Aligned_cols=287 Identities=31% Similarity=0.542 Sum_probs=247.8
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 000936 45 DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124 (1219)
Q Consensus 45 ~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s 124 (1219)
.++.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|+++++++++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45678999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecC
Q 000936 125 RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD 204 (1219)
Q Consensus 125 ~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1219)
++.+..+..|...+.++.|+|+++++++++.+|.|++||+.+.+. ...+..|.
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------------~~~~~~~~ 135 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC---------------------------LTTLRGHT 135 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE---------------------------EEEeccCC
Confidence 888888999999999999999988888888899999999975332 23455788
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 000936 205 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ 284 (1219)
Q Consensus 205 ~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~ 284 (1219)
..+.++.|+|++.++++++.+|.|++||+.+.+. +..+..|...+.++.|+|+++.+++++.+|.|++||+.+++.+.
T Consensus 136 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 213 (289)
T cd00200 136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213 (289)
T ss_pred CcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec
Confidence 8999999999998888888899999999987776 66777888899999999999999999999999999999988888
Q ss_pred EEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCC
Q 000936 285 TFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSL 364 (1219)
Q Consensus 285 ~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 364 (1219)
.+..+...+.++.++|++.+++++.. ++.+++|++.+++....+ .. +
T Consensus 214 ~~~~~~~~i~~~~~~~~~~~~~~~~~--------------------------~~~i~i~~~~~~~~~~~~--~~--~--- 260 (289)
T cd00200 214 TLRGHENGVNSVAFSPDGYLLASGSE--------------------------DGTIRVWDLRTGECVQTL--SG--H--- 260 (289)
T ss_pred chhhcCCceEEEEEcCCCcEEEEEcC--------------------------CCcEEEEEcCCceeEEEc--cc--c---
Confidence 88788889999999999888887762 566778887765543332 22 2
Q ss_pred CCCCeEEEEccCCCEEEEEEeCCCCEEEEEE
Q 000936 365 NQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1219)
Q Consensus 365 ~~~i~~l~~spdg~~llv~~~~~dg~i~l~~ 395 (1219)
...+.+++|+|+++.+++++ .++.+.+|+
T Consensus 261 ~~~i~~~~~~~~~~~l~~~~--~d~~i~iw~ 289 (289)
T cd00200 261 TNSVTSLAWSPDGKRLASGS--ADGTIRIWD 289 (289)
T ss_pred CCcEEEEEECCCCCEEEEec--CCCeEEecC
Confidence 22899999999988765543 578999984
No 59
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.6e-27 Score=264.80 Aligned_cols=476 Identities=16% Similarity=0.212 Sum_probs=340.5
Q ss_pred CCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEE--CCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCC
Q 000936 29 HSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGG--DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP 106 (1219)
Q Consensus 29 ~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs--~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~ 106 (1219)
...+|.+||.+..+.-+.+..|..++++++||++|+++++|- ....++||++.....+..+..|...|+|++|+|.++
T Consensus 56 AGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~k 135 (1080)
T KOG1408|consen 56 AGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNK 135 (1080)
T ss_pred cCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCc
Confidence 345789999998888888888999999999999999999984 678899999999889999999999999999999999
Q ss_pred EEEEEEC--CCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccc-cCCcc-ceeec
Q 000936 107 WIVSASD--DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTV-SPADD-ILRLS 182 (1219)
Q Consensus 107 ~l~s~s~--Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~~~~-~~~~~ 182 (1219)
++++.+. |-.|.+|||+.......-+ -...|..++|+.+|.++++.+ ...|++|.+...++-.. .|... ...+.
T Consensus 136 yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg 213 (1080)
T KOG1408|consen 136 YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLG 213 (1080)
T ss_pred EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhcc
Confidence 9998775 5678899997543332222 346789999999999999987 68999999987663221 11100 00000
Q ss_pred ccccccc-----cc---ccceEEEEEeec-----------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 000936 183 QMNTDLF-----GG---VDAVVKYVLEGH-----------------DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (1219)
Q Consensus 183 ~~~~~~~-----~~---~~~~~~~~~~~~-----------------~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~ 237 (1219)
......| +. .+.....+..|| ....+|++.+ .++|++|+.+|.|++|+..+-.
T Consensus 214 ~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~ 291 (1080)
T KOG1408|consen 214 NLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLD 291 (1080)
T ss_pred ccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhh
Confidence 0000000 00 001111111121 2334555555 4689999999999999876543
Q ss_pred eeeEEeec------------------------CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee---EEEEecCC
Q 000936 238 AWEVDTLR------------------------GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG---VQTFRREH 290 (1219)
Q Consensus 238 ~~~~~~~~------------------------~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~---~~~~~~~~ 290 (1219)
. +.++. +..-....+.|+|....|.+.-.|..++|||++.-.. ...+-.|.
T Consensus 292 y--~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS 369 (1080)
T KOG1408|consen 292 Y--AGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHS 369 (1080)
T ss_pred h--ccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeecc
Confidence 2 11111 0111234678999999999999999999999987544 33455677
Q ss_pred CCEEEEEEeC------------CCCEEEEEeCCCeeEEEecCCcc-----------------------------------
Q 000936 291 DRFWILASHP------------EMNLLAAGHDSGMIVFKLERERP----------------------------------- 323 (1219)
Q Consensus 291 ~~i~~l~~sp------------~~~~la~g~d~gi~v~~l~~~~~----------------------------------- 323 (1219)
..||.+..-| .+.++.+.+|+.+.+|++.....
T Consensus 370 ~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fd 449 (1080)
T KOG1408|consen 370 ACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFD 449 (1080)
T ss_pred ceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCccc
Confidence 7888776444 45567777899999998876211
Q ss_pred ----------------eEEecCCEEEEE-eCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEcc-CCCEEEEEEe
Q 000936 324 ----------------AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSP-TENAVLICSD 385 (1219)
Q Consensus 324 ----------------~~s~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~llv~~~ 385 (1219)
++++++++|+.+ ..|.+++|++.+-+....+.. | ...|.++.||. +-..-+++++
T Consensus 450 ka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA----H---esEilcLeyS~p~~~~kLLASa 522 (1080)
T KOG1408|consen 450 KALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA----H---ESEILCLEYSFPVLTNKLLASA 522 (1080)
T ss_pred ccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheec----c---cceeEEEeecCchhhhHhhhhc
Confidence 667888999999 899999999998655333322 2 34999999983 2222244556
Q ss_pred CCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCC--eEEEEEcCCCEEEEEecC-CceeEeee-C-----CcceE
Q 000936 386 VDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARN--RFAVLDKSSNQVLVKNLK-NEVVKKSI-L-----PIAAD 456 (1219)
Q Consensus 386 ~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~--~~l~~~~~dg~I~Iwdl~-~~~~~~i~-~-----~~~v~ 456 (1219)
+.|..|.+|++..+- .+...+.+|...|+++.|...| +..++++.|..|.+...+ ......+. + +..+.
T Consensus 523 srdRlIHV~Dv~rny--~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNY--DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred cCCceEEEEeccccc--chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEE
Confidence 678899999987652 3344789999999999999887 778888878888776555 11111121 1 12789
Q ss_pred EEEEeCCCcEEEEe--CCeEEEEEcCCCeEEEEEec-----CCeeEEEEcCCCCEEEEEeC-CeEEEEecC
Q 000936 457 AIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT-----PFVKYVVWSNDMESVALLSK-HAIIIASKK 519 (1219)
Q Consensus 457 ~l~~s~dg~~L~s~--d~~I~l~dl~~~~~l~~~~~-----~~v~~v~ws~dg~~la~~s~-~~i~i~~~~ 519 (1219)
+|...|+.+++++. |..|+|||+++|+....+++ +....|...|.|.|||+... .++.++|+-
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~ 671 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV 671 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEec
Confidence 99999998888664 99999999999999999988 45677889999999987655 446677743
No 60
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.7e-28 Score=290.70 Aligned_cols=294 Identities=26% Similarity=0.426 Sum_probs=251.8
Q ss_pred EEecc-cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe--EEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 000936 45 DRFDE-HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR--CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1219)
Q Consensus 45 ~~l~~-h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~--~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd 121 (1219)
..+.. |...|+++.|+++|+.+++++.|+.+++|+..+.+ ....+.+|...|..++|+|++.++++++.|++|+|||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 34434 47889999999999999999999999999997777 7778889999999999999999999999999999999
Q ss_pred C-CCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEE
Q 000936 122 W-QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1219)
Q Consensus 122 ~-~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1219)
+ ..+.++.++.+|...|++++|+|+++++++|+.|++|++||+++++ +...+
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~---------------------------~~~~l 284 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE---------------------------CVRKL 284 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe---------------------------EEEee
Confidence 9 5668999999999999999999999999999999999999998743 45588
Q ss_pred eecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCC--eEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000936 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNN--VSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1219)
Q Consensus 201 ~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~--I~~l~~sp~g~~L~s~s~dg~I~iwdl~ 278 (1219)
.+|..+|++++|++++++|++++.|+.|++||+.++....+..+.++... ++++.|+|++.++++++.|+.+++||+.
T Consensus 285 ~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 285 KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 99999999999999999999999999999999999883214556666555 9999999999999999999999999999
Q ss_pred CCeeEEEEecCCCC---EEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEe
Q 000936 279 KRTGVQTFRREHDR---FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (1219)
Q Consensus 279 ~~~~~~~~~~~~~~---i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~ 355 (1219)
++.....+..+... +.+...++.+.++.+|. .|+.|.+|+..++..+....
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~--------------------------~d~~v~~~~~~s~~~~~~l~ 418 (456)
T KOG0266|consen 365 SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS--------------------------EDGSVYVWDSSSGGILQRLE 418 (456)
T ss_pred CCcceeeecccCCcceeEecccccCCCCeEEEEe--------------------------CCceEEEEeCCccchhhhhc
Confidence 99999998888764 33444566777777777 57889999999866644433
Q ss_pred ecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEec
Q 000936 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1219)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~ 397 (1219)
... .. .+..+.++|....++..+...|+.+++|..+
T Consensus 419 ~h~---~~---~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 419 GHS---KA---AVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCC---CC---ceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 221 13 7888999999998877776578899999764
No 61
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.5e-28 Score=258.46 Aligned_cols=279 Identities=25% Similarity=0.447 Sum_probs=236.2
Q ss_pred ccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCC---EEEEEECCCeEEEEEcCCC
Q 000936 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP---LFVSGGDDYKIKVWNYKMH 83 (1219)
Q Consensus 7 ~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~---~Lasgs~Dg~I~vWd~~~~ 83 (1219)
.|.+.|.++... ++++++|+.||.+++|| ..|+.+..+.+|.++|.+++|..... .|++++.|.++++|-++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 478888888877 78999999999999999 68999999999999999999965444 5999999999999998766
Q ss_pred eEE----EEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC-------------------------CeEEEEEecC
Q 000936 84 RCL----FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-------------------------RTCISVLTGH 134 (1219)
Q Consensus 84 ~~~----~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s-------------------------~~~i~~~~~h 134 (1219)
... ..-.||...|.++...++|..+++||.|.+|.||+..+ +.++..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 432 23359999999999999999999999999999999321 2456778899
Q ss_pred CCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcC
Q 000936 135 NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP 214 (1219)
Q Consensus 135 ~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp 214 (1219)
..+|.++.|++ ...+.+++.|.+|++||+.++..... ......++++.++|
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~----------------------------~~~~ksl~~i~~~~ 310 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKST----------------------------LTTNKSLNCISYSP 310 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceee----------------------------eecCcceeEeeccc
Confidence 99999999997 67899999999999999988665431 12356789999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCe-eeEEeecCCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCe-eEEEEecCCC
Q 000936 215 TLPLIVSGADDRQVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKRT-GVQTFRREHD 291 (1219)
Q Consensus 215 ~g~~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~h~~~I~~l~~sp~g-~~L~s~s~dg~I~iwdl~~~~-~~~~~~~~~~ 291 (1219)
..++|++|+.|..+++||.+++.. ....++.+|.+.|.++.|+|.. .+|++++.|+++++||+++.+ ++..+.+|.+
T Consensus 311 ~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D 390 (423)
T KOG0313|consen 311 LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND 390 (423)
T ss_pred ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc
Confidence 999999999999999999987643 3467889999999999999954 578899999999999999887 8999999999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeeEEE
Q 000936 292 RFWILASHPEMNLLAAGHDSGMIVFK 317 (1219)
Q Consensus 292 ~i~~l~~sp~~~~la~g~d~gi~v~~ 317 (1219)
.+.++.|...+.++..|.|+.+.+++
T Consensus 391 Kvl~vdW~~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 391 KVLSVDWNEGGLIVSGGADNKLRIFK 416 (423)
T ss_pred eEEEEeccCCceEEeccCcceEEEec
Confidence 99999998765555555566655554
No 62
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.97 E-value=6.2e-27 Score=259.63 Aligned_cols=422 Identities=13% Similarity=0.182 Sum_probs=298.8
Q ss_pred CcceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 000936 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 1 ml~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1219)
++++|+||.+.|.|++|+.||+.+|+|+.|..|.+|+..-.. +-.+ .|.+.|.|+.|+|-...|+|++-+ ..-+|+.
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~ 121 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSP 121 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHHhhhcchh-hccccCh
Confidence 468899999999999999999999999999999999954222 2222 699999999999999999999864 5778987
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEecCC-----CEEEE
Q 000936 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL---TGHNHYVMCASFHPKE-----DLVVS 152 (1219)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~---~~h~~~V~~l~~sp~~-----~~l~s 152 (1219)
....... . .....|.+.+|..||++++.|-.+|+|.+-+- +++....+ .+.+++|.+++|+|.. +.+++
T Consensus 122 ~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 122 EQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred hhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence 6543222 1 13457889999999999999999999999874 44443333 3578899999999964 57888
Q ss_pred EECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000936 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1219)
Q Consensus 153 ~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd 232 (1219)
....+++.++.+.+..... -..-.-...|+.+.++|.+++.|+.|+.+++|.
T Consensus 199 ~DW~qTLSFy~LsG~~Igk----------------------------~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLSGKQIGK----------------------------DRALNFDPCCISYFTNGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred EeccceeEEEEecceeecc----------------------------cccCCCCchhheeccCCcEEEEccCCCceEEEe
Confidence 8899999999887622110 111223456899999999999999999999997
Q ss_pred CCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEe-------------------cCCCCE
Q 000936 233 MNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR-------------------REHDRF 293 (1219)
Q Consensus 233 ~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~-------------------~~~~~i 293 (1219)
...-. +.++......|+.++.+|+++.++.|..||+|..|++...+....++ +...+|
T Consensus 251 R~Gvr---LGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrI 327 (1081)
T KOG1538|consen 251 RDGVR---LGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRI 327 (1081)
T ss_pred ecCeE---EeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeee
Confidence 55433 67777788899999999999999999999999999876433211111 111111
Q ss_pred EEEE----EeCCCCEEEEEeCCCeeEEEecCCcc------------------eEEecCCEEEEEeCCeEEEEEecCCcce
Q 000936 294 WILA----SHPEMNLLAAGHDSGMIVFKLERERP------------------AFAVSGDSLFYAKDRFLRYYEFSTQKDT 351 (1219)
Q Consensus 294 ~~l~----~sp~~~~la~g~d~gi~v~~l~~~~~------------------~~s~~~~~l~~~~d~~i~v~d~~~~~~~ 351 (1219)
.+-. .+--.+.+|+.-.+.+.+|++..++. .....+++++.+.+..+..+|+..-+..
T Consensus 328 kC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~R 407 (1081)
T KOG1538|consen 328 KCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKER 407 (1081)
T ss_pred eHHHHHHHHHhhhhhheecccceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhh
Confidence 1100 01123457777788888998877653 4456788899999999999999873321
Q ss_pred eeEeecCCCCCCCCCCCeEE--EEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEE
Q 000936 352 QVIPIRRPGSTSLNQSPRTL--SYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVL 429 (1219)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~l--~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~ 429 (1219)
... .. +-|+-+ .=.|-|+--++.+-.+++.++||--+.-+. .+......|.++..+...+.+++
T Consensus 408 eW~-M~--------S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~Pi-----Ll~~~~tAvrClDINA~R~kLAv 473 (1081)
T KOG1538|consen 408 EWQ-ME--------SLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPI-----LLLKQATAVRCLDINASRKKLAV 473 (1081)
T ss_pred hhh-HH--------HHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchh-----heecccceeEEeeccCCcceEEE
Confidence 110 00 011111 113556555566665777888876443221 24455667899999988888888
Q ss_pred EcCCCEEEEEecCCceeEeeeCCcceEEEEEeCC-CcEEEE-eCCeEE
Q 000936 430 DKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGT-GNLLCR-AEDRVV 475 (1219)
Q Consensus 430 ~~~dg~I~Iwdl~~~~~~~i~~~~~v~~l~~s~d-g~~L~s-~d~~I~ 475 (1219)
..+.++..++|+.++.+- + ....+.++.|+.. ..+++. +.|.+.
T Consensus 474 VDD~~~c~v~DI~t~elL-~-QEpg~nSV~wNT~~E~MlcfT~~g~L~ 519 (1081)
T KOG1538|consen 474 VDDNDTCLVYDIDTKELL-F-QEPGANSVAWNTQCEDMLCFTGGGYLN 519 (1081)
T ss_pred EccCCeEEEEEccCCceE-e-ecCCCceEEeeccccceEEEecCCceE
Confidence 888899999999955432 1 2237888888876 445543 345543
No 63
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=2.5e-26 Score=248.94 Aligned_cols=428 Identities=15% Similarity=0.217 Sum_probs=314.4
Q ss_pred ccCCCEEEEEEeC--CCCEEEEE--ECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 000936 7 TKSNRVKGLSFHS--KRPWILAS--LHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1219)
Q Consensus 7 ~h~~~V~~i~fsp--dg~~Lasg--~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1219)
.-...|+|++||+ .|.+|+.. +.+..+.|||+..+......+..+..|....|+|.++-++.....+.+.+|+.+.
T Consensus 152 ~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~ 231 (626)
T KOG2106|consen 152 FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG 231 (626)
T ss_pred cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC
Confidence 4567899999998 35555554 3346789999999888888877888899999999887666666668999999988
Q ss_pred CeEEEE---EccC-CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCe
Q 000936 83 HRCLFT---LLGH-LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQT 158 (1219)
Q Consensus 83 ~~~~~~---l~~h-~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~ 158 (1219)
+....+ +..+ ...|.|++|.+++. +++|..+|.|.||+..+.+..+....|++.|.+++...+|. |++|+.|+.
T Consensus 232 ~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRk 309 (626)
T KOG2106|consen 232 GSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRK 309 (626)
T ss_pred CceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccce
Confidence 755443 3332 36899999999986 88999999999999988887777779999999999998886 555999999
Q ss_pred EEEEECCCCcccccc--C------------CccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeC
Q 000936 159 VRVWDIGALRKKTVS--P------------ADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (1219)
Q Consensus 159 I~vwd~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~ 224 (1219)
|..||- ..++.... | ...++.-...+..+.|...........+|......++.+|+.+.+++++.
T Consensus 310 i~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gq 388 (626)
T KOG2106|consen 310 IILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQ 388 (626)
T ss_pred EEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccC
Confidence 999993 22221111 1 11122223344556666666677788899999999999999999999999
Q ss_pred CCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCE
Q 000936 225 DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNL 304 (1219)
Q Consensus 225 dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~ 304 (1219)
|+.+++|+ ..+. .--+....+..|+.|+|.| .++.|+..|...+.|..+...+.... .+.++.++.++|+|.+
T Consensus 389 dk~v~lW~--~~k~---~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~ 461 (626)
T KOG2106|consen 389 DKHVRLWN--DHKL---EWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAF 461 (626)
T ss_pred cceEEEcc--CCce---eEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCE
Confidence 99999999 3332 1122234788999999999 99999999999999999865555444 4889999999999999
Q ss_pred EEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEE
Q 000936 305 LAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICS 384 (1219)
Q Consensus 305 la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~ 384 (1219)
+|.|+. |+.|++|.+..+.......-+..+ . +|+.+.||+|++++...+
T Consensus 462 lAvgs~--------------------------d~~iyiy~Vs~~g~~y~r~~k~~g--s---~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 462 LAVGSH--------------------------DNHIYIYRVSANGRKYSRVGKCSG--S---PITHLDWSSDSQFLVSNS 510 (626)
T ss_pred EEEecC--------------------------CCeEEEEEECCCCcEEEEeeeecC--c---eeEEeeecCCCceEEecc
Confidence 999983 566667766654332222222222 2 999999999999876554
Q ss_pred eCCCCEEEEEEecCCCCCCCcc-----------------ccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC-C---
Q 000936 385 DVDGGSYELYVIPKDSIGRGDS-----------------VQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-N--- 443 (1219)
Q Consensus 385 ~~~dg~i~l~~~~~~~~~~~~~-----------------~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~--- 443 (1219)
+ |-.+-.| .+... .+... ....+...+..++-+...++++++.+.|+|++|... .
T Consensus 511 ~--d~eiLyW-~~~~~-~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r 586 (626)
T KOG2106|consen 511 G--DYEILYW-KPSEC-KQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR 586 (626)
T ss_pred C--ceEEEEE-ccccC-cccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc
Confidence 4 5567778 33221 11100 001122223334444556889999999999999987 2
Q ss_pred ceeEeeeCCc-ceEEEEEeCCCcEEEEe--CCeEEEEEc
Q 000936 444 EVVKKSILPI-AADAIFYAGTGNLLCRA--EDRVVIFDL 479 (1219)
Q Consensus 444 ~~~~~i~~~~-~v~~l~~s~dg~~L~s~--d~~I~l~dl 479 (1219)
.....+.+|+ -|.+++|......++++ |..|..|++
T Consensus 587 A~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 587 APSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 2344555666 89999999998888775 788999986
No 64
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.2e-25 Score=248.59 Aligned_cols=484 Identities=16% Similarity=0.203 Sum_probs=350.4
Q ss_pred eeccc-CCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 000936 4 KFETK-SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1219)
Q Consensus 4 ~l~~h-~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1219)
.+.|+ ...|-+++|++ +..|.+.+.+|+|.-||+.+++....++...++|.+++.+|.+..++.|++||.+...+...
T Consensus 63 vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p 141 (691)
T KOG2048|consen 63 VIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP 141 (691)
T ss_pred EEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCC
Confidence 34554 45799999995 55677888999999999999999999999999999999999999999999999888888887
Q ss_pred CeEEEE--EccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--------cCCCCeEEEEEecCCCEEEE
Q 000936 83 HRCLFT--LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT--------GHNHYVMCASFHPKEDLVVS 152 (1219)
Q Consensus 83 ~~~~~~--l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~--------~h~~~V~~l~~sp~~~~l~s 152 (1219)
++..+. +...++.|.++.|+|++..+++|+.||.|++||..++..+...+ +..--|+++.|..+ ..|++
T Consensus 142 ~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~s 220 (691)
T KOG2048|consen 142 DKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIAS 220 (691)
T ss_pred ceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEE
Confidence 766543 44567899999999999999999999999999999988776321 12334778888744 57999
Q ss_pred EECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000936 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1219)
Q Consensus 153 ~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd 232 (1219)
|...|+|.+||...+... .....|...|.+++..+++.++++++.|+.|..|.
T Consensus 221 gDS~G~V~FWd~~~gTLi---------------------------qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 221 GDSAGTVTFWDSIFGTLI---------------------------QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred ecCCceEEEEcccCcchh---------------------------hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence 999999999998765433 35667999999999999999999999999999998
Q ss_pred CCCCCe-ee-EEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEe-cCCCCEEEEEEeCCCCEEEEEe
Q 000936 233 MNETKA-WE-VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR-REHDRFWILASHPEMNLLAAGH 309 (1219)
Q Consensus 233 ~~~~~~-~~-~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~-~~~~~i~~l~~sp~~~~la~g~ 309 (1219)
..+.+. |. ......|...|.+++..++ .+++|+.|.++.+-............ .....-..+...|..+++..-.
T Consensus 274 ~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~ 351 (691)
T KOG2048|consen 274 LTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWK 351 (691)
T ss_pred ecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEec
Confidence 877654 32 2334578889999999876 79999999988876554311100000 0000001233444444555544
Q ss_pred CCCeeEEEecCC-----------------c------ceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCC
Q 000936 310 DSGMIVFKLERE-----------------R------PAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQ 366 (1219)
Q Consensus 310 d~gi~v~~l~~~-----------------~------~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 366 (1219)
..++.+|.+... . .+++++|+.++++.-..+++|.++....+.......... . ..
T Consensus 352 ~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~-~-~~ 429 (691)
T KOG2048|consen 352 AHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPL-A-LL 429 (691)
T ss_pred cccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchh-h-hc
Confidence 555555555443 1 167889999999988888888887744333333332221 1 22
Q ss_pred CCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCcccc-ccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCCce
Q 000936 367 SPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQ-DAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEV 445 (1219)
Q Consensus 367 ~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~-~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~ 445 (1219)
....+.|+-|++.+++++- +...+.++++......++.... ......|..++.+++|.+++..+..|.|.+|++++..
T Consensus 430 ~a~~i~ftid~~k~~~~s~-~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 430 DASAISFTIDKNKLFLVSK-NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLE 508 (691)
T ss_pred cceeeEEEecCceEEEEec-ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccce
Confidence 6778899999998888873 5567888887766544443222 2355678899999999999999999999999999776
Q ss_pred eEeee--CCcceEEEEEeCC--CcEE-EEeCCeEEEEEcCCCeEEE-------EEec------CCeeEEEEcCCC-CEEE
Q 000936 446 VKKSI--LPIAADAIFYAGT--GNLL-CRAEDRVVIFDLQQRLVLG-------DLQT------PFVKYVVWSNDM-ESVA 506 (1219)
Q Consensus 446 ~~~i~--~~~~v~~l~~s~d--g~~L-~s~d~~I~l~dl~~~~~l~-------~~~~------~~v~~v~ws~dg-~~la 506 (1219)
.+.+. .+..++.+.++|. ++++ ++++++++-||++..+.-+ .++. ..+..+.+++.+ ..+.
T Consensus 509 ~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~ 588 (691)
T KOG2048|consen 509 SHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFI 588 (691)
T ss_pred eecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEE
Confidence 66554 2348999999965 4444 4469999999995544211 1111 556777777644 4556
Q ss_pred EEeCCeEEEEecCcc
Q 000936 507 LLSKHAIIIASKKLV 521 (1219)
Q Consensus 507 ~~s~~~i~i~~~~l~ 521 (1219)
+-+.+-+++.+.+..
T Consensus 589 ~~~a~w~~~id~~~~ 603 (691)
T KOG2048|consen 589 VYDAHWSCLIDFSLP 603 (691)
T ss_pred EEcCcEEEEEecCCC
Confidence 666666777765543
No 65
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=235.51 Aligned_cols=287 Identities=17% Similarity=0.292 Sum_probs=242.6
Q ss_pred EEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000936 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122 (1219)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~ 122 (1219)
....++.|.++|+.+.|+-+|++.++++.|.+|++||...+.+++++.+|...|..++.+.|+..+++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEee
Q 000936 123 QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1219)
Q Consensus 123 ~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1219)
.+|+.++.+.+|...|+.++|+.+...+++|+.|.++++||.++.... +.+++..
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e-------------------------PiQilde 143 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE-------------------------PIQILDE 143 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC-------------------------ccchhhh
Confidence 999999999999999999999999999999999999999999875443 2335556
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 000936 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG 282 (1219)
Q Consensus 203 ~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~ 282 (1219)
...+|.++..+. ..|++|+.||+++.||++.+.. ... -...+|++++|+++++..++++-|+++++.|-.+|+.
T Consensus 144 a~D~V~Si~v~~--heIvaGS~DGtvRtydiR~G~l--~sD--y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 144 AKDGVSSIDVAE--HEIVAGSVDGTVRTYDIRKGTL--SSD--YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred hcCceeEEEecc--cEEEeeccCCcEEEEEeeccee--ehh--hcCCcceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 677788887754 5799999999999999998875 222 3446899999999999999999999999999999999
Q ss_pred EEEEecCCCCEEEE--EEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCC
Q 000936 283 VQTFRREHDRFWIL--ASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360 (1219)
Q Consensus 283 ~~~~~~~~~~i~~l--~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 360 (1219)
++.+++|.+.-+.+ +++.....+++|+ .||.+.+||+..+..+..++.. +
T Consensus 218 L~sYkGhkn~eykldc~l~qsdthV~sgS--------------------------EDG~Vy~wdLvd~~~~sk~~~~--~ 269 (307)
T KOG0316|consen 218 LKSYKGHKNMEYKLDCCLNQSDTHVFSGS--------------------------EDGKVYFWDLVDETQISKLSVV--S 269 (307)
T ss_pred HHHhcccccceeeeeeeecccceeEEecc--------------------------CCceEEEEEeccceeeeeeccC--C
Confidence 99999988765443 4455555666666 4778899999987764443332 2
Q ss_pred CCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEE
Q 000936 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1219)
Q Consensus 361 ~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~ 395 (1219)
. . .+.+++++|.-..++++.+ +....|.
T Consensus 270 ~-v---~v~dl~~hp~~~~f~~A~~---~~~~~~~ 297 (307)
T KOG0316|consen 270 T-V---IVTDLSCHPTMDDFITATG---HGDLFWY 297 (307)
T ss_pred c-e---eEEeeecccCccceeEecC---Cceecee
Confidence 1 1 4789999999888888776 5555554
No 66
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3e-27 Score=237.02 Aligned_cols=278 Identities=16% Similarity=0.274 Sum_probs=242.9
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe--cccCCCEEEEEEecCC-CEEEEEECCCeEEEEE
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF--DEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWN 79 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l--~~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd 79 (1219)
+++++|.+.|.+++|+-+|..|++|+.|+++.+|+++.++..... .+|.+.|-.++|+|.. .+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 457899999999999999999999999999999999877555443 5899999999999854 5899999999999999
Q ss_pred cCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeE
Q 000936 80 YKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTV 159 (1219)
Q Consensus 80 ~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I 159 (1219)
+.++++........+.| -+.|+|+|.+++.++.|..|.+.|.++.+...... ....+.-++|+-++++++..+..|+|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 99999999887555544 57899999999999999999999998877766554 34567788999778888877778999
Q ss_pred EEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 000936 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (1219)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~ 239 (1219)
.|......+. ...+..|.....|+.|+|+|+++++|+.|..+.+||+...-+
T Consensus 172 ~ILsypsLkp---------------------------v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC- 223 (313)
T KOG1407|consen 172 EILSYPSLKP---------------------------VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC- 223 (313)
T ss_pred EEEecccccc---------------------------ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh-
Confidence 9998876553 336788999999999999999999999999999999998777
Q ss_pred eEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCC
Q 000936 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSG 312 (1219)
Q Consensus 240 ~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~g 312 (1219)
++.+..+.-+|..++|+.+|++|+++|+|..|-|=++.+|..+..++ ..++...++|||...+||.+.++.
T Consensus 224 -~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 224 -ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred -heeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCC
Confidence 78888899999999999999999999999999999999999998887 567788999999999999776543
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.8e-26 Score=296.21 Aligned_cols=313 Identities=16% Similarity=0.305 Sum_probs=239.8
Q ss_pred CCeEEEEECCCCeEEEEe-----cccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC----e----EEEEEccCCCCE
Q 000936 30 SGVIQLWDYRMGTLIDRF-----DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH----R----CLFTLLGHLDYI 96 (1219)
Q Consensus 30 dg~I~iWd~~~g~~i~~l-----~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~----~----~~~~l~~h~~~I 96 (1219)
+|.+++|+..+......+ ..|.+.|.+++|+|++++|++|+.|+.|+||+..+. . +...+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 677889998776554443 358999999999999999999999999999997531 1 223333 34679
Q ss_pred EEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEec-CCCEEEEEECCCeEEEEECCCCccccccC
Q 000936 97 RTVQFHHE-YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSP 174 (1219)
Q Consensus 97 ~~l~fs~d-~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~I~vwd~~~~~~~~~~~ 174 (1219)
.+++|++. +.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||+++....
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~---- 611 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI---- 611 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE----
Confidence 99999874 67999999999999999999999999999999999999997 6789999999999999999764321
Q ss_pred CccceeeccccccccccccceEEEEEeecCCCeEEEEEc-CCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEE
Q 000936 175 ADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSC 253 (1219)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-p~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~ 253 (1219)
..+. +...+.++.|+ +++.++++|+.||.|++||+++.+. .+..+.+|...|++
T Consensus 612 -----------------------~~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~~~~~~~h~~~V~~ 666 (793)
T PLN00181 612 -----------------------GTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-PLCTMIGHSKTVSY 666 (793)
T ss_pred -----------------------EEEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-cceEecCCCCCEEE
Confidence 1233 33578899995 5789999999999999999987652 25677899999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCC------eeEEEEecCCCCEEEEEEeCCCCEEEEEeC-CCeeEEEecCCcceEE
Q 000936 254 VMFHAKQDIIVSNSEDKSIRVWDVTKR------TGVQTFRREHDRFWILASHPEMNLLAAGHD-SGMIVFKLERERPAFA 326 (1219)
Q Consensus 254 l~~sp~g~~L~s~s~dg~I~iwdl~~~------~~~~~~~~~~~~i~~l~~sp~~~~la~g~d-~gi~v~~l~~~~~~~s 326 (1219)
+.|. ++.+|++++.|++|++||+..+ .++..+..|...+..++++|++.++++|+. +.+.+|+.....+..
T Consensus 667 v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~- 744 (793)
T PLN00181 667 VRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVL- 744 (793)
T ss_pred EEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceE-
Confidence 9997 7889999999999999999743 567788889999999999999999999974 333445433222111
Q ss_pred ecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEe
Q 000936 327 VSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVI 396 (1219)
Q Consensus 327 ~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~ 396 (1219)
.|.+.+.....-.... .+ ...|.+++|+|++..+++++ .+|.|++|++
T Consensus 745 ---------------s~~~~~~~~~~~~~~~--~~---~~~V~~v~ws~~~~~lva~~--~dG~I~i~~~ 792 (793)
T PLN00181 745 ---------------SYKFKTIDPVSGLEVD--DA---SQFISSVCWRGQSSTLVAAN--STGNIKILEM 792 (793)
T ss_pred ---------------EEecccCCcccccccC--CC---CcEEEEEEEcCCCCeEEEec--CCCcEEEEec
Confidence 1111111111001111 11 22789999999999765543 5789999985
No 68
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=2e-28 Score=243.25 Aligned_cols=288 Identities=18% Similarity=0.322 Sum_probs=254.6
Q ss_pred eecccCCCEEEEEEeC---CCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 000936 4 KFETKSNRVKGLSFHS---KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fsp---dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1219)
...||+.+|..++||| +|-+|++++.||.=.+-+-++|..+.+|.+|.+.|.+...+.+-.+-++++.|-+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 5679999999999987 8889999999999999999999999999999999999999999889999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEecCCCCeEEEEEecCCCEEEEEECCCeE
Q 000936 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT-CISVLTGHNHYVMCASFHPKEDLVVSASLDQTV 159 (1219)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~-~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I 159 (1219)
-+|..++++. |..-|.+++|+.|.++|++|+.+..+||+|++..+ +...+.+|.+.|..+.|....+.+++++.|++|
T Consensus 89 ~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV 167 (334)
T KOG0278|consen 89 VTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTV 167 (334)
T ss_pred hhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence 9999999887 99999999999999999999999999999998654 567789999999999999999999999999999
Q ss_pred EEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 000936 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (1219)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~ 239 (1219)
|+||.+++.... . -....+|+++.++++|+++.+ ...+.|.+||..+-..
T Consensus 168 RLWD~rTgt~v~---------------------------s-L~~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~- 217 (334)
T KOG0278|consen 168 RLWDHRTGTEVQ---------------------------S-LEFNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGL- 217 (334)
T ss_pred EEEEeccCcEEE---------------------------E-EecCCCCcceeeccCCCEEEE-ecCceeEEeccccccc-
Confidence 999999876543 1 124678999999999986655 4567899999998775
Q ss_pred eEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEE-ecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEe
Q 000936 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF-RREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1219)
Q Consensus 240 ~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~-~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l 318 (1219)
+.. .....+|.+.+++|+...+++|++|..++.||..++..+..+ ++|.++|.++.|+|+|...++|+.
T Consensus 218 -lKs-~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE-------- 287 (334)
T KOG0278|consen 218 -LKS-YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSE-------- 287 (334)
T ss_pred -eee-ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCC--------
Confidence 333 334567999999999999999999999999999999999886 889999999999999999999995
Q ss_pred cCCcceEEecCCEEEEEeCCeEEEEEecCCcc
Q 000936 319 ERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD 350 (1219)
Q Consensus 319 ~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~ 350 (1219)
||+|++|....++.
T Consensus 288 ------------------DGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 288 ------------------DGTIRLWQTTPGKT 301 (334)
T ss_pred ------------------CceEEEEEecCCCc
Confidence 67788887766544
No 69
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=2.1e-28 Score=265.12 Aligned_cols=291 Identities=20% Similarity=0.365 Sum_probs=244.5
Q ss_pred eEEEEecccCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCC-CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 000936 42 TLIDRFDEHDGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYKM-HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119 (1219)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp-~~~~Lasgs~Dg~I~vWd~~~-~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~i 119 (1219)
+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++-. +++++++.+|..+|+.++|+++|..++|+|.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 56778899999999999999 899999999999999999865 8999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEecCC-CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEE
Q 000936 120 WNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1219)
Q Consensus 120 wd~~s~~~i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1219)
||.++|+++..+. ....+.|+.|+|++ +.+++|+.|+.|+.||+++++...
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq--------------------------- 336 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ--------------------------- 336 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---------------------------
Confidence 9999999999987 45678999999999 899999999999999999977543
Q ss_pred EEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000936 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1219)
Q Consensus 199 ~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~ 278 (1219)
....|-+.|..+.|-++|+.+++.++|+.++||+...+-... .....+.....++..+|++.+++.-+.|+.|.++.+.
T Consensus 337 eYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik-~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK-NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTV 415 (503)
T ss_pred HHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch-hhcchhhccCcceecCCCCCeehhhccCceEEEEecc
Confidence 345688999999999999999999999999999998776421 1222334456789999999999999999999999865
Q ss_pred CCee---EEEEecCC--CCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceee
Q 000936 279 KRTG---VQTFRREH--DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (1219)
Q Consensus 279 ~~~~---~~~~~~~~--~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~ 353 (1219)
..-. ...|.+|. +--..+.|||||.+|++|.. +|.+.+||..+.+....
T Consensus 416 ~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds--------------------------dG~v~~wdwkt~kl~~~ 469 (503)
T KOG0282|consen 416 PPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS--------------------------DGKVNFWDWKTTKLVSK 469 (503)
T ss_pred cccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC--------------------------CccEEEeechhhhhhhc
Confidence 4322 22344443 33566889999999999984 77889999998776443
Q ss_pred EeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEE
Q 000936 354 IPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1219)
Q Consensus 354 ~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~ 395 (1219)
.. .+ ...+..+.|+|.....+++++ -+|.|.+|+
T Consensus 470 lk--ah-----~~~ci~v~wHP~e~Skvat~~-w~G~Ikiwd 503 (503)
T KOG0282|consen 470 LK--AH-----DQPCIGVDWHPVEPSKVATCG-WDGLIKIWD 503 (503)
T ss_pred cc--cC-----CcceEEEEecCCCcceeEecc-cCceeEecC
Confidence 32 22 338899999999888777776 678999985
No 70
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=4.7e-29 Score=257.87 Aligned_cols=278 Identities=24% Similarity=0.456 Sum_probs=231.3
Q ss_pred cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 000936 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (1219)
Q Consensus 50 h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~ 129 (1219)
....|.|+.+ |...+++|..|.+|+|||.++..++..+.||++.|.|+.|.. +.+++||.|.+|+|||+++|+++.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence 4567999988 445799999999999999999999999999999999999864 589999999999999999999999
Q ss_pred EEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEE
Q 000936 130 VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW 209 (1219)
Q Consensus 130 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 209 (1219)
++-+|...|..+.|+ ..+++++|.|.++.|||+...... .+..++.||...|+.
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~i------------------------t~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDI------------------------TLRRVLVGHRAAVNV 325 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHH------------------------HHHHHHhhhhhheee
Confidence 999999999999998 569999999999999999774422 234467899999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC
Q 000936 210 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE 289 (1219)
Q Consensus 210 l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~ 289 (1219)
+.|+. +++++++.|++|++|++.+... +.++.+|...|.|+.+ .|+++++||+|.+|++||+..|.++..+.+|
T Consensus 326 Vdfd~--kyIVsASgDRTikvW~~st~ef--vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGH 399 (499)
T KOG0281|consen 326 VDFDD--KYIVSASGDRTIKVWSTSTCEF--VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH 399 (499)
T ss_pred ecccc--ceEEEecCCceEEEEeccceee--ehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhch
Confidence 99976 4999999999999999999998 9999999999999887 5899999999999999999999999999999
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCccee-------eEeecCCCCC
Q 000936 290 HDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQ-------VIPIRRPGST 362 (1219)
Q Consensus 290 ~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~-------~~~~~~~~~~ 362 (1219)
.+-|.++.|. .+.+++|. .||+|++||+..+.... +..+.. +
T Consensus 400 EeLvRciRFd--~krIVSGa--------------------------YDGkikvWdl~aaldpra~~~~~Cl~~lv~--h- 448 (499)
T KOG0281|consen 400 EELVRCIRFD--NKRIVSGA--------------------------YDGKIKVWDLQAALDPRAPASTLCLRTLVE--H- 448 (499)
T ss_pred HHhhhheeec--Cceeeecc--------------------------ccceEEEEecccccCCcccccchHHHhhhh--c-
Confidence 9999999885 34566665 58889999998865431 111111 1
Q ss_pred CCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCC
Q 000936 363 SLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDS 400 (1219)
Q Consensus 363 ~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~ 400 (1219)
.+.|..+.|.. ..+ +++. -+.+|-+|++....
T Consensus 449 --sgRVFrLQFD~--fqI-vsss-HddtILiWdFl~~~ 480 (499)
T KOG0281|consen 449 --SGRVFRLQFDE--FQI-ISSS-HDDTILIWDFLNGP 480 (499)
T ss_pred --cceeEEEeecc--eEE-Eecc-CCCeEEEEEcCCCC
Confidence 23667777753 233 3333 34589999987654
No 71
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.9e-27 Score=239.07 Aligned_cols=279 Identities=14% Similarity=0.256 Sum_probs=240.3
Q ss_pred eecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 000936 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~ 83 (1219)
.|+||..+++.|.|+.+|.+|.+++.|.+..||-..+|+.+.++.+|.+.|.|++.+.+.+.+++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCCEEEEEEcCCCCEEEEEECC-----CeEEEEECC-------CCeEEEEEecCCCCeEEEEEecCCCEEE
Q 000936 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-----QTIRIWNWQ-------SRTCISVLTGHNHYVMCASFHPKEDLVV 151 (1219)
Q Consensus 84 ~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~D-----g~I~iwd~~-------s~~~i~~~~~h~~~V~~l~~sp~~~~l~ 151 (1219)
+++.++. -..+|+.+.|++++++++.++++ +.|.++|++ +.++...+..+.+.++.+-|.|-++.|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9999987 56789999999999988877654 679999987 4566788888889999999999999999
Q ss_pred EEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 000936 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (1219)
Q Consensus 152 s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iw 231 (1219)
+|..||.|..||+++++.. ......|...|+.+.++++..++++++.|.+-++|
T Consensus 164 ~Ghe~G~is~~da~~g~~~--------------------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKEL--------------------------VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLV 217 (327)
T ss_pred EecCCCcEEEEEcccCcee--------------------------eechhhhccccccccccCCcceEEecccCccceee
Confidence 9999999999999986542 22445688999999999999999999999999999
Q ss_pred ECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcE--------------EEEeCCCCeeEEEEecCCCCEEEEE
Q 000936 232 RMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSI--------------RVWDVTKRTGVQTFRREHDRFWILA 297 (1219)
Q Consensus 232 d~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I--------------~iwdl~~~~~~~~~~~~~~~i~~l~ 297 (1219)
|+.+-.. +.++. ...+|++.+++|....++.|+..... ++|++-..+.+..+++|-++|.+++
T Consensus 218 D~~tl~v--~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvA 294 (327)
T KOG0643|consen 218 DVRTLEV--LKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVA 294 (327)
T ss_pred eccceee--EEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeE
Confidence 9998875 44443 45789999999988777776543222 2233222334566778999999999
Q ss_pred EeCCCCEEEEEeCCC
Q 000936 298 SHPEMNLLAAGHDSG 312 (1219)
Q Consensus 298 ~sp~~~~la~g~d~g 312 (1219)
+||+|+..++|..+|
T Consensus 295 fhPdGksYsSGGEDG 309 (327)
T KOG0643|consen 295 FHPDGKSYSSGGEDG 309 (327)
T ss_pred ECCCCcccccCCCCc
Confidence 999999999998644
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=6.2e-27 Score=235.36 Aligned_cols=307 Identities=16% Similarity=0.258 Sum_probs=248.2
Q ss_pred ecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 000936 47 FDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126 (1219)
Q Consensus 47 l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~ 126 (1219)
+++|+.|++.+.++.+|.+|.+++.|.+..||-..+|+.+.++.||.+.|+|+....+.+.+++|+.|.++++||+.+|+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 56899999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEecCCCEEEEEECC-----CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEe
Q 000936 127 CISVLTGHNHYVMCASFHPKEDLVVSASLD-----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1219)
Q Consensus 127 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d-----g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1219)
++..++ ...+|..+.|+++|++++.++.+ +.|.++|++....... ...+...+.
T Consensus 86 ~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~--------------------s~ep~~kI~ 144 (327)
T KOG0643|consen 86 QLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID--------------------SEEPYLKIP 144 (327)
T ss_pred EEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc--------------------ccCceEEec
Confidence 999998 46789999999999988877643 5799999986432111 112344566
Q ss_pred ecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000936 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1219)
Q Consensus 202 ~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~ 281 (1219)
.+...++.+-|.|-++.|++|.+||.|.+||.+++... +..-+.|...|+.++++|+..++++++.|.+-++||+.+.+
T Consensus 145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~-v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL-VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred CCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee-eechhhhccccccccccCCcceEEecccCccceeeecccee
Confidence 77899999999999999999999999999999998652 66668899999999999999999999999999999999999
Q ss_pred eEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCC--eEEEEEecCCcceeeEeecCC
Q 000936 282 GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDR--FLRYYEFSTQKDTQVIPIRRP 359 (1219)
Q Consensus 282 ~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~--~i~v~d~~~~~~~~~~~~~~~ 359 (1219)
.+.++. ...++.+.+++|....++.|.....+-...... ..+ .-++|++...+.+ -.+ .
T Consensus 224 v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~--------------r~GKFEArFyh~i~eEEi--grv--k 284 (327)
T KOG0643|consen 224 VLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTST--------------RAGKFEARFYHLIFEEEI--GRV--K 284 (327)
T ss_pred eEEEee-ecccccceecccccceEEecCCceeeeeeeecc--------------cccchhhhHHHHHHHHHh--ccc--c
Confidence 999887 456899999999888888776432211000000 111 1223333322221 112 2
Q ss_pred CCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCC
Q 000936 360 GSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (1219)
Q Consensus 360 ~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~ 399 (1219)
+| .++|.+++|+|+|+ ..+++.+||.+++..+..+
T Consensus 285 GH---FGPINsvAfhPdGk--sYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 285 GH---FGPINSVAFHPDGK--SYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cc---ccCcceeEECCCCc--ccccCCCCceEEEEEeccc
Confidence 33 66999999999999 4577889999999887643
No 73
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4e-24 Score=248.21 Aligned_cols=278 Identities=17% Similarity=0.180 Sum_probs=226.2
Q ss_pred cccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCC-eEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe
Q 000936 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (1219)
Q Consensus 6 ~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g-~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~ 84 (1219)
.+|...-+.|+|.|+|.+|.+++.||.|++|+.... +...++.-|...|.+++- ++.+|++|+.+++|.+|.+.++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 479999999999999999999999999999997665 444555447778887776 45589999999999999998877
Q ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEEC
Q 000936 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (1219)
Q Consensus 85 ~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~ 164 (1219)
.-..+..-.-++++++|+.+|++++.||+|-.|++-+.........+.+|..+|.++.|+|++++|++.+.||.|++||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 65555556778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEee
Q 000936 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL 244 (1219)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 244 (1219)
.++......+.- .+..-......+..++|+|+|..++..+.|+.|++|+..+.........
T Consensus 168 ~~~~~~~tl~~v-------------------~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 168 QDGILSKTLTGV-------------------DKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred ccchhhhhcccC-------------------CccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence 986654432210 0000001145677899999988899999999999999988776222222
Q ss_pred cCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEE
Q 000936 245 RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308 (1219)
Q Consensus 245 ~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g 308 (1219)
..+...++.++|+|+|+|||+++.||.|.|||..+-.. ......|.+++|.|+.+.+..-
T Consensus 229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~ 288 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLI 288 (933)
T ss_pred cccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEE
Confidence 33555599999999999999999999999999987221 3344678999999988766543
No 74
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.8e-25 Score=251.31 Aligned_cols=467 Identities=16% Similarity=0.218 Sum_probs=305.5
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCC---EEEEEECCCeEEEEEcCC--CeEEEEE
Q 000936 15 LSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP---LFVSGGDDYKIKVWNYKM--HRCLFTL 89 (1219)
Q Consensus 15 i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~---~Lasgs~Dg~I~vWd~~~--~~~~~~l 89 (1219)
.+|.|.+ .++.| ....|.+||..+...+..+.+|..+|+|+.|-|+.. ++++|+.|+.|++|.++. -.++.++
T Consensus 20 ~sw~~~~-~vafG-a~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~ 97 (764)
T KOG1063|consen 20 SSWGPGG-LVAFG-AGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTI 97 (764)
T ss_pred ccccccc-eEEec-CCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEee
Confidence 3454443 44444 578899999888778889999999999999999877 899999999999999873 3566677
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC--------------------------------------------
Q 000936 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-------------------------------------------- 125 (1219)
Q Consensus 90 ~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~-------------------------------------------- 125 (1219)
.+|...+.|+ +.......+.+.|+++.+||.+..
T Consensus 98 ~g~~~~~~cv--~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s 175 (764)
T KOG1063|consen 98 QGHCKECVCV--VARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYS 175 (764)
T ss_pred cCcceeEEEE--EeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEec
Confidence 7766555444 333323333367788888876322
Q ss_pred ------eEEEEEecCCCCeEEEEEecCCC---EEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceE
Q 000936 126 ------TCISVLTGHNHYVMCASFHPKED---LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (1219)
Q Consensus 126 ------~~i~~~~~h~~~V~~l~~sp~~~---~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1219)
+.+..+.||.+.|.+++|...+. +++++|.|..||+|.+.-..............................
T Consensus 176 ~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~ 255 (764)
T KOG1063|consen 176 SSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQY 255 (764)
T ss_pred cCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEE
Confidence 23455678999999999987554 889999999999998754331110000000000000000000000011
Q ss_pred ----EEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-ee----EEeecCCCCCeEEEEEccCCCEEEEEe
Q 000936 197 ----KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-WE----VDTLRGHMNNVSCVMFHAKQDIIVSNS 267 (1219)
Q Consensus 197 ----~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~-~~----~~~~~~h~~~I~~l~~sp~g~~L~s~s 267 (1219)
...+.||+..|.++.|+|.+..|++++.|.++.+|...+... |. +....+......+..|+|+++.+++-+
T Consensus 256 ~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g 335 (764)
T KOG1063|consen 256 RISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG 335 (764)
T ss_pred EEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEec
Confidence 123559999999999999999999999999999999876632 21 233334455688999999999999999
Q ss_pred CCCcEEEEeCCCC---eeEEEEecCCCCEEEEEEeCCCCEEEE-EeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEE
Q 000936 268 EDKSIRVWDVTKR---TGVQTFRREHDRFWILASHPEMNLLAA-GHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYY 343 (1219)
Q Consensus 268 ~dg~I~iwdl~~~---~~~~~~~~~~~~i~~l~~sp~~~~la~-g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~ 343 (1219)
..|..++|..... .....+.+|-+.|..++|+|.|.++.+ |.|....+|........ |
T Consensus 336 ~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~------------------w 397 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE------------------W 397 (764)
T ss_pred ccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc------------------e
Confidence 9999999983322 233346678899999999999998665 55666666654311110 1
Q ss_pred EecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCC------------------------
Q 000936 344 EFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD------------------------ 399 (1219)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~------------------------ 399 (1219)
.- +...+.+|+ ..++++|-+. +..++ ++.+...+++|+.+..
T Consensus 398 HE-------iaRPQiHGy-----Dl~c~~~vn~-~~~FV-SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~ 463 (764)
T KOG1063|consen 398 HE-------IARPQIHGY-----DLTCLSFVNE-DLQFV-SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGAN 463 (764)
T ss_pred ee-------ecccccccc-----cceeeehccC-Cceee-ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccc
Confidence 00 001111111 3333333331 11111 1112223333332100
Q ss_pred ----------------------------------------CC---------CCCccccccccCceeEEEEEeCCeEEEEE
Q 000936 400 ----------------------------------------SI---------GRGDSVQDAKKGLGGSAIFIARNRFAVLD 430 (1219)
Q Consensus 400 ----------------------------------------~~---------~~~~~~~~~~~~~i~~~~fs~d~~~l~~~ 430 (1219)
++ ......+-+|...|.+++.+|++++++++
T Consensus 464 VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASa 543 (764)
T KOG1063|consen 464 VPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASA 543 (764)
T ss_pred cccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeeh
Confidence 00 00002345888899999999999999998
Q ss_pred cC-----CCEEEEEecCC-ceeEeeeCCc-ceEEEEEeCCCcEEEE--eCCeEEEEEcCCCeEEE-E---Eec--CCeeE
Q 000936 431 KS-----SNQVLVKNLKN-EVVKKSILPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLG-D---LQT--PFVKY 495 (1219)
Q Consensus 431 ~~-----dg~I~Iwdl~~-~~~~~i~~~~-~v~~l~~s~dg~~L~s--~d~~I~l~dl~~~~~l~-~---~~~--~~v~~ 495 (1219)
.. ...|++|+..+ ...+.+..|+ .|+.|.|||||++|++ .|.++.+|..+...... . .+. .-|..
T Consensus 544 CKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWd 623 (764)
T KOG1063|consen 544 CKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWD 623 (764)
T ss_pred hhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEE
Confidence 74 34699999994 4556788888 9999999999999955 59999999875432211 1 111 34778
Q ss_pred EEEcCCCCEEEEEeCCeE-EEEe
Q 000936 496 VVWSNDMESVALLSKHAI-IIAS 517 (1219)
Q Consensus 496 v~ws~dg~~la~~s~~~i-~i~~ 517 (1219)
..|+||+.++|+++.|+. .+|.
T Consensus 624 csW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 624 CSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred cccCcccceeEEecCCceEEEEe
Confidence 889999999999999874 4665
No 75
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-27 Score=250.78 Aligned_cols=291 Identities=16% Similarity=0.293 Sum_probs=238.9
Q ss_pred EEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC---eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 000936 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH---RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119 (1219)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~---~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~i 119 (1219)
..+.+..|...|.-+.||++|++|||++.|.+..+|.+... +..+++.+|..+|..+.||||.+++++|+.|..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 34566789999999999999999999999999999987543 457889999999999999999999999999999999
Q ss_pred EECCCCeEEEEEe-cCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEE
Q 000936 120 WNWQSRTCISVLT-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1219)
Q Consensus 120 wd~~s~~~i~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1219)
||+.+|.+...+. +|...+.+++|.|||..+++|+.|+++..||+.+.....
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~--------------------------- 348 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN--------------------------- 348 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc---------------------------
Confidence 9999999887774 456789999999999999999999999999998744221
Q ss_pred EEee-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 000936 199 VLEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (1219)
Q Consensus 199 ~~~~-~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl 277 (1219)
.++ ....|.+++..+||+++++.+.|..|++++..+... . .+.....+|++.+.|.+++++++.-.+..+++||+
T Consensus 349 -W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d--r-~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl 424 (519)
T KOG0293|consen 349 -WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD--R-GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDL 424 (519)
T ss_pred -ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh--h-ccccccCceeEEEEcCCCcEEEEEcccCeeEEeec
Confidence 111 235689999999999999999999999999887653 2 23345578999999999999999999999999999
Q ss_pred CCCeeEEEEecCCCCEEEE--EEeC-CCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeE
Q 000936 278 TKRTGVQTFRREHDRFWIL--ASHP-EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVI 354 (1219)
Q Consensus 278 ~~~~~~~~~~~~~~~i~~l--~~sp-~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~ 354 (1219)
.....+..+.+|...-..+ +|-. +..++++|+ .|+.|++|+..+|+.+..+
T Consensus 425 ~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS--------------------------ED~kvyIWhr~sgkll~~L 478 (519)
T KOG0293|consen 425 EENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS--------------------------EDSKVYIWHRISGKLLAVL 478 (519)
T ss_pred chhhHHHHhhcccccceEEEeccCCCCcceEEecC--------------------------CCceEEEEEccCCceeEee
Confidence 9888888888776543222 2322 335666666 5889999999999885554
Q ss_pred eecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecC
Q 000936 355 PIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1219)
Q Consensus 355 ~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~ 398 (1219)
. ||.. .+.+++|+|....+++++ +|||+|+||....
T Consensus 479 --s--GHs~---~vNcVswNP~~p~m~ASa-sDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 --S--GHSK---TVNCVSWNPADPEMFASA-SDDGTIRIWGPSD 514 (519)
T ss_pred --c--CCcc---eeeEEecCCCCHHHhhcc-CCCCeEEEecCCc
Confidence 3 3323 999999999998776554 4899999998764
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8e-27 Score=253.59 Aligned_cols=277 Identities=25% Similarity=0.443 Sum_probs=240.3
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE
Q 000936 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~ 88 (1219)
.+.|++++|||..++=.+...+-.++||+..+....+++......|.+++|-.||++|+.|...|.|+|+|+++...+..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 46899999999777654445567799999988888887877888999999999999999999999999999888778888
Q ss_pred EccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCC-CEEEEEECCCeEEEEECCC
Q 000936 89 LLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGA 166 (1219)
Q Consensus 89 l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~ 166 (1219)
+.+|..+|..+.|+|.+. .+++|++|+.+++||+.+......+.+|..+|.|.+|+|.. ..++|||.||.|++||++.
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 999999999999999765 78889999999999999998877899999999999999975 5899999999999999987
Q ss_pred CccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecC
Q 000936 167 LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRG 246 (1219)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~ 246 (1219)
... ......|..+|..+.+-|.|..+++++. ..|++||+.++... +.....
T Consensus 186 ~~~---------------------------~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~ql-l~~~~~ 236 (487)
T KOG0310|consen 186 LTS---------------------------RVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQL-LTSMFN 236 (487)
T ss_pred CCc---------------------------eeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCcee-hhhhhc
Confidence 431 1234569999999999999999998875 67999999966542 444555
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeE
Q 000936 247 HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIV 315 (1219)
Q Consensus 247 h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v 315 (1219)
|...|+|+.+..++..|++++-|+.+++||+.+.+.+..+. ..++|.+++.+|+++.+++|..+|+..
T Consensus 237 H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 237 HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred ccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceee
Confidence 99999999999999999999999999999998888888776 567899999999999999998777553
No 77
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=4.7e-26 Score=228.48 Aligned_cols=287 Identities=20% Similarity=0.331 Sum_probs=241.3
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE--EccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEE
Q 000936 45 DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT--LLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWN 121 (1219)
Q Consensus 45 ~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~--l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd 121 (1219)
+.+++|..+|.+++|+-+|..|++|+.|+++.||++...+.... ..+|.+.|..++|+|..+ .+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 45568999999999999999999999999999999987755543 368999999999998765 899999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEe
Q 000936 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1219)
Q Consensus 122 ~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1219)
..+++++.......+.+ -+.|+|+|.+++.++.|..|.+.|.++.+.... .
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~----------------------------~ 144 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNE----------------------------E 144 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeeh----------------------------h
Confidence 99999999887555554 488999999999999999999999988654321 1
Q ss_pred ecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000936 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1219)
Q Consensus 202 ~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~ 281 (1219)
.....++-++|+.++.+++.....|.|.|.....-+. +.++..|..+..|+.|+|+|+++++|+.|-.+.+||+...-
T Consensus 145 ~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp--v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi 222 (313)
T KOG1407|consen 145 QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP--VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI 222 (313)
T ss_pred cccceeeeeeecCCCCEEEEecCCceEEEEecccccc--ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh
Confidence 2334567789998888888888889999999987776 99999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCC
Q 000936 282 GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGS 361 (1219)
Q Consensus 282 ~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 361 (1219)
++..+.++.-+|..++||.+|++||+++. |..|-+-+..+|..+..++.
T Consensus 223 C~R~isRldwpVRTlSFS~dg~~lASaSE--------------------------Dh~IDIA~vetGd~~~eI~~----- 271 (313)
T KOG1407|consen 223 CERCISRLDWPVRTLSFSHDGRMLASASE--------------------------DHFIDIAEVETGDRVWEIPC----- 271 (313)
T ss_pred hheeeccccCceEEEEeccCcceeeccCc--------------------------cceEEeEecccCCeEEEeec-----
Confidence 99999999999999999999999999995 55666777777776444333
Q ss_pred CCCCCCCeEEEEccCCCEEEEEEeCCC-------CEEEEEEe
Q 000936 362 TSLNQSPRTLSYSPTENAVLICSDVDG-------GSYELYVI 396 (1219)
Q Consensus 362 ~~~~~~i~~l~~spdg~~llv~~~~~d-------g~i~l~~~ 396 (1219)
.++..+++|+|....++.+++..+ |.+++|-+
T Consensus 272 ---~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 272 ---EGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred ---cCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence 227788999999888777766433 45555544
No 78
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.1e-25 Score=229.20 Aligned_cols=279 Identities=16% Similarity=0.295 Sum_probs=238.9
Q ss_pred eecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEEC--CCeEEEEEcC
Q 000936 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD--DYKIKVWNYK 81 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~--Dg~I~vWd~~ 81 (1219)
.|..-.++|.++.|+++|.+|++++.|.+++|||..+|+.++++..+.-.|..++|......++.++. |.+|+.-++.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 45556789999999999999999999999999999999999999888888999999877777776665 8899999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000936 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (1219)
Q Consensus 82 ~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~v 161 (1219)
+.+.++.+.||...|.+++.+|-+..++|++.|++|++||++..++...+.....+ .++|.|+|-+++++.....|++
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEE
Confidence 99999999999999999999999999999999999999999988888777644443 4789999999999998889999
Q ss_pred EECCCCccccccCCccceeeccccccccccccceEEEEEe-ecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 000936 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE-GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (1219)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~ 240 (1219)
||++...+.... .+.+. +.....+.+.|+|+|+.++.++..+.+.+.|.-++..
T Consensus 167 yD~Rs~dkgPF~-----------------------tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~-- 221 (311)
T KOG1446|consen 167 YDLRSFDKGPFT-----------------------TFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV-- 221 (311)
T ss_pred EEecccCCCCce-----------------------eEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE--
Confidence 999875443211 11111 4456788999999999999999999999999998886
Q ss_pred EEeecCCCCCe---EEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEec-CCCCEEEEEEeCCCCEEEEEe
Q 000936 241 VDTLRGHMNNV---SCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR-EHDRFWILASHPEMNLLAAGH 309 (1219)
Q Consensus 241 ~~~~~~h~~~I---~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~-~~~~i~~l~~sp~~~~la~g~ 309 (1219)
..++.++.+.- -..+|+||++++++|+.||+|.+|++.++..+..+++ +..++.++.|+|.-..+++++
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS 294 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC
Confidence 56666554432 5778999999999999999999999999999999988 477899999999877777654
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.3e-27 Score=262.52 Aligned_cols=361 Identities=20% Similarity=0.375 Sum_probs=273.2
Q ss_pred EEEEe-cCCCEEEEEECCCeEEEEEcCCC------eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC--e
Q 000936 56 GVHFH-KSQPLFVSGGDDYKIKVWNYKMH------RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR--T 126 (1219)
Q Consensus 56 ~l~fs-p~~~~Lasgs~Dg~I~vWd~~~~------~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~--~ 126 (1219)
.+..+ |.+++|.|||.||.|++|+.... ..+.++..|.+.|..+....+++.|+|+|.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 34444 46678999999999999998532 246778899999999999999999999999999999999877 5
Q ss_pred EEEEEecCCCCeEEEEE-ecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEE-eecC
Q 000936 127 CISVLTGHNHYVMCASF-HPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL-EGHD 204 (1219)
Q Consensus 127 ~i~~~~~h~~~V~~l~~-sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 204 (1219)
|..++..|..+|.|+++ .++...+++|+.|+.|.+||++++...... ..+......+ .|+.
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~-----------------s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVA-----------------SFNNVTVNSLGSGPK 171 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhh-----------------hccccccccCCCCCc
Confidence 78888999999999999 778889999999999999999986431110 0111111122 2888
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 000936 205 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ 284 (1219)
Q Consensus 205 ~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~ 284 (1219)
.+|.+++-+++|..|++|+..+.+++||.++.+. +..++||+.+|..+..++||+.++++|+||+|++||+...+++.
T Consensus 172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k--imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK--IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred cceeeeecCCcceEEEecCcccceEEeccccccc--eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceee
Confidence 9999999999999999999999999999999887 88899999999999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCC
Q 000936 285 TFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSL 364 (1219)
Q Consensus 285 ~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 364 (1219)
++..|.+.+|++..+|+-..+.+|+. ++.|..-|+.+...... -++. .+
T Consensus 250 T~~vH~e~VWaL~~~~sf~~vYsG~r--------------------------d~~i~~Tdl~n~~~~tl-ick~-da--- 298 (735)
T KOG0308|consen 250 TYIVHKEGVWALQSSPSFTHVYSGGR--------------------------DGNIYRTDLRNPAKSTL-ICKE-DA--- 298 (735)
T ss_pred eEEeccCceEEEeeCCCcceEEecCC--------------------------CCcEEecccCCchhheE-eecC-CC---
Confidence 99999999999999999888888874 55555666665322111 1111 11
Q ss_pred CCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCCc
Q 000936 365 NQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE 444 (1219)
Q Consensus 365 ~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~ 444 (1219)
++..+..+...+.+-+ ...++.|+-|..... ..+++.+++....+ +......+..+.
T Consensus 299 --Pv~~l~~~~~~~~~Wv--tTtds~I~rW~~~~~------------------~~l~~s~~~~~~~T-~~~~~~~~~~~t 355 (735)
T KOG0308|consen 299 --PVLKLHLHEHDNSVWV--TTTDSSIKRWKLEPD------------------IALSVSGDLDFFST-DSNNHSCDLTNT 355 (735)
T ss_pred --chhhhhhccccCCcee--eeccccceecCCccc------------------cccccCCCCCcccc-cCCCccccccCC
Confidence 6666777654444322 234577877765422 13334444443333 444445554443
Q ss_pred eeEeeeCCcceEEEEEeCCCcEEEEe--CCeEEEEEcCCCeEEEEEe
Q 000936 445 VVKKSILPIAADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQ 489 (1219)
Q Consensus 445 ~~~~i~~~~~v~~l~~s~dg~~L~s~--d~~I~l~dl~~~~~l~~~~ 489 (1219)
.-..+.+...+..-++-.|.+.+++. .|.+.+||+-....+..+.
T Consensus 356 p~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 356 PDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred CceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 44445444477777788888999995 5999999997666555443
No 80
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=8.2e-27 Score=231.85 Aligned_cols=290 Identities=19% Similarity=0.322 Sum_probs=250.9
Q ss_pred EEecccCCCEEEEEEec---CCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 000936 45 DRFDEHDGPVRGVHFHK---SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1219)
Q Consensus 45 ~~l~~h~~~V~~l~fsp---~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd 121 (1219)
.+..+|..||..++||| +|-+|++++.|+.-.+-+-++|..+.++.+|.+.|++...+.+....++++.|-+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 44568999999999986 788999999999999999999999999999999999999999998999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEe
Q 000936 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1219)
Q Consensus 122 ~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1219)
.-+|..+..+. |.+-|.+++|+.|.++|++|+.+..+||||++..+... ..+.
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App--------------------------~E~~ 140 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP--------------------------KEIS 140 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc--------------------------hhhc
Confidence 99999998887 89999999999999999999999999999998755432 2567
Q ss_pred ecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000936 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1219)
Q Consensus 202 ~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~ 281 (1219)
+|.++|..+.|....+.|++.++|++|++||.++++. +.++. ...+|+++.++++|++|.++. .+.|.+||..+..
T Consensus 141 ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~--v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE--VQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFG 216 (334)
T ss_pred CCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE--EEEEe-cCCCCcceeeccCCCEEEEec-CceeEEecccccc
Confidence 8999999999999999999999999999999999996 55554 457899999999998776654 5679999999988
Q ss_pred eEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCC
Q 000936 282 GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGS 361 (1219)
Q Consensus 282 ~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 361 (1219)
.+..++. ...|.+.+.+|+...+++|.. |..++.||+.++..+... ..++
T Consensus 217 ~lKs~k~-P~nV~SASL~P~k~~fVaGge--------------------------d~~~~kfDy~TgeEi~~~---nkgh 266 (334)
T KOG0278|consen 217 LLKSYKM-PCNVESASLHPKKEFFVAGGE--------------------------DFKVYKFDYNTGEEIGSY---NKGH 266 (334)
T ss_pred ceeeccC-ccccccccccCCCceEEecCc--------------------------ceEEEEEeccCCceeeec---ccCC
Confidence 8887763 456888999999998888874 667889999998875542 2233
Q ss_pred CCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCC
Q 000936 362 TSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDS 400 (1219)
Q Consensus 362 ~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~ 400 (1219)
.++|.++.|+|+|. +.+++++||+++||......
T Consensus 267 ---~gpVhcVrFSPdGE--~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 267 ---FGPVHCVRFSPDGE--LYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ---CCceEEEEECCCCc--eeeccCCCceEEEEEecCCC
Confidence 45999999999999 66778899999999986543
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=8.5e-26 Score=267.38 Aligned_cols=279 Identities=27% Similarity=0.489 Sum_probs=245.6
Q ss_pred cCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE-ecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE
Q 000936 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDR-FDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL 86 (1219)
Q Consensus 8 h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~-l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~ 86 (1219)
|...+.|..|+ ..++++++.+++|++||..++..+.. +.+|.+.|.++++..-+.++++|+.|.+++|||..+|.|.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 67788999999 55799999999999999999999888 9999999999999887889999999999999999999999
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCC
Q 000936 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA 166 (1219)
Q Consensus 87 ~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~ 166 (1219)
.++.+|.+.|.++...+. .+++|+.|.+|++|+++++.++..+.+|..+|.++..+ ++++++|+.|++|++||+.+
T Consensus 285 ~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred EEecCCCceEEEEEccCc--eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence 999999999999887654 68889999999999999999999999999999999998 88999999999999999986
Q ss_pred CccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-CeeeEEeec
Q 000936 167 LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-KAWEVDTLR 245 (1219)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~ 245 (1219)
++ +...+.+|...|.++.+.+. +.+++|+.|+.|++||+.+. ++ +.++.
T Consensus 361 ~~---------------------------cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c--~~tl~ 410 (537)
T KOG0274|consen 361 GK---------------------------CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC--IHTLQ 410 (537)
T ss_pred ce---------------------------eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh--hhhhc
Confidence 44 45588999999999988776 79999999999999999999 76 88999
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEec-CCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcce
Q 000936 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR-EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPA 324 (1219)
Q Consensus 246 ~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~-~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~ 324 (1219)
+|..-+..+.+ .+++|++++.|++|++||..++++++++.. +...++.+++. + ..++++.
T Consensus 411 ~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~-~~il~s~--------------- 471 (537)
T KOG0274|consen 411 GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-K-EEILCSS--------------- 471 (537)
T ss_pred CCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-c-ceEEEEe---------------
Confidence 99998877665 578999999999999999999999999988 55777777665 2 2233332
Q ss_pred EEecCCEEEEEeCCeEEEEEecCCccee
Q 000936 325 FAVSGDSLFYAKDRFLRYYEFSTQKDTQ 352 (1219)
Q Consensus 325 ~s~~~~~l~~~~d~~i~v~d~~~~~~~~ 352 (1219)
.++.+++||+.+++...
T Consensus 472 -----------~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 472 -----------DDGSVKLWDLRSGTLIR 488 (537)
T ss_pred -----------cCCeeEEEecccCchhh
Confidence 47788888888877654
No 82
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=4e-25 Score=261.88 Aligned_cols=266 Identities=16% Similarity=0.228 Sum_probs=210.7
Q ss_pred cCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE-------------EEecccCCCEEEEEEec-CCCEEEEEECCC
Q 000936 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI-------------DRFDEHDGPVRGVHFHK-SQPLFVSGGDDY 73 (1219)
Q Consensus 8 h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i-------------~~l~~h~~~V~~l~fsp-~~~~Lasgs~Dg 73 (1219)
|-..|+....++++..+++++.+.....|+...+..+ ..+.+|.++|++++|+| ++.+|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4455666677778776777777777777875444322 13678999999999999 888999999999
Q ss_pred eEEEEEcCCC-------eEEEEEccCCCCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEec
Q 000936 74 KIKVWNYKMH-------RCLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP 145 (1219)
Q Consensus 74 ~I~vWd~~~~-------~~~~~l~~h~~~I~~l~fs~d~-~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp 145 (1219)
+|++||+.++ .++..+.+|...|.+++|+|++ ++|++++.|++|+|||+.+++.+..+.+|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999764 3567889999999999999986 6999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCC-eEEEEEcCCCCEEEEEe-
Q 000936 146 KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG-VNWAAFHPTLPLIVSGA- 223 (1219)
Q Consensus 146 ~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-V~~l~~sp~g~~l~sg~- 223 (1219)
++++|++++.|++|++||+++++. ...+.+|.+. +..+.|++++..+++++
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~---------------------------v~tl~~H~~~~~~~~~w~~~~~~ivt~G~ 231 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTI---------------------------VSSVEAHASAKSQRCLWAKRKDLIITLGC 231 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcE---------------------------EEEEecCCCCcceEEEEcCCCCeEEEEec
Confidence 999999999999999999987542 2345667654 45678899888777654
Q ss_pred ---CCCeEEEEECCCCCeeeEEeecC-CCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeeEEEEec-CCCCEEEEE
Q 000936 224 ---DDRQVKLWRMNETKAWEVDTLRG-HMNNVSCVMFHAKQDIIVSNS-EDKSIRVWDVTKRTGVQTFRR-EHDRFWILA 297 (1219)
Q Consensus 224 ---~dg~I~iwd~~~~~~~~~~~~~~-h~~~I~~l~~sp~g~~L~s~s-~dg~I~iwdl~~~~~~~~~~~-~~~~i~~l~ 297 (1219)
.|+.|++||++.... ++..... +...+....|++++++|++++ .|+.|++||+.++..+..... .......++
T Consensus 232 s~s~Dr~VklWDlr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~ 310 (493)
T PTZ00421 232 SKSQQRQIMLWDTRKMAS-PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLC 310 (493)
T ss_pred CCCCCCeEEEEeCCCCCC-ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceE
Confidence 479999999987543 1333332 334566678899999999887 599999999999887665543 334566777
Q ss_pred EeCC
Q 000936 298 SHPE 301 (1219)
Q Consensus 298 ~sp~ 301 (1219)
+.|.
T Consensus 311 ~~pk 314 (493)
T PTZ00421 311 MMPK 314 (493)
T ss_pred eccc
Confidence 7774
No 83
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.1e-26 Score=265.58 Aligned_cols=255 Identities=18% Similarity=0.370 Sum_probs=208.2
Q ss_pred cceec-ccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCC--------------------------------C-------
Q 000936 2 LTKFE-TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM--------------------------------G------- 41 (1219)
Q Consensus 2 l~~l~-~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~--------------------------------g------- 41 (1219)
.+++. .|.+.|.+|.||+||+|||+||.||.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 45677 8999999999999999999999999999998754 0
Q ss_pred ---------------------eEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEE
Q 000936 42 ---------------------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100 (1219)
Q Consensus 42 ---------------------~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~ 100 (1219)
+++..|.+|.+.|..|.||.++ +|++++-|.+|++|++....|+..|. |.+.|+|++
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence 1334567899999999999876 89999999999999999999999987 999999999
Q ss_pred EcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccce
Q 000936 101 FHH-EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIL 179 (1219)
Q Consensus 101 fs~-d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~ 179 (1219)
|+| |.+++++|+-||.||||++...+.+.-... ..-|++++|.|+|+..++|+.+|.+++|+....+.......
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I---- 491 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI---- 491 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE----
Confidence 999 567999999999999999987766655444 47899999999999999999999999999988665432100
Q ss_pred eeccccccccccccceEEEEEeecCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeEEeecCCCC--CeEEEEE
Q 000936 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMN--NVSCVMF 256 (1219)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~--~I~~l~~ 256 (1219)
... + . .-..|. .|+.+.|.|... .+++.+.|..|+|+|.++... +..++|+.+ .-....|
T Consensus 492 ~~~--~-----------~-Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l--v~KfKG~~n~~SQ~~Asf 554 (712)
T KOG0283|consen 492 RLH--N-----------K-KKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL--VHKFKGFRNTSSQISASF 554 (712)
T ss_pred eec--c-----------C-ccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhh--hhhhcccccCCcceeeeE
Confidence 000 0 0 011123 799999998554 477778899999999988776 667776543 2345689
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCC
Q 000936 257 HAKQDIIVSNSEDKSIRVWDVTKR 280 (1219)
Q Consensus 257 sp~g~~L~s~s~dg~I~iwdl~~~ 280 (1219)
+.||++|+++++|..|++|+....
T Consensus 555 s~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 555 SSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccCCCEEEEeecCceEEEEeCCCC
Confidence 999999999999999999998543
No 84
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=9.8e-26 Score=267.53 Aligned_cols=292 Identities=21% Similarity=0.297 Sum_probs=236.5
Q ss_pred cCCCEEEEEEeCCCCEEEEEE--CCCeEEEEECCC------------CeEEEEecccCCCEEEEEEecCCCEEEEEECCC
Q 000936 8 KSNRVKGLSFHSKRPWILASL--HSGVIQLWDYRM------------GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY 73 (1219)
Q Consensus 8 h~~~V~~i~fspdg~~Lasg~--~dg~I~iWd~~~------------g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg 73 (1219)
+..+|.+|+.||||..+++|+ .||.++||+.+. .+.+.+...|.+.|+|+.|+|||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456789999999999999999 899999998642 244567788999999999999999999999999
Q ss_pred eEEEEEcCC------------------CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC
Q 000936 74 KIKVWNYKM------------------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHN 135 (1219)
Q Consensus 74 ~I~vWd~~~------------------~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~ 135 (1219)
.|.||.... .+++..+.+|...|..++|+|++.++++++.|++|.|||..+.+.+.++.+|.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999998762 24778889999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCC
Q 000936 136 HYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (1219)
Q Consensus 136 ~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~ 215 (1219)
+.|..+.|.|-|+++++-+.|++|+||++........... .+.-..-...+..+.|+||
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~---------------------pf~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITK---------------------PFEESPLTTFFLRLSWSPD 230 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeecc---------------------chhhCCCcceeeecccCCC
Confidence 9999999999999999999999999999765322211100 0000112334677999999
Q ss_pred CCEEEEEeC----CCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccC-----CC------------EEEEEeCCCcEEE
Q 000936 216 LPLIVSGAD----DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-----QD------------IIVSNSEDKSIRV 274 (1219)
Q Consensus 216 g~~l~sg~~----dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~-----g~------------~L~s~s~dg~I~i 274 (1219)
|.+|++... -.++.|.+..+-+. -..+-||..++.++.|+|. .+ .+++|+.|++|.|
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tWk~--~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV 308 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTWKV--DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV 308 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCcee--eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence 999998643 34677877766554 6778999999999999982 11 6789999999999
Q ss_pred EeCCCCeeEEEEe-cCCCCEEEEEEeCCCCEEEEE-eCCCeeEEEecCCc
Q 000936 275 WDVTKRTGVQTFR-REHDRFWILASHPEMNLLAAG-HDSGMIVFKLERER 322 (1219)
Q Consensus 275 wdl~~~~~~~~~~-~~~~~i~~l~~sp~~~~la~g-~d~gi~v~~l~~~~ 322 (1219)
|.....+++.... ..+..|..++|+|||..|.++ .|+.+.++.++.+.
T Consensus 309 W~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 309 WNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 9988777765543 345689999999999866555 56666677766543
No 85
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.4e-26 Score=233.19 Aligned_cols=291 Identities=23% Similarity=0.412 Sum_probs=247.2
Q ss_pred CcceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 000936 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 1 ml~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1219)
+++.|+||.+.|..++-....+.+.+++.|.+-+||.+++|.++.++.+|.+.|.+|.||+.+.++++++.|++-.||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999951
Q ss_pred ------CC----------------------------------CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 000936 81 ------KM----------------------------------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120 (1219)
Q Consensus 81 ------~~----------------------------------~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iw 120 (1219)
.. ..++..+.+|.+.|.+..|-..++.+++++.|.+..+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 00 02456788999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEE
Q 000936 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1219)
Q Consensus 121 d~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1219)
|+++|..+..+.||.+..+.++-+|..+++++++.|.+.++||++..-. ...++
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~--------------------------sV~VF 353 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ--------------------------SVAVF 353 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc--------------------------eeeee
Confidence 9999999999999999999999999999999999999999999974111 23478
Q ss_pred eecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000936 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1219)
Q Consensus 201 ~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~ 280 (1219)
.||...|+++.|..+. .+++|++|.+|++||+++... ++.+++ ...++..++.+..+..|+.--.+..|++||++..
T Consensus 354 QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRs-plATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRS-PLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred cccccceeEEEEecCC-ceeecCCCceEEEeeeccccC-cceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 9999999999999875 699999999999999988764 355555 4567889999988889999888999999999754
Q ss_pred eeEE----EEecCCCCEEEEEEeC---CCCEEEEEeCCCeeEEEecC
Q 000936 281 TGVQ----TFRREHDRFWILASHP---EMNLLAAGHDSGMIVFKLER 320 (1219)
Q Consensus 281 ~~~~----~~~~~~~~i~~l~~sp---~~~~la~g~d~gi~v~~l~~ 320 (1219)
.... .-++|..-+.+.+|.. -.+++.+|.|..+.-|++..
T Consensus 431 RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 431 RLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 4322 2235566688999865 45677777776666666543
No 86
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9.7e-26 Score=243.20 Aligned_cols=278 Identities=19% Similarity=0.330 Sum_probs=239.3
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE----EE------------e--cccCCCEEEEEEecCCC
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI----DR------------F--DEHDGPVRGVHFHKSQP 64 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i----~~------------l--~~h~~~V~~l~fsp~~~ 64 (1219)
+.+..|.-+|+|++++|+.++..+++.+|+|.=|++.+|+.. .+ . +.|...|.+++.|+||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 456789999999999999999999999999999999888633 11 0 26788899999999999
Q ss_pred EEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEe
Q 000936 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFH 144 (1219)
Q Consensus 65 ~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~s 144 (1219)
+|++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....+++++.|++|++|+++....+.++.+|.+.|..+.-.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred cCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeC
Q 000936 145 PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (1219)
Q Consensus 145 p~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~ 224 (1219)
..++.+-+|+.|+++++|++... ...++.+|.+.+-|++|-.+ ..+++|++
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~ee----------------------------sqlifrg~~~sidcv~~In~-~HfvsGSd 346 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPEE----------------------------SQLIFRGGEGSIDCVAFIND-EHFVSGSD 346 (479)
T ss_pred cccceEEeccccceeEEEecccc----------------------------ceeeeeCCCCCeeeEEEecc-cceeeccC
Confidence 88888888889999999999431 23467788999999999877 57999999
Q ss_pred CCeEEEEECCCCCeeeEEeec----------CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----eeEEEEecCC
Q 000936 225 DRQVKLWRMNETKAWEVDTLR----------GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR----TGVQTFRREH 290 (1219)
Q Consensus 225 dg~I~iwd~~~~~~~~~~~~~----------~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~----~~~~~~~~~~ 290 (1219)
+|.|.+|++...++..+.... .+..+|++++..|..+++++|+.+|.|++|.+..+ .++..+. -.
T Consensus 347 nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~ 425 (479)
T KOG0299|consen 347 NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LV 425 (479)
T ss_pred CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cc
Confidence 999999999988763322211 12237999999999999999999999999999877 3344444 55
Q ss_pred CCEEEEEEeCCCCEEEEEeC
Q 000936 291 DRFWILASHPEMNLLAAGHD 310 (1219)
Q Consensus 291 ~~i~~l~~sp~~~~la~g~d 310 (1219)
+-|++++|+++|..+++|..
T Consensus 426 GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 426 GFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred cEEEEEEEccCCCEEEEecc
Confidence 77999999999998877753
No 87
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.3e-26 Score=237.42 Aligned_cols=284 Identities=23% Similarity=0.346 Sum_probs=234.7
Q ss_pred ccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE--------ccCCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 000936 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL--------LGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120 (1219)
Q Consensus 49 ~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l--------~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iw 120 (1219)
+..+.+.|..|||||++|++|+-||.|.|||+.+|+....+ .-+.+.|.|+.||.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 34566889999999999999999999999999998765433 3477899999999999999999999999999
Q ss_pred ECCCCeEEEEEe-cCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEE
Q 000936 121 NWQSRTCISVLT-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV 199 (1219)
Q Consensus 121 d~~s~~~i~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1219)
.+.+|.|++.+. .|+..|+|+.|+.|+..+++++.|.++|+.-+.+++... .
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK---------------------------E 343 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK---------------------------E 343 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH---------------------------H
Confidence 999999999996 899999999999999999999999999999998876543 5
Q ss_pred EeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC
Q 000936 200 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA-KQDIIVSNSEDKSIRVWDVT 278 (1219)
Q Consensus 200 ~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp-~g~~L~s~s~dg~I~iwdl~ 278 (1219)
+.||.+-|+.+.|.++|..+++++.||+|++|+..+..+.......+...+|.++..-| +...++++...++|.|.++.
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 78999999999999999999999999999999999998843333445666788888777 45789999999999999975
Q ss_pred CCeeEEEEec---CCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEe
Q 000936 279 KRTGVQTFRR---EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (1219)
Q Consensus 279 ~~~~~~~~~~---~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~ 355 (1219)
|+.+.++.. ..+.+.+.+.||.|.++.+.. .|+.++.|...+|+....+.
T Consensus 424 -GQvVrsfsSGkREgGdFi~~~lSpkGewiYcig--------------------------ED~vlYCF~~~sG~LE~tl~ 476 (508)
T KOG0275|consen 424 -GQVVRSFSSGKREGGDFINAILSPKGEWIYCIG--------------------------EDGVLYCFSVLSGKLERTLP 476 (508)
T ss_pred -ceEEeeeccCCccCCceEEEEecCCCcEEEEEc--------------------------cCcEEEEEEeecCceeeeee
Confidence 677777653 345677777888877766555 46677788888887766665
Q ss_pred ecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEE
Q 000936 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1219)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~ 395 (1219)
+.. . .+-.++-+|..+.+ ++-++||.+++|.
T Consensus 477 VhE----k---dvIGl~HHPHqNll--AsYsEDgllKLWk 507 (508)
T KOG0275|consen 477 VHE----K---DVIGLTHHPHQNLL--ASYSEDGLLKLWK 507 (508)
T ss_pred ccc----c---cccccccCcccchh--hhhcccchhhhcC
Confidence 543 2 56678888987744 4445788998884
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=246.54 Aligned_cols=275 Identities=19% Similarity=0.302 Sum_probs=237.2
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCe--EEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~--~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1219)
..+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.++.+..++|+.+.|.++++.+++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 3577899999999999999999999999999999987665 77888889999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEE
Q 000936 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1219)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~ 160 (1219)
.+.+...++.||.+.|+++.|......+++|+.|.+|+.||++...|..++.. .+.+..+..+ ...+++|..|+.||
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceE
Confidence 99999999999999999999998888899999999999999999888877652 3445555554 55789999999999
Q ss_pred EEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 000936 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (1219)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~ 240 (1219)
+||+++..... ....+ +.|+++..+++|..+.+++.|.++.+.|+++...
T Consensus 326 fwD~Rs~~~~~---------------------------sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI-- 375 (459)
T KOG0288|consen 326 FWDIRSADKTR---------------------------SVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI-- 375 (459)
T ss_pred EEeccCCceee---------------------------EeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccE--
Confidence 99998855432 33333 4899999999999999999999999999999886
Q ss_pred EEeecC----CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCC--EEEEEEeCCCCEEEEEeC
Q 000936 241 VDTLRG----HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR--FWILASHPEMNLLAAGHD 310 (1219)
Q Consensus 241 ~~~~~~----h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~--i~~l~~sp~~~~la~g~d 310 (1219)
...+.. .....+.+.|||++.|+++||.||.|+||++.++++.......... |++++|+|.|..+++++.
T Consensus 376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 333322 1234889999999999999999999999999999998888766655 999999999998877664
No 89
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=242.87 Aligned_cols=284 Identities=15% Similarity=0.272 Sum_probs=227.6
Q ss_pred eecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCC----eEEEEec-ccCCCEEEEEEecCCCEEEEEECCCeEEEE
Q 000936 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG----TLIDRFD-EHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g----~~i~~l~-~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vW 78 (1219)
+|.+|+..|.++++.|.|-.+++|+.|.+|++||+... +..+.+. .....|+++.|+++|..|++.+.....+|+
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~ 241 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL 241 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence 67899999999999999999999999999999998643 1122222 244578999999999988888888899999
Q ss_pred EcCCCeEEE------------EEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCe-EEEEEe-----cCCCCeE
Q 000936 79 NYKMHRCLF------------TLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRT-CISVLT-----GHNHYVM 139 (1219)
Q Consensus 79 d~~~~~~~~------------~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~-~i~~~~-----~h~~~V~ 139 (1219)
|-.....+. .-+||...++|.+|+|..+ .+++++.||++||||+...+ ...+++ +..-+++
T Consensus 242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred ccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence 955333222 2258999999999999876 78999999999999997543 333332 3445789
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCC--CeEEEEEcCCCC
Q 000936 140 CASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR--GVNWAAFHPTLP 217 (1219)
Q Consensus 140 ~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~V~~l~~sp~g~ 217 (1219)
+++|+|+|++|++|+.||.|.+|+..+..... ...+-..|.. .|+|+.|+++|+
T Consensus 322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p------------------------~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP------------------------VMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred eeecCCCcchhhhcccCCceeeeecCCccccc------------------------ceEeeeccCCCCceeEEEeccccc
Confidence 99999999999999999999999986533221 2345667877 899999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEEeecCC--CCCeEEEEEccCCCEEEEEeC------CCcEEEEeCCCCeeEEEEecC
Q 000936 218 LIVSGADDRQVKLWRMNETKAWEVDTLRGH--MNNVSCVMFHAKQDIIVSNSE------DKSIRVWDVTKRTGVQTFRRE 289 (1219)
Q Consensus 218 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h--~~~I~~l~~sp~g~~L~s~s~------dg~I~iwdl~~~~~~~~~~~~ 289 (1219)
+|++-+.|+++++||++..+. ++....+- ..+-+.++|||+.++|++|+. .|.+.+||..+...++.+...
T Consensus 378 ~LlSRg~D~tLKvWDLrq~kk-pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 378 YLLSRGFDDTLKVWDLRQFKK-PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred hhhhccCCCceeeeecccccc-chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence 999999999999999998664 23333332 234578899999999999863 568999999999999999888
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCC
Q 000936 290 HDRFWILASHPEMNLLAAGHDSG 312 (1219)
Q Consensus 290 ~~~i~~l~~sp~~~~la~g~d~g 312 (1219)
...|..+.|||.-+.+.+|+.+|
T Consensus 457 ~aSvv~~~WhpkLNQi~~gsgdG 479 (641)
T KOG0772|consen 457 TASVVRCLWHPKLNQIFAGSGDG 479 (641)
T ss_pred CceEEEEeecchhhheeeecCCC
Confidence 88899999999988888776544
No 90
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.7e-25 Score=251.82 Aligned_cols=281 Identities=22% Similarity=0.425 Sum_probs=244.1
Q ss_pred cceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE--EEecccCCCEEE-EEEec-CCCEEEEEECCCeEEE
Q 000936 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI--DRFDEHDGPVRG-VHFHK-SQPLFVSGGDDYKIKV 77 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i--~~l~~h~~~V~~-l~fsp-~~~~Lasgs~Dg~I~v 77 (1219)
-+.++||+..|+.+++.+.. ++++++.||++++|+-..++.+ ..+.+|.+-|.. +++-+ ++-++++|+.|.+|.+
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 35789999999999987654 8999999999999997655544 456788888877 88876 4457999999999999
Q ss_pred EEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCC
Q 000936 78 WNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (1219)
Q Consensus 78 Wd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg 157 (1219)
|...+..++.++.+|...|.++....++. ++|||.|.++++|.. +++...+.+|+..|+++.+.|.+ .++|||.|.
T Consensus 86 ~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDK 161 (745)
T KOG0301|consen 86 FKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADK 161 (745)
T ss_pred EecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcc
Confidence 99999999999999999999999888886 999999999999964 66777899999999999999987 899999999
Q ss_pred eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 000936 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (1219)
Q Consensus 158 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~ 237 (1219)
+|++|.-.+ ...++.+|...|..+++-+++ .|++++.||.|++|++....
T Consensus 162 tIklWk~~~-----------------------------~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~ 211 (745)
T KOG0301|consen 162 TIKLWKGGT-----------------------------LLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEV 211 (745)
T ss_pred eeeeccCCc-----------------------------hhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCce
Confidence 999998644 334788999999999999985 58999999999999995444
Q ss_pred eeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEE
Q 000936 238 AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFK 317 (1219)
Q Consensus 238 ~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~ 317 (1219)
+....+|++-|.++...+++..++++++|++++||+.. .+.+.+..+...+|++.+-++|.+++.|+|+.++||.
T Consensus 212 ---l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 212 ---LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFT 286 (745)
T ss_pred ---eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEE
Confidence 78899999999999988889999999999999999865 8888998888899999999999988888877766666
Q ss_pred ecCCc
Q 000936 318 LERER 322 (1219)
Q Consensus 318 l~~~~ 322 (1219)
.+..+
T Consensus 287 ~~k~R 291 (745)
T KOG0301|consen 287 VDKDR 291 (745)
T ss_pred ecccc
Confidence 55443
No 91
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=259.15 Aligned_cols=246 Identities=21% Similarity=0.397 Sum_probs=198.2
Q ss_pred EEEEec-ccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC--------------------------------C------
Q 000936 43 LIDRFD-EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM--------------------------------H------ 83 (1219)
Q Consensus 43 ~i~~l~-~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~--------------------------------~------ 83 (1219)
..+.+. .|.+.|.++.||+||+|||+||.|+.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 334555 8999999999999999999999999999997654 0
Q ss_pred ----------------------eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEE
Q 000936 84 ----------------------RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA 141 (1219)
Q Consensus 84 ----------------------~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l 141 (1219)
+++..+.||.+.|..+.||.++ +|+++|.|.||++|++...+|+++|. |+..|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 1223556899999999999876 89999999999999999999999998 99999999
Q ss_pred EEec-CCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEE
Q 000936 142 SFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220 (1219)
Q Consensus 142 ~~sp-~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~ 220 (1219)
+|+| |.+++++|+.||.||+|++...+.. ....-..-|++++|.|+|+..+
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv----------------------------~W~Dl~~lITAvcy~PdGk~av 467 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVV----------------------------DWNDLRDLITAVCYSPDGKGAV 467 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeE----------------------------eehhhhhhheeEEeccCCceEE
Confidence 9999 4589999999999999999774432 1222336799999999999999
Q ss_pred EEeCCCeEEEEECCCCCeeeEEeecCC------CCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC--
Q 000936 221 SGADDRQVKLWRMNETKAWEVDTLRGH------MNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD-- 291 (1219)
Q Consensus 221 sg~~dg~I~iwd~~~~~~~~~~~~~~h------~~~I~~l~~sp~-g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~-- 291 (1219)
+|+.+|..++|+....+...-..+..| ...|+++.|.|. ...+++.+.|..|||+|.++...+..|++...
T Consensus 468 IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~ 547 (712)
T KOG0283|consen 468 IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS 547 (712)
T ss_pred EEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC
Confidence 999999999999998876332223222 227999999974 34688888999999999988888888886543
Q ss_pred CEEEEEEeCCCCEEEEEeC-CCeeEEEe
Q 000936 292 RFWILASHPEMNLLAAGHD-SGMIVFKL 318 (1219)
Q Consensus 292 ~i~~l~~sp~~~~la~g~d-~gi~v~~l 318 (1219)
.-....|+.||++|+++++ ..+++|+.
T Consensus 548 SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 548 SQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred cceeeeEccCCCEEEEeecCceEEEEeC
Confidence 2345678889999998874 23444443
No 92
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.6e-25 Score=225.17 Aligned_cols=243 Identities=19% Similarity=0.334 Sum_probs=207.9
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCC--EEEEEECCCeEEEEEc
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP--LFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~--~Lasgs~Dg~I~vWd~ 80 (1219)
-.++.|.+.|++++.+ ++|+|+|+.|-+|+|||+.....+..+-.|.+.|+++.|.+.-. .|++|++||.|.+|+.
T Consensus 37 F~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred ccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 3578999999999987 99999999999999999999999999999999999999998765 8999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEE
Q 000936 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1219)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~ 160 (1219)
....++.++++|.+.|+.++.||.+++-++.+.|+.++.||+-+|+.-..+.- ...-+.+.|+|.|++++.++.+ .|-
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~ 192 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KID 192 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEE
Confidence 99999999999999999999999999999999999999999998887666552 2334559999999988888765 588
Q ss_pred EEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 000936 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (1219)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~ 240 (1219)
+|.+.+...... ......+.++.|.. +..+++|++|+.|.+||.++..+
T Consensus 193 i~q~d~A~v~~~----------------------------i~~~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~-- 241 (362)
T KOG0294|consen 193 IYQLDNASVFRE----------------------------IENPKRILCATFLD-GSELLVGGDNEWISLKDTDSDTP-- 241 (362)
T ss_pred EEecccHhHhhh----------------------------hhccccceeeeecC-CceEEEecCCceEEEeccCCCcc--
Confidence 998876432211 01124456666654 46899999999999999998765
Q ss_pred EEeecCCCCCeEEEEE--ccCCCEEEEEeCCCcEEEEeCCCC
Q 000936 241 VDTLRGHMNNVSCVMF--HAKQDIIVSNSEDKSIRVWDVTKR 280 (1219)
Q Consensus 241 ~~~~~~h~~~I~~l~~--sp~g~~L~s~s~dg~I~iwdl~~~ 280 (1219)
...+.+|.+.|.++.+ .|++.+|+++|+||.|+|||++..
T Consensus 242 ~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 242 LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 8889999999999885 467889999999999999998865
No 93
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=4.2e-24 Score=253.67 Aligned_cols=247 Identities=15% Similarity=0.225 Sum_probs=194.9
Q ss_pred EECCCeEEEEECCCCeEEEEecccCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCCCe--------EEEEEccCCCCEE
Q 000936 27 SLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYKMHR--------CLFTLLGHLDYIR 97 (1219)
Q Consensus 27 g~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~-~~~Lasgs~Dg~I~vWd~~~~~--------~~~~l~~h~~~I~ 97 (1219)
|+.+|.|++|+......+..+.+|.++|.+++|+|+ +.+|++|+.|++|+|||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 456788999998887888899999999999999997 7899999999999999997542 3456789999999
Q ss_pred EEEEcCCCCE-EEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCc
Q 000936 98 TVQFHHEYPW-IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176 (1219)
Q Consensus 98 ~l~fs~d~~~-l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~ 176 (1219)
+++|+|++.. +++++.|++|++||+.+++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+++++.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~------- 201 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI------- 201 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE-------
Confidence 9999999875 5789999999999999998877776 667899999999999999999999999999987543
Q ss_pred cceeeccccccccccccceEEEEEeecCCCeEE-----EEEcCCCCEEEEEeCCC----eEEEEECCC-CCeeeEEeecC
Q 000936 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW-----AAFHPTLPLIVSGADDR----QVKLWRMNE-TKAWEVDTLRG 246 (1219)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-----l~~sp~g~~l~sg~~dg----~I~iwd~~~-~~~~~~~~~~~ 246 (1219)
...+.+|.+.+.. ..|++++.++++++.|+ .|++||++. .+......+..
T Consensus 202 --------------------i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~ 261 (568)
T PTZ00420 202 --------------------ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN 261 (568)
T ss_pred --------------------EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC
Confidence 2356677765433 34568888999988764 799999985 44322233344
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE--EEecCCCCEEEEEEeCCC
Q 000936 247 HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ--TFRREHDRFWILASHPEM 302 (1219)
Q Consensus 247 h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~--~~~~~~~~i~~l~~sp~~ 302 (1219)
+.+.+......++|.++++|+.|++|++|++..+.... .+. +..++.+++|.|..
T Consensus 262 ~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 262 ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 44444444455678999999999999999998764321 222 44567778888864
No 94
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=3.4e-25 Score=233.35 Aligned_cols=249 Identities=28% Similarity=0.465 Sum_probs=216.7
Q ss_pred cceecccCCCEEEEEEeCCCC---EEEEEECCCeEEEEECCCCeEE----EEecccCCCEEEEEEecCCCEEEEEECCCe
Q 000936 2 LTKFETKSNRVKGLSFHSKRP---WILASLHSGVIQLWDYRMGTLI----DRFDEHDGPVRGVHFHKSQPLFVSGGDDYK 74 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspdg~---~Lasg~~dg~I~iWd~~~g~~i----~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~ 74 (1219)
...+.||+++|..++|.-..+ .+++++.|.++++|.++.+... ..-.+|...|-+++..++|..+++|+-|.+
T Consensus 137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~ 216 (423)
T KOG0313|consen 137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTM 216 (423)
T ss_pred EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccce
Confidence 357889999999999865444 5999999999999999877543 233599999999999999999999999999
Q ss_pred EEEEEcC-------------------------CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 000936 75 IKVWNYK-------------------------MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (1219)
Q Consensus 75 I~vWd~~-------------------------~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~ 129 (1219)
|++|+.. ++.++.++.||..+|.++.|++ ...+++++.|.+|+.||+.++.++.
T Consensus 217 lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~ 295 (423)
T KOG0313|consen 217 LKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKS 295 (423)
T ss_pred eeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccccee
Confidence 9999931 1235668899999999999998 5689999999999999999999998
Q ss_pred EEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEE
Q 000936 130 VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW 209 (1219)
Q Consensus 130 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 209 (1219)
.+.+ +..+.|+..+|..++|++|+.|..+++||.+++. ...+.+.+.+|...|.+
T Consensus 296 ~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~------------------------gs~v~~s~~gH~nwVss 350 (423)
T KOG0313|consen 296 TLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD------------------------GSVVSQSLIGHKNWVSS 350 (423)
T ss_pred eeec-CcceeEeecccccceeeecCCCCceeecCCCCCC------------------------CceeEEeeecchhhhhh
Confidence 8885 5678999999999999999999999999998853 23467789999999999
Q ss_pred EEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000936 210 AAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1219)
Q Consensus 210 l~~sp~g~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~ 278 (1219)
+.|+|... .|++|+.|+++++||+++.+. ++..+.+|...|.++.|. ++.+|++|+.|.+|+|+.-.
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~-plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKA-PLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCC-cceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99999664 688999999999999998874 388999999999999998 56789999999999998643
No 95
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=2.4e-24 Score=255.26 Aligned_cols=229 Identities=14% Similarity=0.274 Sum_probs=190.9
Q ss_pred eecccCCCEEEEEEeC-CCCEEEEEECCCeEEEEECCCC-------eEEEEecccCCCEEEEEEecCC-CEEEEEECCCe
Q 000936 4 KFETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMG-------TLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYK 74 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fsp-dg~~Lasg~~dg~I~iWd~~~g-------~~i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~ 74 (1219)
.+.||++.|.+++|+| ++++|++|+.||+|++||+.++ +.+..+.+|...|.+++|+|++ .+|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999765 3567888999999999999985 69999999999
Q ss_pred EEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC-eEEEEEecCCCEEEEE
Q 000936 75 IKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHY-VMCASFHPKEDLVVSA 153 (1219)
Q Consensus 75 I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~-V~~l~~sp~~~~l~s~ 153 (1219)
|+|||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+++++.+..+.+|.+. +..+.|.++++.++++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999989765 4567899988888776
Q ss_pred E----CCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEe-ecCCCeEEEEEcCCCCEEEEEe-CCCe
Q 000936 154 S----LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE-GHDRGVNWAAFHPTLPLIVSGA-DDRQ 227 (1219)
Q Consensus 154 s----~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~l~~sp~g~~l~sg~-~dg~ 227 (1219)
+ .|+.|++||++...... .... .+...+....|+++++++++++ .|+.
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~--------------------------~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~ 283 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPY--------------------------STVDLDQSSALFIPFFDEDTNLLYIGSKGEGN 283 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCce--------------------------eEeccCCCCceEEEEEcCCCCEEEEEEeCCCe
Confidence 4 47899999998643211 0111 2334566678999999998887 5999
Q ss_pred EEEEECCCCCeeeEEeec-CCCCCeEEEEEccCC
Q 000936 228 VKLWRMNETKAWEVDTLR-GHMNNVSCVMFHAKQ 260 (1219)
Q Consensus 228 I~iwd~~~~~~~~~~~~~-~h~~~I~~l~~sp~g 260 (1219)
|++||+.++.. +.... .+..++..++|.|..
T Consensus 284 Iriwdl~~~~~--~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 284 IRCFELMNERL--TFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEEEEeeCCce--EEEeeccCCCCCcceEecccc
Confidence 99999998875 33222 244567788888743
No 96
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-23 Score=218.46 Aligned_cols=292 Identities=18% Similarity=0.274 Sum_probs=238.3
Q ss_pred eEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC--CCeEEE
Q 000936 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD--DQTIRI 119 (1219)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~--Dg~I~i 119 (1219)
+..+.|....+.|.++.|+++|.++++++.|.++++||..+++++.++..+...+..++|......++.++. |.+||.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 344566667889999999999999999999999999999999999999988889999999888887777776 889999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEE
Q 000936 120 WNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV 199 (1219)
Q Consensus 120 wd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1219)
.++.+.+.++.+.||...|.+++.+|-++.+++++.|++|++||++..+...
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg---------------------------- 136 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG---------------------------- 136 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce----------------------------
Confidence 9999999999999999999999999999999999999999999998644321
Q ss_pred EeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeec---CCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 000936 200 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR---GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (1219)
Q Consensus 200 ~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~---~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwd 276 (1219)
.-+..+-..++|.|.|-++|++...+.|++||++.-..-+..++. +.....+.+.|||||++|+.++..+.+.+.|
T Consensus 137 -~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 137 -LLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLD 215 (311)
T ss_pred -EEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEE
Confidence 112333456899999999999998889999999875433344433 3456789999999999999999999999999
Q ss_pred CCCCeeEEEEecCCCCE---EEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceee
Q 000936 277 VTKRTGVQTFRREHDRF---WILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (1219)
Q Consensus 277 l~~~~~~~~~~~~~~~i---~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~ 353 (1219)
.-+|....++..+...- ...+++||++++.+|++ |++|.+|++.++.....
T Consensus 216 Af~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~--------------------------dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 216 AFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD--------------------------DGTIHVWNLETGKKVAV 269 (311)
T ss_pred ccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC--------------------------CCcEEEEEcCCCcEeeE
Confidence 99999998887665432 56788999999999985 67889999988877544
Q ss_pred EeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecC
Q 000936 354 IPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1219)
Q Consensus 354 ~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~ 398 (1219)
..-. + .++++++.|+|.-.+++ +. +..+.+|-...
T Consensus 270 ~~~~---~---~~~~~~~~fnP~~~mf~--sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 270 LRGP---N---GGPVSCVRFNPRYAMFV--SA--SSNLVFWLPDE 304 (311)
T ss_pred ecCC---C---CCCccccccCCceeeee--ec--CceEEEEeccc
Confidence 4332 1 22888899999754333 22 25777886553
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=8e-25 Score=224.18 Aligned_cols=273 Identities=18% Similarity=0.299 Sum_probs=224.5
Q ss_pred cCCCEEEEEEeC-CCCEEEEEECCCeEEEEECCC-CeEEE-EecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe
Q 000936 8 KSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRM-GTLID-RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (1219)
Q Consensus 8 h~~~V~~i~fsp-dg~~Lasg~~dg~I~iWd~~~-g~~i~-~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~ 84 (1219)
-.+.|.+++||| ....+++|+-||+|++|+++. |..+. ....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~- 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG- 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-
Confidence 357899999999 555666888999999999986 44443 34579999999999999999999999999999999998
Q ss_pred EEEEEccCCCCEEEEEEcCCCC--EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEE
Q 000936 85 CLFTLLGHLDYIRTVQFHHEYP--WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1219)
Q Consensus 85 ~~~~l~~h~~~I~~l~fs~d~~--~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vw 162 (1219)
.+..+..|.++|.++.|-+... .|++||.|.+|+.||.++..++.++. ....+.++..- ..+++++..++.|.+|
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVY 181 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEE
Confidence 4556677999999999988766 89999999999999999998888887 34556665543 4688999999999999
Q ss_pred ECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 000936 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 242 (1219)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~ 242 (1219)
++++...... .....-.-.+.|++..++....+.|+-+|.+.+..++.+....-.
T Consensus 182 nL~n~~te~k-------------------------~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 182 NLENPPTEFK-------------------------RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred EcCCCcchhh-------------------------hhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence 9976432210 011122345788999999888899999999999999886332245
Q ss_pred eecCCCC---------CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEe
Q 000936 243 TLRGHMN---------NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (1219)
Q Consensus 243 ~~~~h~~---------~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~ 309 (1219)
+++.|.. .|.+++|+|....|++.+.||++.+||-..+..+.+...+..+|++.+|+.+|.++|.+.
T Consensus 237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 5665652 477899999999999999999999999999999999999999999999999999988654
No 98
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=9.8e-25 Score=258.38 Aligned_cols=248 Identities=30% Similarity=0.526 Sum_probs=221.4
Q ss_pred cceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 000936 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1219)
...|.||.+.|.+++|..-+..|++|+.|.+++|||+.+|.+...+.+|.+.|+++... +.++++|+.|.+|+||++.
T Consensus 242 ~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 242 LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc
Confidence 34599999999999999878899999999999999999999999999999999998874 4478899999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000936 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (1219)
Q Consensus 82 ~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~v 161 (1219)
++.++.++.+|.++|+++..+ ++++++|+.|++|++||+.+++++.++++|.+.|.++.+.+. +.+++|+.|++|++
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~Ikv 396 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKV 396 (537)
T ss_pred CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEe
Confidence 999999999999999999998 779999999999999999999999999999999999988755 89999999999999
Q ss_pred EECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 000936 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (1219)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~ 241 (1219)
||+++.+ .+..++.+|..-+..+.+ .+++|++++.|+.|++||..+++. +
T Consensus 397 Wdl~~~~--------------------------~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~--~ 446 (537)
T KOG0274|consen 397 WDLRTKR--------------------------KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGEC--L 446 (537)
T ss_pred ecCCchh--------------------------hhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCce--e
Confidence 9999862 134467778887765555 457899999999999999999998 7
Q ss_pred EeecC-CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEE
Q 000936 242 DTLRG-HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286 (1219)
Q Consensus 242 ~~~~~-h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~ 286 (1219)
..+.+ |...|+.+.+. ...+++++.||++.+||+++++....+
T Consensus 447 ~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 447 RTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 77777 67888888876 567899999999999999999887765
No 99
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.7e-26 Score=238.03 Aligned_cols=274 Identities=20% Similarity=0.361 Sum_probs=231.9
Q ss_pred cceecccCCCEEEEEEeCCC-CEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 000936 2 LTKFETKSNRVKGLSFHSKR-PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspdg-~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1219)
+..|.||.+.|.|++=+|.. ..+++|+.||.|+|||+.+..++.+|+.|.+.|++|+++. ..++++|+|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45789999999999999987 7899999999999999999999999999999999999987 67999999999999998
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCC-CEEEEEECCCeE
Q 000936 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTV 159 (1219)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~I 159 (1219)
.. .++.++.+ ...+..+.-+..+..++|++. .|.|||.+-..++..++-....|.++.|+|.. ..|++|..|+.|
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 64 57777764 445677877777888888875 59999999888999998778889999999987 567777799999
Q ss_pred EEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 000936 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (1219)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~ 239 (1219)
.+||++....... .+ -...-+.++|+|.+-.++++++|..++.||++....
T Consensus 213 vLyD~R~~~Pl~K-------------------------Vi---~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~- 263 (433)
T KOG0268|consen 213 VLYDLRQASPLKK-------------------------VI---LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR- 263 (433)
T ss_pred EEEecccCCccce-------------------------ee---eeccccceecCccccceeeccccccceehhhhhhcc-
Confidence 9999988554321 11 123456799999888899999999999999987664
Q ss_pred eEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEec-CCCCEEEEEEeCCCCEEEEEeC
Q 000936 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR-EHDRFWILASHPEMNLLAAGHD 310 (1219)
Q Consensus 240 ~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~-~~~~i~~l~~sp~~~~la~g~d 310 (1219)
++....+|.+.|.++.|||.|+-+++||.|.+|+||..+.+..-..+.. .-..|.++.||.|.+++.+|+|
T Consensus 264 p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 264 PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCC
Confidence 4778889999999999999999999999999999999987665433321 2246899999999999999996
No 100
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.5e-24 Score=246.52 Aligned_cols=261 Identities=20% Similarity=0.353 Sum_probs=227.1
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEcc-CC
Q 000936 15 LSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG-HL 93 (1219)
Q Consensus 15 i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~-h~ 93 (1219)
+.|+ ..+.||+|. ...|++|+..++......+.+...|+++.|+++|.+|++|..+|.|.|||..+.+.+.++.+ |.
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 5677 455788875 55799999999987766666689999999999999999999999999999999999999998 99
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-EecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccc
Q 000936 94 DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV-LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTV 172 (1219)
Q Consensus 94 ~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~-~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~ 172 (1219)
..|-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++++.++++|+.|+.+.|||.....
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~---- 334 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE---- 334 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc----
Confidence 999999999 55799999999999999998776554 88999999999999999999999999999999984422
Q ss_pred cCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcC-CCCEEEEEe--CCCeEEEEECCCCCeeeEEeecCCCC
Q 000936 173 SPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGA--DDRQVKLWRMNETKAWEVDTLRGHMN 249 (1219)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~h~~ 249 (1219)
.++.+..|...|..++|+| ...+||+|+ .|+.|++||..++.. +..+ ....
T Consensus 335 -----------------------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~--i~~v-dtgs 388 (484)
T KOG0305|consen 335 -----------------------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR--IDSV-DTGS 388 (484)
T ss_pred -----------------------ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE--eccc-ccCC
Confidence 3457889999999999999 456788865 699999999998885 4333 3567
Q ss_pred CeEEEEEccCCCEEEEE--eCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEe
Q 000936 250 NVSCVMFHAKQDIIVSN--SEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (1219)
Q Consensus 250 ~I~~l~~sp~g~~L~s~--s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~ 309 (1219)
.|.++.|++..+-|+++ ..++.|.||+..+.+.+..+.+|..+|..++++|||..+++|.
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGA 450 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEec
Confidence 89999999988767664 4567899999999999999999999999999999999999886
No 101
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=4.6e-25 Score=225.50 Aligned_cols=293 Identities=19% Similarity=0.362 Sum_probs=229.4
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC-----------------C-eEEEEEccCCCCEEEEEEcCCCC
Q 000936 45 DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM-----------------H-RCLFTLLGHLDYIRTVQFHHEYP 106 (1219)
Q Consensus 45 ~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~-----------------~-~~~~~l~~h~~~I~~l~fs~d~~ 106 (1219)
..+..|.+++++.+|+|||.++++|+.|..|++.|++. + ..++++-.|.+.|.++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 34568999999999999999999999999999999851 1 35678888999999999999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEE--ecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccc
Q 000936 107 WIVSASDDQTIRIWNWQSRTCISVL--TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQM 184 (1219)
Q Consensus 107 ~l~s~s~Dg~I~iwd~~s~~~i~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~ 184 (1219)
.|++++.|++|+++|+......+.+ -....+|.++.|+|.|.++++|..-.++++||+.+.+.-...
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa----------- 254 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA----------- 254 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-----------
Confidence 9999999999999998753322221 224578999999999999999999999999999885542210
Q ss_pred cccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeec-CCC-CCeEEEEEccCCCE
Q 000936 185 NTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR-GHM-NNVSCVMFHAKQDI 262 (1219)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~-~h~-~~I~~l~~sp~g~~ 262 (1219)
..-..|.+.|+++.++++|++.++++.||.|++||--++++ +.++. .|. ..|.+..|..+|++
T Consensus 255 -------------nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC--v~t~~~AH~gsevcSa~Ftkn~ky 319 (430)
T KOG0640|consen 255 -------------NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC--VRTIGNAHGGSEVCSAVFTKNGKY 319 (430)
T ss_pred -------------CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH--HHHHHhhcCCceeeeEEEccCCeE
Confidence 02356899999999999999999999999999999888887 55543 354 46899999999999
Q ss_pred EEEEeCCCcEEEEeCCCCeeEEEEecCCC--C---EEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeC
Q 000936 263 IVSNSEDKSIRVWDVTKRTGVQTFRREHD--R---FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKD 337 (1219)
Q Consensus 263 L~s~s~dg~I~iwdl~~~~~~~~~~~~~~--~---i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d 337 (1219)
+++.+.|..+++|.+.+++.+..+.+... + -+...|+....++..-.+ ..
T Consensus 320 iLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE-------------------------as 374 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE-------------------------AS 374 (430)
T ss_pred EeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc-------------------------cc
Confidence 99999999999999999999998875421 1 111222222222222111 46
Q ss_pred CeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEe
Q 000936 338 RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVI 396 (1219)
Q Consensus 338 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~ 396 (1219)
+.+..||..++......++ +| ++.++.+.-||.+..++.++ +|-..++|--
T Consensus 375 ~slcsWdaRtadr~~l~sl---gH---n~a~R~i~HSP~~p~FmTcs--dD~raRFWyr 425 (430)
T KOG0640|consen 375 NSLCSWDARTADRVALLSL---GH---NGAVRWIVHSPVEPAFMTCS--DDFRARFWYR 425 (430)
T ss_pred Cceeeccccchhhhhhccc---CC---CCCceEEEeCCCCCceeeec--ccceeeeeee
Confidence 7788999998776555543 44 55999999999999665544 5788999864
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.9e-23 Score=204.51 Aligned_cols=285 Identities=20% Similarity=0.316 Sum_probs=225.8
Q ss_pred cCCCEEEEEEeCCCCEEEEEECCCeEEEEECCC------C---------eEEEEecccCCCEEEEEEecCCCEEEEEECC
Q 000936 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM------G---------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD 72 (1219)
Q Consensus 8 h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~------g---------~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D 72 (1219)
.+..|.+++|+|.|.+.++|+.+.+.+|..+.. + ...++-+.|.+.|.|.+|||.|.++++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 467899999999999999999999999887632 1 1123335799999999999999999999999
Q ss_pred CeEEEEEcCCCeEE-----EEEccCCCCEEEEEEcCC----CCEEEEEE-CCCeEEEEECCCCeEEEEEecCCCCeEEEE
Q 000936 73 YKIKVWNYKMHRCL-----FTLLGHLDYIRTVQFHHE----YPWIVSAS-DDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142 (1219)
Q Consensus 73 g~I~vWd~~~~~~~-----~~l~~h~~~I~~l~fs~d----~~~l~s~s-~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~ 142 (1219)
.+|++.-++...+. ..+.-|.+.|+.++|-.+ +..|++++ .|..|++-|...|+....+.+|.+.|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal- 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL- 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-
Confidence 99999876543322 346679999999999754 33666654 46788888999999999999999999876
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEee---cCCCeEEEEEcCCCCEE
Q 000936 143 FHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG---HDRGVNWAAFHPTLPLI 219 (1219)
Q Consensus 143 ~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~V~~l~~sp~g~~l 219 (1219)
++-++-.+++|+.|.+||+||++-......... .+.+ ..+.|.+++..|.|++|
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~-----------------------~~~~~glessavaav~vdpsgrll 246 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN-----------------------DFHDGGLESSAVAAVAVDPSGRLL 246 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeeccceeeeccC-----------------------cccCCCcccceeEEEEECCCccee
Confidence 444688999999999999999986443221110 0111 23568899999999999
Q ss_pred EEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----eeEEEEecCCCCEEE
Q 000936 220 VSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR----TGVQTFRREHDRFWI 295 (1219)
Q Consensus 220 ~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~----~~~~~~~~~~~~i~~ 295 (1219)
++|..|....+||++.++. +..+..|...|.|+.|+|...++++++.|..|++-|+... -++.....|.+.+..
T Consensus 247 ~sg~~dssc~lydirg~r~--iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~ 324 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIRGGRM--IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQ 324 (350)
T ss_pred eeccCCCceEEEEeeCCce--eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEE
Confidence 9999999999999999997 8899999999999999999999999999999999998642 234445568888899
Q ss_pred EEEeCCCCEEEEE-eCCCeeEEEe
Q 000936 296 LASHPEMNLLAAG-HDSGMIVFKL 318 (1219)
Q Consensus 296 l~~sp~~~~la~g-~d~gi~v~~l 318 (1219)
+.|+|+.-.+++. .+....+|.+
T Consensus 325 ~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 325 CRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred EEecCccceeeeccCcceEEEecc
Confidence 9999977655544 4444445543
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.1e-25 Score=249.06 Aligned_cols=344 Identities=20% Similarity=0.347 Sum_probs=266.6
Q ss_pred EEEEe-CCCCEEEEEECCCeEEEEECCCCe------EEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC--e
Q 000936 14 GLSFH-SKRPWILASLHSGVIQLWDYRMGT------LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH--R 84 (1219)
Q Consensus 14 ~i~fs-pdg~~Lasg~~dg~I~iWd~~~g~------~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~--~ 84 (1219)
.+..+ |.+++|.+|+.||.|++|++.... .+.+++.|...|..+....+++.|++++.|.+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 34444 356789999999999999985432 36778899999999999999999999999999999999876 5
Q ss_pred EEEEEccCCCCEEEEEE-cCCCCEEEEEECCCeEEEEECCCCeE--E--------EEEe-cCCCCeEEEEEecCCCEEEE
Q 000936 85 CLFTLLGHLDYIRTVQF-HHEYPWIVSASDDQTIRIWNWQSRTC--I--------SVLT-GHNHYVMCASFHPKEDLVVS 152 (1219)
Q Consensus 85 ~~~~l~~h~~~I~~l~f-s~d~~~l~s~s~Dg~I~iwd~~s~~~--i--------~~~~-~h~~~V~~l~~sp~~~~l~s 152 (1219)
|..++..|.++|.|+++ -++...++||+-|+.|.+||++++.. + ..+. |+...|.+++.++.|..+++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 77888999999999999 78888999999999999999997722 2 2223 78889999999999999999
Q ss_pred EECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000936 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1219)
Q Consensus 153 ~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd 232 (1219)
|+..+.+++||.++.++. ..+.||...|..+..++||..+++++.||+|++||
T Consensus 189 Ggtek~lr~wDprt~~ki---------------------------mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWd 241 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKI---------------------------MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWD 241 (735)
T ss_pred cCcccceEEeccccccce---------------------------eeeeccccceEEEEEcCCCCeEeecCCCceEEeee
Confidence 999999999999986543 25679999999999999999999999999999999
Q ss_pred CCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCC-CEEEEEeCC
Q 000936 233 MNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEM-NLLAAGHDS 311 (1219)
Q Consensus 233 ~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~-~~la~g~d~ 311 (1219)
+...++ +.++..|...|+++..+|+-..+++|+.||.|..=|+.+......+-....++..+..+... ..-++..++
T Consensus 242 LgqQrC--l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds 319 (735)
T KOG0308|consen 242 LGQQRC--LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDS 319 (735)
T ss_pred ccccce--eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccc
Confidence 999988 88899999999999999999999999999999999999854443444455566666666433 335566677
Q ss_pred CeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEE
Q 000936 312 GMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSY 391 (1219)
Q Consensus 312 gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i 391 (1219)
.+.-|...... .+++.++..+.+.+....+++.... +...++ .|. .+..-+.-.|.++++. ....|.+
T Consensus 320 ~I~rW~~~~~~-~l~~s~~~~~~~T~~~~~~~~~~~t---p~~vi~-Gg~-----ai~k~~mL~dkRhVlT--kDa~gnv 387 (735)
T KOG0308|consen 320 SIKRWKLEPDI-ALSVSGDLDFFSTDSNNHSCDLTNT---PDSVIP-GGA-----AIKKHAMLNDKRHVLT--KDAKGNV 387 (735)
T ss_pred cceecCCcccc-ccccCCCCCcccccCCCccccccCC---Cceecc-Cch-----hhhhhhhhcCcceEee--ecCCCCE
Confidence 77777765443 4455555554444554445443221 111111 111 4444455556666654 3346789
Q ss_pred EEEEecC
Q 000936 392 ELYVIPK 398 (1219)
Q Consensus 392 ~l~~~~~ 398 (1219)
.+|++-.
T Consensus 388 ~lwDIl~ 394 (735)
T KOG0308|consen 388 ALWDILA 394 (735)
T ss_pred EEEEeee
Confidence 9999754
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=2e-24 Score=230.74 Aligned_cols=275 Identities=18% Similarity=0.270 Sum_probs=238.8
Q ss_pred CCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 000936 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1219)
Q Consensus 10 ~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1219)
..++++...|..+.+++|+.|..+.++|...++.+..+++|...|+.+.|+|+...+++++.|..|+||......+....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46888888888889999999999999999999999999999999999999999999999999999999999887788888
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec--CCCCeEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 000936 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG--HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGAL 167 (1219)
Q Consensus 90 ~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~--h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~ 167 (1219)
..|..+|+.+..+|.|.||++++.||+..+.|++++.++..... ..-.+++++|||||..+.+|+.||.|++||+...
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 89999999999999999999999999999999999998887764 2345899999999999999999999999999875
Q ss_pred ccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCC
Q 000936 168 RKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH 247 (1219)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h 247 (1219)
.... .+.+|.++|..++|+.+|-+++++++|+.|++||++..+......+...
T Consensus 380 ~~~a---------------------------~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~ 432 (506)
T KOG0289|consen 380 TNVA---------------------------KFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEK 432 (506)
T ss_pred cccc---------------------------cCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccc
Confidence 4322 5678999999999999999999999999999999998876433333332
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCC--CCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCC
Q 000936 248 MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT--KRTGVQTFRREHDRFWILASHPEMNLLAAGHDSG 312 (1219)
Q Consensus 248 ~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~--~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~g 312 (1219)
..+.++.|.+.|++|+.++.|=.|++++-. +...+..+..+.+..+.+.|....+++++++.+.
T Consensus 433 -~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 433 -KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA 498 (506)
T ss_pred -ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchh
Confidence 368999999999999999877666666532 4566777777777888999999999998887543
No 105
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.1e-25 Score=219.16 Aligned_cols=276 Identities=18% Similarity=0.326 Sum_probs=220.6
Q ss_pred EEEEEeC-CCCEEEEEE-------CCCeEEEEECCCCeEEEEec--ccCCCEEEEEEecCC-CEEEEEECCCeEEEEEcC
Q 000936 13 KGLSFHS-KRPWILASL-------HSGVIQLWDYRMGTLIDRFD--EHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYK 81 (1219)
Q Consensus 13 ~~i~fsp-dg~~Lasg~-------~dg~I~iWd~~~g~~i~~l~--~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd~~ 81 (1219)
.++.||| -.++||++. .+|++.|-++..++-+..+. .-...+..++|+++. +.+++++.||++++||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 5788999 233454442 36899999986444343332 356679999999954 578899999999999964
Q ss_pred -CCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCC-CEEEEEECCCe
Q 000936 82 -MHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQT 158 (1219)
Q Consensus 82 -~~~~~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~ 158 (1219)
...++..++.|...|.++.|++..+ .++++|.|++|++|+..-++.+.++.+|+..|...+|+|.. ++++++|.|++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 3468888999999999999998654 67788999999999999999999999999999999999964 89999999999
Q ss_pred EEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC
Q 000936 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETK 237 (1219)
Q Consensus 159 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sg~~dg~I~iwd~~~~~ 237 (1219)
+++||++...+ ...+..|...+.++.|+. +.+.+++|+.|+.|+.||++.-+
T Consensus 172 l~lwdvr~~gk---------------------------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r 224 (311)
T KOG0277|consen 172 LRLWDVRSPGK---------------------------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR 224 (311)
T ss_pred EEEEEecCCCc---------------------------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc
Confidence 99999876322 224788999999999997 55689999999999999999876
Q ss_pred eeeEEeecCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCC-eeEEEEecCCCCEEEEEEeCC-CCEEEEE-eCCCe
Q 000936 238 AWEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKR-TGVQTFRREHDRFWILASHPE-MNLLAAG-HDSGM 313 (1219)
Q Consensus 238 ~~~~~~~~~h~~~I~~l~~sp~-g~~L~s~s~dg~I~iwdl~~~-~~~~~~~~~~~~i~~l~~sp~-~~~la~g-~d~gi 313 (1219)
. ++..+.+|.-.|..+.|||. ..+|++++.|-++||||...+ ..+.+...|..-+..+.||+- ..++|.. -|..+
T Consensus 225 ~-pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 225 T-PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred c-cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccce
Confidence 4 48888999999999999995 468999999999999998854 445566667777778888873 4455543 34444
Q ss_pred eEE
Q 000936 314 IVF 316 (1219)
Q Consensus 314 ~v~ 316 (1219)
.||
T Consensus 304 ~Vw 306 (311)
T KOG0277|consen 304 YVW 306 (311)
T ss_pred eee
Confidence 444
No 106
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=9.4e-25 Score=223.26 Aligned_cols=280 Identities=18% Similarity=0.367 Sum_probs=227.9
Q ss_pred eecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCC------------C------eEEEEecccCCCEEEEEEecCCCE
Q 000936 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM------------G------TLIDRFDEHDGPVRGVHFHKSQPL 65 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~------------g------~~i~~l~~h~~~V~~l~fsp~~~~ 65 (1219)
.+..|.+++.+-+|||||.++|+|+.|-+|+|.|++. | -.++++-.|...|+++.|||....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 4668999999999999999999999999999999861 1 356788899999999999999999
Q ss_pred EEEEECCCeEEEEEcCCCeE--EEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE---ecCCCCeEE
Q 000936 66 FVSGGDDYKIKVWNYKMHRC--LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL---TGHNHYVMC 140 (1219)
Q Consensus 66 Lasgs~Dg~I~vWd~~~~~~--~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~---~~h~~~V~~ 140 (1219)
|++|+.|++|+++|+..... -+.......+|+++.|+|.|.+|+.|.+-.++++||+.+-+|.... .+|.+.|++
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~ 266 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQ 266 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeE
Confidence 99999999999999864321 1122225678999999999999999999999999999998887654 478999999
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecC-CCeEEEEEcCCCCEE
Q 000936 141 ASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPLI 219 (1219)
Q Consensus 141 l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~V~~l~~sp~g~~l 219 (1219)
+.+++.+++.+++|.||.|++||--+.+.... .-..|. ..|.+..|..+|+++
T Consensus 267 V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t--------------------------~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 267 VRYSSTGSLYVTASKDGAIKLWDGVSNRCVRT--------------------------IGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred EEecCCccEEEEeccCCcEEeeccccHHHHHH--------------------------HHhhcCCceeeeEEEccCCeEE
Confidence 99999999999999999999999766554322 123454 468999999999999
Q ss_pred EEEeCCCeEEEEECCCCCeeeEEeecCC--CC---CeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeeEEEE-ecCCCC
Q 000936 220 VSGADDRQVKLWRMNETKAWEVDTLRGH--MN---NVSCVMFHAKQDIIVSNSE-DKSIRVWDVTKRTGVQTF-RREHDR 292 (1219)
Q Consensus 220 ~sg~~dg~I~iwd~~~~~~~~~~~~~~h--~~---~I~~l~~sp~g~~L~s~s~-dg~I~iwdl~~~~~~~~~-~~~~~~ 292 (1219)
++.+.|..+++|.+.+++. +....|. .+ --+...|+....+++.-.+ .+.++-||.++...+... -+|++.
T Consensus 321 LsSG~DS~vkLWEi~t~R~--l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a 398 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGRM--LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA 398 (430)
T ss_pred eecCCcceeeeeeecCCce--EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC
Confidence 9999999999999999997 4444432 11 2345567777777766543 467999999887665443 368889
Q ss_pred EEEEEEeCCCCEEEEEeCC
Q 000936 293 FWILASHPEMNLLAAGHDS 311 (1219)
Q Consensus 293 i~~l~~sp~~~~la~g~d~ 311 (1219)
+..+.-||.+..+.+++++
T Consensus 399 ~R~i~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 399 VRWIVHSPVEPAFMTCSDD 417 (430)
T ss_pred ceEEEeCCCCCceeeeccc
Confidence 9999999999988888753
No 107
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.5e-25 Score=221.36 Aligned_cols=242 Identities=24% Similarity=0.454 Sum_probs=207.6
Q ss_pred CCCEEEEEEeCC-CCEEEEEECCCeEEEEECCC-CeEEEEecccCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCCCeE
Q 000936 9 SNRVKGLSFHSK-RPWILASLHSGVIQLWDYRM-GTLIDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYKMHRC 85 (1219)
Q Consensus 9 ~~~V~~i~fspd-g~~Lasg~~dg~I~iWd~~~-g~~i~~l~~h~~~V~~l~fsp~-~~~Lasgs~Dg~I~vWd~~~~~~ 85 (1219)
.+.+..++|++. .+.+++++.||+++|||... ..++..+++|...|.++.|++. +..+++++-|++|++|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 467889999984 46778888899999999643 3678889999999999999984 45788889999999999999999
Q ss_pred EEEEccCCCCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecC-CCEEEEEECCCeEEEEE
Q 000936 86 LFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWD 163 (1219)
Q Consensus 86 ~~~l~~h~~~I~~l~fs~d~-~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~I~vwd 163 (1219)
+.++.+|...|....|||.. +.++++|.|+++++||++..-....+..|+..+.|+.|+.- .+.++||+.|+.|+.||
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD 219 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD 219 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence 99999999999999999964 58999999999999999854333448889999999999874 47899999999999999
Q ss_pred CCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeEE
Q 000936 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVD 242 (1219)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sg~~dg~I~iwd~~~~~~~~~~ 242 (1219)
++..+. ....+.+|.-.|..+.|+|.. .+|++++.|-+++|||...... .+.
T Consensus 220 ir~~r~--------------------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds-~~e 272 (311)
T KOG0277|consen 220 IRNLRT--------------------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS-AIE 272 (311)
T ss_pred hhhccc--------------------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh-hhh
Confidence 998663 244678999999999999954 5889999999999999874432 156
Q ss_pred eecCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeC
Q 000936 243 TLRGHMNNVSCVMFHA-KQDIIVSNSEDKSIRVWDV 277 (1219)
Q Consensus 243 ~~~~h~~~I~~l~~sp-~g~~L~s~s~dg~I~iwdl 277 (1219)
+...|+.-+..+.|++ ++.++++++.|+.+.||+.
T Consensus 273 ~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccceEEeccccccccCceeeecccccceeeecc
Confidence 6778999999999998 6779999999999999983
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.4e-24 Score=222.21 Aligned_cols=297 Identities=25% Similarity=0.451 Sum_probs=242.4
Q ss_pred eEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 000936 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1219)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd 121 (1219)
++++.+.+|...|..++-....+.+.+++.|.+.++|.+++++|+.++.||.+.|.++.|++.+.++++++.|++..||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ------CCC----------------------------------CeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000936 122 ------WQS----------------------------------RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (1219)
Q Consensus 122 ------~~s----------------------------------~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~v 161 (1219)
+.+ +.++..+++|...|.+..|...|+.+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 111 1345667899999999999999999999999999999
Q ss_pred EECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 000936 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (1219)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~ 241 (1219)
||+.++.. ...+.||+...+.++-+|+.+++++.+.|-+.++||++..- ..+
T Consensus 299 wDVEtge~---------------------------v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI-~sV 350 (481)
T KOG0300|consen 299 WDVETGEV---------------------------VNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI-QSV 350 (481)
T ss_pred eeeccCce---------------------------eccccCcchhccccccCCcceEEEEeccCceeEeccchhhc-cee
Confidence 99998654 44788999999999999999999999999999999999543 358
Q ss_pred EeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe-eEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecC
Q 000936 242 DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT-GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLER 320 (1219)
Q Consensus 242 ~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~-~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~ 320 (1219)
..+.||...|+++.|..+ ..+++|+.|.+|++||+++.. ++.+++ ...++..++.+..+.+++.-+|
T Consensus 351 ~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhD---------- 418 (481)
T KOG0300|consen 351 AVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHD---------- 418 (481)
T ss_pred eeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccC----------
Confidence 889999999999999865 468999999999999998754 455554 4566778888887777777775
Q ss_pred CcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEE-EEEEeCCCCEEEEEEecC
Q 000936 321 ERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAV-LICSDVDGGSYELYVIPK 398 (1219)
Q Consensus 321 ~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l-lv~~~~~dg~i~l~~~~~ 398 (1219)
++.|++||++..+...+-.....+| ..-|++.+|..+...- ++.++ -|..+.-|.+..
T Consensus 419 ----------------NRqvRlfDlnG~RlaRlPrtsRqgH---rRMV~c~AW~eehp~cnLftcG-FDR~v~gW~in~ 477 (481)
T KOG0300|consen 419 ----------------NRQVRLFDLNGNRLARLPRTSRQGH---RRMVTCCAWLEEHPACNLFTCG-FDRMVAGWKINT 477 (481)
T ss_pred ----------------CceEEEEecCCCccccCCccccccc---ceeeeeeeccccCccccccccc-ccceeeeeEecc
Confidence 6789999998765543333334455 3388899997554311 22222 345677777653
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1.9e-24 Score=230.86 Aligned_cols=251 Identities=19% Similarity=0.322 Sum_probs=222.8
Q ss_pred CcceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 000936 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 1 ml~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1219)
|+..|+||+..|+.+.|||+...+++++.|-.|+||.............|+++|+.+..+|+|.||++++.|++..+.|+
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI 332 (506)
T ss_pred hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEc
Confidence 57789999999999999999999999999999999999888888888899999999999999999999999999999999
Q ss_pred CCCeEEEEEccC--CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCe
Q 000936 81 KMHRCLFTLLGH--LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQT 158 (1219)
Q Consensus 81 ~~~~~~~~l~~h--~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~ 158 (1219)
+++.++...... .-.+++.+|||||..|.+|+.||.|+|||+.++..+..|.+|.++|..++|+.+|-++++++.|+.
T Consensus 333 ~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~ 412 (506)
T KOG0289|consen 333 SSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS 412 (506)
T ss_pred cCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe
Confidence 999988776532 235899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 000936 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1219)
Q Consensus 159 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~ 238 (1219)
|++||++..+.... +.+. ...++.++.|.+.|.+++.++.|=+|++++-.+...
T Consensus 413 V~lwDLRKl~n~kt-------------------------~~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 413 VKLWDLRKLKNFKT-------------------------IQLD-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred EEEEEehhhcccce-------------------------eecc-ccccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence 99999998653321 1222 234799999999999999998888888887666655
Q ss_pred eeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 000936 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (1219)
Q Consensus 239 ~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl 277 (1219)
.++..+..|.+..+++.|....++++++|.|..++++.+
T Consensus 467 ~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 557788889999999999999999999999999888754
No 110
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.2e-24 Score=236.78 Aligned_cols=240 Identities=23% Similarity=0.371 Sum_probs=208.8
Q ss_pred ecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCC-CEEEEEECCCeEEEEEcCCC
Q 000936 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYKMH 83 (1219)
Q Consensus 5 l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd~~~~ 83 (1219)
|.--.+.|.+++|-.||++||+|...|.|+|+|+.+...+..+.+|..||..+.|+|++ ..|++|++|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 44445789999999999999999999999999987777888899999999999999955 57888999999999999998
Q ss_pred eEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000936 84 RCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (1219)
Q Consensus 84 ~~~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~-~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~v 161 (1219)
.....+.+|+++|+|.+|+|-.. .++|||.||+|++||.++. ..+..+. |..+|.++.+-|.|..+++++ ...|+|
T Consensus 144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkV 221 (487)
T KOG0310|consen 144 YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKV 221 (487)
T ss_pred EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEE
Confidence 88778999999999999999766 8899999999999999876 5566665 999999999999999999987 568999
Q ss_pred EECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 000936 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (1219)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~ 241 (1219)
||+.++.+.. .....|...|+|+++..++..|++|+-||.|++||+.+-+. +
T Consensus 222 WDl~~G~qll--------------------------~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv--v 273 (487)
T KOG0310|consen 222 WDLTTGGQLL--------------------------TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV--V 273 (487)
T ss_pred EEecCCceeh--------------------------hhhhcccceEEEEEeecCCceEeecccccceEEEEccceEE--E
Confidence 9998654322 13445999999999999999999999999999999777764 4
Q ss_pred EeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000936 242 DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVW 275 (1219)
Q Consensus 242 ~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iw 275 (1219)
..+ ...++|.+++.+|+++.++.|..||.+.+-
T Consensus 274 ~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 274 HSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred Eee-ecccceeeEEecCCCceEEEecccceeeee
Confidence 444 357899999999999999999999977665
No 111
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.5e-23 Score=249.01 Aligned_cols=233 Identities=11% Similarity=0.190 Sum_probs=186.9
Q ss_pred cceecccCCCEEEEEEeCC-CCEEEEEECCCeEEEEECCCCe--------EEEEecccCCCEEEEEEecCCCE-EEEEEC
Q 000936 2 LTKFETKSNRVKGLSFHSK-RPWILASLHSGVIQLWDYRMGT--------LIDRFDEHDGPVRGVHFHKSQPL-FVSGGD 71 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspd-g~~Lasg~~dg~I~iWd~~~g~--------~i~~l~~h~~~V~~l~fsp~~~~-Lasgs~ 71 (1219)
+..|.+|.+.|.+++|+|+ +.+|++|+.||+|+|||+.++. .+..+.+|...|.+++|+|++.. |++++.
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~ 146 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF 146 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence 3568899999999999996 7899999999999999997642 34567899999999999999875 578999
Q ss_pred CCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEE-----EEecC
Q 000936 72 DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA-----SFHPK 146 (1219)
Q Consensus 72 Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l-----~~sp~ 146 (1219)
|++|+|||+.+++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+|.+.+.+. .|+++
T Consensus 147 DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 147 DSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred CCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 9999999999998888776 66889999999999999999999999999999999999999998765433 34578
Q ss_pred CCEEEEEECCC----eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEE
Q 000936 147 EDLVVSASLDQ----TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG 222 (1219)
Q Consensus 147 ~~~l~s~s~dg----~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg 222 (1219)
++++++++.|+ +|++||++...... ....+..+.+.+......++|.++++|
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl------------------------~~~~ld~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSAL------------------------VTMSIDNASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCce------------------------EEEEecCCccceEEeeeCCCCCEEEEE
Confidence 88999988774 79999998632210 111233334444444455678899999
Q ss_pred eCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCC
Q 000936 223 ADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ 260 (1219)
Q Consensus 223 ~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g 260 (1219)
+.|+.|++|++..+....+.... +..++.+++|.|+.
T Consensus 282 kGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 282 KGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred ECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 99999999999877643333333 56778899999965
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=7.2e-24 Score=240.86 Aligned_cols=727 Identities=13% Similarity=0.137 Sum_probs=394.5
Q ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE-
Q 000936 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL- 89 (1219)
Q Consensus 11 ~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l- 89 (1219)
.+++++|||..-.|+.|..-|.+.+|...+.+.......|..+|..+.||++|..++|+..-|.+.+|.+.....+...
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~ 140 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSN 140 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccch
Confidence 4678999999999999999999999998777777777789999999999999999999999999999987632222111
Q ss_pred -ccCC--CCEEEEEE-------------------------------------------cCCCCEEEEEECCCeEEEEECC
Q 000936 90 -LGHL--DYIRTVQF-------------------------------------------HHEYPWIVSASDDQTIRIWNWQ 123 (1219)
Q Consensus 90 -~~h~--~~I~~l~f-------------------------------------------s~d~~~l~s~s~Dg~I~iwd~~ 123 (1219)
..|. ..++-++| .|+|..++.++.+|+|+-.| +
T Consensus 141 ~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvd-q 219 (1416)
T KOG3617|consen 141 IMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVD-Q 219 (1416)
T ss_pred hhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEc-C
Confidence 1111 11221111 23444555556666665555 3
Q ss_pred CCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCC-CccccccCCccceeec-cccccccccccce----EE
Q 000936 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA-LRKKTVSPADDILRLS-QMNTDLFGGVDAV----VK 197 (1219)
Q Consensus 124 s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~ 197 (1219)
.|++....+..+. ..+-|.+...-+++.-.+-++.++-... +.....-......... ..+....+...++ .+
T Consensus 220 ~g~~~~V~k~dS~--vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eK 297 (1416)
T KOG3617|consen 220 NGRQRTVHKLDSE--VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEK 297 (1416)
T ss_pred CCcEEEEEEccch--HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcc
Confidence 4444444332111 1233444333333333333333332211 1000000000000000 0000000000111 11
Q ss_pred EEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------CeeeEEeecCCCCCeEEEEEccCCCEEEEEeCC
Q 000936 198 YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET--------KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED 269 (1219)
Q Consensus 198 ~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~--------~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~d 269 (1219)
+-+ .....++|++++..+..+..|...|.+.+|.-... ..|.+...+...+.|+.+.|.|-...++..+..
T Consensus 298 yg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~ 376 (1416)
T KOG3617|consen 298 YGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEE 376 (1416)
T ss_pred hhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhh
Confidence 111 23467999999999999999999999999964322 334555556667889999999977766666554
Q ss_pred CcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCc
Q 000936 270 KSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQK 349 (1219)
Q Consensus 270 g~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~ 349 (1219)
..+ +.. ..... ..|....+.+.-+.+.-.+..+..+.....+++-....+......+++...++|..|++.+..
T Consensus 377 ~v~-ll~--E~~l~---~~h~~~~~A~q~ss~S~~L~hc~sGv~~~l~~~~~~~gi~l~e~~lvvwNgr~v~~y~lq~SG 450 (1416)
T KOG3617|consen 377 DVV-LLG--ENSLT---VKHRGKMAAIQTSSNSFTLLHCTSGVSQDLKLSIPSAGICLGEKQLVVWNGRTVVTYDLQTSG 450 (1416)
T ss_pred hee-eec--cCchH---HHHhhhhHHhhhcCCceEEEeeccchhhhhhhccchhhheeccceEEEEcCceEEEEEecccc
Confidence 322 221 11110 112222222222222221222211111122222222234444555666678888899987532
Q ss_pred ceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEE
Q 000936 350 DTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVL 429 (1219)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~ 429 (1219)
...+........ ...+++.... .+. +-++ ..|.++.+.+.....+ .+....+.+.-+..+ |.+++.
T Consensus 451 ~la~~~~~tF~c-----et~~la~~nq--N~y-cies--~~Vfvrt~qGtv~q~i--~~seiEg~~~~ldi~--g~~l~v 516 (1416)
T KOG3617|consen 451 SLATIQCTTFSC-----ETTSLAIVNQ--NLY-CIES--DKVFVRTLQGTVRQEI--SLSEIEGVVVLLDIM--GELLIV 516 (1416)
T ss_pred hhHHHhhhhhcc-----ccchHhHhhc--ceE-Eecc--CcEEEEecchhhhhhc--cchhccCceehhhhc--cceeEE
Confidence 222221111111 2233333322 222 2232 3566666654322111 233334444333333 667777
Q ss_pred EcCCCEEEEEecCCceeEeee----------CCcceEEEEEeCCCcEEE---E-e----CCeEEEEEcCCCeEEE--EEe
Q 000936 430 DKSSNQVLVKNLKNEVVKKSI----------LPIAADAIFYAGTGNLLC---R-A----EDRVVIFDLQQRLVLG--DLQ 489 (1219)
Q Consensus 430 ~~~dg~I~Iwdl~~~~~~~i~----------~~~~v~~l~~s~dg~~L~---s-~----d~~I~l~dl~~~~~l~--~~~ 489 (1219)
.+..+.++-+|+.....+.+. ....+..+..+..|.-+. + . -.++.+||..+++... .+.
T Consensus 517 ~t~~~~~k~~dvsr~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~~lE 596 (1416)
T KOG3617|consen 517 QTVSTVAKRLDVSRAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMNHLE 596 (1416)
T ss_pred eehHHHHHHhhhhhhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhhccC
Confidence 776666666666532222211 111455555555544442 1 2 2789999998875321 110
Q ss_pred ----------cCCeeEEEEcCCC-CEEEEEeCCeEEEEecCccceeeeeeeeEEeeeEEecCCeEEEEcCCeeeEEecCC
Q 000936 490 ----------TPFVKYVVWSNDM-ESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNG 558 (1219)
Q Consensus 490 ----------~~~v~~v~ws~dg-~~la~~s~~~i~i~~~~l~~~~~~~e~~~iks~~wd~~~~~iy~t~~~iky~l~~g 558 (1219)
.+....+.|+.+. +++++-..+ +.-..+.+..+...+ . +....+++.+- ++..
T Consensus 597 ~ETNakkEs~ts~pvr~fWD~~epRllv~E~~~---~~p~s~pQ~ns~QPs-----~-~~qskVvvLt~-------F~se 660 (1416)
T KOG3617|consen 597 PETNAKKESSTSPPVRFFWDENEPRLLVVECIH---VEPESTPQRNSLQPS-----H-FVQSKVVVLTA-------FVSE 660 (1416)
T ss_pred ccccccccccCCCCceeeecCCCCcEEEEEeee---cccccCcccccCCCc-----c-ccccceEEEee-------eccc
Confidence 0234457787754 444432221 111111111111110 0 00122222211 1223
Q ss_pred ceeEEEecccc-----EEEEEEeCCEEEEEecCCceEE--------------------EEe-------CchhHhHHHHHh
Q 000936 559 DSGIIRTLDVP-----IYITKVSGNTIFCLDRDGKNRA--------------------IVI-------DATEYIFKLSLL 606 (1219)
Q Consensus 559 ~~~~i~~~~~~-----~~l~~~~~~~l~~l~~~~~~~~--------------------~~l-------d~~e~~f~~~l~ 606 (1219)
+.|++.....+ -.++++.-+..|++.+.+--+. +.+ ....+.|.+.+.
T Consensus 661 ehG~ll~~~~q~~~~~~~Ll~~~VPn~yfvRk~~~d~ed~~ee~~i~~~~~~~pLrdFvgle~Cd~~TRkaml~FSfyvt 740 (1416)
T KOG3617|consen 661 EHGILLQGMQQKNLHCGKLLSVSVPNFYFVRKSGWDEEDNREERTIGKTLVAKPLRDFVGLENCDESTRKAMLDFSFYVT 740 (1416)
T ss_pred ccceeeeecccCCCCccceeeeecCceEEEecccccccccccccccchhhhhhhHHHhcCccccCHHHHHhhhceeEEEE
Confidence 33332222111 1233333333333321111000 000 134556888888
Q ss_pred ccCHHHHHHhhhcCcccchhHHH-----------------------------------------------HHHhCCChhh
Q 000936 607 RKRYDHVMSMIRNSQLCGQAMIA-----------------------------------------------YLQQKGFPEV 639 (1219)
Q Consensus 607 ~~~~~~a~~~i~~~~~~~~~i~~-----------------------------------------------~l~~~g~~e~ 639 (1219)
.|++|.|++.|+..+ +.++|. ...+.|+.|.
T Consensus 741 iG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEe 818 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEE 818 (1416)
T ss_pred eccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHH
Confidence 999999988887643 244444 2233455566
Q ss_pred hhccccCcchhhhHHhh----cCCHHHHHHHHHH----------------------------------------------
Q 000936 640 ALHFVKDERTRFNLALE----SGNIQIAVASAKE---------------------------------------------- 669 (1219)
Q Consensus 640 Al~~~~d~~~rf~lal~----~g~~~~A~~~a~~---------------------------------------------- 669 (1219)
|+.+++... ||+|.-+ .|.|++|+++|..
T Consensus 819 A~~lYr~ck-R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e 897 (1416)
T KOG3617|consen 819 ALILYRQCK-RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE 897 (1416)
T ss_pred HHHHHHHHH-HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh
Confidence 666554332 4554432 4666666666532
Q ss_pred -----------hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHHHHHHcCChhHHHHH-
Q 000936 670 -----------IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHN- 737 (1219)
Q Consensus 670 -----------l~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~~~~~~~~~~~~~~- 737 (1219)
..++.+|.++|++.+.+|+.+.|...|..++||-.+.++.|+.|+.+|+..++ +..+|..+.+|.
T Consensus 898 ~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA---~esgd~AAcYhla 974 (1416)
T KOG3617|consen 898 YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIA---EESGDKAACYHLA 974 (1416)
T ss_pred ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHH---HhcccHHHHHHHH
Confidence 44578999999999999999999999999999999999999999999886654 477777777766
Q ss_pred --HHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcCCC
Q 000936 738 --ALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDN 783 (1219)
Q Consensus 738 --al~lgd~~eai~i~~~~g~~~~A~~la~~~g~~~~a~~l~~~~~~~ 783 (1219)
|.-.|++.+|+++|.++.-+.-|++++|.+++.|+...++-..++.
T Consensus 975 R~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen 975 RMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGS 1022 (1416)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCch
Confidence 4556999999999999999999999999999999998888655543
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=5.9e-24 Score=229.49 Aligned_cols=281 Identities=23% Similarity=0.359 Sum_probs=236.8
Q ss_pred EEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE----E-------------E-ccCCCCEEEEEEcCCC
Q 000936 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF----T-------------L-LGHLDYIRTVQFHHEY 105 (1219)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~----~-------------l-~~h~~~I~~l~fs~d~ 105 (1219)
...+..|.-+|.+++++|+..+.++++.+++|.-|++.+++... + - .+|...+.+++.|+|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 45667899999999999999999999999999999998876431 0 0 2688899999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeecccc
Q 000936 106 PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185 (1219)
Q Consensus 106 ~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 185 (1219)
+||++|+.|..|.||+.++.+.+..+++|.+.|.+++|-...+.+++++.|++|++|++......
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v--------------- 279 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV--------------- 279 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH---------------
Confidence 99999999999999999999999999999999999999988889999999999999999764432
Q ss_pred ccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEE
Q 000936 186 TDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVS 265 (1219)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s 265 (1219)
-++.+|...|..+.-...++.+.+|+.|+++++|++.... ...+++|.+.+.|++|- +...+++
T Consensus 280 ------------etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---qlifrg~~~sidcv~~I-n~~Hfvs 343 (479)
T KOG0299|consen 280 ------------ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES---QLIFRGGEGSIDCVAFI-NDEHFVS 343 (479)
T ss_pred ------------HHHhCCccceeeechhcccceEEeccccceeEEEeccccc---eeeeeCCCCCeeeEEEe-cccceee
Confidence 2578899999999998888888888899999999996655 45778899999999997 5678999
Q ss_pred EeCCCcEEEEeCCCCeeEEEEecCC------------CCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEE
Q 000936 266 NSEDKSIRVWDVTKRTGVQTFRREH------------DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLF 333 (1219)
Q Consensus 266 ~s~dg~I~iwdl~~~~~~~~~~~~~------------~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~ 333 (1219)
||.+|.|.+|++.+.+++.+.+..+ ..|++++..|...++++|+
T Consensus 344 GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS------------------------ 399 (479)
T KOG0299|consen 344 GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS------------------------ 399 (479)
T ss_pred ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC------------------------
Confidence 9999999999999999988765321 1578888999999999888
Q ss_pred EEeCCeEEEEEecCC--cceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCC
Q 000936 334 YAKDRFLRYYEFSTQ--KDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVD 387 (1219)
Q Consensus 334 ~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~ 387 (1219)
.+|.|++|-+..+ ...++.+++ +.+.|++++|+++|+.+++..+-+
T Consensus 400 --~~G~vrLW~i~~g~r~i~~l~~ls------~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 400 --WSGCVRLWKIEDGLRAINLLYSLS------LVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred --CCCceEEEEecCCccccceeeecc------cccEEEEEEEccCCCEEEEecccc
Confidence 4678888888876 222333333 244899999999999888876633
No 114
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=4.3e-24 Score=253.65 Aligned_cols=305 Identities=21% Similarity=0.351 Sum_probs=239.4
Q ss_pred cCCCEEEEEEecCCCEEEEEE--CCCeEEEEEcCC------------CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCC
Q 000936 50 HDGPVRGVHFHKSQPLFVSGG--DDYKIKVWNYKM------------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ 115 (1219)
Q Consensus 50 h~~~V~~l~fsp~~~~Lasgs--~Dg~I~vWd~~~------------~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg 115 (1219)
++..|.+++.||++..++||| .|+.+.||+.+. .+.+.+...|.+.|.|+.|+|||++||+||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 445689999999999999999 899999998641 345667788999999999999999999999999
Q ss_pred eEEEEECCC------------------CeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcc
Q 000936 116 TIRIWNWQS------------------RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177 (1219)
Q Consensus 116 ~I~iwd~~s------------------~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~ 177 (1219)
.|.||.... .+++..+.+|...|..++|+|++.++++++.|++|.+|+..+.+.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~-------- 163 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL-------- 163 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee--------
Confidence 999998662 146778899999999999999999999999999999999988632
Q ss_pred ceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCC------CCe
Q 000936 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM------NNV 251 (1219)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~------~~I 251 (1219)
..++.+|.+.|..+.|.|-|++|++-++|++|++|+..+... .+.+.++. ..+
T Consensus 164 -------------------~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i--~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 164 -------------------LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI--EKSITKPFEESPLTTFF 222 (942)
T ss_pred -------------------eeeeecccccccceEECCccCeeeeecCCceEEEEEccccee--eEeeccchhhCCCccee
Confidence 347899999999999999999999999999999999777544 34443332 347
Q ss_pred EEEEEccCCCEEEEEe----CCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCC---CEEEEEeCCCeeEEEecCCcce
Q 000936 252 SCVMFHAKQDIIVSNS----EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEM---NLLAAGHDSGMIVFKLERERPA 324 (1219)
Q Consensus 252 ~~l~~sp~g~~L~s~s----~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~---~~la~g~d~gi~v~~l~~~~~~ 324 (1219)
..+.|||||.+|++.. .-.++.|.+-.+.+.-..+-+|..++.++.|+|.- +.- +|. ..++.
T Consensus 223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~-----ng~------~~~~~ 291 (942)
T KOG0973|consen 223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK-----NGT------STQPN 291 (942)
T ss_pred eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc-----cCC------ccCCC
Confidence 8899999999999863 33468899888888888899999999999999831 100 000 00000
Q ss_pred EEecCCEEEEE-eCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCC
Q 000936 325 FAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGR 403 (1219)
Q Consensus 325 ~s~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~ 403 (1219)
..=..++++ .|++|.+|.....+ +++.+.... ...|..++|+|||-.+++++- ||+|.++.+.....|.
T Consensus 292 --~~y~i~AvgSqDrSlSVW~T~~~R--Pl~vi~~lf----~~SI~DmsWspdG~~LfacS~--DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 292 --CYYCIAAVGSQDRSLSVWNTALPR--PLFVIHNLF----NKSIVDMSWSPDGFSLFACSL--DGTVALIHFEEKELGV 361 (942)
T ss_pred --cceEEEEEecCCccEEEEecCCCC--chhhhhhhh----cCceeeeeEcCCCCeEEEEec--CCeEEEEEcchHHhCc
Confidence 000123333 89999999985544 455444432 238999999999999888775 7899999987665544
Q ss_pred C
Q 000936 404 G 404 (1219)
Q Consensus 404 ~ 404 (1219)
.
T Consensus 362 ~ 362 (942)
T KOG0973|consen 362 A 362 (942)
T ss_pred c
Confidence 3
No 115
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=3.9e-25 Score=235.15 Aligned_cols=286 Identities=25% Similarity=0.412 Sum_probs=239.5
Q ss_pred EEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe--EEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 000936 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR--CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120 (1219)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~--~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iw 120 (1219)
....+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++.|..+.|+.+.|.+++..+++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 345567899999999999998999999999999999987666 677888889999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEE
Q 000936 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1219)
Q Consensus 121 d~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1219)
++.+.+...++++|...|+++.|......+++|+.|.+|+.||+........ .+
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt--------------------------~l 300 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT--------------------------VL 300 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecc--------------------------cc
Confidence 9999999999999999999999987776799999999999999987443221 11
Q ss_pred eecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000936 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1219)
Q Consensus 201 ~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~ 280 (1219)
....++.++.+ ...+++|..|+.|++||.++... ......+. .|+++..+++|..|.+++.|.++.+.|+++.
T Consensus 301 --~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~--~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 301 --PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK--TRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK 373 (459)
T ss_pred --ccccccceEec--ceeeeecccccceEEEeccCCce--eeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc
Confidence 12233444444 45789999999999999999887 56666554 8999999999999999999999999999999
Q ss_pred eeEEEEecCC----CCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEee
Q 000936 281 TGVQTFRREH----DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPI 356 (1219)
Q Consensus 281 ~~~~~~~~~~----~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 356 (1219)
...+.+.... ...+.+.|||++.++++|+ .|+.|++|++.+++.......
T Consensus 374 eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS--------------------------~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 374 EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS--------------------------ADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred cEEEEeeccccccccccceeEECCCCceeeecc--------------------------CCCcEEEEEccCceEEEEecc
Confidence 8888876543 3367899999999999998 478899999999988666555
Q ss_pred cCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEE
Q 000936 357 RRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELY 394 (1219)
Q Consensus 357 ~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~ 394 (1219)
.... ..|++++|+|.|..++.++. ++.+.+|
T Consensus 428 s~s~-----~aI~s~~W~~sG~~Llsadk--~~~v~lW 458 (459)
T KOG0288|consen 428 STSN-----AAITSLSWNPSGSGLLSADK--QKAVTLW 458 (459)
T ss_pred CCCC-----cceEEEEEcCCCchhhcccC--CcceEec
Confidence 4322 27999999999998877654 6677777
No 116
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-23 Score=237.90 Aligned_cols=281 Identities=19% Similarity=0.263 Sum_probs=237.9
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCc
Q 000936 97 RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176 (1219)
Q Consensus 97 ~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~ 176 (1219)
.-+.|+..+ .+++|. ...|++|+-.++........+...|+++.|+++|.+|++|..+|.|.+||....+...
T Consensus 181 nlldWss~n-~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~----- 253 (484)
T KOG0305|consen 181 NLLDWSSAN-VLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR----- 253 (484)
T ss_pred hHhhcccCC-eEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc-----
Confidence 446777443 555554 5689999999988766666668999999999999999999999999999998755432
Q ss_pred cceeeccccccccccccceEEEEEee-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEE
Q 000936 177 DILRLSQMNTDLFGGVDAVVKYVLEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255 (1219)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~ 255 (1219)
.+.+ |...|.+++|. +..+.+|+.||.|..+|++..+.. +..+.+|...|..+.
T Consensus 254 ----------------------~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~-~~~~~~H~qeVCgLk 308 (484)
T KOG0305|consen 254 ----------------------TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV-VSTLQGHRQEVCGLK 308 (484)
T ss_pred ----------------------cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh-hhhhhcccceeeeeE
Confidence 3344 89999999998 568999999999999999987763 225889999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeC-CCCEEEEEeCCCeeEEEecCCcceEEecCCEEEE
Q 000936 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP-EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFY 334 (1219)
Q Consensus 256 ~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp-~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~ 334 (1219)
|++|+.++++|+.|+.+.|||.....+...+..|...|..++|+| ...+||+|...
T Consensus 309 ws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs----------------------- 365 (484)
T KOG0305|consen 309 WSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGS----------------------- 365 (484)
T ss_pred ECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCC-----------------------
Confidence 999999999999999999999988899999999999999999999 56788887643
Q ss_pred EeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCc
Q 000936 335 AKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGL 414 (1219)
Q Consensus 335 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~ 414 (1219)
.|+.|++||..++..+..... ...|.+|.|++..+-++++.+...+.+.||.++.. .....+.+|...
T Consensus 366 -~D~~i~fwn~~~g~~i~~vdt--------gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~R 433 (484)
T KOG0305|consen 366 -ADRCIKFWNTNTGARIDSVDT--------GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSR 433 (484)
T ss_pred -cccEEEEEEcCCCcEeccccc--------CCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcce
Confidence 489999999999877443221 22999999999999999998888889999999863 223367899999
Q ss_pred eeEEEEEeCCeEEEEEcCCCEEEEEecCCc
Q 000936 415 GGSAIFIARNRFAVLDKSSNQVLVKNLKNE 444 (1219)
Q Consensus 415 i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~ 444 (1219)
|..++++|||..+++++.|.++++|++-+.
T Consensus 434 Vl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 434 VLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999999999998743
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.7e-23 Score=213.35 Aligned_cols=271 Identities=18% Similarity=0.305 Sum_probs=225.0
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE
Q 000936 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~ 88 (1219)
.+.|+.|.|+|.+..|++++-||++++||+....+...+ .|..++.+++|.++ ..+++|+-||.|+.+|+.++... .
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-Q 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-e
Confidence 578999999999999999999999999999888666666 59999999999875 46899999999999999987654 4
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 000936 89 LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR 168 (1219)
Q Consensus 89 l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~ 168 (1219)
+..|...|+|+.+++....+++||.|++|++||.........+.. ...|.++... ++.|++|+.+..|.+||+++..
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEccccc
Confidence 556999999999999888999999999999999987656655553 3478887765 7889999999999999999865
Q ss_pred cccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eeEEeecC
Q 000936 169 KKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--WEVDTLRG 246 (1219)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~--~~~~~~~~ 246 (1219)
..... .-..-.-.+.++++.|++.-+++++-||.|.+=.++.... .....++.
T Consensus 167 ~~~q~-------------------------reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC 221 (323)
T KOG1036|consen 167 EPFQR-------------------------RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC 221 (323)
T ss_pred chhhh-------------------------ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe
Confidence 43211 1122344678999999888899999999999876665511 01344555
Q ss_pred CC---------CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeC
Q 000936 247 HM---------NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1219)
Q Consensus 247 h~---------~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d 310 (1219)
|. .+|.+++|||-...|++|+.||.|.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 53 36899999999999999999999999999999999999888888999999999999999874
No 118
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=1.6e-23 Score=227.81 Aligned_cols=305 Identities=19% Similarity=0.317 Sum_probs=226.1
Q ss_pred EEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC----eEEEEEc-cCCCCEEEEEEcCCCCEEEEEECCCeE
Q 000936 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH----RCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTI 117 (1219)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~----~~~~~l~-~h~~~I~~l~fs~d~~~l~s~s~Dg~I 117 (1219)
....+++|...|+++++.|.|.+|++|+-|..|++||+... +....+. .....|.++.|++.+..|++.+.....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 33456789999999999999999999999999999998643 2222222 244589999999999999999989999
Q ss_pred EEEECCCCeEEEE------------EecCCCCeEEEEEecCC-CEEEEEECCCeEEEEECCCCccccccCCccceeeccc
Q 000936 118 RIWNWQSRTCISV------------LTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQM 184 (1219)
Q Consensus 118 ~iwd~~s~~~i~~------------~~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~ 184 (1219)
+++|-...+.... .+||...++|.+|+|.. ..+++++.||++|+||+...+....
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q------------ 306 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ------------ 306 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee------------
Confidence 9999554333222 25799999999999976 6899999999999999987553210
Q ss_pred cccccccccceEEE-EEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee-EEeecCCCC--CeEEEEEccCC
Q 000936 185 NTDLFGGVDAVVKY-VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE-VDTLRGHMN--NVSCVMFHAKQ 260 (1219)
Q Consensus 185 ~~~~~~~~~~~~~~-~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~h~~--~I~~l~~sp~g 260 (1219)
+++. ...+..-+++.++|+++|++|++|+.||.|.+|+......-+ ...-..|.. .|+|+.||++|
T Consensus 307 ----------Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 307 ----------VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred ----------EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 0111 122445678999999999999999999999999975543222 333356766 89999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCe-eEEEEecCCC--CEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeC
Q 000936 261 DIIVSNSEDKSIRVWDVTKRT-GVQTFRREHD--RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKD 337 (1219)
Q Consensus 261 ~~L~s~s~dg~I~iwdl~~~~-~~~~~~~~~~--~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d 337 (1219)
++|++-+.|+++++||++..+ ++....+-.. .-+.++|||+.+++++|+.-. +.. ..
T Consensus 377 ~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~-------~~~-------------~~ 436 (641)
T KOG0772|consen 377 NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAP-------NGM-------------TA 436 (641)
T ss_pred chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccccc-------CCC-------------CC
Confidence 999999999999999998653 4444433322 346789999999999986311 000 35
Q ss_pred CeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecC
Q 000936 338 RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1219)
Q Consensus 338 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~ 398 (1219)
+.+.+||..+-..+..+.+. . . .|..+.|+|.=+.+++.++ ||.+++|--+.
T Consensus 437 g~L~f~d~~t~d~v~ki~i~--~--a---Svv~~~WhpkLNQi~~gsg--dG~~~vyYdp~ 488 (641)
T KOG0772|consen 437 GTLFFFDRMTLDTVYKIDIS--T--A---SVVRCLWHPKLNQIFAGSG--DGTAHVYYDPN 488 (641)
T ss_pred ceEEEEeccceeeEEEecCC--C--c---eEEEEeecchhhheeeecC--CCceEEEECcc
Confidence 56778887775554444333 2 2 7788999998888877666 57777765443
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1e-22 Score=209.97 Aligned_cols=251 Identities=22% Similarity=0.347 Sum_probs=205.6
Q ss_pred EEEEECCCeEEEEECCCC------------eEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEcc
Q 000936 24 ILASLHSGVIQLWDYRMG------------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91 (1219)
Q Consensus 24 Lasg~~dg~I~iWd~~~g------------~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~ 91 (1219)
+++|+....|.=+++.-. ..+..+..|.++|++++. +++++|+||.|-+|+|||+.+...+..+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 566777666665554311 224566789999999998 688999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCC--EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCcc
Q 000936 92 HLDYIRTVQFHHEYP--WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169 (1219)
Q Consensus 92 h~~~I~~l~fs~d~~--~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~ 169 (1219)
|.+.|+++.|.+... +|++|++||.|.+|+..+..++..+++|.+.|+.++.||.+++.++.+.|+.++.||+-.++.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999999999876 999999999999999999999999999999999999999999999999999999999987665
Q ss_pred ccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCC
Q 000936 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249 (1219)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~ 249 (1219)
....+ -...-+.+.|+|.|.+++.+..+ .|-+|.+.+.+. ...+ ....
T Consensus 162 a~v~~----------------------------L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v--~~~i-~~~~ 209 (362)
T KOG0294|consen 162 AFVLN----------------------------LKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASV--FREI-ENPK 209 (362)
T ss_pred ceeec----------------------------cCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhH--hhhh-hccc
Confidence 32211 11122338999999999888865 488999888774 2222 2224
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEE--eCCCCEEEEEe
Q 000936 250 NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILAS--HPEMNLLAAGH 309 (1219)
Q Consensus 250 ~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~--sp~~~~la~g~ 309 (1219)
.+.++.|- ++..|++|+.|+.|.+||..+..+...+..|..+|..+.+ .|++.+|++.+
T Consensus 210 r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaS 270 (362)
T KOG0294|consen 210 RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTAS 270 (362)
T ss_pred cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEec
Confidence 57777776 6778999999999999999999999999999999999874 35666777665
No 120
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.9e-22 Score=225.79 Aligned_cols=690 Identities=14% Similarity=0.121 Sum_probs=421.6
Q ss_pred CcceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe--cccCCCEEEEEEecCCCEEEEEECCCeEEEE
Q 000936 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF--DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (1219)
Q Consensus 1 ml~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l--~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vW 78 (1219)
|.++|+||+..|.-+.|+.+.+.|-++..+|.|.||-+-.|...... ....+.|.+++|+.+|..++....||.|.|=
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG 142 (1189)
T ss_pred hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence 66899999999999999999999999999999999998887655443 2356679999999999999999999999998
Q ss_pred EcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-------eEEE----EEecCCCCeEEEEEe---
Q 000936 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-------TCIS----VLTGHNHYVMCASFH--- 144 (1219)
Q Consensus 79 d~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~-------~~i~----~~~~h~~~V~~l~~s--- 144 (1219)
.++..+ +..-.-.......+.|++|...++.+-..|.+.++|.+.. .+.. .++.....+..+.|.
T Consensus 143 svdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~ 221 (1189)
T KOG2041|consen 143 SVDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP 221 (1189)
T ss_pred eeccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc
Confidence 876433 2211111223457899999998888888999999997632 1211 122233346666664
Q ss_pred -----cCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEE
Q 000936 145 -----PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLI 219 (1219)
Q Consensus 145 -----p~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l 219 (1219)
|+...++++...|.+.+..-.+.... .+....-.+..+.|+++|..|
T Consensus 222 ~~~v~pdrP~lavcy~nGr~QiMR~eND~~P----------------------------vv~dtgm~~vgakWnh~G~vL 273 (1189)
T KOG2041|consen 222 YQPVPPDRPRLAVCYANGRMQIMRSENDPEP----------------------------VVVDTGMKIVGAKWNHNGAVL 273 (1189)
T ss_pred cccCCCCCCEEEEEEcCceehhhhhcCCCCC----------------------------eEEecccEeecceecCCCcEE
Confidence 46678999999998888655442221 122233567889999999999
Q ss_pred EEEeCC---------CeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcE------------------
Q 000936 220 VSGADD---------RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSI------------------ 272 (1219)
Q Consensus 220 ~sg~~d---------g~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I------------------ 272 (1219)
++++.+ +.|.+|..-... +.+++.....|++++|-..|-.++.+- |+.|
T Consensus 274 AvcG~~~da~~~~d~n~v~Fysp~G~i---~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~Tv 349 (1189)
T KOG2041|consen 274 AVCGNDSDADEPTDSNKVHFYSPYGHI---VGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETV 349 (1189)
T ss_pred EEccCcccccCccccceEEEeccchhh---eEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEE
Confidence 998754 356666654433 677777788899999987776655442 3333
Q ss_pred --------------EEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCee-----------E------------
Q 000936 273 --------------RVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-----------V------------ 315 (1219)
Q Consensus 273 --------------~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~-----------v------------ 315 (1219)
.+||..+.+.... .-..+.+++++.+.-.++.-.+++.+ +
T Consensus 350 Vy~y~~~e~p~y~i~Fwdtk~nek~vK---~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~ 426 (1189)
T KOG2041|consen 350 VYVYQKEELPQYGIMFWDTKTNEKTVK---TVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTS 426 (1189)
T ss_pred EEEEccCCCcceEEEEEecccChhhhh---hhcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCc
Confidence 3444333221100 11123344555554445444443322 1
Q ss_pred --EEecCCcceEE-ecCCEEEEEeCCeEEEEEecCCcceeeEee---cC-------------------------CCCCCC
Q 000936 316 --FKLERERPAFA-VSGDSLFYAKDRFLRYYEFSTQKDTQVIPI---RR-------------------------PGSTSL 364 (1219)
Q Consensus 316 --~~l~~~~~~~s-~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~---~~-------------------------~~~~~~ 364 (1219)
++...-+|.|. ..+..++.++...+.+|.+...+....... +. .|.
T Consensus 427 lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~--- 503 (1189)
T KOG2041|consen 427 LDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGS--- 503 (1189)
T ss_pred CCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccC---
Confidence 11222234333 345555555777888888764332211110 00 111
Q ss_pred CCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC--
Q 000936 365 NQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-- 442 (1219)
Q Consensus 365 ~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-- 442 (1219)
..+|..++.+. +.+++ +. ..|.|.-|.++..... ....-...+.++...-+...++.-.--|.+.+.|+.
T Consensus 504 ~DpICAl~~sd--k~l~v-ar-eSG~I~rySl~nv~l~----n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d 575 (1189)
T KOG2041|consen 504 KDPICALCISD--KFLMV-AR-ESGGIYRYSLNNVVLT----NSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYD 575 (1189)
T ss_pred CCcceeeeecc--eEEEE-Ee-ccCceEEEEecceeee----eccccCchheeEeeccCcchhhhhhhhceeeeeecccc
Confidence 11455555542 33333 33 4567777777653221 111222346667776666666666667888888876
Q ss_pred --CceeEeee-CCc-ceEEEEEeCCCcEEEE--eCCeEEEEEcCCCeEEEEEecCCeeEEEEcCCCCEEEEEeCCeEEEE
Q 000936 443 --NEVVKKSI-LPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIA 516 (1219)
Q Consensus 443 --~~~~~~i~-~~~-~v~~l~~s~dg~~L~s--~d~~I~l~dl~~~~~l~~~~~~~v~~v~ws~dg~~la~~s~~~i~i~ 516 (1219)
+..++-+. ... .|.++.|..|+..|+. ....++|++=.+-+.-.+ ..| ++ +
T Consensus 576 ~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgndpeEp~s------------~sG-yI----------c 632 (1189)
T KOG2041|consen 576 FDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPEEPSS------------VSG-YI----------C 632 (1189)
T ss_pred cCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCcCcccccc------------ccc-eE----------E
Confidence 34444332 233 7889999988665533 345677775433221000 001 11 1
Q ss_pred ecCccceeeeeeeeEEeeeEEecCCeEEEEcCCeeeEEecCCceeEEEeccccE---EEEEEe----------CCEEEEE
Q 000936 517 SKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPI---YITKVS----------GNTIFCL 583 (1219)
Q Consensus 517 ~~~l~~~~~~~e~~~iks~~wd~~~~~iy~t~~~iky~l~~g~~~~i~~~~~~~---~l~~~~----------~~~l~~l 583 (1219)
. .|...|+|...|+ ++. +..+.-+-++++- .|+.+.... --+++. .++++-+
T Consensus 633 ~---------FedLeitsVlld~--Il~-~pE~pnk~~ii~~---~ikslrD~~~Lve~vgledA~qfiEdnPHprLWrl 697 (1189)
T KOG2041|consen 633 L---------FEDLEITSVLLDK--ILL-TPENPNKTCIIEV---MIKSLRDVMNLVEAVGLEDAIQFIEDNPHPRLWRL 697 (1189)
T ss_pred E---------eeceEEEEEEHhh--Hhc-CcCCCCcceEEEE---EehhhhhHHHHHHHhchHHHHHHHhcCCchHHHHH
Confidence 0 1122233333220 000 0000000011000 011111110 001111 2233333
Q ss_pred ecCCceEEEEeCchhHhHHHHHhccCHHHH-----HHhhhcCcccchhHHHHHHhCCChhhhhccccCcch---hhhHHh
Q 000936 584 DRDGKNRAIVIDATEYIFKLSLLRKRYDHV-----MSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERT---RFNLAL 655 (1219)
Q Consensus 584 ~~~~~~~~~~ld~~e~~f~~~l~~~~~~~a-----~~~i~~~~~~~~~i~~~l~~~g~~e~Al~~~~d~~~---rf~lal 655 (1219)
-.+..++.+.++..|..| ++.++|..+ ++-+.+..+....|.+| -|-.|+|..++-|... ..+|-+
T Consensus 698 lAe~Al~Kl~l~tAE~AF---Vrc~dY~Gik~vkrl~~i~s~~~q~aei~~~---~g~feeaek~yld~drrDLAielr~ 771 (1189)
T KOG2041|consen 698 LAEYALFKLALDTAEHAF---VRCGDYAGIKLVKRLRTIHSKEQQRAEISAF---YGEFEEAEKLYLDADRRDLAIELRK 771 (1189)
T ss_pred HHHHHHHHHhhhhHhhhh---hhhccccchhHHHHhhhhhhHHHHhHhHhhh---hcchhHhhhhhhccchhhhhHHHHH
Confidence 334444455566666555 455666533 11111111111233344 3556777777766654 356667
Q ss_pred hcCCHHHHHHHHHHhC-------ChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHHHHHHc
Q 000936 656 ESGNIQIAVASAKEID-------EKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVK 728 (1219)
Q Consensus 656 ~~g~~~~A~~~a~~l~-------~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~~~~~ 728 (1219)
.+|+|-..++.++.-. ....|+.+|+.......|+.|.++|.++++.+..+.+|....+++.|+++++.....
T Consensus 772 klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~ 851 (1189)
T KOG2041|consen 772 KLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPED 851 (1189)
T ss_pred hhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcc
Confidence 7899999999998721 156899999999999999999999999999999999999999999999998866444
Q ss_pred CCh-hHHHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcC
Q 000936 729 NDV-MGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELG 781 (1219)
Q Consensus 729 ~~~-~~~~~~al~lgd~~eai~i~~~~g~~~~A~~la~~~g~~~~a~~l~~~~~ 781 (1219)
... ...++++...|+.++|+..|++.++...|+.+...+++|.+|.+|++.+.
T Consensus 852 s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 852 SELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444 34567788899999999999999999999999999999999999998765
No 121
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.9e-23 Score=210.24 Aligned_cols=295 Identities=15% Similarity=0.187 Sum_probs=221.2
Q ss_pred cceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE--EEe--cccCCCEEEEEEecCCCEEEEE-ECCCeEE
Q 000936 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI--DRF--DEHDGPVRGVHFHKSQPLFVSG-GDDYKIK 76 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i--~~l--~~h~~~V~~l~fsp~~~~Lasg-s~Dg~I~ 76 (1219)
+..|+||.+.|++++|+.||++|++++.|++|+||++++-+.. +.+ .-.-+.-+.+.|+||-+-++.. -...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3568999999999999999999999999999999998763211 111 0111234788999998855544 4556899
Q ss_pred EEEcCC---CeEEEE---------EccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEe
Q 000936 77 VWNYKM---HRCLFT---------LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFH 144 (1219)
Q Consensus 77 vWd~~~---~~~~~~---------l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~s 144 (1219)
+|.+.. |...+. -..|.-.|..+-.-.++.+|++++.|..|.+|++. |+.+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 997642 221111 12355567777777888899999999999999998 88888887766677788999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeC
Q 000936 145 PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (1219)
Q Consensus 145 p~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~ 224 (1219)
|+|+++++++-.-.|+||.+--.+...+. +..-.+.+.||...|.+++|+++...+++.+.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fq-------------------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQ-------------------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchh-------------------hhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence 99999999999999999997433222111 11224578999999999999999999999999
Q ss_pred CCeEEEEECCCC-------CeeeEE--eecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEe-cCCCCEE
Q 000936 225 DRQVKLWRMNET-------KAWEVD--TLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR-REHDRFW 294 (1219)
Q Consensus 225 dg~I~iwd~~~~-------~~~~~~--~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~-~~~~~i~ 294 (1219)
||.+++||.+-. +..... .+....+....+.++|+|+.|+.+. ..+++++..++++...++. .|...|.
T Consensus 299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is 377 (420)
T KOG2096|consen 299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTIS 377 (420)
T ss_pred CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCcee
Confidence 999999997632 110011 1112233445899999999888765 4579999999888776664 4677899
Q ss_pred EEEEeCCCCEEEEEeCCCeeEEE
Q 000936 295 ILASHPEMNLLAAGHDSGMIVFK 317 (1219)
Q Consensus 295 ~l~~sp~~~~la~g~d~gi~v~~ 317 (1219)
+++|+++|++++++.+..++++.
T Consensus 378 ~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 378 SISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred eEEecCCCcEEeeecceeeeeec
Confidence 99999999999999987776664
No 122
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.91 E-value=1.5e-20 Score=205.40 Aligned_cols=584 Identities=15% Similarity=0.191 Sum_probs=351.7
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEE
Q 000936 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF 101 (1219)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~f 101 (1219)
..++.++.||.+.|.+ +.++....+..|.+.|.+-.|+|+|.-|+++|.||.|++|+ ++|-...++.....+|+|++|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 4678888999999998 78888889999999999999999999999999999999998 566665666667789999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceee
Q 000936 102 HHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRL 181 (1219)
Q Consensus 102 s~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~ 181 (1219)
.|+++.++.+. .+.+.|=.+.-...+...+.|.+-|.++.|+|..+.+++|++|-..++||-.+.
T Consensus 154 ~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-------------- 218 (737)
T KOG1524|consen 154 APNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-------------- 218 (737)
T ss_pred CCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc--------------
Confidence 99988766654 456777777777777888999999999999999999999999999999997652
Q ss_pred ccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCC
Q 000936 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD 261 (1219)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~ 261 (1219)
..+....|+.+|++++|+|+ ..++.++. .+.++ -....+.|..++||+||.
T Consensus 219 --------------~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~-------------~~p~~GSifnlsWS~DGT 269 (737)
T KOG1524|consen 219 --------------NLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF-------------SSPRVGSIFNLSWSADGT 269 (737)
T ss_pred --------------ccccCChhccceeeeeeccc-cceeeeee-eeeee-------------cCCCccceEEEEEcCCCc
Confidence 23345578999999999999 66666653 23331 123457789999999999
Q ss_pred EEEEEeCCCcEEEEeCCC-------CeeEEE------Ee----------cCCCCEEEEEEeCCCCEEEEEeCCCeeEEEe
Q 000936 262 IIVSNSEDKSIRVWDVTK-------RTGVQT------FR----------REHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1219)
Q Consensus 262 ~L~s~s~dg~I~iwdl~~-------~~~~~~------~~----------~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l 318 (1219)
.++.|+..|.+.+=..-. .+...+ .+ ...+++...+ -.-.+|++.....+++|.-
T Consensus 270 Q~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~p~rv~k~s--L~Y~hLvvaTs~qvyiys~ 347 (737)
T KOG1524|consen 270 QATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEFPQRVVKFS--LGYGHLVVATSLQVYIYSE 347 (737)
T ss_pred eeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehhhhhHHHHhhCccceeeee--eceeEEEEEeccEEEEEec
Confidence 999999999875533211 111110 11 1123333333 3334566666666666655
Q ss_pred cCCcceEEecC-----------CEEEEE-eCCeEEEEEecCCcceeeEeecCCCCC-CCCCCCeEEEEccCCCEEEEEEe
Q 000936 319 ERERPAFAVSG-----------DSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGST-SLNQSPRTLSYSPTENAVLICSD 385 (1219)
Q Consensus 319 ~~~~~~~s~~~-----------~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdg~~llv~~~ 385 (1219)
..-+.....++ ...+.. +..++.+|....... ...+.+|.. + --.-+.+++. ...+++-.+
T Consensus 348 knwntpiiidgre~tr~lieq~ek~fli~dgsSi~lytyegR~~---~np~~Pg~~~d-lL~~rtlsLa--ndtLaird~ 421 (737)
T KOG1524|consen 348 KNWNTPIIIDGREDTRNLIEQGEKYFLILDGSSIWLYTYEGRLH---LNPRYPGSQID-LLTWRTLSLA--NDTLAIRDN 421 (737)
T ss_pred CCccCcEEEeccccchhHhhhhhhheEEecCcEEEEEEecCcee---cCCCCCCcccc-cccceeeecc--cceEEeecC
Confidence 44333333333 233333 667777877765332 222222220 1 0011233333 335666666
Q ss_pred CCCCEEEEEEe-cCCCC-CCCccccccccCceeEEEEE----eCCeEEEEEcCCCEEEEEecC--CceeEeeeCCcceEE
Q 000936 386 VDGGSYELYVI-PKDSI-GRGDSVQDAKKGLGGSAIFI----ARNRFAVLDKSSNQVLVKNLK--NEVVKKSILPIAADA 457 (1219)
Q Consensus 386 ~~dg~i~l~~~-~~~~~-~~~~~~~~~~~~~i~~~~fs----~d~~~l~~~~~dg~I~Iwdl~--~~~~~~i~~~~~v~~ 457 (1219)
.+...+.+|+. +.... +.. ..-.|...+..++.. ++.+.++.-+.++.+.|-.++ +..-+.++...-|..
T Consensus 422 ad~kvlhlFd~istgk~qgDg--k~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGTmVht 499 (737)
T KOG1524|consen 422 ADPKVLHLFDLISTGKRQGDG--KSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGTMVHT 499 (737)
T ss_pred CCCeeEEeccCCCCCcccCCc--cccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhhhhhh
Confidence 66677788886 32211 110 112334444444443 344667766667777776665 333333333334555
Q ss_pred EEEeCCCcEEEE-eCCeEEEEEcCCCeEEEEEecCCeeEEEEcCCCCEEEEEeCCeEEEEecCccceeeeeeeeEEeeeE
Q 000936 458 IFYAGTGNLLCR-AEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGA 536 (1219)
Q Consensus 458 l~~s~dg~~L~s-~d~~I~l~dl~~~~~l~~~~~~~v~~v~ws~dg~~la~~s~~~i~i~~~~l~~~~~~~e~~~iks~~ 536 (1219)
++|+..-.+|+- .|+.+.+|-...-- ++ |...|. ..+..++
T Consensus 500 LawndttNiLcglqDt~fsVWy~pn~v--------------yv-DrdiLp------kTlierd----------------- 541 (737)
T KOG1524|consen 500 LAWNDTTNILCGLQDTCFSVWYYPNEV--------------YV-DRDILP------KTLIERD----------------- 541 (737)
T ss_pred hhhccccceeeeeccceEEEEEcCCcc--------------ee-cccccc------hhheecc-----------------
Confidence 555555444432 35555555332110 00 000000 0000000
Q ss_pred EecCCeEEEEcCCeeeEEecCCceeEEEeccccEEEEEEeCCEEEEEecCCceEEEEeCchhHhHHHHHhccCHHHHHHh
Q 000936 537 WDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSM 616 (1219)
Q Consensus 537 wd~~~~~iy~t~~~iky~l~~g~~~~i~~~~~~~~l~~~~~~~l~~l~~~~~~~~~~ld~~e~~f~~~l~~~~~~~a~~~ 616 (1219)
.--|....++.-+ -|....|+..+.++..+++.. |+ ...+ .++..+.+++|.++
T Consensus 542 -----t~efgKnpqIvsF--vgNqvtirrsdG~LlpisV~p---y~-------------~iL~---e~~sssKWeqavRL 595 (737)
T KOG1524|consen 542 -----TTEFGKNPQIVSF--VGNQVTIRRSDGALLPISVNP---YP-------------EILH---EYLSSSKWEQAVRL 595 (737)
T ss_pred -----hhhccCCcceeee--eccEEEEEeccCceEeeeccc---cH-------------HHHH---HHhccchHHHHHHH
Confidence 0000011111111 122222222222222222211 11 1111 23567889999999
Q ss_pred hhcCcccchhHHHHHHhCCChhhhhccccCcchhhhHHhhcCCHH---HHHHHHHH---------hCC-hhHHHHHHHHH
Q 000936 617 IRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQ---IAVASAKE---------IDE-KDHWYRLGVEA 683 (1219)
Q Consensus 617 i~~~~~~~~~i~~~l~~~g~~e~Al~~~~d~~~rf~lal~~g~~~---~A~~~a~~---------l~~-~~~w~~La~~a 683 (1219)
.|..+. +.+|+.|. .+|+...+|. .|+.++.+ +++ +..-+++|+..
T Consensus 596 Crfv~e--qTMWAtlA-------------------a~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~~ 654 (737)
T KOG1524|consen 596 CRFVQE--QTMWATLA-------------------AVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAENS 654 (737)
T ss_pred HHhccc--hHHHHHHH-------------------HHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHHH
Confidence 998554 89999876 2333333333 23333222 111 34567899999
Q ss_pred HHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHHHHHHcCChhHHHHHHHhcCCHHHHHHHHHHcCCC
Q 000936 684 LRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHL 757 (1219)
Q Consensus 684 l~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~~~~~~~~~~~~~~al~lgd~~eai~i~~~~g~~ 757 (1219)
+..|+..+||..+.+.|-......|.+..-|++++.++....+ ..... =...+.++|..+|+-
T Consensus 655 l~~G~~~eAe~iLl~~gl~~qav~lni~m~nW~RALEl~~K~K---~~v~~--------Vl~yR~KyLk~~g~~ 717 (737)
T KOG1524|consen 655 LMLGRMLEAETILLHGGLIEQAVGLNIRMHNWRRALELSQKHK---ELVPR--------VLQYRRKYLKALGRE 717 (737)
T ss_pred HHhccchhhhHHHHhcchHHHhhhhhhhhhhHHHHHHHHHhHH---HHHHH--------HHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999998877765322 11111 123567777777764
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.1e-23 Score=206.34 Aligned_cols=248 Identities=20% Similarity=0.362 Sum_probs=209.5
Q ss_pred cccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCC---eEEEEecccCCCEEEEEEec--CCCEEEEEECCCeEEEEEc
Q 000936 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVHFHK--SQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 6 ~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g---~~i~~l~~h~~~V~~l~fsp--~~~~Lasgs~Dg~I~vWd~ 80 (1219)
..|.+-|..+...--|++||+++.|++|+|+.++.. +++.++.+|.+||..++|-. .|.+|++++.||+|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 479999999988888999999999999999999754 57889999999999999955 7899999999999999998
Q ss_pred CCCe--EEEEEccCCCCEEEEEEcCCC--CEEEEEECCCeEEEEECCCC---eEEEEEecCCCCeEEEEEecC---C---
Q 000936 81 KMHR--CLFTLLGHLDYIRTVQFHHEY--PWIVSASDDQTIRIWNWQSR---TCISVLTGHNHYVMCASFHPK---E--- 147 (1219)
Q Consensus 81 ~~~~--~~~~l~~h~~~I~~l~fs~d~--~~l~s~s~Dg~I~iwd~~s~---~~i~~~~~h~~~V~~l~~sp~---~--- 147 (1219)
.+++ .......|...|.+++|-|.+ -.|++++.||.|.|.+.++. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8774 344567899999999999864 58999999999999988754 223455789999999999986 3
Q ss_pred --------CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCC---
Q 000936 148 --------DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL--- 216 (1219)
Q Consensus 148 --------~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g--- 216 (1219)
+.|++|+.|..|+||+....+-. ....+.+|..-|..++|.|.-
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~-------------------------~e~~l~~H~dwVRDVAwaP~~gl~ 222 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK-------------------------LERTLEGHKDWVRDVAWAPSVGLP 222 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchh-------------------------hhhhhhhcchhhhhhhhccccCCC
Confidence 46999999999999998774221 233588999999999999964
Q ss_pred -CEEEEEeCCCeEEEEECCCC-CeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000936 217 -PLIVSGADDRQVKLWRMNET-KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1219)
Q Consensus 217 -~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~ 278 (1219)
..|++++.||++.||..+.. ..|....+......+..++||+.|+.|++++.|+.|.+|.-+
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 47999999999999988743 445566666677889999999999999999999999999743
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6e-23 Score=204.34 Aligned_cols=247 Identities=22% Similarity=0.301 Sum_probs=201.1
Q ss_pred cccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC---eEEEEEccCCCCEEEEEEcC--CCCEEEEEECCCeEEEEEC
Q 000936 48 DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH---RCLFTLLGHLDYIRTVQFHH--EYPWIVSASDDQTIRIWNW 122 (1219)
Q Consensus 48 ~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~---~~~~~l~~h~~~I~~l~fs~--d~~~l~s~s~Dg~I~iwd~ 122 (1219)
..|+..|..+...--|++|+|++.|++|+|+..++. +.+.++.||.++|..++|-. -|..|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 468999998888889999999999999999998754 57889999999999999977 7889999999999999998
Q ss_pred CCCeE--EEEEecCCCCeEEEEEecCC--CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEE
Q 000936 123 QSRTC--ISVLTGHNHYVMCASFHPKE--DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1219)
Q Consensus 123 ~s~~~--i~~~~~h~~~V~~l~~sp~~--~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1219)
++++- ......|...|++++|.|.+ -.|++++.||.|.|.+.+....- ....
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w------------------------~t~k 143 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW------------------------TTSK 143 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc------------------------cchh
Confidence 87743 44567899999999999975 68999999999999998763110 1122
Q ss_pred EEeecCCCeEEEEEcCC---C-----------CEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCC----
Q 000936 199 VLEGHDRGVNWAAFHPT---L-----------PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ---- 260 (1219)
Q Consensus 199 ~~~~~~~~V~~l~~sp~---g-----------~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g---- 260 (1219)
....|.-+|++++|.|. | +.|++|+.|..|+||+..+..-..-.++.+|.+.|+.++|.|.-
T Consensus 144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~ 223 (299)
T KOG1332|consen 144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPK 223 (299)
T ss_pred hhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCc
Confidence 55679999999999996 4 46999999999999999987433345699999999999999953
Q ss_pred CEEEEEeCCCcEEEEeCCCCee---EEEEecCCCCEEEEEEeCCCCEEEEEe-CCCeeEEEe
Q 000936 261 DIIVSNSEDKSIRVWDVTKRTG---VQTFRREHDRFWILASHPEMNLLAAGH-DSGMIVFKL 318 (1219)
Q Consensus 261 ~~L~s~s~dg~I~iwdl~~~~~---~~~~~~~~~~i~~l~~sp~~~~la~g~-d~gi~v~~l 318 (1219)
..|+++++||++.||....... ...+....+.++.++||+.|++|+++. ++.+.+|+-
T Consensus 224 s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 224 STIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred eeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 5799999999999998663211 112333567899999999999999765 444555543
No 125
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.3e-21 Score=191.63 Aligned_cols=247 Identities=19% Similarity=0.342 Sum_probs=209.8
Q ss_pred eecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeE-----EEEecccCCCEEEEEEec----CCCEEEEEE-CCC
Q 000936 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL-----IDRFDEHDGPVRGVHFHK----SQPLFVSGG-DDY 73 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~-----i~~l~~h~~~V~~l~fsp----~~~~Lasgs-~Dg 73 (1219)
+-+.|.+.|.|.+|||+|.+|++|+.|.+|++.-+...+. -..|.-|++.|+.++|-. .+.+|++++ .|.
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 3456899999999999999999999999999987654322 235678999999999954 345778765 578
Q ss_pred eEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec-------CCCCeEEEEEecC
Q 000936 74 KIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG-------HNHYVMCASFHPK 146 (1219)
Q Consensus 74 ~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~-------h~~~V~~l~~sp~ 146 (1219)
.|++-|..+|+..+.+.+|.+.|.++ ++-++-.+++|+.|.+|++||++-..++.++.. .++.|.+++..|.
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps 242 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS 242 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence 88888999999999999999999887 445677899999999999999998888887642 2357999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCC
Q 000936 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR 226 (1219)
Q Consensus 147 ~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg 226 (1219)
|+++++|-.|....+||+++++. ...+..|...|.++.|+|...++++++.|.
T Consensus 243 grll~sg~~dssc~lydirg~r~---------------------------iq~f~phsadir~vrfsp~a~yllt~syd~ 295 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGGRM---------------------------IQRFHPHSADIRCVRFSPGAHYLLTCSYDM 295 (350)
T ss_pred cceeeeccCCCceEEEEeeCCce---------------------------eeeeCCCccceeEEEeCCCceEEEEecccc
Confidence 99999999999999999998764 346778999999999999999999999999
Q ss_pred eEEEEECCCCC--eeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000936 227 QVKLWRMNETK--AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1219)
Q Consensus 227 ~I~iwd~~~~~--~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~ 278 (1219)
.|++-|+...- ..++.....|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 296 ~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 296 KIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999987642 23456667899999999999999999999999999999764
No 126
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1e-21 Score=202.10 Aligned_cols=309 Identities=19% Similarity=0.303 Sum_probs=219.3
Q ss_pred EEEEECCCCeEE-----EEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe-----EEEEEccCCCCEEEEEEc
Q 000936 33 IQLWDYRMGTLI-----DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR-----CLFTLLGHLDYIRTVQFH 102 (1219)
Q Consensus 33 I~iWd~~~g~~i-----~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~-----~~~~l~~h~~~I~~l~fs 102 (1219)
++-|+....+.. ..+++|.+.|++++|+.||++|+|++.|+.|++|++++.. +++. +-.-+..+.+.|.
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFA 141 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEEC
Confidence 455665544433 3457999999999999999999999999999999987521 1111 1122356789999
Q ss_pred CCCC-EEEEEECCCeEEEEECCCC---eEEE---------EEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCcc
Q 000936 103 HEYP-WIVSASDDQTIRIWNWQSR---TCIS---------VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169 (1219)
Q Consensus 103 ~d~~-~l~s~s~Dg~I~iwd~~s~---~~i~---------~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~ 169 (1219)
||-+ .++++-...++++|.+... .... .-..|.-.+..+-...++.+|++++.|..|.+|++++ +.
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-q~ 220 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-QL 220 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-ce
Confidence 9987 4555556678999976432 1111 1124556677777777789999999999999999984 22
Q ss_pred ccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC------eeeEEe
Q 000936 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK------AWEVDT 243 (1219)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~------~~~~~~ 243 (1219)
. ..+......-...+.+|+|+++++++-.-.|++|.+--.+ ...+..
T Consensus 221 L---------------------------~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~ 273 (420)
T KOG2096|consen 221 L---------------------------QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS 273 (420)
T ss_pred e---------------------------eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhe
Confidence 1 1233334445668899999999999999999999864221 123677
Q ss_pred ecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcc
Q 000936 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP 323 (1219)
Q Consensus 244 ~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~ 323 (1219)
+.||...|..++|+++.+.+++.|.||++++||.+-. +.... |..+|-.|.
T Consensus 274 LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr-----Y~~~q----------Dpk~Lk~g~-------------- 324 (420)
T KOG2096|consen 274 LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR-----YEAGQ----------DPKILKEGS-------------- 324 (420)
T ss_pred eccchhheeeeeeCCCcceeEEEecCCcEEEeeccce-----EecCC----------CchHhhcCC--------------
Confidence 8999999999999999999999999999999997521 11111 111111110
Q ss_pred eEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCC
Q 000936 324 AFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGR 403 (1219)
Q Consensus 324 ~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~ 403 (1219)
.++...+. .+..++++|.|+.++++.+ ..+++|.........
T Consensus 325 ------------------------------~pl~aag~-----~p~RL~lsP~g~~lA~s~g---s~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 325 ------------------------------APLHAAGS-----EPVRLELSPSGDSLAVSFG---SDLKVFASEDGKDYP 366 (420)
T ss_pred ------------------------------cchhhcCC-----CceEEEeCCCCcEEEeecC---CceEEEEcccCccch
Confidence 11111121 4557999999999998887 678888876543222
Q ss_pred CccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEe
Q 000936 404 GDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKN 440 (1219)
Q Consensus 404 ~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwd 440 (1219)
. ....|.+.|.++.|+++|+++++++ |..+++..
T Consensus 367 ~--~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 367 E--LEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred h--HHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 2 3567888999999999999999999 78888764
No 127
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=1.3e-22 Score=219.94 Aligned_cols=246 Identities=23% Similarity=0.423 Sum_probs=204.4
Q ss_pred ccCCCEEEEEEeCCCC-EEEEEECCCeEEEEECCCCe----------EEEEecccCCCEEEEEEecCCC-EEEEEECCCe
Q 000936 7 TKSNRVKGLSFHSKRP-WILASLHSGVIQLWDYRMGT----------LIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYK 74 (1219)
Q Consensus 7 ~h~~~V~~i~fspdg~-~Lasg~~dg~I~iWd~~~g~----------~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~ 74 (1219)
.|.+.|..+.+-|+.+ .+|+.+..+.|.|||+.+-. .-.++.+|...-.+++|++... .|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4888999999999665 45566788999999986421 1226778998788999999655 8999999999
Q ss_pred EEEEEcCCC-------eEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECC--CCeEEEEEecCCCCeEEEEEe
Q 000936 75 IKVWNYKMH-------RCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQ--SRTCISVLTGHNHYVMCASFH 144 (1219)
Q Consensus 75 I~vWd~~~~-------~~~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~--s~~~i~~~~~h~~~V~~l~~s 144 (1219)
|++||+... .+...+.+|.+.|..++|++-.. .++++++|+.+.|||.+ +.++.....+|...|.|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 999998643 23556789999999999999654 78899999999999999 556677788999999999999
Q ss_pred cCC-CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCC-CEEEEE
Q 000936 145 PKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSG 222 (1219)
Q Consensus 145 p~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sg 222 (1219)
|-+ ..|++||.|++|.+||+++.... ...+.+|...|..+.|+|.. ..|+++
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~--------------------------lh~~e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKP--------------------------LHTFEGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccC--------------------------ceeccCCCcceEEEEeCCCCCceeEec
Confidence 965 68899999999999999986652 45789999999999999965 578899
Q ss_pred eCCCeEEEEECCCCCe------------eeEEeecCCCCCeEEEEEccCCCE-EEEEeCCCcEEEEeCC
Q 000936 223 ADDRQVKLWRMNETKA------------WEVDTLRGHMNNVSCVMFHAKQDI-IVSNSEDKSIRVWDVT 278 (1219)
Q Consensus 223 ~~dg~I~iwd~~~~~~------------~~~~~~~~h~~~I~~l~~sp~g~~-L~s~s~dg~I~iwdl~ 278 (1219)
+.|+.+.+||+..-.. ..+..-.||...|..+.|+|+..+ |++.++|+.+.||.+.
T Consensus 336 g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 336 GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999999864221 124667899999999999998765 6778999999999976
No 128
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=6.6e-22 Score=223.14 Aligned_cols=284 Identities=24% Similarity=0.394 Sum_probs=232.8
Q ss_pred CeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE--EEEccCCCCEEE-EEEcC-CCCEEEEEECCCe
Q 000936 41 GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL--FTLLGHLDYIRT-VQFHH-EYPWIVSASDDQT 116 (1219)
Q Consensus 41 g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~--~~l~~h~~~I~~-l~fs~-d~~~l~s~s~Dg~ 116 (1219)
-++.+.+.+|+..|+.+++.+.. .++++|.||++++|+-..++.+ ..+.+|.+.|.. +++-+ ++-.+++|+.|.+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 35667889999999999976655 7999999999999997655544 346678887777 88876 3336999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceE
Q 000936 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (1219)
Q Consensus 117 I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1219)
|.+|...+..++.++.+|...|.|+....++. +++||.|.++++|-... +
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-----------------------------l 132 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-----------------------------L 132 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh-----------------------------h
Confidence 99999999999999999999999999887776 99999999999998765 3
Q ss_pred EEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 000936 197 KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (1219)
Q Consensus 197 ~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwd 276 (1219)
...+.+|...|.++..-|.+ .+++|+.|.+|++|.- ++. +.++.+|.+.|.++++-+++ .+++++.||.|+.|+
T Consensus 133 ~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~--l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~ 206 (745)
T KOG0301|consen 133 VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTL--LKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWD 206 (745)
T ss_pred hcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cch--hhhhccchhheeeeEEecCC-CeEeecCCceEEEEe
Confidence 44688999999999999987 8999999999999976 333 78999999999999998764 488999999999999
Q ss_pred CCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEee
Q 000936 277 VTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPI 356 (1219)
Q Consensus 277 l~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 356 (1219)
+ ++..+..+.+|..-+++++..+++..+++++ .|+++++|+.. ...+.+++
T Consensus 207 ~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g--------------------------EDrtlriW~~~--e~~q~I~l 257 (745)
T KOG0301|consen 207 L-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG--------------------------EDRTLRIWKKD--ECVQVITL 257 (745)
T ss_pred c-cCceeeeeeccceEEEEEEecCCCCeEEEec--------------------------CCceEEEeecC--ceEEEEec
Confidence 8 7899999999999999999766666666655 37778888766 34334433
Q ss_pred cCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCC
Q 000936 357 RRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDS 400 (1219)
Q Consensus 357 ~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~ 400 (1219)
+ +. .+.++.+-++|. +++++ .||.+++|......
T Consensus 258 P--tt-----siWsa~~L~NgD--Ivvg~-SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 258 P--TT-----SIWSAKVLLNGD--IVVGG-SDGRVRVFTVDKDR 291 (745)
T ss_pred C--cc-----ceEEEEEeeCCC--EEEec-cCceEEEEEecccc
Confidence 3 22 677888888998 44444 45899999987543
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.7e-22 Score=218.69 Aligned_cols=277 Identities=15% Similarity=0.286 Sum_probs=234.6
Q ss_pred ccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCC---eEEEEec--ccCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 000936 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG---TLIDRFD--EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1219)
Q Consensus 7 ~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g---~~i~~l~--~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1219)
.|..-|..+++|...+++.+|+ .|.|+|||+... ..+..+. ..+.-|+++..+|||+.|++||.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 5888899999999999999997 577999998643 3334443 356779999999999999999999999999997
Q ss_pred CCeE--EEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeE
Q 000936 82 MHRC--LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTV 159 (1219)
Q Consensus 82 ~~~~--~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I 159 (1219)
...+ ...+....-....++.+||.+..+++..||.|.|||+.+...++.+.+|...+.|+..+++|..|.+|+.|.+|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 5433 33344334567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 000936 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (1219)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~ 239 (1219)
|.||++.++.... ....+.|.++.++|++.++++|-.++.+.+.......
T Consensus 576 RcWDlregrqlqq----------------------------hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-- 625 (705)
T KOG0639|consen 576 RCWDLREGRQLQQ----------------------------HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-- 625 (705)
T ss_pred eehhhhhhhhhhh----------------------------hhhhhhheecccCCCccceeeecccCcEEEEecCCcc--
Confidence 9999998765431 2235678999999999999999999999988877766
Q ss_pred eEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCC-CeeEE
Q 000936 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDS-GMIVF 316 (1219)
Q Consensus 240 ~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~-gi~v~ 316 (1219)
...+..|.+-|.++.|.+-|+++++.+.|..+..|...-|..+...+ ....|.+..+|.|.+++++|+.+ ...||
T Consensus 626 -kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 626 -KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred -ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEE
Confidence 56677899999999999999999999999999999988888776655 56779999999999999999854 33343
No 130
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.8e-20 Score=213.60 Aligned_cols=287 Identities=14% Similarity=0.137 Sum_probs=214.3
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEE-EEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEE
Q 000936 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLF-VSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100 (1219)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~L-asgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~ 100 (1219)
..+++++.||.|.+||..+++.+..+..|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 5678889999999999999999888876654 6789999999976 5667889999999999988877765544 57789
Q ss_pred EcCCCCEEEEE-ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCC-eEEEEECCCCccccccCCccc
Q 000936 101 FHHEYPWIVSA-SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ-TVRVWDIGALRKKTVSPADDI 178 (1219)
Q Consensus 101 fs~d~~~l~s~-s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-~I~vwd~~~~~~~~~~~~~~~ 178 (1219)
|+|+++.++++ +.++.|++||+.+++.+..+.. ...+.+++|+|+++++++++.++ .+.+||..+.+...
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~------- 151 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD------- 151 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE-------
Confidence 99999977654 5689999999999888777763 34468899999999999988765 46778876533211
Q ss_pred eeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeeEEeecCC-------CCC
Q 000936 179 LRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG-ADDRQVKLWRMNETKAWEVDTLRGH-------MNN 250 (1219)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg-~~dg~I~iwd~~~~~~~~~~~~~~h-------~~~ 250 (1219)
.. ........++|+|++++++++ ..++.|++||+.+.+. +..+..+ ...
T Consensus 152 --------------------~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~ 208 (300)
T TIGR03866 152 --------------------NV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV--IKKITFEIPGVHPEAVQ 208 (300)
T ss_pred --------------------EE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee--eeeeeecccccccccCC
Confidence 11 122345678999999988554 4689999999998765 3332211 112
Q ss_pred eEEEEEccCCCEEEE-EeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecC
Q 000936 251 VSCVMFHAKQDIIVS-NSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSG 329 (1219)
Q Consensus 251 I~~l~~sp~g~~L~s-~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~ 329 (1219)
...+.|+|+++++++ .+.++.+.+||+.+++....+. +...+++++|+|++.+|+++..
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~------------------- 268 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNG------------------- 268 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcC-------------------
Confidence 356889999998655 4556789999999888766553 3457889999999998877642
Q ss_pred CEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEcc
Q 000936 330 DSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSP 375 (1219)
Q Consensus 330 ~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 375 (1219)
.++.|.+||+.+++.+..+.+. . .+..++++|
T Consensus 269 ------~~~~i~v~d~~~~~~~~~~~~~---~-----~~~~~~~~~ 300 (300)
T TIGR03866 269 ------VSNDVSVIDVAALKVIKSIKVG---R-----LPWGVVVRP 300 (300)
T ss_pred ------CCCeEEEEECCCCcEEEEEEcc---c-----ccceeEeCC
Confidence 3567889999988775555432 1 556677664
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=210.58 Aligned_cols=291 Identities=15% Similarity=0.261 Sum_probs=233.1
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEECC--CCeEEEEEecCCCCeEEEEEecCCC-EEEEEECCCeEEEEECCCCcc
Q 000936 93 LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ--SRTCISVLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRK 169 (1219)
Q Consensus 93 ~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~--s~~~i~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~I~vwd~~~~~~ 169 (1219)
.+.|+++.|||..+.+++++.|++++||.+. ....+..+.-...+|.++.|+|+|. .+++++....+..||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999999999999999999999876 3345666666778999999999998 899999999999999988665
Q ss_pred ccccCCccceeeccccccccccccceEEEEEeec-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCC
Q 000936 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM 248 (1219)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~ 248 (1219)
....+ ..++ ...+.....+|++++|+..+..|.|.+....++.. +.++. -.
T Consensus 293 ~k~~~-------------------------~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el--i~s~K-ie 344 (514)
T KOG2055|consen 293 TKLKP-------------------------PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL--ITSFK-IE 344 (514)
T ss_pred ccccC-------------------------CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh--hheee-ec
Confidence 54322 1122 34567788899999999999999999999988876 44443 35
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC-CEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEe
Q 000936 249 NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD-RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAV 327 (1219)
Q Consensus 249 ~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~-~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~ 327 (1219)
+.|..++|+.+++.|++++.+|.|.+||++...++..+....+ .-++++.++++.++|+|++.|+
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi-------------- 410 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI-------------- 410 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce--------------
Confidence 7899999999999999999999999999999999988875443 3467888999999999998665
Q ss_pred cCCEEEEEeCCeEEEEEecC----CcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCC
Q 000936 328 SGDSLFYAKDRFLRYYEFST----QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGR 403 (1219)
Q Consensus 328 ~~~~l~~~~d~~i~v~d~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~ 403 (1219)
|.+||..+ ..+.++..+... ...|+++.|+||...+++++......+++..++....-.
T Consensus 411 ------------VNIYd~~s~~~s~~PkPik~~dNL-----tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFs 473 (514)
T KOG2055|consen 411 ------------VNIYDGNSCFASTNPKPIKTVDNL-----TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFS 473 (514)
T ss_pred ------------EEEeccchhhccCCCCchhhhhhh-----heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeec
Confidence 45666443 334444444332 238999999999999999988888899999988654422
Q ss_pred CccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC
Q 000936 404 GDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK 442 (1219)
Q Consensus 404 ~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~ 442 (1219)
-..+....-+.++|++|+|.+-+++.|..+|.+.+|.+.
T Consensus 474 NfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 474 NFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 221334556789999999999999999999999999864
No 132
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.3e-21 Score=222.57 Aligned_cols=704 Identities=12% Similarity=0.127 Sum_probs=372.3
Q ss_pred EEEEEeCCCCEEEEEEC----CCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE
Q 000936 13 KGLSFHSKRPWILASLH----SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (1219)
Q Consensus 13 ~~i~fspdg~~Lasg~~----dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~ 88 (1219)
+-++|||..+++|+++. .|+|.||- ++|++..... -.-.+++++|||..-.|++|-.-|.+.||...+.+....
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 34679999999999864 58899987 6777544332 223357799999999999999999999999887776666
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE--ecCC--CC--eEEEEEe------------------
Q 000936 89 LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL--TGHN--HY--VMCASFH------------------ 144 (1219)
Q Consensus 89 l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~--~~h~--~~--V~~l~~s------------------ 144 (1219)
...|..+|..+.||++|..++++..-|.+.+|.......+... -.|. .. ..|...+
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe 176 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDE 176 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCch
Confidence 6789999999999999999999999999999987522111111 0110 01 1111222
Q ss_pred -----------------------cCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEe
Q 000936 145 -----------------------PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1219)
Q Consensus 145 -----------------------p~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1219)
|+|..++.++.+|+|.-.|-.+....... ..+.-..+|-.....+.....
T Consensus 177 ~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k-------~dS~vQmLf~~~~eai~~i~e 249 (1416)
T KOG3617|consen 177 SALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHK-------LDSEVQMLFMGYCEAISIIIE 249 (1416)
T ss_pred hhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEE-------ccchHHHHHhcccceEEEEee
Confidence 33445555555565555553332111000 000000001000000000000
Q ss_pred ------------ecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eeEEeecCCCCCeEEEEEccCCCEEEEEe
Q 000936 202 ------------GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--WEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267 (1219)
Q Consensus 202 ------------~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~--~~~~~~~~h~~~I~~l~~sp~g~~L~s~s 267 (1219)
|....+..+..+.. .|+..|.|.+=... +-. .+...+ .....+.|++++..+..+..|.
T Consensus 250 ~lr~~l~~v~~~G~~ee~~~vk~sgk-----~GgrqGgiA~sEss-GvLr~~eKyg~-e~ge~~~c~cY~~~~~~l~agt 322 (1416)
T KOG3617|consen 250 FLRDCLIFVLAKGTSEERCAVKVSGK-----LGGRQGGIACSESS-GVLRKSEKYGL-ELGEGILCMCYGEKEIRLWAGT 322 (1416)
T ss_pred eceeeEEEecCCCchHHhhhhhhccc-----cCCccCcccccccc-ccccCCcchhh-hcCCceEEEEEeccceEEEecc
Confidence 00000001111100 11111111111100 000 000011 1245689999999999999999
Q ss_pred CCCcEEEEeCCCC-------eeEEE---EecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEE--
Q 000936 268 EDKSIRVWDVTKR-------TGVQT---FRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA-- 335 (1219)
Q Consensus 268 ~dg~I~iwdl~~~-------~~~~~---~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~-- 335 (1219)
..|.+.+|--... ....+ .+...+.|..+.|.|-.+.+++.+...+.+.. +++..+.+...++.+
T Consensus 323 ~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~ll~---E~~l~~~h~~~~~A~q~ 399 (1416)
T KOG3617|consen 323 KEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVLLG---ENSLTVKHRGKMAAIQT 399 (1416)
T ss_pred cCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheeeec---cCchHHHHhhhhHHhhh
Confidence 9999999953221 11222 23344678999999977777766655554432 333222222222222
Q ss_pred eCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCce
Q 000936 336 KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLG 415 (1219)
Q Consensus 336 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i 415 (1219)
..+++.+-...+|....+ +. ..+++.++.+.+ .++++.+ .+|..|++....+-... .........
T Consensus 400 ss~S~~L~hc~sGv~~~l---~~------~~~~~gi~l~e~--~lvvwNg---r~v~~y~lq~SG~la~~-~~~tF~cet 464 (1416)
T KOG3617|consen 400 SSNSFTLLHCTSGVSQDL---KL------SIPSAGICLGEK--QLVVWNG---RTVVTYDLQTSGSLATI-QCTTFSCET 464 (1416)
T ss_pred cCCceEEEeeccchhhhh---hh------ccchhhheeccc--eEEEEcC---ceEEEEEecccchhHHH-hhhhhcccc
Confidence 444444444333322111 00 114555665543 5666655 78999999743221111 111222223
Q ss_pred eEEEEEeCCeEEEEEcCCCEEEEEecCCceeEeeeCCc---ceEEEEEeCCCcEEEEe--CCeEEEEEcCCCeEEEEEec
Q 000936 416 GSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPI---AADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT 490 (1219)
Q Consensus 416 ~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~i~~~~---~v~~l~~s~dg~~L~s~--d~~I~l~dl~~~~~l~~~~~ 490 (1219)
++++....+-| ...+ ..|.++.+.|...+.+..+. .|.-+.. .|.+++.. .+.+.-||+...+.-.....
T Consensus 465 ~~la~~nqN~y-cies--~~Vfvrt~qGtv~q~i~~seiEg~~~~ldi--~g~~l~v~t~~~~~k~~dvsr~e~ka~~~~ 539 (1416)
T KOG3617|consen 465 TSLAIVNQNLY-CIES--DKVFVRTLQGTVRQEISLSEIEGVVVLLDI--MGELLIVQTVSTVAKRLDVSRAELKAVSYF 539 (1416)
T ss_pred chHhHhhcceE-Eecc--CcEEEEecchhhhhhccchhccCceehhhh--ccceeEEeehHHHHHHhhhhhhcccccccc
Confidence 34444444332 2333 56888888888777776655 2222222 35566543 34455566655443332221
Q ss_pred ----------CCeeEEEEcCCCCEEEEE---eC----CeEEEEecCcccee---ee-eeee--------EEeeeEEecCC
Q 000936 491 ----------PFVKYVVWSNDMESVALL---SK----HAIIIASKKLVHQC---TL-HETI--------RVKSGAWDDNG 541 (1219)
Q Consensus 491 ----------~~v~~v~ws~dg~~la~~---s~----~~i~i~~~~l~~~~---~~-~e~~--------~iks~~wd~~~ 541 (1219)
+....+..+..|+.+.+. .+ +++++||.....+. .. +|+. ..-...||.+.
T Consensus 540 ~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~~lE~ETNakkEs~ts~pvr~fWD~~e 619 (1416)
T KOG3617|consen 540 SSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMNHLEPETNAKKESSTSPPVRFFWDENE 619 (1416)
T ss_pred cccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhhccCccccccccccCCCCceeeecCCC
Confidence 345566666655544322 22 45788886543321 11 1111 11135788442
Q ss_pred --eEEEEcCCeeeEEecC---CceeEEEeccccEEEEE-E-eC--CEEEEEe-----cCCceEEEEeCchhHhHHH---H
Q 000936 542 --VFIYTTLNHIKYCLPN---GDSGIIRTLDVPIYITK-V-SG--NTIFCLD-----RDGKNRAIVIDATEYIFKL---S 604 (1219)
Q Consensus 542 --~~iy~t~~~iky~l~~---g~~~~i~~~~~~~~l~~-~-~~--~~l~~l~-----~~~~~~~~~ld~~e~~f~~---~ 604 (1219)
.++..-.....-..+. +....... ..+.++. + .. +.+.-.. ..++...+.+ +.+-|-. +
T Consensus 620 pRllv~E~~~~~p~s~pQ~ns~QPs~~~q--skVvvLt~F~seehG~ll~~~~q~~~~~~~Ll~~~V--Pn~yfvRk~~~ 695 (1416)
T KOG3617|consen 620 PRLLVVECIHVEPESTPQRNSLQPSHFVQ--SKVVVLTAFVSEEHGILLQGMQQKNLHCGKLLSVSV--PNFYFVRKSGW 695 (1416)
T ss_pred CcEEEEEeeecccccCcccccCCCccccc--cceEEEeeecccccceeeeecccCCCCccceeeeec--CceEEEecccc
Confidence 3332211000000000 00000000 1111111 1 11 1111000 1122222221 1111110 0
Q ss_pred HhccCHHHHHHhhhcCcccchhHHHHHHhCCChhhhhccccCcchhhhHHhhcCCHHHHHHHHHHhCChhHHHHHHHHHH
Q 000936 605 LLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEAL 684 (1219)
Q Consensus 605 l~~~~~~~a~~~i~~~~~~~~~i~~~l~~~g~~e~Al~~~~d~~~rf~lal~~g~~~~A~~~a~~l~~~~~w~~La~~al 684 (1219)
....+.++ +.|.. .+..+.+-.|+.- |..-+..++....|.+.+.-|+||.|++.++.+++...|+.||.+|.
T Consensus 696 d~ed~~ee--~~i~~-~~~~~pLrdFvgl----e~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McV 768 (1416)
T KOG3617|consen 696 DEEDNREE--RTIGK-TLVAKPLRDFVGL----ENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCV 768 (1416)
T ss_pred cccccccc--cccch-hhhhhhHHHhcCc----cccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 11111111 00000 0011122222211 11112234556689999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHHHHHHcCC--hhHHHHHHHhcCCHHHHHHHHHHcCCChHHHH
Q 000936 685 RQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKND--VMGQFHNALYLGDVKERVKILESAGHLPLAYI 762 (1219)
Q Consensus 685 ~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~~~~~~~--~~~~~~~al~lgd~~eai~i~~~~g~~~~A~~ 762 (1219)
+..++++|..|...+++..++..| + .++..++ ....+-.++.+|+++||..+|++|.++++-..
T Consensus 769 kT~RLDVAkVClGhm~~aRgaRAl----------R----~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~DLlNK 834 (1416)
T KOG3617|consen 769 KTRRLDVAKVCLGHMKNARGARAL----------R----RAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYDLLNK 834 (1416)
T ss_pred hhccccHHHHhhhhhhhhhhHHHH----------H----HHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888555 2 2223332 22334568999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHc
Q 000936 763 TASVHGLQDVAERLAAEL 780 (1219)
Q Consensus 763 la~~~g~~~~a~~l~~~~ 780 (1219)
++++-|+|++|.++++..
T Consensus 835 lyQs~g~w~eA~eiAE~~ 852 (1416)
T KOG3617|consen 835 LYQSQGMWSEAFEIAETK 852 (1416)
T ss_pred HHHhcccHHHHHHHHhhc
Confidence 999999999999999753
No 133
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=6.5e-21 Score=211.15 Aligned_cols=477 Identities=12% Similarity=0.217 Sum_probs=293.9
Q ss_pred ceecccCCCEEEEEEeC-CCCEEEEEECCCeEEEEECCCCeEE------EEecccCCCEEEEEEecCCCEEEEEECCCeE
Q 000936 3 TKFETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMGTLI------DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKI 75 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fsp-dg~~Lasg~~dg~I~iWd~~~g~~i------~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I 75 (1219)
-.|.+|++.|+.+.|+| +..+||+++.|..|+||.+..|... ..+.+.+-.|-++.|||...-+...+..|++
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v 152 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSV 152 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceE
Confidence 35779999999999999 5568899999999999999855221 1233345578999999976655555566899
Q ss_pred EEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEecCCCC-eEEEEEecCCCEEEEE
Q 000936 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ-SRTCISVLTGHNHY-VMCASFHPKEDLVVSA 153 (1219)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~-s~~~i~~~~~h~~~-V~~l~~sp~~~~l~s~ 153 (1219)
+|||+.+++.+..+.+|.+.|.+..|+.||..+++++.|..|+|||.+ +++.++...+|.+. =..+.|.-+-..|++.
T Consensus 153 ~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisT 232 (1012)
T KOG1445|consen 153 YITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLIST 232 (1012)
T ss_pred EEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhc
Confidence 999999999999999999999999999999999999999999999987 56778888888754 2345666444466665
Q ss_pred ECC----CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEE-EeCCCeE
Q 000936 154 SLD----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVS-GADDRQV 228 (1219)
Q Consensus 154 s~d----g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s-g~~dg~I 228 (1219)
+-+ +.|++||.+...... .........+|.---|.||.++++. |-.+.++
T Consensus 233 GF~~~R~reV~~~Dtr~f~~p~-------------------------~tleld~stGvLiPl~DpDt~llfLaGKG~~~l 287 (1012)
T KOG1445|consen 233 GFTTKRIREVRAYDTRKFGAPV-------------------------HTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKL 287 (1012)
T ss_pred ccchhhheeeeeeeccccCCcc-------------------------eeEEeecccceEeeeecCCCceEEEecCCcceE
Confidence 544 568999987632211 1111123445666678888776554 4457778
Q ss_pred EEEECCCCCeeeEEeec----------------------C--------CCCCeEEE----------EEccC---------
Q 000936 229 KLWRMNETKAWEVDTLR----------------------G--------HMNNVSCV----------MFHAK--------- 259 (1219)
Q Consensus 229 ~iwd~~~~~~~~~~~~~----------------------~--------h~~~I~~l----------~~sp~--------- 259 (1219)
..+.+...+......++ + ..+.|.-+ .||.|
T Consensus 288 ~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~ 367 (1012)
T KOG1445|consen 288 FMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAE 367 (1012)
T ss_pred EEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCc
Confidence 88877655432111110 0 00001000 01100
Q ss_pred -----CCEEEEEeCCCcEEEEeCC--------------------------------------------------------
Q 000936 260 -----QDIIVSNSEDKSIRVWDVT-------------------------------------------------------- 278 (1219)
Q Consensus 260 -----g~~L~s~s~dg~I~iwdl~-------------------------------------------------------- 278 (1219)
|.++. +.+..+.-..+.
T Consensus 368 p~~~ageWln--G~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpa 445 (1012)
T KOG1445|consen 368 PGCTAGEWLN--GTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPA 445 (1012)
T ss_pred cCcCccceec--CccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCC
Confidence 00000 000000000000
Q ss_pred --CCeeEEEE-----e----------------cCCCCEEEEE------EeCCCCEEE-----------------------
Q 000936 279 --KRTGVQTF-----R----------------REHDRFWILA------SHPEMNLLA----------------------- 306 (1219)
Q Consensus 279 --~~~~~~~~-----~----------------~~~~~i~~l~------~sp~~~~la----------------------- 306 (1219)
+++....+ . +..+++..+. .-|...-+.
T Consensus 446 V~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~ 525 (1012)
T KOG1445|consen 446 VPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPV 525 (1012)
T ss_pred cCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCc
Confidence 00000000 0 0000000000 000000000
Q ss_pred -----EEeCCC----------eeE------E----------------------EecCCcceEEecCCEEEEE---eCCeE
Q 000936 307 -----AGHDSG----------MIV------F----------------------KLERERPAFAVSGDSLFYA---KDRFL 340 (1219)
Q Consensus 307 -----~g~d~g----------i~v------~----------------------~l~~~~~~~s~~~~~l~~~---~d~~i 340 (1219)
.+..++ ..+ | .+..+..-|..+..++++- ..|.|
T Consensus 526 ~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~i 605 (1012)
T KOG1445|consen 526 NFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVI 605 (1012)
T ss_pred ccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceE
Confidence 000000 000 0 0000111233344455543 57899
Q ss_pred EEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCC-CEEEEEEeCCCCEEEEEEecCCCCCCCc----cccccccCce
Q 000936 341 RYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTE-NAVLICSDVDGGSYELYVIPKDSIGRGD----SVQDAKKGLG 415 (1219)
Q Consensus 341 ~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~llv~~~~~dg~i~l~~~~~~~~~~~~----~~~~~~~~~i 415 (1219)
-+|++...-.++--.+...-. ...|+.+.|.|-. ..+++++ ++|.|++|.+..+...+.. ..+..|...|
T Consensus 606 ai~el~~PGrLPDgv~p~l~N---gt~vtDl~WdPFD~~rLAVa~--ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI 680 (1012)
T KOG1445|consen 606 AIYELNEPGRLPDGVMPGLFN---GTLVTDLHWDPFDDERLAVAT--DDGQINLWRLTANGLPENEMTPEKILTIHGEKI 680 (1012)
T ss_pred EEEEcCCCCCCCccccccccc---CceeeecccCCCChHHeeecc--cCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence 999998743333222222221 1288999999944 4555543 5899999999876543322 3467888999
Q ss_pred eEEEEEeC-CeEEEEEcCCCEEEEEecC-CceeEeeeCCc-ceEEEEEeCCCcEEEE--eCCeEEEEEcCCCe-EEEEEe
Q 000936 416 GSAIFIAR-NRFAVLDKSSNQVLVKNLK-NEVVKKSILPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQRL-VLGDLQ 489 (1219)
Q Consensus 416 ~~~~fs~d-~~~l~~~~~dg~I~Iwdl~-~~~~~~i~~~~-~v~~l~~s~dg~~L~s--~d~~I~l~dl~~~~-~l~~~~ 489 (1219)
+++.|+|= ...|++++.|.+|++||+. ......+.+|. .|..++|||+|+.+++ .||+|++|...+++ .+.+-.
T Consensus 681 ~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~ 760 (1012)
T KOG1445|consen 681 TSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGK 760 (1012)
T ss_pred EEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCC
Confidence 99999986 4788888889999999999 55666777777 9999999999999966 59999999987764 444444
Q ss_pred c---CCeeEEEEcCCCCEEEEEeCC
Q 000936 490 T---PFVKYVVWSNDMESVALLSKH 511 (1219)
Q Consensus 490 ~---~~v~~v~ws~dg~~la~~s~~ 511 (1219)
+ ..--.|.|-.||+++++.+-+
T Consensus 761 gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 761 GPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred CCccCcceeEEEEecCcEEEEeccc
Confidence 3 445678999999988766543
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=2.4e-21 Score=197.31 Aligned_cols=290 Identities=18% Similarity=0.246 Sum_probs=220.3
Q ss_pred ccCCCEEEEEEeC-CCCEEEEEECCCeEEEEECCCCe----------EEE-----EecccCCCEEEEEEec-CCCEEEEE
Q 000936 7 TKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMGT----------LID-----RFDEHDGPVRGVHFHK-SQPLFVSG 69 (1219)
Q Consensus 7 ~h~~~V~~i~fsp-dg~~Lasg~~dg~I~iWd~~~g~----------~i~-----~l~~h~~~V~~l~fsp-~~~~Lasg 69 (1219)
-|.+.|.++...+ .|+++++|+.||.|.|||++.-. ... .-.+|.-.|..+.|-| |...|.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 5889999999988 68999999999999999997542 111 1136888899999999 55689999
Q ss_pred ECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCC---CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecC
Q 000936 70 GDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEY---PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146 (1219)
Q Consensus 70 s~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~---~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~ 146 (1219)
+.|.+++|||.++-+....|+ ..+.|.+-++||-. .++++|..|-.|++.|+.+|.+..++.||.+.|.++.|+|.
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 999999999999988887776 56788888998854 37888999999999999999999999999999999999998
Q ss_pred CC-EEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCC
Q 000936 147 ED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD 225 (1219)
Q Consensus 147 ~~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~d 225 (1219)
.. .|++|+.||.|++||++....- ...+...+. ........-..|.+.|+.++|..++.++++++.|
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgc-------f~~lD~hn~-----k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGC-------FRVLDQHNT-----KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccce-------eEEeecccC-----ccCccccccccccceeeeeeecccchhhhhccCc
Confidence 86 5678999999999999763110 000111110 0011112456799999999999999999999999
Q ss_pred CeEEEEECCCCCeeeEEeec-CCCCCeEEEEE---ccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCC
Q 000936 226 RQVKLWRMNETKAWEVDTLR-GHMNNVSCVMF---HAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1219)
Q Consensus 226 g~I~iwd~~~~~~~~~~~~~-~h~~~I~~l~~---sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~ 301 (1219)
..+++|++..+.......-+ .|... .+..+ +-+...++---.++.+.++++-.+..+..+..|..++.+.++-|+
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~-~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~ 346 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQT-TSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPD 346 (397)
T ss_pred cceEEeecccCccccccccccccccc-ccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCc
Confidence 99999999877642111100 11111 11111 233444544455688999999999999999999888999999998
Q ss_pred CCEEEEEeC
Q 000936 302 MNLLAAGHD 310 (1219)
Q Consensus 302 ~~~la~g~d 310 (1219)
-+...+|.-
T Consensus 347 fq~~~tg~~ 355 (397)
T KOG4283|consen 347 FEQCFTGDM 355 (397)
T ss_pred hhhhhcccc
Confidence 777777763
No 135
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=8.3e-21 Score=194.90 Aligned_cols=275 Identities=15% Similarity=0.232 Sum_probs=204.7
Q ss_pred cccCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCC-CeEE-EEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 000936 48 DEHDGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYKM-HRCL-FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124 (1219)
Q Consensus 48 ~~h~~~V~~l~fsp-~~~~Lasgs~Dg~I~vWd~~~-~~~~-~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s 124 (1219)
...++.|.+|+||| ...+++.|+-|++|++|+++. |..+ .....|.++|.+++|+.||..+++|+-|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 35677899999999 455677889999999999976 3333 23456899999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCeEEEEEecCCC--EEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEee
Q 000936 125 RTCISVLTGHNHYVMCASFHPKED--LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1219)
Q Consensus 125 ~~~i~~~~~h~~~V~~l~~sp~~~--~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1219)
++ +..+..|..+|.++.|-+... .|++||.|.+|+.||.+...... ++ .
T Consensus 104 ~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~---------------------------t~-~ 154 (347)
T KOG0647|consen 104 GQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA---------------------------TL-Q 154 (347)
T ss_pred CC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeee---------------------------ee-e
Confidence 95 556677999999999998765 89999999999999998643321 11 1
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC--
Q 000936 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR-- 280 (1219)
Q Consensus 203 ~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~-- 280 (1219)
-...+.++.. -.++++++..++.|.+|++.++............-.+.|++..++.+..+.|+-+|.+.|..+..+
T Consensus 155 LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 155 LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence 1233333333 235788999999999999977653211112223446889999999888899999999999998876
Q ss_pred eeEEEEecCCC---------CEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcce
Q 000936 281 TGVQTFRREHD---------RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDT 351 (1219)
Q Consensus 281 ~~~~~~~~~~~---------~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~ 351 (1219)
+.-.+|+.|.. .|.+++|+|....|++.+ .||.+.+||-.....
T Consensus 233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG--------------------------sDGtf~FWDkdar~k- 285 (347)
T KOG0647|consen 233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG--------------------------SDGTFSFWDKDARTK- 285 (347)
T ss_pred cCceeEEEeccCCCCCCceEEecceEeecccceEEEec--------------------------CCceEEEecchhhhh-
Confidence 44445555542 256788999777666654 366777888765433
Q ss_pred eeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeC
Q 000936 352 QVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDV 386 (1219)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~ 386 (1219)
+...+.. ..+|++.+|+.+|..++.+.+.
T Consensus 286 -Lk~s~~~-----~qpItcc~fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 286 -LKTSETH-----PQPITCCSFNRNGSIFAYALGY 314 (347)
T ss_pred -hhccCcC-----CCccceeEecCCCCEEEEEeec
Confidence 2222222 3399999999999988887763
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.1e-21 Score=206.60 Aligned_cols=283 Identities=15% Similarity=0.275 Sum_probs=228.8
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEECCC--CeEEEEecccCCCEEEEEEecCCC-EEEEEECCCeEEEEEcCCCeE
Q 000936 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRM--GTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRC 85 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~--g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~ 85 (1219)
.++|++|.|||..+.|++++.||+++||.+.. ...++.+.-...||.+.+|+|+|. .+++++.....+.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 36899999999999999999999999999753 345666666788999999999999 899999999999999988754
Q ss_pred E--EEEccCC-CCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEE
Q 000936 86 L--FTLLGHL-DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1219)
Q Consensus 86 ~--~~l~~h~-~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vw 162 (1219)
. ..+.++. ..+.....+|++++|+..+..|.|.+....+++.+.+++ -.+.|..+.|+.+++.|++++.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 3 3334444 367788899999999999999999999999999998888 46789999999999999999999999999
Q ss_pred ECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----CCe
Q 000936 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE----TKA 238 (1219)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~----~~~ 238 (1219)
|++...... +++-.| .-.-++++.++++.+|++|+..|.|.|||.++ ..+
T Consensus 372 nl~~~~~~~-------------------------rf~D~G-~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 372 NLRQNSCLH-------------------------RFVDDG-SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP 425 (514)
T ss_pred ecCCcceEE-------------------------EEeecC-ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC
Confidence 998853321 111111 12335678889999999999999999999653 233
Q ss_pred eeEEeecCCCCCeEEEEEccCCCEEEEEeC--CCcEEEEeCCCCeeEEEEecCC---CCEEEEEEeCCCCEEEEEeCCC-
Q 000936 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSE--DKSIRVWDVTKRTGVQTFRREH---DRFWILASHPEMNLLAAGHDSG- 312 (1219)
Q Consensus 239 ~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~--dg~I~iwdl~~~~~~~~~~~~~---~~i~~l~~sp~~~~la~g~d~g- 312 (1219)
.++..+..-...|+++.|+|++++|+.+|. ...+|+-.+.+.+....++..+ +.++|++|||.+.++|.|.+.|
T Consensus 426 kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 426 KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 346667777788999999999999988774 5679999998877777666554 4589999999999999998644
Q ss_pred eeEEEe
Q 000936 313 MIVFKL 318 (1219)
Q Consensus 313 i~v~~l 318 (1219)
+.+|++
T Consensus 506 v~l~kL 511 (514)
T KOG2055|consen 506 VHLFKL 511 (514)
T ss_pred eeeEee
Confidence 334443
No 137
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2e-19 Score=209.77 Aligned_cols=440 Identities=14% Similarity=0.221 Sum_probs=298.3
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCC---EEEEEECCCeEEEEEcCCCeEEEEEcc
Q 000936 15 LSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP---LFVSGGDDYKIKVWNYKMHRCLFTLLG 91 (1219)
Q Consensus 15 i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~---~Lasgs~Dg~I~vWd~~~~~~~~~l~~ 91 (1219)
-.||+|+++++... +..|.||...+|.++..+.+|..+++.+.+.|... ++.+++.||.|++||...+..+.++..
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 45899999888764 67899999999999999999999999999988654 678999999999999999999988874
Q ss_pred CCCCEEEEEEcCC---CCEEE-EEECCCeE-EEEECCCCeE-----EEE--------EecCCCCeEEEEEecCCCEEEEE
Q 000936 92 HLDYIRTVQFHHE---YPWIV-SASDDQTI-RIWNWQSRTC-----ISV--------LTGHNHYVMCASFHPKEDLVVSA 153 (1219)
Q Consensus 92 h~~~I~~l~fs~d---~~~l~-s~s~Dg~I-~iwd~~s~~~-----i~~--------~~~h~~~V~~l~~sp~~~~l~s~ 153 (1219)
+. ++..+.+.|. -+.++ .+..|..+ .-.....+.. +.+ +..|.. -.++.+++.|.+....
T Consensus 101 ~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~ 178 (792)
T KOG1963|consen 101 NL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIV 178 (792)
T ss_pred CC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEE
Confidence 43 3444444321 11122 11111111 1011111111 111 112222 3567788777655555
Q ss_pred ECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000936 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 233 (1219)
Q Consensus 154 s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~ 233 (1219)
. +..+.+|+........ .. ...-..|.-.+++.++||+++++++|..||+|.+|.-
T Consensus 179 ~-~~~~~~~~v~~~~~~~-~~----------------------~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d 234 (792)
T KOG1963|consen 179 H-MCKIHIYFVPKHTKHT-SS----------------------RDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRD 234 (792)
T ss_pred E-eeeEEEEEecccceee-cc----------------------chhhhhhcccceeEEeccccceEEEeccCCcEEEEec
Confidence 4 5678888887643111 00 1122345666899999999999999999999999975
Q ss_pred CC--CCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEE-eC
Q 000936 234 NE--TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG-HD 310 (1219)
Q Consensus 234 ~~--~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g-~d 310 (1219)
.. ........+..|...|.+++|+++|.+|++|+..|.+.+|.+.+++ .+-+++-..+|..+.+|||+.+.+.. .|
T Consensus 235 ~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 235 FGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred cccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecC
Confidence 54 3333467788899999999999999999999999999999999988 55667788999999999999987755 56
Q ss_pred CCeeEEEecCCc---------c--------------eEEec--CCEEEEE-eCCeEEEEEecCCcceeeEeecCCCCC--
Q 000936 311 SGMIVFKLERER---------P--------------AFAVS--GDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGST-- 362 (1219)
Q Consensus 311 ~gi~v~~l~~~~---------~--------------~~s~~--~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~-- 362 (1219)
+.+.+.+...-. + .++.+ .+.+++. ..+.|++||+.+...+..+.+-.....
T Consensus 314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~ 393 (792)
T KOG1963|consen 314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDG 393 (792)
T ss_pred ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCC
Confidence 667666552210 0 22233 3445555 899999999998766544333222110
Q ss_pred --CCCCCCeEEEEccCCCEEEEEEeC------CC--CEEEEEEecCCCCCCCcc--ccccccCceeEEEEEeCC--eEEE
Q 000936 363 --SLNQSPRTLSYSPTENAVLICSDV------DG--GSYELYVIPKDSIGRGDS--VQDAKKGLGGSAIFIARN--RFAV 428 (1219)
Q Consensus 363 --~~~~~i~~l~~spdg~~llv~~~~------~d--g~i~l~~~~~~~~~~~~~--~~~~~~~~i~~~~fs~d~--~~l~ 428 (1219)
.+...++.++.+-.|.+++..... .+ -.+++|..........+. ....|...+...+|.+.. ..++
T Consensus 394 ~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~v 473 (792)
T KOG1963|consen 394 DVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCV 473 (792)
T ss_pred cceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeE
Confidence 111256777777788776654322 12 356789887665433221 245677766667766443 2688
Q ss_pred EEcCCCEEEEEecCCc----------eeEeee-CCc-ceEEEEEeCCCcEEEEe-CCeEEEEEcCCC
Q 000936 429 LDKSSNQVLVKNLKNE----------VVKKSI-LPI-AADAIFYAGTGNLLCRA-EDRVVIFDLQQR 482 (1219)
Q Consensus 429 ~~~~dg~I~Iwdl~~~----------~~~~i~-~~~-~v~~l~~s~dg~~L~s~-d~~I~l~dl~~~ 482 (1219)
+++.||.++||-+.+. ..+.+. -+. +++..+|+.||.+|+.+ ++.|.+||..+.
T Consensus 474 ta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 474 TASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred EeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 8888999999998411 111111 122 89999999999999665 999999999883
No 138
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=3.9e-22 Score=208.84 Aligned_cols=286 Identities=16% Similarity=0.305 Sum_probs=231.0
Q ss_pred EEEEecccCCCEEEEEEecCC-CEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 000936 43 LIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1219)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd 121 (1219)
.+..+.+|...|.|++=+|.. ..+++|+.||.|++||+.+..++.++..|.+.|+.+++.. ..++++++|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 345678999999999999987 6899999999999999999999999999999999999988 5689999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEe
Q 000936 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1219)
Q Consensus 122 ~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1219)
+.. .++.++-+ .+.+..+.-+..++.++|++. .|.+||....... ..+.
T Consensus 136 ~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv---------------------------~sms 184 (433)
T KOG0268|consen 136 IDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPV---------------------------SSMS 184 (433)
T ss_pred ccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCcc---------------------------ceee
Confidence 765 36666654 345667777777788888874 6999998653322 2344
Q ss_pred ecCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000936 202 GHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1219)
Q Consensus 202 ~~~~~V~~l~~sp~g~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~ 280 (1219)
-....|.++.|+|... .|++++.|+.|.+||++...+.....+. ..-..++|+|.+-.++++++|..+..||++..
T Consensus 185 wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~---mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 185 WGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT---MRTNTICWNPEAFNFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred cCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee---ccccceecCccccceeeccccccceehhhhhh
Confidence 4567789999999764 6777779999999999998874333332 23456899998888999999999999999864
Q ss_pred -eeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCC
Q 000936 281 -TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRP 359 (1219)
Q Consensus 281 -~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~ 359 (1219)
.++..+..|.+.+..+.|||.|+-+++|+ .|++|++|....+....+.-.+..
T Consensus 262 ~~p~~v~~dhvsAV~dVdfsptG~Efvsgs--------------------------yDksIRIf~~~~~~SRdiYhtkRM 315 (433)
T KOG0268|consen 262 SRPLNVHKDHVSAVMDVDFSPTGQEFVSGS--------------------------YDKSIRIFPVNHGHSRDIYHTKRM 315 (433)
T ss_pred cccchhhcccceeEEEeccCCCcchhcccc--------------------------ccceEEEeecCCCcchhhhhHhhh
Confidence 45777888999999999999999999998 488999999888766554444432
Q ss_pred CCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecC
Q 000936 360 GSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1219)
Q Consensus 360 ~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~ 398 (1219)
. .|.++.||-|.+++ .+|++++.+++|....
T Consensus 316 q------~V~~Vk~S~Dskyi--~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 316 Q------HVFCVKYSMDSKYI--ISGSDDGNVRLWKAKA 346 (433)
T ss_pred h------eeeEEEEeccccEE--EecCCCcceeeeecch
Confidence 2 78999999999965 5577899999998654
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1e-21 Score=212.91 Aligned_cols=251 Identities=16% Similarity=0.323 Sum_probs=212.0
Q ss_pred EEEEEEC-CCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEE
Q 000936 23 WILASLH-SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF 101 (1219)
Q Consensus 23 ~Lasg~~-dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~f 101 (1219)
+++++.. ...|.+|.+..........--.++|.+++-+|.|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF 131 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence 4555533 346888988665444433346789999999999999999989999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECC---------CCeEEEEEecCCCCeEEEEEecCC--CEEEEEECCCeEEEEECCCCccc
Q 000936 102 HHEYPWIVSASDDQTIRIWNWQ---------SRTCISVLTGHNHYVMCASFHPKE--DLVVSASLDQTVRVWDIGALRKK 170 (1219)
Q Consensus 102 s~d~~~l~s~s~Dg~I~iwd~~---------s~~~i~~~~~h~~~V~~l~~sp~~--~~l~s~s~dg~I~vwd~~~~~~~ 170 (1219)
+.|+.+|+|||.||.|.+|.+. +-++.+.+..|.-+|+.+...+.| .+++|+|.|.++++||+..+...
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 9999999999999999999763 346788899999999999988764 68999999999999999875432
Q ss_pred cccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-------------
Q 000936 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK------------- 237 (1219)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~------------- 237 (1219)
.-......+.+++.+|.+..+.+|+.+|.|.+.++....
T Consensus 212 ----------------------------lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 212 ----------------------------LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred ----------------------------EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc
Confidence 223356789999999999999999999999988775433
Q ss_pred -eeeEEeecCCCC--CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCC
Q 000936 238 -AWEVDTLRGHMN--NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1219)
Q Consensus 238 -~~~~~~~~~h~~--~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~ 301 (1219)
...+..+.||.+ +|+|++++-||.+|++|+.||.++|||+.+.++++++....++|+.+.+.|-
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 123566788988 9999999999999999999999999999999999888777788888888664
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=4.9e-23 Score=232.75 Aligned_cols=239 Identities=24% Similarity=0.465 Sum_probs=219.3
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1219)
+++..|+..|.|+..-..++.+++|+.+-.+-+|.+..-..+..+.+|+++|.++.|+++..+|+.|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 46678999999999977889999999999999999887777788999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEE
Q 000936 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1219)
Q Consensus 83 ~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vw 162 (1219)
.+.++++.+|...+.++.|+|-+.+.++|+.|+.+++||.+...|...+.+|...|.++.|+|+|.++++++.|.++++|
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~ 181 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIW 181 (825)
T ss_pred hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeee
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred ECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEE
Q 000936 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 242 (1219)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~ 242 (1219)
|...++.. ..+.+|.+.+..+.|+|..-++++|+.|+++++||+.+-.. +.
T Consensus 182 d~~agk~~---------------------------~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~--I~ 232 (825)
T KOG0267|consen 182 DLTAGKLS---------------------------KEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV--IS 232 (825)
T ss_pred cccccccc---------------------------cccccccccccccccCchhhhhccCCCCceeeeeccceeEE--ee
Confidence 99875543 25678999999999999999999999999999999997765 66
Q ss_pred eecCCCCCeEEEEEccCCCEEEEEeCCC
Q 000936 243 TLRGHMNNVSCVMFHAKQDIIVSNSEDK 270 (1219)
Q Consensus 243 ~~~~h~~~I~~l~~sp~g~~L~s~s~dg 270 (1219)
........|.+..|+|++..+.+|....
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchhh
Confidence 6666788899999999999888886553
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=6.3e-23 Score=231.89 Aligned_cols=259 Identities=24% Similarity=0.490 Sum_probs=231.5
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEE
Q 000936 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100 (1219)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~ 100 (1219)
+.+++.+...-.+++||.+ .+..|...|.++..-..++.+++|+.|-.+-+|.+..-..+..+.+|..+|.++.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence 3444555556667788854 3446888899998877888999999999999999987777888999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccee
Q 000936 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180 (1219)
Q Consensus 101 fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~ 180 (1219)
|+++..+|+.|+.+|+|++||+..++.++++.+|...+.++.|+|-+.+.++|+.|+.+.+||++...
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G------------ 145 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG------------ 145 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999997522
Q ss_pred eccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCC
Q 000936 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ 260 (1219)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g 260 (1219)
+.+...+|...|..+.|+|+|+++++|++|..+++||...++. ...+.+|.+.+..+.|+|..
T Consensus 146 ---------------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~--~~ef~~~e~~v~sle~hp~e 208 (825)
T KOG0267|consen 146 ---------------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL--SKEFKSHEGKVQSLEFHPLE 208 (825)
T ss_pred ---------------ceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccc--ccccccccccccccccCchh
Confidence 4456778999999999999999999999999999999999987 88899999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCee
Q 000936 261 DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI 314 (1219)
Q Consensus 261 ~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~ 314 (1219)
-++++|+.|+++++||+++.+.+.........|.+.+|+|++..+.+|....+.
T Consensus 209 ~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 209 VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 999999999999999999988888887788899999999999999998765544
No 142
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.4e-21 Score=208.81 Aligned_cols=237 Identities=19% Similarity=0.308 Sum_probs=201.8
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcC-------
Q 000936 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK------- 81 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~------- 81 (1219)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|.++..+..|-.+|+|+.|+.||.+|+|||.||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred --CCeEEEEEccCCCCEEEEEEcCCC--CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCC
Q 000936 82 --MHRCLFTLLGHLDYIRTVQFHHEY--PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (1219)
Q Consensus 82 --~~~~~~~l~~h~~~I~~l~fs~d~--~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg 157 (1219)
+-++++.+..|.-+|+.+...+.+ .+++|+|.|.++++||+..|..+.++. ....+++++..|.+..+.+|+.+|
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcc
Confidence 346788899999999999887764 499999999999999999999988887 467799999999999999999999
Q ss_pred eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCC--CeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000936 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR--GVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (1219)
Q Consensus 158 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~ 235 (1219)
.|.+.++.+....... + ..-....+......+.||.. .|+|++++-||.+|++|+.||.|++||+.+
T Consensus 240 ~I~~~~~~~~~~~~~~-------v----~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAG-------V----NQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred eEEeeehhcCCccccc-------c----cccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 9999988664311100 0 00011123334557788888 999999999999999999999999999999
Q ss_pred CCeeeEEeecCCCCCeEEEEEccC
Q 000936 236 TKAWEVDTLRGHMNNVSCVMFHAK 259 (1219)
Q Consensus 236 ~~~~~~~~~~~h~~~I~~l~~sp~ 259 (1219)
.++ ++++....++|+.+.+.|-
T Consensus 309 ~Q~--iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 309 KQC--IRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred HHH--HHHHhhhccccceeEeecc
Confidence 887 6666667788999988664
No 143
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=8.7e-21 Score=205.78 Aligned_cols=234 Identities=23% Similarity=0.427 Sum_probs=191.1
Q ss_pred ccCCCEEEEEEecCCC-EEEEEECCCeEEEEEcCCC----------eEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCe
Q 000936 49 EHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMH----------RCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQT 116 (1219)
Q Consensus 49 ~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~----------~~~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~ 116 (1219)
.|.+.|..+..-|+.+ ++++.+..+.|.|||+..- ++-.++.+|.+.-.+++|++... .+++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 5889999999999776 5566778899999998532 22237889999888899999766 8999999999
Q ss_pred EEEEECCCCe-------EEEEEecCCCCeEEEEEecCC-CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccc
Q 000936 117 IRIWNWQSRT-------CISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDL 188 (1219)
Q Consensus 117 I~iwd~~s~~-------~i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1219)
|++||++... ....+.+|...|..++|++.. +++.+++.|+.+.+||+++....
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~------------------ 263 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK------------------ 263 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC------------------
Confidence 9999997432 345778999999999999965 78899999999999999973111
Q ss_pred cccccceEEEEEeecCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccC-CCEEEEE
Q 000936 189 FGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-QDIIVSN 266 (1219)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~-g~~L~s~ 266 (1219)
......+|.+.|+|++|+| ++..||+|+.|++|.+||+++... ++.++.+|...|.++.|+|+ ...|+++
T Consensus 264 -------~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 264 -------PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred -------CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCCceeEec
Confidence 2235678999999999999 456889999999999999998765 58899999999999999995 5688999
Q ss_pred eCCCcEEEEeCCCCe--------------eEEEEecCCCCEEEEEEeCCCCEEEEE
Q 000936 267 SEDKSIRVWDVTKRT--------------GVQTFRREHDRFWILASHPEMNLLAAG 308 (1219)
Q Consensus 267 s~dg~I~iwdl~~~~--------------~~~~~~~~~~~i~~l~~sp~~~~la~g 308 (1219)
+.|+.+.|||+..-. .+....+|...|..+.|+|+...+++.
T Consensus 336 g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~S 391 (422)
T KOG0264|consen 336 GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIAS 391 (422)
T ss_pred ccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEE
Confidence 999999999987522 234455677888889999987765543
No 144
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=6.7e-22 Score=225.49 Aligned_cols=240 Identities=22% Similarity=0.440 Sum_probs=198.9
Q ss_pred EEEEEEeC-CCCEEEEEECCCeEEEEECCC---CeEEEEecccCCCEEEEEEecCCC-EEEEEECCCeEEEEEcCCCeEE
Q 000936 12 VKGLSFHS-KRPWILASLHSGVIQLWDYRM---GTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCL 86 (1219)
Q Consensus 12 V~~i~fsp-dg~~Lasg~~dg~I~iWd~~~---g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~~ 86 (1219)
+..+.|+. +.++||+++.+|.|.+||+.. .+++..|..|+..|.+++||+..+ +|++|+.||+|++||++..+-.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 44566764 568999999999999999976 566778899999999999999655 7899999999999999999999
Q ss_pred EEEccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEECCC-CeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEEC
Q 000936 87 FTLLGHLDYIRTVQFHHE-YPWIVSASDDQTIRIWNWQS-RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (1219)
Q Consensus 87 ~~l~~h~~~I~~l~fs~d-~~~l~s~s~Dg~I~iwd~~s-~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~ 164 (1219)
.++.+....|+.+.|+|. +..++++.+.|.+++||++. .++...+..|.++|.|+.|+|++.+|+||+.|++|+|||.
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM 249 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence 999999999999999995 45899999999999999984 4567788999999999999999999999999999999999
Q ss_pred CCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCE-EEEEe--CCCeEEEEECCCCCeeeE
Q 000936 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL-IVSGA--DDRQVKLWRMNETKAWEV 241 (1219)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~-l~sg~--~dg~I~iwd~~~~~~~~~ 241 (1219)
.+.+... + .......+|..+.|-|..++ |++++ .|-.|+|||++..-. +.
T Consensus 250 t~~~~~~-------------------------~-~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI-P~ 302 (839)
T KOG0269|consen 250 TDSRAKP-------------------------K-HTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI-PY 302 (839)
T ss_pred cCCCccc-------------------------e-eEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc-cc
Confidence 8755432 1 11223568999999997754 55554 477899999987654 57
Q ss_pred EeecCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC
Q 000936 242 DTLRGHMNNVSCVMFHA-KQDIIVSNSEDKSIRVWDVT 278 (1219)
Q Consensus 242 ~~~~~h~~~I~~l~~sp-~g~~L~s~s~dg~I~iwdl~ 278 (1219)
.++..|...++.++|.. |...+.+++.||+|..-.++
T Consensus 303 ~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 303 ATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred eeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 88899999999999965 45567788888876544433
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.6e-20 Score=208.10 Aligned_cols=276 Identities=17% Similarity=0.344 Sum_probs=216.4
Q ss_pred eecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCC--EEEEEECCC--------
Q 000936 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP--LFVSGGDDY-------- 73 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~--~Lasgs~Dg-------- 73 (1219)
-+.||++.|.||+.+|.|.||++|+.||+|+||.+.+|.++.++. ..+.|+||+|+|.+. .||++-...
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 468999999999999999999999999999999999999999985 567899999999765 454443322
Q ss_pred ------------------------eEEEEEcCC---C-eEEEEEccCCCCEEEEEEcCCCCEEEEEECC---CeEEEEEC
Q 000936 74 ------------------------KIKVWNYKM---H-RCLFTLLGHLDYIRTVQFHHEYPWIVSASDD---QTIRIWNW 122 (1219)
Q Consensus 74 ------------------------~I~vWd~~~---~-~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~D---g~I~iwd~ 122 (1219)
.+..|.-.. + +-+...-.|...|+.+.||..|.||++...+ ..|.|.++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 223333210 0 1122334588899999999999999987664 57899999
Q ss_pred CCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEee
Q 000936 123 QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1219)
Q Consensus 123 ~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1219)
..+.....++...+.|.++.|+|...++++++ ...|++||+....... .+..
T Consensus 554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvK---------------------------kL~t 605 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVK---------------------------KLLT 605 (733)
T ss_pred ccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHH---------------------------HHhc
Confidence 87777777766778899999999999999888 4789999997744322 2233
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC----
Q 000936 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT---- 278 (1219)
Q Consensus 203 ~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~---- 278 (1219)
....|.+++.||.|.-|+.|+.|+.+..+|+.-... +..+++-|...+++++||+.-.++++|+.||++.|+.-.
T Consensus 606 g~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk-Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D 684 (733)
T KOG0650|consen 606 GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK-PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND 684 (733)
T ss_pred CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc-hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh
Confidence 456788999999999999999999999999986543 377889999999999999999999999999999998522
Q ss_pred --CC---eeEEEEecCCCC----EEEEEEeCCCCEEEEEe
Q 000936 279 --KR---TGVQTFRREHDR----FWILASHPEMNLLAAGH 309 (1219)
Q Consensus 279 --~~---~~~~~~~~~~~~----i~~l~~sp~~~~la~g~ 309 (1219)
.. -++..+++|... |....|||...+|.+++
T Consensus 685 l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAG 724 (733)
T KOG0650|consen 685 LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAG 724 (733)
T ss_pred hhcCCceEeeeeccCceeecccceEeecccCCCceEEecC
Confidence 11 234455555544 78888999988776654
No 146
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=6.4e-18 Score=201.24 Aligned_cols=374 Identities=24% Similarity=0.457 Sum_probs=286.4
Q ss_pred eecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCe-EEEEecccC-CCEEEEEE-ecCCC-EEEEEEC-CCeEEEE
Q 000936 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT-LIDRFDEHD-GPVRGVHF-HKSQP-LFVSGGD-DYKIKVW 78 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~-~i~~l~~h~-~~V~~l~f-sp~~~-~Lasgs~-Dg~I~vW 78 (1219)
.+.+|...|.++.|++.+..++.++.++.+.+|+...+. .+..+..+. ..+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456899999999999999999999999999999998886 677776644 37888888 88887 5555455 8999999
Q ss_pred EcCC-CeEEEEEccCCCCEEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCC-EEEEEEC
Q 000936 79 NYKM-HRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVVSASL 155 (1219)
Q Consensus 79 d~~~-~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~-Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~-~l~s~s~ 155 (1219)
+... ......+..|...|..+.|+|++..+++++. |+.+++|+..++..+..+.+|...|.++.|+|++. .+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 9988 7888889999999999999999998888885 99999999999889999999999999999999998 5555599
Q ss_pred CCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000936 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (1219)
Q Consensus 156 dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~ 235 (1219)
|+.|++||....... ...+.+|.... ...|+|++..+++++.|+.+++|+...
T Consensus 220 d~~i~~wd~~~~~~~--------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 220 DGTIRLWDLSTGKLL--------------------------RSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred CCcEEEEECCCCcEE--------------------------eeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecC
Confidence 999999987632221 11456666665 448999998899999999999999987
Q ss_pred CCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEe--cCCCCEEEEEEeCCCCEEEEEeCCCe
Q 000936 236 TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR--REHDRFWILASHPEMNLLAAGHDSGM 313 (1219)
Q Consensus 236 ~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~--~~~~~i~~l~~sp~~~~la~g~d~gi 313 (1219)
... ......+|...+.++.|+|++..+++++.|+.+.+|+..+........ .+...+..+.+.+++..+..+..
T Consensus 273 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 348 (466)
T COG2319 273 SSS-LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS--- 348 (466)
T ss_pred CCc-EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeec---
Confidence 664 123336788999999999988989889999999999998887666655 55556888888323234444421
Q ss_pred eEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEE
Q 000936 314 IVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYEL 393 (1219)
Q Consensus 314 ~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l 393 (1219)
.++.+.+|+..... ....... ...+..+.+++ . .........++.+.+
T Consensus 349 ----------------------~d~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 396 (466)
T COG2319 349 ----------------------DDGTIRLWDLRTGK--PLKTLEG------HSNVLSVSFSP-D-GRVVSSGSTDGTVRL 396 (466)
T ss_pred ----------------------CCCcEEeeecCCCc--eeEEecC------CceEEEEEECC-C-CCEEEEecCCCceEE
Confidence 24556667777655 1121111 11367788888 6 444443556789999
Q ss_pred EEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCC
Q 000936 394 YVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN 443 (1219)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~ 443 (1219)
|+......... ...+...+....+++++..++.+..++.+.+|+...
T Consensus 397 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 397 WDLSTGSLLRN---LDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EecccCeeeee---ccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 99876543211 111115677888888888888888789999998876
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=2e-20 Score=209.10 Aligned_cols=291 Identities=16% Similarity=0.251 Sum_probs=217.7
Q ss_pred EEEeC---CCCEEEEEECCCeEEEEECCCCeE------EEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeE
Q 000936 15 LSFHS---KRPWILASLHSGVIQLWDYRMGTL------IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC 85 (1219)
Q Consensus 15 i~fsp---dg~~Lasg~~dg~I~iWd~~~g~~------i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~ 85 (1219)
..|++ ....|+.+..+|.|.++|.+.... +..+..|.+.|..+.|-|....|++++.|.++++||+++.++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 56665 456889999999999999764422 244557999999999999777999999999999999999998
Q ss_pred EEE--EccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCe---------------------------EEEEEecCC
Q 000936 86 LFT--LLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRT---------------------------CISVLTGHN 135 (1219)
Q Consensus 86 ~~~--l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~---------------------------~i~~~~~h~ 135 (1219)
+.. +.||.+.|.+++|++.++ .|++|+.||.|.|||+.-.. .+.....|.
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 887 899999999999999877 78899999999999986321 111112344
Q ss_pred CCeEE---EEEecCCCEEEEEEC-CCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEE
Q 000936 136 HYVMC---ASFHPKEDLVVSASL-DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211 (1219)
Q Consensus 136 ~~V~~---l~~sp~~~~l~s~s~-dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 211 (1219)
..|.+ +.+..|...|++++. |+.|+|||++................ . .......++.++.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~--------------~--t~skrs~G~~nL~ 278 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKY--------------P--THSKRSVGQVNLI 278 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCc--------------c--CcccceeeeEEEE
Confidence 44444 555668889999988 99999999998654332111000000 0 0012245678888
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCe--EEEEEccCCCEEEEEeCCCcEEEEeCCCCee-EEEEec
Q 000936 212 FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNV--SCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG-VQTFRR 288 (1219)
Q Consensus 212 ~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I--~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~-~~~~~~ 288 (1219)
....|.++.+.+.|+.|++|++.+....++..+.++...- ..-..+|++.++++|+.|....+|.+.+.+. ...+.+
T Consensus 279 lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G 358 (720)
T KOG0321|consen 279 LDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG 358 (720)
T ss_pred ecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhC
Confidence 8888999988888999999999987765566665554321 1235689999999999999999999987654 445667
Q ss_pred CCCCEEEEEEeC--CCCEEEEEeCCCeeEEEecCC
Q 000936 289 EHDRFWILASHP--EMNLLAAGHDSGMIVFKLERE 321 (1219)
Q Consensus 289 ~~~~i~~l~~sp--~~~~la~g~d~gi~v~~l~~~ 321 (1219)
|.-.+++++|.| ....+++..|.++.+|.+...
T Consensus 359 ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 359 HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 888899999987 455666767788889988543
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=3.8e-19 Score=202.66 Aligned_cols=270 Identities=12% Similarity=0.109 Sum_probs=199.7
Q ss_pred ceecccCCCEEEEEEeCCCCEE-EEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEE-ECCCeEEEEEc
Q 000936 3 TKFETKSNRVKGLSFHSKRPWI-LASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-GDDYKIKVWNY 80 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~L-asg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasg-s~Dg~I~vWd~ 80 (1219)
..+.+|. .+.+++|+|+++.+ ++++.++.|++||..+++.+..+..+.. +..++|+|+++.++++ +.++.|++||+
T Consensus 25 ~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 25 RTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDI 102 (300)
T ss_pred EEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 4555554 47889999999977 5667789999999999988887765544 4688999999977554 56899999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCC-eEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEE-ECCCe
Q 000936 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ-TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA-SLDQT 158 (1219)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg-~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~ 158 (1219)
.+++.+..+.. ...+.+++|+|++.++++++.++ .+.+||..+++....... ...+.++.|+|+++.++++ ..++.
T Consensus 103 ~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~ 180 (300)
T TIGR03866 103 ETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGT 180 (300)
T ss_pred CCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCE
Confidence 99888877753 34568899999999999888765 567789988877665543 3345789999999987554 46899
Q ss_pred EEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCC
Q 000936 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVS-GADDRQVKLWRMNETK 237 (1219)
Q Consensus 159 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s-g~~dg~I~iwd~~~~~ 237 (1219)
|++||+.+.+....... . . . ...........++|+|+++.+++ .+.++.+.+||..+.+
T Consensus 181 v~i~d~~~~~~~~~~~~------~--~-----------~-~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 181 VSVIDVATRKVIKKITF------E--I-----------P-GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred EEEEEcCcceeeeeeee------c--c-----------c-ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 99999987543221000 0 0 0 00000112346889999998554 4556789999998877
Q ss_pred eeeEEeecCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeC
Q 000936 238 AWEVDTLRGHMNNVSCVMFHAKQDIIVSN-SEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (1219)
Q Consensus 238 ~~~~~~~~~h~~~I~~l~~sp~g~~L~s~-s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp 300 (1219)
. +..+ .+...+.++.|+|+|++|+++ +.+|.|++||+.+++.+..++.. ...+.++++|
T Consensus 241 ~--~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 241 V--LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred E--EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 5 3332 244578999999999999886 46899999999999999988754 5568888765
No 149
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=9.7e-20 Score=187.55 Aligned_cols=280 Identities=10% Similarity=0.196 Sum_probs=212.1
Q ss_pred EEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEcc
Q 000936 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91 (1219)
Q Consensus 12 V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~ 91 (1219)
..|+.||+-|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++||++|+.|+|++.|..|++||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999998888899999999999999999999999999999999999999998887
Q ss_pred CCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEec----CCCCeEEEEEecCCCEEEEEECCCeEEEEECCC
Q 000936 92 HLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTG----HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA 166 (1219)
Q Consensus 92 h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~~----h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~ 166 (1219)
...+|+...|+|-.. ..++.-.+..-.+-++..++...--.. .+..-.+..|.+.|+++++|...|.+.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 678999999999654 333333333344445443222111110 111123346899999999999999999999988
Q ss_pred CccccccCCccceeeccccccccccccceEEEEEeec-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-------
Q 000936 167 LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA------- 238 (1219)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~------- 238 (1219)
.+... .+.-. ...|..+.++..|+.|+.-+.|+.|+.|++..-..
T Consensus 185 ~e~va---------------------------s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~ 237 (405)
T KOG1273|consen 185 LECVA---------------------------SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEV 237 (405)
T ss_pred heeee---------------------------eeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCc
Confidence 65432 12222 36788899999999999999999999999863211
Q ss_pred eeEEeecC--CCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeeEEEEecCC-CCEEEEEEeCCCCEEEEEeCCCee
Q 000936 239 WEVDTLRG--HMNNVSCVMFHAKQDIIVSNSE-DKSIRVWDVTKRTGVQTFRREH-DRFWILASHPEMNLLAAGHDSGMI 314 (1219)
Q Consensus 239 ~~~~~~~~--h~~~I~~l~~sp~g~~L~s~s~-dg~I~iwdl~~~~~~~~~~~~~-~~i~~l~~sp~~~~la~g~d~gi~ 314 (1219)
.+.+.+.. ....-.+++|+.+|.+++.++. ...++||....|..+..+.+.. .....+.|+|-...+++-..+.+.
T Consensus 238 e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~ 317 (405)
T KOG1273|consen 238 EPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVY 317 (405)
T ss_pred ChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceE
Confidence 00111111 1122357899999999988764 4569999999999999998877 557789999988888877655566
Q ss_pred EEEec
Q 000936 315 VFKLE 319 (1219)
Q Consensus 315 v~~l~ 319 (1219)
+|...
T Consensus 318 iw~~~ 322 (405)
T KOG1273|consen 318 IWAVV 322 (405)
T ss_pred EEEee
Confidence 66543
No 150
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.2e-19 Score=187.54 Aligned_cols=270 Identities=17% Similarity=0.220 Sum_probs=210.8
Q ss_pred cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 000936 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (1219)
Q Consensus 50 h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~ 129 (1219)
....|+++.|+|.+..|++++.||++++|++........+. |..++.+++|.++. .+++|+.||.|+.+|+.+++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc-eEEEeccCceEEEEEecCCccee
Confidence 46779999999999999999999999999998775555555 89999999999864 69999999999999999887644
Q ss_pred EEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEE
Q 000936 130 VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW 209 (1219)
Q Consensus 130 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 209 (1219)
+..|...|.|+.+++..+.+++||.|++|++||.+...... .+ .....|.+
T Consensus 90 -igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~---------------------------~~-d~~kkVy~ 140 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG---------------------------TF-DQGKKVYC 140 (323)
T ss_pred -eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc---------------------------cc-ccCceEEE
Confidence 45599999999999988999999999999999998622111 11 12235666
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----eeEEE
Q 000936 210 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR----TGVQT 285 (1219)
Q Consensus 210 l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~----~~~~~ 285 (1219)
+.. .|+.|++|+.+..|.+||+++........-....-.+.|+++-|++.=.+++|-||.|.+=.+... ..-..
T Consensus 141 ~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya 218 (323)
T KOG1036|consen 141 MDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA 218 (323)
T ss_pred Eec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence 655 457899999999999999998765322223445567899999998888999999999988766655 22334
Q ss_pred EecCCC---------CEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEee
Q 000936 286 FRREHD---------RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPI 356 (1219)
Q Consensus 286 ~~~~~~---------~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 356 (1219)
|+.|.. +|.+++|||-...+++|.. ||.|.+||..+.+.+. .+
T Consensus 219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs--------------------------DG~V~~Wd~~~rKrl~--q~ 270 (323)
T KOG1036|consen 219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS--------------------------DGIVNIWDLFNRKRLK--QL 270 (323)
T ss_pred EEeeecccCCceEEEEeceeEeccccceEEecCC--------------------------CceEEEccCcchhhhh--hc
Confidence 544432 4788999999888998874 6677899998876633 33
Q ss_pred cCCCCCCCCCCCeEEEEccCCCEEEEEEe
Q 000936 357 RRPGSTSLNQSPRTLSYSPTENAVLICSD 385 (1219)
Q Consensus 357 ~~~~~~~~~~~i~~l~~spdg~~llv~~~ 385 (1219)
.+.. ..|.+++|+.+|..+++++.
T Consensus 271 ~~~~-----~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 271 AKYE-----TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cCCC-----CceEEEEeccCCCeEEEEec
Confidence 3322 27999999999999988766
No 151
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=5.3e-21 Score=218.23 Aligned_cols=261 Identities=20% Similarity=0.354 Sum_probs=209.6
Q ss_pred EEEEEEeCCCCEEEEEECCCeEEEEECCCC----eEEEEeccc---CCCEEEEEEec-CCCEEEEEECCCeEEEEEcCC-
Q 000936 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMG----TLIDRFDEH---DGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYKM- 82 (1219)
Q Consensus 12 V~~i~fspdg~~Lasg~~dg~I~iWd~~~g----~~i~~l~~h---~~~V~~l~fsp-~~~~Lasgs~Dg~I~vWd~~~- 82 (1219)
...|+.+++...|++++. ..+.||.+... .+...+... .-.+..+.|+. +.++|+|++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 566777898888888864 45777776532 222222211 12345677874 567999999999999999986
Q ss_pred --CeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecC-CCEEEEEECCCe
Q 000936 83 --HRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK-EDLVVSASLDQT 158 (1219)
Q Consensus 83 --~~~~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~ 158 (1219)
.+.+..+..|...+.++.||+..+ +|++||.||+|++||++..+...++.+....|..+.|+|. ++.++++...|.
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~ 200 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY 200 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCce
Confidence 566778899999999999999766 8899999999999999999999999988999999999995 478999999999
Q ss_pred EEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 000936 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1219)
Q Consensus 159 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~ 238 (1219)
+++||++..+. +...+..|.++|.++.|||++.+|++|+.|++|+||++.+.+.
T Consensus 201 lqlWDlRqp~r--------------------------~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 201 LQLWDLRQPDR--------------------------CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred EEEeeccCchh--------------------------HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence 99999987543 2335778999999999999999999999999999999998776
Q ss_pred eeEEeecCCCCCeEEEEEccCCC-EEEEEe--CCCcEEEEeCCCC-eeEEEEecCCCCEEEEEEeC
Q 000936 239 WEVDTLRGHMNNVSCVMFHAKQD-IIVSNS--EDKSIRVWDVTKR-TGVQTFRREHDRFWILASHP 300 (1219)
Q Consensus 239 ~~~~~~~~h~~~I~~l~~sp~g~-~L~s~s--~dg~I~iwdl~~~-~~~~~~~~~~~~i~~l~~sp 300 (1219)
.+..++. ...+|.++.|-|... +|++++ .|-.|+|||++.. -+..++..|.+.++.++|..
T Consensus 255 ~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 255 KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 5555544 457899999999765 455554 4678999999754 44667888888899999876
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=3.4e-20 Score=200.28 Aligned_cols=289 Identities=20% Similarity=0.313 Sum_probs=224.4
Q ss_pred ceecccCCCEEEEEEeCCC--CEEEEEECCCeEEEEECCCC----eEEEEecccCCCEEEEEEecCC-CEEEEEECCCeE
Q 000936 3 TKFETKSNRVKGLSFHSKR--PWILASLHSGVIQLWDYRMG----TLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKI 75 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg--~~Lasg~~dg~I~iWd~~~g----~~i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~I 75 (1219)
....-|..+|++++|||.. +.+|+|...|.|-+||+.+. .-+..+..|.++|.+|.|+|.. ..+++.+.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 3456788999999999954 58889999999999999532 3456678899999999999954 488999999999
Q ss_pred EEEEcCCCe--EEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-EEEEecCCCCeEEEEEecCC-CEEE
Q 000936 76 KVWNYKMHR--CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC-ISVLTGHNHYVMCASFHPKE-DLVV 151 (1219)
Q Consensus 76 ~vWd~~~~~--~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~-i~~~~~h~~~V~~l~~sp~~-~~l~ 151 (1219)
+.-|++++. .+.++......+..+.|+.+...++.+..=|...+||.+++.. ...+.-|...|.+++++|-. .+++
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 999998653 3333333455778899999998888888888999999987654 66777899999999999976 5899
Q ss_pred EEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 000936 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (1219)
Q Consensus 152 s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iw 231 (1219)
|+|.|+++++||++....+.. .......|...|+++.|||++-.|++.+.|..|+||
T Consensus 340 T~s~D~T~kIWD~R~l~~K~s-----------------------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKAS-----------------------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVF 396 (498)
T ss_pred ecccCcceeeeehhhhcCCCC-----------------------cceecccccceeeeeEEcCCCCceEeeccCCceEEe
Confidence 999999999999998665432 122455799999999999998889999999999999
Q ss_pred ECC---CCCeeeEEeecCCCC----C--eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC-CEEE-EEEeC
Q 000936 232 RMN---ETKAWEVDTLRGHMN----N--VSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD-RFWI-LASHP 300 (1219)
Q Consensus 232 d~~---~~~~~~~~~~~~h~~----~--I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~-~i~~-l~~sp 300 (1219)
|.. .... +..++. |.. . .....|.|+..++++|-.-..|-|+|-..++.+..+..... .|.+ ..|||
T Consensus 397 dss~~sa~~~-p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP 474 (498)
T KOG4328|consen 397 DSSCISAKDE-PLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHP 474 (498)
T ss_pred ecccccccCC-ccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecc
Confidence 984 1111 122221 221 1 33568999999999999989999999888887777654443 3444 57999
Q ss_pred CCCEEEEEeCCCeeEE
Q 000936 301 EMNLLAAGHDSGMIVF 316 (1219)
Q Consensus 301 ~~~~la~g~d~gi~v~ 316 (1219)
-+..+++|+..+..+|
T Consensus 475 ~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 475 MRDTLAAGGNSSGKIY 490 (498)
T ss_pred cccceeccCCccceEE
Confidence 9987777765544444
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.9e-19 Score=185.41 Aligned_cols=249 Identities=17% Similarity=0.318 Sum_probs=195.9
Q ss_pred cccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCC----eEEEEecccCCCEEEEEEec--CCCEEEEEECCCeEEEEE
Q 000936 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG----TLIDRFDEHDGPVRGVHFHK--SQPLFVSGGDDYKIKVWN 79 (1219)
Q Consensus 6 ~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g----~~i~~l~~h~~~V~~l~fsp--~~~~Lasgs~Dg~I~vWd 79 (1219)
.+|.+-|+|+.|.+.|+++|+++.|++|.|||.... .+....+.|++.|..+.|-+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 479999999999999999999999999999996533 45567789999999999954 588999999999999997
Q ss_pred cC---------CCeEEEEEccCCCCEEEEEEcCC--CCEEEEEECCCeEEEEECCCCe------EEEEEe-------cCC
Q 000936 80 YK---------MHRCLFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRIWNWQSRT------CISVLT-------GHN 135 (1219)
Q Consensus 80 ~~---------~~~~~~~l~~h~~~I~~l~fs~d--~~~l~s~s~Dg~I~iwd~~s~~------~i~~~~-------~h~ 135 (1219)
-. ......++......|+.+.|.|. |-.+++++.||++|||+....- ....+. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 41 12345567777889999999996 4589999999999999765322 222222 456
Q ss_pred CCeEEEEEecCC---CEEEEEECC-----CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCe
Q 000936 136 HYVMCASFHPKE---DLVVSASLD-----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207 (1219)
Q Consensus 136 ~~V~~l~~sp~~---~~l~s~s~d-----g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 207 (1219)
.+..|+.|+|.. .+|++|+.+ +.+.+|.......+- ...-.+.+|..+|
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw-----------------------~kva~L~d~~dpI 226 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW-----------------------LKVAELPDHTDPI 226 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee-----------------------eeehhcCCCCCcc
Confidence 678899999754 678888865 478888765533111 1122466899999
Q ss_pred EEEEEcCCC----CEEEEEeCCCeEEEEECCCCC------------------eeeEEeecCCCCCeEEEEEccCCCEEEE
Q 000936 208 NWAAFHPTL----PLIVSGADDRQVKLWRMNETK------------------AWEVDTLRGHMNNVSCVMFHAKQDIIVS 265 (1219)
Q Consensus 208 ~~l~~sp~g----~~l~sg~~dg~I~iwd~~~~~------------------~~~~~~~~~h~~~I~~l~~sp~g~~L~s 265 (1219)
+.++|.|+- ..|++++.|| |+||.+.... ...+..+.+|.+.|..+.|+-.|..|.+
T Consensus 227 ~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS 305 (361)
T KOG2445|consen 227 RDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS 305 (361)
T ss_pred eeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee
Confidence 999999963 4799999999 9999987311 1224557889999999999999999999
Q ss_pred EeCCCcEEEEeCC
Q 000936 266 NSEDKSIRVWDVT 278 (1219)
Q Consensus 266 ~s~dg~I~iwdl~ 278 (1219)
.+.||.||+|...
T Consensus 306 tGdDG~VRLWkan 318 (361)
T KOG2445|consen 306 TGDDGCVRLWKAN 318 (361)
T ss_pred cCCCceeeehhhh
Confidence 9999999999754
No 154
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1e-19 Score=187.31 Aligned_cols=285 Identities=14% Similarity=0.280 Sum_probs=211.3
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec
Q 000936 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG 133 (1219)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~ 133 (1219)
-.|+.|++.|.+||+|+.||.|.|||+.|...-..+.+|..+|++++||++|+.|+++|.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6899999999999999999999999999999888999999999999999999999999999999999999999998887
Q ss_pred CCCCeEEEEEecCCC-EEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEE
Q 000936 134 HNHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAF 212 (1219)
Q Consensus 134 h~~~V~~l~~sp~~~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 212 (1219)
.+++|+.+.|+|... ..++.-.+..-.+-++....... .+.. .++. ....-.+..|
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~-Lp~d---------------~d~d-------ln~sas~~~f 161 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV-LPKD---------------DDGD-------LNSSASHGVF 161 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee-ccCC---------------Cccc-------cccccccccc
Confidence 678999999999763 34433334445555554422111 1100 0000 0111122368
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCC-CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee------E--
Q 000936 213 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM-NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG------V-- 283 (1219)
Q Consensus 213 sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~-~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~------~-- 283 (1219)
++.|+++++|...|.+.+++..+.++ +..++-.. ..|..+.++..|+.|+..+.|..||.|+++.-.. +
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e~--vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~ 239 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLEC--VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEP 239 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchhee--eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcCh
Confidence 89999999999999999999999887 66666555 7899999999999999999999999999763111 0
Q ss_pred -EEEec--CCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCC
Q 000936 284 -QTFRR--EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360 (1219)
Q Consensus 284 -~~~~~--~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 360 (1219)
+.++. ..-.-.+++||.+|.++.+|+. ....+++|.-..|..+.++.-.+ |
T Consensus 240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~-------------------------~aHaLYIWE~~~GsLVKILhG~k-g 293 (405)
T KOG1273|consen 240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSA-------------------------RAHALYIWEKSIGSLVKILHGTK-G 293 (405)
T ss_pred hHHHHHHHhhhhhhheeecCCccEEEeccc-------------------------cceeEEEEecCCcceeeeecCCc-h
Confidence 11110 1122346888999999988874 35567788888887765543322 1
Q ss_pred CCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecC
Q 000936 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1219)
Q Consensus 361 ~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~ 398 (1219)
.....+.|+|-...++.. ..|.+.+|....
T Consensus 294 -----E~l~DV~whp~rp~i~si---~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 294 -----EELLDVNWHPVRPIIASI---ASGVVYIWAVVQ 323 (405)
T ss_pred -----hheeecccccceeeeeec---cCCceEEEEeec
Confidence 145567888876655444 448999998653
No 155
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.7e-19 Score=206.41 Aligned_cols=265 Identities=16% Similarity=0.246 Sum_probs=212.3
Q ss_pred ccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC-eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 000936 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH-RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC 127 (1219)
Q Consensus 49 ~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~-~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~ 127 (1219)
.|...-+.|+|.|+|.++++++.||.|++|+..+. ....++..+...|.+++.. +.+|++++.+++|.+|.+.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc
Confidence 68888999999999999999999999999987654 3334444467777777654 44899999999999999998887
Q ss_pred EEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCe
Q 000936 128 ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207 (1219)
Q Consensus 128 i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 207 (1219)
-..+....-++.+++|+.+|++++.||.|-.|++-+..... ....+.+|+.+|
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s---------------------------~~~~lrgh~apV 141 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS---------------------------QEKVLRGHDAPV 141 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc---------------------------hheeecccCCce
Confidence 66666667889999999999999999999999999986633 344789999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCC--------CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000936 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH--------MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1219)
Q Consensus 208 ~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h--------~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~ 279 (1219)
.++.|+|++++|++.+.||.|++|++.++.. ..++.+- ...+..++|+|+|..++....|+.|++|+..+
T Consensus 142 l~l~~~p~~~fLAvss~dG~v~iw~~~~~~~--~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL--SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred eeeeEcCCCCEEEEEecCceEEEEEcccchh--hhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 9999999999999999999999999998765 3333221 34467899999988888888999999999999
Q ss_pred CeeEEEEec--CCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeec
Q 000936 280 RTGVQTFRR--EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIR 357 (1219)
Q Consensus 280 ~~~~~~~~~--~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~ 357 (1219)
+.....++. +...+..+.|+|+|.+||++. .++.|.+||..+-.. +
T Consensus 220 we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~--------------------------~~g~I~vWnv~t~~~------~ 267 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDLQWSPNGKYIAAST--------------------------LDGQILVWNVDTHER------H 267 (933)
T ss_pred ceeheeecccccccceEEEEEcCCCcEEeeec--------------------------cCCcEEEEecccchh------c
Confidence 888777664 334589999999999999987 356667777765111 1
Q ss_pred CCCCCCCCCCCeEEEEccCCCEEE
Q 000936 358 RPGSTSLNQSPRTLSYSPTENAVL 381 (1219)
Q Consensus 358 ~~~~~~~~~~i~~l~~spdg~~ll 381 (1219)
.. ...|.+++|.|+.+.+-
T Consensus 268 ~~-----~~~Vc~~aw~p~~n~it 286 (933)
T KOG1274|consen 268 EF-----KRAVCCEAWKPNANAIT 286 (933)
T ss_pred cc-----cceeEEEecCCCCCeeE
Confidence 11 22777777777776543
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3e-19 Score=198.14 Aligned_cols=295 Identities=20% Similarity=0.326 Sum_probs=221.8
Q ss_pred EEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCC--EEEEEECCCeEEEEE
Q 000936 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP--WIVSASDDQTIRIWN 121 (1219)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~--~l~s~s~Dg~I~iwd 121 (1219)
-..+.+|++.|++|..+|.|.+|++|++||+|+||.+.+|+|+.++. -.+.|+|++|+|.+. .|+++-.+ .+.|-+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEeC
Confidence 34567999999999999999999999999999999999999999987 456899999999876 44443332 233333
Q ss_pred CCCC-------------------------------------eEEEEEecCCCCeEEEEEecCCCEEEEEECC---CeEEE
Q 000936 122 WQSR-------------------------------------TCISVLTGHNHYVMCASFHPKEDLVVSASLD---QTVRV 161 (1219)
Q Consensus 122 ~~s~-------------------------------------~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~I~v 161 (1219)
..-| .-++..-.|...|..+.||..|++|++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 2111 1123334588899999999999999987654 46888
Q ss_pred EECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeE
Q 000936 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (1219)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~ 241 (1219)
+++...+... .+....+.|.++.|||...+|++++. ..|++||+..... +
T Consensus 551 HQLSK~~sQ~---------------------------PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel--v 600 (733)
T KOG0650|consen 551 HQLSKRKSQS---------------------------PFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL--V 600 (733)
T ss_pred EecccccccC---------------------------chhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHH--H
Confidence 8887644321 33445677899999999999988875 6799999988665 6
Q ss_pred EeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-eeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCe-eEEEec
Q 000936 242 DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR-TGVQTFRREHDRFWILASHPEMNLLAAGHDSGM-IVFKLE 319 (1219)
Q Consensus 242 ~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~-~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi-~v~~l~ 319 (1219)
..+......|+.++.||.|..|+.++.|+.+..+|+.-. ++.++++.|...++.+++|+.-.++++|++++. +||.
T Consensus 601 KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh-- 678 (733)
T KOG0650|consen 601 KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH-- 678 (733)
T ss_pred HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe--
Confidence 667777788999999999999999999999999999754 567788889999999999999999999998553 3331
Q ss_pred CCcceEEecCCEEEEEeCCeEEEEE--ecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEE
Q 000936 320 RERPAFAVSGDSLFYAKDRFLRYYE--FSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1219)
Q Consensus 320 ~~~~~~s~~~~~l~~~~d~~i~v~d--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~ 395 (1219)
+. +|+ +.+...+++..++.+.... ...|....|+|...+++.+++ ||++++|.
T Consensus 679 ------------------g~--VY~Dl~qnpliVPlK~L~gH~~~~-~~gVLd~~wHP~qpWLfsAGA--d~tirlfT 733 (733)
T KOG0650|consen 679 ------------------GM--VYNDLLQNPLIVPLKRLRGHEKTN-DLGVLDTIWHPRQPWLFSAGA--DGTIRLFT 733 (733)
T ss_pred ------------------ee--eehhhhcCCceEeeeeccCceeec-ccceEeecccCCCceEEecCC--CceEEeeC
Confidence 11 221 1223334444444433311 235777889999998877655 78999983
No 157
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=2.6e-20 Score=201.91 Aligned_cols=238 Identities=16% Similarity=0.245 Sum_probs=206.7
Q ss_pred cCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE--EEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeE
Q 000936 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI--DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC 85 (1219)
Q Consensus 8 h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i--~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~ 85 (1219)
...-|.++.++|||+.|++|+.-.++.|||+...+.. ..+....-...+++.+||.+..+++..||.|.|||+.+...
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 4567899999999999999999999999999765433 33433345578899999999999999999999999999999
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECC
Q 000936 86 LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (1219)
Q Consensus 86 ~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~ 165 (1219)
++.|.||.+.+.||..++||..|-+|+-|.+||.||++++..+.... ..+.|.++..+|+++++++|-.++.+.|....
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC
Confidence 99999999999999999999999999999999999999887765544 45789999999999999999999998888765
Q ss_pred CCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeec
Q 000936 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR 245 (1219)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~ 245 (1219)
..+ ++.+.-|.+.|.++.|.+.|+++++.+.|..+..|.+.-+.. +....
T Consensus 623 kp~----------------------------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas--iFqsk 672 (705)
T KOG0639|consen 623 KPE----------------------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IFQSK 672 (705)
T ss_pred Ccc----------------------------ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccc--eeecc
Confidence 532 456778999999999999999999999999999999887764 44433
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 000936 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (1219)
Q Consensus 246 ~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl 277 (1219)
..++|.++.+|.|.++|++|+.|+...||.+
T Consensus 673 -E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 -ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4578999999999999999999998888864
No 158
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=2e-19 Score=189.74 Aligned_cols=244 Identities=25% Similarity=0.422 Sum_probs=190.8
Q ss_pred ccCCCEEEEEEecC--CCEEEEEECCCeEEEEEcC----------------CCeEEEEEccCCCCEEEEEEcCCCC-EEE
Q 000936 49 EHDGPVRGVHFHKS--QPLFVSGGDDYKIKVWNYK----------------MHRCLFTLLGHLDYIRTVQFHHEYP-WIV 109 (1219)
Q Consensus 49 ~h~~~V~~l~fsp~--~~~Lasgs~Dg~I~vWd~~----------------~~~~~~~l~~h~~~I~~l~fs~d~~-~l~ 109 (1219)
.|.+.+..+.-++- ..+.++-+..|.|.||++. ..++++++.+|...=..++|||-.. .++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 57777777776664 4577788899999999973 2367889999999999999999332 588
Q ss_pred EEECCCeEEEEECCCCeEE---EEEecCCCCeEEEEEecCC-CEEEEEECCCeEEEEECCCCccccccCCccceeecccc
Q 000936 110 SASDDQTIRIWNWQSRTCI---SVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185 (1219)
Q Consensus 110 s~s~Dg~I~iwd~~s~~~i---~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 185 (1219)
+|.--+.|++|...+|.-. ..+.+|+..|-.++|+|.. ..|++||.||+|+|||++...++.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~-------------- 294 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA-------------- 294 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--------------
Confidence 8887889999998876532 3466899999999999976 689999999999999999865432
Q ss_pred ccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eeEEeecCCCCCeEEEEEccC-CCEE
Q 000936 186 TDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAK-QDII 263 (1219)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~h~~~I~~l~~sp~-g~~L 263 (1219)
......|.+.|+.+.|+...++|++|++||+++|||++.-+. .++..+..|..+|+++.|+|. ...|
T Consensus 295 -----------~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 295 -----------AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred -----------eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceE
Confidence 123478999999999999999999999999999999986543 247789999999999999995 4678
Q ss_pred EEEeCCCcEEEEeCCCCee----------------EEEEec--CCCCEEEEEEeCCCC-EEEEEeCCCeeEEE
Q 000936 264 VSNSEDKSIRVWDVTKRTG----------------VQTFRR--EHDRFWILASHPEMN-LLAAGHDSGMIVFK 317 (1219)
Q Consensus 264 ~s~s~dg~I~iwdl~~~~~----------------~~~~~~--~~~~i~~l~~sp~~~-~la~g~d~gi~v~~ 317 (1219)
++++.|..|.+||+.-..- .+.+-. ....+..+.|+++.. ++++..-+|+-||+
T Consensus 364 aasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 364 AASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred EeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 8899999999999863221 111112 234567788998654 55556667777775
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=4e-19 Score=192.02 Aligned_cols=300 Identities=17% Similarity=0.292 Sum_probs=219.0
Q ss_pred CCCeEEEEecccCCCEEEEEEecCCC--EEEEEECCCeEEEEEcCC----CeEEEEEccCCCCEEEEEEcCCCC-EEEEE
Q 000936 39 RMGTLIDRFDEHDGPVRGVHFHKSQP--LFVSGGDDYKIKVWNYKM----HRCLFTLLGHLDYIRTVQFHHEYP-WIVSA 111 (1219)
Q Consensus 39 ~~g~~i~~l~~h~~~V~~l~fsp~~~--~Lasgs~Dg~I~vWd~~~----~~~~~~l~~h~~~I~~l~fs~d~~-~l~s~ 111 (1219)
.+-......+.|.++|++++|||..+ ++++|..-|+|-+||+.+ ...+..+..|+.+|.++.|+|.+. .+++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 33444556667899999999999654 788888899999999952 234667788999999999999765 89999
Q ss_pred ECCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeecccccccc
Q 000936 112 SDDQTIRIWNWQSRTCISVLT--GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLF 189 (1219)
Q Consensus 112 s~Dg~I~iwd~~s~~~i~~~~--~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (1219)
|.||+|+.-|++++..-..+. .....+.++.|+.+...++.+..=|...+||.++.....
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~------------------ 315 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY------------------ 315 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc------------------
Confidence 999999999998765433333 345567788888888888888888899999998855421
Q ss_pred ccccceEEEEEeecCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCee--eEEeecCCCCCeEEEEEccCCCEEEEE
Q 000936 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAW--EVDTLRGHMNNVSCVMFHAKQDIIVSN 266 (1219)
Q Consensus 190 ~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sg~~dg~I~iwd~~~~~~~--~~~~~~~h~~~I~~l~~sp~g~~L~s~ 266 (1219)
..+.-|...|++++++|-.+ +|++++.|++.+|||++.-... +......|...|.++.|||.+..|++.
T Consensus 316 --------~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT 387 (498)
T KOG4328|consen 316 --------ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTT 387 (498)
T ss_pred --------hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEee
Confidence 24556888999999999765 6899999999999999864321 234556799999999999988889999
Q ss_pred eCCCcEEEEeCC----CCeeEEEEecCCC-----CEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeC
Q 000936 267 SEDKSIRVWDVT----KRTGVQTFRREHD-----RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKD 337 (1219)
Q Consensus 267 s~dg~I~iwdl~----~~~~~~~~~~~~~-----~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d 337 (1219)
+.|..|+|||.. ...+..++..... ......|.|+.+++++|.- -
T Consensus 388 ~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~--------------------------~ 441 (498)
T KOG4328|consen 388 CQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY--------------------------P 441 (498)
T ss_pred ccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEecc--------------------------C
Confidence 999999999983 3444444442221 1234679999888888863 3
Q ss_pred CeEEEEEecCCcceeeEeecCCCCCCCCCCCeE-EEEccCCCEEEEEEeCCCCEEEEEEec
Q 000936 338 RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRT-LSYSPTENAVLICSDVDGGSYELYVIP 397 (1219)
Q Consensus 338 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~spdg~~llv~~~~~dg~i~l~~~~ 397 (1219)
+.|-++|-..++.+ ..+..... ..|.+ ..|+|-+..++. +++..|.|.+|.-.
T Consensus 442 r~IDv~~~~~~q~v--~el~~P~~----~tI~~vn~~HP~~~~~~a-G~~s~Gki~vft~k 495 (498)
T KOG4328|consen 442 RPIDVFDGNGGQMV--CELHDPES----STIPSVNEFHPMRDTLAA-GGNSSGKIYVFTNK 495 (498)
T ss_pred cceeEEcCCCCEEe--eeccCccc----cccccceeecccccceec-cCCccceEEEEecC
Confidence 44667777766642 22222111 13333 489998775544 44466777777643
No 160
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.5e-17 Score=194.10 Aligned_cols=454 Identities=15% Similarity=0.234 Sum_probs=293.7
Q ss_pred cceecccCCCEEEEEEeCCCC---EEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEec---CCCEEE-EEECCCe
Q 000936 2 LTKFETKSNRVKGLSFHSKRP---WILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK---SQPLFV-SGGDDYK 74 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspdg~---~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp---~~~~La-sgs~Dg~ 74 (1219)
++.|++|..+++.+.+.|... ++.+.+.+|.|++||...+.+++++..+ .+|..+.+.| +.+.++ .+..|..
T Consensus 50 i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~ 128 (792)
T KOG1963|consen 50 ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYS 128 (792)
T ss_pred hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecC-CceeEEEechhHhCccceeEeecccce
Confidence 457899999999999988554 6778899999999999999999999643 4455555533 111222 2222222
Q ss_pred EEE-EEcCCCeEE-----EEE--------ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE----EecCCC
Q 000936 75 IKV-WNYKMHRCL-----FTL--------LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV----LTGHNH 136 (1219)
Q Consensus 75 I~v-Wd~~~~~~~-----~~l--------~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~----~~~h~~ 136 (1219)
+.. ...+..+.. .++ ..|.. -.++.+++.+.+....- +..+.+|+..++..... -..|.-
T Consensus 129 ~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf 206 (792)
T KOG1963|consen 129 ILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTF 206 (792)
T ss_pred eeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcc
Confidence 111 111111111 111 12222 35678888887655554 56799999887541111 124666
Q ss_pred CeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCC
Q 000936 137 YVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL 216 (1219)
Q Consensus 137 ~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g 216 (1219)
.++|.++||+++++++|..||.|.+|.--.... +......+.-|...|++++|+++|
T Consensus 207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----------------------~~~t~t~lHWH~~~V~~L~fS~~G 263 (792)
T KOG1963|consen 207 NITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----------------------DSETCTLLHWHHDEVNSLSFSSDG 263 (792)
T ss_pred cceeEEeccccceEEEeccCCcEEEEecccccc-----------------------ccccceEEEecccccceeEEecCC
Confidence 789999999999999999999999997533111 111233566789999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEec--------
Q 000936 217 PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR-------- 288 (1219)
Q Consensus 217 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~-------- 288 (1219)
.+|++|+..|.+.+|.+.+++ ..-++.-.++|..+.++||+.+.+...+|+.|.+....+.....++.+
T Consensus 264 ~~LlSGG~E~VLv~Wq~~T~~---kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~ 340 (792)
T KOG1963|consen 264 AYLLSGGREGVLVLWQLETGK---KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPST 340 (792)
T ss_pred ceEeecccceEEEEEeecCCC---cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccc
Confidence 999999999999999999988 345666778999999999999999999999999998766544333221
Q ss_pred ---CCCCEEEEEEeCC-CCEEEEEeCCCeeEEEecCCcc-------------------------eEEecCCEEEEE----
Q 000936 289 ---EHDRFWILASHPE-MNLLAAGHDSGMIVFKLERERP-------------------------AFAVSGDSLFYA---- 335 (1219)
Q Consensus 289 ---~~~~i~~l~~sp~-~~~la~g~d~gi~v~~l~~~~~-------------------------~~s~~~~~l~~~---- 335 (1219)
..+-.+.++++|. +..+..|..+.+..|++-+... ..+..|+.+.+.
T Consensus 341 k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~ 420 (792)
T KOG1963|consen 341 KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARI 420 (792)
T ss_pred cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeee
Confidence 1334677889994 4455566677777777655433 122234555443
Q ss_pred -----e--CCeEEEEEecCCcceeeEeec-CCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCC------
Q 000936 336 -----K--DRFLRYYEFSTQKDTQVIPIR-RPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI------ 401 (1219)
Q Consensus 336 -----~--d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~------ 401 (1219)
. ...+++|-.......-.+..+ ..+| .......++.+..+....++.+.||.+++|.+.+...
T Consensus 421 d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH---~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s 497 (792)
T KOG1963|consen 421 DKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPH---GNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSS 497 (792)
T ss_pred hhhhccCceEEEEEEEEcCCcceeEEEEEEecCC---CceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCcc
Confidence 1 345678877764432222211 1222 1133344443333331222333678999999954322
Q ss_pred -CCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCC-ceeEeeeCCc--ceEEEEEeC----CCcEEEEeCCe
Q 000936 402 -GRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN-EVVKKSILPI--AADAIFYAG----TGNLLCRAEDR 473 (1219)
Q Consensus 402 -~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~-~~~~~i~~~~--~v~~l~~s~----dg~~L~s~d~~ 473 (1219)
..+.....-|..++++++|+.||..++.+. +++|.|||... ..+....... ++..+.+.. ++.+.......
T Consensus 498 ~W~c~~i~sy~k~~i~a~~fs~dGslla~s~-~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (792)
T KOG1963|consen 498 NWTCKAIGSYHKTPITALCFSQDGSLLAVSF-DDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQR 576 (792)
T ss_pred ceEEeeeeccccCcccchhhcCCCcEEEEec-CCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCce
Confidence 222212224677899999999999988888 89999999985 3322222211 444444333 45666667899
Q ss_pred EEEEEcCCCeEEEEE
Q 000936 474 VVIFDLQQRLVLGDL 488 (1219)
Q Consensus 474 I~l~dl~~~~~l~~~ 488 (1219)
+.+|++-+..+...+
T Consensus 577 l~~WNll~~~l~w~~ 591 (792)
T KOG1963|consen 577 LSVWNLLSMSLIWNL 591 (792)
T ss_pred EehHhhhhhheecch
Confidence 999999888776643
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=1e-18 Score=181.38 Aligned_cols=303 Identities=18% Similarity=0.358 Sum_probs=218.2
Q ss_pred ecccCCCEEEEEEeC----CC-CEEEEEECCCeEEEEECCCCe---EEEEe--cccCCCEEEEEEecC----CCEEEEEE
Q 000936 5 FETKSNRVKGLSFHS----KR-PWILASLHSGVIQLWDYRMGT---LIDRF--DEHDGPVRGVHFHKS----QPLFVSGG 70 (1219)
Q Consensus 5 l~~h~~~V~~i~fsp----dg-~~Lasg~~dg~I~iWd~~~g~---~i~~l--~~h~~~V~~l~fsp~----~~~Lasgs 70 (1219)
.+.|..+|.+++|++ +. ..+++++ ...+.+|...... .+++. ..|+.....++|+-+ .+++|.||
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 467889999999985 22 4555554 5568899876433 33433 247888889999753 56899999
Q ss_pred CCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEecC
Q 000936 71 DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVL---TGHNHYVMCASFHPK 146 (1219)
Q Consensus 71 ~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~---~~h~~~V~~l~~sp~ 146 (1219)
.-|.|+|.|+.++++...+.+|...|..+.|+|+.+ +++++|.|.+|++||+++..|+..+ .+|...|.++.|+++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 999999999999999999999999999999999875 8899999999999999999999988 479999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCccccccCCccceeecccc-cccccccc-ceEEE-EEeecCCCeEEEEEcCCCCEEEEEe
Q 000936 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN-TDLFGGVD-AVVKY-VLEGHDRGVNWAAFHPTLPLIVSGA 223 (1219)
Q Consensus 147 ~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~V~~l~~sp~g~~l~sg~ 223 (1219)
|+++++++.|.++.+|++...+........ +...... ...+.... ....+ +..-|...|-|+.|-. +++++-+
T Consensus 193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s--~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSks 268 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRLNVKEFKNKLELS--ITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKS 268 (385)
T ss_pred CCeeeccCCcceEEEEecChhHHhhhhhhh--cccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeecc
Confidence 999999999999999999864433211110 0000000 00000000 00011 3445778888888875 6899999
Q ss_pred CCCeEEEEECCC-CCe-----------eeEEeecCCCCCeEEEE--EccCCCEEEEEeCCCcEEEEeCCCCeeEE--EE-
Q 000936 224 DDRQVKLWRMNE-TKA-----------WEVDTLRGHMNNVSCVM--FHAKQDIIVSNSEDKSIRVWDVTKRTGVQ--TF- 286 (1219)
Q Consensus 224 ~dg~I~iwd~~~-~~~-----------~~~~~~~~h~~~I~~l~--~sp~g~~L~s~s~dg~I~iwdl~~~~~~~--~~- 286 (1219)
-++.|..|.... .+. .....+.-....|+-+. |.|-++.|+.|...|.|.+||++...+.. ++
T Consensus 269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~ 348 (385)
T KOG1034|consen 269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT 348 (385)
T ss_pred cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE
Confidence 999999998721 111 01222333334455554 45778999999999999999998766521 12
Q ss_pred -ecCCCCEEEEEEeCCCCEEEEEeCCC
Q 000936 287 -RREHDRFWILASHPEMNLLAAGHDSG 312 (1219)
Q Consensus 287 -~~~~~~i~~l~~sp~~~~la~g~d~g 312 (1219)
......|...+|+.|+.+|+...+++
T Consensus 349 ~s~~~~tVRQ~sfS~dgs~lv~vcdd~ 375 (385)
T KOG1034|consen 349 HSKSGSTVRQTSFSRDGSILVLVCDDG 375 (385)
T ss_pred eccccceeeeeeecccCcEEEEEeCCC
Confidence 22345688899999998887776544
No 162
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=4.8e-19 Score=186.87 Aligned_cols=246 Identities=21% Similarity=0.339 Sum_probs=189.5
Q ss_pred ecccCCCEEEEEEeCCC--CEEEEEECCCeEEEEECCC----------------CeEEEEecccCCCEEEEEEecC-CCE
Q 000936 5 FETKSNRVKGLSFHSKR--PWILASLHSGVIQLWDYRM----------------GTLIDRFDEHDGPVRGVHFHKS-QPL 65 (1219)
Q Consensus 5 l~~h~~~V~~i~fspdg--~~Lasg~~dg~I~iWd~~~----------------g~~i~~l~~h~~~V~~l~fsp~-~~~ 65 (1219)
.-.|.+.|+.+.-++-+ .+.++-+..|.|+||++.. .+.+.++.+|.+.=.+++|||- ...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34577777777777644 5566667889999999742 2567788899999999999993 225
Q ss_pred EEEEECCCeEEEEEcCCCeEEE---EEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCC---eEEEEEecCCCCe
Q 000936 66 FVSGGDDYKIKVWNYKMHRCLF---TLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSR---TCISVLTGHNHYV 138 (1219)
Q Consensus 66 Lasgs~Dg~I~vWd~~~~~~~~---~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~---~~i~~~~~h~~~V 138 (1219)
|+||.--+.|++|...++.... .+.+|+..|..++|||... .|+|||-||+|+|||++++ .++.+ +.|.+.|
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDV 305 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDV 305 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCce
Confidence 8888777899999998876443 4567999999999999754 8999999999999999987 34444 7899999
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCC-C
Q 000936 139 MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-P 217 (1219)
Q Consensus 139 ~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~ 217 (1219)
+.+.|+....+|++|+.||+++|||++..+... +.-.+.-|..+|+++.|+|.. .
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~------------------------pVA~fk~Hk~pItsieW~p~e~s 361 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ------------------------PVATFKYHKAPITSIEWHPHEDS 361 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCC------------------------cceeEEeccCCeeEEEeccccCc
Confidence 999999888899999999999999999855431 344678899999999999854 5
Q ss_pred EEEEEeCCCeEEEEECCCCCe--------------eeEEeecCC--CCCeEEEEEccC-CCEEEEEeCCCcEEEEe
Q 000936 218 LIVSGADDRQVKLWRMNETKA--------------WEVDTLRGH--MNNVSCVMFHAK-QDIIVSNSEDKSIRVWD 276 (1219)
Q Consensus 218 ~l~sg~~dg~I~iwd~~~~~~--------------~~~~~~~~h--~~~I~~l~~sp~-g~~L~s~s~dg~I~iwd 276 (1219)
.|++++.|.+|.+||+....- .+...+--| ...+..+.|++. ..++++.+.|| +.||.
T Consensus 362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 362 VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 788889999999999864321 001111223 334677888875 35778888887 55553
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=2.8e-16 Score=187.09 Aligned_cols=369 Identities=23% Similarity=0.408 Sum_probs=278.6
Q ss_pred EecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe-EEEEEccCCC-CEEEEEE-cCCCC-EEEEEEC-CCeEEEE
Q 000936 46 RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR-CLFTLLGHLD-YIRTVQF-HHEYP-WIVSASD-DQTIRIW 120 (1219)
Q Consensus 46 ~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~-~~~~l~~h~~-~I~~l~f-s~d~~-~l~s~s~-Dg~I~iw 120 (1219)
.+..|...+.++.|++.+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456799999999999999999999999999999998876 6777776443 7787777 88887 5555455 9999999
Q ss_pred ECCC-CeEEEEEecCCCCeEEEEEecCCCEEEEEEC-CCeEEEEECCCCccccccCCccceeeccccccccccccceEEE
Q 000936 121 NWQS-RTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1219)
Q Consensus 121 d~~s-~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1219)
+... ......+..|...|..+.|+|++..+++++. |+.+++|+..... ...
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~ 192 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK---------------------------PLS 192 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc---------------------------eEE
Confidence 9988 7888899999999999999999998888885 9999999998622 233
Q ss_pred EEeecCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeEE-eecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 000936 199 VLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVD-TLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (1219)
Q Consensus 199 ~~~~~~~~V~~l~~sp~g~-~l~sg~~dg~I~iwd~~~~~~~~~~-~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwd 276 (1219)
.+.+|...|.+++|+|++. .+++++.|+.|++||...+.. .. .+.+|.... ...|+|++.++++++.|+.+++|+
T Consensus 193 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~ 269 (466)
T COG2319 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL--LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWD 269 (466)
T ss_pred eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE--EeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEee
Confidence 5566999999999999998 555559999999998886654 44 578888775 448999998999999999999999
Q ss_pred CCCCee-EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEe
Q 000936 277 VTKRTG-VQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (1219)
Q Consensus 277 l~~~~~-~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~ 355 (1219)
...... +..+..|...+.++.++|++..++++.. ++.+.+|+..+........
T Consensus 270 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------------------------d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS--------------------------DGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred ecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC--------------------------CCcEEEEEcCCCceEEEee
Confidence 987665 4444566788999999998887777653 3456777776655433333
Q ss_pred ecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEE-EcCCC
Q 000936 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVL-DKSSN 434 (1219)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~-~~~dg 434 (1219)
...+ ...+..+.|++++..+.... ..++.+.+|+..... .. ........+..+.+.+ ...... +..++
T Consensus 324 --~~~~---~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 392 (466)
T COG2319 324 --LKGH---EGPVSSLSFSPDGSLLVSGG-SDDGTIRLWDLRTGK--PL--KTLEGHSNVLSVSFSP-DGRVVSSGSTDG 392 (466)
T ss_pred --eccc---CCceEEEEECCCCCEEEEee-cCCCcEEeeecCCCc--ee--EEecCCceEEEEEECC-CCCEEEEecCCC
Confidence 1122 22578888843324554443 344788889887654 11 1111111267788887 533333 57789
Q ss_pred EEEEEecC-CceeEeeeCC-cceEEEEEeCCCcEEEE--eCCeEEEEEcCC
Q 000936 435 QVLVKNLK-NEVVKKSILP-IAADAIFYAGTGNLLCR--AEDRVVIFDLQQ 481 (1219)
Q Consensus 435 ~I~Iwdl~-~~~~~~i~~~-~~v~~l~~s~dg~~L~s--~d~~I~l~dl~~ 481 (1219)
.+.+|+.. .......... ..+....+++++..++. .++.+.+|+..+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 99999999 4455555555 68899999999998876 478999999987
No 164
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=3.5e-18 Score=189.78 Aligned_cols=212 Identities=17% Similarity=0.252 Sum_probs=152.8
Q ss_pred EEEEecccCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCCeE--E----EEEccCCCCEEEEEEcCCCCEEEEEECCC
Q 000936 43 LIDRFDEHDGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYKMHRC--L----FTLLGHLDYIRTVQFHHEYPWIVSASDDQ 115 (1219)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp-~~~~Lasgs~Dg~I~vWd~~~~~~--~----~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg 115 (1219)
.+..+.+|...|+.+.|+| +..+|++|+.|..|+||.+..+-. + ..+.+..-.|.++.|||...-|+..+..|
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 4556678999999999999 455899999999999999874321 1 12223334788999999877666667789
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccce
Q 000936 116 TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1219)
Q Consensus 116 ~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1219)
+++|||+.+++.+..+.+|...|.++.|+.||.++++++.|..|+|||.+..-.
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~-------------------------- 204 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASME-------------------------- 204 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCC--------------------------
Confidence 999999999999999999999999999999999999999999999999876322
Q ss_pred EEEEEeecCCC-eEEEEEcCCCCEEEEEeCC----CeEEEEECCCCCeeeEEeecC-CCCCeEEEEEccCCCEEEEE-eC
Q 000936 196 VKYVLEGHDRG-VNWAAFHPTLPLIVSGADD----RQVKLWRMNETKAWEVDTLRG-HMNNVSCVMFHAKQDIIVSN-SE 268 (1219)
Q Consensus 196 ~~~~~~~~~~~-V~~l~~sp~g~~l~sg~~d----g~I~iwd~~~~~~~~~~~~~~-h~~~I~~l~~sp~g~~L~s~-s~ 268 (1219)
.....++|.+. =..+.|..+-..|++.+.+ +.|++||.+.-... +.++.- ....|.--.|.||.++|+.+ -.
T Consensus 205 piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p-~~tleld~stGvLiPl~DpDt~llfLaGKG 283 (1012)
T KOG1445|consen 205 PIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAP-VHTLELDSSTGVLIPLYDPDTRLLFLAGKG 283 (1012)
T ss_pred ccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCc-ceeEEeecccceEeeeecCCCceEEEecCC
Confidence 12234555532 2235666555566665543 57999998754331 222221 22234455688888776554 45
Q ss_pred CCcEEEEeCCCCe
Q 000936 269 DKSIRVWDVTKRT 281 (1219)
Q Consensus 269 dg~I~iwdl~~~~ 281 (1219)
+.++..+.+...+
T Consensus 284 ~~~l~~lE~~d~q 296 (1012)
T KOG1445|consen 284 TNKLFMLEMQDRQ 296 (1012)
T ss_pred cceEEEEEecCCC
Confidence 6678888776543
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=3.5e-19 Score=192.10 Aligned_cols=245 Identities=17% Similarity=0.300 Sum_probs=189.9
Q ss_pred EEEEEeC-------CCCEEEEEECCCeEEEEECCCCe---E------------------EEEecccCCCEEEEEEecC-C
Q 000936 13 KGLSFHS-------KRPWILASLHSGVIQLWDYRMGT---L------------------IDRFDEHDGPVRGVHFHKS-Q 63 (1219)
Q Consensus 13 ~~i~fsp-------dg~~Lasg~~dg~I~iWd~~~g~---~------------------i~~l~~h~~~V~~l~fsp~-~ 63 (1219)
.|++|.. .|+++|+|+.+..|.|||+.-.. + -..-.+|+..|.+++|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666643 36899999999999999985210 0 0112368889999999875 4
Q ss_pred CEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEE
Q 000936 64 PLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142 (1219)
Q Consensus 64 ~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~ 142 (1219)
+.|||||.|.+|++||+.++++..++..|.+.|.++.|+|..+ .|++|+.|++|.+.|.+........-.-.+.|-.++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 5899999999999999999999999999999999999999765 899999999999999984333222222457799999
Q ss_pred EecCC-CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCC-CEEE
Q 000936 143 FHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIV 220 (1219)
Q Consensus 143 ~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~ 220 (1219)
|+|.. ..+++++.||+|+-+|++... .+.+++..|..+|.++++++.- .+++
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~--------------------------~~vwt~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPG--------------------------KPVWTLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCC--------------------------CceeEEEeccCCcceEEecCCCCccee
Confidence 99976 678888899999999998843 2466889999999999999865 4688
Q ss_pred EEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeeE
Q 000936 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKRTGV 283 (1219)
Q Consensus 221 sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g-~~L~s~s~dg~I~iwdl~~~~~~ 283 (1219)
+++.|+.|++|++.......+....-.-+...|.++.|+- -.++.|+..+.++|||+.+...+
T Consensus 391 t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 9999999999999876542222222222346677777765 35777888888999999876554
No 166
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5.5e-18 Score=174.65 Aligned_cols=248 Identities=19% Similarity=0.299 Sum_probs=188.1
Q ss_pred cccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC----CeEEEEEccCCCCEEEEEEcC--CCCEEEEEECCCeEEEEE
Q 000936 48 DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM----HRCLFTLLGHLDYIRTVQFHH--EYPWIVSASDDQTIRIWN 121 (1219)
Q Consensus 48 ~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~----~~~~~~l~~h~~~I~~l~fs~--d~~~l~s~s~Dg~I~iwd 121 (1219)
.+|..-|.++.|.+.|+++|+|+.|++|+|||.+. ..+....+.|.+.|..+.|-+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 37899999999999999999999999999999643 356677889999999999965 378999999999999997
Q ss_pred CCC---------CeEEEEEecCCCCeEEEEEecC--CCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccc
Q 000936 122 WQS---------RTCISVLTGHNHYVMCASFHPK--EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFG 190 (1219)
Q Consensus 122 ~~s---------~~~i~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1219)
-+. .....++....+.|+.+.|.|. |-.+++++.||.+|+|+....-.....+... .+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~---------Ei-- 158 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH---------EI-- 158 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh---------hh--
Confidence 521 1234566677889999999996 4689999999999999875422211100000 00
Q ss_pred cccceEEEEEeecCCCeEEEEEcCC---CCEEEEEeCC-----CeEEEEECCCCC--eeeEEeecCCCCCeEEEEEccC-
Q 000936 191 GVDAVVKYVLEGHDRGVNWAAFHPT---LPLIVSGADD-----RQVKLWRMNETK--AWEVDTLRGHMNNVSCVMFHAK- 259 (1219)
Q Consensus 191 ~~~~~~~~~~~~~~~~V~~l~~sp~---g~~l~sg~~d-----g~I~iwd~~~~~--~~~~~~~~~h~~~I~~l~~sp~- 259 (1219)
..+......+..+..|+.|+|. .++|++|+.+ +.++||...... ...+.++.+|..+|+.++|.|+
T Consensus 159 ---~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 159 ---QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred ---hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 0001123346677889999985 4678888876 578899876543 3457788899999999999995
Q ss_pred ---CCEEEEEeCCCcEEEEeCCCC--------------------eeEEEEecCCCCEEEEEEeCCCCEEEEEeC
Q 000936 260 ---QDIIVSNSEDKSIRVWDVTKR--------------------TGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1219)
Q Consensus 260 ---g~~L~s~s~dg~I~iwdl~~~--------------------~~~~~~~~~~~~i~~l~~sp~~~~la~g~d 310 (1219)
-.+|++++.|| |+||.+... +.+..+..|++.+|.+.|.-.|..|++.++
T Consensus 236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 236 GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 35799999999 999998731 124446678889999999999998887664
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=2.8e-18 Score=177.52 Aligned_cols=271 Identities=20% Similarity=0.335 Sum_probs=210.4
Q ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEECCCC------------eEEEEec-ccCCCEEEEEEe-------cCCCEEEEEE
Q 000936 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMG------------TLIDRFD-EHDGPVRGVHFH-------KSQPLFVSGG 70 (1219)
Q Consensus 11 ~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g------------~~i~~l~-~h~~~V~~l~fs-------p~~~~Lasgs 70 (1219)
-.+++.|||||..|++-++|..+.+|++... +...+++ .....|..-+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 4578899999999999999999999997421 1111111 234557788885 5677999999
Q ss_pred CCCeEEEEEcCCCeEEEEEcc--CCC---CEEEEEEcCCCCEEEEEECCCeEEEEEC-CCCeEEE--EE-----ecCCCC
Q 000936 71 DDYKIKVWNYKMHRCLFTLLG--HLD---YIRTVQFHHEYPWIVSASDDQTIRIWNW-QSRTCIS--VL-----TGHNHY 137 (1219)
Q Consensus 71 ~Dg~I~vWd~~~~~~~~~l~~--h~~---~I~~l~fs~d~~~l~s~s~Dg~I~iwd~-~s~~~i~--~~-----~~h~~~ 137 (1219)
.+.-|++||.-+|+....+.+ |.+ ...+++|+|||.+|++|. ...|+++|+ +.|..-. .. .+..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 999999999999988776653 333 456899999999988764 678999998 4443221 11 234677
Q ss_pred eEEEEEecCC-CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCC
Q 000936 138 VMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL 216 (1219)
Q Consensus 138 V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g 216 (1219)
+.|++|+|.. ..+++++..+++-+|.-...+ +.+.+.+|.++|+.+.|+++|
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~---------------------------pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR---------------------------PLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCC---------------------------ceeeecccCCCeeeEEeccCc
Confidence 8999999976 589999998888888765533 355778999999999999999
Q ss_pred CEEEEEeC-CCeEEEEECCCCCeeeEEeecCCCC-CeEEEE--EccCCCEEEEEeCCCcEEEEeCCC-CeeEEEEecCCC
Q 000936 217 PLIVSGAD-DRQVKLWRMNETKAWEVDTLRGHMN-NVSCVM--FHAKQDIIVSNSEDKSIRVWDVTK-RTGVQTFRREHD 291 (1219)
Q Consensus 217 ~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~h~~-~I~~l~--~sp~g~~L~s~s~dg~I~iwdl~~-~~~~~~~~~~~~ 291 (1219)
+.|.+|+. |-.|..||++..+. ++..+..|.. .-..+. ..|++++|++|+.||.|++||+++ +..+..+..+.+
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~-pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd 341 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRD-PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD 341 (406)
T ss_pred CeecccccCCCeEEEEeehhccc-hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc
Confidence 99999985 67899999987654 3556666655 233344 468999999999999999999998 666777888889
Q ss_pred CEEEEEEeCCCCEEEEEeC
Q 000936 292 RFWILASHPEMNLLAAGHD 310 (1219)
Q Consensus 292 ~i~~l~~sp~~~~la~g~d 310 (1219)
.+..++++|--.++|+++.
T Consensus 342 ~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 342 TVNGVSLNPIMPILATSSG 360 (406)
T ss_pred cccceecCcccceeeeccC
Confidence 9999999999888887764
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.2e-17 Score=178.31 Aligned_cols=324 Identities=17% Similarity=0.280 Sum_probs=214.9
Q ss_pred CCCEEEEEEeCCCC-EEEEEECCCeEEEEECCCC---------eEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEE
Q 000936 9 SNRVKGLSFHSKRP-WILASLHSGVIQLWDYRMG---------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (1219)
Q Consensus 9 ~~~V~~i~fspdg~-~Lasg~~dg~I~iWd~~~g---------~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vW 78 (1219)
..+|..+.|+++.. .+++|+.|..|++|-+..+ +.+..+..|...|+++.|+|+|.+|+||+++|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35799999999766 9999999999999987543 2345667899999999999999999999999999999
Q ss_pred EcC--------C--------CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEE
Q 000936 79 NYK--------M--------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142 (1219)
Q Consensus 79 d~~--------~--------~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~ 142 (1219)
-.. + ......+.+|...|..++|+|++.++++++.|..+++||+..|+....+..|.+.|..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 755 2 234456778999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecC-CCeEEEEEcCCCCEEEE
Q 000936 143 FHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPLIVS 221 (1219)
Q Consensus 143 ~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~V~~l~~sp~g~~l~s 221 (1219)
|.|-++++++-+.|...+++++...+.. ..|. ..+..-++++.
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~------------------------------~~~~~~~m~~~~~~~~------ 216 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVI------------------------------KRHGLDIMPAKAFNER------ 216 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeee------------------------------eeeeeeEeeecccCCC------
Confidence 9999999999999997777776542211 1111 00111111111
Q ss_pred EeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeC----CCc-----EEEEeCCC-CeeEEEEecCCC
Q 000936 222 GADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSE----DKS-----IRVWDVTK-RTGVQTFRREHD 291 (1219)
Q Consensus 222 g~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~----dg~-----I~iwdl~~-~~~~~~~~~~~~ 291 (1219)
.....+++.-.+.+ .-...++|+|+|.++++.+. ++. .++++-.. .++...+.....
T Consensus 217 --e~~s~rLfhDeTlk-----------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k 283 (434)
T KOG1009|consen 217 --EGKSTRLFHDETLK-----------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK 283 (434)
T ss_pred --CcceeeeeecCchh-----------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc
Confidence 11122233222211 12345678888887776531 111 12222110 112222222223
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeeEEEecCC---cceEEe-cCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCC
Q 000936 292 RFWILASHPEMNLLAAGHDSGMIVFKLERE---RPAFAV-SGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQS 367 (1219)
Q Consensus 292 ~i~~l~~sp~~~~la~g~d~gi~v~~l~~~---~~~~s~-~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 367 (1219)
....+.++| +.|.+..- ...+.+ .+-.++++..+.+.+||.++-...... .. -++..
T Consensus 284 ~~lavr~~p-------------Vy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v--~n----ihy~~ 344 (434)
T KOG1009|consen 284 PALAVRFSP-------------VYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVV--DN----IHYSA 344 (434)
T ss_pred ceEEEEeee-------------eEEEeccccccccccccccceEEEEeecceEEEeccccccceEEE--ee----eeeee
Confidence 333333333 22332211 112222 222333348899999998876554332 21 12559
Q ss_pred CeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCC
Q 000936 368 PRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIG 402 (1219)
Q Consensus 368 i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~ 402 (1219)
++.++|++||..+++++. ||...+..+.....+
T Consensus 345 iTDiaws~dg~~l~vSS~--DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 345 ITDIAWSDDGSVLLVSST--DGFCSLVTFEPWELG 377 (434)
T ss_pred ecceeecCCCcEEEEecc--CCceEEEEEcchhcc
Confidence 999999999998888665 677777777765544
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=4.3e-18 Score=184.72 Aligned_cols=291 Identities=14% Similarity=0.194 Sum_probs=214.2
Q ss_pred EEECCCeEEEEECCCCeEEEEecccC--CCEEEEEEecCCCE-EEEEECCCeEEEEEcCCCe---EEEEEccCCCCEEEE
Q 000936 26 ASLHSGVIQLWDYRMGTLIDRFDEHD--GPVRGVHFHKSQPL-FVSGGDDYKIKVWNYKMHR---CLFTLLGHLDYIRTV 99 (1219)
Q Consensus 26 sg~~dg~I~iWd~~~g~~i~~l~~h~--~~V~~l~fsp~~~~-Lasgs~Dg~I~vWd~~~~~---~~~~l~~h~~~I~~l 99 (1219)
+++....+++||+...+....+..|+ ..+.++.|+....+ +++.+.|..|++|.- .|+ ....-....+.-.|+
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEK-DGKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecc-cCCCCccceeeccccchHHHH
Confidence 33445579999998776665554333 23899999877642 233457888999963 333 211111122244566
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccce
Q 000936 100 QFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIL 179 (1219)
Q Consensus 100 ~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~ 179 (1219)
+......++++|+..+.|+|||++...+.+.+++|...|+++.++-...+|++++..|.|.+..+.++......
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f------ 159 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF------ 159 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce------
Confidence 66666689999999999999999988888899999999999999999999999999999999999886543311
Q ss_pred eeccccccccccccceEEEEEeecCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEcc
Q 000936 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1219)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp 258 (1219)
-.+....|.-+.|+|..+ +|.+++++|.|.+||+...... ......|..+...++|+|
T Consensus 160 --------------------~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~-~~~~~~HsAP~~gicfsp 218 (673)
T KOG4378|consen 160 --------------------TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI-FHASEAHSAPCRGICFSP 218 (673)
T ss_pred --------------------ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc-cchhhhccCCcCcceecC
Confidence 011233456789998765 5667889999999999987652 344567999999999999
Q ss_pred C-CCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeC
Q 000936 259 K-QDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKD 337 (1219)
Q Consensus 259 ~-g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d 337 (1219)
. ..+|++.+.|..|.+||.........+. ...++..++|+++|.+|++|.. .
T Consensus 219 sne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s--------------------------~ 271 (673)
T KOG4378|consen 219 SNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNS--------------------------K 271 (673)
T ss_pred CccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecC--------------------------C
Confidence 4 5678889999999999998776665554 4467899999999999999985 5
Q ss_pred CeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCC
Q 000936 338 RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTE 377 (1219)
Q Consensus 338 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 377 (1219)
|.|..||+...+. ++..+..+. ..|++++|-|.-
T Consensus 272 G~~i~YD~R~~k~-Pv~v~sah~-----~sVt~vafq~s~ 305 (673)
T KOG4378|consen 272 GELIAYDMRSTKA-PVAVRSAHD-----ASVTRVAFQPSP 305 (673)
T ss_pred ceEEEEecccCCC-CceEeeecc-----cceeEEEeeecc
Confidence 5777888876433 333333222 278999998754
No 170
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.79 E-value=3.1e-18 Score=191.80 Aligned_cols=253 Identities=19% Similarity=0.340 Sum_probs=194.1
Q ss_pred cceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE--ecccCCCEEEEEEecCCC-EEEEEECCCeEEEE
Q 000936 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDR--FDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVW 78 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~--l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vW 78 (1219)
+..+..|-..|..+.|-|-...|++++.|.++++||+++++++.. +.+|.+.|.+++|+|+.+ .|++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 345678999999999999777889999999999999999998877 889999999999999665 78999999999999
Q ss_pred EcCCCe---------------------------EEEEEccCCCCEEE---EEEcCCCCEEEEEEC-CCeEEEEECCCCeE
Q 000936 79 NYKMHR---------------------------CLFTLLGHLDYIRT---VQFHHEYPWIVSASD-DQTIRIWNWQSRTC 127 (1219)
Q Consensus 79 d~~~~~---------------------------~~~~l~~h~~~I~~---l~fs~d~~~l~s~s~-Dg~I~iwd~~s~~~ 127 (1219)
|+.-.. .+.....|...|.+ +.+..|...|++++. |+.|+|||++....
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 975221 01112234455555 666677788999888 99999999986544
Q ss_pred EEE--------EecC---CCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceE
Q 000936 128 ISV--------LTGH---NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (1219)
Q Consensus 128 i~~--------~~~h---~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1219)
... +..| ...+.++.....|.++...+.|+.|..|++.+.......
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~----------------------- 309 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVA----------------------- 309 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchh-----------------------
Confidence 322 1223 345778888888888888888999999999885543211
Q ss_pred EEEEeecCC--CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCC-CEEEEEeCCCcEE
Q 000936 197 KYVLEGHDR--GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIR 273 (1219)
Q Consensus 197 ~~~~~~~~~--~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g-~~L~s~s~dg~I~ 273 (1219)
.+.++.. --..-..+|++.++++|+.|....+|.+.+... ....+.+|.-.|++++|.|.. .-+++++.|..++
T Consensus 310 --~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~-~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~k 386 (720)
T KOG0321|consen 310 --EFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA-PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVK 386 (720)
T ss_pred --hccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC-ChhhhhCcceEEEEEeeccccCCCceeeccCcceE
Confidence 1111111 112235689999999999999999999988765 356778999999999998843 4577789999999
Q ss_pred EEeCCCC
Q 000936 274 VWDVTKR 280 (1219)
Q Consensus 274 iwdl~~~ 280 (1219)
+|++..+
T Consensus 387 iW~l~~~ 393 (720)
T KOG0321|consen 387 IWRLSNG 393 (720)
T ss_pred EEeccCc
Confidence 9999654
No 171
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=4.2e-18 Score=184.84 Aligned_cols=259 Identities=16% Similarity=0.245 Sum_probs=207.5
Q ss_pred CEEEEEEeCCCCEEEEE--ECCCeEEEEECCCCe---E--EEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 000936 11 RVKGLSFHSKRPWILAS--LHSGVIQLWDYRMGT---L--IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (1219)
Q Consensus 11 ~V~~i~fspdg~~Lasg--~~dg~I~iWd~~~g~---~--i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~ 83 (1219)
.+.++.|+.... |+++ +.|..|++|. +.|+ . +....+. .-.|++......++++||..+.|+|||++..
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k 111 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK 111 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEec-ccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH
Confidence 488999987664 4444 4577889997 4443 1 1222222 3345555555689999999999999999988
Q ss_pred eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC-CeEEEEEecCCC-EEEEEECCCeEEE
Q 000936 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNH-YVMCASFHPKED-LVVSASLDQTVRV 161 (1219)
Q Consensus 84 ~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~-~V~~l~~sp~~~-~l~s~s~dg~I~v 161 (1219)
.+.+.+.+|...|+++.++....+|++++..|.|.|..+.++.....+...++ .|.-+.|+|..+ +|.+++.+|.|.+
T Consensus 112 l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtl 191 (673)
T KOG4378|consen 112 LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTL 191 (673)
T ss_pred HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEE
Confidence 88888999999999999999999999999999999999999988888875534 455899999875 6678899999999
Q ss_pred EECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeee
Q 000936 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWE 240 (1219)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sg~~dg~I~iwd~~~~~~~~ 240 (1219)
||+.+..... .....|..+...++|+|.. .+|++.+.|..|.+||......
T Consensus 192 wDv~g~sp~~--------------------------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s-- 243 (673)
T KOG4378|consen 192 WDVQGMSPIF--------------------------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS-- 243 (673)
T ss_pred EeccCCCccc--------------------------chhhhccCCcCcceecCCccceEEEecccceEEEeecccccc--
Confidence 9998754432 2456799999999999965 4778899999999999997664
Q ss_pred EEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEEEEecCCCCEEEEEEeCCC
Q 000936 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK-RTGVQTFRREHDRFWILASHPEM 302 (1219)
Q Consensus 241 ~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~-~~~~~~~~~~~~~i~~l~~sp~~ 302 (1219)
.. .-....+.+.++|+++|.+|+.|+..|.|..||++. ..++.....|...|++++|-|..
T Consensus 244 ~~-~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 244 TD-RLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cc-eeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 22 223457889999999999999999999999999985 45677888899999999998875
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.5e-19 Score=212.91 Aligned_cols=245 Identities=24% Similarity=0.398 Sum_probs=202.4
Q ss_pred CCCEEEEEEeCCCCE----EEEEECCCeEEEEECCC---C---eEEEEecccCCCEEEEEEecCCC-EEEEEECCCeEEE
Q 000936 9 SNRVKGLSFHSKRPW----ILASLHSGVIQLWDYRM---G---TLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKV 77 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~----Lasg~~dg~I~iWd~~~---g---~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~v 77 (1219)
..+...++|.+.|.. ||.|+.||.|.+||... + ..+.+...|.++|+++.|++.+. +||+|++||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 357889999997766 88899999999999764 2 34567788999999999999766 9999999999999
Q ss_pred EEcCCCeEEEEEc--cCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCC--CeEEEEEecCC-CEEE
Q 000936 78 WNYKMHRCLFTLL--GHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNH--YVMCASFHPKE-DLVV 151 (1219)
Q Consensus 78 Wd~~~~~~~~~l~--~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~--~V~~l~~sp~~-~~l~ 151 (1219)
||+.+-+.-++.. ...+.|.+++|+..-. .|++++.+|.+.|||++..+.+..+..|.. .+..++|||+. ..++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9998755444442 2456899999998654 788899999999999998888888876655 36789999988 5677
Q ss_pred EEECCC---eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCC-CEEEEEeCCCe
Q 000936 152 SASLDQ---TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQ 227 (1219)
Q Consensus 152 s~s~dg---~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sg~~dg~ 227 (1219)
+++.|. .|.+||++.... ...++.+|..+|.++.|++.+ .++++++.|+.
T Consensus 224 ~As~dd~~PviqlWDlR~ass--------------------------P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ 277 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASS--------------------------PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR 277 (1049)
T ss_pred eecCCCCCceeEeecccccCC--------------------------chhhhcccccceeeeccCCCCchhhhcccCCCC
Confidence 777654 599999876322 233568999999999999977 78999999999
Q ss_pred EEEEECCCCCeeeEEeecCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCe
Q 000936 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRT 281 (1219)
Q Consensus 228 I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~-~L~s~s~dg~I~iwdl~~~~ 281 (1219)
|.+|+.++++. +..+....+.+..+.|+|... .+++++-||.|.||.+....
T Consensus 278 ii~wN~~tgEv--l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 278 IICWNPNTGEV--LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeEecCCCceE--eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999987 888888889999999999654 88899999999999987543
No 173
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=1.1e-18 Score=193.70 Aligned_cols=264 Identities=20% Similarity=0.328 Sum_probs=200.2
Q ss_pred eecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCC--------CeEEEEecccCCCEEEEEEecCCCEEEEEECCCeE
Q 000936 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM--------GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKI 75 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~--------g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I 75 (1219)
++..|.+.|+.++|+|..+.|++++.||+|.+|++.. -+.+.+|.+|.+||.|++..+++..+.+||.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 5678999999999999999999999999999999932 25778899999999999999999999999999999
Q ss_pred EEEEcCC----------CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec--CCCCeEEEEE
Q 000936 76 KVWNYKM----------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG--HNHYVMCASF 143 (1219)
Q Consensus 76 ~vWd~~~----------~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~--h~~~V~~l~~ 143 (1219)
+.|++.. ......+.||.+.|+.+++|+....|++++.||+++.|+.....+ .++.. ..+...++.+
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 9996531 134457789999999999999999999999999999999876655 33322 2233455555
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEe
Q 000936 144 HPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA 223 (1219)
Q Consensus 144 sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~ 223 (1219)
-.....+. ..+.....+++...+..... .++.... .........++.+.++|++.+.+++.
T Consensus 448 ~ss~~a~~--~~s~~~~~~~~~~~ev~s~~-------------~~~~s~~----~~~~~~~~~in~vVs~~~~~~~~~~h 508 (577)
T KOG0642|consen 448 TSSRPAHS--LASFRFGYTSIDDMEVVSDL-------------LIFESSA----SPGPRRYPQINKVVSHPTADITFTAH 508 (577)
T ss_pred ccchhHhh--hhhcccccccchhhhhhhhe-------------eeccccC----CCcccccCccceEEecCCCCeeEecc
Confidence 43321111 12233444443332211100 0000000 00011224577889999999999999
Q ss_pred CCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC
Q 000936 224 DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE 289 (1219)
Q Consensus 224 ~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~ 289 (1219)
.|+.|+++|..+++. +.....|...++++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 509 ed~~Ir~~dn~~~~~--l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGKI--LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred cCCceeccccccccc--chheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 999999999999997 8888999999999999999999999999999999999877777665544
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=3.9e-19 Score=203.49 Aligned_cols=275 Identities=19% Similarity=0.314 Sum_probs=226.1
Q ss_pred CcceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 000936 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 1 ml~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1219)
|+++|.||-+.|.|+.|...|.++++|+.|..++||..+++.++....+|.+.|+.++.+.+..++++++.|..|+||.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE----ecCCCCeEEEEEecCCCEEEEEECC
Q 000936 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL----TGHNHYVMCASFHPKEDLVVSASLD 156 (1219)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~----~~h~~~V~~l~~sp~~~~l~s~s~d 156 (1219)
.++.++..+.+|++.|++++|+|-. +.+.||++++||++-.-.+..- .....-+.++.|...+..+.|++.|
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 9999999999999999999999964 7789999999998711111110 0123557778888888899999999
Q ss_pred CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCC
Q 000936 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNE 235 (1219)
Q Consensus 157 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sg~~dg~I~iwd~~~ 235 (1219)
+.-+.|.+.... .+...+.-+.++.+. .+.+++-.+-.+.+|++.+
T Consensus 338 ~ea~n~e~~~l~---------------------------------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 338 GEARNHEFEQLA---------------------------------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT 384 (1113)
T ss_pred cccccchhhHhh---------------------------------hhccceEEEeccccccccceeeeeeeEeeeeeccc
Confidence 998888765321 122222222222222 3566666788899999999
Q ss_pred CCeeeEEeecCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCee
Q 000936 236 TKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI 314 (1219)
Q Consensus 236 ~~~~~~~~~~~h~~~I~~l~~sp~g~-~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~ 314 (1219)
+.. .+.+.+|...+..+.+||-.. ...+++.||...|||+-.+.+++.+......+..-.||++|..++...+.|..
T Consensus 385 g~l--~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql 462 (1113)
T KOG0644|consen 385 GQL--LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQL 462 (1113)
T ss_pred chh--hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCce
Confidence 987 788899999999999999554 45678999999999999999998887777778888999999999887665543
No 175
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=7.8e-17 Score=172.28 Aligned_cols=324 Identities=19% Similarity=0.279 Sum_probs=207.5
Q ss_pred CCCeEEEEEecCCC-EEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEc
Q 000936 135 NHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213 (1219)
Q Consensus 135 ~~~V~~l~~sp~~~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 213 (1219)
..+|.++.|++++. .++||+.|..|++|-+........ .........+..|...|+.+.|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~------------------~~~V~y~s~Ls~H~~aVN~vRf~ 74 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG------------------DMKVEYLSSLSRHTRAVNVVRFS 74 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC------------------ceeEEEeecccCCcceeEEEEEc
Confidence 35688899988775 999999999999999876433210 01222344688899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECC--------C-----CCee-eEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000936 214 PTLPLIVSGADDRQVKLWRMN--------E-----TKAW-EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1219)
Q Consensus 214 p~g~~l~sg~~dg~I~iwd~~--------~-----~~~~-~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~ 279 (1219)
|+|.++++|+++|.|.+|... + .+.| ....+++|...|..++|+|++.++++++.|.++++||+..
T Consensus 75 p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 75 PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc
Confidence 999999999999999999876 2 2223 3456788999999999999999999999999999999999
Q ss_pred CeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCC-eeEEEecCCcceEEecCCEEEEE--eC---CeEEEEEecCCcceee
Q 000936 280 RTGVQTFRREHDRFWILASHPEMNLLAAGHDSG-MIVFKLERERPAFAVSGDSLFYA--KD---RFLRYYEFSTQKDTQV 353 (1219)
Q Consensus 280 ~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~g-i~v~~l~~~~~~~s~~~~~l~~~--~d---~~i~v~d~~~~~~~~~ 353 (1219)
|.....+..|..-+..++|.|-++++++-+.+. ...+.+...+......-..+... .. ...++|.-.+.
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTl----- 229 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETL----- 229 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCch-----
Confidence 999999999999999999999999998765433 44444433332221111111110 11 11222211111
Q ss_pred EeecCCCCCCCCCCCeEEEEccCCCEEEEEEeC--CCCEE---EEEEecCCCCCCCccccccccCceeEEEEEeCCeEEE
Q 000936 354 IPIRRPGSTSLNQSPRTLSYSPTENAVLICSDV--DGGSY---ELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAV 428 (1219)
Q Consensus 354 ~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~--~dg~i---~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~ 428 (1219)
....+.++|+|+|..++.-.+. -++.+ ..|..+..........++........+.|+
T Consensus 230 -----------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~------- 291 (434)
T KOG1009|consen 230 -----------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS------- 291 (434)
T ss_pred -----------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee-------
Confidence 1255668999999876653331 01111 112222211111111111111122222222
Q ss_pred EEcCCCEEEEEecCCceeEeeeCCcceEEEEEeCCCcEE-EEeCCeEEEEEcCCCeEEEEEec---CCeeEEEEcCCCCE
Q 000936 429 LDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLL-CRAEDRVVIFDLQQRLVLGDLQT---PFVKYVVWSNDMES 504 (1219)
Q Consensus 429 ~~~~dg~I~Iwdl~~~~~~~i~~~~~v~~l~~s~dg~~L-~s~d~~I~l~dl~~~~~l~~~~~---~~v~~v~ws~dg~~ 504 (1219)
-..|.+. +-..-..+.--|-+..+ +.+.+.|++||.++-.++..... ..++.++||+||..
T Consensus 292 -------pVy~elr--------p~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~ 356 (434)
T KOG1009|consen 292 -------PVYYELR--------PLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSV 356 (434)
T ss_pred -------eeEEEec--------cccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcE
Confidence 1122222 00000002222333333 44678999999999888877665 88999999999999
Q ss_pred EEEEeCCeEE
Q 000936 505 VALLSKHAII 514 (1219)
Q Consensus 505 la~~s~~~i~ 514 (1219)
+++.+.+++.
T Consensus 357 l~vSS~DGyC 366 (434)
T KOG1009|consen 357 LLVSSTDGFC 366 (434)
T ss_pred EEEeccCCce
Confidence 9999998854
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=5.4e-18 Score=176.13 Aligned_cols=254 Identities=21% Similarity=0.424 Sum_probs=197.6
Q ss_pred cCCCEEEEEEeCC----CCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCC-CEEEEEECCCeEEEEEcCC
Q 000936 8 KSNRVKGLSFHSK----RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYKM 82 (1219)
Q Consensus 8 h~~~V~~i~fspd----g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd~~~ 82 (1219)
|......++|+-| .+++|+|+.-|.|+|.|+.+++....+.+|...|..+.|+|+. +++++++.|..|++||+++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 6667778888764 5689999999999999999999999999999999999999976 4889999999999999999
Q ss_pred CeEEEEE---ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-------------------------EE---EE
Q 000936 83 HRCLFTL---LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC-------------------------IS---VL 131 (1219)
Q Consensus 83 ~~~~~~l---~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~-------------------------i~---~~ 131 (1219)
..|+..+ .+|.+.|.++.|++++.+|+|++.|.+|++|++...+. .. +-
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 9999887 47999999999999999999999999999999873210 00 12
Q ss_pred ecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccc--cccCCccceeeccccccccccccceEEEEEeecCCCeEE
Q 000936 132 TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK--TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW 209 (1219)
Q Consensus 132 ~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 209 (1219)
.-|..+|-|+.|. |+++++-|.++.|..|.....+.. ...+. .....+...+.-....+.-
T Consensus 248 diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~---------------es~~Ti~~~~~~~~c~iWf 310 (385)
T KOG1034|consen 248 DIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPP---------------ESATTILGEFDYPMCDIWF 310 (385)
T ss_pred ccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCC---------------ccceeeeeEeccCccceEE
Confidence 3577888888887 689999999999999987432221 00010 0111122223333444554
Q ss_pred E--EEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeec--CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000936 210 A--AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR--GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1219)
Q Consensus 210 l--~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~ 278 (1219)
+ +|.|-++.|+.|...|.|.+||++........++. .....|...+|+.||..|+....|++|.-||..
T Consensus 311 irf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 311 IRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 4 55677889999999999999999877653233332 234568899999999999999999999999853
No 177
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.78 E-value=2.8e-17 Score=167.97 Aligned_cols=247 Identities=18% Similarity=0.318 Sum_probs=195.7
Q ss_pred cccCCCEEEEEEeC-CCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecC---CCEEEEEECCCeEEEEEcC
Q 000936 6 ETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS---QPLFVSGGDDYKIKVWNYK 81 (1219)
Q Consensus 6 ~~h~~~V~~i~fsp-dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~---~~~Lasgs~Dg~I~vWd~~ 81 (1219)
.+|.-.|..+.|-| |...+.+++.|.+++|||..+-+....|+ -++.|.+-+|||- ..++|+|..|-+|++-|+.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 47888999999999 77788899999999999999988888885 5778999999983 4478889999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCE-EEEEECCCeEEEEECCCC-eEEEEE--------------ecCCCCeEEEEEec
Q 000936 82 MHRCLFTLLGHLDYIRTVQFHHEYPW-IVSASDDQTIRIWNWQSR-TCISVL--------------TGHNHYVMCASFHP 145 (1219)
Q Consensus 82 ~~~~~~~l~~h~~~I~~l~fs~d~~~-l~s~s~Dg~I~iwd~~s~-~~i~~~--------------~~h~~~V~~l~~sp 145 (1219)
+|.+.+++.||.+.|.++.|+|...| |++|+.||.|++||++.- .|..++ ..|.+.|..++|..
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 99999999999999999999999885 678999999999999743 233333 35778899999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCC
Q 000936 146 KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD 225 (1219)
Q Consensus 146 ~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~d 225 (1219)
++.++++++.|..+++|+...++.....-...+- .... .+ .+. +. +-+...++.--.+
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~-----------n~~~----~~-----~~~-~~-~~~s~vfv~~p~~ 314 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESGRNTLREFGPIIH-----------NQTT----SF-----AVH-IQ-SMDSDVFVLFPND 314 (397)
T ss_pred cchhhhhccCccceEEeecccCcccccccccccc-----------cccc----cc-----eEE-Ee-ecccceEEEEecC
Confidence 9999999999999999999887654321110000 0000 00 011 11 2223344444556
Q ss_pred CeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 000936 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (1219)
Q Consensus 226 g~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl 277 (1219)
+.+.++++-.+.. +..+..|...|.|..+.|+-+...+++.|+.|..|-.
T Consensus 315 ~~lall~~~sgs~--ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 315 GSLALLNLLEGSF--VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CeEEEEEccCceE--EEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 8888998888876 8888899889999999999999999999999999975
No 178
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=5e-17 Score=175.62 Aligned_cols=268 Identities=20% Similarity=0.321 Sum_probs=190.9
Q ss_pred EEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEecccC----CCEEEEEEec-------CCCEEEEEECCCeEEEEE
Q 000936 14 GLSFHSKRPWILASLHS---GVIQLWDYRMGTLIDRFDEHD----GPVRGVHFHK-------SQPLFVSGGDDYKIKVWN 79 (1219)
Q Consensus 14 ~i~fspdg~~Lasg~~d---g~I~iWd~~~g~~i~~l~~h~----~~V~~l~fsp-------~~~~Lasgs~Dg~I~vWd 79 (1219)
.+..-|+.+.|+++-.. ..+.+|=++.... .-+-.|+ ..-.|+.|.. .|+++|.|+.|..|.|||
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~-nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWD 208 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE-NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWD 208 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCc-ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEec
Confidence 34455766677776432 3344444433321 1111122 2235777743 367999999999999999
Q ss_pred cCCCe---EEE------------------EEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCCC
Q 000936 80 YKMHR---CLF------------------TLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHY 137 (1219)
Q Consensus 80 ~~~~~---~~~------------------~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~ 137 (1219)
+.-.. +.. .-.+|++.|..+.|+..-+ .|+|||.|.+|++||+.++++..++..|...
T Consensus 209 LDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~ 288 (463)
T KOG0270|consen 209 LDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKK 288 (463)
T ss_pred cccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCc
Confidence 85211 111 1236888899999988654 8999999999999999999999999999999
Q ss_pred eEEEEEecCC-CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCC
Q 000936 138 VMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL 216 (1219)
Q Consensus 138 V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g 216 (1219)
|.++.|+|.. .+|++||.|++|.+.|.+...... ..-...+.|..++|+|..
T Consensus 289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~---------------------------~~wk~~g~VEkv~w~~~s 341 (463)
T KOG0270|consen 289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG---------------------------KEWKFDGEVEKVAWDPHS 341 (463)
T ss_pred eeEEEecCCCceEEEeccccceEEeeeccCccccC---------------------------ceEEeccceEEEEecCCC
Confidence 9999999976 789999999999999998622111 112245778889999865
Q ss_pred -CEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCee--EEEEecCCCC
Q 000936 217 -PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKRTG--VQTFRREHDR 292 (1219)
Q Consensus 217 -~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~-g~~L~s~s~dg~I~iwdl~~~~~--~~~~~~~~~~ 292 (1219)
..++++..||+|+-+|++.... ++.++..|.++|+++++++. ..++++++.|+.|++|++....+ +......-++
T Consensus 342 e~~f~~~tddG~v~~~D~R~~~~-~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~r 420 (463)
T KOG0270|consen 342 ENSFFVSTDDGTVYYFDIRNPGK-PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGR 420 (463)
T ss_pred ceeEEEecCCceEEeeecCCCCC-ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccc
Confidence 4678888999999999998742 38899999999999999874 46789999999999999875443 2211112234
Q ss_pred EEEEEEeCCCC-EEEEEeC
Q 000936 293 FWILASHPEMN-LLAAGHD 310 (1219)
Q Consensus 293 i~~l~~sp~~~-~la~g~d 310 (1219)
..|.++.|+-. .++.|..
T Consensus 421 l~c~~~~~~~a~~la~GG~ 439 (463)
T KOG0270|consen 421 LHCFALDPDVAFTLAFGGE 439 (463)
T ss_pred eeecccCCCcceEEEecCc
Confidence 56666777654 3445543
No 179
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.5e-18 Score=207.44 Aligned_cols=271 Identities=15% Similarity=0.269 Sum_probs=205.8
Q ss_pred EEEEEEeCCCC-EEEEEE----------CCCeEEEEECC--CCe----EEEEecccCCCEEEEEEecCCCE----EEEEE
Q 000936 12 VKGLSFHSKRP-WILASL----------HSGVIQLWDYR--MGT----LIDRFDEHDGPVRGVHFHKSQPL----FVSGG 70 (1219)
Q Consensus 12 V~~i~fspdg~-~Lasg~----------~dg~I~iWd~~--~g~----~i~~l~~h~~~V~~l~fsp~~~~----Lasgs 70 (1219)
--.++|+|+++ ++++|. .+.++-||.+. +.. .+..+ ....+...++|.+.+.. ++.|.
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ 87 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGL 87 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccc
Confidence 34579999987 566552 24556666543 222 33333 24556789999987765 88889
Q ss_pred CCCeEEEEEcCC---C---eEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEEE
Q 000936 71 DDYKIKVWNYKM---H---RCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLT--GHNHYVMCA 141 (1219)
Q Consensus 71 ~Dg~I~vWd~~~---~---~~~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~--~h~~~V~~l 141 (1219)
+||.|.+||... + ..+.+...|.+.|+.+.|++... +|++|+.||.|.|||+..-+.-.... ...+.|.++
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 999999999764 1 34556778999999999999876 99999999999999998754433331 245679999
Q ss_pred EEecCC-CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCC-EE
Q 000936 142 SFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LI 219 (1219)
Q Consensus 142 ~~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l 219 (1219)
+|+..- ..|++++.+|.+.|||++..+... .....+....+..++|||+.- .+
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii-------------------------~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPII-------------------------KLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCccc-------------------------ccccCCCccceeeeeeCCCCceee
Confidence 998654 678899999999999998854321 112222234578899999863 45
Q ss_pred EEEeCC---CeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEE
Q 000936 220 VSGADD---RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWI 295 (1219)
Q Consensus 220 ~sg~~d---g~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g-~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~ 295 (1219)
+++++| -.|.+||++.... ++..+++|...|.++.|++.+ .++++++.|+.|.+|+.++++.+..+....+.+..
T Consensus 223 ~~As~dd~~PviqlWDlR~ass-P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASS-PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred eeecCCCCCceeEeecccccCC-chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 555544 3699999886554 377889999999999999966 89999999999999999999999999998899999
Q ss_pred EEEeCCCC-EEEEEe
Q 000936 296 LASHPEMN-LLAAGH 309 (1219)
Q Consensus 296 l~~sp~~~-~la~g~ 309 (1219)
+.|.|... .+++.+
T Consensus 302 v~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAAS 316 (1049)
T ss_pred eeecCCCcchhhhhe
Confidence 99999765 555554
No 180
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.76 E-value=1.2e-12 Score=166.05 Aligned_cols=560 Identities=14% Similarity=0.128 Sum_probs=319.6
Q ss_pred cCCCEEEEEEeCCCCEEEEEECCCeEEEE----ECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 000936 8 KSNRVKGLSFHSKRPWILASLHSGVIQLW----DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (1219)
Q Consensus 8 h~~~V~~i~fspdg~~Lasg~~dg~I~iW----d~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~ 83 (1219)
..+.|.++.|-++...++.+..+|.|.+. +..+. .+.....-++.|.+++||||+.+|+..+.++++.+-+ ++.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~f 151 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDF 151 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccc
Confidence 35789999999999999999999999999 54333 2333334467899999999999999999999998886 455
Q ss_pred eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--------------EEEEecCCCCeEEEEEecCCCE
Q 000936 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC--------------ISVLTGHNHYVMCASFHPKEDL 149 (1219)
Q Consensus 84 ~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~--------------i~~~~~h~~~V~~l~~sp~~~~ 149 (1219)
..+....-+..... ....++.++...=.=+.-..|+. ...+. +...-..++|-.||.+
T Consensus 152 d~i~E~~l~~~~~~-------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 152 DPISEVPLDSDDFG-------ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEY 223 (928)
T ss_pred eEEEEeecCccccC-------CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcE
Confidence 66655443322110 01222222211100000000110 11223 4445677999999999
Q ss_pred EEEEEC---C---CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEe
Q 000936 150 VVSASL---D---QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA 223 (1219)
Q Consensus 150 l~s~s~---d---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~ 223 (1219)
+++.+. . +.+|||+-.+ . +..+.+.-.+--.+++|-|.|++|++..
T Consensus 224 FAVss~~~~~~~~R~iRVy~ReG-~---------------------------L~stSE~v~gLe~~l~WrPsG~lIA~~q 275 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSREG-E---------------------------LQSTSEPVDGLEGALSWRPSGNLIASSQ 275 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCCc-e---------------------------EEeccccCCCccCCccCCCCCCEEEEEE
Confidence 998875 2 5789998653 1 1112222223345689999999999876
Q ss_pred C---CCeEEEEECCCCCeeeEEeec--CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee--EEEEecC-CCCEEE
Q 000936 224 D---DRQVKLWRMNETKAWEVDTLR--GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG--VQTFRRE-HDRFWI 295 (1219)
Q Consensus 224 ~---dg~I~iwd~~~~~~~~~~~~~--~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~--~~~~~~~-~~~i~~ 295 (1219)
. ...|.+|.-++-+..+ ..++ .....|..+.|++++..|+....|. |.+|-..+..- .+.+... ...+..
T Consensus 276 ~~~~~~~VvFfErNGLrhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~ 353 (928)
T PF04762_consen 276 RLPDRHDVVFFERNGLRHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNF 353 (928)
T ss_pred EcCCCcEEEEEecCCcEeee-EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCc
Confidence 4 4568888877655322 2222 3456799999999999999988765 99999887642 3333322 234555
Q ss_pred EEEeCCCC-EEEEEeC-CCeeEEEe----cCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCe
Q 000936 296 LASHPEMN-LLAAGHD-SGMIVFKL----ERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPR 369 (1219)
Q Consensus 296 l~~sp~~~-~la~g~d-~gi~v~~l----~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~ 369 (1219)
+.|+|... .+.+.+. +.+..+++ .........+...+++..+..+.+-.+...-..|.+......- ..+|.
T Consensus 354 ~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~---~~~v~ 430 (928)
T PF04762_consen 354 VKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL---PSPVN 430 (928)
T ss_pred eEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC---CCCcE
Confidence 99999543 4555555 55543332 2222111223345555588899998888755544433332222 33899
Q ss_pred EEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCC-----ccc----------cccccCceeEEEEEeCCeEEEEEcCC-
Q 000936 370 TLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRG-----DSV----------QDAKKGLGGSAIFIARNRFAVLDKSS- 433 (1219)
Q Consensus 370 ~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~-----~~~----------~~~~~~~i~~~~fs~d~~~l~~~~~d- 433 (1219)
.++|++++..+++... +|.+.+|..+....... ... ..........++|..++.+++....+
T Consensus 431 ~vaf~~~~~~~avl~~--d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (928)
T PF04762_consen 431 DVAFSPSNSRFAVLTS--DGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDS 508 (928)
T ss_pred EEEEeCCCCeEEEEEC--CCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCc
Confidence 9999999886665554 67899998655432210 000 11123356789999998887776654
Q ss_pred --CEEEEEecC-Cc---eeEee-eCCcceEEEEEeCCCc-EE-EEeCCeEEEEEcCCCeEE-EEEec-CCeeEEEEcCCC
Q 000936 434 --NQVLVKNLK-NE---VVKKS-ILPIAADAIFYAGTGN-LL-CRAEDRVVIFDLQQRLVL-GDLQT-PFVKYVVWSNDM 502 (1219)
Q Consensus 434 --g~I~Iwdl~-~~---~~~~i-~~~~~v~~l~~s~dg~-~L-~s~d~~I~l~dl~~~~~l-~~~~~-~~v~~v~ws~dg 502 (1219)
..+.++++. .. ..... ..+..+..+...++.. ++ -..+|.+..++....... ..++. ..-..+....+.
T Consensus 509 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~ 588 (928)
T PF04762_consen 509 NQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGS 588 (928)
T ss_pred ccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCc
Confidence 678888875 21 11222 2222455555555543 22 345888886665544322 12222 111222222222
Q ss_pred C---EEEEEeC-CeEEEEecCccceeeeeeeeEEeeeEEecCCeEEEEcCCee-eEEecCC----------c-----eeE
Q 000936 503 E---SVALLSK-HAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHI-KYCLPNG----------D-----SGI 562 (1219)
Q Consensus 503 ~---~la~~s~-~~i~i~~~~l~~~~~~~e~~~iks~~wd~~~~~iy~t~~~i-ky~l~~g----------~-----~~~ 562 (1219)
. .++..+. +.+|+ +.. .++. .+.|..- .+..++|||.+|. ++.-.+. . ...
T Consensus 589 ~~~~~~~GLs~~~~Ly~-n~~--~la~-----~~tSF~v-~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~ 659 (928)
T PF04762_consen 589 EDKRVLFGLSSNGRLYA-NSR--LLAS-----NCTSFAV-TDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDER 659 (928)
T ss_pred cceeEEEEECCCCEEEE-CCE--EEec-----CCceEEE-EcCEEEEEecCceEEEEECcCchhhcccccCccccccccc
Confidence 2 3333333 33443 211 1110 1112222 4678999999884 5442230 0 012
Q ss_pred EEeccccEEEEEEe--CCEEEEEecCCceEEEEeCch-hHhHHHHHhccCHHHHHHhhhcCc
Q 000936 563 IRTLDVPIYITKVS--GNTIFCLDRDGKNRAIVIDAT-EYIFKLSLLRKRYDHVMSMIRNSQ 621 (1219)
Q Consensus 563 i~~~~~~~~l~~~~--~~~l~~l~~~~~~~~~~ld~~-e~~f~~~l~~~~~~~a~~~i~~~~ 621 (1219)
++.++.--.|+.+- ..++.+.-.-|..+++.-..- ...-+..+..++|.+|+.++|+.+
T Consensus 660 ~R~VERGsriVt~vp~~~~vVLQmPRGNLEtI~PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhR 721 (928)
T PF04762_consen 660 CRRVERGSRIVTAVPSDTSVVLQMPRGNLETIYPRALVLAGIRKLLDAKDYKEAFELCRKHR 721 (928)
T ss_pred cccCccCCEEEEEeCCCceEEEEcCCCchhhhccHhHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 34444433444432 234555555555554432221 111345678899999999998764
No 181
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=2.1e-16 Score=163.94 Aligned_cols=368 Identities=13% Similarity=0.107 Sum_probs=236.3
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEE-EEECCCeEEEEEcCCCeEEEEEccC
Q 000936 14 GLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFV-SGGDDYKIKVWNYKMHRCLFTLLGH 92 (1219)
Q Consensus 14 ~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~La-sgs~Dg~I~vWd~~~~~~~~~l~~h 92 (1219)
-.+|||+|+|+|+.+.- .+.|-|..+-+..+.|. --..|.-+.|..|.-+++ ....|+.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 46799999999998755 78888877766554442 245678899998887655 4578899999999988888888888
Q ss_pred CCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCcccc
Q 000936 93 LDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKT 171 (1219)
Q Consensus 93 ~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~ 171 (1219)
...+.+++|||||+ .|.+...+-.|.+|.+.+.+....- -....+..++|+|+|++.+.++.-.....+++...+
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~--- 166 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK--- 166 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCCceeeeeecccHHHHHHHHhhH---
Confidence 88999999999996 5556677899999999887665432 234456889999999998888754221111111100
Q ss_pred ccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCe
Q 000936 172 VSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNV 251 (1219)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I 251 (1219)
+..+...+.-.+-..+.+.|+|||+.+++ ||.--.-. +... ...-.+
T Consensus 167 ---------------------~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leyk--v~aY-e~~lG~ 213 (447)
T KOG4497|consen 167 ---------------------AWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYK--VYAY-ERGLGL 213 (447)
T ss_pred ---------------------HHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhhe--eeee-eeccce
Confidence 00011122233445677999999987774 44322111 1111 112357
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEec----C---------------CCCEEEEEEeCCCCEEEEEeCCC
Q 000936 252 SCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR----E---------------HDRFWILASHPEMNLLAAGHDSG 312 (1219)
Q Consensus 252 ~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~----~---------------~~~i~~l~~sp~~~~la~g~d~g 312 (1219)
..+.|+|.+++|++|+.|+.+|+.+--+.+....+-. + .-...++.|.|..--.-.+..+.
T Consensus 214 k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se 293 (447)
T KOG4497|consen 214 KFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESE 293 (447)
T ss_pred eEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccch
Confidence 7899999999999999999999987655554333210 0 00112344444321111111110
Q ss_pred ---------eeEEEec--CCc---------ceEEecCCEEEEE---eCCeEEEEEecCCcceeeEeecCCCCCCCCCCCe
Q 000936 313 ---------MIVFKLE--RER---------PAFAVSGDSLFYA---KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPR 369 (1219)
Q Consensus 313 ---------i~v~~l~--~~~---------~~~s~~~~~l~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~ 369 (1219)
+.+-.+. ... .+++.+..++++. ..+.+.+||+..-+...++.-+ . +|+
T Consensus 294 ~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk-----~---pir 365 (447)
T KOG4497|consen 294 TIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQK-----H---PIR 365 (447)
T ss_pred hhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhc-----c---cee
Confidence 1111111 111 1566666666666 4567999999986654443322 2 899
Q ss_pred EEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCC
Q 000936 370 TLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSN 434 (1219)
Q Consensus 370 ~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg 434 (1219)
...|.|....++++.+ ...+.+|........ ..++..-.|..+.|.-+|.+++..+.|.
T Consensus 366 af~WdP~~prL~vctg--~srLY~W~psg~~~V----~vP~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCTG--KSRLYFWAPSGPRVV----GVPKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEEeCCCCceEEEEcC--CceEEEEcCCCceEE----ecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence 9999999999999877 346777876653211 1223335789999999999998888664
No 182
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=1e-16 Score=161.87 Aligned_cols=247 Identities=14% Similarity=0.287 Sum_probs=194.0
Q ss_pred eecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEec-ccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 000936 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~-~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1219)
.|++|.+.|+++.|..++. |.+|...|.|.+|++.+.+....++ .|...|+.+.--|+ ..+.+-+.|+.+.+|++.-
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 4679999999999998775 8899999999999999998888887 67888999998887 4688999999999998764
Q ss_pred CeEE--------------EEEc---------------------------------------cCCCCEEEEEEcC-CCC--
Q 000936 83 HRCL--------------FTLL---------------------------------------GHLDYIRTVQFHH-EYP-- 106 (1219)
Q Consensus 83 ~~~~--------------~~l~---------------------------------------~h~~~I~~l~fs~-d~~-- 106 (1219)
+..+ +.+. +..+.+.+..+.. ++.
T Consensus 87 s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ 166 (323)
T KOG0322|consen 87 SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF 166 (323)
T ss_pred cceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence 2211 1110 1123344444322 222
Q ss_pred EEEEEECCCeEEEEECCCCeE----------EEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCc
Q 000936 107 WIVSASDDQTIRIWNWQSRTC----------ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176 (1219)
Q Consensus 107 ~l~s~s~Dg~I~iwd~~s~~~----------i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~ 176 (1219)
+++.|..+|.+.+||+.++.. +.....|..+|+++.+.+.-+.=++|+.+..+..|++........
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq---- 242 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ---- 242 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc----
Confidence 567788899999999998733 333457999999999998767777888888899998865211110
Q ss_pred cceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEE
Q 000936 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMF 256 (1219)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~ 256 (1219)
......-...+|..+..-||++.+++++.|+.|++|+.++... +..+.-|...|.+++|
T Consensus 243 -------------------~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p--LAVLkyHsagvn~vAf 301 (323)
T KOG0322|consen 243 -------------------IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP--LAVLKYHSAGVNAVAF 301 (323)
T ss_pred -------------------ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc--hhhhhhhhcceeEEEe
Confidence 1123344567788999999999999999999999999999887 7788889999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeC
Q 000936 257 HAKQDIIVSNSEDKSIRVWDV 277 (1219)
Q Consensus 257 sp~g~~L~s~s~dg~I~iwdl 277 (1219)
+|+..++++++.|++|.+|++
T Consensus 302 spd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCCchhhhccCCceEEeeec
Confidence 999999999999999999986
No 183
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.72 E-value=3.1e-16 Score=166.68 Aligned_cols=230 Identities=16% Similarity=0.287 Sum_probs=180.5
Q ss_pred eecccCCCEEEEEEeC-CCCEEEEEECCCeEEEEECCCC-------eEEEEecccCCCEEEEEEecC-CCEEEEEECCCe
Q 000936 4 KFETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMG-------TLIDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYK 74 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fsp-dg~~Lasg~~dg~I~iWd~~~g-------~~i~~l~~h~~~V~~l~fsp~-~~~Lasgs~Dg~ 74 (1219)
.+.||+++|..++|+| +...||+|+.|.+|.||++..+ +.+..+.+|...|--++|||. .+.|+++|.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999 5678899999999999998754 446778899999999999996 458899999999
Q ss_pred EEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC-eEEEEEecCCCEEEEE
Q 000936 75 IKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHY-VMCASFHPKEDLVVSA 153 (1219)
Q Consensus 75 I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~-V~~l~~sp~~~~l~s~ 153 (1219)
|.+||+.+|+.+.++. |.+.|.++.|+.||.++++++.|..|||||..+++.+..-.+|.+. -..+.|..+++.+.+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999999988 9999999999999999999999999999999999999888777653 4567788888855555
Q ss_pred E---CCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEE-EeCCCeEE
Q 000936 154 S---LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVS-GADDRQVK 229 (1219)
Q Consensus 154 s---~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s-g~~dg~I~ 229 (1219)
. .+.++-+||........ ...--....+|.---|.++.+.+.. |-.|+.|+
T Consensus 235 fsr~seRq~aLwdp~nl~eP~-------------------------~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPI-------------------------ALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred cccccccceeccCcccccCcc-------------------------eeEEeccCCceEEeeecCCCCEEEEEecCCcceE
Confidence 3 46789999987754421 1122234556666778888877654 55799999
Q ss_pred EEECCCCCeeeEEeecC--CCCCeEEEEEccCC
Q 000936 230 LWRMNETKAWEVDTLRG--HMNNVSCVMFHAKQ 260 (1219)
Q Consensus 230 iwd~~~~~~~~~~~~~~--h~~~I~~l~~sp~g 260 (1219)
-|.+...... ++.+.. ...+-..+.|-|..
T Consensus 290 YyEit~d~P~-~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 290 YFEITNEPPF-VHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred EEEecCCCce-eEEecccccCCccccccccccc
Confidence 9999877642 222221 22344566666643
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=5.7e-16 Score=158.23 Aligned_cols=262 Identities=20% Similarity=0.360 Sum_probs=194.4
Q ss_pred CEEEEEEC----CCeEEEEECCCCe--E-EEEecccCCCEEEEEEecCC-CEEEEEECC-------CeEEEEEcCCC---
Q 000936 22 PWILASLH----SGVIQLWDYRMGT--L-IDRFDEHDGPVRGVHFHKSQ-PLFVSGGDD-------YKIKVWNYKMH--- 83 (1219)
Q Consensus 22 ~~Lasg~~----dg~I~iWd~~~g~--~-i~~l~~h~~~V~~l~fsp~~-~~Lasgs~D-------g~I~vWd~~~~--- 83 (1219)
-.+++|.. ++.|.+.++..+. + -..|..|.+.|+.++-+|.. +.|+|+..+ ..+.||.+...
T Consensus 27 icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~ 106 (370)
T KOG1007|consen 27 ICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ 106 (370)
T ss_pred eEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc
Confidence 34566643 5778877776542 2 24566788999999999954 466666442 35789987532
Q ss_pred ------eEEEEEc-cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-EEEE-----ecCCCCeEEEEEec--CCC
Q 000936 84 ------RCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC-ISVL-----TGHNHYVMCASFHP--KED 148 (1219)
Q Consensus 84 ------~~~~~l~-~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~-i~~~-----~~h~~~V~~l~~sp--~~~ 148 (1219)
+++..+. .+-+.|.|+.|.|++..+++-. |..|.+|+++.+.. +..+ ..|....++-+|+| +++
T Consensus 107 S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 107 SNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred cccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 2333443 4556899999999999888876 88999999987765 3333 23567788999998 567
Q ss_pred EEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCC-EEEEEeCCCe
Q 000936 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQ 227 (1219)
Q Consensus 149 ~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sg~~dg~ 227 (1219)
.+++.+ |++++.||+++.++.. ..-..|...|..+.|+|+.+ +|++|++||.
T Consensus 186 qv~tt~-d~tl~~~D~RT~~~~~--------------------------sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy 238 (370)
T KOG1007|consen 186 QVATTS-DSTLQFWDLRTMKKNN--------------------------SIEDAHGQRVRDLDFNPNKQHILVTCGDDGY 238 (370)
T ss_pred eEEEeC-CCcEEEEEccchhhhc--------------------------chhhhhcceeeeccCCCCceEEEEEcCCCcc
Confidence 777665 8999999999865432 13457888899999999875 6789999999
Q ss_pred EEEEECCCCCeeeEEeecCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCe-------------------------
Q 000936 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKRT------------------------- 281 (1219)
Q Consensus 228 I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~-g~~L~s~s~dg~I~iwdl~~~~------------------------- 281 (1219)
|+|||.+..+. ++..+.+|...|.++.|+|. .++|++++.|..|.+|...+-.
T Consensus 239 vriWD~R~tk~-pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kp 317 (370)
T KOG1007|consen 239 VRIWDTRKTKF-PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKP 317 (370)
T ss_pred EEEEeccCCCc-cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccc
Confidence 99999998775 58999999999999999994 5788999999999999654211
Q ss_pred ----eEEEEecCCCCEEEEEEeCCCCEE-EEEeCCC
Q 000936 282 ----GVQTFRREHDRFWILASHPEMNLL-AAGHDSG 312 (1219)
Q Consensus 282 ----~~~~~~~~~~~i~~l~~sp~~~~l-a~g~d~g 312 (1219)
.+.++..|.+.|++++||.-...+ |+-+-+|
T Consensus 318 L~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 318 LQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred ccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 234566788899999999866654 4434333
No 185
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=1.4e-15 Score=155.66 Aligned_cols=277 Identities=16% Similarity=0.246 Sum_probs=202.6
Q ss_pred CEEEEEEeC---CCCEEEEEEC----CCeEEEEECC--CCeEEEEe-cccCCCEEEEEEecCCC-----EEEEEECCCeE
Q 000936 11 RVKGLSFHS---KRPWILASLH----SGVIQLWDYR--MGTLIDRF-DEHDGPVRGVHFHKSQP-----LFVSGGDDYKI 75 (1219)
Q Consensus 11 ~V~~i~fsp---dg~~Lasg~~----dg~I~iWd~~--~g~~i~~l-~~h~~~V~~l~fsp~~~-----~Lasgs~Dg~I 75 (1219)
.+.++.||. .+-+||.|+. ++.|+|-.+. +++.+..- -.|.-|++.+.|.|+.. +|||+++ .+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--eE
Confidence 577888984 3457888864 4667776553 45544332 26999999999999873 6676665 79
Q ss_pred EEEEcCC--CeE--EEEE-----ccCCCCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCe---EEEEEecCCCCeEEEE
Q 000936 76 KVWNYKM--HRC--LFTL-----LGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRT---CISVLTGHNHYVMCAS 142 (1219)
Q Consensus 76 ~vWd~~~--~~~--~~~l-----~~h~~~I~~l~fs~d~-~~l~s~s~Dg~I~iwd~~s~~---~i~~~~~h~~~V~~l~ 142 (1219)
++|.+.. .+. ...+ ..+..++++..|+.-. ++|.++|-|-+..|||++++. ....+-.|...|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 9999863 211 1111 2356789999999754 488899999999999999863 3556778999999999
Q ss_pred EecCC-CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCC-CEEE
Q 000936 143 FHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIV 220 (1219)
Q Consensus 143 ~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~ 220 (1219)
|...+ +.+++.+.||.||+||++....... .+.-.....+...++|++.. ++++
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTI------------------------IYE~p~~~~pLlRLswnkqDpnymA 259 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTI------------------------IYEDPSPSTPLLRLSWNKQDPNYMA 259 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceE------------------------EecCCCCCCcceeeccCcCCchHHh
Confidence 99866 7899999999999999998665431 22222224567778888754 4566
Q ss_pred EEeC-CCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCee------EEEEecCCCC
Q 000936 221 SGAD-DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKRTG------VQTFRREHDR 292 (1219)
Q Consensus 221 sg~~-dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~-g~~L~s~s~dg~I~iwdl~~~~~------~~~~~~~~~~ 292 (1219)
+-.. ...|.|.|++.... ++..+++|.+.|..++|.|. ...|++++.|..+.+||+...-. +..+. ..+.
T Consensus 260 Tf~~dS~~V~iLDiR~P~t-pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~E 337 (364)
T KOG0290|consen 260 TFAMDSNKVVILDIRVPCT-PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGE 337 (364)
T ss_pred hhhcCCceEEEEEecCCCc-ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccce
Confidence 6544 45799999987654 48899999999999999995 57899999999999999975322 22222 4567
Q ss_pred EEEEEEeC-CCCEEEEEeCCCeeE
Q 000936 293 FWILASHP-EMNLLAAGHDSGMIV 315 (1219)
Q Consensus 293 i~~l~~sp-~~~~la~g~d~gi~v 315 (1219)
|..+.|++ ....++++.++.+.+
T Consensus 338 VNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 338 VNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred eeeeeecccCCCEEEEEecCeeeE
Confidence 88999996 556777777655443
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.2e-15 Score=179.54 Aligned_cols=277 Identities=21% Similarity=0.339 Sum_probs=204.7
Q ss_pred cCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeccc---CCCEEEEEEec--CCCEEEEEECCCeEEEEEc-C
Q 000936 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEH---DGPVRGVHFHK--SQPLFVSGGDDYKIKVWNY-K 81 (1219)
Q Consensus 8 h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h---~~~V~~l~fsp--~~~~Lasgs~Dg~I~vWd~-~ 81 (1219)
....-+.+.|||-.+.++++...-.|+|||++.++....|+.+ ...|+.+.+-. |..++++|+.||.|+||+- .
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3445678899999999999988889999999999999888654 45689999865 4458999999999999963 2
Q ss_pred C----CeEEEEEccC-------CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEec-CCC
Q 000936 82 M----HRCLFTLLGH-------LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHP-KED 148 (1219)
Q Consensus 82 ~----~~~~~~l~~h-------~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~-~h~~~V~~l~~sp-~~~ 148 (1219)
+ .+.+..+.+- .+.=.-+.|.....+|+++++-..|+|||.....++..+. +.+..|+++.-+. .|+
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 2 2344333221 1111346787777788888888999999998877776553 4455566665543 468
Q ss_pred EEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCC--eEEEEEcCCCC-EEEEEeCC
Q 000936 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG--VNWAAFHPTLP-LIVSGADD 225 (1219)
Q Consensus 149 ~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--V~~l~~sp~g~-~l~sg~~d 225 (1219)
.++.|..||.|++||.+...... .......|... |..+.+.+.|- .|++|+.|
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds------------------------~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDS------------------------LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred eEEEeecCCceEEeecccCCccc------------------------cceeecccCCcccceeEEeecCCCcceeeeccC
Confidence 99999999999999987643221 23345567666 99999998765 49999999
Q ss_pred CeEEEEECCCCCeeeEEeecCCC--C-CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC-------CCCEEE
Q 000936 226 RQVKLWRMNETKAWEVDTLRGHM--N-NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE-------HDRFWI 295 (1219)
Q Consensus 226 g~I~iwd~~~~~~~~~~~~~~h~--~-~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~-------~~~i~~ 295 (1219)
|.|++||++........+...|. + ..+++..|++...+++|+. +.|+||++. |+.+..++.. .+.+.+
T Consensus 1279 G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~sc 1356 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSC 1356 (1387)
T ss_pred CeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcce
Confidence 99999999984321222333332 3 5999999999999999998 899999975 4444444322 245789
Q ss_pred EEEeCCCCEEEEEeC
Q 000936 296 LASHPEMNLLAAGHD 310 (1219)
Q Consensus 296 l~~sp~~~~la~g~d 310 (1219)
++|||-.-++|+|..
T Consensus 1357 L~FHP~~~llAaG~~ 1371 (1387)
T KOG1517|consen 1357 LAFHPHRLLLAAGSA 1371 (1387)
T ss_pred eeecchhHhhhhccC
Confidence 999999999999964
No 187
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.71 E-value=2.6e-15 Score=155.84 Aligned_cols=285 Identities=17% Similarity=0.293 Sum_probs=201.8
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEEcCCC--------eE----EEEEc-cCCCCEEEEEEc-------CCCCEEEEEEC
Q 000936 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMH--------RC----LFTLL-GHLDYIRTVQFH-------HEYPWIVSASD 113 (1219)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~--------~~----~~~l~-~h~~~I~~l~fs-------~d~~~l~s~s~ 113 (1219)
..++.|+|||..|++-+.|..+.+|++... .. ..++. .....|..-+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 467899999999999999999999987421 11 11111 123456666664 56779999999
Q ss_pred CCeEEEEECCCCeEEEEEec--CCC---CeEEEEEecCCCEEEEEECCCeEEEEEC-CCCccccccCCccceeecccccc
Q 000936 114 DQTIRIWNWQSRTCISVLTG--HNH---YVMCASFHPKEDLVVSASLDQTVRVWDI-GALRKKTVSPADDILRLSQMNTD 187 (1219)
Q Consensus 114 Dg~I~iwd~~s~~~i~~~~~--h~~---~V~~l~~sp~~~~l~s~s~dg~I~vwd~-~~~~~~~~~~~~~~~~~~~~~~~ 187 (1219)
+.-|++||.-+|+....+.+ |.. ...+++|+|||..|+.|. ..+|+++|+ +.++.-...+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t------------ 198 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT------------ 198 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh------------
Confidence 99999999999998877754 333 346899999999998776 689999999 44332211110
Q ss_pred ccccccceEEEEEeecCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEE
Q 000936 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266 (1219)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~ 266 (1219)
+..-..+..+-+.+++|+|... .+++|+....+-||.-....+ +..+.+|.+.|+.+.|+++|+.|++|
T Consensus 199 --------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p--l~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 199 --------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP--LQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred --------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc--eeeecccCCCeeeEEeccCcCeeccc
Confidence 0001234467789999999654 899999999999998887776 78888999999999999999999998
Q ss_pred eC-CCcEEEEeCCCC-eeEEEEecCCC---CEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEE
Q 000936 267 SE-DKSIRVWDVTKR-TGVQTFRREHD---RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLR 341 (1219)
Q Consensus 267 s~-dg~I~iwdl~~~-~~~~~~~~~~~---~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~ 341 (1219)
+. |-.|-.||++.. .++..+.+|.+ .-.-....|++++|++|. .+|.|+
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~--------------------------tdG~V~ 322 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD--------------------------TDGSVR 322 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC--------------------------CCccEE
Confidence 74 667999999853 34444544433 112345567777887776 477899
Q ss_pred EEEecC-CcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCC
Q 000936 342 YYEFST-QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (1219)
Q Consensus 342 v~d~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~ 399 (1219)
+||+.+ +....+.... ...+..++++|-=..++++++ -++|..++.
T Consensus 323 vwdlk~~gn~~sv~~~~-------sd~vNgvslnP~mpilatssG-----qr~f~~~~d 369 (406)
T KOG2919|consen 323 VWDLKDLGNEVSVTGNY-------SDTVNGVSLNPIMPILATSSG-----QRIFKYPKD 369 (406)
T ss_pred EEecCCCCCcccccccc-------cccccceecCcccceeeeccC-----ceeecCCCc
Confidence 999988 5533332221 227888999998665555444 235555554
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=6e-16 Score=162.18 Aligned_cols=289 Identities=13% Similarity=0.217 Sum_probs=194.8
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEec--CCCEEEEEECCCeEEEEECCCCccccccCCccceeecc
Q 000936 106 PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP--KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQ 183 (1219)
Q Consensus 106 ~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 183 (1219)
..++++...|.|++||+.+++.+..++++...+..+.|.. ..+.+.+|+.||+|++||++.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~----------- 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR----------- 109 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh-----------
Confidence 4688888899999999999999999999999999999987 457899999999999999998665432
Q ss_pred ccccccccccceEEEEEeecC-CCeEEEEEcCCCCEEEEEe----CCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEcc
Q 000936 184 MNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPLIVSGA----DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1219)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~-~~V~~l~~sp~g~~l~sg~----~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp 258 (1219)
.....+. .+..+++..-.++.+++|+ .+-.|.+||.+..+...-.-...|...|+++.|+|
T Consensus 110 --------------~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 110 --------------ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred --------------eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 1223333 4566666666777888875 46789999999877532334567999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCee---EEEEecCCCCEEEEEEeCCC--CEEEEEeCCCeeEEEecCCcceEEecCCEE
Q 000936 259 -KQDIIVSNSEDKSIRVWDVTKRTG---VQTFRREHDRFWILASHPEM--NLLAAGHDSGMIVFKLERERPAFAVSGDSL 332 (1219)
Q Consensus 259 -~g~~L~s~s~dg~I~iwdl~~~~~---~~~~~~~~~~i~~l~~sp~~--~~la~g~d~gi~v~~l~~~~~~~s~~~~~l 332 (1219)
+.++|++||.||-|.+||+..... +...-.+...|..+.|+.++ ++....+..+..+|+++...+........+
T Consensus 176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~ 255 (376)
T KOG1188|consen 176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV 255 (376)
T ss_pred CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc
Confidence 568999999999999999875432 22222355668899999988 667777777776666655433211111000
Q ss_pred EEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCC---CCCCccccc
Q 000936 333 FYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDS---IGRGDSVQD 409 (1219)
Q Consensus 333 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~---~~~~~~~~~ 409 (1219)
-.. | .+.... . . .+-. ..+|.+.-+.+..+.+-+...++.+.... .......+.
T Consensus 256 ~~~--------d-----------~r~~~~-~-d-Y~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~ 312 (376)
T KOG1188|consen 256 SAD--------D-----------LRKEDN-C-D-YVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ 312 (376)
T ss_pred hhh--------h-----------HHhhhh-h-h-heee-cccCCCcceEEEeccccCceeEEEeeecccccccCcccccc
Confidence 000 0 000000 0 0 1100 23344443444444344556665554322 222222344
Q ss_pred c-ccCceeEEEEEeCCeEEEEEcCCCEEEEEecC
Q 000936 410 A-KKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK 442 (1219)
Q Consensus 410 ~-~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~ 442 (1219)
+ |...|+++.|...+.++.+|++||.+.+|..+
T Consensus 313 g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 313 GGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 4 66678899999999999999999999999864
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.7e-15 Score=160.03 Aligned_cols=283 Identities=11% Similarity=0.167 Sum_probs=205.8
Q ss_pred eecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCC------CeEEEEec-ccCCCEEEEEEecCCCEEEEEECCCeEE
Q 000936 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM------GTLIDRFD-EHDGPVRGVHFHKSQPLFVSGGDDYKIK 76 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~------g~~i~~l~-~h~~~V~~l~fsp~~~~Lasgs~Dg~I~ 76 (1219)
.+.+|.+.|.++.||.+++||++|+.|..++||++.. .+.+.... .|.+.|.|++|...++++.+|+.+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 4678999999999999999999999999999999853 34555443 4668999999999999999999999999
Q ss_pred EEEcCCCeEEEEEcc--CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEE--EEecCCCCeEEEEEecCC-CEE
Q 000936 77 VWNYKMHRCLFTLLG--HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT-CIS--VLTGHNHYVMCASFHPKE-DLV 150 (1219)
Q Consensus 77 vWd~~~~~~~~~l~~--h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~-~i~--~~~~h~~~V~~l~~sp~~-~~l 150 (1219)
.-|+++.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||..... .+. ..........++.|+|.. .+|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 999999988887752 23489999999999999999999999999987654 222 222334567789999976 678
Q ss_pred EEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 000936 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 230 (1219)
Q Consensus 151 ~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~i 230 (1219)
++.+..+-+-+||++.......... ....+......-.++.|+|+|..+++--....-.+
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~--------------------~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~ 270 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRS--------------------MFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLY 270 (609)
T ss_pred EeccccCCCCceeeccccchHHhhh--------------------ccccCcccchhhhheeeCCCCCeehhhhccCCCEE
Confidence 8899999999999986443221100 00011111222356789999999888776666778
Q ss_pred EECCCCCeeeEEeecCC------CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe-----------------------
Q 000936 231 WRMNETKAWEVDTLRGH------MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT----------------------- 281 (1219)
Q Consensus 231 wd~~~~~~~~~~~~~~h------~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~----------------------- 281 (1219)
||+.+..+. +..+... ...+.+++|..+-. +++|+.+-.|.+|.+....
T Consensus 271 ~D~~S~R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 271 FDFISQRCF-VLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred eeeecccce-eEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 888776542 3333211 12366778875544 9999999999999875311
Q ss_pred eEEEEecCCCCEEEEEEeCCCCEEEEE
Q 000936 282 GVQTFRREHDRFWILASHPEMNLLAAG 308 (1219)
Q Consensus 282 ~~~~~~~~~~~i~~l~~sp~~~~la~g 308 (1219)
.+..+++|..-+..+.|+|...+|++.
T Consensus 349 ~~~VLrGHRSv~NQVRF~~H~~~l~SS 375 (609)
T KOG4227|consen 349 ELTVLRGHRSVPNQVRFSQHNNLLVSS 375 (609)
T ss_pred eeEEEecccccccceeecCCcceEecc
Confidence 123355666666777777766666543
No 190
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.70 E-value=1.1e-15 Score=158.61 Aligned_cols=401 Identities=16% Similarity=0.209 Sum_probs=245.6
Q ss_pred EEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEE-EECCCeEEEEECCCCeEEEEEecC
Q 000936 56 GVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVS-ASDDQTIRIWNWQSRTCISVLTGH 134 (1219)
Q Consensus 56 ~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s-~s~Dg~I~iwd~~s~~~i~~~~~h 134 (1219)
-.+|||+|+++|+++.- .+.|-|..+-+..+.+. .-+.|..+.|..|.-+++. ...|+.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 36899999999999875 78888877655443332 3467888999998876655 566889999999988888888888
Q ss_pred CCCeEEEEEecCCC-EEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEc
Q 000936 135 NHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213 (1219)
Q Consensus 135 ~~~V~~l~~sp~~~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 213 (1219)
...+.+++|+|+|+ .+.+..-+-.|.||.+.+.+.. .+.-....+..++|+
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~----------------------------~~~~pK~~~kg~~f~ 142 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY----------------------------LLPHPKTNVKGYAFH 142 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeE----------------------------EecccccCceeEEEC
Confidence 88999999999995 4556667889999999874321 122234456889999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeee-EEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCC
Q 000936 214 PTLPLIVSGADDRQVKLWRMNETKAWE-VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR 292 (1219)
Q Consensus 214 p~g~~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~ 292 (1219)
|+|++.+..+.-.....+.+..-+.|. +..+.-.+-..+.+.|+|||..|++ ||.--.-.+..+. ..-.
T Consensus 143 ~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe-~~lG 212 (447)
T KOG4497|consen 143 PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYE-RGLG 212 (447)
T ss_pred CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeee-eccc
Confidence 999998887754222222222222221 2334444556788999999987765 4422111111111 1234
Q ss_pred EEEEEEeCCCCEEEEEeCCCee-EEEecCCcceEEecCCEEEEE--eCCeEEEEEecCCcceeeEeecCCCCCCCCCCCe
Q 000936 293 FWILASHPEMNLLAAGHDSGMI-VFKLERERPAFAVSGDSLFYA--KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPR 369 (1219)
Q Consensus 293 i~~l~~sp~~~~la~g~d~gi~-v~~l~~~~~~~s~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~ 369 (1219)
+..++|+|.++++++|+.+++. +.+- ..+.+.+..+-.+ .|.++.+..-++.+.. .. ...
T Consensus 213 ~k~v~wsP~~qflavGsyD~~lrvlnh----~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~------ql-------~~~ 275 (447)
T KOG4497|consen 213 LKFVEWSPCNQFLAVGSYDQMLRVLNH----FTWKPFGEFLHLCSYHDPTLHLLEKETFSIV------QL-------LHH 275 (447)
T ss_pred eeEEEeccccceEEeeccchhhhhhce----eeeeehhhhccchhccCchhhhhhhhhcchh------hh-------ccc
Confidence 7789999999999999866532 1110 0111222222111 2222111111111110 00 223
Q ss_pred EEEEccCCCEEEEEEeCCCCEEEEEEecCCCC--CCCc--cccccccCceeEEEEEeCCeEEEEEcC--CCEEEEEecCC
Q 000936 370 TLSYSPTENAVLICSDVDGGSYELYVIPKDSI--GRGD--SVQDAKKGLGGSAIFIARNRFAVLDKS--SNQVLVKNLKN 443 (1219)
Q Consensus 370 ~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~--~~~~--~~~~~~~~~i~~~~fs~d~~~l~~~~~--dg~I~Iwdl~~ 443 (1219)
+++|.|..--.-.... . =.+|....... ..+. .......-.+.-++|++|..|+++-.+ -+.+-+||+++
T Consensus 276 cLsf~p~~~~a~~~~~---s-e~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~ 351 (447)
T KOG4497|consen 276 CLSFTPTDLEAHIWEE---S-ETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN 351 (447)
T ss_pred ccccCCCccccCcccc---c-hhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh
Confidence 4556654321100000 0 01222111100 0000 001111234667999999999999773 26799999996
Q ss_pred ceeEeee-CCcceEEEEEeCCCcEEE-E-eCCeEEEEEcCCCeEEEEEec-CCeeEEEEcCCCCEEEEEeCCeEEEEe
Q 000936 444 EVVKKSI-LPIAADAIFYAGTGNLLC-R-AEDRVVIFDLQQRLVLGDLQT-PFVKYVVWSNDMESVALLSKHAIIIAS 517 (1219)
Q Consensus 444 ~~~~~i~-~~~~v~~l~~s~dg~~L~-s-~d~~I~l~dl~~~~~l~~~~~-~~v~~v~ws~dg~~la~~s~~~i~i~~ 517 (1219)
..+..+- ...+|....|.|....|+ + +...+++|.......+..... ..|..+.|..+|..++..+++.+.+..
T Consensus 352 l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc~a~ 429 (447)
T KOG4497|consen 352 LKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFCVAI 429 (447)
T ss_pred hhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCceEEEE
Confidence 5444433 333899999999865553 3 567789998877666655443 679999999999999999999977653
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.7e-16 Score=164.76 Aligned_cols=146 Identities=22% Similarity=0.393 Sum_probs=121.8
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEec--CCCEEEEEECCCeEEEEEcCCCeEEE--EEccCC-CCE
Q 000936 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK--SQPLFVSGGDDYKIKVWNYKMHRCLF--TLLGHL-DYI 96 (1219)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp--~~~~Lasgs~Dg~I~vWd~~~~~~~~--~l~~h~-~~I 96 (1219)
..+|++.++|+|++||..+|+.+..|++|...+..+.|.. ....+.+|+.||+|++||+++..... ....|. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5689999999999999999999999999999999999987 45578999999999999998765443 344555 456
Q ss_pred EEEEEcCCCCEEEEEEC----CCeEEEEECCCCeE-EEEE-ecCCCCeEEEEEecCC-CEEEEEECCCeEEEEECCCC
Q 000936 97 RTVQFHHEYPWIVSASD----DQTIRIWNWQSRTC-ISVL-TGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGAL 167 (1219)
Q Consensus 97 ~~l~fs~d~~~l~s~s~----Dg~I~iwd~~s~~~-i~~~-~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~~ 167 (1219)
.+++.+-.++.+++|+. +-.|.+||++..+. +..+ ..|...|+++.|+|+. ++|++||.||-|.+||+...
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 67777667777777754 56799999997766 5544 5799999999999976 79999999999999999764
No 192
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=8.4e-16 Score=157.03 Aligned_cols=248 Identities=19% Similarity=0.284 Sum_probs=190.2
Q ss_pred ceecccCCCEEEEEEeCCC-CEEEEEECC-------CeEEEEECCCC---------eEEEEec-ccCCCEEEEEEecCCC
Q 000936 3 TKFETKSNRVKGLSFHSKR-PWILASLHS-------GVIQLWDYRMG---------TLIDRFD-EHDGPVRGVHFHKSQP 64 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg-~~Lasg~~d-------g~I~iWd~~~g---------~~i~~l~-~h~~~V~~l~fsp~~~ 64 (1219)
..|..|.+.|..++-+|-. +.|++...+ -.+.||.+... +++..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 3567788999999999954 455555331 24789987532 3445554 5777999999999999
Q ss_pred EEEEEECCCeEEEEEcCCCeE-EEEEc-----cCCCCEEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEE-ecCC
Q 000936 65 LFVSGGDDYKIKVWNYKMHRC-LFTLL-----GHLDYIRTVQFHH--EYPWIVSASDDQTIRIWNWQSRTCISVL-TGHN 135 (1219)
Q Consensus 65 ~Lasgs~Dg~I~vWd~~~~~~-~~~l~-----~h~~~I~~l~fs~--d~~~l~s~s~Dg~I~iwd~~s~~~i~~~-~~h~ 135 (1219)
.+++-. |..|.+|++..+.. +..+. +|....++-+|+| +++.+++.+ |+++..||+++.++...+ ..|.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhc
Confidence 998876 67999999987765 33332 3556778889988 677777655 899999999988877666 4788
Q ss_pred CCeEEEEEecCC-CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcC
Q 000936 136 HYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP 214 (1219)
Q Consensus 136 ~~V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp 214 (1219)
..|..+.|+|+. .+|++|+.||.|++||.+..+. ....+.+|...|.++.|+|
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--------------------------pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--------------------------PVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--------------------------cccccCCCceEEEEEEecC
Confidence 999999999987 5788999999999999987443 2446789999999999999
Q ss_pred CC-CEEEEEeCCCeEEEEECCCCCe---------------------------eeEEeecCCCCCeEEEEEccCCC-EEEE
Q 000936 215 TL-PLIVSGADDRQVKLWRMNETKA---------------------------WEVDTLRGHMNNVSCVMFHAKQD-IIVS 265 (1219)
Q Consensus 215 ~g-~~l~sg~~dg~I~iwd~~~~~~---------------------------~~~~~~~~h~~~I~~l~~sp~g~-~L~s 265 (1219)
.- +++++|+.|..|.+|....-.. -.+.++..|...|.+++||.-.. .+++
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 54 6788999999999996532110 01345677999999999997555 5677
Q ss_pred EeCCCcEEEEeCC
Q 000936 266 NSEDKSIRVWDVT 278 (1219)
Q Consensus 266 ~s~dg~I~iwdl~ 278 (1219)
-+.||.+.|=.+.
T Consensus 349 LSYDGRviIs~V~ 361 (370)
T KOG1007|consen 349 LSYDGRVIISSVP 361 (370)
T ss_pred eccCceEEeecCC
Confidence 8999999887655
No 193
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.1e-16 Score=174.35 Aligned_cols=239 Identities=22% Similarity=0.266 Sum_probs=178.9
Q ss_pred EecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcC--------CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeE
Q 000936 46 RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK--------MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTI 117 (1219)
Q Consensus 46 ~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~--------~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I 117 (1219)
++..|...|+.+.|+|..+.|++++.||+|++|++. .-+++.++.+|.++|.|++..+++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 556799999999999999999999999999999993 236788999999999999999999999999999999
Q ss_pred EEEECCCC----------eEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeecccccc
Q 000936 118 RIWNWQSR----------TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187 (1219)
Q Consensus 118 ~iwd~~s~----------~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 187 (1219)
+.|++... .....+.||.+.|+.+++|+..+.|++++.||+++.|+.........
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f--------------- 433 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTF--------------- 433 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcccc---------------
Confidence 99966421 23456789999999999999999999999999999999876433110
Q ss_pred ccccccceEEEEEeecCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeEEeec-----CCCCCeEEEEEccCCC
Q 000936 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLR-----GHMNNVSCVMFHAKQD 261 (1219)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~-----~h~~~I~~l~~sp~g~ 261 (1219)
......+.-.++.+-.... ..++...-+.-.++++.......+.... .....+..+.++|.+.
T Consensus 434 -----------~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~ 502 (577)
T KOG0642|consen 434 -----------GEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD 502 (577)
T ss_pred -----------CCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC
Confidence 0001111222333332221 1222222222233333333221111111 1123467789999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeC
Q 000936 262 IIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1219)
Q Consensus 262 ~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d 310 (1219)
+.+++.+|+.|+++|..++..+.....|...++++++.|+|.+|++|+.
T Consensus 503 ~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~ 551 (577)
T KOG0642|consen 503 ITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH 551 (577)
T ss_pred eeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecC
Confidence 9999999999999999999999999999999999999999999999873
No 194
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.69 E-value=3.5e-15 Score=168.50 Aligned_cols=146 Identities=24% Similarity=0.229 Sum_probs=111.3
Q ss_pred hhHHhhcCCHHHHHHHHHHh----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHHHH-
Q 000936 651 FNLALESGNIQIAVASAKEI----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIA- 725 (1219)
Q Consensus 651 f~lal~~g~~~~A~~~a~~l----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~~- 725 (1219)
|..|++.||+++|......+ +-..+|.+++++|++.||+-+|+.||...++..++.||+-+ .+++..+
T Consensus 451 fgaaid~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~-------~eiadeas 523 (1636)
T KOG3616|consen 451 FGAAIDDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDI-------LEIADEAS 523 (1636)
T ss_pred cccccccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHh
Confidence 34444444444444443332 22457999999999999999999999999999999888432 2222211
Q ss_pred -HHcCCh----hHHHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q 000936 726 -EVKNDV----MGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEGKAPSLLMPPS 800 (1219)
Q Consensus 726 -~~~~~~----~~~~~~al~lgd~~eai~i~~~~g~~~~A~~la~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~p~~ 800 (1219)
+.-++- -.++..++.-.++++|+.||++++..++|+-|++.+..|++|..+++.
T Consensus 524 ~~~ggdgt~fykvra~lail~kkfk~ae~ifleqn~te~aigmy~~lhkwde~i~lae~--------------------- 582 (1636)
T KOG3616|consen 524 IEIGGDGTDFYKVRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQELHKWDEAIALAEA--------------------- 582 (1636)
T ss_pred HhhCCCCchHHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHh---------------------
Confidence 233332 344555777789999999999999999999999999999999999986
Q ss_pred CccCCCCCCcccccccccccccccCCCCC
Q 000936 801 PVVCSGDWPLLRVMKGIFEGGLDNIGRGA 829 (1219)
Q Consensus 801 ~~~~~~~wp~~~~~~~~~~~~~~~~~~~~ 829 (1219)
.|+|-++..+..|.++|+.+||.+
T Consensus 583 -----~~~p~~eklk~sy~q~l~dt~qd~ 606 (1636)
T KOG3616|consen 583 -----KGHPALEKLKRSYLQALMDTGQDE 606 (1636)
T ss_pred -----cCChHHHHHHHHHHHHHHhcCchh
Confidence 459999999999999999988855
No 195
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.69 E-value=1.4e-15 Score=161.65 Aligned_cols=243 Identities=23% Similarity=0.380 Sum_probs=178.7
Q ss_pred CEEEEEEeC-----CCCEEEEEE---CCCeEEEEEC-CCCeEE---EEecccCCCEEEEEEec-CCCEEEEEECCCeEEE
Q 000936 11 RVKGLSFHS-----KRPWILASL---HSGVIQLWDY-RMGTLI---DRFDEHDGPVRGVHFHK-SQPLFVSGGDDYKIKV 77 (1219)
Q Consensus 11 ~V~~i~fsp-----dg~~Lasg~---~dg~I~iWd~-~~g~~i---~~l~~h~~~V~~l~fsp-~~~~Lasgs~Dg~I~v 77 (1219)
+|+.++|.. +.++||+.. ..|...|--+ ++|+.- -.+.+|.++|..++|+| +...+||||+|.+|.|
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~v 108 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMV 108 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEE
Confidence 466666654 344555432 1233333322 234332 34568999999999999 5568999999999999
Q ss_pred EEcCCC-------eEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCE
Q 000936 78 WNYKMH-------RCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDL 149 (1219)
Q Consensus 78 Wd~~~~-------~~~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~ 149 (1219)
|.+..+ +++..+.+|...|-.++|||... .|++++.|.+|.+||+.+|+.+.++. |...|.++.|+.+|.+
T Consensus 109 W~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~ 187 (472)
T KOG0303|consen 109 WQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSL 187 (472)
T ss_pred EECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCce
Confidence 998543 45778899999999999999754 88999999999999999999988888 9999999999999999
Q ss_pred EEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCC-CeEEEEEcCCCCEEEEEe---CC
Q 000936 150 VVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR-GVNWAAFHPTLPLIVSGA---DD 225 (1219)
Q Consensus 150 l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~~sp~g~~l~sg~---~d 225 (1219)
+++.+.|..|||||.++++... ...+|.+ .-..+.|-.+|.++-+|. .+
T Consensus 188 l~TtckDKkvRv~dpr~~~~v~---------------------------e~~~heG~k~~Raifl~~g~i~tTGfsr~se 240 (472)
T KOG0303|consen 188 LCTTCKDKKVRVIDPRRGTVVS---------------------------EGVAHEGAKPARAIFLASGKIFTTGFSRMSE 240 (472)
T ss_pred eeeecccceeEEEcCCCCcEee---------------------------ecccccCCCcceeEEeccCceeeeccccccc
Confidence 9999999999999999866433 2234443 234566777887555543 57
Q ss_pred CeEEEEECCCCCee-eEEeecCCCCCeEEEEEccCCCEEEE-EeCCCcEEEEeCCCCee
Q 000936 226 RQVKLWRMNETKAW-EVDTLRGHMNNVSCVMFHAKQDIIVS-NSEDKSIRVWDVTKRTG 282 (1219)
Q Consensus 226 g~I~iwd~~~~~~~-~~~~~~~h~~~I~~l~~sp~g~~L~s-~s~dg~I~iwdl~~~~~ 282 (1219)
+++-+||..+-... ....+. ..+.|.---|.++.+++.. |-.|+.||-|.+.+..+
T Consensus 241 Rq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 241 RQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred cceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 88999998764432 233333 3445655667888887755 45689999999887664
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=4e-14 Score=141.50 Aligned_cols=262 Identities=19% Similarity=0.278 Sum_probs=187.4
Q ss_pred CCEEEEEEeCCCCEEEEEECCCeEEEEECCC---------C-eEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 000936 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRM---------G-TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (1219)
Q Consensus 10 ~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~---------g-~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd 79 (1219)
..|..-+|+|.+++|++|..+|.|.+..+++ | ..+-.+++|+++|..++|+ ..+|++|++ |.|+=|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEee
Confidence 3466678999999999999999999999753 2 3445568999999999998 346777766 9999998
Q ss_pred cCCCeE------EEEE--ccC-----CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecC
Q 000936 80 YKMHRC------LFTL--LGH-----LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146 (1219)
Q Consensus 80 ~~~~~~------~~~l--~~h-----~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~ 146 (1219)
+..... +... .-| -..|.++...|..+-++.++.|+.++-||+++|+...++++|+++|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 753211 1111 112 236889999988887888889999999999999999999999999999998556
Q ss_pred CCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeec-CCCeEEEEEcCCCCEEEEEeCC
Q 000936 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-DRGVNWAAFHPTLPLIVSGADD 225 (1219)
Q Consensus 147 ~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~~sp~g~~l~sg~~d 225 (1219)
...+++|++||++|+||.++.+.......-. + ...+..| ...|-+++- +..++++|+ .
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk-------~-----------~~~lRp~~g~wigala~--~edWlvCGg-G 226 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYK-------N-----------PNLLRPDWGKWIGALAV--NEDWLVCGG-G 226 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEecccc-------C-----------hhhcCcccCceeEEEec--cCceEEecC-C
Confidence 6689999999999999999977654321100 0 0011122 233555554 445788776 4
Q ss_pred CeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCC
Q 000936 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1219)
Q Consensus 226 g~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~ 301 (1219)
..+.+|+++..+...+..++ .++..+.|. .+.++++++.+.|.-|.+. |......+......++..|+..
T Consensus 227 p~lslwhLrsse~t~vfpip---a~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~ 296 (325)
T KOG0649|consen 227 PKLSLWHLRSSESTCVFPIP---ARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTS 296 (325)
T ss_pred CceeEEeccCCCceEEEecc---cceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCC
Confidence 56899999998875555555 456667775 4568888888899999874 4444444444444555555443
No 197
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=6e-17 Score=185.82 Aligned_cols=268 Identities=24% Similarity=0.399 Sum_probs=207.9
Q ss_pred EEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000936 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123 (1219)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~ 123 (1219)
++.+.+|...|.|+.|...|.++++|++|..++||..+++.++.+..||.+.|+.++.+.++.+++++|.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 44566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeec
Q 000936 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH 203 (1219)
Q Consensus 124 s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1219)
.+.++..+.+|++.|++++|+|-. +.+.||++++||.+- ......|.. .-...
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp----------------------~~~~~ 315 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRP----------------------LKFTE 315 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCC----------------------CCccc
Confidence 999999999999999999999965 778899999999872 111111100 00011
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCee
Q 000936 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKRTG 282 (1219)
Q Consensus 204 ~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g-~~L~s~s~dg~I~iwdl~~~~~ 282 (1219)
..-+.++.|..++..+.+|+.|+.-..|.+.. +..+...+.-+.++.+- .+.+++-.+-.+++|++.++..
T Consensus 316 ~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~--------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l 387 (1113)
T KOG0644|consen 316 KDLVDSILFENNGDRFLTGSRDGEARNHEFEQ--------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL 387 (1113)
T ss_pred ccceeeeeccccccccccccCCcccccchhhH--------hhhhccceEEEeccccccccceeeeeeeEeeeeecccchh
Confidence 24566778888888999999999888886542 22233333333333222 4566666778899999999999
Q ss_pred EEEEecCCCCEEEEEEeCCCCEEE--EEeCCCeeEEEecCCcc--------------eEEecCCEEEEE-eCCeEEEEEe
Q 000936 283 VQTFRREHDRFWILASHPEMNLLA--AGHDSGMIVFKLERERP--------------AFAVSGDSLFYA-KDRFLRYYEF 345 (1219)
Q Consensus 283 ~~~~~~~~~~i~~l~~sp~~~~la--~g~d~gi~v~~l~~~~~--------------~~s~~~~~l~~~-~d~~i~v~d~ 345 (1219)
.+...+|.+.++.+.+||-...++ +|.++..+||++..+.| .|+.+|..++.. .-|.+++...
T Consensus 388 ~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 388 LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEecc
Confidence 999999999999999999777655 67888999998876655 344455555444 4455554443
Q ss_pred c
Q 000936 346 S 346 (1219)
Q Consensus 346 ~ 346 (1219)
.
T Consensus 468 g 468 (1113)
T KOG0644|consen 468 G 468 (1113)
T ss_pred C
Confidence 3
No 198
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=7.4e-13 Score=151.65 Aligned_cols=420 Identities=13% Similarity=0.096 Sum_probs=258.1
Q ss_pred CCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecC------------CCEEEEEECCCeEEE
Q 000936 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS------------QPLFVSGGDDYKIKV 77 (1219)
Q Consensus 10 ~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~------------~~~Lasgs~Dg~I~v 77 (1219)
+.-.++.|+|.| .+|.|+ ...|.|-|..+-+.+..+.-|...|+.+.|.|- ..+++++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 335678899987 677775 456889999999999999999999999999762 236777888899999
Q ss_pred EEcCCCeEEEEEccCCCCEEEEEEcCC---C-CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCC-CEEEE
Q 000936 78 WNYKMHRCLFTLLGHLDYIRTVQFHHE---Y-PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVS 152 (1219)
Q Consensus 78 Wd~~~~~~~~~l~~h~~~I~~l~fs~d---~-~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~-~~l~s 152 (1219)
||...+..+..+..|.+++..++|-+. + ..|+.-....++.+||..+|+.............|+.+.|-. +.+..
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 999999888889999999999999763 3 366677778899999999999999888777778889999844 66766
Q ss_pred EECCCeEEEEECCCCccccccCCccceeecccccccc----ccccceEEEEEeecC---CCeEEEEEcCCCCEEEEEeCC
Q 000936 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLF----GGVDAVVKYVLEGHD---RGVNWAAFHPTLPLIVSGADD 225 (1219)
Q Consensus 153 ~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~V~~l~~sp~g~~l~sg~~d 225 (1219)
.+..|.+.+-+.-.......... .+.+.....+.. ....+.......... .-...++|+|.-+-++.....
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk--~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGK--EFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCce--eEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 77788888877655443322111 111111100000 000000000000000 001235678876666666677
Q ss_pred CeEEEEECCCCCeeeEEeecCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEeCCC----------------CeeEEEEe
Q 000936 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA--KQDIIVSNSEDKSIRVWDVTK----------------RTGVQTFR 287 (1219)
Q Consensus 226 g~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp--~g~~L~s~s~dg~I~iwdl~~----------------~~~~~~~~ 287 (1219)
+.+.++|+.-.....+..+. .+.+.-+.+-| +...|++...||.+.+|-.+. +.....+.
T Consensus 252 rellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr 329 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVR 329 (1062)
T ss_pred cceEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEe
Confidence 88999999887774344443 34444455555 456799999999999996543 11111111
Q ss_pred cC-CCCEEEEEEeCC-CCEEEE-EeCCCeeEEEecCCcc------------------------------eEEe-------
Q 000936 288 RE-HDRFWILASHPE-MNLLAA-GHDSGMIVFKLERERP------------------------------AFAV------- 327 (1219)
Q Consensus 288 ~~-~~~i~~l~~sp~-~~~la~-g~d~gi~v~~l~~~~~------------------------------~~s~------- 327 (1219)
.. .-++......|. .+.++. -+++...+|.+..++. .++.
T Consensus 330 ~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sG 409 (1062)
T KOG1912|consen 330 PMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSG 409 (1062)
T ss_pred echhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCC
Confidence 11 111122222222 111111 1222233333332111 0000
Q ss_pred -------------------cC-------CEEEEE-eCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEE
Q 000936 328 -------------------SG-------DSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAV 380 (1219)
Q Consensus 328 -------------------~~-------~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l 380 (1219)
.+ ..++++ ..|+|.++|+.++....-+.++. + .|.++.|....+.+
T Consensus 410 s~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht----~---~VkgleW~g~sslv 482 (1062)
T KOG1912|consen 410 STCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHT----S---LVKGLEWLGNSSLV 482 (1062)
T ss_pred ceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccc----c---ceeeeeeccceeEE
Confidence 11 134555 89999999999876544333322 2 77778777655533
Q ss_pred EEEEeCCC-------CEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC
Q 000936 381 LICSDVDG-------GSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK 442 (1219)
Q Consensus 381 lv~~~~~d-------g~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~ 442 (1219)
-..+..-+ +.+.+-+++................+|+.+..+.-++|++..-.+.-+.+||++
T Consensus 483 Sfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 483 SFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLK 551 (1062)
T ss_pred EeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhc
Confidence 33222111 234455665544333322234455689999999999999999999999999985
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=1.3e-13 Score=159.23 Aligned_cols=260 Identities=13% Similarity=0.155 Sum_probs=171.9
Q ss_pred EEEECCCeEEEEECCC-Ce--EEEEecccCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcC-CCeE--EEEEccCCCCEE
Q 000936 25 LASLHSGVIQLWDYRM-GT--LIDRFDEHDGPVRGVHFHKSQPLFVSGG-DDYKIKVWNYK-MHRC--LFTLLGHLDYIR 97 (1219)
Q Consensus 25 asg~~dg~I~iWd~~~-g~--~i~~l~~h~~~V~~l~fsp~~~~Lasgs-~Dg~I~vWd~~-~~~~--~~~l~~h~~~I~ 97 (1219)
++...++.|.+|++.+ |+ .+.++. +.+....++++|++++|++++ .++.|.+|+++ +++. +.... ..+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 3346789999999964 43 455554 345677899999999887664 57899999996 3432 22222 334567
Q ss_pred EEEEcCCCCEEEEEEC-CCeEEEEECCC-C---eEEEEEecCCCCeEEEEEecCCCEEEEEE-CCCeEEEEECCCCcccc
Q 000936 98 TVQFHHEYPWIVSASD-DQTIRIWNWQS-R---TCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDIGALRKKT 171 (1219)
Q Consensus 98 ~l~fs~d~~~l~s~s~-Dg~I~iwd~~s-~---~~i~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~I~vwd~~~~~~~~ 171 (1219)
.+.|+|+++++++++. ++.|.+|++.+ + +.+..+. +.....+++++|+++++++++ .++.|.+||+.+.....
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 8999999998888765 78999999864 3 2233333 233467788999998886555 56999999997632111
Q ss_pred ccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCC--CCeeeEEeecCC-
Q 000936 172 VSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD-DRQVKLWRMNE--TKAWEVDTLRGH- 247 (1219)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~-dg~I~iwd~~~--~~~~~~~~~~~h- 247 (1219)
.... ..... ........++|+|+|++++++.. ++.|.+|+++. ++...+..+..+
T Consensus 163 ~~~~--------------------~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p 221 (330)
T PRK11028 163 AQEP--------------------AEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP 221 (330)
T ss_pred ccCC--------------------Cceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC
Confidence 0000 00001 11234567899999999988876 89999999974 332223333221
Q ss_pred -----CCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCee----EEEEecCCCCEEEEEEeCCCCEEEEEe
Q 000936 248 -----MNNVSCVMFHAKQDIIVSNSE-DKSIRVWDVTKRTG----VQTFRREHDRFWILASHPEMNLLAAGH 309 (1219)
Q Consensus 248 -----~~~I~~l~~sp~g~~L~s~s~-dg~I~iwdl~~~~~----~~~~~~~~~~i~~l~~sp~~~~la~g~ 309 (1219)
......+.++|++++++++.. +++|.+|++..... +..... ....+.+.++|+|++++++.
T Consensus 222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEE
Confidence 122346889999999988854 68999999865432 222222 23456788899998888765
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=4.2e-14 Score=141.36 Aligned_cols=282 Identities=17% Similarity=0.226 Sum_probs=189.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCC----------CeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECC
Q 000936 96 IRTVQFHHEYPWIVSASDDQTIRIWNWQS----------RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (1219)
Q Consensus 96 I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s----------~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~ 165 (1219)
|..-+|+|.+++|+.|+.+|+|.+..+.+ ...+...++|.+++..++|+ .++|++|+ ||.|+-|..+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence 45567899999999999999999998753 23445568999999999999 45677776 6999999876
Q ss_pred CCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeec
Q 000936 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR 245 (1219)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~ 245 (1219)
...+..... ..... .. ...+-...-..|+++...|..+.++.++.|+.++-||+.+++. ..+++
T Consensus 90 E~~es~~~K--~lwe~--~~----------P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i--~r~~r 153 (325)
T KOG0649|consen 90 EEEESLATK--RLWEV--KI----------PMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI--QREYR 153 (325)
T ss_pred hhhhhccch--hhhhh--cC----------ccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE--EEEEc
Confidence 644311000 00000 00 0000011234689999999888888888999999999999998 78999
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCC--------EEEEEEeCCCCEEEEEeCCCeeEEE
Q 000936 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR--------FWILASHPEMNLLAAGHDSGMIVFK 317 (1219)
Q Consensus 246 ~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~--------i~~l~~sp~~~~la~g~d~gi~v~~ 317 (1219)
+|++-|.++.--.....+++|++||++|+||.++++.++.+.....+ -|..+..-+...+++
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvC---------- 223 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVC---------- 223 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEe----------
Confidence 99999999998555667999999999999999999998877533221 122222223333444
Q ss_pred ecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEec
Q 000936 318 LERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1219)
Q Consensus 318 l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~ 397 (1219)
+....+.+|++.+.+...+++++. ++..+.|-.| .+++++ ++..+.-|.+.
T Consensus 224 -----------------GgGp~lslwhLrsse~t~vfpipa--------~v~~v~F~~d--~vl~~G--~g~~v~~~~l~ 274 (325)
T KOG0649|consen 224 -----------------GGGPKLSLWHLRSSESTCVFPIPA--------RVHLVDFVDD--CVLIGG--EGNHVQSYTLN 274 (325)
T ss_pred -----------------cCCCceeEEeccCCCceEEEeccc--------ceeEeeeecc--eEEEec--cccceeeeeec
Confidence 446678889999888888888775 6667777655 344433 45688888876
Q ss_pred CCCCCCCccccccccCceeEEEEEeC-CeEEEEEcCCCEEEEE
Q 000936 398 KDSIGRGDSVQDAKKGLGGSAIFIAR-NRFAVLDKSSNQVLVK 439 (1219)
Q Consensus 398 ~~~~~~~~~~~~~~~~~i~~~~fs~d-~~~l~~~~~dg~I~Iw 439 (1219)
+.-. ...+.......+..|... -+++..++....+.|+
T Consensus 275 Gvl~----a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 275 GVLQ----ANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cEEE----EeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 4311 111222222344444422 3566555545555543
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=7.5e-15 Score=172.86 Aligned_cols=245 Identities=18% Similarity=0.238 Sum_probs=185.2
Q ss_pred CCCEEEEEEeC-CCCEEEEEECCCeEEEEECCCCeE--EEEe----cccCCCEEEEEEecCC--CEEEEEECCCeEEEEE
Q 000936 9 SNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMGTL--IDRF----DEHDGPVRGVHFHKSQ--PLFVSGGDDYKIKVWN 79 (1219)
Q Consensus 9 ~~~V~~i~fsp-dg~~Lasg~~dg~I~iWd~~~g~~--i~~l----~~h~~~V~~l~fsp~~--~~Lasgs~Dg~I~vWd 79 (1219)
...|+|+.|+| +..+++.|+.+|.|.+||++.+.. ...+ ..|..+|+.+.|..+- .-|++++.||.|+.|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 46799999999 556777788899999999987654 2222 3699999999997643 4599999999999998
Q ss_pred cCCCeE------EEEEc------cCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCe--------EEEEEecCCCCe
Q 000936 80 YKMHRC------LFTLL------GHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRT--------CISVLTGHNHYV 138 (1219)
Q Consensus 80 ~~~~~~------~~~l~------~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~--------~i~~~~~h~~~V 138 (1219)
++.-.. ..... .....++++.|.+..+ .++.|+++|.|..-+....+ ....+..|.++|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 763221 11111 1234689999998765 78899999999874433221 233556789999
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCC-
Q 000936 139 MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP- 217 (1219)
Q Consensus 139 ~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~- 217 (1219)
.++.++|-+..++..+.|.+|++|....... ..+.+..+...|++++|||..+
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~--------------------------Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS--------------------------PLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCC--------------------------cchhhhhccceeeeeEEcCcCce
Confidence 9999999886555555599999999763111 2234455666799999999875
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000936 218 LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1219)
Q Consensus 218 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~ 279 (1219)
.|+++..||.+.+||+......++.+..-+....+.+.|++.|+.|++|...|++.+|++..
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 56777789999999998777666766666667778889999999999999999999999864
No 202
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.2e-14 Score=153.66 Aligned_cols=258 Identities=18% Similarity=0.242 Sum_probs=176.0
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECC------CCeEEEEEe-cCCCCeEEEEEecCCCEEEEEECCCeE
Q 000936 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ------SRTCISVLT-GHNHYVMCASFHPKEDLVVSASLDQTV 159 (1219)
Q Consensus 87 ~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~------s~~~i~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~I 159 (1219)
..+.+|.+.|.++.|+.+++||++|++|..+++|++. +.+++.... .|.+.|.|++|......+.+|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 3456899999999999999999999999999999985 345565554 355889999999888999999999999
Q ss_pred EEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-e
Q 000936 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-A 238 (1219)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~-~ 238 (1219)
...|+.+.+...+ .......+.|..+..+|..+.+++.+.++.|.+||.+... .
T Consensus 130 I~HDiEt~qsi~V-------------------------~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 130 IKHDIETKQSIYV-------------------------ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred Eeeecccceeeee-------------------------ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC
Confidence 9999988543321 1122334589999999999999999999999999998765 2
Q ss_pred eeEEeecCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCee-EEE------EecCCCCEEEEEEeCCCCEEEEEeC
Q 000936 239 WEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKRTG-VQT------FRREHDRFWILASHPEMNLLAAGHD 310 (1219)
Q Consensus 239 ~~~~~~~~h~~~I~~l~~sp~-g~~L~s~s~dg~I~iwdl~~~~~-~~~------~~~~~~~i~~l~~sp~~~~la~g~d 310 (1219)
.....+.........+.|+|. ..+|++.++.+-+-+||.+.... +.. ++.......++.|+|+|+.+.+-..
T Consensus 185 ~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 185 ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred CceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 223334445567788999995 46788888888999999875432 111 1111223356778888876654332
Q ss_pred CCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecC-C-CCCCCCCCCeEEEEccCCCEEEEEEeCCC
Q 000936 311 SGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRR-P-GSTSLNQSPRTLSYSPTENAVLICSDVDG 388 (1219)
Q Consensus 311 ~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~-~-~~~~~~~~i~~l~~spdg~~llv~~~~~d 388 (1219)
+. .-.+||+.+.+. +++.... . |- .-...+.+++|--|-. +.+++++
T Consensus 265 ~~--------------------------~P~~~D~~S~R~-~V~k~D~N~~GY-~N~~T~KS~~F~~D~~---v~tGSD~ 313 (609)
T KOG4227|consen 265 GK--------------------------CPLYFDFISQRC-FVLKSDHNPNGY-CNIKTIKSMTFIDDYT---VATGSDH 313 (609)
T ss_pred cC--------------------------CCEEeeeecccc-eeEeccCCCCcc-eeeeeeeeeeeeccee---eeccCcc
Confidence 11 111333333221 1111110 0 00 0001566677776533 4556678
Q ss_pred CEEEEEEecCCC
Q 000936 389 GSYELYVIPKDS 400 (1219)
Q Consensus 389 g~i~l~~~~~~~ 400 (1219)
-.+.+|.++...
T Consensus 314 ~~i~~WklP~~~ 325 (609)
T KOG4227|consen 314 WGIHIWKLPRAN 325 (609)
T ss_pred cceEEEecCCCc
Confidence 889999998654
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=2e-13 Score=145.03 Aligned_cols=238 Identities=16% Similarity=0.265 Sum_probs=181.1
Q ss_pred CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEE
Q 000936 51 DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD--QTIRIWNWQSRTCI 128 (1219)
Q Consensus 51 ~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~D--g~I~iwd~~s~~~i 128 (1219)
...+..+.|+.+...|..|+.|| .++++................|.-+-|+.. +++..+.+ ..+++.+...+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceE
Confidence 44567778999998999999987 678877654432222223335666667654 55555544 45999999988888
Q ss_pred EEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeE
Q 000936 129 SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (1219)
Q Consensus 129 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 208 (1219)
+.+. ....|.++.++. +.|+++-.+ .|.|||+++.+...... ....+..++.
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~------------------------t~~~n~~gl~ 133 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIE------------------------TTPPNPKGLC 133 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhh------------------------ccCCCccceE
Confidence 8877 457799999974 456655544 49999999877654321 2334666777
Q ss_pred EEEEcCCCCEEEEEe--CCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCc-EEEEeCCCCeeEEE
Q 000936 209 WAAFHPTLPLIVSGA--DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS-IRVWDVTKRTGVQT 285 (1219)
Q Consensus 209 ~l~~sp~g~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~-I~iwdl~~~~~~~~ 285 (1219)
.+++++.+.+++--+ ..|.|.+||..+-+. +..+..|.+++.+++|+++|.+||++|+.|+ |||+.+.+|+.+.+
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~--v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQP--VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEccccee--eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 788887777887543 478999999998886 8888999999999999999999999999997 79999999999999
Q ss_pred EecCCC--CEEEEEEeCCCCEEEEEe-CCCeeEEEecCC
Q 000936 286 FRREHD--RFWILASHPEMNLLAAGH-DSGMIVFKLERE 321 (1219)
Q Consensus 286 ~~~~~~--~i~~l~~sp~~~~la~g~-d~gi~v~~l~~~ 321 (1219)
|++... .|.+++|+|++++|++.+ .+.+.+|+++..
T Consensus 212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 997654 588999999999998765 556779998753
No 204
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.64 E-value=6.1e-14 Score=165.22 Aligned_cols=279 Identities=15% Similarity=0.160 Sum_probs=198.8
Q ss_pred CeEEEEEcCCC-eEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeE--EEE----EecCCCCeEEEEEe
Q 000936 73 YKIKVWNYKMH-RCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTC--ISV----LTGHNHYVMCASFH 144 (1219)
Q Consensus 73 g~I~vWd~~~~-~~~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~--i~~----~~~h~~~V~~l~~s 144 (1219)
+.+.||++++. .+-..+. -...|+++.|+|..+ .++.|+.+|.|.+||+..+.. ... ...|..+++.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999876 3333333 567899999999766 777888899999999987654 222 24688999999997
Q ss_pred cCCC--EEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCC-CEEEE
Q 000936 145 PKED--LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVS 221 (1219)
Q Consensus 145 p~~~--~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~s 221 (1219)
.+.. -+++++.||.|..|+++.............. . .+..-......++++.|.+.. ..+++
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~--------------~-~~~~~~~~~~~~t~~~F~~~~p~~FiV 365 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK--------------K-HKGQQSSKAVGATSLKFEPTDPNHFIV 365 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccc--------------c-ccccccccccceeeEeeccCCCceEEE
Confidence 7554 4999999999999988765442211000000 0 000011234568889998854 57899
Q ss_pred EeCCCeEEEEECCCCCeee------EEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEEEecCCCCEE
Q 000936 222 GADDRQVKLWRMNETKAWE------VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT-KRTGVQTFRREHDRFW 294 (1219)
Q Consensus 222 g~~dg~I~iwd~~~~~~~~------~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~-~~~~~~~~~~~~~~i~ 294 (1219)
|+++|.|.--+....+... ......|.++|+++.++|-+..++..+.|.+++||... ...++..+..+.+.++
T Consensus 366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~ 445 (555)
T KOG1587|consen 366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVT 445 (555)
T ss_pred EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceee
Confidence 9999998874433322211 34566789999999999988777666669999999987 6677777777888899
Q ss_pred EEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEc
Q 000936 295 ILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYS 374 (1219)
Q Consensus 295 ~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 374 (1219)
+++|||....+.+..+ .+|.+.+||+......++...+... . ..+.+.|+
T Consensus 446 ~vaWSptrpavF~~~d-------------------------~~G~l~iWDLl~~~~~Pv~s~~~~~--~---~l~~~~~s 495 (555)
T KOG1587|consen 446 DVAWSPTRPAVFATVD-------------------------GDGNLDIWDLLQDDEEPVLSQKVCS--P---ALTRVRWS 495 (555)
T ss_pred eeEEcCcCceEEEEEc-------------------------CCCceehhhhhccccCCcccccccc--c---ccceeecC
Confidence 9999997765443332 4788999999987777766665432 2 66778899
Q ss_pred cCCCEEEEEEeCCCCEEEEEEecCC
Q 000936 375 PTENAVLICSDVDGGSYELYVIPKD 399 (1219)
Q Consensus 375 pdg~~llv~~~~~dg~i~l~~~~~~ 399 (1219)
+.|+.+++ +...|.+.+|++...
T Consensus 496 ~~g~~lav--Gd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 496 PNGKLLAV--GDANGTTHILKLSES 518 (555)
T ss_pred CCCcEEEE--ecCCCcEEEEEcCch
Confidence 98985543 556899999998643
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.7e-14 Score=166.30 Aligned_cols=292 Identities=16% Similarity=0.258 Sum_probs=200.8
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCC---CCEEEEEEcCCC--CEEEEEECCCeEEEEECC---
Q 000936 52 GPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL---DYIRTVQFHHEY--PWIVSASDDQTIRIWNWQ--- 123 (1219)
Q Consensus 52 ~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~---~~I~~l~fs~d~--~~l~s~s~Dg~I~iwd~~--- 123 (1219)
.+-..+.|+|-.+.++++.+.-.|+|||++.++++..+..+. ..|+.+.+-.+. ..+++|+.||.|+||+--
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 345778999999999999988899999999999888775443 478888887643 489999999999999632
Q ss_pred --CCeEEEEEecC-------CCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccc
Q 000936 124 --SRTCISVLTGH-------NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDA 194 (1219)
Q Consensus 124 --s~~~i~~~~~h-------~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1219)
..+.+..+.+- .+.=.-+.|.....+|++++.-..|+|||.........
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d---------------------- 1202 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD---------------------- 1202 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee----------------------
Confidence 22344333221 11113466777666777777789999999987444322
Q ss_pred eEEEEEeecCCCeEEEEEc-CCCCEEEEEeCCCeEEEEECCCCCe-eeEEeecCCCCC--eEEEEEccCCCE-EEEEeCC
Q 000936 195 VVKYVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETKA-WEVDTLRGHMNN--VSCVMFHAKQDI-IVSNSED 269 (1219)
Q Consensus 195 ~~~~~~~~~~~~V~~l~~s-p~g~~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~h~~~--I~~l~~sp~g~~-L~s~s~d 269 (1219)
...+....|+++.-+ +.|+.++.|..||.|++||.+.... ..+...+.|+.. |..+.+.+.|-- |++|+.+
T Consensus 1203 ----iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1203 ----IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred ----cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence 222344556665544 3478999999999999999886432 236677888887 999999987654 9999999
Q ss_pred CcEEEEeCCCCeeE--EEEecCC--C-CEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEE
Q 000936 270 KSIRVWDVTKRTGV--QTFRREH--D-RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYE 344 (1219)
Q Consensus 270 g~I~iwdl~~~~~~--~~~~~~~--~-~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d 344 (1219)
|.|++||++..... .++..+. + ..+++..|++...+|+|+...+.||++..+.. +.++
T Consensus 1279 G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l--------------~~~k--- 1341 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQL--------------NIIK--- 1341 (1387)
T ss_pred CeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhh--------------cccc---
Confidence 99999999874221 1222222 3 48999999999999999865555555443321 0111
Q ss_pred ecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCC
Q 000936 345 FSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (1219)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~ 399 (1219)
... .+.-+ . .+.+.+++|+|..-.+ +.++.|.+|.||..++.
T Consensus 1342 ~n~-----~F~~q-----~-~gs~scL~FHP~~~ll--AaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1342 YNP-----GFMGQ-----R-IGSVSCLAFHPHRLLL--AAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCc-----ccccC-----c-CCCcceeeecchhHhh--hhccCCceEEEeecCCc
Confidence 000 01011 1 2377899999975433 34467889999987754
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=2.2e-14 Score=149.26 Aligned_cols=249 Identities=18% Similarity=0.245 Sum_probs=198.5
Q ss_pred ecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC---eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000936 47 FDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH---RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123 (1219)
Q Consensus 47 l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~---~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~ 123 (1219)
+.--..+|+|.+|++|+..+|++.....|.||..... +..+++..|...|+.++|+|.++.|++++.|..-++|...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3334678999999999999999999999999987543 5788999999999999999999999999999999999983
Q ss_pred C-C--eEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEE
Q 000936 124 S-R--TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1219)
Q Consensus 124 s-~--~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1219)
+ + ++...+..++...+++.|+|.++.+++||....|.||-.+....- .+.+.+-
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW-----------------------WVsKhik 142 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW-----------------------WVSKHIK 142 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce-----------------------ehhhhhC
Confidence 3 3 455566779999999999999999999999999999987653211 0112234
Q ss_pred eecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-----CC---Ceee--------EEeecCCCCCeEEEEEccCCCEEE
Q 000936 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN-----ET---KAWE--------VDTLRGHMNNVSCVMFHAKQDIIV 264 (1219)
Q Consensus 201 ~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~-----~~---~~~~--------~~~~~~h~~~I~~l~~sp~g~~L~ 264 (1219)
..+.+.|+++.|+|++-++++|+.|+..+++..- +. ..|. +..+....+.+..+.|+|+|..|+
T Consensus 143 kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la 222 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA 222 (361)
T ss_pred CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence 4567889999999999999999999999998642 11 1110 222334567899999999999999
Q ss_pred EEeCCCcEEEEeCCCCe-eEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEe
Q 000936 265 SNSEDKSIRVWDVTKRT-GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1219)
Q Consensus 265 s~s~dg~I~iwdl~~~~-~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l 318 (1219)
-.+.|+++.+-|..... .++......-+..++.|-.+...+++|.+.+-++|..
T Consensus 223 wv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~ 277 (361)
T KOG1523|consen 223 WVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFVT 277 (361)
T ss_pred EecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCCceEEEe
Confidence 99999999999977654 4555555567888999998888888888766555443
No 207
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.6e-15 Score=165.58 Aligned_cols=301 Identities=16% Similarity=0.233 Sum_probs=227.8
Q ss_pred cceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEec-ccCCCEEEEEEecC--CCEEEEEECCCeEEEE
Q 000936 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVHFHKS--QPLFVSGGDDYKIKVW 78 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~-~h~~~V~~l~fsp~--~~~Lasgs~Dg~I~vW 78 (1219)
..+|.+|.+.|..+.|+..|.+|++|+.|..|.+||+..+.....|. +|...|..-.|-|. ..-+++++.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 46899999999999999999999999999999999999998887774 79999988889884 4579999999999988
Q ss_pred EcCC-CeE--EEEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEE---ecCCC---CeEEEEEecCC-
Q 000936 79 NYKM-HRC--LFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVL---TGHNH---YVMCASFHPKE- 147 (1219)
Q Consensus 79 d~~~-~~~--~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~---~~h~~---~V~~l~~sp~~- 147 (1219)
.+.. +.+ ...+..|.++|.-++.-|+.+ -|.+++.|+.+.-.|+.++.....+ ..+.. ....++.+|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 7643 322 234567999999999999887 6889999999999999876543333 22333 46778888876
Q ss_pred CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCe
Q 000936 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 227 (1219)
Q Consensus 148 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~ 227 (1219)
..+++++.|..+++||.+............ ..............|++++|+.++.-+.+...|-.
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~---------------~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLD---------------KFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhh---------------hcCCccccccCcccceeEEecCCccceeeeecccc
Confidence 489999999999999998755432111000 00001112234567999999988877777788888
Q ss_pred EEEEECCCCCe-----------eeEEeecCCCCC--eEEEEE-ccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCE
Q 000936 228 VKLWRMNETKA-----------WEVDTLRGHMNN--VSCVMF-HAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRF 293 (1219)
Q Consensus 228 I~iwd~~~~~~-----------~~~~~~~~h~~~--I~~l~~-sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i 293 (1219)
|+++.-.-+.. .....++||.+. |.++-| -|...++++||.-|.|.||+-.+++.++-+.+...-|
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VV 439 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVV 439 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceE
Confidence 99995432211 111226788764 556654 6889999999999999999999999988888877789
Q ss_pred EEEEEeCCCCEEEEEe-CCCeeEEE
Q 000936 294 WILASHPEMNLLAAGH-DSGMIVFK 317 (1219)
Q Consensus 294 ~~l~~sp~~~~la~g~-d~gi~v~~ 317 (1219)
.|+.-||--.+||+.. +..+.||.
T Consensus 440 NCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 440 NCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred eccCCCCCCchhhccCCccceeeec
Confidence 9999999988888654 44444443
No 208
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.63 E-value=2.2e-11 Score=147.38 Aligned_cols=304 Identities=13% Similarity=0.115 Sum_probs=175.3
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE
Q 000936 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~ 88 (1219)
++.|.++.|.-+..-++++...|.|.+-|.++.... ....-++.|.+++||||+..++..+..+++.+-+. +..++..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhc
Confidence 468999999999999999999999999997766432 22235678999999999999999988877776542 2222222
Q ss_pred EccC-----CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEecCCCEEEEE-----ECCC
Q 000936 89 LLGH-----LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHPKEDLVVSA-----SLDQ 157 (1219)
Q Consensus 89 l~~h-----~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~-~~i~~~~~h~~~V~~l~~sp~~~~l~s~-----s~dg 157 (1219)
-.-+ .+..-.+-|-...+.+ .|+ .|...-.+.... +......-+++ =+++.|--||.++++. ...+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~~~-~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIEQDDH-KTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred cccccccccccccceecccccceee-ecc-hhhhcccccccccccccchhhccC-CceEEEccCCcEEEEEEEeccCCce
Confidence 1111 1112223332221111 111 111111110000 00011112222 2468999999998883 2237
Q ss_pred eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECC
Q 000936 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA---DDRQVKLWRMN 234 (1219)
Q Consensus 158 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~---~dg~I~iwd~~ 234 (1219)
.|+|||-.+ .... .-....+--.+++|-|.|.++++-. +|+.|.++..+
T Consensus 223 kirV~drEg-~Lns---------------------------~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 223 KIRVYDREG-ALNS---------------------------TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred eEEEecccc-hhhc---------------------------ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence 899999763 2111 1112233345789999999888754 45679999877
Q ss_pred CCCeee-EEeecCCCCCeEEEEEccCCCEEEE---EeCCCcEEEEeCCCCee--EEEEecCCCCEEEEEEeCCC--CEEE
Q 000936 235 ETKAWE-VDTLRGHMNNVSCVMFHAKQDIIVS---NSEDKSIRVWDVTKRTG--VQTFRREHDRFWILASHPEM--NLLA 306 (1219)
Q Consensus 235 ~~~~~~-~~~~~~h~~~I~~l~~sp~g~~L~s---~s~dg~I~iwdl~~~~~--~~~~~~~~~~i~~l~~sp~~--~~la 306 (1219)
+-..-+ ...+......+..++|+.++..|++ ......|++|-+.+..- .+.+....... +.|+|.. ++.+
T Consensus 275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v 352 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHV 352 (1265)
T ss_pred CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEE
Confidence 644211 1122223344899999999999988 45555699999876542 22233232222 7888843 3344
Q ss_pred EEeCCCeeEEEecCCcceE-EecCCEEEEEeCCeEEEEEecCC
Q 000936 307 AGHDSGMIVFKLERERPAF-AVSGDSLFYAKDRFLRYYEFSTQ 348 (1219)
Q Consensus 307 ~g~d~gi~v~~l~~~~~~~-s~~~~~l~~~~d~~i~v~d~~~~ 348 (1219)
.+.++...++++.-.. .+ ..+++..++..++.+.+.++...
T Consensus 353 ~~~sG~~~v~~~~~~t-~~s~~d~S~~~VIDgs~llvT~ls~~ 394 (1265)
T KOG1920|consen 353 LRESGQRLVRDFAWTT-DRSPNDGSTVYVIDGSRLLVTPLSLA 394 (1265)
T ss_pred EecCCcEEEEEEEEee-eccCCCCceEEEEeCCEEEEecchhh
Confidence 4433333333332111 12 23445566668888888887653
No 209
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.63 E-value=1e-12 Score=151.90 Aligned_cols=275 Identities=12% Similarity=0.132 Sum_probs=177.1
Q ss_pred EEEEECCCeEEEEEcCC-Ce--EEEEEccCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEECC-CCeE--EEEEecCCCCe
Q 000936 66 FVSGGDDYKIKVWNYKM-HR--CLFTLLGHLDYIRTVQFHHEYPWIVSAS-DDQTIRIWNWQ-SRTC--ISVLTGHNHYV 138 (1219)
Q Consensus 66 Lasgs~Dg~I~vWd~~~-~~--~~~~l~~h~~~I~~l~fs~d~~~l~s~s-~Dg~I~iwd~~-s~~~--i~~~~~h~~~V 138 (1219)
+++...++.|.+|++.+ ++ .+.++. +.+....++++|++++|++++ .++.|.+|++. +++. +.... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 34446789999999964 33 445554 446678899999999887764 47889999986 3432 22222 23356
Q ss_pred EEEEEecCCCEEEEEEC-CCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCC
Q 000936 139 MCASFHPKEDLVVSASL-DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP 217 (1219)
Q Consensus 139 ~~l~~sp~~~~l~s~s~-dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~ 217 (1219)
..+.|+|+++++++++. ++.|.+|++........ ..... .+......++++|+++
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~-----------------------~~~~~-~~~~~~~~~~~~p~g~ 138 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA-----------------------PIQII-EGLEGCHSANIDPDNR 138 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC-----------------------ceeec-cCCCcccEeEeCCCCC
Confidence 78999999998888764 88999999864221100 00011 1223466788999998
Q ss_pred EEEEE-eCCCeEEEEECCCCCeee-----EEeecCCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCC--C--eeEEEE
Q 000936 218 LIVSG-ADDRQVKLWRMNETKAWE-----VDTLRGHMNNVSCVMFHAKQDIIVSNSE-DKSIRVWDVTK--R--TGVQTF 286 (1219)
Q Consensus 218 ~l~sg-~~dg~I~iwd~~~~~~~~-----~~~~~~h~~~I~~l~~sp~g~~L~s~s~-dg~I~iwdl~~--~--~~~~~~ 286 (1219)
+++++ ..++.|.+||+.+..... ..... .......+.|+|+|++++++.+ +++|.+|++.. + +.++.+
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE
Confidence 88554 467999999998643210 01111 1234678999999999988876 89999999973 2 223333
Q ss_pred ecCC------CCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCc-ceeeEeecCC
Q 000936 287 RREH------DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQK-DTQVIPIRRP 359 (1219)
Q Consensus 287 ~~~~------~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~-~~~~~~~~~~ 359 (1219)
.... .....+.++|+++++.++.. .++.|.+|++.... ..........
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-------------------------~~~~I~v~~i~~~~~~~~~~~~~~~ 272 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPDGRHLYACDR-------------------------TASLISVFSVSEDGSVLSFEGHQPT 272 (330)
T ss_pred ecCCCcCCCCccceeEEECCCCCEEEEecC-------------------------CCCeEEEEEEeCCCCeEEEeEEEec
Confidence 2211 11224777888887776632 24567777775432 1111111111
Q ss_pred CCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecC
Q 000936 360 GSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1219)
Q Consensus 360 ~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~ 398 (1219)
+. .+..+.++|+|++++++.. .++++.+|.++.
T Consensus 273 ~~-----~p~~~~~~~dg~~l~va~~-~~~~v~v~~~~~ 305 (330)
T PRK11028 273 ET-----QPRGFNIDHSGKYLIAAGQ-KSHHISVYEIDG 305 (330)
T ss_pred cc-----cCCceEECCCCCEEEEEEc-cCCcEEEEEEcC
Confidence 11 5667999999999888764 567999999864
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3.1e-14 Score=169.66 Aligned_cols=233 Identities=13% Similarity=0.062 Sum_probs=168.7
Q ss_pred CCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECC---CeEEEEEcCCCeE--EEEEccCCCCEEEEEEcCC
Q 000936 30 SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---YKIKVWNYKMHRC--LFTLLGHLDYIRTVQFHHE 104 (1219)
Q Consensus 30 dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D---g~I~vWd~~~~~~--~~~l~~h~~~I~~l~fs~d 104 (1219)
+..|.+||+.... ...+..|...+.+.+|||||+.|+.++.+ ..|.+||+.+++. +..+.+| ...++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999975444 56677888899999999999999887643 4799999988753 3333333 346899999
Q ss_pred CCEEEEEE-CCCeEEEE--ECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEE-CCCeEEEEECCCCccccccCCcccee
Q 000936 105 YPWIVSAS-DDQTIRIW--NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDIGALRKKTVSPADDILR 180 (1219)
Q Consensus 105 ~~~l~s~s-~Dg~I~iw--d~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~I~vwd~~~~~~~~~~~~~~~~~ 180 (1219)
|++|+.++ .+|.+.|| |+.+++. ..+..+...+.+..|+|+|+.|+.++ .+|..++|++......
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---------- 327 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---------- 327 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----------
Confidence 99888765 57766555 6666554 45666777788999999999777655 5788888886532110
Q ss_pred eccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCC
Q 000936 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ 260 (1219)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g 260 (1219)
.. .+ .+.. ....|+|+|+.++..+.++ +.+||+.++... .+..+ ....++.|+|+|
T Consensus 328 ---------------~~-~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~---~lt~~-~~~~~~~~sPdG 383 (429)
T PRK01742 328 ---------------AS-LV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE---VLSST-FLDESPSISPNG 383 (429)
T ss_pred ---------------eE-Ee-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE---EecCC-CCCCCceECCCC
Confidence 00 11 2222 3578999999998887765 556999887642 22211 123567899999
Q ss_pred CEEEEEeCCCcEEEEeC--CCCeeEEEEecCCCCEEEEEEeCC
Q 000936 261 DIIVSNSEDKSIRVWDV--TKRTGVQTFRREHDRFWILASHPE 301 (1219)
Q Consensus 261 ~~L~s~s~dg~I~iwdl--~~~~~~~~~~~~~~~i~~l~~sp~ 301 (1219)
++|+.++.++.+.+|++ .++.....+..+.+.+...+|||-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 99999999998888875 357778888777788888999985
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=3.9e-14 Score=147.49 Aligned_cols=253 Identities=16% Similarity=0.170 Sum_probs=189.3
Q ss_pred eecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCC---eEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 000936 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g---~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1219)
.|..--.+|+|.+|++|+..+|++..+..|.||..... +..++++.|+..|++|+|+|..+.|++|+.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34445678999999999999999999999999997655 467889999999999999999999999999999999998
Q ss_pred -CCC--eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE----EEEecCCCCeEEEEEecCCCEEEEE
Q 000936 81 -KMH--RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI----SVLTGHNHYVMCASFHPKEDLVVSA 153 (1219)
Q Consensus 81 -~~~--~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i----~~~~~h~~~V~~l~~sp~~~~l~s~ 153 (1219)
..+ ++.-.+..++...+++.|+|.++.|++||....|.||-.+..+-- ..-+.+.+.|+++.|+|++-+++.|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 333 445556778999999999999999999999999999977644322 1234567889999999999999999
Q ss_pred ECCCeEEEEECCC--CccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 000936 154 SLDQTVRVWDIGA--LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (1219)
Q Consensus 154 s~dg~I~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iw 231 (1219)
|.|+..||+..-- .+.+...+ +......||. +........+.+..+.|+|+|..|+-.+.|..+.+-
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~-------pWgsk~PFG~----lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPT-------PWGSKMPFGQ----LMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCC-------CCccCCcHHH----HHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 9999999997422 11111000 0001111111 111222456789999999999999999999999999
Q ss_pred ECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCC
Q 000936 232 RMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED 269 (1219)
Q Consensus 232 d~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~d 269 (1219)
|...... .+..+....-+..++.|-.+.. ++.++.|
T Consensus 234 da~~p~~-~v~~~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 234 DAAGPSE-RVQSVATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred ecCCCch-hccchhhccCCceeeEeecCCc-eeecCCC
Confidence 9877652 1334443346777777765443 4444444
No 212
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.3e-12 Score=147.73 Aligned_cols=361 Identities=11% Similarity=0.124 Sum_probs=223.5
Q ss_pred cceecccCCCEEEEEEeCCC------------CEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecC---C-CE
Q 000936 2 LTKFETKSNRVKGLSFHSKR------------PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS---Q-PL 65 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspdg------------~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~---~-~~ 65 (1219)
++.++-|...|+.+.|.|-. ..||++...|.|.+||...+..+..+..|..+|..++|-+. . ..
T Consensus 48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~ 127 (1062)
T KOG1912|consen 48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDV 127 (1062)
T ss_pred hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhe
Confidence 67889999999999998831 36788888999999999999999999999999999999773 3 35
Q ss_pred EEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCC-CEEEEEECCCeEEEEE-----------------------
Q 000936 66 FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWN----------------------- 121 (1219)
Q Consensus 66 Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~-~~l~s~s~Dg~I~iwd----------------------- 121 (1219)
|+.-.....+.+||..+|+.+...........|+.+.|-. +.+...+..|.+.+-+
T Consensus 128 LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl 207 (1062)
T KOG1912|consen 128 LLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDL 207 (1062)
T ss_pred eEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccch
Confidence 6666666799999999998887665544555556666532 2333333344444443
Q ss_pred ---------------------------------------------------CCCCeEEEEEecCCCCeEEEEEecCC--C
Q 000936 122 ---------------------------------------------------WQSRTCISVLTGHNHYVMCASFHPKE--D 148 (1219)
Q Consensus 122 ---------------------------------------------------~~s~~~i~~~~~h~~~V~~l~~sp~~--~ 148 (1219)
++-..++....-..+.+.-+.|-|++ +
T Consensus 208 ~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd 287 (1062)
T KOG1912|consen 208 AHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRD 287 (1062)
T ss_pred hhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcc
Confidence 22222222222223333344555544 4
Q ss_pred EEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCC-CCEEEEEeCCCe
Q 000936 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVSGADDRQ 227 (1219)
Q Consensus 149 ~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~-g~~l~sg~~dg~ 227 (1219)
.+++...||.+.+|--+........+.. .+. ......+...-.-....+......|. ...++.--.+|.
T Consensus 288 ~LfclH~nG~ltirvrk~~~~~f~~~~~-~l~---------~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~ 357 (1062)
T KOG1912|consen 288 ALFCLHSNGRLTIRVRKEEPTEFKKPNA-SLS---------MDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGD 357 (1062)
T ss_pred eEEEEecCCeEEEEEeeccCccccccch-hhc---------cccccceEEEeechhcccceeecCCCChhhhhhhhhcch
Confidence 6777777777777765432211111100 000 00000001011111222233334444 233344445666
Q ss_pred EEEEECCCCCeee-----------------------------EEeecCCCCCeEEEEEcc-----------CC-------
Q 000936 228 VKLWRMNETKAWE-----------------------------VDTLRGHMNNVSCVMFHA-----------KQ------- 260 (1219)
Q Consensus 228 I~iwd~~~~~~~~-----------------------------~~~~~~h~~~I~~l~~sp-----------~g------- 260 (1219)
+.+|.+.+++... +..-.+|....++...+| .+
T Consensus 358 ~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~ 437 (1062)
T KOG1912|consen 358 STFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTV 437 (1062)
T ss_pred hHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceee
Confidence 6777666433210 000123444444444433 12
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEE-eCCe
Q 000936 261 DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA-KDRF 339 (1219)
Q Consensus 261 ~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~-~d~~ 339 (1219)
.+++.|++.|+|.++|+.++.....+..|...|.++.|.....++..+...-.- ..+ .-+.
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~------------------~sg~vrN~ 499 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNS------------------ASGGVRND 499 (1062)
T ss_pred eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccc------------------cccceeee
Confidence 267899999999999999999988999999999999999888887766531100 000 2456
Q ss_pred EEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEe
Q 000936 340 LRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVI 396 (1219)
Q Consensus 340 i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~ 396 (1219)
+.+-|+.+|....+..+++... . +|+.+..|..|+++++... +.-+++|++
T Consensus 500 l~vtdLrtGlsk~fR~l~~~de-s---pI~~irvS~~~~yLai~Fr--~~plEiwd~ 550 (1062)
T KOG1912|consen 500 LVVTDLRTGLSKRFRGLQKPDE-S---PIRAIRVSSSGRYLAILFR--REPLEIWDL 550 (1062)
T ss_pred EEEEEcccccccccccCCCCCc-C---cceeeeecccCceEEEEec--ccchHHHhh
Confidence 7788999988777665555443 3 9999999999999998876 456777776
No 213
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.60 E-value=1.3e-14 Score=146.81 Aligned_cols=249 Identities=18% Similarity=0.238 Sum_probs=187.9
Q ss_pred EEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEc-cCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 000936 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1219)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~-~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd 121 (1219)
....+.+|.+.|+++.|-.+++ |.+|..-|.|++|++.+.+.+..+. .|...|+.+.--|+ ..+.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 3456678999999999988875 8999999999999999998888887 56778999998887 4688889999999999
Q ss_pred CCCCeEEEE--------------E---------------------------------------ecCCCCeEEEEEecC-C
Q 000936 122 WQSRTCISV--------------L---------------------------------------TGHNHYVMCASFHPK-E 147 (1219)
Q Consensus 122 ~~s~~~i~~--------------~---------------------------------------~~h~~~V~~l~~sp~-~ 147 (1219)
+.-+..+.. + .+..+.++|..+.-+ +
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 865321110 0 011234555554322 2
Q ss_pred --CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCC
Q 000936 148 --DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD 225 (1219)
Q Consensus 148 --~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~d 225 (1219)
-+++.|.++|.|.+||+++..+....+. ...+......|..+|.++.|.+.-..=++|+.+
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~-----------------~~kv~~~~ash~qpvlsldyas~~~rGisgga~ 226 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQ-----------------SSKVESPNASHKQPVLSLDYASSCDRGISGGAD 226 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeecccc-----------------ccccccchhhccCcceeeeechhhcCCcCCCcc
Confidence 2677888999999999998643322221 111333556799999999999876667788888
Q ss_pred CeEEEEECCCCCe-eeEE-eecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCC
Q 000936 226 RQVKLWRMNETKA-WEVD-TLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMN 303 (1219)
Q Consensus 226 g~I~iwd~~~~~~-~~~~-~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~ 303 (1219)
..+..|+++.... .++. ...-..-.|..+..-||++.+++++.|+.||||+.++..++..++.|...+.+++|+|+..
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred ccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence 8899998875421 1111 1122234578889999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeC
Q 000936 304 LLAAGHD 310 (1219)
Q Consensus 304 ~la~g~d 310 (1219)
++|+++.
T Consensus 307 lmAaask 313 (323)
T KOG0322|consen 307 LMAAASK 313 (323)
T ss_pred hhhhccC
Confidence 9998873
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=2.3e-13 Score=163.31 Aligned_cols=226 Identities=18% Similarity=0.273 Sum_probs=165.9
Q ss_pred EECCCCeEEEEecccCCCEEEEEEecCC-CEEEEEECCCeEEEEEcCC-------CeEEEEEccCCCCEEEEEEcCCCCE
Q 000936 36 WDYRMGTLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYKM-------HRCLFTLLGHLDYIRTVQFHHEYPW 107 (1219)
Q Consensus 36 Wd~~~g~~i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd~~~-------~~~~~~l~~h~~~I~~l~fs~d~~~ 107 (1219)
|+ ..|.++..+..|...|..++.++.. .+|+|||+||+|++||... .+...++......+.++.+.+.+..
T Consensus 1034 W~-p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WN-PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CC-ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 77 4689999999999999999998765 9999999999999999752 2333444445678999999999999
Q ss_pred EEEEECCCeEEEEECCCC-------eEEEEEecCC-CCeEE-EEEecC-C-CEEEEEECCCeEEEEECCCCccccccCCc
Q 000936 108 IVSASDDQTIRIWNWQSR-------TCISVLTGHN-HYVMC-ASFHPK-E-DLVVSASLDQTVRVWDIGALRKKTVSPAD 176 (1219)
Q Consensus 108 l~s~s~Dg~I~iwd~~s~-------~~i~~~~~h~-~~V~~-l~~sp~-~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~ 176 (1219)
+|+++.||.|++.+++.. .+......+. +.+.+ -+|... + ..++.+..-+.|..||++.......
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~---- 1188 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR---- 1188 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh----
Confidence 999999999999988751 1122222222 22333 333322 2 3788888899999999987543221
Q ss_pred cceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEee-cCCCCCeEEEE
Q 000936 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL-RGHMNNVSCVM 255 (1219)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~h~~~I~~l~ 255 (1219)
.......+.|++++.+|.++++++|+..|.+.+||++-+.. +... .++..++..+.
T Consensus 1189 ---------------------lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~--i~sw~~P~~~~i~~v~ 1245 (1431)
T KOG1240|consen 1189 ---------------------LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP--ILSWEHPARAPIRHVW 1245 (1431)
T ss_pred ---------------------hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce--eecccCcccCCcceEE
Confidence 12334567899999999999999999999999999998775 3332 23457788888
Q ss_pred EccC---CCEEEEEe--CCCcEEEEeCCCCeeEEEEecC
Q 000936 256 FHAK---QDIIVSNS--EDKSIRVWDVTKRTGVQTFRRE 289 (1219)
Q Consensus 256 ~sp~---g~~L~s~s--~dg~I~iwdl~~~~~~~~~~~~ 289 (1219)
.+|- ....++++ ..+.|.+|++.+|.+...+...
T Consensus 1246 ~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1246 LCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred eeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 7763 34555544 4678999999999877776644
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=7.2e-13 Score=139.94 Aligned_cols=251 Identities=16% Similarity=0.236 Sum_probs=168.3
Q ss_pred CCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEec-ccCCCEEEEEEecCC-CEEEEEECCCeEEEEEcCCC----
Q 000936 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYKMH---- 83 (1219)
Q Consensus 10 ~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~-~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd~~~~---- 83 (1219)
..+..++||+.-..+|++..|-+|++||-.. +....++ .....|+|++|-|.+ ..|++|+.. -|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 4578899999888889999999999999655 5555554 345679999999954 467777774 5999976421
Q ss_pred eE----------EEEEccCCCCEEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEE
Q 000936 84 RC----------LFTLLGHLDYIRTVQFHHEYPWIVSASD-DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVS 152 (1219)
Q Consensus 84 ~~----------~~~l~~h~~~I~~l~fs~d~~~l~s~s~-Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s 152 (1219)
+. +..-.+| .+|+++.|.+||..+++++. |..|.|||..++.++.......+.+.-+.|+||+++++.
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 11 1122344 68999999999999998876 578999999999887766445677888999999999999
Q ss_pred EECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000936 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1219)
Q Consensus 153 ~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd 232 (1219)
++-|+..++|+........ ...-..+.|...+|+|.|++|+.... |.-++|.
T Consensus 256 At~davfrlw~e~q~wt~e---------------------------rw~lgsgrvqtacWspcGsfLLf~~s-gsp~lys 307 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKE---------------------------RWILGSGRVQTACWSPCGSFLLFACS-GSPRLYS 307 (445)
T ss_pred ecccceeeeehhcccceec---------------------------ceeccCCceeeeeecCCCCEEEEEEc-CCceEEE
Confidence 9999999999654321110 11123448999999999997765543 3333443
Q ss_pred CCCCCeeeEEeecCCCCCeEEEEEccCCCEEE-EEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCC
Q 000936 233 MNETKAWEVDTLRGHMNNVSCVMFHAKQDIIV-SNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDS 311 (1219)
Q Consensus 233 ~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~-s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~ 311 (1219)
+. |......+. .++.-...-+-|+..-.....-+.-.+...+++|.|.|.++|+...+
T Consensus 308 l~---------------------f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 308 LT---------------------FDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred Ee---------------------ecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 32 221111010 11111222233333211111112234567899999999999987654
Q ss_pred C
Q 000936 312 G 312 (1219)
Q Consensus 312 g 312 (1219)
+
T Consensus 367 ~ 367 (445)
T KOG2139|consen 367 Q 367 (445)
T ss_pred C
Confidence 4
No 216
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=6.8e-15 Score=159.65 Aligned_cols=269 Identities=17% Similarity=0.214 Sum_probs=219.2
Q ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEc
Q 000936 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL 90 (1219)
Q Consensus 11 ~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~ 90 (1219)
.-..+.|+.+|.+|+.|+..|.|-.+|+.++++...+. -...|+++.|-.+.+++|++.. .-+.||| ..|..++.+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD-~~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQK-KYVYVYD-NNGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhh-ceEEEec-CCCcEEeehh
Confidence 44678999999999999999999999999999998885 3556899999988888988876 4789999 5688888887
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccc
Q 000936 91 GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK 170 (1219)
Q Consensus 91 ~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~ 170 (1219)
.| ..|..+.|-|-.-+|++++..|.++--|+.+|+.+..+....+.+..+.-+|-...+-+|...|+|.+|.....+..
T Consensus 208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred hc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 55 46889999999889999999999999999999999999888899999999999999999999999999998764332
Q ss_pred cccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCC
Q 000936 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNN 250 (1219)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~ 250 (1219)
..+..|.++|.++++.++|.++++.+.|+.++|||++.... +.+... ..+
T Consensus 287 ---------------------------vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q--l~t~~t-p~~ 336 (545)
T KOG1272|consen 287 ---------------------------VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ--LHTYRT-PHP 336 (545)
T ss_pred ---------------------------HHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc--cceeec-CCC
Confidence 24557999999999999999999999999999999998774 555544 455
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeC-CCCe--eEEEE--ecCCCCEEEEEEeCCCCEEEEEeCCCeeE
Q 000936 251 VSCVMFHAKQDIIVSNSEDKSIRVWDV-TKRT--GVQTF--RREHDRFWILASHPEMNLLAAGHDSGMIV 315 (1219)
Q Consensus 251 I~~l~~sp~g~~L~s~s~dg~I~iwdl-~~~~--~~~~~--~~~~~~i~~l~~sp~~~~la~g~d~gi~v 315 (1219)
...+++|..| +++.+....+.||.- ..+. .-..+ ....+.|..+.|.|-...|-+|+..|+.-
T Consensus 337 a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ts 404 (545)
T KOG1272|consen 337 ASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITS 404 (545)
T ss_pred cccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCcee
Confidence 6778888666 555555667999952 2211 11111 12235788999999999999999888653
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=7.4e-14 Score=166.46 Aligned_cols=218 Identities=11% Similarity=0.084 Sum_probs=156.0
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECC---CeEEEEECCCCeE--EEEecccCCCEEEEEEecCCCEEEEEE-CCCeEE
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHS---GVIQLWDYRMGTL--IDRFDEHDGPVRGVHFHKSQPLFVSGG-DDYKIK 76 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~d---g~I~iWd~~~g~~--i~~l~~h~~~V~~l~fsp~~~~Lasgs-~Dg~I~ 76 (1219)
+.+..|...|.+.+|||||++|+.++.+ ..|++||+.+++. +..+.+| ...++|+|||+.|+.++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 3456778889999999999999987643 4699999988753 3334444 34689999999888765 577655
Q ss_pred EE--EcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCC-eEEEEEecCCCCeEEEEEecCCCEEEE
Q 000936 77 VW--NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSAS-DDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHPKEDLVVS 152 (1219)
Q Consensus 77 vW--d~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s-~Dg~I~iwd~~s~-~~i~~~~~h~~~V~~l~~sp~~~~l~s 152 (1219)
|| |+.++. ...+..+...+....|+|||++|+.++ .++...||++... .....+ .+.. .+..|+|+|+.++.
T Consensus 274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~ 349 (429)
T PRK01742 274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVM 349 (429)
T ss_pred EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEE
Confidence 55 665554 455666777888999999999877665 5688888876432 222223 3433 45789999999988
Q ss_pred EECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000936 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1219)
Q Consensus 153 ~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd 232 (1219)
.+.++ +.+||+.+++.... ...+ ....+.|+|+|++|+.++.++.+.+|+
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~l---------------------------t~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVL---------------------------SSTF--LDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred EcCCC-EEEEECCCCCeEEe---------------------------cCCC--CCCCceECCCCCEEEEEEcCCCceEEE
Confidence 88765 55699877543210 0111 124578999999999999999888887
Q ss_pred CC--CCCeeeEEeecCCCCCeEEEEEccC
Q 000936 233 MN--ETKAWEVDTLRGHMNNVSCVMFHAK 259 (1219)
Q Consensus 233 ~~--~~~~~~~~~~~~h~~~I~~l~~sp~ 259 (1219)
+. +++. ...+..|.+.+...+|+|-
T Consensus 400 ~~~~~G~~--~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 400 LVSADGRF--KARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEECCCCc--eEEccCCCCCCCCcccCCC
Confidence 53 3443 6777788888999999984
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=5.8e-12 Score=145.19 Aligned_cols=319 Identities=12% Similarity=0.110 Sum_probs=204.6
Q ss_pred CEEEE-EECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEE
Q 000936 22 PWILA-SLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100 (1219)
Q Consensus 22 ~~Las-g~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~ 100 (1219)
+++++ -..+|.|.|.|..+.+.+.++......-..+.|+|||+++.+++.||.|.++|+.+++.+.++.. .....+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEE
Confidence 44544 44689999999999999999976554445678999999999999999999999999999999874 34578899
Q ss_pred EcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEecC-------CCCeEEEEEecCCCEEEEEEC-CCeEEEEECCCCcccc
Q 000936 101 FHHEYPWIVSAS-DDQTIRIWNWQSRTCISVLTGH-------NHYVMCASFHPKEDLVVSASL-DQTVRVWDIGALRKKT 171 (1219)
Q Consensus 101 fs~d~~~l~s~s-~Dg~I~iwd~~s~~~i~~~~~h-------~~~V~~l~~sp~~~~l~s~s~-dg~I~vwd~~~~~~~~ 171 (1219)
+|+||++++++. ..+.+.++|.++.+.+..+... ...+..+..+|....++..-. .+.|.+.|....+..
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~- 163 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL- 163 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-
Confidence 999999888765 5899999999999998877532 345777888888885655554 488888887664221
Q ss_pred ccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeeEEee----cC
Q 000936 172 VSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG-ADDRQVKLWRMNETKAWEVDTL----RG 246 (1219)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg-~~dg~I~iwd~~~~~~~~~~~~----~~ 246 (1219)
...............|+|++++++++ ..+..|.++|..+.+. +..+ ..
T Consensus 164 -------------------------~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~--v~~i~~g~~p 216 (369)
T PF02239_consen 164 -------------------------KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL--VALIDTGKKP 216 (369)
T ss_dssp -------------------------EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE--EEEEE-SSSB
T ss_pred -------------------------ceeeecccccccccccCcccceeeecccccceeEEEeeccceE--EEEeeccccc
Confidence 11223344566788999999987665 4577899999988775 2222 12
Q ss_pred CCCCeEEE-------EEc--cCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEE
Q 000936 247 HMNNVSCV-------MFH--AKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFK 317 (1219)
Q Consensus 247 h~~~I~~l-------~~s--p~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~ 317 (1219)
|..++..+ .|. ..+...++.-....+.+||..+.+.++++...... ..+..||+++++.+..--+-
T Consensus 217 ~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~---- 291 (369)
T PF02239_consen 217 HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNP---- 291 (369)
T ss_dssp EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-S----
T ss_pred cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCC----
Confidence 33333322 121 12233323333345678999999999999987777 77888999999888721110
Q ss_pred ecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEec
Q 000936 318 LERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1219)
Q Consensus 318 l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~ 397 (1219)
..+.|.++|..+.+.. ..+.... ...+..+.|+++|+.+.++....++.+.+|+..
T Consensus 292 ------------------~~~~v~viD~~tl~~~--~~i~~~~----~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 292 ------------------DADTVQVIDKKTLKVV--KTITPGP----GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp ------------------SHT-EEEEECCGTEEE--E-HHHHH----T--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred ------------------CCceEEEEECcCccee--EEEeccC----CCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence 2567889998886442 2222111 014788999999999998887666799999866
Q ss_pred C
Q 000936 398 K 398 (1219)
Q Consensus 398 ~ 398 (1219)
.
T Consensus 348 T 348 (369)
T PF02239_consen 348 T 348 (369)
T ss_dssp T
T ss_pred C
Confidence 4
No 219
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.2e-14 Score=155.27 Aligned_cols=196 Identities=15% Similarity=0.247 Sum_probs=156.8
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEcc-
Q 000936 13 KGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG- 91 (1219)
Q Consensus 13 ~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~- 91 (1219)
.+++|+++|..|++|+.||++|||++.+...+.....|.+.|.++.|+|||++|++.+.| ...||+..++.++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 889999999999999999999999998888888888999999999999999999999999 999999999977776652
Q ss_pred -CCCCEEEEEEcCCC---CE--EEEEECCCeEEEEECCCCe-----EEEEEecCCCCeEEEEEecCCCEEEEEECCCeEE
Q 000936 92 -HLDYIRTVQFHHEY---PW--IVSASDDQTIRIWNWQSRT-----CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1219)
Q Consensus 92 -h~~~I~~l~fs~d~---~~--l~s~s~Dg~I~iwd~~s~~-----~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~ 160 (1219)
.......+.|+.++ .+ ++.....+.|+.|++.... ...........|.+++.+++|++++.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 23356677888777 32 2233334566665543211 1111222334699999999999999999999999
Q ss_pred EEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000936 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (1219)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~ 235 (1219)
+++..+.+. ..+..+.|..-|+.+.|+|+.+++++.+.+....+..+.-
T Consensus 307 i~~~~~lq~--------------------------~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 307 IYDAKSLQR--------------------------LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeceeee--------------------------eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999987654 3446678999999999999999999999998888877654
No 220
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=1.3e-12 Score=138.94 Aligned_cols=239 Identities=13% Similarity=0.207 Sum_probs=182.6
Q ss_pred ccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECC--CeEEEEEcCCCe
Q 000936 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD--YKIKVWNYKMHR 84 (1219)
Q Consensus 7 ~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D--g~I~vWd~~~~~ 84 (1219)
+....+..+.|+.+...|.+|+.|| -++|+.+.-............|.-+-|+.. ++|..+.+ +.+++.+++.+.
T Consensus 3 ~~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 3 GKKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CCCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCc
Confidence 4556788999999999999999998 677887654442222223344666666654 55555433 569999998888
Q ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec---CCCCeEEEEEecCCCEEEEEE--CCCeE
Q 000936 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG---HNHYVMCASFHPKEDLVVSAS--LDQTV 159 (1219)
Q Consensus 85 ~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~---h~~~V~~l~~sp~~~~l~s~s--~dg~I 159 (1219)
.+..+. -...|.++.++.+ +|+++-.+. |+|||+.+.+.+.++.. +...+.++++++.+.+++.-+ ..|.|
T Consensus 80 ~ICe~~-fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 80 TICEIF-FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred eEEEEe-cCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 777765 4567888888765 577666554 99999999999887753 445576777776667887533 36889
Q ss_pred EEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCCe
Q 000936 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRMNETKA 238 (1219)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~-I~iwd~~~~~~ 238 (1219)
.+||..+.+. ...+..|.+.+-+++|+++|.+|+++++.|+ ||++.+.+++.
T Consensus 156 ~l~d~~nl~~---------------------------v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k 208 (391)
T KOG2110|consen 156 VLFDTINLQP---------------------------VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK 208 (391)
T ss_pred EEEEccccee---------------------------eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE
Confidence 9999987554 3367799999999999999999999999997 78999999887
Q ss_pred eeEEeecCC--CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000936 239 WEVDTLRGH--MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1219)
Q Consensus 239 ~~~~~~~~h--~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~ 281 (1219)
+..++.. ...|.+++|+|++++|++.|..++|++|.+.+..
T Consensus 209 --l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 209 --LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred --eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 6666543 3468899999999999999999999999987543
No 221
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.8e-14 Score=157.20 Aligned_cols=228 Identities=19% Similarity=0.267 Sum_probs=165.7
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe-cccCCCEEEEEEec--CCCEEEEEECCCeEEEEE
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFHK--SQPLFVSGGDDYKIKVWN 79 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l-~~h~~~V~~l~fsp--~~~~Lasgs~Dg~I~vWd 79 (1219)
..|+||++.|.|+.|+.+|.+|++|+.|-.+.|||+-..++++.+ .+|...|.++.|-| +.+++++|..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 468999999999999999999999999999999999988888887 48999999999998 456899999999999999
Q ss_pred cCC----------CeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCe-EE------EE---EecCCCCe
Q 000936 80 YKM----------HRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRT-CI------SV---LTGHNHYV 138 (1219)
Q Consensus 80 ~~~----------~~~~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~-~i------~~---~~~h~~~V 138 (1219)
+.. ....+.+..|...|..++-.|+++ .+.+++.||+|+-+|++... |. .. +...--..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 974 133445567899999999999994 88899999999999997521 11 11 11112346
Q ss_pred EEEEEecCC-CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeec-----------CCC
Q 000936 139 MCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-----------DRG 206 (1219)
Q Consensus 139 ~~l~~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 206 (1219)
.|+..+|.. .+|++|+.|-..++||.+...+........ ...+.. ....+.+...+| ...
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~-~~~pp~-------~~~cv~yf~p~hlkn~~gn~~~~~~~ 275 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM-NTCPPK-------DCRCVRYFSPGHLKNSQGNLDRYITC 275 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc-cCCCCc-------ccchhheecCccccCcccccccceee
Confidence 788999976 689999999999999964432221111000 000000 000011111111 123
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 000936 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1219)
Q Consensus 207 V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~ 238 (1219)
++-++|+|+|.-+++.-..-.|+++|++..+.
T Consensus 276 ~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 276 CTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred eEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 56789999998777776677899999987765
No 222
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.56 E-value=2.2e-13 Score=139.84 Aligned_cols=234 Identities=16% Similarity=0.246 Sum_probs=174.6
Q ss_pred ccCCCEEEEEEeCCCC-----EEEEEECCCeEEEEECCC--CeEE--EE-----ecccCCCEEEEEEec-CCCEEEEEEC
Q 000936 7 TKSNRVKGLSFHSKRP-----WILASLHSGVIQLWDYRM--GTLI--DR-----FDEHDGPVRGVHFHK-SQPLFVSGGD 71 (1219)
Q Consensus 7 ~h~~~V~~i~fspdg~-----~Lasg~~dg~I~iWd~~~--g~~i--~~-----l~~h~~~V~~l~fsp-~~~~Lasgs~ 71 (1219)
.|.-+++.+.|.|+.. +||++ +-.+++|.+.. .+.. .. -..+..++++..|+. +-+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 4777899999999863 45554 44699999863 2211 11 135778999999987 5568889999
Q ss_pred CCeEEEEEcCCCe---EEEEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEe
Q 000936 72 DYKIKVWNYKMHR---CLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLT---GHNHYVMCASFH 144 (1219)
Q Consensus 72 Dg~I~vWd~~~~~---~~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~---~h~~~V~~l~~s 144 (1219)
|.+..|||++++. ....+-.|...|..++|...+. .+++.+.||.+|++|++..+....+. ....+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999863 3456778999999999999665 88999999999999998765544332 225678889999
Q ss_pred cCC-CEEEEEECC-CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCC-CCEEEE
Q 000936 145 PKE-DLVVSASLD-QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVS 221 (1219)
Q Consensus 145 p~~-~~l~s~s~d-g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~-g~~l~s 221 (1219)
+.. +++++-..| ..|.+.|++.... ....+.+|.+.|+.++|.|. ...|++
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~t--------------------------pva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCT--------------------------PVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCc--------------------------ceehhhcCcccccceEecCCCCceeee
Confidence 866 666665444 5699999986332 34468899999999999995 468999
Q ss_pred EeCCCeEEEEECCCCCe----eeEEeecCCCCCeEEEEEcc-CCCEEEEEeCC
Q 000936 222 GADDRQVKLWRMNETKA----WEVDTLRGHMNNVSCVMFHA-KQDIIVSNSED 269 (1219)
Q Consensus 222 g~~dg~I~iwd~~~~~~----~~~~~~~~h~~~I~~l~~sp-~g~~L~s~s~d 269 (1219)
+++|..+.+||+..... -++.... ..+.|..+.|++ .+.+|+.+...
T Consensus 306 aGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 306 AGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred cCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 99999999999976432 1111222 456799999996 56778777643
No 223
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=6.8e-14 Score=151.51 Aligned_cols=201 Identities=16% Similarity=0.247 Sum_probs=159.1
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec-
Q 000936 55 RGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG- 133 (1219)
Q Consensus 55 ~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~- 133 (1219)
.+++|+.+|..+++|+.||+++||++.+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++.++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 679999999999999999999999988888888888899999999999999999999999 899999999977776652
Q ss_pred -CCCCeEEEEEecCC---C--EEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCe
Q 000936 134 -HNHYVMCASFHPKE---D--LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207 (1219)
Q Consensus 134 -h~~~V~~l~~sp~~---~--~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 207 (1219)
.+.....+.|+.++ . .++.....+.|+.||+...+.....+ ..........|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~----------------------~~~~~~~~~si 284 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR----------------------LRKKIKRFKSI 284 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc----------------------hhhhhhccCcc
Confidence 33346678888776 2 33333445678888875533211100 01112234579
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000936 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1219)
Q Consensus 208 ~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~ 279 (1219)
++++.+++|++++.|+.||.|.+++..+-+.. ...-+.|...|+.+.|+|+.+++++.+.+..+.+..+.-
T Consensus 285 Ssl~VS~dGkf~AlGT~dGsVai~~~~~lq~~-~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 285 SSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL-QYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeEEEcCCCcEEEEeccCCcEEEEEeceeeee-EeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999999999999999999887762 334467999999999999999999999998888877653
No 224
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.54 E-value=7.6e-13 Score=158.96 Aligned_cols=255 Identities=16% Similarity=0.178 Sum_probs=176.4
Q ss_pred cceecccCCCEEEEEEeCCC-CEEEEEECCCeEEEEECCC-----C--eEEEEecccCCCEEEEEEecCCCEEEEEECCC
Q 000936 2 LTKFETKSNRVKGLSFHSKR-PWILASLHSGVIQLWDYRM-----G--TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY 73 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspdg-~~Lasg~~dg~I~iWd~~~-----g--~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg 73 (1219)
+.+|..|+..|..++.++.. .++++|+.||+|++||.+. + +...++..-.+++.++.+.+.+..+|+++.||
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 56788999999999988754 9999999999999999853 1 22334444578899999999999999999999
Q ss_pred eEEEEEcCCC--e-----EEEEEccCC--CCEEEEEEcCC-C-CEEEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEE
Q 000936 74 KIKVWNYKMH--R-----CLFTLLGHL--DYIRTVQFHHE-Y-PWIVSASDDQTIRIWNWQSRTCISVLT--GHNHYVMC 140 (1219)
Q Consensus 74 ~I~vWd~~~~--~-----~~~~l~~h~--~~I~~l~fs~d-~-~~l~s~s~Dg~I~iwd~~s~~~i~~~~--~h~~~V~~ 140 (1219)
.|.+.+++.. + +......+. ..|..-+|... + ..++.+..-+.|..||.........++ ...+.|++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 9999998752 1 111122222 23333344332 2 378888888999999998766555443 34578999
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCC---
Q 000936 141 ASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP--- 217 (1219)
Q Consensus 141 l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~--- 217 (1219)
++.+|.++++++|+..|.+.+||++-..... ....++..++..+..+|..+
T Consensus 1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~--------------------------sw~~P~~~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL--------------------------SWEHPARAPIRHVWLCPTYPQES 1254 (1431)
T ss_pred EEecCCceEEEEecCCceEEEEEeecCceee--------------------------cccCcccCCcceEEeeccCCCCc
Confidence 9999999999999999999999998643221 12234456777777776433
Q ss_pred EEEEEe--CCCeEEEEECCCCCeeeEEeec-----------------CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000936 218 LIVSGA--DDRQVKLWRMNETKAWEVDTLR-----------------GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1219)
Q Consensus 218 ~l~sg~--~dg~I~iwd~~~~~~~~~~~~~-----------------~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~ 278 (1219)
..++++ ..+.|.+|++.++....+.... .+.-......+...+..+++|+.|..|+.||..
T Consensus 1255 ~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1255 VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 444443 5788999999988652221111 011111222333445688999999999999987
Q ss_pred CCee
Q 000936 279 KRTG 282 (1219)
Q Consensus 279 ~~~~ 282 (1219)
....
T Consensus 1335 ~p~~ 1338 (1431)
T KOG1240|consen 1335 RPEI 1338 (1431)
T ss_pred Cccc
Confidence 5443
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.8e-12 Score=135.55 Aligned_cols=317 Identities=13% Similarity=0.170 Sum_probs=194.6
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEecCC-CEEEEEECCCeEEEEECCCCcccc
Q 000936 94 DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKT 171 (1219)
Q Consensus 94 ~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~-~h~~~V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~ 171 (1219)
..++.++||+.-..++++..|-+|++||-.+ ++...++ .....|+|++|-|.+ ..+++|+. +-|.+|.....-...
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 4578899999777788999999999999665 5555554 345679999999976 56666765 568999875421111
Q ss_pred ccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeEEeecCCCCC
Q 000936 172 VSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRGHMNN 250 (1219)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~h~~~ 250 (1219)
.. .. .++....-...-.+| ..|+++.|.+||..+++++ .|..|.|||.+++...++. ....+.
T Consensus 177 r~------------~~-~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~--~~glgg 240 (445)
T KOG2139|consen 177 RN------------IR-MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI--PKGLGG 240 (445)
T ss_pred cc------------cc-cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc--ccCCCc
Confidence 00 00 000001112233445 7899999999999999887 5678999999999874444 334567
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCc--ceEEec
Q 000936 251 VSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERER--PAFAVS 328 (1219)
Q Consensus 251 I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~--~~~s~~ 328 (1219)
++-+.||||+.+|++++-|+..++|+..............+++...+|+|+|++|.....+.-.++.+.-.. +.+.-.
T Consensus 241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~ 320 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRP 320 (445)
T ss_pred eeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCc
Confidence 889999999999999999999999965433332333345569999999999998887766666666553322 111100
Q ss_pred CCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCC------CEEEEEEecCCCCC
Q 000936 329 GDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDG------GSYELYVIPKDSIG 402 (1219)
Q Consensus 329 ~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~d------g~i~l~~~~~~~~~ 402 (1219)
++ ....+-+-|+..-. +..... -.-+.+.+++|.|.|.++++.....+ +.+.+|+.......
T Consensus 321 ~~-----~k~~lliaDL~e~t------i~ag~~-l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 321 QS-----IKRVLLIADLQEVT------ICAGQR-LCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred cc-----ceeeeeeccchhhh------hhcCcc-cccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 00 01111222332210 000000 00237889999999999999877433 23344544332221
Q ss_pred CCc--cccccccCceeEEEEE---eCCeEEEEEcCCCEEEEEecC
Q 000936 403 RGD--SVQDAKKGLGGSAIFI---ARNRFAVLDKSSNQVLVKNLK 442 (1219)
Q Consensus 403 ~~~--~~~~~~~~~i~~~~fs---~d~~~l~~~~~dg~I~Iwdl~ 442 (1219)
+.. ....+.. -..+.|. .++++|..+-+.|.+.-|++.
T Consensus 389 els~cg~i~ge~--P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 389 ELSYCGMIGGEY--PAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEecccccCCC--CceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 111 0001111 1223444 346777777667777777664
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=4e-11 Score=125.44 Aligned_cols=240 Identities=18% Similarity=0.285 Sum_probs=165.1
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEE-EECC------CeEEEEECCCC
Q 000936 53 PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVS-ASDD------QTIRIWNWQSR 125 (1219)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s-~s~D------g~I~iwd~~s~ 125 (1219)
...+++|+.|...+++|.++| .+||+.+.-+...+...+.+.+.-+..---.++++. |+.+ ..|.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345699999999999998876 899998753332222222222211111112234443 3332 47999996667
Q ss_pred eEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCC-ccccccCCccceeeccccccccccccceEEEEEeecC
Q 000936 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGAL-RKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD 204 (1219)
Q Consensus 126 ~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1219)
+++..+. ...+|.++.+.++ .|++.- .+.|.||..... +.... .......
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~-------------------------~et~~NP 136 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHV-------------------------IETRSNP 136 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheee-------------------------eecccCC
Confidence 7777776 5688999999854 455554 689999998742 22110 0111122
Q ss_pred CCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCc-EEEEeCCCCee
Q 000936 205 RGVNWAAFHPTLPLIVS-GADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS-IRVWDVTKRTG 282 (1219)
Q Consensus 205 ~~V~~l~~sp~g~~l~s-g~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~-I~iwdl~~~~~ 282 (1219)
.++.+++-+.+..+|+. |-.-|.|+|-|+...+.-....+..|.+.|.|++.+-+|.++|++|..|+ |||||..+|+.
T Consensus 137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~ 216 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL 216 (346)
T ss_pred CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE
Confidence 33444443334344444 34568999999987764234678899999999999999999999999998 89999999999
Q ss_pred EEEEecCCC--CEEEEEEeCCCCEEEEEeCCCe-eEEEecCCc
Q 000936 283 VQTFRREHD--RFWILASHPEMNLLAAGHDSGM-IVFKLERER 322 (1219)
Q Consensus 283 ~~~~~~~~~--~i~~l~~sp~~~~la~g~d~gi-~v~~l~~~~ 322 (1219)
++++++..+ .+++++|||+..+||+.++.|. .+|.+....
T Consensus 217 l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 217 LQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 999987654 5999999999999999988764 577776543
No 227
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.2e-13 Score=152.22 Aligned_cols=226 Identities=19% Similarity=0.259 Sum_probs=164.9
Q ss_pred EEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE-ccCCCCEEEEEEcCC--CCEEEEEECCCeEEEE
Q 000936 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL-LGHLDYIRTVQFHHE--YPWIVSASDDQTIRIW 120 (1219)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l-~~h~~~I~~l~fs~d--~~~l~s~s~Dg~I~iw 120 (1219)
...+.+|.+.|.|+.|+.+|.+|++|++|..+.|||.-..++++.+ ++|...|.++.|-|. ...+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3567899999999999999999999999999999999888888776 689999999999985 4489999999999999
Q ss_pred ECCC----------CeEEEEEecCCCCeEEEEEecCC-CEEEEEECCCeEEEEECCCCccccccCCccceeecccccccc
Q 000936 121 NWQS----------RTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLF 189 (1219)
Q Consensus 121 d~~s----------~~~i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (1219)
|+.+ ......+..|...|..++-.|++ +.+.++++||+|+-+|++....-..... ....+
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~-~~~~l-------- 193 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED-CPSIL-------- 193 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc-ccHHH--------
Confidence 9984 23445567899999999999998 8999999999999999987432211000 00000
Q ss_pred ccccceEEEEEeecCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCe-----e------e-----EE-eecCCC---
Q 000936 190 GGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKA-----W------E-----VD-TLRGHM--- 248 (1219)
Q Consensus 190 ~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sg~~dg~I~iwd~~~~~~-----~------~-----~~-~~~~h~--- 248 (1219)
......--...++..+|.. .+|++|+.|-..++||.+.... + + +. -..+|-
T Consensus 194 --------~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~ 265 (758)
T KOG1310|consen 194 --------VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNS 265 (758)
T ss_pred --------HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCc
Confidence 0011112346788899865 4789999999999999421100 0 0 11 112222
Q ss_pred -----C---CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEE
Q 000936 249 -----N---NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286 (1219)
Q Consensus 249 -----~---~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~ 286 (1219)
. .++-++|+|+|.-|++.-..-.|+++|+..++....+
T Consensus 266 ~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 266 QGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 1 1456788999877666655567999998877655443
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=5.1e-12 Score=150.32 Aligned_cols=235 Identities=8% Similarity=-0.007 Sum_probs=161.2
Q ss_pred CeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEE---CCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCE
Q 000936 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGG---DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (1219)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs---~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~ 107 (1219)
..|.+||+..+. ...+..+...+.+.+|||||+.|+..+ .+..|.+|++.+++... +....+.+....|+|||+.
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence 379999976543 344555778899999999999888654 34579999998875432 2223334556899999998
Q ss_pred EEEE-ECCC--eEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECC-CeEEEE--ECCCCccccccCCccceee
Q 000936 108 IVSA-SDDQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD-QTVRVW--DIGALRKKTVSPADDILRL 181 (1219)
Q Consensus 108 l~s~-s~Dg--~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d-g~I~vw--d~~~~~~~~~~~~~~~~~~ 181 (1219)
|+.. +.+| .|.+||+.+++.... ..+...+....|+|+|+.|+..+.+ +...+| |+.++...
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----------- 324 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----------- 324 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-----------
Confidence 8765 3344 589999988876543 4344567889999999988877754 444444 55443211
Q ss_pred ccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCeeeEEeecCCCCCeEEEEEcc
Q 000936 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1219)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp 258 (1219)
.+..+........|+|+|+.++..+.+ ..|.+||+.++.. ..+... .......|+|
T Consensus 325 -----------------~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~---~~Lt~~-~~~~~p~~Sp 383 (429)
T PRK03629 325 -----------------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLTDT-FLDETPSIAP 383 (429)
T ss_pred -----------------EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe---EEeCCC-CCCCCceECC
Confidence 112233345578999999998876643 3588899988764 233221 2234678999
Q ss_pred CCCEEEEEeCCCc---EEEEeCCCCeeEEEEecCCCCEEEEEEeCC
Q 000936 259 KQDIIVSNSEDKS---IRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1219)
Q Consensus 259 ~g~~L~s~s~dg~---I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~ 301 (1219)
||++|+.++.++. +.++++ ++.....+..+.+.+...+|+|-
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 9999999887764 677776 45555666666777888888873
No 229
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=3.1e-11 Score=126.23 Aligned_cols=239 Identities=13% Similarity=0.299 Sum_probs=169.3
Q ss_pred CCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEE-EEECC------CeEEEEEcCC
Q 000936 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFV-SGGDD------YKIKVWNYKM 82 (1219)
Q Consensus 10 ~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~La-sgs~D------g~I~vWd~~~ 82 (1219)
....+++|+.|..-+++|..+| .+||+.+--+...+-+.+.+.+.-+..--..++|+ +||.+ ..+.|||=..
T Consensus 6 ~~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred CceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 3456799999999999998888 89999875333222222222221111111233444 34332 5899999767
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEecCC--CCeEEEEEecCCCEEEE-EECCCe
Q 000936 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ-SRTCISVLTGHN--HYVMCASFHPKEDLVVS-ASLDQT 158 (1219)
Q Consensus 83 ~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~-s~~~i~~~~~h~--~~V~~l~~sp~~~~l~s-~s~dg~ 158 (1219)
.+++.++. -..+|.++.+.++. |++.- .+.|.||... +.+.++.+.... ..+.++.-+.+..+|+. |-.-|.
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~r--iVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRDR--IVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCCe--EEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 78888776 56789999999873 55554 6789999987 555566554322 23444433333344443 445689
Q ss_pred EEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCC
Q 000936 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRMNETK 237 (1219)
Q Consensus 159 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~-I~iwd~~~~~ 237 (1219)
|++-|+...+.. ....+..|...|.|++.+-+|.++++++..|+ |+|||..++.
T Consensus 161 vQi~dL~~~~~~-------------------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 161 VQIVDLASTKPN-------------------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred EEEEEhhhcCcC-------------------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc
Confidence 999999775432 12367899999999999999999999999997 7999999998
Q ss_pred eeeEEeecC--CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000936 238 AWEVDTLRG--HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1219)
Q Consensus 238 ~~~~~~~~~--h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~ 280 (1219)
. +..++. ....|.+++|||++.+|+++|..|++.|+.+...
T Consensus 216 ~--l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 216 L--LQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred E--eeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 7 555543 3456999999999999999999999999998753
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=6.3e-12 Score=150.26 Aligned_cols=234 Identities=11% Similarity=0.021 Sum_probs=160.5
Q ss_pred CeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEEC---CCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCE
Q 000936 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD---DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (1219)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~---Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~ 107 (1219)
..|.+||.. +.....+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++... +..+.+...+..|+|||+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 469999975 4455566678888999999999999988764 3479999998876533 3334455567899999997
Q ss_pred EE-EEECCC--eEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEEC-CCe--EEEEECCCCccccccCCccceee
Q 000936 108 IV-SASDDQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQT--VRVWDIGALRKKTVSPADDILRL 181 (1219)
Q Consensus 108 l~-s~s~Dg--~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~--I~vwd~~~~~~~~~~~~~~~~~~ 181 (1219)
++ +.+.+| .|++||+.+++.. .+..+........|+|+|+.++.++. +|. |.++|+.+++..
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~----------- 329 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE----------- 329 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-----------
Confidence 75 445555 5999999888753 45555555678899999998887764 444 555666543221
Q ss_pred ccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCeeeEEeecCCCCCeEEEEEcc
Q 000936 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR---QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1219)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp 258 (1219)
... .+.......+|+|+|+.++..+.++ .|.+||+.+++. ..+. +........|+|
T Consensus 330 ---------------~lt--~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---~~Lt-~~~~~~~p~~sp 388 (433)
T PRK04922 330 ---------------RLT--FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---RTLT-PGSLDESPSFAP 388 (433)
T ss_pred ---------------Eee--cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe---EECC-CCCCCCCceECC
Confidence 111 1223344689999999988765443 699999988764 2332 222345679999
Q ss_pred CCCEEEEEeCC---CcEEEEeCCCCeeEEEEecCCCCEEEEEEeC
Q 000936 259 KQDIIVSNSED---KSIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (1219)
Q Consensus 259 ~g~~L~s~s~d---g~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp 300 (1219)
||++|+..+.+ +.|.++++. +.....+..+.+.+...+|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 99988877653 357888875 444455554555666677776
No 231
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=9e-14 Score=151.09 Aligned_cols=228 Identities=17% Similarity=0.274 Sum_probs=190.4
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec
Q 000936 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG 133 (1219)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~ 133 (1219)
-..+.++.+|+.|+.|+..|.|-.+|+.+++..+.+. -...|+++.|-.+.++++++- ...+.||| ..|..+..++.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~ 208 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKR 208 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhh
Confidence 4678999999999999999999999999999998887 456789999999888777765 57899999 67888888886
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEc
Q 000936 134 HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213 (1219)
Q Consensus 134 h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 213 (1219)
| ..|..+.|.|..-+|++++..|.++--|+++++... .+....+.+..++-+
T Consensus 209 ~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa---------------------------~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 209 H-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA---------------------------SIRTGAGRTDVMKQN 260 (545)
T ss_pred c-CchhhhcccchhheeeecccCCceEEEeechhhhhH---------------------------HHHccCCccchhhcC
Confidence 5 468999999999999999999999999999877643 233455677788888
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCE
Q 000936 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRF 293 (1219)
Q Consensus 214 p~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i 293 (1219)
|-...+-+|...|+|.+|..+.... +..+..|.++|+++++.++|.++++.+.|..++|||++....+.++.. .-..
T Consensus 261 P~NaVih~GhsnGtVSlWSP~skeP--LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a 337 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSKEP--LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPA 337 (545)
T ss_pred CccceEEEcCCCceEEecCCCCcch--HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCc
Confidence 9888999999999999999998876 778889999999999999999999999999999999998887777665 4455
Q ss_pred EEEEEeCCCCEEEEEeCCCeeEE
Q 000936 294 WILASHPEMNLLAAGHDSGMIVF 316 (1219)
Q Consensus 294 ~~l~~sp~~~~la~g~d~gi~v~ 316 (1219)
..+++|..| +||++..+.+.+|
T Consensus 338 ~~ls~Sqkg-lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 338 SNLSLSQKG-LLALSYGDHVQIW 359 (545)
T ss_pred ccccccccc-ceeeecCCeeeee
Confidence 667777654 4666655554444
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.48 E-value=3.1e-10 Score=130.96 Aligned_cols=323 Identities=13% Similarity=0.067 Sum_probs=187.9
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeecccccc
Q 000936 108 IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187 (1219)
Q Consensus 108 l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 187 (1219)
+++-..++.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+...
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~---------------- 72 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA---------------- 72 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE----------------
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE----------------
Confidence 3455668999999999999999998654444557899999999999999999999999866432
Q ss_pred ccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeEEeecC-------CCCCeEEEEEccC
Q 000936 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRG-------HMNNVSCVMFHAK 259 (1219)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~-------h~~~I~~l~~sp~ 259 (1219)
.+. -......++++++|++++++. .++.+.++|..+.+. +..+.. ....+..+..+|.
T Consensus 73 -----------~i~-~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~--v~~I~~~~~~~~~~~~Rv~aIv~s~~ 138 (369)
T PF02239_consen 73 -----------TIK-VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP--VKTIPTGGMPVDGPESRVAAIVASPG 138 (369)
T ss_dssp -----------EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E--EEEEE--EE-TTTS---EEEEEE-SS
T ss_pred -----------EEe-cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccc--eeecccccccccccCCCceeEEecCC
Confidence 122 233467899999999988765 689999999998876 444332 2346778888888
Q ss_pred CCEEEEEeC-CCcEEEEeCCCCeeEEE-EecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeC
Q 000936 260 QDIIVSNSE-DKSIRVWDVTKRTGVQT-FRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKD 337 (1219)
Q Consensus 260 g~~L~s~s~-dg~I~iwdl~~~~~~~~-~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d 337 (1219)
...++.+-. .+.|.+.|......+.. ............|+|+++++.++.. ..
T Consensus 139 ~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~-------------------------~s 193 (369)
T PF02239_consen 139 RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN-------------------------GS 193 (369)
T ss_dssp SSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG-------------------------GG
T ss_pred CCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccc-------------------------cc
Confidence 885555544 58888888776654432 2223455678899999998877643 23
Q ss_pred CeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCC-----CCCCCcccccccc
Q 000936 338 RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD-----SIGRGDSVQDAKK 412 (1219)
Q Consensus 338 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~-----~~~~~~~~~~~~~ 412 (1219)
+.+-++|..+++...........+ ..+...+ .+|....+-...+.....+-....... ...+........
T Consensus 194 n~i~viD~~~~k~v~~i~~g~~p~---~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~- 268 (369)
T PF02239_consen 194 NKIAVIDTKTGKLVALIDTGKKPH---PGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ- 268 (369)
T ss_dssp TEEEEEETTTTEEEEEEE-SSSBE---ETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S-
T ss_pred ceeEEEeeccceEEEEeecccccc---ccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC-
Confidence 344455555444433222211111 0011111 223222111111111111112211110 112222223332
Q ss_pred CceeEEEEEeCCeEEEEE----cCCCEEEEEecC-CceeEeeeCCc--ceEEEEEeCCCcEEEEe----CCeEEEEEcCC
Q 000936 413 GLGGSAIFIARNRFAVLD----KSSNQVLVKNLK-NEVVKKSILPI--AADAIFYAGTGNLLCRA----EDRVVIFDLQQ 481 (1219)
Q Consensus 413 ~~i~~~~fs~d~~~l~~~----~~dg~I~Iwdl~-~~~~~~i~~~~--~v~~l~~s~dg~~L~s~----d~~I~l~dl~~ 481 (1219)
+....+.-+|+++++... ...++|.++|.+ .+..+++.... .+.++.|+++|+.+..+ ++.|.+||..+
T Consensus 269 G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 269 GGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp SSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred CCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 223667789999999988 456899999999 45666665433 59999999999988443 45899999999
Q ss_pred CeEEEEEec
Q 000936 482 RLVLGDLQT 490 (1219)
Q Consensus 482 ~~~l~~~~~ 490 (1219)
.+.+.+++.
T Consensus 349 l~~~~~i~~ 357 (369)
T PF02239_consen 349 LKEKKRIPV 357 (369)
T ss_dssp TEEEEEEE-
T ss_pred cEEEEEEEe
Confidence 999998874
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.3e-11 Score=147.65 Aligned_cols=233 Identities=12% Similarity=0.056 Sum_probs=162.0
Q ss_pred CeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEEC---CCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCE
Q 000936 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD---DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (1219)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~---Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~ 107 (1219)
..|.+||. .|.....+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+....|+|||+.
T Consensus 182 ~~l~~~d~-dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQ-DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECC-CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 47899997 45555667788889999999999998888763 468999999887653 44556677888999999997
Q ss_pred EE-EEECCCe--EEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEEC-CC--eEEEEECCCCccccccCCccceee
Q 000936 108 IV-SASDDQT--IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQ--TVRVWDIGALRKKTVSPADDILRL 181 (1219)
Q Consensus 108 l~-s~s~Dg~--I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg--~I~vwd~~~~~~~~~~~~~~~~~~ 181 (1219)
|+ +.+.++. |.+||+.+++. ..+..+........|+|+|+.++..+. +| .|.+||+.+....
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~----------- 327 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR----------- 327 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-----------
Confidence 75 5555554 77789887765 445556666778999999998887764 33 5777787653321
Q ss_pred ccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCeeeEEeecCCCCCeEEEEEcc
Q 000936 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1219)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp 258 (1219)
.+..+...+....|+|+|+.|+..+.+ ..|.+||+.++.. ..+. ....+....|+|
T Consensus 328 -----------------~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~---~~lt-~~~~~~~p~~sp 386 (435)
T PRK05137 328 -----------------RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE---RILT-SGFLVEGPTWAP 386 (435)
T ss_pred -----------------EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce---Eecc-CCCCCCCCeECC
Confidence 122234456678899999999877643 3688888766542 2222 223467789999
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeeEEEEecCCCCEEEEEEeC
Q 000936 259 KQDIIVSNSED------KSIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (1219)
Q Consensus 259 ~g~~L~s~s~d------g~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp 300 (1219)
||+.|+..+.+ ..+.++|+..+.. ..+. ....+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence 99988776543 2577888765543 3333 233455566665
No 234
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.48 E-value=1e-09 Score=119.84 Aligned_cols=152 Identities=14% Similarity=0.196 Sum_probs=121.6
Q ss_pred eecCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000936 201 EGHDRGVNWAAFHPTLPLIVSGADDR-QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1219)
Q Consensus 201 ~~~~~~V~~l~~sp~g~~l~sg~~dg-~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~ 279 (1219)
-+|.++|.-..+..+++-++.|..|| .+-++|..+++ +..+...-+.|.++..+|+|++++++.....|.+.|+.+
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce---EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 46778898888888888999999999 89999999987 667777889999999999999999999999999999999
Q ss_pred CeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCC
Q 000936 280 RTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRP 359 (1219)
Q Consensus 280 ~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~ 359 (1219)
+.....-+...+-|+.+.|||+++++|-+-..|.+ ...|++||+.+++...+.+...
T Consensus 433 gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~----------------------tq~Iklydm~~~Kiy~vTT~ta- 489 (668)
T COG4946 433 GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYY----------------------TQSIKLYDMDGGKIYDVTTPTA- 489 (668)
T ss_pred CCeeEecccccceeEEEEEcCCceeEEEecCccee----------------------eeeEEEEecCCCeEEEecCCcc-
Confidence 98776666667789999999999999988765543 4567888888777544332221
Q ss_pred CCCCCCCCCeEEEEccCCCEEEEEEe
Q 000936 360 GSTSLNQSPRTLSYSPTENAVLICSD 385 (1219)
Q Consensus 360 ~~~~~~~~i~~l~~spdg~~llv~~~ 385 (1219)
.-.+-+|.||++++...+.
T Consensus 490 -------~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 490 -------YDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred -------cccCcccCCCCcEEEEEec
Confidence 3344678888887766543
No 235
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=8.3e-12 Score=148.48 Aligned_cols=221 Identities=8% Similarity=0.006 Sum_probs=154.5
Q ss_pred eecccCCCEEEEEEeCCCCEEEEEEC---CCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEE-ECCC--eEEE
Q 000936 4 KFETKSNRVKGLSFHSKRPWILASLH---SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-GDDY--KIKV 77 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fspdg~~Lasg~~---dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasg-s~Dg--~I~v 77 (1219)
.+..+...+.+.+|||||+.|+..+. +..|.+|++.+|+... +....+.+....|||||+.|+.. +.+| .|.+
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 34456678999999999999987642 3579999998885433 22233445578999999988765 3344 5999
Q ss_pred EEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEE
Q 000936 78 WNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-Q--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (1219)
Q Consensus 78 Wd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~D-g--~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s 154 (1219)
||+++++.. .+..+...+....|+|||+.|+.++.+ + .|.++|+.+++.. .+..+.....+..|+|+|+.++..+
T Consensus 272 ~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 272 MDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred EECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEE
Confidence 999887654 344455677889999999988877764 4 4555577666543 3444445566789999999988766
Q ss_pred CC---CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCe---E
Q 000936 155 LD---QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ---V 228 (1219)
Q Consensus 155 ~d---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~---I 228 (1219)
.+ ..|.+||+.++.... +.. ........|+|||+.|+.++.++. +
T Consensus 350 ~~~g~~~I~~~dl~~g~~~~----------------------------Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 350 SNGGQQHIAKQDLATGGVQV----------------------------LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred ccCCCceEEEEECCCCCeEE----------------------------eCC-CCCCCCceECCCCCEEEEEEcCCCceEE
Confidence 44 358888987654221 111 112235789999999999887764 6
Q ss_pred EEEECCCCCeeeEEeecCCCCCeEEEEEccC
Q 000936 229 KLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1219)
Q Consensus 229 ~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~ 259 (1219)
.++++.... ...+.+|.+.+...+|+|-
T Consensus 401 ~~~~~~G~~---~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 401 NLVSTDGRF---KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEEECCCCC---eEECccCCCCcCCcccCCC
Confidence 777776555 4566778888889999873
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=7.5e-12 Score=149.08 Aligned_cols=235 Identities=9% Similarity=0.008 Sum_probs=158.3
Q ss_pred CeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECC---CeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCE
Q 000936 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (1219)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D---g~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~ 107 (1219)
..|.+||. +|.....+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+..|+|||+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 46777886 555555666788899999999999998877643 469999998886543 3334456678999999998
Q ss_pred EE-EEECCCeEEEEE--CCCCeEEEEEecCCCCeEEEEEecCCCEEEEEEC-CCeEEEEECC--CCccccccCCccceee
Q 000936 108 IV-SASDDQTIRIWN--WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQTVRVWDIG--ALRKKTVSPADDILRL 181 (1219)
Q Consensus 108 l~-s~s~Dg~I~iwd--~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~I~vwd~~--~~~~~~~~~~~~~~~~ 181 (1219)
|+ +.+.+|...||. ..++. ...+..+........|+|+|+.++..+. +|...+|.+. +....
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~----------- 321 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ----------- 321 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-----------
Confidence 76 456777766664 44444 4555556666677899999998876654 4666666553 22110
Q ss_pred ccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCeeeEEeecCCCCCeEEEEEcc
Q 000936 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR---QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1219)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp 258 (1219)
.... +........|+|+|++|+..+.++ .|.+||+.++.. ..+..+ .......|+|
T Consensus 322 ---------------~lt~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~---~~lt~~-~~~~~p~~sp 380 (427)
T PRK02889 322 ---------------RVTF--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV---TALTDT-TRDESPSFAP 380 (427)
T ss_pred ---------------EEec--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe---EEccCC-CCccCceECC
Confidence 1111 122234578999999998777654 699999988774 233222 2346789999
Q ss_pred CCCEEEEEeCCC---cEEEEeCCCCeeEEEEecCCCCEEEEEEeCC
Q 000936 259 KQDIIVSNSEDK---SIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1219)
Q Consensus 259 ~g~~L~s~s~dg---~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~ 301 (1219)
||+.|+..+.++ .+.+.+. ++.....+..+.+.+...+|+|-
T Consensus 381 dg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 381 NGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 999988877544 3555565 35555555555566677777763
No 237
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.46 E-value=5.5e-12 Score=132.47 Aligned_cols=258 Identities=17% Similarity=0.282 Sum_probs=176.8
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCe-----EEEEecccC------------CCEEEEEEecCCC--EEEEE
Q 000936 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT-----LIDRFDEHD------------GPVRGVHFHKSQP--LFVSG 69 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~-----~i~~l~~h~------------~~V~~l~fsp~~~--~Lasg 69 (1219)
.+-|.+|.|..+|.+||+|..+|.|.++.-.... ....++.|+ ..|..+.|.+++. .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999743221 334454554 4588999998765 67778
Q ss_pred ECCCeEEEEEcCCCeE-----------------------------------EEEE-ccCCCCEEEEEEcCCCCEEEEEEC
Q 000936 70 GDDYKIKVWNYKMHRC-----------------------------------LFTL-LGHLDYIRTVQFHHEYPWIVSASD 113 (1219)
Q Consensus 70 s~Dg~I~vWd~~~~~~-----------------------------------~~~l-~~h~~~I~~l~fs~d~~~l~s~s~ 113 (1219)
+.|.+|++|.+..... .+.+ ..|..-|.++.++.|...++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 8899999998743210 0011 35788899999999999888864
Q ss_pred CCeEEEEECCC-CeEE--EEEecCC-----CCeEEEEEecCC-CEEEEEECCCeEEEEECCCCccccccCCccceeeccc
Q 000936 114 DQTIRIWNWQS-RTCI--SVLTGHN-----HYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQM 184 (1219)
Q Consensus 114 Dg~I~iwd~~s-~~~i--~~~~~h~-----~~V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~ 184 (1219)
|=.|.+|+++- .+.. .-++.++ .-|++..|||.. +.++..+..|+|++-|++....-. .
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd------------~ 251 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD------------A 251 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc------------c
Confidence 77899999873 2222 2223332 458899999976 688888899999999998421100 0
Q ss_pred cccccc-cccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCC------------C-
Q 000936 185 NTDLFG-GVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN------------N- 250 (1219)
Q Consensus 185 ~~~~~~-~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~------------~- 250 (1219)
...++. ..+..-+.-+.+--..|..+.|+++|+++++-+. -+|++||++.... ++.+..-|.. .
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~-pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK-PVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC-cceEEeehHhHHHHHHHHhhccch
Confidence 000110 0111112223344567889999999999987643 6899999954322 2445444421 1
Q ss_pred --eEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000936 251 --VSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1219)
Q Consensus 251 --I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~ 281 (1219)
-..++|+.++.++++|+....+++++...|.
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2357899999999999999999999965543
No 238
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.46 E-value=1.1e-10 Score=129.16 Aligned_cols=373 Identities=12% Similarity=0.158 Sum_probs=238.0
Q ss_pred EEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC
Q 000936 34 QLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD 113 (1219)
Q Consensus 34 ~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~ 113 (1219)
.+|+..+...-..+....-++..++|||.|.+|++.... .|.+|....+..+..+. | ..|..+.|+|.+++|.+-+.
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeecc
Confidence 456655555555665577889999999999999987765 59999988776665554 4 45899999999999998765
Q ss_pred CC---------------eEEEEECCCCeEEEEEecCCCC--eE-EEEEecCCCEEEEEECCCeEEEEECCCCccccccCC
Q 000936 114 DQ---------------TIRIWNWQSRTCISVLTGHNHY--VM-CASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPA 175 (1219)
Q Consensus 114 Dg---------------~I~iwd~~s~~~i~~~~~h~~~--V~-~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~ 175 (1219)
.+ .+.+||..+|..+..+.+...+ .. -+.|+-+..+++-. ....+.++++ +..... .+
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~-~p- 167 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEE-HP- 167 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCcccc-Cc-
Confidence 43 4999999999999988766655 34 57888888766655 3457889987 322110 00
Q ss_pred ccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEE
Q 000936 176 DDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255 (1219)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~ 255 (1219)
...+ ...+|....|+|.++. ..+..|
T Consensus 168 ---------------------~~~l--r~~gi~dFsisP~~n~-------~~la~~------------------------ 193 (561)
T COG5354 168 ---------------------FKNL--RPVGILDFSISPEGNH-------DELAYW------------------------ 193 (561)
T ss_pred ---------------------hhhc--cccceeeEEecCCCCC-------ceEEEE------------------------
Confidence 0000 1345666677775411 111222
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEE
Q 000936 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA 335 (1219)
Q Consensus 256 ~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~ 335 (1219)
.|.- .+..+++++|.+..+..+.+.....-.-..+.|.+.|.++.+-..... ..+.-++
T Consensus 194 -tPEk-----~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~--------------ksnKsyf- 252 (561)
T COG5354 194 -TPEK-----LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHT--------------KSNKSYF- 252 (561)
T ss_pred -cccc-----CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEee--------------eccccee-
Confidence 2211 123445556665554444332222222235667777776554321110 0011111
Q ss_pred eCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCce
Q 000936 336 KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLG 415 (1219)
Q Consensus 336 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i 415 (1219)
.+..++++++.. ..+++.. + +.++|..++|+|.++.+++++|.....+.+++++.+.. .......-
T Consensus 253 gesnLyl~~~~e-~~i~V~~----~---~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~------~~~Pe~~r 318 (561)
T COG5354 253 GESNLYLLRITE-RSIPVEK----D---LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLR------FYFPEQKR 318 (561)
T ss_pred ccceEEEEeecc-cccceec----c---ccccceeeeecccCCceeEEecccccceeecccccceE------EecCCccc
Confidence 355677777773 3323221 1 13389999999999999999988888899999886521 22222333
Q ss_pred eEEEEEeCCeEEEEEcC---CCEEEEEecCCceeEe--eeCCcceEEEEEeCCCcEEEEe--------CCeEEEEEcCCC
Q 000936 416 GSAIFIARNRFAVLDKS---SNQVLVKNLKNEVVKK--SILPIAADAIFYAGTGNLLCRA--------EDRVVIFDLQQR 482 (1219)
Q Consensus 416 ~~~~fs~d~~~l~~~~~---dg~I~Iwdl~~~~~~~--i~~~~~v~~l~~s~dg~~L~s~--------d~~I~l~dl~~~ 482 (1219)
..+.|+|.++++++++- .|.+.+||..++.... +.+. ..+...|+|||.++.+. |..+.|||+...
T Consensus 319 NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 319 NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred ccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC-CceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 45889999999888654 4679999998764433 3333 55666799999999652 789999999665
Q ss_pred eEEEEEecCCeeEEEEcCCCCEEEEEe
Q 000936 483 LVLGDLQTPFVKYVVWSNDMESVALLS 509 (1219)
Q Consensus 483 ~~l~~~~~~~v~~v~ws~dg~~la~~s 509 (1219)
... ....+.|.|.|+++.+.+
T Consensus 398 ~~f------el~~~~W~p~~~~~ttsS 418 (561)
T COG5354 398 KVF------ELTNITWDPSGQYVTTSS 418 (561)
T ss_pred hhh------hhhhccccCCcccceeec
Confidence 543 356688999888765443
No 239
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.1e-12 Score=143.58 Aligned_cols=309 Identities=18% Similarity=0.178 Sum_probs=215.6
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-ecCCCCeEEEEEecCC--CEEEEEECCCeEEEE
Q 000936 86 LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-TGHNHYVMCASFHPKE--DLVVSASLDQTVRVW 162 (1219)
Q Consensus 86 ~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~-~~h~~~V~~l~~sp~~--~~l~s~s~dg~I~vw 162 (1219)
...+.+|.+.|..+.|+..|..++++|+|..|.+|||.+++....+ .+|...|....|-|.. ..+++++.||.|++-
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 4467789999999999999999999999999999999998877666 5899999999998854 689999999999998
Q ss_pred ECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeE
Q 000936 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEV 241 (1219)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sg~~dg~I~iwd~~~~~~~~~ 241 (1219)
.+....... -...+..|.++|..++.-|+.+ .|.+++.|+.+.-+|++.......
T Consensus 215 ~i~~t~~~e------------------------~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 215 EILETGYVE------------------------NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred eecccccee------------------------cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 764422111 0124567999999999999764 588999999999999988766444
Q ss_pred EeecCCCC----CeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCee------EEEEe------cCCCCEEEEEEeCC-CC
Q 000936 242 DTLRGHMN----NVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRTG------VQTFR------REHDRFWILASHPE-MN 303 (1219)
Q Consensus 242 ~~~~~h~~----~I~~l~~sp~g~-~L~s~s~dg~I~iwdl~~~~~------~~~~~------~~~~~i~~l~~sp~-~~ 303 (1219)
...+.+.. ....++..|... .+++++.|..+++||.+.-.. +..+- ...-.|++++++.+ +.
T Consensus 271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE 350 (559)
T KOG1334|consen 271 FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE 350 (559)
T ss_pred eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc
Confidence 44444433 367788888554 899999999999999764322 12222 12235889999954 45
Q ss_pred EEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEE-EccCCCEEEE
Q 000936 304 LLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLS-YSPTENAVLI 382 (1219)
Q Consensus 304 ~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~-~spdg~~llv 382 (1219)
++++-.+..+++|.-..... ...... .++ +....... .||.+ ...|..+- |-|... .|
T Consensus 351 lLaSYnDe~IYLF~~~~~~G------~~p~~~---s~~-------~~~~k~vY--KGHrN-~~TVKgVNFfGPrsE--yV 409 (559)
T KOG1334|consen 351 LLASYNDEDIYLFNKSMGDG------SEPDPS---SPR-------EQYVKRVY--KGHRN-SRTVKGVNFFGPRSE--YV 409 (559)
T ss_pred eeeeecccceEEeccccccC------CCCCCC---cch-------hhccchhh--ccccc-ccccceeeeccCccc--eE
Confidence 67776777777663322110 000000 000 00000011 23322 22566664 557766 44
Q ss_pred EEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC
Q 000936 383 CSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK 442 (1219)
Q Consensus 383 ~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~ 442 (1219)
+++++.|.|.||+-.. ++++..+.+....|.|+.=.|--.+|++++-|..|+||.-.
T Consensus 410 vSGSDCGhIFiW~K~t---~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 410 VSGSDCGHIFIWDKKT---GEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred EecCccceEEEEecch---hHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 6778999999999664 34444455666678888888888899999999999999864
No 240
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.44 E-value=5.2e-07 Score=115.42 Aligned_cols=472 Identities=11% Similarity=0.083 Sum_probs=253.1
Q ss_pred CCEEEEEEeCCCCEEEEEECC----CeEEEEECCCCe---EEEEec-----ccCCCEEEEEEecCCCEEEEEECCCeEEE
Q 000936 10 NRVKGLSFHSKRPWILASLHS----GVIQLWDYRMGT---LIDRFD-----EHDGPVRGVHFHKSQPLFVSGGDDYKIKV 77 (1219)
Q Consensus 10 ~~V~~i~fspdg~~Lasg~~d----g~I~iWd~~~g~---~i~~l~-----~h~~~V~~l~fsp~~~~Lasgs~Dg~I~v 77 (1219)
..+...+|.+....+.++... ..|.+.....+. .+..+. ...+.|.++.|-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 367888888876655444332 234444443322 344443 34578999999999999999999999999
Q ss_pred E----EcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEE
Q 000936 78 W----NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153 (1219)
Q Consensus 78 W----d~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~ 153 (1219)
. +..+.. +.....-...|.+++||||+..|+.++.++++.+-+ .+...+....-+.... .....++.
T Consensus 102 ~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~-------~~~~~VsV 172 (928)
T PF04762_consen 102 VREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDF-------GESKHVSV 172 (928)
T ss_pred EEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCcccc-------CCCceeee
Confidence 9 544332 222223456899999999999999999999888775 4555555444332110 11233443
Q ss_pred ECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeC------CCe
Q 000936 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD------DRQ 227 (1219)
Q Consensus 154 s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~------dg~ 227 (1219)
+....=.-|.-+.++..... . ....+- ..-...+. ++..-..++|-.||.++++.+- -+.
T Consensus 173 GWGkKeTQF~Gs~gK~aa~~-----~----~~p~~~----~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~ 238 (928)
T PF04762_consen 173 GWGKKETQFHGSAGKAAARQ-----L----RDPTVP----KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRV 238 (928)
T ss_pred ccCcccCccCcchhhhhhhh-----c----cCCCCC----ccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeE
Confidence 33221111111111110000 0 000000 00001223 5566778999999999998874 257
Q ss_pred EEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCeeEEEEec----CCCCEEEEEEeC
Q 000936 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSE---DKSIRVWDVTKRTGVQTFRR----EHDRFWILASHP 300 (1219)
Q Consensus 228 I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~---dg~I~iwdl~~~~~~~~~~~----~~~~i~~l~~sp 300 (1219)
+++|+-. +.. ..+...-.+--.+++|.|.|++|++... ...|.+|. ++|-....|.. ....+..+.|++
T Consensus 239 iRVy~Re-G~L--~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 239 IRVYSRE-GEL--QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNS 314 (928)
T ss_pred EEEECCC-ceE--EeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECC
Confidence 9999876 332 2222222333456899999999998764 34577777 45555555543 345789999999
Q ss_pred CCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeC--CeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEc----
Q 000936 301 EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKD--RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYS---- 374 (1219)
Q Consensus 301 ~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s---- 374 (1219)
++..||+...+.+.+|....-.- -... .+.+... .....||......+.+.... +..........+..+
T Consensus 315 ds~iLAv~~~~~vqLWt~~NYHW--YLKq-ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~--g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 315 DSEILAVWLEDRVQLWTRSNYHW--YLKQ-EIRFSSSESVNFVKWDPEKPLRLHVLTSN--GQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred CCCEEEEEecCCceEEEeeCCEE--EEEE-EEEccCCCCCCceEECCCCCCEEEEEecC--CcEEEEEEEEEEEecCCCC
Confidence 99999998888888886543211 0000 0000101 11133444433222222110 100000001111112
Q ss_pred cCC-CEEEEEEeCCCCEEEEEEecCCCCCCCccc-cccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCCcee------
Q 000936 375 PTE-NAVLICSDVDGGSYELYVIPKDSIGRGDSV-QDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVV------ 446 (1219)
Q Consensus 375 pdg-~~llv~~~~~dg~i~l~~~~~~~~~~~~~~-~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~------ 446 (1219)
|++ ..++|..| ..+.+-.+........... .-.....|..++|++++..++.-..||.|.+|.......
T Consensus 390 ~~D~g~vaVIDG---~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~ 466 (928)
T PF04762_consen 390 PNDNGTVAVIDG---NKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPP 466 (928)
T ss_pred ccCceEEEEEeC---CeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCc
Confidence 222 23334333 5677766654432211100 112245789999999986555555599999998652111
Q ss_pred ---EeeeC-----------CcceEEEEEeCCCcEEEEe--C---CeEEEEEcCCCe---EEEEEec--CCeeEEEEcCCC
Q 000936 447 ---KKSIL-----------PIAADAIFYAGTGNLLCRA--E---DRVVIFDLQQRL---VLGDLQT--PFVKYVVWSNDM 502 (1219)
Q Consensus 447 ---~~i~~-----------~~~v~~l~~s~dg~~L~s~--d---~~I~l~dl~~~~---~l~~~~~--~~v~~v~ws~dg 502 (1219)
..+.. ...+..+.|..+..+++.. + ..+.++++...+ .+..... ..+..+...++.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (928)
T PF04762_consen 467 KLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDS 546 (928)
T ss_pred chhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCC
Confidence 11111 1167888888887776543 2 578888874432 2222221 344455555555
Q ss_pred CEEEEEe-CCeEEEE
Q 000936 503 ESVALLS-KHAIIIA 516 (1219)
Q Consensus 503 ~~la~~s-~~~i~i~ 516 (1219)
..+++.. ++.++.+
T Consensus 547 ~~~~~q~~~G~v~~~ 561 (928)
T PF04762_consen 547 GSLYIQTNDGKVFQL 561 (928)
T ss_pred cEEEEEECCCEEEEe
Confidence 4333333 3445543
No 241
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.3e-11 Score=147.55 Aligned_cols=221 Identities=13% Similarity=0.057 Sum_probs=154.0
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEE-EEECCC--eEE
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHS---GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFV-SGGDDY--KIK 76 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~d---g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~La-sgs~Dg--~I~ 76 (1219)
+.+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +..+.+...+.+|+|+|+.++ +.+.+| .|.
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 3456677789999999999999987643 469999998876533 334455566889999999775 445444 699
Q ss_pred EEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC-CCe--EEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEE
Q 000936 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQT--IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153 (1219)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~-Dg~--I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~ 153 (1219)
+||+.+++. ..+..+.......+|+||+++|+.++. +|. |.++|+.+++... +..+.......+|+|+|+.++..
T Consensus 276 ~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 276 VMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEE
Confidence 999988764 445556666678899999998887764 444 7777777766433 32333445578999999998877
Q ss_pred ECCC---eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCC---Ce
Q 000936 154 SLDQ---TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQ 227 (1219)
Q Consensus 154 s~dg---~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~d---g~ 227 (1219)
+.++ .|.+||+.+++... +. +........|+|+|+.++..+.+ +.
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~~----------------------------Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVRT----------------------------LT-PGSLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred ECCCCceeEEEEECCCCCeEE----------------------------CC-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence 6443 68999987644321 11 11123456899999988776653 35
Q ss_pred EEEEECCCCCeeeEEeecCCCCCeEEEEEcc
Q 000936 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1219)
Q Consensus 228 I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp 258 (1219)
|.+++..... ...+..+.+.+...+|+|
T Consensus 405 L~~~~~~g~~---~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTDGRV---RQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEECCCCc---eEEcccCCCCCCCCccCC
Confidence 7777876544 444555566777778876
No 242
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2.9e-11 Score=144.80 Aligned_cols=221 Identities=13% Similarity=0.047 Sum_probs=155.8
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEEC---CCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEE-EEECCC--eEE
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLH---SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFV-SGGDDY--KIK 76 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~---dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~La-sgs~Dg--~I~ 76 (1219)
+.+..|...+.+.+|||||++|+..+. +..|.+||+.+|+.. .+..+.+.+.+.+|+|||+.|+ +.+.++ .|.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 456778889999999999999988764 468999999888653 4556677888999999999775 445454 478
Q ss_pred EEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEE
Q 000936 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153 (1219)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~-Dg--~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~ 153 (1219)
+||+.++.. ..+..+........|+||+++|+..+. +| .|.+||+.+++.. .+..+...+....|+|+|+.|+..
T Consensus 274 ~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEE
Confidence 889887654 456666667788999999998887764 33 6888898766543 343345556778999999999887
Q ss_pred ECC---CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCC-----
Q 000936 154 SLD---QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD----- 225 (1219)
Q Consensus 154 s~d---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~d----- 225 (1219)
+.+ ..|.+||+.+.... .+. ....+....|+|+|+.|+..+.+
T Consensus 352 ~~~~~~~~i~~~d~~~~~~~----------------------------~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGER----------------------------ILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred EcCCCceEEEEEECCCCceE----------------------------ecc-CCCCCCCCeECCCCCEEEEEEccCCCCC
Confidence 653 35788887543211 111 12235678999999988776543
Q ss_pred -CeEEEEECCCCCeeeEEeecCCCCCeEEEEEccC
Q 000936 226 -RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1219)
Q Consensus 226 -g~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~ 259 (1219)
..+.++++.+... ..+. ..+.+...+|+|-
T Consensus 403 ~~~L~~~dl~g~~~---~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 403 APKLYTVDLTGRNE---REVP-TPGDASDPAWSPL 433 (435)
T ss_pred cceEEEEECCCCce---EEcc-CCCCccCcccCCC
Confidence 2577788876653 3333 2345667778763
No 243
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.1e-10 Score=130.88 Aligned_cols=302 Identities=15% Similarity=0.190 Sum_probs=203.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEE-----eC-----CCcEE
Q 000936 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN-----SE-----DKSIR 273 (1219)
Q Consensus 204 ~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~-----s~-----dg~I~ 273 (1219)
..+.+..+++++|++++.+. +..++|++...... +.+.... .+..+.|+|.|.+|.+- .. .-.+.
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~--~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKV--VLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcE--EEEeccc--eeeeeeecccccccccccccccccCCCCCCCcee
Confidence 44477889999998777654 67899999888763 3333322 78999999999998762 11 23478
Q ss_pred EEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcc-------------eEEecC--CEEEEE---
Q 000936 274 VWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP-------------AFAVSG--DSLFYA--- 335 (1219)
Q Consensus 274 iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~-------------~~s~~~--~~l~~~--- 335 (1219)
+|++.++.....+......-|+..|+.|..+.+--..+.+.+|++..-+. .+++.+ ..+++-
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 99999966666665554444899999998877655566677776655322 222221 133322
Q ss_pred ---eCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeC--C--------CCEEEEEEecCCCCC
Q 000936 336 ---KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDV--D--------GGSYELYVIPKDSIG 402 (1219)
Q Consensus 336 ---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~--~--------dg~i~l~~~~~~~~~ 402 (1219)
.-..+++|.............+..- ...--.+.|++-|..+++...+ | ..++.++.+.+...
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFF----kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~- 263 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFF----KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV- 263 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhcccc----ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE-
Confidence 3456777776632221111111100 1133457899988877765443 1 13455555553221
Q ss_pred CCccccccccCceeEEEEEeCCeE--EEEEcCCCEEEEEecCCceeEeeeCCcceEEEEEeCCCcEEEEe-----CCeEE
Q 000936 403 RGDSVQDAKKGLGGSAIFIARNRF--AVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRA-----EDRVV 475 (1219)
Q Consensus 403 ~~~~~~~~~~~~i~~~~fs~d~~~--l~~~~~dg~I~Iwdl~~~~~~~i~~~~~v~~l~~s~dg~~L~s~-----d~~I~ 475 (1219)
. ..-...++|.+++|+++++- ++.|-.-.++.|+|+++..+..+. ..+-+.+.|+|.|++++.. .|.+.
T Consensus 264 --~-V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 264 --S-VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDME 339 (566)
T ss_pred --E-EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCceE
Confidence 1 22345789999999999953 455666788999999988876663 3367899999999999663 59999
Q ss_pred EEEcCCCeEEEEEecCCeeEEEEcCCCCEEEEEeC-------CeEEEEecC
Q 000936 476 IFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSK-------HAIIIASKK 519 (1219)
Q Consensus 476 l~dl~~~~~l~~~~~~~v~~v~ws~dg~~la~~s~-------~~i~i~~~~ 519 (1219)
+||+.+.+.+..+.....+.+.|+|||+++.+++. +++-||++.
T Consensus 340 vwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 99999999999999988999999999999977765 445566543
No 244
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.42 E-value=1.1e-10 Score=129.21 Aligned_cols=349 Identities=11% Similarity=0.087 Sum_probs=231.6
Q ss_pred ecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCC-----------
Q 000936 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY----------- 73 (1219)
Q Consensus 5 l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg----------- 73 (1219)
++...-++..++|||.|.+|++....| |.+|....+..+.++. | ..|..+.|||.+++|++-+..+
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCc
Confidence 344556788999999999999886555 9999988877666663 3 4589999999999999986533
Q ss_pred ----eEEEEEcCCCeEEEEEccCCCC--EE-EEEEcCCCCEEEEEECCCeEEEEECCCCeEE-EEEe-cCCCCeEEEEEe
Q 000936 74 ----KIKVWNYKMHRCLFTLLGHLDY--IR-TVQFHHEYPWIVSASDDQTIRIWNWQSRTCI-SVLT-GHNHYVMCASFH 144 (1219)
Q Consensus 74 ----~I~vWd~~~~~~~~~l~~h~~~--I~-~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i-~~~~-~h~~~V~~l~~s 144 (1219)
.+.|||+.+|..+..+.+...+ .+ -+.|+-+.++++-. ....+.|+++ ++..- ..+. .....|....|+
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsis 182 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSIS 182 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEec
Confidence 5999999999999999877665 55 68899888876654 3457999997 33221 1111 113557888888
Q ss_pred cCCC--EEEE-----EECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCC
Q 000936 145 PKED--LVVS-----ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP 217 (1219)
Q Consensus 145 p~~~--~l~s-----~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~ 217 (1219)
|.++ .|+. ....+++++|.+...+.... ..-....-..+.|++.|+
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t---------------------------k~lfk~~~~qLkW~~~g~ 235 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT---------------------------KNLFKVSGVQLKWQVLGK 235 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeee---------------------------eeeEeecccEEEEecCCc
Confidence 8753 3332 34577888888874332210 000111223467777777
Q ss_pred EEEEEe-----------CCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCeeEE
Q 000936 218 LIVSGA-----------DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS--EDKSIRVWDVTKRTGVQ 284 (1219)
Q Consensus 218 ~l~sg~-----------~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s--~dg~I~iwdl~~~~~~~ 284 (1219)
++++-. ....+.++++..... .......++|...+|.|.++.+++.+ .+-.+.++|++.. ..
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i---~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~- 310 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSI---PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR- 310 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeeccccc---ceeccccccceeeeecccCCceeEEecccccceeecccccc-eE-
Confidence 655421 234578888875542 22235678999999999988776554 6778999998765 22
Q ss_pred EEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCC
Q 000936 285 TFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSL 364 (1219)
Q Consensus 285 ~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 364 (1219)
+......-..+.|+|.++++....-+. ..+.+.+||..+.... .-.+.. .
T Consensus 311 -~~~Pe~~rNT~~fsp~~r~il~agF~n-----------------------l~gni~i~~~~~rf~~-~~~~~~--~--- 360 (561)
T COG5354 311 -FYFPEQKRNTIFFSPHERYILFAGFDN-----------------------LQGNIEIFDPAGRFKV-AGAFNG--L--- 360 (561)
T ss_pred -EecCCcccccccccCcccEEEEecCCc-----------------------cccceEEeccCCceEE-EEEeec--C---
Confidence 223344446678999998877654322 2566777776653221 112221 1
Q ss_pred CCCCeEEEEccCCCEEEEEEeC----CCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCC
Q 000936 365 NQSPRTLSYSPTENAVLICSDV----DGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSS 433 (1219)
Q Consensus 365 ~~~i~~l~~spdg~~llv~~~~----~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~d 433 (1219)
..+-..|+||+.++.+...+ .|..+.||++.+...- ..+.+.|-|.+++..+.+..
T Consensus 361 --n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-----------el~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 361 --NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-----------ELTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred --CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh-----------hhhhccccCCcccceeeccC
Confidence 34456899999988877654 4678999998764321 34568888888887776643
No 245
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=6.8e-11 Score=131.47 Aligned_cols=321 Identities=13% Similarity=0.193 Sum_probs=204.9
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEEC-----------CCeEEEEEcC
Q 000936 13 KGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD-----------DYKIKVWNYK 81 (1219)
Q Consensus 13 ~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~-----------Dg~I~vWd~~ 81 (1219)
+-+.|||.|.||++--..| |.+|--++-..+++| .|.+ |.-+.|||..+||+|-+. ...++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhc-cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 5689999999999986666 999987766677777 4665 889999999999999763 2589999999
Q ss_pred CCeEEEEEccC--CCCE-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECC--
Q 000936 82 MHRCLFTLLGH--LDYI-RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD-- 156 (1219)
Q Consensus 82 ~~~~~~~l~~h--~~~I-~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d-- 156 (1219)
+|.....+... ...+ .-..||.|++++|.-.. .+|.||+..+-.++-.-.-.-..|....|+|.+++|+.=+..
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~ 369 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN 369 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence 99988877642 2222 34689999999988776 569999877644443333344668889999998777653321
Q ss_pred ---CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEE----------e
Q 000936 157 ---QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG----------A 223 (1219)
Q Consensus 157 ---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg----------~ 223 (1219)
..+.+..+.+.+.... ..++...+ ..+-|-.+|.+|+.- +
T Consensus 370 ~~parvtL~evPs~~~iRt-------------~nlfnVsD--------------ckLhWQk~gdyLcvkvdR~tK~~~~g 422 (698)
T KOG2314|consen 370 NIPARVTLMEVPSKREIRT-------------KNLFNVSD--------------CKLHWQKSGDYLCVKVDRHTKSKVKG 422 (698)
T ss_pred CCcceEEEEecCccceeee-------------ccceeeec--------------cEEEeccCCcEEEEEEEeeccccccc
Confidence 1233444433222110 01111111 223444555555432 2
Q ss_pred CCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCC-Ce---eEEEEecCCCCEEEE
Q 000936 224 DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSE---DKSIRVWDVTK-RT---GVQTFRREHDRFWIL 296 (1219)
Q Consensus 224 ~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~---dg~I~iwdl~~-~~---~~~~~~~~~~~i~~l 296 (1219)
.-..+-|+.++.... ++..+ .-...|...+|-|.|+.+++-+. ..++.+|.+.+ .. .+..+ .....+.+
T Consensus 423 ~f~n~eIfrireKdI-pve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~--dk~~~N~v 498 (698)
T KOG2314|consen 423 QFSNLEIFRIREKDI-PVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL--DKKFANTV 498 (698)
T ss_pred eEeeEEEEEeeccCC-Cceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh--cccccceE
Confidence 222456777766553 23222 23467889999999998876553 34688888763 21 22222 22457789
Q ss_pred EEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccC
Q 000936 297 ASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPT 376 (1219)
Q Consensus 297 ~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 376 (1219)
.|+|.|++++++.-.+ ..+.+.++|..-.....+... .| . ..+.+.|.|.
T Consensus 499 fwsPkG~fvvva~l~s-----------------------~~g~l~F~D~~~a~~k~~~~~---eh-~---~at~veWDPt 548 (698)
T KOG2314|consen 499 FWSPKGRFVVVAALVS-----------------------RRGDLEFYDTDYADLKDTASP---EH-F---AATEVEWDPT 548 (698)
T ss_pred EEcCCCcEEEEEEecc-----------------------cccceEEEecchhhhhhccCc---cc-c---ccccceECCC
Confidence 9999999998876322 367788888774222111111 11 1 5677999999
Q ss_pred CCEEEEEEeC----CCCEEEEEEecC
Q 000936 377 ENAVLICSDV----DGGSYELYVIPK 398 (1219)
Q Consensus 377 g~~llv~~~~----~dg~i~l~~~~~ 398 (1219)
|++++.++.. .+..++||++.+
T Consensus 549 GRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 549 GRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred CCEEEEeeehhhhccccceEEEEeec
Confidence 9998877653 233456666654
No 246
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.4e-11 Score=146.64 Aligned_cols=222 Identities=11% Similarity=0.043 Sum_probs=150.0
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEE-EEECCCeEEEE
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHS---GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFV-SGGDDYKIKVW 78 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~d---g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~La-sgs~Dg~I~vW 78 (1219)
+.+..+...+.+.+|||||++|+..+.. ..|.+||+.+|+... +....+.+.+.+|+|||+.|+ +.+.+|...+|
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 3455677889999999999999887643 459999998886543 333455677899999999886 45677776666
Q ss_pred E--cCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC-CCeEEEEE--CCCCeEEEEEecCCCCeEEEEEecCCCEEEEE
Q 000936 79 N--YKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQTIRIWN--WQSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153 (1219)
Q Consensus 79 d--~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~-Dg~I~iwd--~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~ 153 (1219)
. ..++. ...+..+........|+|||++|+..+. +|...+|. ..+++... +..+........|+|+|++|+..
T Consensus 268 ~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 268 TVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAYI 345 (427)
T ss_pred EEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEEE
Confidence 5 44443 4556656666678899999998887664 45666664 44554322 22233344568899999999887
Q ss_pred ECCC---eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCC---e
Q 000936 154 SLDQ---TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR---Q 227 (1219)
Q Consensus 154 s~dg---~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg---~ 227 (1219)
+.++ .|.+||+.+++... +. .........|+|+|+.|+..+.++ .
T Consensus 346 s~~~g~~~I~v~d~~~g~~~~----------------------------lt-~~~~~~~p~~spdg~~l~~~~~~~g~~~ 396 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQVTA----------------------------LT-DTTRDESPSFAPNGRYILYATQQGGRSV 396 (427)
T ss_pred EccCCcEEEEEEECCCCCeEE----------------------------cc-CCCCccCceECCCCCEEEEEEecCCCEE
Confidence 7654 69999987754321 11 112235679999999888877544 3
Q ss_pred EEEEECCCCCeeeEEeecCCCCCeEEEEEccC
Q 000936 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1219)
Q Consensus 228 I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~ 259 (1219)
+.+.+..... ...+..+.+.+...+|+|-
T Consensus 397 l~~~~~~g~~---~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 397 LAAVSSDGRI---KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEECCCCc---eEEeecCCCCCCCCccCCC
Confidence 5555554332 4445556677777888874
No 247
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=2.3e-10 Score=127.39 Aligned_cols=321 Identities=13% Similarity=0.160 Sum_probs=203.4
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEEC-----------CCeEEEEE
Q 000936 95 YIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-----------DQTVRVWD 163 (1219)
Q Consensus 95 ~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~-----------dg~I~vwd 163 (1219)
.-+-+.|||.|.+|+|-...| |.+|--.+-..++.+. |. .|.-+.|||..++|+|-+. ...++|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 346689999999999988665 8899766655555555 54 4888999999999998652 26799999
Q ss_pred CCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEe
Q 000936 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 243 (1219)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~ 243 (1219)
+.++..+...+. +.+....-.-..||.|+++++.-.. ..|.||+...-.......
T Consensus 289 I~tG~lkrsF~~------------------------~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks 343 (698)
T KOG2314|consen 289 IATGLLKRSFPV------------------------IKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS 343 (698)
T ss_pred ccccchhcceec------------------------cCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc
Confidence 999876543221 1111122234689999999988776 568899876644322222
Q ss_pred ecCCCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEe
Q 000936 244 LRGHMNNVSCVMFHAKQDIIVSNSED-----KSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1219)
Q Consensus 244 ~~~h~~~I~~l~~sp~g~~L~s~s~d-----g~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l 318 (1219)
-.-..|....|+|.+++||-=+.. ..+.+..+.+++.+.+...++-.-..+-|-.+|.+|+.-.+....
T Consensus 344 --lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK---- 417 (698)
T KOG2314|consen 344 --LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTK---- 417 (698)
T ss_pred --cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecc----
Confidence 234568888999999988864432 246777777777776655444333456677788887765432110
Q ss_pred cCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeC-CCCEEEEEEec
Q 000936 319 ERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDV-DGGSYELYVIP 397 (1219)
Q Consensus 319 ~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~-~dg~i~l~~~~ 397 (1219)
.. +-+.-..+.++.+.. +.+++..+.- ...+-..+|-|.|..+++.++. ...++.+|.+.
T Consensus 418 --~~----------~~g~f~n~eIfrire-KdIpve~vel------ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e 478 (698)
T KOG2314|consen 418 --SK----------VKGQFSNLEIFRIRE-KDIPVEVVEL------KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVE 478 (698)
T ss_pred --cc----------ccceEeeEEEEEeec-cCCCceeeec------chheeeeeeccCCCeEEEEEccccccceeEEEee
Confidence 00 000112345555554 2333333221 1278889999999998887764 34578888887
Q ss_pred CCC-CCCCccccccccCceeEEEEEeCCeEEEEEc---CCCEEEEEecCCceeEeee--CCcceEEEEEeCCCcEEEEe
Q 000936 398 KDS-IGRGDSVQDAKKGLGGSAIFIARNRFAVLDK---SSNQVLVKNLKNEVVKKSI--LPIAADAIFYAGTGNLLCRA 470 (1219)
Q Consensus 398 ~~~-~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~---~dg~I~Iwdl~~~~~~~i~--~~~~v~~l~~s~dg~~L~s~ 470 (1219)
... ...++..++. ...+.+-|+|.|++++.+. ..|.+..+|++....+... .|...+.+.|.|.|++++++
T Consensus 479 ~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ 555 (698)
T KOG2314|consen 479 TNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTS 555 (698)
T ss_pred cCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEe
Confidence 432 2222222222 3467789999999987764 4677888888742222222 23366777777777777653
No 248
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=3.1e-11 Score=134.67 Aligned_cols=277 Identities=13% Similarity=0.157 Sum_probs=198.9
Q ss_pred ccCCCEEEEEEeCCCCEEE-EEECCCeEEEEECCCCeEEEEeccc--CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 000936 7 TKSNRVKGLSFHSKRPWIL-ASLHSGVIQLWDYRMGTLIDRFDEH--DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (1219)
Q Consensus 7 ~h~~~V~~i~fspdg~~La-sg~~dg~I~iWd~~~g~~i~~l~~h--~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~ 83 (1219)
+|+..-+.|..+|||+|++ +|..--.|++||+.+-.+- |.-| ...|.-.-.+.|-..++.-..|.+|-+-.- -|
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YG 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhh-cC
Confidence 3667788999999999875 5566789999998765433 3333 344555555666666666677777766542 22
Q ss_pred eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEE
Q 000936 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163 (1219)
Q Consensus 84 ~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd 163 (1219)
.. +++. -...-+.++++.-+--|++++....|+-+|++.|..+..+....+.++++..++-..+|++|+.+|.|..||
T Consensus 126 ~h-y~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 126 RH-YRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred ee-eeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 22 1221 223446677776655577777777899999999999999988889999999999999999999999999999
Q ss_pred CCCCccccccCCccceeeccccccccccccceEEEEEeec-----CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 000936 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-----DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1219)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~ 238 (1219)
.+.......... ......| ...|+++.|+.+|-.+++|+.+|.|.|||++..++
T Consensus 204 pR~ksrv~~l~~---------------------~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 204 PRDKSRVGTLDA---------------------ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred chhhhhheeeec---------------------ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 987543221110 0011223 34599999999999999999999999999999886
Q ss_pred eeEEeecCCCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCC
Q 000936 239 WEVDTLRGHMNNVSCVMFHAK--QDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSG 312 (1219)
Q Consensus 239 ~~~~~~~~h~~~I~~l~~sp~--g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~g 312 (1219)
.. ..-.+..-+|..+.|.+. +..+++.. ...++|||-.+|+....+.... .+..+++-|++.++.++.+++
T Consensus 263 l~-~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 263 LL-VKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred ee-ecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCC
Confidence 32 222334557888999775 44555553 4679999999999887776444 488899999888888776543
No 249
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3.6e-10 Score=126.81 Aligned_cols=361 Identities=10% Similarity=0.160 Sum_probs=229.4
Q ss_pred eEEEEEcCCCeEEEEEccC---CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEE
Q 000936 74 KIKVWNYKMHRCLFTLLGH---LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150 (1219)
Q Consensus 74 ~I~vWd~~~~~~~~~l~~h---~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l 150 (1219)
.+.+|+.-......+...+ ..+++..+++++|++++.+ .++.++|++..++..+.+.... .+.++.|+|.++++
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL 88 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYL 88 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeeccccccc
Confidence 5778876543333333333 4456788899998766665 5778999999888644444432 78999999999888
Q ss_pred EEE-----ECC-----CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEE
Q 000936 151 VSA-----SLD-----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220 (1219)
Q Consensus 151 ~s~-----s~d-----g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~ 220 (1219)
.+= ..+ -.+.+|++.+..... .+......-++..|++|.. ++
T Consensus 89 ~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s---------------------------~~q~k~Q~~W~~qfs~dEs-l~ 140 (566)
T KOG2315|consen 89 LTWEPWAIYGPKNASNPNVLVYNVETGVQRS---------------------------QIQKKMQNGWVPQFSIDES-LA 140 (566)
T ss_pred ccccccccccCCCCCCCceeeeeeccceehh---------------------------heehhhhcCcccccccchh-hh
Confidence 652 112 235677776622211 1111111115778888865 33
Q ss_pred EEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCC--CEEEE-----EeCCCcEEEEeCCCCeeEEEEe---cCC
Q 000936 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ--DIIVS-----NSEDKSIRVWDVTKRTGVQTFR---REH 290 (1219)
Q Consensus 221 sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g--~~L~s-----~s~dg~I~iwdl~~~~~~~~~~---~~~ 290 (1219)
.--..+.+.+|+..+.+. ..-.-|...|+.+.+||.+ ..+++ .+.-+.++||........+... -..
T Consensus 141 arlv~nev~f~~~~~f~~---~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk 217 (566)
T KOG2315|consen 141 ARLVSNEVQFYDLGSFKT---IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK 217 (566)
T ss_pred hhhhcceEEEEecCCccc---eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccc
Confidence 333457899999988553 3334467789999999863 34443 3445679999876322211110 011
Q ss_pred CCEEEEEEeCCCCEEE--EEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCC
Q 000936 291 DRFWILASHPEMNLLA--AGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSP 368 (1219)
Q Consensus 291 ~~i~~l~~sp~~~~la--~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i 368 (1219)
..-..+.|.+-|+-|. +.++ ++.. +.-+| .+.+++++++.+.. ..+++.+ +++|
T Consensus 218 adkvqm~WN~~gt~LLvLastd-------VDkt--------n~SYY-GEq~Lyll~t~g~s--~~V~L~k------~GPV 273 (566)
T KOG2315|consen 218 ADKVQMKWNKLGTALLVLASTD-------VDKT--------NASYY-GEQTLYLLATQGES--VSVPLLK------EGPV 273 (566)
T ss_pred cceeEEEeccCCceEEEEEEEe-------ecCC--------Ccccc-ccceEEEEEecCce--EEEecCC------CCCc
Confidence 1223567777665332 2221 0000 11111 35567777777322 2444444 3499
Q ss_pred eEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcC---CCEEEEEecCC-c
Q 000936 369 RTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKS---SNQVLVKNLKN-E 444 (1219)
Q Consensus 369 ~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~---dg~I~Iwdl~~-~ 444 (1219)
.++.|+|+|+-++++.|..-..+.||++..... .+-..++-..+-|+|.|++++.++- .|.+.|||+.+ +
T Consensus 274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v------~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV------FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred eEEEECCCCCEEEEEEecccceEEEEcCCCCEe------EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence 999999999999999999889999999886543 3344555567999999999988774 47899999985 3
Q ss_pred eeEeeeCCcceEEEEEeCCCcEEEEe--------CCeEEEEEcCCCeEEEEEecC-CeeEEEEcC
Q 000936 445 VVKKSILPIAADAIFYAGTGNLLCRA--------EDRVVIFDLQQRLVLGDLQTP-FVKYVVWSN 500 (1219)
Q Consensus 445 ~~~~i~~~~~v~~l~~s~dg~~L~s~--------d~~I~l~dl~~~~~l~~~~~~-~v~~v~ws~ 500 (1219)
.+.++... ..+-..|+|||.++++. |+.++||+. +|..+..-... ....+.|-|
T Consensus 348 ~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 348 LIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKSELLQVEWRP 410 (566)
T ss_pred hccccccC-CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhHhHhheeeee
Confidence 44444443 45667899999999763 789999998 56666555443 477788876
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=2.8e-10 Score=136.26 Aligned_cols=198 Identities=23% Similarity=0.345 Sum_probs=159.1
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCC-----EEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 000936 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGP-----VRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~-----V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~ 83 (1219)
++.|..-.+.-+...++.++.+..+.+||...+....... +... ..-+-++++.-++++|+--+.|.+|+....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence 3445555555667788899999999999998877766653 3322 222334666678999999999999998744
Q ss_pred eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EEecCCCCeEEEEEecCCCEEEEEECCCeEEEE
Q 000936 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS-VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1219)
Q Consensus 84 ~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~-~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vw 162 (1219)
+.-..+.+|.+.|..+.|+.||.++++.|+|.++|+|++.+++... +.-+|+..|..+.|+|+ .+++++.|.+.++|
T Consensus 166 n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW 243 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVW 243 (967)
T ss_pred CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEE
Confidence 4434688999999999999999999999999999999999988776 67789999999999988 89999999999999
Q ss_pred ECCCCccccccCCccceeeccccccccccccceEEEEEeecC-CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 000936 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (1219)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~ 237 (1219)
+...... ....+|. +.+..++.+++....++++.|+.+++|++....
T Consensus 244 ~~~~~~l----------------------------~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 244 GVNGTQL----------------------------EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred eccccee----------------------------hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 7654221 1344554 568889999999999999999999999987643
No 251
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.39 E-value=1.2e-11 Score=136.92 Aligned_cols=218 Identities=14% Similarity=0.177 Sum_probs=153.5
Q ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEE----EecccCCCEEEEEE-----ecCCCEEEEEECCCeEEEEEcC
Q 000936 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLID----RFDEHDGPVRGVHF-----HKSQPLFVSGGDDYKIKVWNYK 81 (1219)
Q Consensus 11 ~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~----~l~~h~~~V~~l~f-----sp~~~~Lasgs~Dg~I~vWd~~ 81 (1219)
.++...++-.|.+|+.. ....+.+|+++.+..+. ...-....-+|-+| .|.+--+..|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFn-vg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFN-VGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEe-cCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 34455556667777665 34569999987543221 11111112234444 3455568888888999998876
Q ss_pred CCeEEEEE----ccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCC--------------C--------------eEE
Q 000936 82 MHRCLFTL----LGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQS--------------R--------------TCI 128 (1219)
Q Consensus 82 ~~~~~~~l----~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s--------------~--------------~~i 128 (1219)
..+....+ .-....|+|+.|-|.+. .++.+-.+|.+.++|..- + .++
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 52211111 12346899999999665 666777899999997531 1 111
Q ss_pred EEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeE
Q 000936 129 SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (1219)
Q Consensus 129 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 208 (1219)
..+.-..+.|...+|+|||++|++.+.||.+||||..+.+... .....-++..
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---------------------------~mkSYFGGLL 336 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG---------------------------VMKSYFGGLL 336 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH---------------------------HHHhhccceE
Confidence 1222233568889999999999999999999999998754332 3344567899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEcc
Q 000936 209 WAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1219)
Q Consensus 209 ~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp 258 (1219)
|++|+|||++|++|++|-.|.||.+...+. +..-.+|..+|+.++|.|
T Consensus 337 CvcWSPDGKyIvtGGEDDLVtVwSf~erRV--VARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 337 CVCWSPDGKYIVTGGEDDLVTVWSFEERRV--VARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEEcCCccEEEecCCcceEEEEEeccceE--EEeccccccceeeEeecc
Confidence 999999999999999999999999999987 778889999999999983
No 252
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=5.6e-11 Score=127.57 Aligned_cols=263 Identities=13% Similarity=0.198 Sum_probs=190.6
Q ss_pred cCCCEEEEEEeCCCC--EEEEEECCCeEEEEECCCCeEEEEe------cccCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 000936 8 KSNRVKGLSFHSKRP--WILASLHSGVIQLWDYRMGTLIDRF------DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (1219)
Q Consensus 8 h~~~V~~i~fspdg~--~Lasg~~dg~I~iWd~~~g~~i~~l------~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd 79 (1219)
...+|+.++|.-+++ .+...+.+..+..+.+........+ ....++|.+++.. ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 346788888876553 3333335666777776655444332 3456667776653 33788899999999999
Q ss_pred cCCCe----EEEEEccCCCCEEEEEEcCCCCEEE-EEECC--CeEEEEECCCCeEEEEEecC---------CCCeEEEEE
Q 000936 80 YKMHR----CLFTLLGHLDYIRTVQFHHEYPWIV-SASDD--QTIRIWNWQSRTCISVLTGH---------NHYVMCASF 143 (1219)
Q Consensus 80 ~~~~~----~~~~l~~h~~~I~~l~fs~d~~~l~-s~s~D--g~I~iwd~~s~~~i~~~~~h---------~~~V~~l~~ 143 (1219)
.+.+. .+..+..+ ..+..+.-++..+.|+ +|+.. ..+.|||+++.+.+..-+.- .-+++.+.|
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 87432 22333322 4566677777766554 58877 78999999988655543321 124678899
Q ss_pred ecC--CCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEE
Q 000936 144 HPK--EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVS 221 (1219)
Q Consensus 144 sp~--~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~s 221 (1219)
.|. ...|++++.-+.||+||.+..+.. ...+.-...+++++...|+++.+++
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRP--------------------------V~~fd~~E~~is~~~l~p~gn~Iy~ 264 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRP--------------------------VAQFDFLENPISSTGLTPSGNFIYT 264 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcc--------------------------eeEeccccCcceeeeecCCCcEEEE
Confidence 887 689999999999999999875543 2234445788999999999999999
Q ss_pred EeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCC
Q 000936 222 GADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1219)
Q Consensus 222 g~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~ 301 (1219)
|..-|.+..+|.+.++.. ...+.+..+.|+++..+|.+.++++++-|..+||+|+.+.+.+...- -..+.+++.+.++
T Consensus 265 gn~~g~l~~FD~r~~kl~-g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGKLL-GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred ecccchhheecccCceee-ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 999999999999998862 34478899999999999999999999999999999999876654432 2334555555443
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=8.3e-10 Score=132.29 Aligned_cols=150 Identities=20% Similarity=0.308 Sum_probs=130.0
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE-EEccCC
Q 000936 15 LSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF-TLLGHL 93 (1219)
Q Consensus 15 i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~-~l~~h~ 93 (1219)
+-++++.-++++|+.-|.|.+|+.........+.+|++.|..+.|+.||+++++.++|.++++|++++++... +..+|+
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 3456777789999999999999987444334688999999999999999999999999999999999988776 778999
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC-CeEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 000936 94 DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNH-YVMCASFHPKEDLVVSASLDQTVRVWDIGAL 167 (1219)
Q Consensus 94 ~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~-~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~ 167 (1219)
..|..++|+|+ .+++++.|.+.++|++. +..+..+.+|.. .+..+..+++...+++++.|+.+++||+.+.
T Consensus 219 aRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999999998 89999999999999865 455557777764 5889999998899999999999999998653
No 254
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.36 E-value=6.1e-12 Score=139.32 Aligned_cols=137 Identities=17% Similarity=0.390 Sum_probs=115.2
Q ss_pred CCCEEEEEEeCCC-CEEEEEECCCeEEEEECCC--------------Ce--------------EEEEecccCCCEEEEEE
Q 000936 9 SNRVKGLSFHSKR-PWILASLHSGVIQLWDYRM--------------GT--------------LIDRFDEHDGPVRGVHF 59 (1219)
Q Consensus 9 ~~~V~~i~fspdg-~~Lasg~~dg~I~iWd~~~--------------g~--------------~i~~l~~h~~~V~~l~f 59 (1219)
..+|+|+.|-|.+ ..++++-.+|.+.+||..- +. .+..+.--.+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 3789999999844 4555666799999997521 11 11122223457899999
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeE
Q 000936 60 HKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVM 139 (1219)
Q Consensus 60 sp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~ 139 (1219)
+|||++||+.+.||.++|+|+.+.+.+..++.--+...|++|||||++|++|+.|.-|.||.+..++.+..-.+|.++|.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 99999999999999999999999888887777778899999999999999999999999999999999999999999999
Q ss_pred EEEEec
Q 000936 140 CASFHP 145 (1219)
Q Consensus 140 ~l~~sp 145 (1219)
.++|.|
T Consensus 379 ~VaFDp 384 (636)
T KOG2394|consen 379 VVAFDP 384 (636)
T ss_pred eEeecc
Confidence 999983
No 255
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=6.1e-11 Score=124.32 Aligned_cols=150 Identities=15% Similarity=0.340 Sum_probs=115.0
Q ss_pred EEEEEeCCCCEEEEEEC----------CCeEEEEECC-CCeEEEEec-ccCCCEEEEEEecCCCEEEEE--ECCCeEEEE
Q 000936 13 KGLSFHSKRPWILASLH----------SGVIQLWDYR-MGTLIDRFD-EHDGPVRGVHFHKSQPLFVSG--GDDYKIKVW 78 (1219)
Q Consensus 13 ~~i~fspdg~~Lasg~~----------dg~I~iWd~~-~g~~i~~l~-~h~~~V~~l~fsp~~~~Lasg--s~Dg~I~vW 78 (1219)
..+.|+|+|.+|++-.. -|...+|.++ .+..+..+. ...++|.+++|+|+|..|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46889999999886544 1345555552 233444443 345689999999999987655 356799999
Q ss_pred EcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEEC
Q 000936 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD---QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL 155 (1219)
Q Consensus 79 d~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~D---g~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~ 155 (1219)
|++ ++.+.++. ...+..+.|+|+|+++++++.+ |.|.+||.++.+.+.... | ..++.++|+|+|+++++++.
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 67777764 5677899999999999998754 679999999888887765 3 34789999999999999874
Q ss_pred ------CCeEEEEECCCC
Q 000936 156 ------DQTVRVWDIGAL 167 (1219)
Q Consensus 156 ------dg~I~vwd~~~~ 167 (1219)
|..+++|+..+.
T Consensus 164 ~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ccceeccccEEEEEecCe
Confidence 688999998653
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=99.35 E-value=1.2e-10 Score=135.82 Aligned_cols=347 Identities=14% Similarity=0.177 Sum_probs=191.1
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeE
Q 000936 291 DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRT 370 (1219)
Q Consensus 291 ~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~ 370 (1219)
..+..+.++|+|++++++.++. ..+|.....+... .+.-..
T Consensus 33 ~~p~~ls~npngr~v~V~g~ge---------------------------Y~iyt~~~~r~k~------------~G~g~~ 73 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGE---------------------------YEIYTALAWRNKA------------FGSGLS 73 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTE---------------------------EEEEETTTTEEEE------------EEE-SE
T ss_pred cCCeeEEECCCCCEEEEEcCCE---------------------------EEEEEccCCcccc------------cCceeE
Confidence 3467889999999988866444 3344422111111 114456
Q ss_pred EEEccCCCEEEEEEeCCCCEEEEEE-ecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC-CceeEe
Q 000936 371 LSYSPTENAVLICSDVDGGSYELYV-IPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKK 448 (1219)
Q Consensus 371 l~~spdg~~llv~~~~~dg~i~l~~-~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~ 448 (1219)
..|.+.+++ ++... ++.+.++. +.......+ ..+. .+.. .|. |.+|...+ ++.|.+||++ ++.+++
T Consensus 74 ~vw~~~n~y-Av~~~--~~~I~I~kn~~~~~~k~i--~~~~---~~~~-If~--G~LL~~~~-~~~i~~yDw~~~~~i~~ 141 (443)
T PF04053_consen 74 FVWSSRNRY-AVLES--SSTIKIYKNFKNEVVKSI--KLPF---SVEK-IFG--GNLLGVKS-SDFICFYDWETGKLIRR 141 (443)
T ss_dssp EEE-TSSEE-EEE-T--TS-EEEEETTEE-TT-------SS----EEE-EE---SSSEEEEE-TTEEEEE-TTT--EEEE
T ss_pred EEEecCccE-EEEEC--CCeEEEEEcCccccceEE--cCCc---ccce-EEc--CcEEEEEC-CCCEEEEEhhHcceeeE
Confidence 888886663 44332 56888863 322221111 1111 1222 222 88888877 5689999999 778888
Q ss_pred eeCCcceEEEEEeCCCcEEEE-eCCeEEEEEcCCC--------------eEEEEEecCCeeEEEEcCCCCEEEEEeCCe-
Q 000936 449 SILPIAADAIFYAGTGNLLCR-AEDRVVIFDLQQR--------------LVLGDLQTPFVKYVVWSNDMESVALLSKHA- 512 (1219)
Q Consensus 449 i~~~~~v~~l~~s~dg~~L~s-~d~~I~l~dl~~~--------------~~l~~~~~~~v~~v~ws~dg~~la~~s~~~- 512 (1219)
+..+ +|..+.|+++|.+++. ++..+++++.... ..+.++ ...|++.+|..| .+...+...
T Consensus 142 i~v~-~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d--~fiYtT~~~l 217 (443)
T PF04053_consen 142 IDVS-AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVED--CFIYTTSNHL 217 (443)
T ss_dssp ESS--E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TTEE
T ss_pred EecC-CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEcC--EEEEEcCCeE
Confidence 8876 4899999999999955 6888998876555 333333 357999999887 444444434
Q ss_pred EEEEecCccceeeeeeeeEEeeeEEecCCeEEEEcCCeeeEEecCCceeEEEeccccEEEEE--E------------e--
Q 000936 513 IIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITK--V------------S-- 576 (1219)
Q Consensus 513 i~i~~~~l~~~~~~~e~~~iks~~wd~~~~~iy~t~~~iky~l~~g~~~~i~~~~~~~~l~~--~------------~-- 576 (1219)
-|+.+.+...+.++.....+-.. .... ..-|++-+...-....++...+..+ + .
T Consensus 218 kYl~~Ge~~~i~~ld~~~yllgy-~~~~---------~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~ 287 (443)
T PF04053_consen 218 KYLVNGETGIIAHLDKPLYLLGY-LPKE---------NRLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAAS 287 (443)
T ss_dssp EEEETTEEEEEEE-SS--EEEEE-ETTT---------TEEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHH
T ss_pred EEEEcCCcceEEEcCCceEEEEE-EccC---------CEEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhh
Confidence 34555665666665543322111 1111 1112221111111111111110000 0 0
Q ss_pred -----------CCEEEEEecCCceE-EEE-eCchhHhHHHHHhccCHHHHHHhhhcCcccchhHHHHHHhCCChhhhhcc
Q 000936 577 -----------GNTIFCLDRDGKNR-AIV-IDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHF 643 (1219)
Q Consensus 577 -----------~~~l~~l~~~~~~~-~~~-ld~~e~~f~~~l~~~~~~~a~~~i~~~~~~~~~i~~~l~~~g~~e~Al~~ 643 (1219)
...+-++.+.|... .+. ....+.+|.+|+..|+++.|+++++..+. ...|.-|.
T Consensus 288 ~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~--~~~W~~Lg----------- 354 (443)
T PF04053_consen 288 NLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDD--PEKWKQLG----------- 354 (443)
T ss_dssp HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCST--HHHHHHHH-----------
T ss_pred hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCc--HHHHHHHH-----------
Confidence 00011122222221 111 14568899999999999999999988553 56777666
Q ss_pred ccCcchhhhHHhhcCCHHHHHHHHHHh-------------CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhhHHHH
Q 000936 644 VKDERTRFNLALESGNIQIAVASAKEI-------------DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYL 710 (1219)
Q Consensus 644 ~~d~~~rf~lal~~g~~~~A~~~a~~l-------------~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~ 710 (1219)
+.|+..||++.|.++.++. .+.+..++||..|...|++.+|-.|+.-+||++....++.
T Consensus 355 --------~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 355 --------DEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp --------HHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHH
T ss_pred --------HHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHH
Confidence 6688888888888888764 4477889999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHH
Q 000936 711 ITGNMDKLSKMLK 723 (1219)
Q Consensus 711 ~~g~~~~l~kl~~ 723 (1219)
.+|....+.-+++
T Consensus 427 ~~~~~~~A~~~A~ 439 (443)
T PF04053_consen 427 ETGRLPEAALFAR 439 (443)
T ss_dssp HTT-HHHHHHHHH
T ss_pred HcCCchHHHHHHH
Confidence 9999888776655
No 257
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.6e-09 Score=127.21 Aligned_cols=445 Identities=13% Similarity=0.133 Sum_probs=241.0
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCC-EEEEEEeCCCCEEEE-EeCCCeeEEEecCCcceEEecCCEE
Q 000936 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR-FWILASHPEMNLLAA-GHDSGMIVFKLERERPAFAVSGDSL 332 (1219)
Q Consensus 255 ~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~-i~~l~~sp~~~~la~-g~d~gi~v~~l~~~~~~~s~~~~~l 332 (1219)
+|++.+..++.|+.+|.|.+.+ ++.+.++.++.+... +..+-...+.++|++ |.+.+.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~------------------- 89 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQG------------------- 89 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCC-------------------
Confidence 5778899999999999988887 334444667766666 333333333345443 433220
Q ss_pred EEEeCCeEEEEEecCC---c-c--e---eeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCC
Q 000936 333 FYAKDRFLRYYEFSTQ---K-D--T---QVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGR 403 (1219)
Q Consensus 333 ~~~~d~~i~v~d~~~~---~-~--~---~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~ 403 (1219)
....+++|+++.. . + . .+.+.+.+.. ..++++++.+.+-+.+++ |-.+|.|..+.=+-.....
T Consensus 90 ---np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~---~~p~s~l~Vs~~l~~Iv~--Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 90 ---NPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTN---PSPASSLAVSEDLKTIVC--GFTNGLVICYKGDILRDRG 161 (933)
T ss_pred ---CceEEEEecccccCCCCCcceeeeeeeeccCCCCC---CCcceEEEEEccccEEEE--EecCcEEEEEcCcchhccc
Confidence 0014667776652 1 1 1 1122222211 227888999998665544 4457888877632111111
Q ss_pred Cc-cccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCCce--eEeeeCCc-ceEEEEEeCC-CcEEEEeCCeEEEEE
Q 000936 404 GD-SVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEV--VKKSILPI-AADAIFYAGT-GNLLCRAEDRVVIFD 478 (1219)
Q Consensus 404 ~~-~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~--~~~i~~~~-~v~~l~~s~d-g~~L~s~d~~I~l~d 478 (1219)
.. .......++|+.+++..+++.++.......|.+|.+.++. .+.+..++ +..+-.+++. +.++++++..+.+||
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~ 241 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYD 241 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEc
Confidence 11 1122334579999999998763333335789999999665 45566666 7788888876 447788899999999
Q ss_pred cCCCeEEEEEecCCeeEEEEcCCCCEEEEEeCCeEEEEecCccceeeeeeeeEEeeeEEe-cCCeEEEEcCCeeeEEecC
Q 000936 479 LQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWD-DNGVFIYTTLNHIKYCLPN 557 (1219)
Q Consensus 479 l~~~~~l~~~~~~~v~~v~ws~dg~~la~~s~~~i~i~~~~l~~~~~~~e~~~iks~~wd-~~~~~iy~t~~~iky~l~~ 557 (1219)
......-..+..+.-+.+.|..-|..+++..+.+.-.-. -+.....++-.+ .| .+..+.|+..
T Consensus 242 sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~~~~~~~~s------~s~ss~~~i~~~-~d~~n~~v~ys~v--------- 305 (933)
T KOG2114|consen 242 SDGRGPCFAFEVGEKKEMLVFSFGLLLCVTTDKGTENTS------LSNSSSNRIFKA-YDLRNRYVLYSSV--------- 305 (933)
T ss_pred CCCcceeeeecCCCeEEEEEEecCEEEEEEccCCCCCcc------cCccchhheeeh-hhhcCcccchHHh---------
Confidence 987666556664555666666556655555443311100 000000010000 00 1111111110
Q ss_pred CceeEEEeccccEEEEEEeCCEEEEEecCCceEEEEeCchhHhHHHHHhccCHHHHHHhhhcCcccchhHHH-------H
Q 000936 558 GDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIA-------Y 630 (1219)
Q Consensus 558 g~~~~i~~~~~~~~l~~~~~~~l~~l~~~~~~~~~~ld~~e~~f~~~l~~~~~~~a~~~i~~~~~~~~~i~~-------~ 630 (1219)
++....++-.-+...+++.+++.+..+.=-+.+....+.....-|+.|.+++++....+..+.. |
T Consensus 306 --------l~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~ 377 (933)
T KOG2114|consen 306 --------LEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDY 377 (933)
T ss_pred --------HHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 0000000001123456667777666544334444444455556688888888887765544433 4
Q ss_pred HHhCCChhhhhccccCcchhhhHHhhc-CCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhhHHH
Q 000936 631 LQQKGFPEVALHFVKDERTRFNLALES-GNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLY 709 (1219)
Q Consensus 631 l~~~g~~e~Al~~~~d~~~rf~lal~~-g~~~~A~~~a~~l~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~ 709 (1219)
|.++|..+.|..-+ +++ |-+|-+.- +++--+++..++|+.+....- +.-+.....---|..+|
T Consensus 378 Ly~Kgdf~~A~~qY----------I~tI~~le~s~V-i~kfLdaq~IknLt~YLe~L~-----~~gla~~dhttlLLncY 441 (933)
T KOG2114|consen 378 LYGKGDFDEATDQY----------IETIGFLEPSEV-IKKFLDAQRIKNLTSYLEALH-----KKGLANSDHTTLLLNCY 441 (933)
T ss_pred HHhcCCHHHHHHHH----------HHHcccCChHHH-HHHhcCHHHHHHHHHHHHHHH-----HcccccchhHHHHHHHH
Confidence 44444444433211 111 22222211 222233555555555432210 00111112223455566
Q ss_pred HhcCCHHHHHHHHHHHHHcCChhHHHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHH
Q 000936 710 LITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLA 777 (1219)
Q Consensus 710 ~~~g~~~~l~kl~~~~~~~~~~~~~~~~al~lgd~~eai~i~~~~g~~~~A~~la~~~g~~~~a~~l~ 777 (1219)
..+++.+++.+..+... .|. ..-|++.|.+++++++.+++|+.+|+.++..+.+..++
T Consensus 442 iKlkd~~kL~efI~~~~-~g~---------~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~il 499 (933)
T KOG2114|consen 442 IKLKDVEKLTEFISKCD-KGE---------WFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDIL 499 (933)
T ss_pred HHhcchHHHHHHHhcCC-Ccc---------eeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHH
Confidence 66777777777765333 221 24589999999999999999999999999966666655
No 258
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=5.4e-11 Score=127.68 Aligned_cols=221 Identities=14% Similarity=0.291 Sum_probs=168.0
Q ss_pred ccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCe----EEEEecccCCCEEEEEEecCCCEE-EEEECC--CeEEEEE
Q 000936 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT----LIDRFDEHDGPVRGVHFHKSQPLF-VSGGDD--YKIKVWN 79 (1219)
Q Consensus 7 ~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~----~i~~l~~h~~~V~~l~fsp~~~~L-asgs~D--g~I~vWd 79 (1219)
+.+..|.+++.. ..+|+++..+|.+++|..+.+. .+..+..+ .++..+.-++..+.+ ++||.. ..+++||
T Consensus 103 l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 103 LGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred cccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 344556666654 3478888899999999987543 22333333 456677777766655 558887 8899999
Q ss_pred cCCCeEEEEEccCC---------CCEEEEEEcCC--CCEEEEEECCCeEEEEECCC-CeEEEEEecCCCCeEEEEEecCC
Q 000936 80 YKMHRCLFTLLGHL---------DYIRTVQFHHE--YPWIVSASDDQTIRIWNWQS-RTCISVLTGHNHYVMCASFHPKE 147 (1219)
Q Consensus 80 ~~~~~~~~~l~~h~---------~~I~~l~fs~d--~~~l~s~s~Dg~I~iwd~~s-~~~i~~~~~h~~~V~~l~~sp~~ 147 (1219)
+++.+.+++-+.-. -.++++.|-+. ...|++++.-+.+++||.+. ++++..+.-...+++++...|++
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 99887776654221 25678889888 77999999999999999985 45788888888999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCe
Q 000936 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 227 (1219)
Q Consensus 148 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~ 227 (1219)
+.+++|..-|.+..||+++++.. ...+.+..+.|.++..+|+++++++++-|+.
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~kl~--------------------------g~~~kg~tGsirsih~hp~~~~las~GLDRy 313 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGKLL--------------------------GCGLKGITGSIRSIHCHPTHPVLASCGLDRY 313 (412)
T ss_pred cEEEEecccchhheecccCceee--------------------------ccccCCccCCcceEEEcCCCceEEeecccee
Confidence 99999999999999999986542 2246778899999999999999999999999
Q ss_pred EEEEECCCCCeeeEEeecCCCCCeEEEEEccC
Q 000936 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1219)
Q Consensus 228 I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~ 259 (1219)
|+|+|+.+.+. +.... -...++++.+.++
T Consensus 314 vRIhD~ktrkl--l~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 314 VRIHDIKTRKL--LHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred EEEeecccchh--hhhhh-hhccccEEEecCC
Confidence 99999999765 22221 1234566666543
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.33 E-value=4.2e-11 Score=126.16 Aligned_cols=251 Identities=17% Similarity=0.301 Sum_probs=187.6
Q ss_pred CcceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECC-CCeEEEEe-cccCCCEEEEEEecCCCEEEEEECCCeEEEE
Q 000936 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYR-MGTLIDRF-DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (1219)
Q Consensus 1 ml~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~-~g~~i~~l-~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vW 78 (1219)
++++++||.+.|+....-|..+-+++.+.|.+++||--+ .++.-..+ ..-..+++++.++++...|++|-+.|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 467899999999999999988889999999999999744 33333333 2346789999999999999999999999988
Q ss_pred EcC----CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEE
Q 000936 79 NYK----MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (1219)
Q Consensus 79 d~~----~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s 154 (1219)
.+. ....++....|...+..+-|+-...++++.+.|..+.---.+++..+..+.- ...-+++.+.-. +...|.
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd 172 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGD 172 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecc
Confidence 653 3445566678999999999999999999999987664333334433322110 000111111111 444455
Q ss_pred CCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000936 155 LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 234 (1219)
Q Consensus 155 ~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~ 234 (1219)
..|.|..-.+... ...+...+.+|...+.+++|.|....+.+|..|..+.+||+.
T Consensus 173 ~~gqvt~lr~~~~-------------------------~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 173 HSGQITMLKLEQN-------------------------GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred cccceEEEEEeec-------------------------CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 5555555443221 122456788999999999999999999999999999999998
Q ss_pred CCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000936 235 ETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1219)
Q Consensus 235 ~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~ 280 (1219)
..+. ....+.+|.+.|..+...+.-+.++++++||.|.+|+++..
T Consensus 228 g~~g-~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 228 GRKG-TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred CCcc-eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 7665 26778899999999998888889999999999999998754
No 260
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.33 E-value=8.7e-09 Score=119.27 Aligned_cols=266 Identities=13% Similarity=0.162 Sum_probs=170.7
Q ss_pred cCCCeEEEEEcCCCCEEEEEeC----CCeEEEEECCCC--CeeeEEeecCCCCCeEEEEEccCCCEEEEEe-CCCcEEEE
Q 000936 203 HDRGVNWAAFHPTLPLIVSGAD----DRQVKLWRMNET--KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIRVW 275 (1219)
Q Consensus 203 ~~~~V~~l~~sp~g~~l~sg~~----dg~I~iwd~~~~--~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s-~dg~I~iw 275 (1219)
......+++++|++++|.+... ++.|..|++... ....+............++++|++++|+++. .+|+|.++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 4566788999999999998877 578999998764 4433444443455677899999999988886 58999999
Q ss_pred eCCC-CeeEEE---Ee----------cCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEE
Q 000936 276 DVTK-RTGVQT---FR----------REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLR 341 (1219)
Q Consensus 276 dl~~-~~~~~~---~~----------~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~ 341 (1219)
++.. +..... +. .......++.++|+++++.+..-+ ...|.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-------------------------~D~v~ 169 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-------------------------ADRVY 169 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-------------------------TTEEE
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-------------------------CCEEE
Confidence 9987 333222 21 122447788999999888776432 34566
Q ss_pred EEEecCCc--ceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCC-CCCc---ccc-cccc--
Q 000936 342 YYEFSTQK--DTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI-GRGD---SVQ-DAKK-- 412 (1219)
Q Consensus 342 v~d~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~-~~~~---~~~-~~~~-- 412 (1219)
+|++.... ......+.... ...++.+.|+|+++++.+... .++.|.+|++..... .... ... ....
T Consensus 170 ~~~~~~~~~~l~~~~~~~~~~----G~GPRh~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSIKVPP----GSGPRHLAFSPDGKYAYVVNE-LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp EEEE-TTS-TEEEEEEEECST----TSSEEEEEE-TTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred EEEEeCCCceEEEeecccccc----CCCCcEEEEcCCcCEEEEecC-CCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence 77776543 22222222111 227899999999998877765 667999999883211 0000 011 0111
Q ss_pred CceeEEEEEeCCeEEEEEc-CCCEEEEEecC--Ccee---EeeeCCc-ceEEEEEeCCCcEEEEe---CCeEEEEEc--C
Q 000936 413 GLGGSAIFIARNRFAVLDK-SSNQVLVKNLK--NEVV---KKSILPI-AADAIFYAGTGNLLCRA---EDRVVIFDL--Q 480 (1219)
Q Consensus 413 ~~i~~~~fs~d~~~l~~~~-~dg~I~Iwdl~--~~~~---~~i~~~~-~v~~l~~s~dg~~L~s~---d~~I~l~dl--~ 480 (1219)
.....++++|||++|.++. ..+.|.+|+++ +..+ ..+.... ....+.++|+|++|+.+ ++.|.+|++ .
T Consensus 245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 2467799999998866654 57889999994 2223 3333323 58999999999999764 588999976 5
Q ss_pred CCeEEEEE---ecCCeeEEEE
Q 000936 481 QRLVLGDL---QTPFVKYVVW 498 (1219)
Q Consensus 481 ~~~~l~~~---~~~~v~~v~w 498 (1219)
+|.+.... ......+|.|
T Consensus 325 tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 325 TGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTEEEEEEEEEESSSEEEEEE
T ss_pred CCcEEEecccccCCCCEEEeC
Confidence 67654443 2355555554
No 261
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.31 E-value=3.8e-08 Score=113.91 Aligned_cols=264 Identities=14% Similarity=0.128 Sum_probs=173.9
Q ss_pred EEEEECC----CeEEEEEC--CCCeEE--EEecccCCCEEEEEEecCCCEEEEEEC----CCeEEEEEcCCC--e--EEE
Q 000936 24 ILASLHS----GVIQLWDY--RMGTLI--DRFDEHDGPVRGVHFHKSQPLFVSGGD----DYKIKVWNYKMH--R--CLF 87 (1219)
Q Consensus 24 Lasg~~d----g~I~iWd~--~~g~~i--~~l~~h~~~V~~l~fsp~~~~Lasgs~----Dg~I~vWd~~~~--~--~~~ 87 (1219)
+++|+.. +.|.+|++ .++++. ..+ .-......++++|++++|.+... ++.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4556555 78999988 555543 222 23344577899999999998876 579999988753 3 333
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEEC-CCeEEEEECCC-CeEEEE---Ee----------cCCCCeEEEEEecCCCEEEE
Q 000936 88 TLLGHLDYIRTVQFHHEYPWIVSASD-DQTIRIWNWQS-RTCISV---LT----------GHNHYVMCASFHPKEDLVVS 152 (1219)
Q Consensus 88 ~l~~h~~~I~~l~fs~d~~~l~s~s~-Dg~I~iwd~~s-~~~i~~---~~----------~h~~~V~~l~~sp~~~~l~s 152 (1219)
+..........++++|++++|+++.. +|+|.++++.. +..... +. .......++.|+|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 44434456678999999999998875 89999999986 443332 21 12245788999999998887
Q ss_pred EEC-CCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEe-CCCeEEE
Q 000936 153 ASL-DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKL 230 (1219)
Q Consensus 153 ~s~-dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~-~dg~I~i 230 (1219)
... ...|.+|++........ . ..........+...++|+|+++++.+.. .++.|.+
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~---------------------~-~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLT---------------------P-VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV 218 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEE---------------------E-EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EecCCCEEEEEEEeCCCceEE---------------------E-eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence 654 35799999876431100 0 0111223456788999999999876655 5788999
Q ss_pred EECC--CCCeeeEEeecC----C--CCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCC--C--eeEEEEecCCCCEEEEE
Q 000936 231 WRMN--ETKAWEVDTLRG----H--MNNVSCVMFHAKQDIIVSNS-EDKSIRVWDVTK--R--TGVQTFRREHDRFWILA 297 (1219)
Q Consensus 231 wd~~--~~~~~~~~~~~~----h--~~~I~~l~~sp~g~~L~s~s-~dg~I~iwdl~~--~--~~~~~~~~~~~~i~~l~ 297 (1219)
+++. ++....+..... . ......+.++|||++|+++. ..++|.+|++.. + +.+..+.......+.++
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~ 298 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFA 298 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEE
T ss_pred EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEE
Confidence 9988 333322222221 1 22578899999999887765 566899999832 3 33445555556689999
Q ss_pred EeCCCCEEEEEeC
Q 000936 298 SHPEMNLLAAGHD 310 (1219)
Q Consensus 298 ~sp~~~~la~g~d 310 (1219)
++|+|++|+++..
T Consensus 299 ~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 299 FSPDGRYLYVANQ 311 (345)
T ss_dssp E-TTSSEEEEEET
T ss_pred EeCCCCEEEEEec
Confidence 9999999988764
No 262
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=5.5e-10 Score=124.92 Aligned_cols=282 Identities=14% Similarity=0.168 Sum_probs=193.2
Q ss_pred ccCCCEEEEEEecCCCEE-EEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 000936 49 EHDGPVRGVHFHKSQPLF-VSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC 127 (1219)
Q Consensus 49 ~h~~~V~~l~fsp~~~~L-asgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~ 127 (1219)
+|...-+.|..+|||+|+ +||...-.|++||+.+-..-+.-.-....|.-.-.+.|...++.-..|.+|-+..- .|..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCee
Confidence 467778999999999975 56667889999999876555444334456777777777777777777888876542 2222
Q ss_pred EEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCe
Q 000936 128 ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207 (1219)
Q Consensus 128 i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 207 (1219)
... . -...-..++++.-..-|++++....|.-+++..++... .+....+.+
T Consensus 128 y~~-R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~---------------------------P~~~~~~~l 178 (703)
T KOG2321|consen 128 YRT-R-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLN---------------------------PFETDSGEL 178 (703)
T ss_pred eee-e-cCcCCccccccCCCccEEEeecCcceEEEEcccccccc---------------------------ccccccccc
Confidence 111 1 11222345555434334455556678888888766433 344456889
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEee------cCCCC-----CeEEEEEccCCCEEEEEeCCCcEEEEe
Q 000936 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL------RGHMN-----NVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (1219)
Q Consensus 208 ~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~------~~h~~-----~I~~l~~sp~g~~L~s~s~dg~I~iwd 276 (1219)
+++..++-..+|++|+.+|.|-+||.++... +.++ ..|.+ .|+++.|+.+|-.+++|+.+|.+.|||
T Consensus 179 N~v~in~~hgLla~Gt~~g~VEfwDpR~ksr--v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD 256 (703)
T KOG2321|consen 179 NVVSINEEHGLLACGTEDGVVEFWDPRDKSR--VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD 256 (703)
T ss_pred eeeeecCccceEEecccCceEEEecchhhhh--heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence 9999999999999999999999999988765 3332 22333 399999999999999999999999999
Q ss_pred CCCCeeEEEEec-CCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEe
Q 000936 277 VTKRTGVQTFRR-EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (1219)
Q Consensus 277 l~~~~~~~~~~~-~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~ 355 (1219)
+++.+++..-.. ..-+|..+.|.+.+. ++.+++.....+++||-.+|+......
T Consensus 257 LRa~~pl~~kdh~~e~pi~~l~~~~~~~-------------------------q~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 257 LRASKPLLVKDHGYELPIKKLDWQDTDQ-------------------------QNKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred cccCCceeecccCCccceeeecccccCC-------------------------CceEEecchHHhhhcccccCCceeecc
Confidence 999888755432 223566677765421 122333356778899999988754433
Q ss_pred ecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEec
Q 000936 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1219)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~ 397 (1219)
.. . .+..+++-|++.+++++. +++.+..|-++
T Consensus 312 pt-----~---~lND~C~~p~sGm~f~An--e~~~m~~yyiP 343 (703)
T KOG2321|consen 312 PT-----S---DLNDFCFVPGSGMFFTAN--ESSKMHTYYIP 343 (703)
T ss_pred cc-----C---CcCceeeecCCceEEEec--CCCcceeEEcc
Confidence 22 2 778899999988776643 45556666555
No 263
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=7.7e-10 Score=132.54 Aligned_cols=221 Identities=11% Similarity=0.042 Sum_probs=149.6
Q ss_pred CeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECC---CeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCE
Q 000936 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (1219)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D---g~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~ 107 (1219)
..|.++|.. +.....+..+...+.+.+|+|+|++|+.++.+ ..|.+||+.+++... +..+...+.++.|+||++.
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 368888875 44445565677789999999999999887643 489999998876543 3345566778999999997
Q ss_pred EEE-EECCC--eEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECC-C--eEEEEECCCCccccccCCccceee
Q 000936 108 IVS-ASDDQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD-Q--TVRVWDIGALRKKTVSPADDILRL 181 (1219)
Q Consensus 108 l~s-~s~Dg--~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d-g--~I~vwd~~~~~~~~~~~~~~~~~~ 181 (1219)
|+. .+.++ .|++||+.+++.. .+..+........|+|+|+.|+..+.. + .|.++|+.+.+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----------- 315 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----------- 315 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------
Confidence 764 44443 5889998877543 344455555678999999988776543 3 5777776653321
Q ss_pred ccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCeeeEEeecCCCCCeEEEEEcc
Q 000936 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR---QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1219)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp 258 (1219)
.+..+...+....|+|+|++++.++.++ .|.+||+.++.. ..+... .......|+|
T Consensus 316 -----------------~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---~~l~~~-~~~~~p~~sp 374 (417)
T TIGR02800 316 -----------------RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---RVLTDT-GLDESPSFAP 374 (417)
T ss_pred -----------------EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---EEccCC-CCCCCceECC
Confidence 1222344566789999999999888776 788999887553 223222 2234568999
Q ss_pred CCCEEEEEeCCC---cEEEEeCCCCeeEEEEe
Q 000936 259 KQDIIVSNSEDK---SIRVWDVTKRTGVQTFR 287 (1219)
Q Consensus 259 ~g~~L~s~s~dg---~I~iwdl~~~~~~~~~~ 287 (1219)
+|+.|+..+.++ .+.+.+.. +.....+.
T Consensus 375 dg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 375 NGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred CCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 999888877654 34555533 33334343
No 264
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.1e-09 Score=131.37 Aligned_cols=234 Identities=9% Similarity=-0.005 Sum_probs=153.5
Q ss_pred eEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECC---CeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEE
Q 000936 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWI 108 (1219)
Q Consensus 32 ~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D---g~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l 108 (1219)
.|.++|...+. ...+..+...+....|||||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 48888876444 45555677889999999999998876643 479999998876533 33334455678999999987
Q ss_pred EE-EECCC--eEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEEC-CC--eEEEEECCCCccccccCCccceeec
Q 000936 109 VS-ASDDQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQ--TVRVWDIGALRKKTVSPADDILRLS 182 (1219)
Q Consensus 109 ~s-~s~Dg--~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg--~I~vwd~~~~~~~~~~~~~~~~~~~ 182 (1219)
+. .+.+| .|.+||+.+++.. .+..+........|+|+|+.++..+. +| .|.++|+.+++...
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~----------- 325 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER----------- 325 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-----------
Confidence 74 44454 6888899887654 45555556677899999998776654 33 46667776543211
Q ss_pred cccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCCeeeEEeecCCCCCeEEEEEccC
Q 000936 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD-R--QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1219)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~d-g--~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~ 259 (1219)
.... ........|+|+|+.++..+.+ + .|.+||+.++.. ..+.. ........|+|+
T Consensus 326 ---------------lt~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~---~~lt~-~~~~~~p~~spd 384 (430)
T PRK00178 326 ---------------VTFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV---RILTD-TSLDESPSVAPN 384 (430)
T ss_pred ---------------eecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE---EEccC-CCCCCCceECCC
Confidence 0111 1122346899999998877643 3 588899888764 22221 112235689999
Q ss_pred CCEEEEEeCC---CcEEEEeCCCCeeEEEEecCCCCEEEEEEeCC
Q 000936 260 QDIIVSNSED---KSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1219)
Q Consensus 260 g~~L~s~s~d---g~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~ 301 (1219)
|+.++..+.+ ..+.++++. +.....+..+.+.+...+|+|-
T Consensus 385 g~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 385 GTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 9998877654 346777764 3333444444455666677763
No 265
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.27 E-value=3.2e-08 Score=108.48 Aligned_cols=408 Identities=11% Similarity=0.138 Sum_probs=238.2
Q ss_pred cCCCEEEEEEecC--CC-EEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEE-------ECCCeEEE
Q 000936 50 HDGPVRGVHFHKS--QP-LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSA-------SDDQTIRI 119 (1219)
Q Consensus 50 h~~~V~~l~fsp~--~~-~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~-------s~Dg~I~i 119 (1219)
|.-.....-..|| |. .+.++++| +..+++.+|+..+ +..|.+.|..-.|+|+|++++.. ...+.+.+
T Consensus 35 h~~cM~n~~l~PDI~GD~IiFt~~Dd--lWe~slk~g~~~r-itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~ 111 (668)
T COG4946 35 HEFCMKNYYLNPDIYGDRIIFTCCDD--LWEYSLKDGKPLR-ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYV 111 (668)
T ss_pred hhhhhhhhhcCCcccCcEEEEEechH--HHHhhhccCCeeE-EecccceeccccCCCCCcEEEEEEEEecCCCccccEEE
Confidence 4443444445664 33 45555554 4445666776654 55688999999999999988762 23456888
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEE----EEECCCCccccccCCccceeeccccccccccccce
Q 000936 120 WNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR----VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1219)
Q Consensus 120 wd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~----vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1219)
.+.++|+..+..--....-.-+-|.|+|+.+++...-.-.. +|.+......
T Consensus 112 v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~------------------------- 166 (668)
T COG4946 112 VPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIK------------------------- 166 (668)
T ss_pred EeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCce-------------------------
Confidence 88888876543221233334466999998888765332221 1221110000
Q ss_pred EEEEEeecCCCeEEEEEcCCCCEEEEE--------------eCCCeEEEEECCCCC-eeeEEeecCCCCCeEEEEEccCC
Q 000936 196 VKYVLEGHDRGVNWAAFHPTLPLIVSG--------------ADDRQVKLWRMNETK-AWEVDTLRGHMNNVSCVMFHAKQ 260 (1219)
Q Consensus 196 ~~~~~~~~~~~V~~l~~sp~g~~l~sg--------------~~dg~I~iwd~~~~~-~~~~~~~~~h~~~I~~l~~sp~g 260 (1219)
...-.-++.+.+.+- +| .++.| +..| ++|--..+. . ...+....+.|++-..-. +
T Consensus 167 ---~e~LnlGpathiv~~-dg-~ivigRntydLP~WK~YkGGtrG--klWis~d~g~t--FeK~vdl~~~vS~PmIV~-~ 236 (668)
T COG4946 167 ---TEPLNLGPATHIVIK-DG-IIVIGRNTYDLPHWKGYKGGTRG--KLWISSDGGKT--FEKFVDLDGNVSSPMIVG-E 236 (668)
T ss_pred ---eeeccCCceeeEEEe-CC-EEEEccCcccCcccccccCCccc--eEEEEecCCcc--eeeeeecCCCcCCceEEc-c
Confidence 000011122222221 22 22222 1222 233222111 1 112222223333322221 2
Q ss_pred CEEEEEeCCCcEEEEeCC-CCeeEEEEecCCC--CEEEEEEeCCCCEEEEEeCCCeeEEEecCCcc--------------
Q 000936 261 DIIVSNSEDKSIRVWDVT-KRTGVQTFRREHD--RFWILASHPEMNLLAAGHDSGMIVFKLERERP-------------- 323 (1219)
Q Consensus 261 ~~L~s~s~dg~I~iwdl~-~~~~~~~~~~~~~--~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~-------------- 323 (1219)
+.......+|.=.+|.+. +|+-+ +.|.+ ..++-..+.||+.++....+.+.+|+.++++.
T Consensus 237 RvYFlsD~eG~GnlYSvdldGkDl---rrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k 313 (668)
T COG4946 237 RVYFLSDHEGVGNLYSVDLDGKDL---RRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKK 313 (668)
T ss_pred eEEEEecccCccceEEeccCCchh---hhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccc
Confidence 333333445443444332 12222 22221 22334456788888888888888886655432
Q ss_pred ------------eE-EecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCE
Q 000936 324 ------------AF-AVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGS 390 (1219)
Q Consensus 324 ------------~~-s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~ 390 (1219)
-+ ..+|++++.++.|+..+.+...+-.++ +.. .+.|+-..+..+++.+++... ++..
T Consensus 314 ~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iq---v~~------~~~VrY~r~~~~~e~~vigt~-dgD~ 383 (668)
T COG4946 314 QPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQ---VGK------KGGVRYRRIQVDPEGDVIGTN-DGDK 383 (668)
T ss_pred cccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEE---cCC------CCceEEEEEccCCcceEEecc-CCce
Confidence 12 236778888888888888776655433 222 225666777777775555443 4448
Q ss_pred EEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCCceeEeeeCCc--ceEEEEEeCCCcEEE
Q 000936 391 YELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPI--AADAIFYAGTGNLLC 468 (1219)
Q Consensus 391 i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~i~~~~--~v~~l~~s~dg~~L~ 468 (1219)
+.+|+..+.... .....-+.|.++..+++|++++.+.....|.+.|+++...+.+.... -|+.+.|+|++++++
T Consensus 384 l~iyd~~~~e~k----r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iA 459 (668)
T COG4946 384 LGIYDKDGGEVK----RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIA 459 (668)
T ss_pred EEEEecCCceEE----EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEE
Confidence 999998764322 34566678999999999999999998888999999977777776555 799999999999998
Q ss_pred Ee------CCeEEEEEcCCCeEEEEEec-CCeeEEEEcCCCCEEEEEeCCe
Q 000936 469 RA------EDRVVIFDLQQRLVLGDLQT-PFVKYVVWSNDMESVALLSKHA 512 (1219)
Q Consensus 469 s~------d~~I~l~dl~~~~~l~~~~~-~~v~~v~ws~dg~~la~~s~~~ 512 (1219)
.+ ...|++||+.+++....-.. ..--+-+|.|||++|...+...
T Consensus 460 YafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 460 YAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred EecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccc
Confidence 75 46899999999887655443 3334568999999998877643
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=9.2e-10 Score=132.12 Aligned_cols=221 Identities=10% Similarity=0.011 Sum_probs=148.3
Q ss_pred eecccCCCEEEEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEE-EECCC--eEEE
Q 000936 4 KFETKSNRVKGLSFHSKRPWILASLHS---GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVS-GGDDY--KIKV 77 (1219)
Q Consensus 4 ~l~~h~~~V~~i~fspdg~~Lasg~~d---g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Las-gs~Dg--~I~v 77 (1219)
.+..+...+...+|||||++|+..+.+ ..|.+||+.+|+... +....+.+....|+|||+.|+. .+.+| .|.+
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 455677788999999999999876543 469999998886543 3334455667899999998874 44444 6888
Q ss_pred EEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC-C--CeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEE
Q 000936 78 WNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-D--QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (1219)
Q Consensus 78 Wd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~-D--g~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s 154 (1219)
||+.+++.. .+..+........|+||++.|+..+. + ..|.++|+.+++...... .........|+|+|+.++..+
T Consensus 272 ~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 272 MDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEEEE
Confidence 899877643 45556666777899999998876664 3 357788888776543322 223344678999999988776
Q ss_pred CC-C--eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCC---CeE
Q 000936 155 LD-Q--TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQV 228 (1219)
Q Consensus 155 ~d-g--~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~d---g~I 228 (1219)
.+ + .|.+||+.+++.... . +........|+|+|+.++..+.+ ..+
T Consensus 350 ~~~~~~~l~~~dl~tg~~~~l----------------------------t-~~~~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSVRIL----------------------------T-DTSLDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred ccCCceEEEEEECCCCCEEEc----------------------------c-CCCCCCCceECCCCCEEEEEEecCCceEE
Confidence 53 2 578888876443211 1 11112245899999988876643 346
Q ss_pred EEEECCCCCeeeEEeecCCCCCeEEEEEccC
Q 000936 229 KLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1219)
Q Consensus 229 ~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~ 259 (1219)
.+++..... ...+..+.+.+...+|+|-
T Consensus 401 ~~~~~~g~~---~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 401 MLVSINGRV---RLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEEECCCCc---eEECcCCCCCcCCCccCCC
Confidence 677775544 3344445566777778763
No 267
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.2e-09 Score=130.44 Aligned_cols=233 Identities=9% Similarity=0.017 Sum_probs=149.6
Q ss_pred eEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECC---CeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEE
Q 000936 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWI 108 (1219)
Q Consensus 32 ~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D---g~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l 108 (1219)
.|.++|.... ....+..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +....+......|+|||+.|
T Consensus 199 ~l~i~d~dG~-~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGY-NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCC-CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 6777786443 334555677889999999999988876542 368899998776432 22223334578999999977
Q ss_pred EE-EECCCe--EEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEEC-CC--eEEEEECCCCccccccCCccceeec
Q 000936 109 VS-ASDDQT--IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQ--TVRVWDIGALRKKTVSPADDILRLS 182 (1219)
Q Consensus 109 ~s-~s~Dg~--I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg--~I~vwd~~~~~~~~~~~~~~~~~~~ 182 (1219)
+. .+.+|. |.+||+.+++.. .+..+........|+|+|+.++..+. ++ .|.++|+.+++...
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~----------- 344 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR----------- 344 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-----------
Confidence 65 455664 788898877653 44445556678899999998876654 34 45666665533211
Q ss_pred cccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCCeeeEEeecCCCCCeEEEEEccC
Q 000936 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD-DR--QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1219)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~-dg--~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~ 259 (1219)
....+ ......+|+|+|+.++..+. ++ .|.++|+.++.. ..+.... ......|+|+
T Consensus 345 ---------------Lt~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~---~~lt~~~-~d~~ps~spd 403 (448)
T PRK04792 345 ---------------LTFEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM---QVLTSTR-LDESPSVAPN 403 (448)
T ss_pred ---------------EecCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe---EEccCCC-CCCCceECCC
Confidence 11111 22334689999998877654 34 455677777663 2222221 2224589999
Q ss_pred CCEEEEEeCC-C--cEEEEeCCCCeeEEEEecCCCCEEEEEEeC
Q 000936 260 QDIIVSNSED-K--SIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (1219)
Q Consensus 260 g~~L~s~s~d-g--~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp 300 (1219)
|+.|+..+.+ | .+.+++. ++.....+..+.+.+...+|+|
T Consensus 404 G~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 404 GTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 9988776543 3 3677776 4555555655556667777776
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=1.8e-08 Score=108.49 Aligned_cols=286 Identities=11% Similarity=0.118 Sum_probs=175.3
Q ss_pred CCeEEEEECCCCCe-eeEEeecCCCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCC--Cee--EEEEecCCCCEEEE
Q 000936 225 DRQVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAKQDIIVSNSED---KSIRVWDVTK--RTG--VQTFRREHDRFWIL 296 (1219)
Q Consensus 225 dg~I~iwd~~~~~~-~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~d---g~I~iwdl~~--~~~--~~~~~~~~~~i~~l 296 (1219)
+..|.+|++.+... ......-.+.++++-++|+|+++.|.++..+ |.|..|.+.. |+. +........+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56799999884322 1233344567788999999999999887654 6677777664 433 22223334445788
Q ss_pred EEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecC-CcceeeEeec-CCCCCCC----CCCCeE
Q 000936 297 ASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFST-QKDTQVIPIR-RPGSTSL----NQSPRT 370 (1219)
Q Consensus 297 ~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~-~~~~~~~~~~-~~~~~~~----~~~i~~ 370 (1219)
+++++++++.++.-. .+.|.++-+.. |........- ..+...+ ...+..
T Consensus 95 svd~~g~~vf~AnY~-------------------------~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 95 SVDEDGRFVFVANYH-------------------------SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred EECCCCCEEEEEEcc-------------------------CceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 999999888877531 23333443332 2211111110 0000000 013667
Q ss_pred EEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccC-ceeEEEEEeCCeEEEEEcC-CCEEEEEecCC--cee
Q 000936 371 LSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKG-LGGSAIFIARNRFAVLDKS-SNQVLVKNLKN--EVV 446 (1219)
Q Consensus 371 l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~-~i~~~~fs~d~~~l~~~~~-dg~I~Iwdl~~--~~~ 446 (1219)
..++|++++++++.-..| .+.+|++......... +.....+ .-+.++|+|+++++.+..+ +++|.+|..++ ...
T Consensus 150 a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~-~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~ 227 (346)
T COG2706 150 ANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPAD-PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF 227 (346)
T ss_pred eeeCCCCCEEEEeecCCc-eEEEEEcccCcccccc-ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE
Confidence 899999999998877555 7889998854432221 1111222 3467999999999776654 79999999984 444
Q ss_pred EeeeCC----------cceEEEEEeCCCcEEEEe---CCeEEEEEcCCC-eEEEEEec-----CCeeEEEEcCCCCEEEE
Q 000936 447 KKSILP----------IAADAIFYAGTGNLLCRA---EDRVVIFDLQQR-LVLGDLQT-----PFVKYVVWSNDMESVAL 507 (1219)
Q Consensus 447 ~~i~~~----------~~v~~l~~s~dg~~L~s~---d~~I~l~dl~~~-~~l~~~~~-----~~v~~v~ws~dg~~la~ 507 (1219)
..++.. .....|..++||++|..+ .+.|.+|.+... ..+..... ...+...++++|++|++
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 444422 278899999999999665 467888877653 22322222 34788999999999988
Q ss_pred EeCC--eEEEEec--CccceeeeeeeeEEeeeEE
Q 000936 508 LSKH--AIIIASK--KLVHQCTLHETIRVKSGAW 537 (1219)
Q Consensus 508 ~s~~--~i~i~~~--~l~~~~~~~e~~~iks~~w 537 (1219)
...+ .+.++.. ....+..+.....+.+.+|
T Consensus 308 a~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvc 341 (346)
T COG2706 308 ANQKSDNITVFERDKETGRLTLLGRYAVVPEPVC 341 (346)
T ss_pred EccCCCcEEEEEEcCCCceEEecccccCCCCcEE
Confidence 8774 4666643 3333444433333333333
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.25 E-value=4e-08 Score=110.68 Aligned_cols=280 Identities=12% Similarity=0.069 Sum_probs=179.7
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEEC----------CCeEEEEEcCCCe
Q 000936 20 KRPWILASLHS-----GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD----------DYKIKVWNYKMHR 84 (1219)
Q Consensus 20 dg~~Lasg~~d-----g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~----------Dg~I~vWd~~~~~ 84 (1219)
+++++.+.... |+|.+.|..+++.+.++..-..+- .+ +|||++.|.++.. +..|.+||..+.+
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 55666665443 899999999999999987544443 35 9999998877654 7899999999999
Q ss_pred EEEEEccCC-------CCEEEEEEcCCCCEEEEEE-C-CCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEEC
Q 000936 85 CLFTLLGHL-------DYIRTVQFHHEYPWIVSAS-D-DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL 155 (1219)
Q Consensus 85 ~~~~l~~h~-------~~I~~l~fs~d~~~l~s~s-~-Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~ 155 (1219)
.+..+.... .....++++|||+++++.. . +..|.+.|+.+++.+..+.... ...-...+++..+ +-+.
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~ 165 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCR 165 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEee
Confidence 998886422 2344789999999998776 3 6899999999999998887422 2222222222222 2234
Q ss_pred CCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 000936 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMN 234 (1219)
Q Consensus 156 dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sg~~dg~I~iwd~~ 234 (1219)
||......+....+.... +..++...+ . .+ ...+ .|.+ +|.++.+..+ |.|.+.|+.
T Consensus 166 Dg~~~~v~~d~~g~~~~~-----------~~~vf~~~~-~---~v--~~rP----~~~~~dg~~~~vs~e-G~V~~id~~ 223 (352)
T TIGR02658 166 DGSLAKVGYGTKGNPKIK-----------PTEVFHPED-E---YL--INHP----AYSNKSGRLVWPTYT-GKIFQIDLS 223 (352)
T ss_pred cCceEEEEecCCCceEEe-----------eeeeecCCc-c---cc--ccCC----ceEcCCCcEEEEecC-CeEEEEecC
Confidence 555554443331111000 000000000 0 00 0112 4455 7777777666 999999965
Q ss_pred CCC-----eeeEEeec-----CCCCCeEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCeeEEEEecCCCCEE
Q 000936 235 ETK-----AWEVDTLR-----GHMNNVSCVMFHAKQDIIVSNS----------EDKSIRVWDVTKRTGVQTFRREHDRFW 294 (1219)
Q Consensus 235 ~~~-----~~~~~~~~-----~h~~~I~~l~~sp~g~~L~s~s----------~dg~I~iwdl~~~~~~~~~~~~~~~i~ 294 (1219)
... .+...... ...+.+.-++++|+++.+++.. ..+.|.++|..+++.+..+.. ..+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~ 302 (352)
T TIGR02658 224 SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEID 302 (352)
T ss_pred CCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCcee
Confidence 433 22222111 1233445599999999888743 224799999999999988875 45789
Q ss_pred EEEEeCCCC-EEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCccee
Q 000936 295 ILASHPEMN-LLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQ 352 (1219)
Q Consensus 295 ~l~~sp~~~-~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~ 352 (1219)
.++++||++ ++.+... .++.|.++|..+++.+.
T Consensus 303 ~iavS~Dgkp~lyvtn~-------------------------~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 303 SINVSQDAKPLLYALST-------------------------GDKTLYIFDAETGKELS 336 (352)
T ss_pred eEEECCCCCeEEEEeCC-------------------------CCCcEEEEECcCCeEEe
Confidence 999999999 6555442 24567788887776543
No 270
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.25 E-value=6.9e-10 Score=132.98 Aligned_cols=201 Identities=13% Similarity=0.094 Sum_probs=140.7
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEE-ECC--CeEE
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHS---GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-GDD--YKIK 76 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~d---g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasg-s~D--g~I~ 76 (1219)
+.+..+...+.+.+|+|||++|+.+... ..|++||+.+++... +..+.+.+.+++|+|+|+.|+.. +.+ ..|.
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 3455566778999999999999987654 479999998886543 33466677789999999977644 433 4688
Q ss_pred EEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEE
Q 000936 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-Q--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153 (1219)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~D-g--~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~ 153 (1219)
+||+.++.. ..+..+........|+|++++|+.++.. + .|.++|+.+++.. .+..+...+....|+|+|++++.+
T Consensus 262 ~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 262 VMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred EEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEE
Confidence 999887654 3444455555678999999988876653 3 5888888776643 444455667788999999999988
Q ss_pred ECCC---eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCC---e
Q 000936 154 SLDQ---TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR---Q 227 (1219)
Q Consensus 154 s~dg---~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg---~ 227 (1219)
+.++ .|.+||+.+..... +.. ........|+|+|+.|+..+.++ .
T Consensus 340 ~~~~~~~~i~~~d~~~~~~~~----------------------------l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~ 390 (417)
T TIGR02800 340 HREGGGFNIAVMDLDGGGERV----------------------------LTD-TGLDESPSFAPNGRMILYATTRGGRGV 390 (417)
T ss_pred EccCCceEEEEEeCCCCCeEE----------------------------ccC-CCCCCCceECCCCCEEEEEEeCCCcEE
Confidence 8776 78888887633211 111 11223458999999888877654 3
Q ss_pred EEEEECCC
Q 000936 228 VKLWRMNE 235 (1219)
Q Consensus 228 I~iwd~~~ 235 (1219)
+.+.+...
T Consensus 391 l~~~~~~g 398 (417)
T TIGR02800 391 LGLVSTDG 398 (417)
T ss_pred EEEEECCC
Confidence 44555443
No 271
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.22 E-value=8.6e-10 Score=115.66 Aligned_cols=151 Identities=11% Similarity=0.151 Sum_probs=107.7
Q ss_pred EEEEEecCCCEEEEEEC----------CCeEEEEEcCC-CeEEEEEcc-CCCCEEEEEEcCCCCEEEEE--ECCCeEEEE
Q 000936 55 RGVHFHKSQPLFVSGGD----------DYKIKVWNYKM-HRCLFTLLG-HLDYIRTVQFHHEYPWIVSA--SDDQTIRIW 120 (1219)
Q Consensus 55 ~~l~fsp~~~~Lasgs~----------Dg~I~vWd~~~-~~~~~~l~~-h~~~I~~l~fs~d~~~l~s~--s~Dg~I~iw 120 (1219)
..+.|+|+|.+|+.-.. -+...+|.++. +..+..+.- ..++|.+++|+|+++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987665433 13345555522 233444432 34579999999999987654 356799999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEEC---CCeEEEEECCCCccccccCCccceeeccccccccccccceEE
Q 000936 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL---DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVK 197 (1219)
Q Consensus 121 d~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~---dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1219)
|++ ++.+..+. ...+..+.|+|+|+++++++. .|.|.+||.++.+..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i--------------------------- 138 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI--------------------------- 138 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe---------------------------
Confidence 996 66666654 567789999999999999875 467999999864332
Q ss_pred EEEeecCCCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCC
Q 000936 198 YVLEGHDRGVNWAAFHPTLPLIVSGAD------DRQVKLWRMNETK 237 (1219)
Q Consensus 198 ~~~~~~~~~V~~l~~sp~g~~l~sg~~------dg~I~iwd~~~~~ 237 (1219)
...+...++.++|+|+|+++++++. |+.++||+.....
T Consensus 139 --~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 139 --STFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred --eccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence 1223345789999999999999874 6788999986543
No 272
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=5.3e-09 Score=124.06 Aligned_cols=239 Identities=12% Similarity=0.032 Sum_probs=150.6
Q ss_pred CeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEE---EEEECC--CeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCC
Q 000936 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLF---VSGGDD--YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEY 105 (1219)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~L---asgs~D--g~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~ 105 (1219)
+.|.+.|...+. ...+..+...+.+-+|||||+.+ .+...+ ..|.+.++.+++... +....+......|||||
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence 468888865443 44455566677888999999752 244333 467778887765433 22234445678999999
Q ss_pred CEEEEEEC-CC----eEEEEECCCC---eEEEEEecCCCCeEEEEEecCCCEEEEEE-CCCeEEEEEC--CCCccccccC
Q 000936 106 PWIVSASD-DQ----TIRIWNWQSR---TCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDI--GALRKKTVSP 174 (1219)
Q Consensus 106 ~~l~s~s~-Dg----~I~iwd~~s~---~~i~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~I~vwd~--~~~~~~~~~~ 174 (1219)
++|+..+. +| .+.+|++.++ +.......+........|+|||+.|+..+ .+|...+|.+ .....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~----- 317 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ----- 317 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc-----
Confidence 98887653 22 3444776642 33333333334456789999999877765 4665555543 21100
Q ss_pred CccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCeeeEEeecCCCCCe
Q 000936 175 ADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQVKLWRMNETKAWEVDTLRGHMNNV 251 (1219)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~h~~~I 251 (1219)
....+..+...+....|+|||+.|+..+.+ ..|.+||+.+++. ..+......+
T Consensus 318 ---------------------~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~~~~~ 373 (428)
T PRK01029 318 ---------------------SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD---YQLTTSPENK 373 (428)
T ss_pred ---------------------ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe---EEccCCCCCc
Confidence 011223334566788999999988876543 4699999988874 3343334456
Q ss_pred EEEEEccCCCEEEEEeC---CCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCC
Q 000936 252 SCVMFHAKQDIIVSNSE---DKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1219)
Q Consensus 252 ~~l~~sp~g~~L~s~s~---dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~ 301 (1219)
....|+|||+.|+..+. ...|.+||+..++..... ...+.+...+|+|-
T Consensus 374 ~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 374 ESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCC
Confidence 78899999998875443 346888898877654433 34445566777774
No 273
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=2.1e-09 Score=128.43 Aligned_cols=217 Identities=10% Similarity=0.027 Sum_probs=140.5
Q ss_pred ccCCCEEEEEEeCCCCEEEEEEC-C--CeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEE-EECCC--eEEEEEc
Q 000936 7 TKSNRVKGLSFHSKRPWILASLH-S--GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVS-GGDDY--KIKVWNY 80 (1219)
Q Consensus 7 ~h~~~V~~i~fspdg~~Lasg~~-d--g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Las-gs~Dg--~I~vWd~ 80 (1219)
.+...+.+..|||||++|+..+. + ..|.+||+.+++... +....+.....+|+|||+.|+. .+.++ .|.+||+
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 34556778999999999987654 2 358899988876432 2222334457899999997765 45555 4888888
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECC-
Q 000936 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD- 156 (1219)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~-Dg--~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d- 156 (1219)
.+++. ..+..+........|+||+++|+..+. ++ .|.++|+.+++.... ..+........|+|+|++++..+.+
T Consensus 294 ~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~~~~~~ 371 (448)
T PRK04792 294 ATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIMVNRTN 371 (448)
T ss_pred CCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEEEEecC
Confidence 87654 445556666778999999998876654 33 577778877765432 2223334557899999988776653
Q ss_pred C--eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCC-C--eEEEE
Q 000936 157 Q--TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD-R--QVKLW 231 (1219)
Q Consensus 157 g--~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~d-g--~I~iw 231 (1219)
+ .|.++|+.+++... +... .......|+|+|+.|+..+.+ | .+.++
T Consensus 372 g~~~I~~~dl~~g~~~~----------------------------lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~ 422 (448)
T PRK04792 372 GKFNIARQDLETGAMQV----------------------------LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAV 422 (448)
T ss_pred CceEEEEEECCCCCeEE----------------------------ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 3 35556766543221 1111 111234799999988766543 3 36677
Q ss_pred ECCCCCeeeEEeecCCCCCeEEEEEcc
Q 000936 232 RMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1219)
Q Consensus 232 d~~~~~~~~~~~~~~h~~~I~~l~~sp 258 (1219)
+.+... ...+..+.+.+...+|+|
T Consensus 423 ~~~G~~---~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 423 SIDGRF---KARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ECCCCc---eEECcCCCCCcCCCccCC
Confidence 765443 444555566677788887
No 274
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=1.2e-09 Score=115.13 Aligned_cols=188 Identities=15% Similarity=0.284 Sum_probs=123.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC-Ce----EEEEEecCC------------CCeEEEEEecCC--CEEEE
Q 000936 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-RT----CISVLTGHN------------HYVMCASFHPKE--DLVVS 152 (1219)
Q Consensus 92 h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s-~~----~i~~~~~h~------------~~V~~l~~sp~~--~~l~s 152 (1219)
..+-|.++.|...|.+|++|..+|.|.++.-.. .+ ....++.|. ..|..+.|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 456789999999999999999999999996432 21 233444443 357789999877 46777
Q ss_pred EECCCeEEEEECCCCcccccc---CC-ccceeeccccccccccccce----E-EEEEeecCCCeEEEEEcCCCCEEEEEe
Q 000936 153 ASLDQTVRVWDIGALRKKTVS---PA-DDILRLSQMNTDLFGGVDAV----V-KYVLEGHDRGVNWAAFHPTLPLIVSGA 223 (1219)
Q Consensus 153 ~s~dg~I~vwd~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~V~~l~~sp~g~~l~sg~ 223 (1219)
.+.|.+|++|.+.....+... +. .......+....+.+..+.. + +.-..+|...|++++++.|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 788999999998764433210 00 00000111111111111111 1 11234688899999999999988876
Q ss_pred CCCeEEEEECCCC-CeeeEEeecCCC-----CCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCC
Q 000936 224 DDRQVKLWRMNET-KAWEVDTLRGHM-----NNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKR 280 (1219)
Q Consensus 224 ~dg~I~iwd~~~~-~~~~~~~~~~h~-----~~I~~l~~sp~-g~~L~s~s~dg~I~iwdl~~~ 280 (1219)
+|-.|.+|++.-. +...+..+..+. .-|++..|||. .++++-+++.|+|++-|++..
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence 4788999998633 222244444432 35889999995 577888889999999999843
No 275
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.20 E-value=7.3e-10 Score=116.99 Aligned_cols=251 Identities=17% Similarity=0.303 Sum_probs=179.9
Q ss_pred eEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEc-CCCeEEEEE-ccCCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 000936 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY-KMHRCLFTL-LGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119 (1219)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~-~~~~~~~~l-~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~i 119 (1219)
.++..+++|...|+....-|..+-+++.+.|.+++||-- +.++.-..+ .....+++++.++++...|+.+-..|++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 345667899999999999898888999999999999953 333322222 224568899999999999999999999988
Q ss_pred EECC----CCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccce
Q 000936 120 WNWQ----SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1219)
Q Consensus 120 wd~~----s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1219)
+.+. ....++....|...|..+.|+-...++++.+.|..+.---.+.+....
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg------------------------ 150 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLG------------------------ 150 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCccc------------------------
Confidence 8653 445566677899999999999888999999988776433333222110
Q ss_pred EEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000936 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVW 275 (1219)
Q Consensus 196 ~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iw 275 (1219)
.+.+..... .+.+.- .+...|...|.|..-.+.......+.++.+|.+.++++.|.|...+|.+|.+|..+.+|
T Consensus 151 -~Y~~~~~~t---~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~w 224 (404)
T KOG1409|consen 151 -GYNFETPAS---ALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMW 224 (404)
T ss_pred -ceEeeccCC---CCceee--EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEE
Confidence 001111100 011111 14455666666766666555555688999999999999999999999999999999999
Q ss_pred eCCCCee-EEEEecCCCCEEEEEEeCCC-CEEEEEeCCCeeEEEecCCc
Q 000936 276 DVTKRTG-VQTFRREHDRFWILASHPEM-NLLAAGHDSGMIVFKLERER 322 (1219)
Q Consensus 276 dl~~~~~-~~~~~~~~~~i~~l~~sp~~-~~la~g~d~gi~v~~l~~~~ 322 (1219)
|+.-++. .....++.+.+..+..-+-- ++++++.++++.+|+.+..+
T Consensus 225 digg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 225 DIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 9976544 34566788888877766544 45666778888899887544
No 276
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=3.5e-09 Score=125.54 Aligned_cols=224 Identities=14% Similarity=0.083 Sum_probs=142.6
Q ss_pred ecccCCCEEEEEEeCCCCEEE---EEECCC--eEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEEC-----CCe
Q 000936 5 FETKSNRVKGLSFHSKRPWIL---ASLHSG--VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD-----DYK 74 (1219)
Q Consensus 5 l~~h~~~V~~i~fspdg~~La---sg~~dg--~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~-----Dg~ 74 (1219)
|..+...+.+-+|||||+.++ ++..+| .|.+.++.+|+... +....+.....+|||||+.|+..++ +..
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 334455667789999998533 444444 57777887775433 3334455567899999998887653 223
Q ss_pred EEEEEcCCC---eEEEEEccCCCCEEEEEEcCCCCEEEEEE-CCCeEEEE--ECCC-CeEEEEEecCCCCeEEEEEecCC
Q 000936 75 IKVWNYKMH---RCLFTLLGHLDYIRTVQFHHEYPWIVSAS-DDQTIRIW--NWQS-RTCISVLTGHNHYVMCASFHPKE 147 (1219)
Q Consensus 75 I~vWd~~~~---~~~~~l~~h~~~I~~l~fs~d~~~l~s~s-~Dg~I~iw--d~~s-~~~i~~~~~h~~~V~~l~~sp~~ 147 (1219)
+..|++.++ +......++........|+|||+.|+..+ .+|...+| ++.. +.....+..+...+....|+|+|
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 444776642 33322323334456789999999888766 45655555 4432 33345555555677889999999
Q ss_pred CEEEEEECC---CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeC
Q 000936 148 DLVVSASLD---QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (1219)
Q Consensus 148 ~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~ 224 (1219)
+.|+..+.+ ..|.+||+.+++... +......+....|+|+|+.|+..+.
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~----------------------------Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQ----------------------------LTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEE----------------------------ccCCCCCccceEECCCCCEEEEEEC
Confidence 988876643 368999987754321 1122334567899999998875443
Q ss_pred ---CCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCC
Q 000936 225 ---DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ 260 (1219)
Q Consensus 225 ---dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g 260 (1219)
...|.++++.+++. ..+....+.+...+|+|..
T Consensus 391 ~~g~~~L~~vdl~~g~~---~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 391 NSNESELYLISLITKKT---RKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCceEEEEECCCCCE---EEeecCCCcccCceecCCC
Confidence 35688889888774 2333344556677888754
No 277
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=1.5e-07 Score=101.49 Aligned_cols=273 Identities=14% Similarity=0.151 Sum_probs=173.3
Q ss_pred CCeEEEEEcCCCe--E-EEEEccCCCCEEEEEEcCCCCEEEEEECC---CeEEEEECCC--CeEE--EEEecCCCCeEEE
Q 000936 72 DYKIKVWNYKMHR--C-LFTLLGHLDYIRTVQFHHEYPWIVSASDD---QTIRIWNWQS--RTCI--SVLTGHNHYVMCA 141 (1219)
Q Consensus 72 Dg~I~vWd~~~~~--~-~~~l~~h~~~I~~l~fs~d~~~l~s~s~D---g~I~iwd~~s--~~~i--~~~~~h~~~V~~l 141 (1219)
+.-|.+|++.+.. . ...+..+.+.++-++|+|+++.|.++..+ |.|-.|.+.. |+.. ........+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 5679999987322 1 11223467788999999999988887654 6777777664 5432 2222233344789
Q ss_pred EEecCCCEEEEEEC-CCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCC----------CeEEE
Q 000936 142 SFHPKEDLVVSASL-DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR----------GVNWA 210 (1219)
Q Consensus 142 ~~sp~~~~l~s~s~-dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~V~~l 210 (1219)
++++++++++++.. .|.|.++-++..-.... ......|.+ .+...
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~------------------------~v~~~~h~g~~p~~rQ~~~h~H~a 150 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQP------------------------VVQVVKHTGSGPHERQESPHVHSA 150 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCcccc------------------------ceeeeecCCCCCCccccCCcccee
Confidence 99999998888764 58899998866311110 001112222 27789
Q ss_pred EEcCCCCEEEEEeC-CCeEEEEECCCCCeeeEEeec-CCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCC-ee---E
Q 000936 211 AFHPTLPLIVSGAD-DRQVKLWRMNETKAWEVDTLR-GHMNNVSCVMFHAKQDIIVSNSE-DKSIRVWDVTKR-TG---V 283 (1219)
Q Consensus 211 ~~sp~g~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~-~h~~~I~~l~~sp~g~~L~s~s~-dg~I~iwdl~~~-~~---~ 283 (1219)
.+.|+++++++.+- --.|.+|++..++..+..... ........+.|||++++....++ +++|.+|..... .. +
T Consensus 151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred eeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 99999999888752 335899999977653322211 23345689999999998877665 789999998873 22 2
Q ss_pred EEEec------CCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecC--CcceeeEe
Q 000936 284 QTFRR------EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFST--QKDTQVIP 355 (1219)
Q Consensus 284 ~~~~~------~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~--~~~~~~~~ 355 (1219)
+.+.. .......+..+|+|++|.++... ...|.+|.+.. ++...+..
T Consensus 231 Q~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg-------------------------~dsI~~f~V~~~~g~L~~~~~ 285 (346)
T COG2706 231 QTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG-------------------------HDSIAVFSVDPDGGKLELVGI 285 (346)
T ss_pred eeeccCccccCCCCceeEEEECCCCCEEEEecCC-------------------------CCeEEEEEEcCCCCEEEEEEE
Confidence 32221 12345567888999888876532 12333443332 22211222
Q ss_pred ecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCC
Q 000936 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (1219)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~ 399 (1219)
....+. .++.+.++|.|++++++.. ++..+.+|..+..
T Consensus 286 ~~teg~-----~PR~F~i~~~g~~Liaa~q-~sd~i~vf~~d~~ 323 (346)
T COG2706 286 TPTEGQ-----FPRDFNINPSGRFLIAANQ-KSDNITVFERDKE 323 (346)
T ss_pred eccCCc-----CCccceeCCCCCEEEEEcc-CCCcEEEEEEcCC
Confidence 222222 6889999999998877766 5557999998765
No 278
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.15 E-value=5.2e-06 Score=101.94 Aligned_cols=222 Identities=13% Similarity=0.104 Sum_probs=135.1
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECC----CCc
Q 000936 93 LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG----ALR 168 (1219)
Q Consensus 93 ~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~----~~~ 168 (1219)
.+.|.++.|..+...++.+..+|.|.+-|.++..... ...-...|.+++|+||+..++..+..+++.+-+-. ..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 3689999999999999999999999999987765432 22345779999999999999999988887765421 111
Q ss_pred ccc--ccCCcccee--eccccccccccccceE------EEEEee---cCCCeEEEEEcCCCCEEEEE-----eCCCeEEE
Q 000936 169 KKT--VSPADDILR--LSQMNTDLFGGVDAVV------KYVLEG---HDRGVNWAAFHPTLPLIVSG-----ADDRQVKL 230 (1219)
Q Consensus 169 ~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~---~~~~V~~l~~sp~g~~l~sg-----~~dg~I~i 230 (1219)
... ..+....+. +.+..+++.|...... .....+ -...=++++|-.||.++++. ...+.|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 110 000011111 1111222222111000 000001 12233568999999999883 33379999
Q ss_pred EECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEE---eCCCcEEEEeCCCCeeEEEE----ecCCCCEEEEEEeCCCC
Q 000936 231 WRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN---SEDKSIRVWDVTKRTGVQTF----RREHDRFWILASHPEMN 303 (1219)
Q Consensus 231 wd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~---s~dg~I~iwdl~~~~~~~~~----~~~~~~i~~l~~sp~~~ 303 (1219)
||.. +.. -..-....+.-.+++|-|.|.++++- ++|+.|.++.- +|-....| +.....+..++|+.++.
T Consensus 227 ~drE-g~L--ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 227 YDRE-GAL--NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred eccc-chh--hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCC
Confidence 9987 332 11111222334679999999999885 34567999984 34333322 22233488999999999
Q ss_pred EEEE---EeCCC-eeEEEec
Q 000936 304 LLAA---GHDSG-MIVFKLE 319 (1219)
Q Consensus 304 ~la~---g~d~g-i~v~~l~ 319 (1219)
+||+ ...+. +.+|...
T Consensus 303 iLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred ceeeeecccccceEEEEEec
Confidence 9987 33333 6677553
No 279
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.13 E-value=3.8e-07 Score=102.83 Aligned_cols=241 Identities=12% Similarity=0.065 Sum_probs=149.7
Q ss_pred EcCCCCEEEEEeC----------CCeEEEEECCCCCeeeEEeecCC-------CCCeEEEEEccCCCEEEEEe-C-CCcE
Q 000936 212 FHPTLPLIVSGAD----------DRQVKLWRMNETKAWEVDTLRGH-------MNNVSCVMFHAKQDIIVSNS-E-DKSI 272 (1219)
Q Consensus 212 ~sp~g~~l~sg~~----------dg~I~iwd~~~~~~~~~~~~~~h-------~~~I~~l~~sp~g~~L~s~s-~-dg~I 272 (1219)
++|+|+.++++.. +..|.+||..+.+. +..+... ......+.++|||++|++.. . +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE--EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence 9999998877655 78999999999987 5444421 22334789999999998765 3 6889
Q ss_pred EEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEE--eCCeEEEEEecCCcc
Q 000936 273 RVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA--KDRFLRYYEFSTQKD 350 (1219)
Q Consensus 273 ~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~--~d~~i~v~d~~~~~~ 350 (1219)
.+.|+.+++.+.++.. |++..+...++.+.. ..+.++..+.+. .+|....-+.
T Consensus 131 ~VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~~~---------~~~~Dg~~~~v~~d~~g~~~~~~~----- 185 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDV-----------PDCYHIFPTANDTFF---------MHCRDGSLAKVGYGTKGNPKIKPT----- 185 (352)
T ss_pred EEEECCCCcEEEEEeC-----------CCCcEEEEecCCccE---------EEeecCceEEEEecCCCceEEeee-----
Confidence 9999999999988875 333333322222211 112223333322 2333221110
Q ss_pred eeeEeecCCCCCCCCCCCeEEEEcc-CCCEEEEEEeCCCCEEEEEEecCCCCCCCc--ccc--c-----cccCceeEEEE
Q 000936 351 TQVIPIRRPGSTSLNQSPRTLSYSP-TENAVLICSDVDGGSYELYVIPKDSIGRGD--SVQ--D-----AKKGLGGSAIF 420 (1219)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~llv~~~~~dg~i~l~~~~~~~~~~~~--~~~--~-----~~~~~i~~~~f 420 (1219)
+++..... .+...+ .|++ +|+++.++.. |.+.+.++......... ... . -..+...-+++
T Consensus 186 -~vf~~~~~---~v~~rP---~~~~~dg~~~~vs~e---G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 186 -EVFHPEDE---YLINHP---AYSNKSGRLVWPTYT---GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred -eeecCCcc---ccccCC---ceEcCCCcEEEEecC---CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 01000000 000022 4455 7877766655 88888886544321111 000 0 11222344899
Q ss_pred EeCCeEEEEEc----------CCCEEEEEecC-CceeEeeeCCcceEEEEEeCCCc-EEEEe---CCeEEEEEcCCCeEE
Q 000936 421 IARNRFAVLDK----------SSNQVLVKNLK-NEVVKKSILPIAADAIFYAGTGN-LLCRA---EDRVVIFDLQQRLVL 485 (1219)
Q Consensus 421 s~d~~~l~~~~----------~dg~I~Iwdl~-~~~~~~i~~~~~v~~l~~s~dg~-~L~s~---d~~I~l~dl~~~~~l 485 (1219)
+++++.+.... ..+.|.++|.. .+.+..+.....+..|+++|||+ +|... ++.|.++|+.+++.+
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 99987766632 23589999999 77888888777999999999999 77553 578999999999999
Q ss_pred EEEe
Q 000936 486 GDLQ 489 (1219)
Q Consensus 486 ~~~~ 489 (1219)
.++.
T Consensus 336 ~~i~ 339 (352)
T TIGR02658 336 SSVN 339 (352)
T ss_pred eeec
Confidence 9883
No 280
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.09 E-value=2.1e-08 Score=113.97 Aligned_cols=189 Identities=16% Similarity=0.261 Sum_probs=156.9
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCeEEEEecc---cCCCEEEEEEe--------------------cCCCEEEEEECCCe
Q 000936 18 HSKRPWILASLHSGVIQLWDYRMGTLIDRFDE---HDGPVRGVHFH--------------------KSQPLFVSGGDDYK 74 (1219)
Q Consensus 18 spdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~---h~~~V~~l~fs--------------------p~~~~Lasgs~Dg~ 74 (1219)
.|-+.++|....||.+++|+..+++....|.. -.+..++..|. .+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 35677899999999999999999988887742 23445555552 13346788888999
Q ss_pred EEEEEcCCCeEEEEEc--cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEE
Q 000936 75 IKVWNYKMHRCLFTLL--GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVS 152 (1219)
Q Consensus 75 I~vWd~~~~~~~~~l~--~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s 152 (1219)
|.+|+...|+....+. .|.+.|.++.++.+...|.|++.|+.+..|+..+++.++.+......+.+++.+||+..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999998888775 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCC-----CCEEEEE-eCCC
Q 000936 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-----LPLIVSG-ADDR 226 (1219)
Q Consensus 153 ~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~-----g~~l~sg-~~dg 226 (1219)
++ ++|.+||+++.+ +...+.||.++|++++|.-+ |.+++++ ..+.
T Consensus 162 as--~~ik~~~~~~ke---------------------------vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKE---------------------------VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred cc--ceEEEEEccCce---------------------------EEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 87 789999998855 35578999999999999876 6666554 4456
Q ss_pred eEEEEECCC
Q 000936 227 QVKLWRMNE 235 (1219)
Q Consensus 227 ~I~iwd~~~ 235 (1219)
.+.+|-...
T Consensus 213 ~i~~w~v~~ 221 (541)
T KOG4547|consen 213 GITVWVVEK 221 (541)
T ss_pred ceeEEEEEc
Confidence 677786554
No 281
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.07 E-value=2.2e-08 Score=113.79 Aligned_cols=188 Identities=14% Similarity=0.180 Sum_probs=151.0
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCeEEEEEcc---CCCCEEEEEEc--------------------CCCCEEEEEECCCeE
Q 000936 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG---HLDYIRTVQFH--------------------HEYPWIVSASDDQTI 117 (1219)
Q Consensus 61 p~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~---h~~~I~~l~fs--------------------~d~~~l~s~s~Dg~I 117 (1219)
|.+.++|....||.+++|+..+++....+.. -++..++..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887776643 22344444442 233467888889999
Q ss_pred EEEECCCCeEEEEEe--cCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccce
Q 000936 118 RIWNWQSRTCISVLT--GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1219)
Q Consensus 118 ~iwd~~s~~~i~~~~--~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1219)
.+|++..|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-------------------------- 136 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-------------------------- 136 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee--------------------------
Confidence 999999999888775 6899999999998889999999999999999877443
Q ss_pred EEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccC-----CCEEEEE-eCC
Q 000936 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-----QDIIVSN-SED 269 (1219)
Q Consensus 196 ~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~-----g~~L~s~-s~d 269 (1219)
..........+.+++.+|||..+++++ ++|++||+.+.+. +.++.||.++|++++|..+ |.+++++ ..+
T Consensus 137 -~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev--v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 137 -IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV--VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred -eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceE--EEEecCCCcceEEEEEEEeccccccceeeeccccc
Confidence 335566777889999999999999886 7899999999998 8999999999999999876 6666654 344
Q ss_pred CcEEEEeCCC
Q 000936 270 KSIRVWDVTK 279 (1219)
Q Consensus 270 g~I~iwdl~~ 279 (1219)
.-+.+|-+..
T Consensus 212 r~i~~w~v~~ 221 (541)
T KOG4547|consen 212 RGITVWVVEK 221 (541)
T ss_pred cceeEEEEEc
Confidence 4577776543
No 282
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=8.6e-10 Score=137.31 Aligned_cols=192 Identities=18% Similarity=0.348 Sum_probs=157.5
Q ss_pred ccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEec-ccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeE
Q 000936 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC 85 (1219)
Q Consensus 7 ~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~-~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~ 85 (1219)
-|-..|.+|.=||..++-++|+.||.|++|....++.+..++ .....|+.+.|+.+|+.+..+..||.+.+|... .++
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccc
Confidence 355678999999999999999999999999999998887775 334889999999999999999999999999986 677
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEE---CCCeEEEEECC-CCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000936 86 LFTLLGHLDYIRTVQFHHEYPWIVSAS---DDQTIRIWNWQ-SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (1219)
Q Consensus 86 ~~~l~~h~~~I~~l~fs~d~~~l~s~s---~Dg~I~iwd~~-s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~v 161 (1219)
....+.|......+.|-. ..+++++ +++.+.+||.. .+..-..-+.|.+.++++++.|...++++|+.+|.|++
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence 777888999888888876 4566653 57899999964 22222223889999999999999999999999999999
Q ss_pred EECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 000936 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1219)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~ 238 (1219)
||++..+.....+ . ++ ...++++|+..|.++||++.....
T Consensus 2363 ~D~rqrql~h~~~--------------------------------~----~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQ--------------------------------A----LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred eehHHHHHHHHhh--------------------------------h----hh-hhheeeccCcccceEEEEccccch
Confidence 9998755433111 1 44 557899999999999999987754
No 283
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.04 E-value=2.4e-08 Score=103.77 Aligned_cols=240 Identities=17% Similarity=0.140 Sum_probs=164.1
Q ss_pred CCEEEEEEeC---CCC-EEEEEECCCeEEEEECCCCeEEEEecccC---C---CEEEEEEecCCCEEEEEECCCeEEEEE
Q 000936 10 NRVKGLSFHS---KRP-WILASLHSGVIQLWDYRMGTLIDRFDEHD---G---PVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (1219)
Q Consensus 10 ~~V~~i~fsp---dg~-~Lasg~~dg~I~iWd~~~g~~i~~l~~h~---~---~V~~l~fsp~~~~Lasgs~Dg~I~vWd 79 (1219)
+.+..|.|.. +|. .++-+-..|.|+++..........+.+-+ - .-.++.|++.+..++++-.+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 4456666653 444 45566678899999865444444443221 1 235788999999999999999999777
Q ss_pred cCCCeEE--EEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECC-CCeEEEE-EecCCCCeEEEEEecC-CCEEEEE
Q 000936 80 YKMHRCL--FTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQ-SRTCISV-LTGHNHYVMCASFHPK-EDLVVSA 153 (1219)
Q Consensus 80 ~~~~~~~--~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~-s~~~i~~-~~~h~~~V~~l~~sp~-~~~l~s~ 153 (1219)
....... +++++|.-.++...|+...+ .+.+|++|+.+..||++ .++.+.. .+.|...|.++.-+|. +.++++|
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 6555443 47889999999999987665 88899999999999998 4555554 5678899999988874 5799999
Q ss_pred ECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCC--EEEEEeCCCeEEEE
Q 000936 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP--LIVSGADDRQVKLW 231 (1219)
Q Consensus 154 s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~--~l~sg~~dg~I~iw 231 (1219)
+.|-.|++||.+...+.... ..-.++|..+.++|.-. +++++-. +-.+|-
T Consensus 230 sYDe~i~~~DtRnm~kPl~~---------------------------~~v~GGVWRi~~~p~~~~~lL~~CMh-~G~ki~ 281 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLFK---------------------------AKVGGGVWRIKHHPEIFHRLLAACMH-NGAKIL 281 (339)
T ss_pred ccccceeeeehhcccCcccc---------------------------CccccceEEEEecchhhhHHHHHHHh-cCceEE
Confidence 99999999999875443211 11237889999998533 3344333 346777
Q ss_pred ECCCCCee---eEEeecCCCCCeEEEEEccCCCEEEEEe-CCCcEE-EEeC
Q 000936 232 RMNETKAW---EVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIR-VWDV 277 (1219)
Q Consensus 232 d~~~~~~~---~~~~~~~h~~~I~~l~~sp~g~~L~s~s-~dg~I~-iwdl 277 (1219)
+++..... .......|.+-...-.|......|++++ .|+.++ +|-.
T Consensus 282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred Eecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence 76655432 2344556666666666654456677765 344433 5543
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.02 E-value=2.3e-07 Score=120.93 Aligned_cols=261 Identities=15% Similarity=0.176 Sum_probs=165.3
Q ss_pred EEEEEeCC-CCEEEEEECCCeEEEEECCCCeEEEEecc--c------------CCCEEEEEEecCCCEEEEE-ECCCeEE
Q 000936 13 KGLSFHSK-RPWILASLHSGVIQLWDYRMGTLIDRFDE--H------------DGPVRGVHFHKSQPLFVSG-GDDYKIK 76 (1219)
Q Consensus 13 ~~i~fspd-g~~Lasg~~dg~I~iWd~~~g~~i~~l~~--h------------~~~V~~l~fsp~~~~Lasg-s~Dg~I~ 76 (1219)
..++++++ +...++-..++.|++||. +|..+..+.+ . -..-.++++++++..|+++ +.++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46889885 445555566788999996 4555544432 1 1234789999988866555 4557899
Q ss_pred EEEcCCCeEEEEEccC-----------------CCCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecC----
Q 000936 77 VWNYKMHRCLFTLLGH-----------------LDYIRTVQFHH-EYPWIVSASDDQTIRIWNWQSRTCISVLTGH---- 134 (1219)
Q Consensus 77 vWd~~~~~~~~~l~~h-----------------~~~I~~l~fs~-d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h---- 134 (1219)
++|..++. +.++.+. ...-..++|+| ++..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99987754 3333210 11346799999 4556667677899999998877543 22111
Q ss_pred -----------CCCeEEEEEecCCC-EEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEee
Q 000936 135 -----------NHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1219)
Q Consensus 135 -----------~~~V~~l~~sp~~~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1219)
-.....++++|+++ ++++.+.++.|++||+.++............ ..+...++..++... ..
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~---~~~l~~fG~~dG~g~---~~ 801 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF---SDNLFKFGDHDGVGS---EV 801 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc---CcccccccCCCCchh---hh
Confidence 12356799999998 4555566789999998865432110000000 000001111111000 01
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEe-----------ecCCCCCeEEEEEccCCCEEEEEeCCCc
Q 000936 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT-----------LRGHMNNVSCVMFHAKQDIIVSNSEDKS 271 (1219)
Q Consensus 203 ~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~-----------~~~h~~~I~~l~~sp~g~~L~s~s~dg~ 271 (1219)
.-.....++++++|.++++-+.++.|++||..++....+.. ..+.......++++++|+++++.+.++.
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL 881 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence 11234578999999999999999999999998776421111 0112235788999999999999999999
Q ss_pred EEEEeCCCCee
Q 000936 272 IRVWDVTKRTG 282 (1219)
Q Consensus 272 I~iwdl~~~~~ 282 (1219)
|++||+.+++.
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999988765
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.00 E-value=2e-09 Score=134.17 Aligned_cols=218 Identities=18% Similarity=0.307 Sum_probs=169.5
Q ss_pred CCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEc-cCCCCEEEEEEcCCCCE
Q 000936 29 HSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL-GHLDYIRTVQFHHEYPW 107 (1219)
Q Consensus 29 ~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~-~h~~~I~~l~fs~d~~~ 107 (1219)
-++...-|..+.+... ++.|-..|+++.=||..++.+||+.||.|++|.+..+..+..+. .-...|+.+.|+.+|+.
T Consensus 2188 ~~~~~~tq~~~~~~~~--~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk 2265 (2439)
T KOG1064|consen 2188 LPWLGSTQTSRGASVM--IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNK 2265 (2439)
T ss_pred CCccccceecccceeE--eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCc
Confidence 3444444553332222 22355678999999999999999999999999998888777664 23378999999999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEE---CCCeEEEEECCCCccccccCCccceeeccc
Q 000936 108 IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS---LDQTVRVWDIGALRKKTVSPADDILRLSQM 184 (1219)
Q Consensus 108 l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s---~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~ 184 (1219)
+..+..||.+.+|... .++....+.|+.......|-. ..+++++ .++.+.+||.--....
T Consensus 2266 ~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-------------- 2328 (2439)
T KOG1064|consen 2266 FGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-------------- 2328 (2439)
T ss_pred eeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc--------------
Confidence 9999999999999976 667777788999988888875 5566654 4678999996542211
Q ss_pred cccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEE
Q 000936 185 NTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIV 264 (1219)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~ 264 (1219)
-++...|.++++++++.|..++|++|+.+|.|++||++..+. .+++.. ++ ...+++
T Consensus 2329 ------------s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql--~h~~~~---------~~-~~~~f~ 2384 (2439)
T KOG1064|consen 2329 ------------SLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL--RHTFQA---------LD-TREYFV 2384 (2439)
T ss_pred ------------ceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH--HHHhhh---------hh-hhheee
Confidence 123378999999999999999999999999999999988775 434332 44 567899
Q ss_pred EEeCCCcEEEEeCCCCeeEEEEecC
Q 000936 265 SNSEDKSIRVWDVTKRTGVQTFRRE 289 (1219)
Q Consensus 265 s~s~dg~I~iwdl~~~~~~~~~~~~ 289 (1219)
+++..|.|+||++.....+.++...
T Consensus 2385 ~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred ccCcccceEEEEccccchhhcCchh
Confidence 9999999999999987777766543
No 286
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.00 E-value=1e-07 Score=99.14 Aligned_cols=270 Identities=13% Similarity=0.091 Sum_probs=176.7
Q ss_pred CCCEEEEEEeCCCCEEEEEE------------CCCeEEEEECCCCeEEE--Ee-cccCCCEEEEEEec---CCC-EEEEE
Q 000936 9 SNRVKGLSFHSKRPWILASL------------HSGVIQLWDYRMGTLID--RF-DEHDGPVRGVHFHK---SQP-LFVSG 69 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~Lasg~------------~dg~I~iWd~~~g~~i~--~l-~~h~~~V~~l~fsp---~~~-~Lasg 69 (1219)
.-++.|++--++ .||+|+ ..|.+.+|++.+.+.+. ++ ....+.+..+.|.- +|. .++-+
T Consensus 14 ~~~~C~l~~~~~--vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a 91 (339)
T KOG0280|consen 14 PVPICCLCHTRN--VLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDA 91 (339)
T ss_pred CCCccccccccc--eEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeec
Confidence 344445444433 777774 35789999987765443 11 22345577788864 444 55666
Q ss_pred ECCCeEEEEEcCCCeEEEEEccCCC------CEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE--EEEecCCCCeEEE
Q 000936 70 GDDYKIKVWNYKMHRCLFTLLGHLD------YIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI--SVLTGHNHYVMCA 141 (1219)
Q Consensus 70 s~Dg~I~vWd~~~~~~~~~l~~h~~------~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i--~~~~~h~~~V~~l 141 (1219)
-.+|.|.++..........+.+-+. ...++.|++.+..++++..+|.+.+-+....... +.++.|.-....+
T Consensus 92 ~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta 171 (339)
T KOG0280|consen 92 HARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTA 171 (339)
T ss_pred cccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeee
Confidence 7789999998765544444443221 2457889999999999999999997765555443 3788999999999
Q ss_pred EEecCC-CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcC-CCCEE
Q 000936 142 SFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLI 219 (1219)
Q Consensus 142 ~~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l 219 (1219)
.|+... +.+.+|+.|+.+..||++..... +.....-|..+|.++.-+| .+.++
T Consensus 172 ~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-------------------------i~~n~kvH~~GV~SI~ss~~~~~~I 226 (339)
T KOG0280|consen 172 KFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-------------------------IWHNSKVHTSGVVSIYSSPPKPTYI 226 (339)
T ss_pred ecccCCCceEEecCCCceEEEEEecCCcce-------------------------eeecceeeecceEEEecCCCCCceE
Confidence 998654 78999999999999999842211 1112456889999998886 56799
Q ss_pred EEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCee-----EEEEecCCCC
Q 000936 220 VSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK--QDIIVSNSEDKSIRVWDVTKRTG-----VQTFRREHDR 292 (1219)
Q Consensus 220 ~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~--g~~L~s~s~dg~I~iwdl~~~~~-----~~~~~~~~~~ 292 (1219)
++|+.|-.|++||.++.... +.. ..-.+.|+.+.++|. +.+|+++-.+| .+|-+.+.+.. ....+.|.+-
T Consensus 227 ~TGsYDe~i~~~DtRnm~kP-l~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl 303 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRNMGKP-LFK-AKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSL 303 (339)
T ss_pred EEeccccceeeeehhcccCc-ccc-CccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccce
Confidence 99999999999999854431 222 223478999999984 33455555554 56666654432 2233344444
Q ss_pred EEEEEEeCCCCEEEEE
Q 000936 293 FWILASHPEMNLLAAG 308 (1219)
Q Consensus 293 i~~l~~sp~~~~la~g 308 (1219)
.+.-.|......+|++
T Consensus 304 ~YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 304 CYGGDWDSKDSFLATC 319 (339)
T ss_pred eeccccccccceeeee
Confidence 4444443333445553
No 287
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.91 E-value=1e-06 Score=103.96 Aligned_cols=263 Identities=8% Similarity=-0.009 Sum_probs=157.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEE
Q 000936 20 KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTV 99 (1219)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l 99 (1219)
.+..+.+++.+|.|.-+|..+|+.+.++........... .++..+++++.++.+..+|..+|+.+...... +.+.+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecC
Confidence 356788888899999999999999887754433222222 24667888889999999999999988776532 222221
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeE-----EEEEecCCCEEEEEECCCeEEEEECCCCccccccC
Q 000936 100 QFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVM-----CASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSP 174 (1219)
Q Consensus 100 ~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~-----~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~ 174 (1219)
-.. .+..++.++.++.+..||..+|+.+.........+. +.... +..++.++.+|.+..+|..+++..-...
T Consensus 141 p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 141 PLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 111 234677778899999999999998877654332111 11122 3467888888999999988776432111
Q ss_pred Cccc------------eeec-ccccccc-ccccceEEEEEeecCCCeEEE-------EEcCCCCEEEEEeCCCeEEEEEC
Q 000936 175 ADDI------------LRLS-QMNTDLF-GGVDAVVKYVLEGHDRGVNWA-------AFHPTLPLIVSGADDRQVKLWRM 233 (1219)
Q Consensus 175 ~~~~------------~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~V~~l-------~~sp~g~~l~sg~~dg~I~iwd~ 233 (1219)
.... ...+ -.+..++ ...++. .+.+....+.+.+- .....+..+++++.+|.+..+|.
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR-VAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDR 296 (377)
T ss_pred cccCCCCCchhhhhccCCccEEECCEEEEEEcCCE-EEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEEC
Confidence 0000 0000 0000111 111111 11111111111110 11123567888888999999999
Q ss_pred CCCCeeeEEeecCC-CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCE
Q 000936 234 NETKAWEVDTLRGH-MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRF 293 (1219)
Q Consensus 234 ~~~~~~~~~~~~~h-~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i 293 (1219)
.+++. +-..... .....+... .+..+++++.+|.++++|..+++.+..+..+...+
T Consensus 297 ~tG~~--~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~ 353 (377)
T TIGR03300 297 RSGSE--LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGI 353 (377)
T ss_pred CCCcE--EEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence 88764 2222111 111222222 36788999999999999999999988877655443
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.88 E-value=6.1e-07 Score=92.17 Aligned_cols=233 Identities=9% Similarity=0.014 Sum_probs=154.8
Q ss_pred CCCeEEEEECCCCe--EEEEecccCCCEEEEEEecC-----CCEEEEEECCCeEEEEEcCCCeEEEE-EccCCCCEEEEE
Q 000936 29 HSGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHKS-----QPLFVSGGDDYKIKVWNYKMHRCLFT-LLGHLDYIRTVQ 100 (1219)
Q Consensus 29 ~dg~I~iWd~~~g~--~i~~l~~h~~~V~~l~fsp~-----~~~Lasgs~Dg~I~vWd~~~~~~~~~-l~~h~~~I~~l~ 100 (1219)
....+-+|+..+.. .+... +.+.|.|. ..+|+.||..|...+|...+.+.... ...|...|+-+.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 34456777765442 22222 45667663 34899999999999999986543332 233443333222
Q ss_pred EcCCC-CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccce
Q 000936 101 FHHEY-PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIL 179 (1219)
Q Consensus 101 fs~d~-~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~ 179 (1219)
=.-+. -.+..++.|.++++.++..+.......-.+-.+.+++++++++++++.+....|..|.+.......
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~-------- 194 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI-------- 194 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcccee--------
Confidence 11122 246677888899988876544332222112237899999999999999999999999987632211
Q ss_pred eeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee---eEEeecCCCCCeEEEEE
Q 000936 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW---EVDTLRGHMNNVSCVMF 256 (1219)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~---~~~~~~~h~~~I~~l~~ 256 (1219)
...........-.+..|+.....++++..||++.|||++..... ...+-..|.+.+..+.|
T Consensus 195 ----------------~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~F 258 (344)
T KOG4532|consen 195 ----------------ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRF 258 (344)
T ss_pred ----------------eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEe
Confidence 12233344455577899999999999999999999999865431 12333568999999999
Q ss_pred ccCCC--EEEEEeCCCcEEEEeCCCCeeEEEEecCCCC
Q 000936 257 HAKQD--IIVSNSEDKSIRVWDVTKRTGVQTFRREHDR 292 (1219)
Q Consensus 257 sp~g~--~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~ 292 (1219)
++.|. +|+..-.-+.+.+.|++++...+.+....+.
T Consensus 259 sl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~ 296 (344)
T KOG4532|consen 259 SLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV 296 (344)
T ss_pred cCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc
Confidence 98663 4555555678999999998887776654443
No 289
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.87 E-value=5.3e-08 Score=101.35 Aligned_cols=255 Identities=19% Similarity=0.330 Sum_probs=170.5
Q ss_pred cCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCC-----eEEEEecccC------------CCEEEEEEecCCC--EEEE
Q 000936 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-----TLIDRFDEHD------------GPVRGVHFHKSQP--LFVS 68 (1219)
Q Consensus 8 h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g-----~~i~~l~~h~------------~~V~~l~fsp~~~--~Las 68 (1219)
..+.|+++.|...|.||++|...|.|.+|.-+.. +....|++|+ ..|..+.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3467999999999999999999999999985432 2233455554 3488899976543 5677
Q ss_pred EECCCeEEEEEcCCCe-------------------EE-----------------------EEE-ccCCCCEEEEEEcCCC
Q 000936 69 GGDDYKIKVWNYKMHR-------------------CL-----------------------FTL-LGHLDYIRTVQFHHEY 105 (1219)
Q Consensus 69 gs~Dg~I~vWd~~~~~-------------------~~-----------------------~~l-~~h~~~I~~l~fs~d~ 105 (1219)
.+.|.+|++|.+.... ++ +.. ..|...|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999764320 00 001 3577778899999998
Q ss_pred CEEEEEECCCeEEEEECCCCe---EEEEEecCC-----CCeEEEEEecCC-CEEEEEECCCeEEEEECCCCccccccCCc
Q 000936 106 PWIVSASDDQTIRIWNWQSRT---CISVLTGHN-----HYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPAD 176 (1219)
Q Consensus 106 ~~l~s~s~Dg~I~iwd~~s~~---~i~~~~~h~-----~~V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~ 176 (1219)
..++++ +|=.|.+|++.-.. .+.-++.|+ .-|++..|+|.. +.+...+..|.|++-|++....-..
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn---- 259 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN---- 259 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC----
Confidence 888775 47789999986322 223334443 348899999976 5677778899999999984221100
Q ss_pred cceeecccccccc-ccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCC-------
Q 000936 177 DILRLSQMNTDLF-GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM------- 248 (1219)
Q Consensus 177 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~------- 248 (1219)
...++ ...++.-..-+.+-.+.|..+.|+++|+++++-+ --+|++||.+..+. ++.+..-|.
T Consensus 260 --------~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~-pikTi~~h~~l~~~l~ 329 (460)
T COG5170 260 --------SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKN-PIKTIPMHCDLMDELN 329 (460)
T ss_pred --------chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccC-CceeechHHHHHHHHH
Confidence 00000 0111112223344567788999999999888765 46899999987664 355554332
Q ss_pred -----CCe---EEEEEccCCCEEEEEeCCCcEEEEeC
Q 000936 249 -----NNV---SCVMFHAKQDIIVSNSEDKSIRVWDV 277 (1219)
Q Consensus 249 -----~~I---~~l~~sp~g~~L~s~s~dg~I~iwdl 277 (1219)
..| ..+.||.+.+.+++|+.....-+|-.
T Consensus 330 d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 330 DVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred hhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 122 34778888888999887777777653
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=1.7e-08 Score=115.84 Aligned_cols=263 Identities=18% Similarity=0.225 Sum_probs=178.5
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEECCCC-eEEEEecccCC--CEEEEEEecC--CCEEEEEECCCeEEEEEcC--
Q 000936 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-TLIDRFDEHDG--PVRGVHFHKS--QPLFVSGGDDYKIKVWNYK-- 81 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g-~~i~~l~~h~~--~V~~l~fsp~--~~~Lasgs~Dg~I~vWd~~-- 81 (1219)
.+++..++.+|.|+-+|.++.-| +.+-|+... +...-+ .|-. .|-.+.|+|. .++-++......-.+|++.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 35678899999999999998877 556676543 322222 2322 3667788774 3455555556677899984
Q ss_pred -CCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCe-EEEEEecCCCCeEEEEEecCCCEEEEEECCCe
Q 000936 82 -MHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRT-CISVLTGHNHYVMCASFHPKEDLVVSASLDQT 158 (1219)
Q Consensus 82 -~~~~~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~-~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~ 158 (1219)
+...-+.+.+|+..|+.+.|+|..+ .+++++.|..+..||+++.. ++..+..-...-..+.|+-....+.+.+..+.
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 3456677889999999999999887 78899999999999998754 45555554555677899887766777777889
Q ss_pred EEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC
Q 000936 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVSGADDRQVKLWRMNETK 237 (1219)
Q Consensus 159 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~-g~~l~sg~~dg~I~iwd~~~~~ 237 (1219)
|++||.+.+.. +...+.+|...|+.+.|..- ...+.+++.||+|++||.....
T Consensus 182 i~vwd~r~gs~--------------------------pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 182 IFVWDLRKGST--------------------------PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred eEEEeccCCCc--------------------------ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 99999987432 45577788888999888752 3468889999999999987654
Q ss_pred eeeEEeecCCCCCeEEEEEccCCCEEEE--EeCCCcEEEE---------eCCC-CeeEEEEecCCCCEEEEEEeC
Q 000936 238 AWEVDTLRGHMNNVSCVMFHAKQDIIVS--NSEDKSIRVW---------DVTK-RTGVQTFRREHDRFWILASHP 300 (1219)
Q Consensus 238 ~~~~~~~~~h~~~I~~l~~sp~g~~L~s--~s~dg~I~iw---------dl~~-~~~~~~~~~~~~~i~~l~~sp 300 (1219)
...-. ......+|..-.+.|-|+-.+. .-.+..+.++ +..+ .+++.+|.+|.+.|...-|-.
T Consensus 236 ~e~~~-~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 236 TESKR-TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred cccce-eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 42222 2234456666677775432221 1112233333 3222 355777777777665554443
No 291
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.86 E-value=2.5e-06 Score=111.49 Aligned_cols=262 Identities=11% Similarity=0.179 Sum_probs=160.2
Q ss_pred EEEEEecC-CCEEEEEECCCeEEEEEcCCCeEEEEEcc--------------CCCCEEEEEEcCCCCEEEEEEC-CCeEE
Q 000936 55 RGVHFHKS-QPLFVSGGDDYKIKVWNYKMHRCLFTLLG--------------HLDYIRTVQFHHEYPWIVSASD-DQTIR 118 (1219)
Q Consensus 55 ~~l~fsp~-~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~--------------h~~~I~~l~fs~d~~~l~s~s~-Dg~I~ 118 (1219)
..++++++ +.++++-+.++.|.+||.. +..+..+.+ +-.....+++.+++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46888875 5677777788999999976 444444432 1124578999998886666554 57899
Q ss_pred EEECCCCeEEEEEecC-----------------CCCeEEEEEec-CCCEEEEEECCCeEEEEECCCCccccccCCcccee
Q 000936 119 IWNWQSRTCISVLTGH-----------------NHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180 (1219)
Q Consensus 119 iwd~~s~~~i~~~~~h-----------------~~~V~~l~~sp-~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~ 180 (1219)
++|..++.. .++.+. -.....++++| ++..+++.+.++.|++||..++........
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~----- 723 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGD----- 723 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecC-----
Confidence 999877653 333210 11246799999 556677777889999999876543221110
Q ss_pred eccccccccccccceEEEEEeecCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeEE-----------eecC--
Q 000936 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVD-----------TLRG-- 246 (1219)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~-~l~sg~~dg~I~iwd~~~~~~~~~~-----------~~~~-- 246 (1219)
+... ..+... .....-.....++++|++. ++++-+.++.|++||+.++....+. .+..
T Consensus 724 ----G~~~--~~~g~~--~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 724 ----GYER--NLNGSS--GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred ----Cccc--cCCCCc--cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 0000 000000 0011123457799999988 5556667799999999876531111 0000
Q ss_pred ------CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC-------------CCCEEEEEEeCCCCEEEE
Q 000936 247 ------HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE-------------HDRFWILASHPEMNLLAA 307 (1219)
Q Consensus 247 ------h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~-------------~~~i~~l~~sp~~~~la~ 307 (1219)
......+++++++|.++++.+.++.|++||..++......... -.....++++++|+++++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 1123468899999999999999999999999877654322110 113445555555554444
Q ss_pred EeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeec
Q 000936 308 GHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIR 357 (1219)
Q Consensus 308 g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~ 357 (1219)
.. .++.|++||+.+++......+.
T Consensus 876 Dt--------------------------~Nn~Irvid~~~~~~~~~~~l~ 899 (1057)
T PLN02919 876 DT--------------------------NNSLIRYLDLNKGEAAEILTLE 899 (1057)
T ss_pred EC--------------------------CCCEEEEEECCCCccceeEeec
Confidence 33 4778889998887653333333
No 292
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3e-06 Score=99.71 Aligned_cols=188 Identities=15% Similarity=0.196 Sum_probs=122.1
Q ss_pred CCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCC
Q 000936 136 HYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (1219)
Q Consensus 136 ~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~ 215 (1219)
..+.|++++ ++.++.|+.+|.|++++....-. ....|... ..+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~-----------------------------~~~~~s~~------~~~ 82 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNPK-----------------------------TNFDHSSS------ILE 82 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCccc-----------------------------cccccccc------ccC
Confidence 446667776 67899999999999999866321 11223222 567
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccC-----CCEEEEEeCCCcEEEEeCC---CCeeEEEEe
Q 000936 216 LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-----QDIIVSNSEDKSIRVWDVT---KRTGVQTFR 287 (1219)
Q Consensus 216 g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~-----g~~L~s~s~dg~I~iwdl~---~~~~~~~~~ 287 (1219)
|.++++|+.||.|.|-.+-+.+. ..+. ....++.+++++|+ .+.+++|+.-| +.++.-+ ....+ ...
T Consensus 83 Gey~asCS~DGkv~I~sl~~~~~--~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~ 157 (846)
T KOG2066|consen 83 GEYVASCSDDGKVVIGSLFTDDE--ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLS 157 (846)
T ss_pred CceEEEecCCCcEEEeeccCCcc--ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eee
Confidence 99999999999999999988875 3222 23468899999997 56899999888 7776532 11111 344
Q ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCC
Q 000936 288 REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQS 367 (1219)
Q Consensus 288 ~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 367 (1219)
...++|.++.|. |+++|..++.|+.+++ ..+++.+...+.+.....+ ...
T Consensus 158 ~~eG~I~~i~W~--g~lIAWand~Gv~vyd---------------------------~~~~~~l~~i~~p~~~~R~-e~f 207 (846)
T KOG2066|consen 158 EGEGPIHSIKWR--GNLIAWANDDGVKVYD---------------------------TPTRQRLTNIPPPSQSVRP-ELF 207 (846)
T ss_pred cCccceEEEEec--CcEEEEecCCCcEEEe---------------------------ccccceeeccCCCCCCCCc-ccC
Confidence 456778888875 6778888877766554 4443333322222211111 235
Q ss_pred CeEEEEccCCCEEEEEEeCCCCEEEEEEecCC
Q 000936 368 PRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (1219)
Q Consensus 368 i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~ 399 (1219)
...+.|.++.+.+ +.-+ .+|.|..+...
T Consensus 208 pphl~W~~~~~LV-IGW~---d~v~i~~I~~~ 235 (846)
T KOG2066|consen 208 PPHLHWQDEDRLV-IGWG---DSVKICSIKKR 235 (846)
T ss_pred CCceEecCCCeEE-EecC---CeEEEEEEecc
Confidence 6678998876633 3222 47888888743
No 293
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=9.8e-09 Score=113.68 Aligned_cols=216 Identities=16% Similarity=0.257 Sum_probs=154.9
Q ss_pred EEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcC-------CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCe
Q 000936 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK-------MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQT 116 (1219)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~-------~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~ 116 (1219)
+..+.+|...|+.++--.+.+-+++++.|++|++|.++ +..|.++++.|+.+|.++-|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 45677999999999888888899999999999999985 345889999999999999999998888765 789
Q ss_pred EEEEECCCCeEEEEEe-----cCCCCeEEEEEecCCCEEE-EEECCCeEEEEECCCCccccccCCccceeeccccccccc
Q 000936 117 IRIWNWQSRTCISVLT-----GHNHYVMCASFHPKEDLVV-SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFG 190 (1219)
Q Consensus 117 I~iwd~~s~~~i~~~~-----~h~~~V~~l~~sp~~~~l~-s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1219)
|.+||.--++.+..+. +..+.|.|+.-- +...++ .++...+|+++|.+...-....
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~----------------- 867 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCEL----------------- 867 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceeeE-----------------
Confidence 9999987776665332 222334444221 233444 4478899999998875432110
Q ss_pred cccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCC
Q 000936 191 GVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK 270 (1219)
Q Consensus 191 ~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg 270 (1219)
......+...-+.+++..+.|++++.+-.+|.|.+.|.++++. +..++...-....++ .|..+.++....|.
T Consensus 868 -----kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v--INswrpmecdllqla-apsdq~L~~saldH 939 (1034)
T KOG4190|consen 868 -----KVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV--INSWRPMECDLLQLA-APSDQALAQSALDH 939 (1034)
T ss_pred -----EeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce--eccCCcccchhhhhc-CchhHHHHhhcccc
Confidence 0001133456688999999999999999999999999999986 555554444333333 35566777777788
Q ss_pred cEEE-EeCCCCeeEEEEe
Q 000936 271 SIRV-WDVTKRTGVQTFR 287 (1219)
Q Consensus 271 ~I~i-wdl~~~~~~~~~~ 287 (1219)
++.+ |...++....+.+
T Consensus 940 slaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 940 SLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred eeEeeehhcCCeeeeccC
Confidence 8888 8766655444333
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.81 E-value=4.2e-06 Score=88.08 Aligned_cols=234 Identities=13% Similarity=0.173 Sum_probs=144.3
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCC--eEEEEec---ccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 000936 15 LSFHSKRPWILASLHSGVIQLWDYRMG--TLIDRFD---EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1219)
Q Consensus 15 i~fspdg~~Lasg~~dg~I~iWd~~~g--~~i~~l~---~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1219)
++.+++|+.||+- .|..|.|-..++. ..+.+.+ .....=+-++||||+.+||.+...|+|.++|+.. ..++.+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 5678899988876 6788888776543 3333332 3333468899999999999999999999999864 445554
Q ss_pred ccC-------CCCEEEEEEcCCC------CEEEEEECCCeEEEEECCC-----CeEEEEEe---cCCCCeEEEEEecCCC
Q 000936 90 LGH-------LDYIRTVQFHHEY------PWIVSASDDQTIRIWNWQS-----RTCISVLT---GHNHYVMCASFHPKED 148 (1219)
Q Consensus 90 ~~h-------~~~I~~l~fs~d~------~~l~s~s~Dg~I~iwd~~s-----~~~i~~~~---~h~~~V~~l~~sp~~~ 148 (1219)
... ...|..+.|.+-. ..|++-..+|.++-|-+.. .+....+. .+...|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 321 2467777775532 1466667788888776532 23333333 3467899999999999
Q ss_pred EEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEE--EEEeCCC
Q 000936 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLI--VSGADDR 226 (1219)
Q Consensus 149 ~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l--~sg~~dg 226 (1219)
+|++|+.... ..+.. .....++++-..-.+.++. ++...|+
T Consensus 161 LLlVgG~~~~------~~~~s-------------------------------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~ 203 (282)
T PF15492_consen 161 LLLVGGCEQN------QDGMS-------------------------------KASSCGLTAWRILSDSPYYKQVTSSEDD 203 (282)
T ss_pred EEEEeccCCC------CCccc-------------------------------cccccCceEEEEcCCCCcEEEccccCcc
Confidence 8888775432 00000 0111122222221111111 1122121
Q ss_pred ------eEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC
Q 000936 227 ------QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE 289 (1219)
Q Consensus 227 ------~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~ 289 (1219)
+-.+|.+.+.+. ..........|..|..||||+.|++...+|.|.+|++.+-........+
T Consensus 204 ~~~~~~~~~~~~~~~~~~--fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 204 ITASSKRRGLLRIPSFKF--FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccccccccceeeccceee--eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 123444443321 1111234567999999999999999999999999999987766655433
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=3.4e-08 Score=109.51 Aligned_cols=182 Identities=17% Similarity=0.260 Sum_probs=131.0
Q ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECC-------CCeEEEEEecCCCCeEEEEEecCCCEEEEEECCC
Q 000936 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ-------SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (1219)
Q Consensus 85 ~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~-------s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg 157 (1219)
.+..+.||...|+.+.--.+.+-+++++.|.+|++|.++ +..|..+++.|..+|.++.|..+-++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 355678999999999877777889999999999999876 234777889999999999999888887765 78
Q ss_pred eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCC
Q 000936 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG-ADDRQVKLWRMNET 236 (1219)
Q Consensus 158 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg-~~dg~I~iwd~~~~ 236 (1219)
.|.+||.--++....... -...+..+.|.++. +-+...++.| +...+|+++|.+..
T Consensus 805 giHlWDPFigr~Laq~~d----------------------apk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsc 861 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMED----------------------APKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSC 861 (1034)
T ss_pred cceeecccccchhHhhhc----------------------CcccCCCceeEecc-cCcchheeeeccchhhheeeecccc
Confidence 999999754433211000 00111122233322 1133444444 67889999999876
Q ss_pred Ce---eeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC
Q 000936 237 KA---WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291 (1219)
Q Consensus 237 ~~---~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~ 291 (1219)
.. |.+....+...-+.+++..+.|++++++-.+|+|.+.|.++|+.+..++....
T Consensus 862 e~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec 919 (1034)
T KOG4190|consen 862 EWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC 919 (1034)
T ss_pred cceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc
Confidence 54 22333345566789999999999999999999999999999998876664443
No 296
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=1.8e-06 Score=101.92 Aligned_cols=193 Identities=11% Similarity=0.007 Sum_probs=125.8
Q ss_pred CEEEEEEeCCCCE-EEEEEC---CCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEE-C--CCeEEEEEcCCC
Q 000936 11 RVKGLSFHSKRPW-ILASLH---SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGG-D--DYKIKVWNYKMH 83 (1219)
Q Consensus 11 ~V~~i~fspdg~~-Lasg~~---dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs-~--Dg~I~vWd~~~~ 83 (1219)
.+..-.|||||+. ++..+. +..|.++|+.+|+..... ...+.+....|+|||+.++... . +..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778999999985 654433 356999999888655443 3566677788999998776543 2 357888898777
Q ss_pred eEEEEEccCCCCEEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECC----
Q 000936 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-Q--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD---- 156 (1219)
Q Consensus 84 ~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~D-g--~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d---- 156 (1219)
+. ..+..+........|+|||+.|+..++. + .|.+.|+.+++....... ... ...|+|+|+.++..+..
T Consensus 268 ~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 268 TL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred cE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcc
Confidence 63 3454444434556899999988776643 2 688889888776443332 112 24899999988877654
Q ss_pred -----CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCC---eE
Q 000936 157 -----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR---QV 228 (1219)
Q Consensus 157 -----g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg---~I 228 (1219)
..|.+.|+.++.... +... .......|+|||+.++..+.++ .+
T Consensus 344 ~~~~~~~I~v~d~~~g~~~~----------------------------LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L 394 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIRR----------------------------LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSAL 394 (419)
T ss_pred cCCCCcEEEEEECCCCCeEE----------------------------CCCC-CCcCCeEECCCCCEEEEEEccCCcEEE
Confidence 257777776643221 1111 1223478999999877665432 35
Q ss_pred EEEECCCCC
Q 000936 229 KLWRMNETK 237 (1219)
Q Consensus 229 ~iwd~~~~~ 237 (1219)
.+.+++...
T Consensus 395 ~~~~l~g~~ 403 (419)
T PRK04043 395 GIIRLNYNK 403 (419)
T ss_pred EEEecCCCe
Confidence 566666554
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=2.4e-06 Score=100.86 Aligned_cols=194 Identities=9% Similarity=0.071 Sum_probs=122.1
Q ss_pred CeEEEEEccCCCE-EEEEeCC---CcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceE
Q 000936 250 NVSCVMFHAKQDI-IVSNSED---KSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAF 325 (1219)
Q Consensus 250 ~I~~l~~sp~g~~-L~s~s~d---g~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~ 325 (1219)
......|+|||+. ++..+.+ ..|.++|+.+++...... ..+......|+|||+.++......
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~------------- 254 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPK------------- 254 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccC-------------
Confidence 6778999999984 5544333 469999998876654433 445556778999998887655321
Q ss_pred EecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCC--CCCC
Q 000936 326 AVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD--SIGR 403 (1219)
Q Consensus 326 s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~--~~~~ 403 (1219)
.+..|.++++.+++..++..... ......|+|||+.+++.+.. .+.-.||.++.. ...+
T Consensus 255 ----------g~~~Iy~~dl~~g~~~~LT~~~~--------~d~~p~~SPDG~~I~F~Sdr-~g~~~Iy~~dl~~g~~~r 315 (419)
T PRK04043 255 ----------GQPDIYLYDTNTKTLTQITNYPG--------IDVNGNFVEDDKRIVFVSDR-LGYPNIFMKKLNSGSVEQ 315 (419)
T ss_pred ----------CCcEEEEEECCCCcEEEcccCCC--------ccCccEECCCCCEEEEEECC-CCCceEEEEECCCCCeEe
Confidence 24567788887776443322111 12345799999999888763 344455555432 2211
Q ss_pred CccccccccCceeEEEEEeCCeEEEEEcCC---------CEEEEEecCCceeEeeeCCcceEEEEEeCCCcEEEEe----
Q 000936 404 GDSVQDAKKGLGGSAIFIARNRFAVLDKSS---------NQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRA---- 470 (1219)
Q Consensus 404 ~~~~~~~~~~~i~~~~fs~d~~~l~~~~~d---------g~I~Iwdl~~~~~~~i~~~~~v~~l~~s~dg~~L~s~---- 470 (1219)
+ ...+.. ...|+|||+.++..... ..|.+.|+.+...+.+..........|||||+.++..
T Consensus 316 l--t~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 316 V--VFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred C--ccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccC
Confidence 1 112211 24899999988776643 3678888886656666554433467899999988553
Q ss_pred -CCeEEEEEcCCC
Q 000936 471 -EDRVVIFDLQQR 482 (1219)
Q Consensus 471 -d~~I~l~dl~~~ 482 (1219)
...+.+.++..+
T Consensus 390 ~~~~L~~~~l~g~ 402 (419)
T PRK04043 390 NQSALGIIRLNYN 402 (419)
T ss_pred CcEEEEEEecCCC
Confidence 234666677544
No 298
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.78 E-value=1.1e-06 Score=90.46 Aligned_cols=243 Identities=13% Similarity=0.112 Sum_probs=160.6
Q ss_pred EEEEEeC-----CCCEEEEEECCCeEEEEECCCCeE-EEEecccCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCCCeE
Q 000936 13 KGLSFHS-----KRPWILASLHSGVIQLWDYRMGTL-IDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYKMHRC 85 (1219)
Q Consensus 13 ~~i~fsp-----dg~~Lasg~~dg~I~iWd~~~g~~-i~~l~~h~~~V~~l~fsp~-~~~Lasgs~Dg~I~vWd~~~~~~ 85 (1219)
+.|.|-| .-.+||.|+..|...+|...+.+. ......|...|+-+.=.-+ .-.+..++.|.++++.+++.+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 3566666 345899999999999999886543 3333445544432221112 22466677888888888764432
Q ss_pred EEEEccCCC--CEEEEEEcCCCCEEEEEECCCeEEEEECCCC-e-EEE-EEecCCCCeEEEEEecCCCEEEEEECCCeEE
Q 000936 86 LFTLLGHLD--YIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-T-CIS-VLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1219)
Q Consensus 86 ~~~l~~h~~--~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~-~-~i~-~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~ 160 (1219)
-... |.. .+.++.++++++|+++.++...|..|.+... + ... ........-.+..|+.....+++++.||++.
T Consensus 151 ~~~~--h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~ 228 (344)
T KOG4532|consen 151 KFAV--HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCA 228 (344)
T ss_pred ccee--eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEE
Confidence 2222 333 3788999999999999999999999988643 2 222 2223344456789999999999999999999
Q ss_pred EEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCe
Q 000936 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP--LIVSGADDRQVKLWRMNETKA 238 (1219)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~--~l~sg~~dg~I~iwd~~~~~~ 238 (1219)
|||++........ ....-..|.+.+..+.|++.|. +|+..-.-+.+.+.|+++.+.
T Consensus 229 I~DVR~~~tpm~~----------------------~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 229 IYDVRNMATPMAE----------------------ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred EEEecccccchhh----------------------hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 9999875543211 0112345889999999998764 455555567899999998876
Q ss_pred eeEEee-----cCCCCC-eEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000936 239 WEVDTL-----RGHMNN-VSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1219)
Q Consensus 239 ~~~~~~-----~~h~~~-I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~ 280 (1219)
.++... ..|... |....|+.++..+.+.+++. +.-|++.++
T Consensus 287 ~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~sr 333 (344)
T KOG4532|consen 287 HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSR 333 (344)
T ss_pred eeEEecCccccccccccccccccccCCCcccccccchh-hheeecccc
Confidence 433222 233333 77778887777776666543 555655543
No 299
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=4e-05 Score=91.12 Aligned_cols=374 Identities=13% Similarity=0.081 Sum_probs=211.8
Q ss_pred EccCCCEEEEEEeCCCC----EEEEEEecCCCC---CCCc---c----ccccccCceeEEEEEeCCeEEEEEcCCCEEEE
Q 000936 373 YSPTENAVLICSDVDGG----SYELYVIPKDSI---GRGD---S----VQDAKKGLGGSAIFIARNRFAVLDKSSNQVLV 438 (1219)
Q Consensus 373 ~spdg~~llv~~~~~dg----~i~l~~~~~~~~---~~~~---~----~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~I 438 (1219)
+.-+++.++++.+.+++ .+++|++..... ..+. . ..+....++.+++.+.+-+.+|.|-.||.|..
T Consensus 72 ~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~ 151 (933)
T KOG2114|consen 72 YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVIC 151 (933)
T ss_pred hcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEE
Confidence 34455555555554544 789999875422 1221 0 11223456788999999999999999999998
Q ss_pred EecC---Cce-eEee--eCCcceEEEEEeCCCcE--EEEeCCeEEEEEcCCCeE-EEEEecCC--eeEEEEcCCCCEEEE
Q 000936 439 KNLK---NEV-VKKS--ILPIAADAIFYAGTGNL--LCRAEDRVVIFDLQQRLV-LGDLQTPF--VKYVVWSNDMESVAL 507 (1219)
Q Consensus 439 wdl~---~~~-~~~i--~~~~~v~~l~~s~dg~~--L~s~d~~I~l~dl~~~~~-l~~~~~~~--v~~v~ws~dg~~la~ 507 (1219)
+.-+ .+- ...+ .+..+|+.+++..+++. ++.+...|.+|.++.+.+ +..+...+ .....+++...-+.+
T Consensus 152 ~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIc 231 (933)
T KOG2114|consen 152 YKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFIC 231 (933)
T ss_pred EcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEE
Confidence 8544 111 1222 22339999999999887 467789999999984442 33344433 333444433333777
Q ss_pred EeCCeEEEEecCccceeeeeeeeEEeeeEEecCC-eEEEEcCCeeeEEecCCceeEEEeccc--cEEEEEEeCCEEEEEe
Q 000936 508 LSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNG-VFIYTTLNHIKYCLPNGDSGIIRTLDV--PIYITKVSGNTIFCLD 584 (1219)
Q Consensus 508 ~s~~~i~i~~~~l~~~~~~~e~~~iks~~wd~~~-~~iy~t~~~iky~l~~g~~~~i~~~~~--~~~l~~~~~~~l~~l~ 584 (1219)
+....+++++.+-...|-..+-..-+-..|...+ ++++++..+..- .++.. ...+..+.
T Consensus 232 a~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~~~~~~~----------~s~s~ss~~~i~~~~-------- 293 (933)
T KOG2114|consen 232 AGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTTDKGTEN----------TSLSNSSSNRIFKAY-------- 293 (933)
T ss_pred ecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEEEEEEccCCCCC----------cccCccchhheeehh--------
Confidence 7788888888664433332221111222332211 222222111100 00000 00011100
Q ss_pred cCCceEEEEeCchhHhHHHHHhccCHHHHHHhhhcCcccchhHHHHHHhCCChhhhhccc-cCcchhhhHHhhcCCHHHH
Q 000936 585 RDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFV-KDERTRFNLALESGNIQIA 663 (1219)
Q Consensus 585 ~~~~~~~~~ld~~e~~f~~~l~~~~~~~a~~~i~~~~~~~~~i~~~l~~~g~~e~Al~~~-~d~~~rf~lal~~g~~~~A 663 (1219)
.+...-..+... ++.+.+++-.... ..-++..-|. -.++. ++..++.++..+..-++.|
T Consensus 294 --------d~~n~~v~ys~v-----l~~l~d~l~~w~~----~~~vltsdg~---~~~L~ek~le~kL~iL~kK~ly~~A 353 (933)
T KOG2114|consen 294 --------DLRNRYVLYSSV-----LEDLSDNLIEWSF----DCLVLTSDGV---VHELIEKDLETKLDILFKKNLYKVA 353 (933)
T ss_pred --------hhcCcccchHHh-----HHHHHHHHHhcCC----cEEEEecCCc---eeeeeeccHHHHHHHHHHhhhHHHH
Confidence 000000000000 1111111111100 0000000010 01111 2344577888888999999
Q ss_pred HHHHHHhCC-----hhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHHHHH--------HcCC
Q 000936 664 VASAKEIDE-----KDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAE--------VKND 730 (1219)
Q Consensus 664 ~~~a~~l~~-----~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~~~--------~~~~ 730 (1219)
+.+||.... .++.+..|.+.-.+|+++.|..-|.++=.+-.-+++-..=-+.++++.|..-.+ .+..
T Consensus 354 i~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dh 433 (933)
T KOG2114|consen 354 INLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDH 433 (933)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchh
Confidence 999998655 457788899999999999999999998665555555444445555554433221 1222
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHcC------CChHHHHHHHhcCChHHHHHHHHHcCCCC
Q 000936 731 VMGQFHNALYLGDVKERVKILESAG------HLPLAYITASVHGLQDVAERLAAELGDNV 784 (1219)
Q Consensus 731 ~~~~~~~al~lgd~~eai~i~~~~g------~~~~A~~la~~~g~~~~a~~l~~~~~~~~ 784 (1219)
......+|.+++|.+.--++-.... +.+.|+++-++.+..++|.-||..++..|
T Consensus 434 ttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he 493 (933)
T KOG2114|consen 434 TTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHE 493 (933)
T ss_pred HHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCH
Confidence 3455667999999999887777777 68999999999999999999999988654
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.76 E-value=4.1e-08 Score=112.86 Aligned_cols=241 Identities=17% Similarity=0.335 Sum_probs=167.3
Q ss_pred EEEEEEeC--CCCEEEEEECCCeEEEEECCC---CeEEEEecccCCCEEEEEEecCCC-EEEEEECCCeEEEEEcCCC-e
Q 000936 12 VKGLSFHS--KRPWILASLHSGVIQLWDYRM---GTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMH-R 84 (1219)
Q Consensus 12 V~~i~fsp--dg~~Lasg~~dg~I~iWd~~~---g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~-~ 84 (1219)
|-.+.||| ..++-++...+..-.+|++.. ...-..+.+|...|+.+-|+|+.+ .+++++-|..+..||+++. .
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 55667766 345555666666677899753 344556689999999999999776 7899999999999999864 4
Q ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEecCC-CEEEEEECCCeEEEE
Q 000936 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVW 162 (1219)
Q Consensus 85 ~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~-~~i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~vw 162 (1219)
++.....-......+.|+...+.+.+.+....|++||.+.| .++..+++|...|..+.|+..- ..+.+++.||+|+.|
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 55555544556788999988887777788889999999855 5678889999999999987533 578899999999999
Q ss_pred ECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEe--CCCeEE---------EE
Q 000936 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVK---------LW 231 (1219)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~--~dg~I~---------iw 231 (1219)
|......... .......+|....+.|-|.-.++-- .+..+. .|
T Consensus 230 ~y~kSt~e~~--------------------------~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~ 283 (1081)
T KOG0309|consen 230 DYSKSTTESK--------------------------RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEW 283 (1081)
T ss_pred cccccccccc--------------------------eeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhh
Confidence 9865322110 0111233444444544333222111 111233 33
Q ss_pred ECCCCCeeeEEeecCCCCCeEEEEEccCCC----------EEEEEeCCCcEEEEeCCC
Q 000936 232 RMNETKAWEVDTLRGHMNNVSCVMFHAKQD----------IIVSNSEDKSIRVWDVTK 279 (1219)
Q Consensus 232 d~~~~~~~~~~~~~~h~~~I~~l~~sp~g~----------~L~s~s~dg~I~iwdl~~ 279 (1219)
+..+.. .++..+.||...|....|-..+. .|++=+.|.++++|-+.+
T Consensus 284 n~~~~~-~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 284 NVFDLN-TPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccccCC-cceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 333322 24899999999988777754332 699999999999998764
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.72 E-value=3.8e-05 Score=84.59 Aligned_cols=217 Identities=13% Similarity=0.023 Sum_probs=145.8
Q ss_pred EEEEec-CCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEc-CCCCEEEEEECCCeEEEEECCCCeEEEEEec
Q 000936 56 GVHFHK-SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFH-HEYPWIVSASDDQTIRIWNWQSRTCISVLTG 133 (1219)
Q Consensus 56 ~l~fsp-~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs-~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~ 133 (1219)
++.|.+ ++.++++-...+.|..|+..++.....-. .. ...+.+. +++ .++.+..++ +.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 678998 67677777678999999998876544222 22 6777888 564 556656544 56669998865544432
Q ss_pred -----CCCCeEEEEEecCCCEEEEEECC--------CeEEEEECCCCccccccCCccceeeccccccccccccceEEEEE
Q 000936 134 -----HNHYVMCASFHPKEDLVVSASLD--------QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1219)
Q Consensus 134 -----h~~~V~~l~~sp~~~~l~s~s~d--------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1219)
.....+.+++.|+|++.++.... |.|..++.. ++ +. ..
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---------------------------~~-~~ 129 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK---------------------------VT-VV 129 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---------------------------EE-EE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---------------------------EE-EE
Confidence 34567889999999977776543 445556654 11 11 22
Q ss_pred eecCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCe--ee---EEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000936 201 EGHDRGVNWAAFHPTLPLIV-SGADDRQVKLWRMNETKA--WE---VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRV 274 (1219)
Q Consensus 201 ~~~~~~V~~l~~sp~g~~l~-sg~~dg~I~iwd~~~~~~--~~---~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~i 274 (1219)
...-...+.++|+|+++.|+ +-+..+.|..+++..... .. ...+....+....+++..+|++.++....+.|.+
T Consensus 130 ~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~ 209 (246)
T PF08450_consen 130 ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVV 209 (246)
T ss_dssp EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEE
T ss_pred ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEE
Confidence 22345678999999998765 556778899998864322 11 2222333334789999999998888888899999
Q ss_pred EeCCCCeeEEEEecCCCCEEEEEEe-CCCCEEEE
Q 000936 275 WDVTKRTGVQTFRREHDRFWILASH-PEMNLLAA 307 (1219)
Q Consensus 275 wdl~~~~~~~~~~~~~~~i~~l~~s-p~~~~la~ 307 (1219)
++.. ++.+..+......+++++|. ++.+.|.+
T Consensus 210 ~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 210 FDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred ECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 9976 88888888776789999994 56555544
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.71 E-value=4e-05 Score=84.44 Aligned_cols=224 Identities=12% Similarity=0.067 Sum_probs=145.3
Q ss_pred EEEEeC-CCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEe-cCCCEEEEEECCCeEEEEEcCCCeEEEEEcc
Q 000936 14 GLSFHS-KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH-KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91 (1219)
Q Consensus 14 ~i~fsp-dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fs-p~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~ 91 (1219)
+++|.+ ++.++++-...+.|..|+..+++... +.... ..++++. +++ .|+.+... .+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeec
Confidence 678998 66666666678999999988776543 32222 6788888 565 55555554 456669988855443332
Q ss_pred -----CCCCEEEEEEcCCCCEEEEEECC--------CeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEE-EEECCC
Q 000936 92 -----HLDYIRTVQFHHEYPWIVSASDD--------QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVV-SASLDQ 157 (1219)
Q Consensus 92 -----h~~~I~~l~fs~d~~~l~s~s~D--------g~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg 157 (1219)
.......+++.++|+..++.... |.|..++.. ++...... .-.....++|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 34567889999999977766543 567888877 55444443 345678999999998665 566778
Q ss_pred eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 000936 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (1219)
Q Consensus 158 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~ 237 (1219)
.|..+++........ .......+....+..-.+++..+|++.++....+.|.+++.. ++
T Consensus 157 ~i~~~~~~~~~~~~~--------------------~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 157 RIWRFDLDADGGELS--------------------NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK 215 (246)
T ss_dssp EEEEEEEETTTCCEE--------------------EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC
T ss_pred eeEEEecccccccee--------------------eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc
Confidence 899998864221000 000111122222347789999999998888889999999988 55
Q ss_pred eeeEEeecCCCCCeEEEEEc-cCCCEEEEEe
Q 000936 238 AWEVDTLRGHMNNVSCVMFH-AKQDIIVSNS 267 (1219)
Q Consensus 238 ~~~~~~~~~h~~~I~~l~~s-p~g~~L~s~s 267 (1219)
. +..+......+++++|. ++.+.|+..+
T Consensus 216 ~--~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 L--LREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp E--EEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred E--EEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 5 34444334589999994 6666655543
No 303
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.71 E-value=1.7e-07 Score=102.06 Aligned_cols=159 Identities=22% Similarity=0.325 Sum_probs=117.0
Q ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEECCCCe----EEEEecc--cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe
Q 000936 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGT----LIDRFDE--HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (1219)
Q Consensus 11 ~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~----~i~~l~~--h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~ 84 (1219)
.+..+..+|++++||++..+....++++.... ++..... ....++.+..+.........++.+.+.+|+...+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 44566788999999999888887777775433 2333322 22233333333333333445677888888877644
Q ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-ecCCCCeEEEEEecCCCEEEEEECCCeEEEEE
Q 000936 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-TGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163 (1219)
Q Consensus 85 ~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~-~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd 163 (1219)
+ ..+.||-..+..++|+||+++|+++..|..|+|-....-..+..+ -||...|..++..++ ..|+++|.|++|++||
T Consensus 144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 4 345679999999999999999999999999999887765555554 579999999999865 4699999999999999
Q ss_pred CCCCcccc
Q 000936 164 IGALRKKT 171 (1219)
Q Consensus 164 ~~~~~~~~ 171 (1219)
+.+++...
T Consensus 222 ~~sgk~L~ 229 (390)
T KOG3914|consen 222 ITSGKLLD 229 (390)
T ss_pred cccCCccc
Confidence 99987653
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=1.4e-08 Score=118.32 Aligned_cols=259 Identities=15% Similarity=0.257 Sum_probs=175.3
Q ss_pred ceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECC--CeEEEEEc
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD--YKIKVWNY 80 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D--g~I~vWd~ 80 (1219)
+.|..|+...+|++|+-+.++|++|+..|.|+++++.+|........|.++|+.+.=+.+|..+.+.+.- -...+|+.
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 5678899999999999999999999999999999999999999999999999999999999977766543 35779998
Q ss_pred CC-CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-e---cCCCCeEEEEEecCCCEEEEEEC
Q 000936 81 KM-HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-T---GHNHYVMCASFHPKEDLVVSASL 155 (1219)
Q Consensus 81 ~~-~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~-~---~h~~~V~~l~~sp~~~~l~s~s~ 155 (1219)
.+ +...+++. .-.++.|+.....-+.|+......+||++++..+.++ + +.+..-.++.|+|+.++++ .
T Consensus 1175 ~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---n 1247 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---N 1247 (1516)
T ss_pred ccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---e
Confidence 63 44455554 3467888887665555666667999999998876653 2 1222236789999998777 3
Q ss_pred CCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000936 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (1219)
Q Consensus 156 dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~ 235 (1219)
|| .+||.+..+...... ... .--.-.|||.|..++.-+. |||+++
T Consensus 1248 dG--vLWDvR~~~aIh~FD---------------------------~ft-~~~~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFD---------------------------QFT-DYGGGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred Cc--eeeeeccHHHHhhhh---------------------------hhe-ecccccccCCCceEEeech-----hhhhHH
Confidence 55 479998754432111 000 0112368999998888764 999998
Q ss_pred CCeeeEEeecCCCCCeEEEEEccCCCEEEEEe--CC---------------CcEEEEeCCCCeeEEEEecCCCCEEEEEE
Q 000936 236 TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS--ED---------------KSIRVWDVTKRTGVQTFRREHDRFWILAS 298 (1219)
Q Consensus 236 ~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s--~d---------------g~I~iwdl~~~~~~~~~~~~~~~i~~l~~ 298 (1219)
-+. ++....- .-..+.|+..|..+...- .| ...|-++..+...+.++.. ...+..++.
T Consensus 1293 F~l--Lh~VP~L--dqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct 1367 (1516)
T KOG1832|consen 1293 FKL--LHSVPSL--DQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCT 1367 (1516)
T ss_pred HHH--HhcCccc--cceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhc
Confidence 775 4333322 234677887777655432 00 1233444444444444442 223445556
Q ss_pred eCCCCEEEEE
Q 000936 299 HPEMNLLAAG 308 (1219)
Q Consensus 299 sp~~~~la~g 308 (1219)
+|...++++-
T Consensus 1368 ~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1368 EPTDSFLGVI 1377 (1516)
T ss_pred CCccceEEEE
Confidence 6655555543
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=3.2e-07 Score=100.46 Aligned_cols=264 Identities=16% Similarity=0.140 Sum_probs=181.2
Q ss_pred ccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCC--C-eEEEEecccCCCEEEEEEecCCCEEEEEEC-CCeEEEEEcCC
Q 000936 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM--G-TLIDRFDEHDGPVRGVHFHKSQPLFVSGGD-DYKIKVWNYKM 82 (1219)
Q Consensus 7 ~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~--g-~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~-Dg~I~vWd~~~ 82 (1219)
-|.+.|+.+.-+ ..+++.+++.||.++.|.-.. | +.+..+..|-+.|.+++.+-++.++.|.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 377777777654 457899999999999998432 2 445666789999999999999999999888 99999999986
Q ss_pred CeEEEEEcc--CCCCEEEEEEcCCC---CEEEEEECCCeEEEEECCCCeE--EEEEecCCCCeEEEEEecCCCEEEEEEC
Q 000936 83 HRCLFTLLG--HLDYIRTVQFHHEY---PWIVSASDDQTIRIWNWQSRTC--ISVLTGHNHYVMCASFHPKEDLVVSASL 155 (1219)
Q Consensus 83 ~~~~~~l~~--h~~~I~~l~fs~d~---~~l~s~s~Dg~I~iwd~~s~~~--i~~~~~h~~~V~~l~~sp~~~~l~s~s~ 155 (1219)
-..+..++- -.+.+. ...++.. ..-++.-.++.+.|+|-....+ ...-.-|..+|.++.++|.++.+++...
T Consensus 86 ~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred cchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 554432221 112111 1122221 1223344578999999764432 3334569999999999999999999999
Q ss_pred CCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000936 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (1219)
Q Consensus 156 dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~ 235 (1219)
.|.|.-|.....-+. |.. ...++-....-.+.+........++.|+|+|..+.+-+.|..|++++..+
T Consensus 165 ~gmVEyWs~e~~~qf---Pr~---------~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQF---PRT---------NLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred cceeEeecCCCcccC---ccc---------cccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEecc
Confidence 999999998741110 000 00011111111222333456678999999999999999999999999988
Q ss_pred CCeeeEEee--------------------------------cCCC-CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 000936 236 TKAWEVDTL--------------------------------RGHM-NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG 282 (1219)
Q Consensus 236 ~~~~~~~~~--------------------------------~~h~-~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~ 282 (1219)
++.. ..+ ..|. ..-+.+.|...|++|+-++-=| |++.++.+++.
T Consensus 233 Gklv--qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 233 GKLV--QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred chhh--hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence 7652 111 1111 1235678888899999988776 89999999988
Q ss_pred EEEEe
Q 000936 283 VQTFR 287 (1219)
Q Consensus 283 ~~~~~ 287 (1219)
.+.+-
T Consensus 310 ~ri~g 314 (558)
T KOG0882|consen 310 VRILG 314 (558)
T ss_pred EEEec
Confidence 87764
No 306
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.66 E-value=4.3e-06 Score=96.30 Aligned_cols=75 Identities=13% Similarity=0.066 Sum_probs=56.5
Q ss_pred cCCceeEeeeCCcceEEEEEeCCCcEEEEeC--CeEEEEEcCCCeEEEEEecCCeeEEEEcCCCCEEEEEeCCeEEEEe
Q 000936 441 LKNEVVKKSILPIAADAIFYAGTGNLLCRAE--DRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIAS 517 (1219)
Q Consensus 441 l~~~~~~~i~~~~~v~~l~~s~dg~~L~s~d--~~I~l~dl~~~~~l~~~~~~~v~~v~ws~dg~~la~~s~~~i~i~~ 517 (1219)
+.+.....+.+.+.|..+..+..+..|+..| -.+.++|+++.+..-.+ .-++++.|-|-...++..+++++.||.
T Consensus 326 i~g~~~~~inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil--nfcsymqwvp~sdvivaqn~dnl~iwy 402 (1636)
T KOG3616|consen 326 IGGQNEGFINHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL--NFCSYMQWVPGSDVIVAQNGDNLCIWY 402 (1636)
T ss_pred ccCcccccccccccccceeccchhhhhhcccccceeEEEEcccchHHHHH--HHhhhheeccCcceEEecCCCceEEEe
Confidence 3444455566777888888888877777765 56888999886643333 347889999999999999999999885
No 307
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.61 E-value=7.2e-05 Score=88.23 Aligned_cols=264 Identities=9% Similarity=0.025 Sum_probs=154.7
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEE
Q 000936 63 QPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142 (1219)
Q Consensus 63 ~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~ 142 (1219)
+..+++++.++.+..+|..+|+.+............... ++..++.++.++.+..+|..+|+.+....... .+.+.-
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 567888888999999999999998876544332222322 45678888899999999999999887665322 222211
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEE
Q 000936 143 FHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG 222 (1219)
Q Consensus 143 ~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg 222 (1219)
.. .++.++.++.+|.|..||..+++..-...... ..........+ ... + ..++.+
T Consensus 142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~------------------~~~~~~~~~sp----~~~-~-~~v~~~ 196 (377)
T TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVT------------------PALTLRGSASP----VIA-D-GGVLVG 196 (377)
T ss_pred EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCC------------------CceeecCCCCC----EEE-C-CEEEEE
Confidence 11 24577788889999999998766432111000 00000000111 111 2 367777
Q ss_pred eCCCeEEEEECCCCCeeeEEeecC-CC-CC------e-EEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC--
Q 000936 223 ADDRQVKLWRMNETKAWEVDTLRG-HM-NN------V-SCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD-- 291 (1219)
Q Consensus 223 ~~dg~I~iwd~~~~~~~~~~~~~~-h~-~~------I-~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~-- 291 (1219)
..+|.+..+|..+++..-...... .. .. + ....+ .+..+++++.+|.+..||..+++.+........
T Consensus 197 ~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 274 (377)
T TIGR03300 197 FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQG 274 (377)
T ss_pred CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccC
Confidence 888999999988776411111110 00 00 0 11112 356788888899999999999987765542111
Q ss_pred CE----EEEEEeCCCCEEEEEeCCCeeEEEecC-Cc---ceEEecCCEEEEE-eCCeEEEEEecCCcceeeEee
Q 000936 292 RF----WILASHPEMNLLAAGHDSGMIVFKLER-ER---PAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPI 356 (1219)
Q Consensus 292 ~i----~~l~~sp~~~~la~g~d~gi~v~~l~~-~~---~~~s~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~ 356 (1219)
.. .....+.++.+.+.-...|-.+|+... .. ......++.+++. .++.+.++|..+++.+....+
T Consensus 275 p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 275 PAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred ceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 00 001112333333333334445565422 11 1223456777777 899999999999887655443
No 308
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.57 E-value=0.00092 Score=77.63 Aligned_cols=266 Identities=14% Similarity=0.139 Sum_probs=146.9
Q ss_pred EEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCCceeEeeeCCcceEEEEEeCCCcEEEEe
Q 000936 391 YELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRA 470 (1219)
Q Consensus 391 i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~i~~~~~v~~l~~s~dg~~L~s~ 470 (1219)
..+|++.......+....-.....+.+.+++|+...++.|..||.|.+||...+.....+....++.++|.|+|.+++.+
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEE
Confidence 34666665443322222334556788999999999999999999999999986666666666678899999999888664
Q ss_pred --CCeEEEEEcCCCeEEEEEec---CCeeEEEEcCCCCEEEEEeCCeEEEEecCccceeeeeeeeEEeeeEEecCCeEE-
Q 000936 471 --EDRVVIFDLQQRLVLGDLQT---PFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFI- 544 (1219)
Q Consensus 471 --d~~I~l~dl~~~~~l~~~~~---~~v~~v~ws~dg~~la~~s~~~i~i~~~~l~~~~~~~e~~~iks~~wd~~~~~i- 544 (1219)
.|.+.+||+.-+-.-..+.. .+-..+.++ +++ ..........|...+-+.
T Consensus 318 s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls---~yf---------------------~~~~~L~~iqW~~~~~~~~ 373 (545)
T PF11768_consen 318 SEQGELQCFDMALSPIKMQLLSEDATPKSTLQLS---KYF---------------------RVSSSLVHIQWAPAPQLSS 373 (545)
T ss_pred cCCceEEEEEeecCccceeeccccCCCccEEeee---hhc---------------------cCcchhheeEeccCCCccc
Confidence 48899999855432222211 111112221 000 000011122332111110
Q ss_pred EEcCCeeeEEecCCceeEEEeccccEEEEEEeCCEEEEEecCCceEEEEeCchhHhHHHHHhccCHHHHHHhhhcCcc--
Q 000936 545 YTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQL-- 622 (1219)
Q Consensus 545 y~t~~~iky~l~~g~~~~i~~~~~~~~l~~~~~~~l~~l~~~~~~~~~~ld~~e~~f~~~l~~~~~~~a~~~i~~~~~-- 622 (1219)
+.. ......+.-.+.-...|+-++++..+.. ..| .+.+.++.. ..+..+++++|.+++.+-+-
T Consensus 374 ~~~-----~~~~~~~~L~l~f~~GPl~vl~~~~G~~----~~G-----~l~~~eL~~-~yl~~~qi~eAi~lL~smnW~~ 438 (545)
T PF11768_consen 374 QGE-----FYADTYDLLLLVFERGPLAVLRFKLGVF----TRG-----DLGLVELIS-QYLRCDQIEEAINLLLSMNWNT 438 (545)
T ss_pred cCC-----CcCCccceEEEEEcCCCeEEEEEeeccc----cCC-----cccHHHHHH-HHHhcCCHHHHHHHHHhCCccc
Confidence 000 0000001111111112333333321110 011 233334433 46788999999988876431
Q ss_pred cc-------hhHHHHHHhCCCh-------hhhh-ccc--cCc-----------------chhhhHHhhcCCHHHHHHHHH
Q 000936 623 CG-------QAMIAYLQQKGFP-------EVAL-HFV--KDE-----------------RTRFNLALESGNIQIAVASAK 668 (1219)
Q Consensus 623 ~~-------~~i~~~l~~~g~~-------e~Al-~~~--~d~-----------------~~rf~lal~~g~~~~A~~~a~ 668 (1219)
.| ..|..||-++-+. |.|+ .|+ ..| +.=|...+..++++.|+..|.
T Consensus 439 ~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d~V~~~aRRfFhhLLR~~rfekAFlLAv 518 (545)
T PF11768_consen 439 MGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRDPVSDLARRFFHHLLRYQRFEKAFLLAV 518 (545)
T ss_pred cHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 12 2566677665432 2222 111 111 112566677899999999999
Q ss_pred HhCChhHHHHHHHHHHHcCChhHHHHH
Q 000936 669 EIDEKDHWYRLGVEALRQGNAGIVEYA 695 (1219)
Q Consensus 669 ~l~~~~~w~~La~~al~~g~~~~Ae~~ 695 (1219)
.+++.+++-.+-..|...|+...|+.|
T Consensus 519 di~~~DLFmdlh~~A~~~ge~~La~~A 545 (545)
T PF11768_consen 519 DIGDRDLFMDLHYLAKDKGELALAEVA 545 (545)
T ss_pred hccchHHHHHHHHHHHhccchhhhhcC
Confidence 999999999999999999998888753
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.56 E-value=4.3e-05 Score=83.72 Aligned_cols=231 Identities=10% Similarity=0.014 Sum_probs=142.1
Q ss_pred CCCeEEEEECCCCeEEEEeccc--CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCC
Q 000936 29 HSGVIQLWDYRMGTLIDRFDEH--DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP 106 (1219)
Q Consensus 29 ~dg~I~iWd~~~g~~i~~l~~h--~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~ 106 (1219)
.+|+|..||..+|+.+.+..-- .....+. ..+++..+++++.++.+..||..+|+.+.+... ...+.... ...+.
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 3789999999999999888531 1222211 334566788888999999999999999988764 22222112 22345
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEE-ecCC---CCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeec
Q 000936 107 WIVSASDDQTIRIWNWQSRTCISVL-TGHN---HYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLS 182 (1219)
Q Consensus 107 ~l~s~s~Dg~I~iwd~~s~~~i~~~-~~h~---~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~ 182 (1219)
.+++++.++.++.+|..+|+.+... .... ...........++.++++..++.|..+|..+++..-..+....
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~---- 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP---- 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT----
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC----
Confidence 6777778889999999999998884 3221 1122333333478899999899999999998765322110000
Q ss_pred cccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCE
Q 000936 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDI 262 (1219)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~ 262 (1219)
.... ... ....+..-....++ .++.++.++.+.-+|..+++. +-... ...+.. ....++..
T Consensus 154 ----------~~~~--~~~-~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~--~w~~~--~~~~~~-~~~~~~~~ 214 (238)
T PF13360_consen 154 ----------RGSS--PIS-SFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEK--LWSKP--ISGIYS-LPSVDGGT 214 (238)
T ss_dssp -----------SS----EE-EETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEE--EEEEC--SS-ECE-CEECCCTE
T ss_pred ----------CCCc--cee-eecccccceEEECC-EEEEEcCCCeEEEEECCCCCE--EEEec--CCCccC-CceeeCCE
Confidence 0000 000 01112222222344 666677677533349998874 21222 222222 13467788
Q ss_pred EEEEeCCCcEEEEeCCCCeeEEE
Q 000936 263 IVSNSEDKSIRVWDVTKRTGVQT 285 (1219)
Q Consensus 263 L~s~s~dg~I~iwdl~~~~~~~~ 285 (1219)
|++++.++.+..||+.+++.+.+
T Consensus 215 l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 215 LYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEEeCCCEEEEEECCCCCEEeE
Confidence 88888999999999999987643
No 310
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=6.4e-08 Score=113.07 Aligned_cols=224 Identities=14% Similarity=0.162 Sum_probs=160.9
Q ss_pred eEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECC-C-eEEE
Q 000936 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-Q-TIRI 119 (1219)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~D-g-~I~i 119 (1219)
+...+|..|+...+|++|+-+.+.|++|+..|.|+++++.+|........|...|+.+.-+.+|..+++.+.- . ...+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 3456677899999999999999999999999999999999999999999999999999999999876665443 3 4678
Q ss_pred EECCC-CeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEE
Q 000936 120 WNWQS-RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1219)
Q Consensus 120 wd~~s-~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1219)
|+..+ +...+++.. -.++.|+.....-+.|+......+||+.++......-.
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt----------------------- 1224 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT----------------------- 1224 (1516)
T ss_pred hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC-----------------------
Confidence 98763 444555543 34677876554455566667789999998665432100
Q ss_pred EEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000936 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1219)
Q Consensus 199 ~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~ 278 (1219)
-..+....-+++.|+|+..+++ .|| .+||++.... ++.+...+..+ .-.|||+|.-++..++ |||++
T Consensus 1225 ~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~a--Ih~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~R 1291 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEA--IHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMR 1291 (1516)
T ss_pred cchhhhhhccccccCCCcceEe---eCc--eeeeeccHHH--Hhhhhhheecc-cccccCCCceEEeech-----hhhhH
Confidence 0011122237789999987766 355 4899988765 66665544333 3379999999998876 99999
Q ss_pred CCeeEEEEecCCCCEEEEEEeCCCCEEEE
Q 000936 279 KRTGVQTFRREHDRFWILASHPEMNLLAA 307 (1219)
Q Consensus 279 ~~~~~~~~~~~~~~i~~l~~sp~~~~la~ 307 (1219)
+.+.++....-.. ..+.|+..|..+.+
T Consensus 1292 TF~lLh~VP~Ldq--c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1292 TFKLLHSVPSLDQ--CAVTFNSTGDVMYA 1318 (1516)
T ss_pred HHHHHhcCccccc--eEEEeccCccchhh
Confidence 9887776553322 45667777765443
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.54 E-value=5.4e-05 Score=82.49 Aligned_cols=253 Identities=15% Similarity=0.136 Sum_probs=153.3
Q ss_pred EEEEEcCC-CCEEEEEeCCC-eEEEEECCCCCeeeEEeecCCCCC--eEEEEEccCCCEEEEEe-----CCCcEEEEeCC
Q 000936 208 NWAAFHPT-LPLIVSGADDR-QVKLWRMNETKAWEVDTLRGHMNN--VSCVMFHAKQDIIVSNS-----EDKSIRVWDVT 278 (1219)
Q Consensus 208 ~~l~~sp~-g~~l~sg~~dg-~I~iwd~~~~~~~~~~~~~~h~~~--I~~l~~sp~g~~L~s~s-----~dg~I~iwdl~ 278 (1219)
..++.+|+ ...++.+-.-| ...+||..+++. ...+....+. -=.-.||+||++|++.- ..|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~--~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQL--LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCce--eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 45778884 44555555555 467889888876 3333222221 12358999999999863 35789999998
Q ss_pred -CCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCee--------EEEecCCcceEEecCCEEEEEeCCeEEEEEecCCc
Q 000936 279 -KRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI--------VFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQK 349 (1219)
Q Consensus 279 -~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~--------v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~ 349 (1219)
+...+.++..+.-....+.+.||+..|+++.. |+. ..++++ .+.++...|..+|+
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG-GI~Thpd~GR~kLNl~t---------------M~psL~~ld~~sG~ 149 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANG-GIETHPDSGRAKLNLDT---------------MQPSLVYLDARSGA 149 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC-CCccCcccCceecChhh---------------cCCceEEEecCCCc
Confidence 66778888887777788999999988877653 221 112221 34556666777777
Q ss_pred ceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEE
Q 000936 350 DTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVL 429 (1219)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~ 429 (1219)
.+....+...-+ ...++.++++++|..+ .+.. | ... .... --+++.
T Consensus 150 ll~q~~Lp~~~~---~lSiRHLa~~~~G~V~--~a~Q-------~--qg~------------~~~~--------~PLva~ 195 (305)
T PF07433_consen 150 LLEQVELPPDLH---QLSIRHLAVDGDGTVA--FAMQ-------Y--QGD------------PGDA--------PPLVAL 195 (305)
T ss_pred eeeeeecCcccc---ccceeeEEecCCCcEE--EEEe-------c--CCC------------CCcc--------CCeEEE
Confidence 666555543222 2278889999987732 2220 0 000 0000 012222
Q ss_pred EcCCCEEEEEecCCceeEeeeCCcceEEEEEeCCCcEEEEe---CCeEEEEEcCCCeEEEEEecCCeeEEEEcCCCCEEE
Q 000936 430 DKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRA---EDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVA 506 (1219)
Q Consensus 430 ~~~dg~I~Iwdl~~~~~~~i~~~~~v~~l~~s~dg~~L~s~---d~~I~l~dl~~~~~l~~~~~~~v~~v~ws~dg~~la 506 (1219)
-..++.+............+ ...+-+|+++++|.+++.+ .+.+.+||..+++.+.......+-.++..+++ +++
T Consensus 196 ~~~g~~~~~~~~p~~~~~~l--~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ 272 (305)
T PF07433_consen 196 HRRGGALRLLPAPEEQWRRL--NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLV 272 (305)
T ss_pred EcCCCcceeccCChHHHHhh--CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEE
Confidence 22233344444432222222 2367888888888777543 58888999999998888887777777777777 555
Q ss_pred EEeCCeEEE
Q 000936 507 LLSKHAIII 515 (1219)
Q Consensus 507 ~~s~~~i~i 515 (1219)
+.....++.
T Consensus 273 ssG~G~~~~ 281 (305)
T PF07433_consen 273 SSGQGQLIR 281 (305)
T ss_pred eCCCccEEE
Confidence 544444443
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.51 E-value=7.9e-05 Score=81.21 Aligned_cols=236 Identities=13% Similarity=0.123 Sum_probs=156.3
Q ss_pred CCEEEEEEeC-CCCEEEEEECCCe-EEEEECCCCeEEEEecccCCCE--EEEEEecCCCEEEEEEC-----CCeEEEEEc
Q 000936 10 NRVKGLSFHS-KRPWILASLHSGV-IQLWDYRMGTLIDRFDEHDGPV--RGVHFHKSQPLFVSGGD-----DYKIKVWNY 80 (1219)
Q Consensus 10 ~~V~~i~fsp-dg~~Lasg~~dg~-I~iWd~~~g~~i~~l~~h~~~V--~~l~fsp~~~~Lasgs~-----Dg~I~vWd~ 80 (1219)
.+...++.+| ++..++.+-.-|+ ..+||..+|+....+....+.- -.-.||+||++|.+.-. .|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 4567889999 5556666766665 7899999999988876544332 24679999999998743 489999999
Q ss_pred C-CCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC------------------CCeEEEEECCCCeEEEEEe----cCCCC
Q 000936 81 K-MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD------------------DQTIRIWNWQSRTCISVLT----GHNHY 137 (1219)
Q Consensus 81 ~-~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~------------------Dg~I~iwd~~s~~~i~~~~----~h~~~ 137 (1219)
. +-+.+.++..|.-.-..+.+.||++.|+++.. +-.+...|..+|+.+.... .|...
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 8 67888889888877888999999988877632 2345666777888777633 37778
Q ss_pred eEEEEEecCCCEEEEEECCCe-------EEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEE
Q 000936 138 VMCASFHPKEDLVVSASLDQT-------VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210 (1219)
Q Consensus 138 V~~l~~sp~~~~l~s~s~dg~-------I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 210 (1219)
+..+++.++|..++..-..|. |-+++-... . ..+...+ -....-...+-++
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~----------------~~~~~p~----~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--L----------------RLLPAPE----EQWRRLNGYIGSI 222 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--c----------------eeccCCh----HHHHhhCCceEEE
Confidence 999999988865554433331 222222110 0 0000000 0112335678899
Q ss_pred EEcCCCCEEE-EEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000936 211 AFHPTLPLIV-SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIR 273 (1219)
Q Consensus 211 ~~sp~g~~l~-sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~ 273 (1219)
++++++..++ |+-..+.+.+||..++... .... -..+..++-.+++ ++++.+ .|.+.
T Consensus 223 a~~~~g~~ia~tsPrGg~~~~~d~~tg~~~--~~~~--l~D~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 223 AADRDGRLIAVTSPRGGRVAVWDAATGRLL--GSVP--LPDACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred EEeCCCCEEEEECCCCCEEEEEECCCCCEe--eccc--cCceeeeeecCCc-eEEeCC-CccEE
Confidence 9999998775 4556789999999999862 2222 2345667766666 444444 45433
No 313
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.51 E-value=9e-07 Score=96.50 Aligned_cols=156 Identities=20% Similarity=0.284 Sum_probs=111.3
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEEcCCCe----EEEEEccCCCCEEEEEEcCCCCEEE---EEECCCeEEEEECCCCe
Q 000936 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR----CLFTLLGHLDYIRTVQFHHEYPWIV---SASDDQTIRIWNWQSRT 126 (1219)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~----~~~~l~~h~~~I~~l~fs~d~~~l~---s~s~Dg~I~iwd~~s~~ 126 (1219)
...+..++.++++|++..+....++++.... ++.... -...-+++.|..+..... .+++...+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 4556678899999999888887777775433 222222 122234444444444333 34555667777766543
Q ss_pred EEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCC
Q 000936 127 CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206 (1219)
Q Consensus 127 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (1219)
+ ..+-||-+.++.++|+||+.+|+++..|..||+-....... +.....||..-
T Consensus 144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~--------------------------IesfclGH~eF 196 (390)
T KOG3914|consen 144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV--------------------------IESFCLGHKEF 196 (390)
T ss_pred c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc--------------------------hhhhccccHhh
Confidence 3 44557999999999999999999999999999987654221 12245689999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 000936 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1219)
Q Consensus 207 V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~ 238 (1219)
|..++.-++. .|++++.|++|++||+.+++.
T Consensus 197 VS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 197 VSTISLTDNY-LLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred eeeeeeccCc-eeeecCCCCcEEEEecccCCc
Confidence 9999998874 599999999999999999987
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=2.3e-06 Score=100.68 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=112.6
Q ss_pred CCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 000936 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1219)
Q Consensus 10 ~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1219)
+.++|+++| ++.++.|+++|.|++.+. .|.. .+...|... ..+|.+++||+.||+|.|-.+.+.+...++
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~-~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTC-QGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEec-CCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 456777777 678999999999999995 4444 333345544 668999999999999999999887776666
Q ss_pred ccCCCCEEEEEEcCC-----CCEEEEEECCCeEEEEEC--CCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEE
Q 000936 90 LGHLDYIRTVQFHHE-----YPWIVSASDDQTIRIWNW--QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1219)
Q Consensus 90 ~~h~~~I~~l~fs~d-----~~~l~s~s~Dg~I~iwd~--~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vw 162 (1219)
. -..++.+++++|+ .+.+++|+.-| +.++.- -..+....+....++|.++.|. |++++-++.+| |+||
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy 184 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY 184 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence 5 3568999999998 45899999888 766642 1222222456667899999997 88999998766 8999
Q ss_pred ECCCCccccc
Q 000936 163 DIGALRKKTV 172 (1219)
Q Consensus 163 d~~~~~~~~~ 172 (1219)
|..+.+....
T Consensus 185 d~~~~~~l~~ 194 (846)
T KOG2066|consen 185 DTPTRQRLTN 194 (846)
T ss_pred eccccceeec
Confidence 9988766543
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.3e-06 Score=95.92 Aligned_cols=212 Identities=15% Similarity=0.108 Sum_probs=150.4
Q ss_pred ccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC--C-eEEEEEccCCCCEEEEEEcCCCCEEEEEEC-CCeEEEEECCC
Q 000936 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM--H-RCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQTIRIWNWQS 124 (1219)
Q Consensus 49 ~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~--~-~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~-Dg~I~iwd~~s 124 (1219)
-|...|+.+.-+ -.+++.+++-||.++.|--.. + +.+..+..|...|.+++.+-++..+.|.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 477777776544 445899999999999997542 1 334455678899999999999988888787 99999999987
Q ss_pred CeEEEEEecCCCCeEEEEE-ecCC----CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEE
Q 000936 125 RTCISVLTGHNHYVMCASF-HPKE----DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV 199 (1219)
Q Consensus 125 ~~~i~~~~~h~~~V~~l~~-sp~~----~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1219)
-..+..++-..-+ ..+.| ...| ..-++.-.+|.+.++|-...-.. ..+.
T Consensus 86 ~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-------------------------~~~f 139 (558)
T KOG0882|consen 86 FDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-------------------------DGYF 139 (558)
T ss_pred cchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc-------------------------ccee
Confidence 6655433321111 11222 2223 22233345788999997653211 2334
Q ss_pred EeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----C--eee------EEeecCCCCCeEEEEEccCCCEEEEE
Q 000936 200 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-----K--AWE------VDTLRGHMNNVSCVMFHAKQDIIVSN 266 (1219)
Q Consensus 200 ~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~-----~--~~~------~~~~~~h~~~I~~l~~sp~g~~L~s~ 266 (1219)
-.-|..+|..+.+++.+..+++....|.|.-|..... . .+. +..+.......+++.|+|+|..+.+-
T Consensus 140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl 219 (558)
T KOG0882|consen 140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL 219 (558)
T ss_pred cccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence 4568999999999999999999999999999987731 0 010 11122334567899999999999999
Q ss_pred eCCCcEEEEeCCCCeeEEEEe
Q 000936 267 SEDKSIRVWDVTKRTGVQTFR 287 (1219)
Q Consensus 267 s~dg~I~iwdl~~~~~~~~~~ 287 (1219)
+.|..|++++..+++.++.+.
T Consensus 220 ~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 220 NPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred CcccEEEEEEeccchhhhhhh
Confidence 999999999999988766654
No 316
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.48 E-value=2.2e-06 Score=89.57 Aligned_cols=265 Identities=11% Similarity=0.191 Sum_probs=149.5
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee---EEeecCCC------------CCeEEEEEccCC--CEEEE
Q 000936 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE---VDTLRGHM------------NNVSCVMFHAKQ--DIIVS 265 (1219)
Q Consensus 203 ~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~---~~~~~~h~------------~~I~~l~~sp~g--~~L~s 265 (1219)
....|+++.|...|.++++|...|.|.+|.-......+ ...+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34568999999999999999999999999866544211 23345553 246677776544 45777
Q ss_pred EeCCCcEEEEeCCCCeeEEE--------EecC-CCCEEEE------EEeCCCCEEEEEeCCCee--EEEecCCcceEEec
Q 000936 266 NSEDKSIRVWDVTKRTGVQT--------FRRE-HDRFWIL------ASHPEMNLLAAGHDSGMI--VFKLERERPAFAVS 328 (1219)
Q Consensus 266 ~s~dg~I~iwdl~~~~~~~~--------~~~~-~~~i~~l------~~sp~~~~la~g~d~gi~--v~~l~~~~~~~s~~ 328 (1219)
.+.|.+|++|.+........ +... .+++++. ..+....+++ .....+. .....-....+..+
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iia-a~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIA-AKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEE-eccceeccccceeEeeeeeecCc
Confidence 78899999999865421100 0000 1111110 0111111111 1111110 00000001122233
Q ss_pred CCEEEEEeCCeEEEEEecC-CcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCC-----C
Q 000936 329 GDSLFYAKDRFLRYYEFST-QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI-----G 402 (1219)
Q Consensus 329 ~~~l~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~-----~ 402 (1219)
...++.+.+-.|.+|++.. .....+..++......+..-|++..|+|....++..+. ..|.|++-++..... .
T Consensus 184 ~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs-SkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS-SKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec-CCCcEEehhhhhhhhccCchh
Confidence 4455555777788887765 22333344433221111226788899998766655444 568999998863221 1
Q ss_pred CC--------ccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC--CceeEeeeCCc----------------ceE
Q 000936 403 RG--------DSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK--NEVVKKSILPI----------------AAD 456 (1219)
Q Consensus 403 ~~--------~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~--~~~~~~i~~~~----------------~v~ 456 (1219)
.. ...+......|..+.|+++||++++-+ --+|+|||.. ..+++++..|. .--
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 00 011223334678899999999999877 5789999998 56788886553 123
Q ss_pred EEEEeCCCcEEEEe
Q 000936 457 AIFYAGTGNLLCRA 470 (1219)
Q Consensus 457 ~l~~s~dg~~L~s~ 470 (1219)
.+.||+|.+.+.++
T Consensus 342 eisfSgd~~~v~sg 355 (460)
T COG5170 342 EISFSGDDKHVLSG 355 (460)
T ss_pred EEEecCCccccccc
Confidence 45677776666664
No 317
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.40 E-value=0.00013 Score=86.57 Aligned_cols=260 Identities=8% Similarity=-0.041 Sum_probs=141.6
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEecccCC--CEE-----EEEEec--CCCEEEEEECCCeEEEEEcCCCeEEEEEc
Q 000936 20 KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDG--PVR-----GVHFHK--SQPLFVSGGDDYKIKVWNYKMHRCLFTLL 90 (1219)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~--~V~-----~l~fsp--~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~ 90 (1219)
.+..+.+++.+|.+.-+|..+|+.+.+.+.... ... .+.-.| .+..++.++.++.+..+|.++|+.+.+..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 356778888899999999999998877643220 000 000011 34567778889999999999999888775
Q ss_pred cCCCCEEE-EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCe-----EEEEEecCCCEEEEEECCCeEEEEEC
Q 000936 91 GHLDYIRT-VQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYV-----MCASFHPKEDLVVSASLDQTVRVWDI 164 (1219)
Q Consensus 91 ~h~~~I~~-l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V-----~~l~~sp~~~~l~s~s~dg~I~vwd~ 164 (1219)
... .+.+ .... +..++.++.++.+..+|..+|+.+.........+ .+... .+..++.++.+|.+..+|.
T Consensus 148 ~~~-~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 148 VAG-EALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred CCC-ceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 432 2221 1121 3467778889999999999999888775321110 01111 1345777888999998888
Q ss_pred CCCccccccCCccce------------e--eccccccccccccceEEEEEeecCCCeEEE-E------EcCCCCEEEEEe
Q 000936 165 GALRKKTVSPADDIL------------R--LSQMNTDLFGGVDAVVKYVLEGHDRGVNWA-A------FHPTLPLIVSGA 223 (1219)
Q Consensus 165 ~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l-~------~sp~g~~l~sg~ 223 (1219)
.+++..-..+..... . ....+.......++ ....+...++.+.+- . ....+..++.++
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g-~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~ 301 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG-NLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVD 301 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCC-eEEEEECCCCCEEEeecCCCccCcEEECCEEEEEc
Confidence 876643221100000 0 00000000011111 111111112211110 0 011234566677
Q ss_pred CCCeEEEEECCCCCe-eeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC
Q 000936 224 DDRQVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE 289 (1219)
Q Consensus 224 ~dg~I~iwd~~~~~~-~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~ 289 (1219)
.+|.+..+|..+++. |...... + ....+... .+..|+.++.+|.+.+.|..+++.+...+..
T Consensus 302 ~~g~l~ald~~tG~~~W~~~~~~-~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 302 QNDRVYALDTRGGVELWSQSDLL-H-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred CCCeEEEEECCCCcEEEcccccC-C-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 778888888877653 1111111 1 11111122 2456777778888888888888777666543
No 318
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.40 E-value=0.00022 Score=75.39 Aligned_cols=217 Identities=15% Similarity=0.191 Sum_probs=119.6
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCC--eEEEEE---ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000936 57 VHFHKSQPLFVSGGDDYKIKVWNYKMH--RCLFTL---LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131 (1219)
Q Consensus 57 l~fsp~~~~Lasgs~Dg~I~vWd~~~~--~~~~~l---~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~ 131 (1219)
++.+++|++||+..+ ..|.+=..++. ..+... +.....-+.++||||+..||.+...|+|+++|+... .+..+
T Consensus 3 ~~~~~~Gk~lAi~qd-~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQD-QCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVI 80 (282)
T ss_pred eeecCCCcEEEEEec-cEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEc
Confidence 556788887777654 46666554331 122222 222335688999999999999999999999998753 33333
Q ss_pred ec-------CCCCeEEEEEecCC------CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEE
Q 000936 132 TG-------HNHYVMCASFHPKE------DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1219)
Q Consensus 132 ~~-------h~~~V~~l~~sp~~------~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1219)
.. -...|..+.|.+.. ..|++...+|.++-|-+..+..... .....+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y--------------------~e~hsf 140 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGY--------------------QENHSF 140 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcc--------------------eeeEEE
Confidence 22 12456666665432 2455666678887777643211110 011122
Q ss_pred EEee-cCCCeEEEEEcCCCCEEEEEeCCCe-----------EEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEE
Q 000936 199 VLEG-HDRGVNWAAFHPTLPLIVSGADDRQ-----------VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266 (1219)
Q Consensus 199 ~~~~-~~~~V~~l~~sp~g~~l~sg~~dg~-----------I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~ 266 (1219)
.+.. +..+|+++.|+|..++|++|+.... +.-|++-++.+ |-..| .+.+...-...
T Consensus 141 sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P--------yyk~v----~~~~~~~~~~~ 208 (282)
T PF15492_consen 141 SFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP--------YYKQV----TSSEDDITASS 208 (282)
T ss_pred EecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCC--------cEEEc----cccCccccccc
Confidence 3333 4779999999999888887764322 22222222211 00000 01011111111
Q ss_pred eCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeC
Q 000936 267 SEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1219)
Q Consensus 267 s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d 310 (1219)
. +-.+|.+.+...........+.|..+..||||.+||+.+-
T Consensus 209 ~---~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~ 249 (282)
T PF15492_consen 209 K---RRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHF 249 (282)
T ss_pred c---ccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEc
Confidence 1 1233433332222222335677999999999999999884
No 319
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.30 E-value=0.0016 Score=73.33 Aligned_cols=334 Identities=14% Similarity=0.150 Sum_probs=144.0
Q ss_pred EECCCCeEEEEecccCCCEEE-----EEEecCCCEEEEEEC---CCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCE
Q 000936 36 WDYRMGTLIDRFDEHDGPVRG-----VHFHKSQPLFVSGGD---DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (1219)
Q Consensus 36 Wd~~~g~~i~~l~~h~~~V~~-----l~fsp~~~~Lasgs~---Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~ 107 (1219)
-|..||..+.++..+.+.-.. =+|.++|+.|+.+++ ...+.+.|+.+++..+--.+.........++++++.
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~ 94 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA 94 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence 366788888888654443332 356788987777665 456777788887765543332222335677888888
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecC--CCEEEEEECCCeEEEEECCCCcc-----ccccCCcccee
Q 000936 108 IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK--EDLVVSASLDQTVRVWDIGALRK-----KTVSPADDILR 180 (1219)
Q Consensus 108 l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~I~vwd~~~~~~-----~~~~~~~~~~~ 180 (1219)
++-...+..|+-.|+.+.+....+......+-...|..+ +..++-.-.... -|...+... -...+...++.
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~--d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISRE--DWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG--G-----SHHHHHHHHHC---EEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeeh--hccCccccHHHHHHHhhCCCceEEE
Confidence 776666778999999998877777777777766777533 333332210000 000000000 00000001111
Q ss_pred eccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECC--CCCeeeEEeecCCCCCeEE
Q 000936 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR-----QVKLWRMN--ETKAWEVDTLRGHMNNVSC 253 (1219)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg-----~I~iwd~~--~~~~~~~~~~~~h~~~I~~ 253 (1219)
+ ....+... ++......+.-+.|+|..+.+++-+..| .-+||-++ ....+++... .....+..
T Consensus 173 i--------dl~tG~~~-~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gH 242 (386)
T PF14583_consen 173 I--------DLKTGERK-VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGH 242 (386)
T ss_dssp E--------ETTT--EE-EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEE
T ss_pred E--------ECCCCcee-EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCccccc
Confidence 1 00111122 2333456677899999877666655433 12455444 4443222221 11233455
Q ss_pred EEEccCCCEEEEEe-----CCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEE-eCCCeeEEEecCCcceEEe
Q 000936 254 VMFHAKQDIIVSNS-----EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG-HDSGMIVFKLERERPAFAV 327 (1219)
Q Consensus 254 l~~sp~g~~L~s~s-----~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g-~d~gi~v~~l~~~~~~~s~ 327 (1219)
=-|.|||..|.--+ .+..|.-+|..++........ .....+..++||++++.- ++..+.+-+-
T Consensus 243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~--------- 311 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADA--------- 311 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------
T ss_pred ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCcccccc---------
Confidence 57899998776532 244577788888765433322 245677788999987753 3323322100
Q ss_pred cCCEEEEEeCCeEEEEEecCCcceeeEeec-----CCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEec
Q 000936 328 SGDSLFYAKDRFLRYYEFSTQKDTQVIPIR-----RPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1219)
Q Consensus 328 ~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~-----~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~ 397 (1219)
+...+ -.+..|++++...+....+.... ..++ . ...=....|||||++++..++ ..|...||-+.
T Consensus 312 -~~~~~-~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~-~-q~~hPhp~FSPDgk~VlF~Sd-~~G~~~vY~v~ 381 (386)
T PF14583_consen 312 -GGYKI-ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGD-R-QVTHPHPSFSPDGKWVLFRSD-MEGPPAVYLVE 381 (386)
T ss_dssp -----------EEEEEETTTTEEEEEEE-------BTTB-S-STT----EE-TTSSEEEEEE--TTSS-EEEEEE
T ss_pred -cccee-cCCcEEEEeccccCceeeeeeccCcceeecCC-C-ccCCCCCccCCCCCEEEEECC-CCCCccEEEEe
Confidence 00000 02334555666554433222211 0000 0 001245899999999999887 45566677654
No 320
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.30 E-value=0.0022 Score=66.41 Aligned_cols=104 Identities=11% Similarity=-0.006 Sum_probs=78.2
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEE
Q 000936 63 QPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142 (1219)
Q Consensus 63 ~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~ 142 (1219)
..+++.|+..+.++--|..+|+....-. -...|.+-+.- -|.+++.|...|.+++.+..+|..+..+.....-=....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4578888889999999999998776532 23344443333 456799999999999999999988777764333223455
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCc
Q 000936 143 FHPKEDLVVSASLDQTVRVWDIGALR 168 (1219)
Q Consensus 143 ~sp~~~~l~s~s~dg~I~vwd~~~~~ 168 (1219)
..+++..+..|+.|++....|.++..
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccc
Confidence 67889999999999999999987743
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.28 E-value=0.00015 Score=85.99 Aligned_cols=304 Identities=10% Similarity=0.038 Sum_probs=172.0
Q ss_pred EEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEE-----------EEEeecCCCeEEEEEcCCCC
Q 000936 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVK-----------YVLEGHDRGVNWAAFHPTLP 217 (1219)
Q Consensus 149 ~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~V~~l~~sp~g~ 217 (1219)
.+.||+..|.|+|+-+.+++.....|--. .....-+|-.+.... ..-..|...+..-.=..||+
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~-----~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr 142 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFN-----RDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGR 142 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeec-----CCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCcccee
Confidence 46788889999999998887765443211 001111111110000 00011211111111123677
Q ss_pred EEEEEeC-CCeEEEEECCCCCeeeEEeecCCCCCeEE-------------------EEEccCCCEEEEE-eCCCcEEEEe
Q 000936 218 LIVSGAD-DRQVKLWRMNETKAWEVDTLRGHMNNVSC-------------------VMFHAKQDIIVSN-SEDKSIRVWD 276 (1219)
Q Consensus 218 ~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~h~~~I~~-------------------l~~sp~g~~L~s~-s~dg~I~iwd 276 (1219)
+++.-.. +.+|...+++..+.-.+..+.. ...+.. +=++|||+.+... -..+.+.+.|
T Consensus 143 ~~findk~n~Rvari~l~~~~~~~i~~iPn-~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID 221 (635)
T PRK02888 143 YLFINDKANTRVARIRLDVMKCDKITELPN-VQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVD 221 (635)
T ss_pred EEEEecCCCcceEEEECccEeeceeEeCCC-ccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEE
Confidence 8877663 5556666665544332333321 111222 2234455544322 2235677788
Q ss_pred CCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEe---CCCeeEEEecCCc------------ceEEecCCEEEEEeCCeEE
Q 000936 277 VTKRTGVQTFRREHDRFWILASHPEMNLLAAGH---DSGMIVFKLERER------------PAFAVSGDSLFYAKDRFLR 341 (1219)
Q Consensus 277 l~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~---d~gi~v~~l~~~~------------~~~s~~~~~l~~~~d~~i~ 341 (1219)
..+.+...++.... +...+.++|++.++.+.+ ..+..+-.+.... ..+..+|+..++ .++.|.
T Consensus 222 ~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V-~gn~V~ 299 (635)
T PRK02888 222 AETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI-GGSKVP 299 (635)
T ss_pred CccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE-CCCEEE
Confidence 88777766665443 456788999999887764 3333333222211 122335555444 567899
Q ss_pred EEEecC-----CcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCC---CC------Cccc
Q 000936 342 YYEFST-----QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI---GR------GDSV 407 (1219)
Q Consensus 342 v~d~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~---~~------~~~~ 407 (1219)
+.|..+ .+....++..+ .+..+.+||||+++++++. .+.++.++++.+... .. +...
T Consensus 300 VID~~t~~~~~~~v~~yIPVGK--------sPHGV~vSPDGkylyVank-lS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 300 VVDGRKAANAGSALTRYVPVPK--------NPHGVNTSPDGKYFIANGK-LSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred EEECCccccCCcceEEEEECCC--------CccceEECCCCCEEEEeCC-CCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 999887 23333344333 6677999999999888776 556899999876431 00 0000
Q ss_pred cccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCC-----------ceeEeeeCCcceEEEEE------eCCCcEEEEe
Q 000936 408 QDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN-----------EVVKKSILPIAADAIFY------AGTGNLLCRA 470 (1219)
Q Consensus 408 ~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~-----------~~~~~i~~~~~v~~l~~------s~dg~~L~s~ 470 (1219)
...-. .-...+|.++|....+-.-|.+|..||+.. ..+.++..|..+-.+.. .+||++|++.
T Consensus 371 vevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 371 PELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSL 449 (635)
T ss_pred eccCC-CcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEc
Confidence 11111 123578888988777777899999999874 45666777776666666 7889999873
No 322
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.28 E-value=6.7e-06 Score=84.45 Aligned_cols=146 Identities=17% Similarity=0.314 Sum_probs=96.7
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEE-EEec-ccCCCEEEEEEecCCCEEEEEE-----CCCeEEEEEcCCCeEEEEEccC
Q 000936 20 KRPWILASLHSGVIQLWDYRMGTLI-DRFD-EHDGPVRGVHFHKSQPLFVSGG-----DDYKIKVWNYKMHRCLFTLLGH 92 (1219)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g~~i-~~l~-~h~~~V~~l~fsp~~~~Lasgs-----~Dg~I~vWd~~~~~~~~~l~~h 92 (1219)
-++.+++++.||.+.+++.+.-..+ .+.. .|.+. .+.+....+..+.+++ .-+..+.|+++..+.+..-...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~ 178 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA 178 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccc
Confidence 4567899999999999997652111 1111 11111 1222333444444432 1234566666543332222223
Q ss_pred CCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeE-EEEEecCCCCeEEEEEecCC-CEEEEEECCCeEEEEECCC
Q 000936 93 LDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTC-ISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGA 166 (1219)
Q Consensus 93 ~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~-i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~ 166 (1219)
.+.|++++-+|..+ .+++|+.||.+.+||+++... ...+..|...+..+.|||.. ..|++++.||.+..||..+
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 34599999999755 677888999999999988754 34567899999999999965 7899999999999999865
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.27 E-value=0.0094 Score=69.54 Aligned_cols=87 Identities=11% Similarity=0.121 Sum_probs=64.9
Q ss_pred EEEecCCc-----eeEeeeCCcceEEEEEeCCCcEEEEe--CCeEEEEEcCCCeEEEEEecCCeeEEEEcCCCCEEEEEe
Q 000936 437 LVKNLKNE-----VVKKSILPIAADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLS 509 (1219)
Q Consensus 437 ~Iwdl~~~-----~~~~i~~~~~v~~l~~s~dg~~L~s~--d~~I~l~dl~~~~~l~~~~~~~v~~v~ws~dg~~la~~s 509 (1219)
.+|++... .+.++..+..+.+.+++|+...|+.+ ||.|.+||...+.....-..-.+..++|+|+|..+++++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s 318 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGS 318 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEc
Confidence 45666532 23345556689999999998887654 999999999887655443334578899999999999988
Q ss_pred CC-eEEEEecCccce
Q 000936 510 KH-AIIIASKKLVHQ 523 (1219)
Q Consensus 510 ~~-~i~i~~~~l~~~ 523 (1219)
.. .+.+||..+..+
T Consensus 319 ~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 319 EQGELQCFDMALSPI 333 (545)
T ss_pred CCceEEEEEeecCcc
Confidence 84 488999877654
No 324
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.27 E-value=0.03 Score=68.65 Aligned_cols=499 Identities=12% Similarity=0.101 Sum_probs=243.7
Q ss_pred ccCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE-------EEecccCCCEEEEEEecC----CCEEEEEE---CC
Q 000936 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI-------DRFDEHDGPVRGVHFHKS----QPLFVSGG---DD 72 (1219)
Q Consensus 7 ~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i-------~~l~~h~~~V~~l~fsp~----~~~Lasgs---~D 72 (1219)
|..+-..|+.+-++| .|.+|++.|.=++-.+.+.... .++ ..-+||..++.-.. ++.++|++ .|
T Consensus 304 ge~siassi~~L~ng-~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kd 381 (1096)
T KOG1897|consen 304 GETSIASSINYLDNG-VLFVGSRFGDSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQGQIVTCSGAFKD 381 (1096)
T ss_pred CCcchhhhhhcccCc-eEEEeccCCceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCceEEEEeCCCCC
Confidence 334445566666555 7788888777676666543222 233 24468888877542 34677665 58
Q ss_pred CeEEEEEcCCC---eEEEEEccCCCCEEEEE--EcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEec-
Q 000936 73 YKIKVWNYKMH---RCLFTLLGHLDYIRTVQ--FHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP- 145 (1219)
Q Consensus 73 g~I~vWd~~~~---~~~~~l~~h~~~I~~l~--fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp- 145 (1219)
|++++..-.-+ --...+.| -..++.+. +.++-. +++.+-.+ .-++..+...-......+-......+..+-
T Consensus 382 gSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~-eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i 459 (1096)
T KOG1897|consen 382 GSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFIS-ETRVLNISEEVEETEDPGFSTDEQTIFCSTI 459 (1096)
T ss_pred CcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEecc-ceEEEEEccceEEeccccccccCceEEEEcc
Confidence 99998864322 11122333 33455555 333222 44443332 333444332111111111112222222221
Q ss_pred CCCEEEEEECCCeEEEEECCCCccccccCCccceeecccc-ccc-cccccceEEE-----------EEeecCCCeEEEEE
Q 000936 146 KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN-TDL-FGGVDAVVKY-----------VLEGHDRGVNWAAF 212 (1219)
Q Consensus 146 ~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~-----------~~~~~~~~V~~l~~ 212 (1219)
.++.++=.+ ...||+++-......-..|..........+ ..+ ..+....+.+ ........|.|+.+
T Consensus 460 ~g~~lvQvT-s~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDi 538 (1096)
T KOG1897|consen 460 NGNQLVQVT-SNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDI 538 (1096)
T ss_pred CCceEEEEe-cccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEec
Confidence 223332222 234555555432222222222222211111 111 1111111111 11123467889988
Q ss_pred cCCC------CEEEEEeCCCeEEEEECCCCCeeeEEe-ecC--CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC--CCe
Q 000936 213 HPTL------PLIVSGADDRQVKLWRMNETKAWEVDT-LRG--HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT--KRT 281 (1219)
Q Consensus 213 sp~g------~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~--h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~--~~~ 281 (1219)
+|-| +++++|..+..+.+.-........... +.+ -..+|.-..+-.|..+|.++..||.+.-|-+. ++.
T Consensus 539 sp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~ 618 (1096)
T KOG1897|consen 539 SPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQ 618 (1096)
T ss_pred ccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccce
Confidence 8742 278888877666554433222211111 111 12234444555568899999999998766544 333
Q ss_pred eEEEE--ecCCCCEEEEEEeC-CCCEEEEEeCCCeeEEEecCCcc-------------eE--EecCCEEEEEeCCeEEEE
Q 000936 282 GVQTF--RREHDRFWILASHP-EMNLLAAGHDSGMIVFKLERERP-------------AF--AVSGDSLFYAKDRFLRYY 343 (1219)
Q Consensus 282 ~~~~~--~~~~~~i~~l~~sp-~~~~la~g~d~gi~v~~l~~~~~-------------~~--s~~~~~l~~~~d~~i~v~ 343 (1219)
.-..- .....++.--.|+. .++.+.+.++.-.++|.....-. .+ ...++.++++..+.+++.
T Consensus 619 lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~ 698 (1096)
T KOG1897|consen 619 LSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIG 698 (1096)
T ss_pred EccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEE
Confidence 22211 11223333334443 33345555555555544332211 11 123467888888889988
Q ss_pred EecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCC---------CCEEEEEEecCCCCCCCcc--ccccc-
Q 000936 344 EFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVD---------GGSYELYVIPKDSIGRGDS--VQDAK- 411 (1219)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~---------dg~i~l~~~~~~~~~~~~~--~~~~~- 411 (1219)
-+..-+.+...+++. ...++.+++.+....+.+.+... ...+....+-...+-+... .+...
T Consensus 699 tid~iqkl~irtvpl------~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E 772 (1096)
T KOG1897|consen 699 TIDEIQKLHIRTVPL------GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNE 772 (1096)
T ss_pred EecchhhcceeeecC------CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccc
Confidence 887755544444432 22778888888554444443211 1112222211111111110 11111
Q ss_pred -cCceeEEEEEeC-CeEEEEEcC----------CCEEEEEecCC-ceeEeeeCC---cceEEEEEeCCCcEEEEeCCeEE
Q 000936 412 -KGLGGSAIFIAR-NRFAVLDKS----------SNQVLVKNLKN-EVVKKSILP---IAADAIFYAGTGNLLCRAEDRVV 475 (1219)
Q Consensus 412 -~~~i~~~~fs~d-~~~l~~~~~----------dg~I~Iwdl~~-~~~~~i~~~---~~v~~l~~s~dg~~L~s~d~~I~ 475 (1219)
...+.++.|..| +.+++.|+. .|.|.|+.+.. +.++.+..+ ..+.++. --+|++||.-+..|+
T Consensus 773 ~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~-~fngkllA~In~~vr 851 (1096)
T KOG1897|consen 773 TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV-EFNGKLLAGINQSVR 851 (1096)
T ss_pred eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh-hhCCeEEEecCcEEE
Confidence 113445558877 788888763 57788887774 433333222 1333322 135889999999999
Q ss_pred EEEcCCCeEEEEEec--CCeeEEEEcCCCCEEEEEeCC-eEEEEe
Q 000936 476 IFDLQQRLVLGDLQT--PFVKYVVWSNDMESVALLSKH-AIIIAS 517 (1219)
Q Consensus 476 l~dl~~~~~l~~~~~--~~v~~v~ws~dg~~la~~s~~-~i~i~~ 517 (1219)
+|++.+++.++.-.. .++..+.....|..++++.-- .+.+..
T Consensus 852 Lye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 852 LYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQ 896 (1096)
T ss_pred EEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence 999999866654433 566677777778888877763 344443
No 325
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.27 E-value=0.00084 Score=79.58 Aligned_cols=265 Identities=9% Similarity=0.005 Sum_probs=153.3
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEEccCCC----------CEE-EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000936 63 QPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD----------YIR-TVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131 (1219)
Q Consensus 63 ~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~----------~I~-~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~ 131 (1219)
+..+++++.++.+.-+|.++|+.+........ .+. .+.. ++..++.++.+|.+..+|..+|+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 55777788889999999999998887643221 000 0111 2446778888999999999999988777
Q ss_pred ecCCCCeEE-EEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEE
Q 000936 132 TGHNHYVMC-ASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210 (1219)
Q Consensus 132 ~~h~~~V~~-l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 210 (1219)
.... .+.+ ... .+..+++++.++.+.-+|..+++..-..+... ......+...++
T Consensus 147 ~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~------------------~~~~~~~~~sP~--- 202 (394)
T PRK11138 147 KVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDV------------------PSLTLRGESAPA--- 202 (394)
T ss_pred cCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCC------------------CcccccCCCCCE---
Confidence 6432 2221 112 24567778889999999998876542211000 000000111111
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCC--C---CeEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCeeE
Q 000936 211 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM--N---NVSCVMFHA--KQDIIVSNSEDKSIRVWDVTKRTGV 283 (1219)
Q Consensus 211 ~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~--~---~I~~l~~sp--~g~~L~s~s~dg~I~iwdl~~~~~~ 283 (1219)
.. +..++.++.+|.+..+|..+++..-........ . ....+.-+| .+..++.++.+|.+..+|..+++.+
T Consensus 203 -v~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~ 279 (394)
T PRK11138 203 -TA--FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV 279 (394)
T ss_pred -EE--CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence 11 234666777888888888877641111111000 0 001111122 3556777788999999999999876
Q ss_pred EEEecCCC--CE----EEEEEeCCCCEEEEEeCCCeeEEEecCCc----ceEEecCCEEEEE-eCCeEEEEEecCCccee
Q 000936 284 QTFRREHD--RF----WILASHPEMNLLAAGHDSGMIVFKLERER----PAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQ 352 (1219)
Q Consensus 284 ~~~~~~~~--~i----~~l~~sp~~~~la~g~d~gi~v~~l~~~~----~~~s~~~~~l~~~-~d~~i~v~d~~~~~~~~ 352 (1219)
........ .+ .-...+.++.+.+.-..+|..+|...... ......++.+++. .++.+...|..+|+.+.
T Consensus 280 W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 280 WKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred EeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 65432211 00 11123345555555555666677654311 1222356777777 88999999999988755
Q ss_pred eEee
Q 000936 353 VIPI 356 (1219)
Q Consensus 353 ~~~~ 356 (1219)
...+
T Consensus 360 ~~~~ 363 (394)
T PRK11138 360 QQKV 363 (394)
T ss_pred EEEc
Confidence 4433
No 326
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.25 E-value=1.3e-05 Score=82.42 Aligned_cols=206 Identities=17% Similarity=0.245 Sum_probs=120.0
Q ss_pred EEEecccCC-CEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE------------EEccCCCCEEEEEEcCCCCEEEE
Q 000936 44 IDRFDEHDG-PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF------------TLLGHLDYIRTVQFHHEYPWIVS 110 (1219)
Q Consensus 44 i~~l~~h~~-~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~------------~l~~h~~~I~~l~fs~d~~~l~s 110 (1219)
+....+|.+ .|+.+.++.+- .|+++..++.+......++.+.. .+..|.++-.+-+.+-.++.+++
T Consensus 28 vD~i~~~~d~~~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~ 106 (319)
T KOG4714|consen 28 VDEIMQHADVKLSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCI 106 (319)
T ss_pred hhhcccccceEEEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEe
Confidence 333334433 25666665443 56677677777666554443332 22223332222223334567999
Q ss_pred EECCCeEEEEECCCCeE-EEEEe-cCCCCeEEEEEecCCCEEEEEEC-----CCeEEEEECCCCccccccCCccceeecc
Q 000936 111 ASDDQTIRIWNWQSRTC-ISVLT-GHNHYVMCASFHPKEDLVVSASL-----DQTVRVWDIGALRKKTVSPADDILRLSQ 183 (1219)
Q Consensus 111 ~s~Dg~I~iwd~~s~~~-i~~~~-~h~~~V~~l~~sp~~~~l~s~s~-----dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 183 (1219)
+..||.+.+.+.+.-.. ...+. .|.+ -.+.+....++.+.++.. -+..+.|+++..+..
T Consensus 107 ~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~------------- 172 (319)
T KOG4714|consen 107 GYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTL------------- 172 (319)
T ss_pred cCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccc-------------
Confidence 99999999998764111 01111 1111 112222334444444321 122333443321110
Q ss_pred ccccccccccceEEEEEeecCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEcc-CCC
Q 000936 184 MNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA-KQD 261 (1219)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp-~g~ 261 (1219)
..... ....|.+++-+|.. +.+++|++||.+.+||.+.... ++..+..|..+++.+-||| ++.
T Consensus 173 -------------~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-p~S~l~ahk~~i~eV~FHpk~p~ 237 (319)
T KOG4714|consen 173 -------------IPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-PVSLLKAHKAEIWEVHFHPKNPE 237 (319)
T ss_pred -------------ccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccc-hHHHHHHhhhhhhheeccCCCch
Confidence 00111 12338889999865 4677888999999999998743 4677889999999999999 678
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 000936 262 IIVSNSEDKSIRVWDVTK 279 (1219)
Q Consensus 262 ~L~s~s~dg~I~iwdl~~ 279 (1219)
.|+++++||.+..||..+
T Consensus 238 ~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred heeEecCCCcEEEEcCCC
Confidence 999999999999999764
No 327
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.24 E-value=5e-05 Score=90.56 Aligned_cols=182 Identities=13% Similarity=0.183 Sum_probs=135.0
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEE
Q 000936 63 QPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142 (1219)
Q Consensus 63 ~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~ 142 (1219)
+..++.|+....+..+|+.+.+..+...-..+.|.-+. .+++.+.+|...|+|.+-|..+.+.+.++..|++.|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 34677777777888899988877776654444555554 4567899999999999999999999999999999997654
Q ss_pred EecCCCEEEEEEC---------CCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEc
Q 000936 143 FHPKEDLVVSASL---------DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213 (1219)
Q Consensus 143 ~sp~~~~l~s~s~---------dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 213 (1219)
-.|+.|++++. |.-|+|||++..+.....+. + ..-.-+.|+
T Consensus 225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---------------------------~-~~P~flrf~ 274 (1118)
T KOG1275|consen 225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---------------------------P-YGPQFLRFH 274 (1118)
T ss_pred --ccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---------------------------c-cCchhhhhc
Confidence 45899999875 55689999998775542211 1 111446777
Q ss_pred CCC-CEEEEEeCCCeEEEEECCCCCee--eEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 000936 214 PTL-PLIVSGADDRQVKLWRMNETKAW--EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (1219)
Q Consensus 214 p~g-~~l~sg~~dg~I~iwd~~~~~~~--~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwd 276 (1219)
|.- ..+++++..|...+-|..+.... .+..+....+.+..+.++++++.++.|..+|.|.+|.
T Consensus 275 Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 275 PSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 754 46788888999999984332211 1333334445599999999999999999999999997
No 328
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.24 E-value=0.00041 Score=75.89 Aligned_cols=182 Identities=8% Similarity=-0.072 Sum_probs=112.7
Q ss_pred CCCeEEEEEcCCCeEEEEEccC--CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCC
Q 000936 71 DDYKIKVWNYKMHRCLFTLLGH--LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED 148 (1219)
Q Consensus 71 ~Dg~I~vWd~~~~~~~~~l~~h--~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~ 148 (1219)
++|+|..||..+|+.+....-- .....+. ..+++..+++++.++.|..||..+|+.+...... ..+.... ...++
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGG 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETT
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eeccc
Confidence 4689999999999999888531 1222211 3335667888899999999999999998887752 2221111 23456
Q ss_pred EEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeec--C-CCeEEEEEcCCCCEEEEEeCC
Q 000936 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH--D-RGVNWAAFHPTLPLIVSGADD 225 (1219)
Q Consensus 149 ~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~V~~l~~sp~g~~l~sg~~d 225 (1219)
.+++++.++.+..+|..+++..-.. .... . ...........+..++++..+
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSI--------------------------YLTSSPPAGVRSSSSPAVDGDRLYVGTSS 131 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEE--------------------------EE-SSCTCSTB--SEEEEETTEEEEEETC
T ss_pred ccccccceeeeEecccCCcceeeee--------------------------ccccccccccccccCceEecCEEEEEecc
Confidence 7788888899999998886653210 0111 0 011122222236788888889
Q ss_pred CeEEEEECCCCCeeeEEeecCCCCC----------eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 000936 226 RQVKLWRMNETKAWEVDTLRGHMNN----------VSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ 284 (1219)
Q Consensus 226 g~I~iwd~~~~~~~~~~~~~~h~~~----------I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~ 284 (1219)
+.|..+|..+++. +-........ +..-....++ .++.++.++.+..+|+.+++.+.
T Consensus 132 g~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w 197 (238)
T PF13360_consen 132 GKLVALDPKTGKL--LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW 197 (238)
T ss_dssp SEEEEEETTTTEE--EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE
T ss_pred CcEEEEecCCCcE--EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE
Confidence 9999999999886 3333322211 1222222244 67777777754334998888654
No 329
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=2.3e-06 Score=91.04 Aligned_cols=146 Identities=17% Similarity=0.278 Sum_probs=113.9
Q ss_pred EEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC-----eEEEEEccCCCCEEEEE
Q 000936 26 ASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH-----RCLFTLLGHLDYIRTVQ 100 (1219)
Q Consensus 26 sg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~-----~~~~~l~~h~~~I~~l~ 100 (1219)
+.+.+-.|-+-|+++|.. ..|. ..+.|.++.|+..++++..|..+|.|.+.|++.+ .+...+. |...|+++.
T Consensus 229 s~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred cccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 334456688888887743 3343 6778999999999999999999999999999754 3444444 889999998
Q ss_pred EcC-CCCEEEEEECCCeEEEEECCCCeE---EEEEecCCCCeEEEE--EecCCCEEEEEECCCeEEEEECCCCccccccC
Q 000936 101 FHH-EYPWIVSASDDQTIRIWNWQSRTC---ISVLTGHNHYVMCAS--FHPKEDLVVSASLDQTVRVWDIGALRKKTVSP 174 (1219)
Q Consensus 101 fs~-d~~~l~s~s~Dg~I~iwd~~s~~~---i~~~~~h~~~V~~l~--~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~ 174 (1219)
.-. ++++|++.+.+|+|++||.+--++ +.++.||...-.-+- .++....+++++.|-..|+|.++.++.....|
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 877 778999999999999999986666 888888865443333 34556789999999999999999877655443
No 330
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.22 E-value=3.9e-06 Score=62.61 Aligned_cols=39 Identities=23% Similarity=0.595 Sum_probs=37.0
Q ss_pred CeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 000936 41 GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (1219)
Q Consensus 41 g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd 79 (1219)
|+++.++.+|.++|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 331
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.20 E-value=2.7e-05 Score=92.81 Aligned_cols=185 Identities=10% Similarity=0.104 Sum_probs=142.6
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEE
Q 000936 20 KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTV 99 (1219)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l 99 (1219)
++..++.|+....+..+|+.+++..+...-..+.|+-|+ .+++++.+|...|+|.+-|.++.+.++++..|++.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 345677787888888999998888777765555566555 467899999999999999999999999999999999876
Q ss_pred EEcCCCCEEEEEEC---------CCeEEEEECCCCeEEEEEecCCCCeEEEEEecCC-CEEEEEECCCeEEEEECCCCcc
Q 000936 100 QFHHEYPWIVSASD---------DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRK 169 (1219)
Q Consensus 100 ~fs~d~~~l~s~s~---------Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~~~~ 169 (1219)
.. .|+.|++++. |.-|+|||++.-+.+..+.-+.++ .-+.|+|.- ..+++++..|...+-|..+...
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 55 4678888875 567899999887776666655554 457788865 5788888899999998544222
Q ss_pred ccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000936 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1219)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd 232 (1219)
... -.+........+..+.++++++.++.|..+|.|.+|.
T Consensus 301 P~~-----------------------~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPA-----------------------GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred Ccc-----------------------ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 110 1122333455699999999999999999999999997
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3.5e-05 Score=83.98 Aligned_cols=257 Identities=11% Similarity=0.035 Sum_probs=145.4
Q ss_pred EEEEECCCCeEEEEecccCCCEEEEEEecCCC-EEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCC-EEEE
Q 000936 33 IQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVS 110 (1219)
Q Consensus 33 I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~-~l~s 110 (1219)
+++.+..+-+...-+..|...|++++|||... ++..++.+.+|+|.|+++..++.++..| ..+++++|.-|.. +|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 44444444444455567788899999999877 8889999999999999999999998877 7899999988765 7888
Q ss_pred EECCCeEEEEECCCCeE-EEEEec--CCCCeEEEEEe------cCCCEEEEEECCCeEEEEECCCCccccccCCccceee
Q 000936 111 ASDDQTIRIWNWQSRTC-ISVLTG--HNHYVMCASFH------PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRL 181 (1219)
Q Consensus 111 ~s~Dg~I~iwd~~s~~~-i~~~~~--h~~~V~~l~~s------p~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~ 181 (1219)
|...|.|.|||++..+- +..+.+ ..++|..++.- +.|.+++..+. .+..|++.......
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~---------- 321 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECL---------- 321 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCC----------
Confidence 88899999999975432 222211 22344443332 23444444432 24566654321110
Q ss_pred ccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCC-------CeEEE-EECCCCCeeeEEeecCCCCC---
Q 000936 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD-------RQVKL-WRMNETKAWEVDTLRGHMNN--- 250 (1219)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~d-------g~I~i-wd~~~~~~~~~~~~~~h~~~--- 250 (1219)
......+..+...++.+++..+.++..... +.|-. -|..++... ...-+++.+.
T Consensus 322 --------------p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pV-c~~r~~~~Gs~~~ 386 (463)
T KOG1645|consen 322 --------------PCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPV-CGKRRTYFGSKQT 386 (463)
T ss_pred --------------CcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCcee-eeecccccCCccc
Confidence 000111223445555555544444333221 01111 011111110 1111112110
Q ss_pred ---eEEEEE-ccCCCEEE-EEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeC--CCCEEEEEeCCCeeEEEe
Q 000936 251 ---VSCVMF-HAKQDIIV-SNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP--EMNLLAAGHDSGMIVFKL 318 (1219)
Q Consensus 251 ---I~~l~~-sp~g~~L~-s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp--~~~~la~g~d~gi~v~~l 318 (1219)
-+...+ .++.++|+ .++..+.+.+||..+.+.++++... .++..++... .+.+|++-+++.+.+++.
T Consensus 387 kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~ 460 (463)
T KOG1645|consen 387 KLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKN 460 (463)
T ss_pred ccccccceeccccccEEEEecCCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhheecceEEEEec
Confidence 011122 23445444 4556678999999999999988754 6666665443 234666666666666554
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.19 E-value=0.0018 Score=75.29 Aligned_cols=315 Identities=12% Similarity=0.037 Sum_probs=164.3
Q ss_pred cCCCCEEEEEE---------CCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccc
Q 000936 102 HHEYPWIVSAS---------DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTV 172 (1219)
Q Consensus 102 s~d~~~l~s~s---------~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~ 172 (1219)
|||+++++... ..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|.+++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57777666532 246789999999776554443 56788899999999999887 67899999877644332
Q ss_pred cCCccceeeccccccccccccceEEEEEeec-CCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeEEeecCCCC-
Q 000936 173 SPADDILRLSQMNTDLFGGVDAVVKYVLEGH-DRGVNWAAFHPTLPLIVSGAD-DRQVKLWRMNETKAWEVDTLRGHMN- 249 (1219)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~~sp~g~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~h~~- 249 (1219)
.... ......|..+. +.+.. -+.-..+.||||+++|+.... +..|..+.+ ........
T Consensus 79 T~dg-------~~~i~nG~~dw----vyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~--------~~~~~~~~~ 139 (353)
T PF00930_consen 79 TTDG-------EPGIYNGVPDW----VYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL--------PDYSPPDSQ 139 (353)
T ss_dssp ES---------TTTEEESB--H----HHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE--------EEESSSTES
T ss_pred cccc-------ceeEEcCccce----eccccccccccceEECCCCCEEEEEEECCcCCceEEe--------eccCCcccc
Confidence 2111 00001111110 00000 122356899999998887643 333433322 11111111
Q ss_pred --CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE-Ee----cCCCCEEEEEEeCCCCEEEE-EeCCCeeEEEecCC
Q 000936 250 --NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT-FR----REHDRFWILASHPEMNLLAA-GHDSGMIVFKLERE 321 (1219)
Q Consensus 250 --~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~-~~----~~~~~i~~l~~sp~~~~la~-g~d~gi~v~~l~~~ 321 (1219)
.+..+.+-.-|.-.... .+.|+|+.+++.... .. ....-+..+.|.+++..+++ -.+..-
T Consensus 140 yp~~~~~~YPk~G~~np~v----~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q-------- 207 (353)
T PF00930_consen 140 YPEVESIRYPKAGDPNPRV----SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQ-------- 207 (353)
T ss_dssp S-EEEEEE--BTTS---EE----EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTS--------
T ss_pred CCcccccccCCCCCcCCce----EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCC--------
Confidence 23344443233222111 377788887765321 11 22334778899999883333 222110
Q ss_pred cceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEc-cCCCEEEEEEeCCCCEEEEEEecCCC
Q 000936 322 RPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYS-PTENAVLICSDVDGGSYELYVIPKDS 400 (1219)
Q Consensus 322 ~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pdg~~llv~~~~~dg~i~l~~~~~~~ 400 (1219)
....+.++|..++....+......+- ........|. +++..++..+. .+|.-+||.++...
T Consensus 208 --------------~~~~l~~~d~~tg~~~~~~~e~~~~W---v~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~ 269 (353)
T PF00930_consen 208 --------------NRLDLVLCDASTGETRVVLEETSDGW---VDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDG 269 (353)
T ss_dssp --------------TEEEEEEEEECTTTCEEEEEEESSSS---SSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTS
T ss_pred --------------CEEEEEEEECCCCceeEEEEecCCcc---eeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccc
Confidence 12234566776665544443333221 1133455655 88888887777 66777777776543
Q ss_pred CCCCccccccccCceeE-EEEEeCCeEEE-EEcC----CCEEEEEecC-CceeEeeeCCcceE-EEEEeCCCcEEEE
Q 000936 401 IGRGDSVQDAKKGLGGS-AIFIARNRFAV-LDKS----SNQVLVKNLK-NEVVKKSILPIAAD-AIFYAGTGNLLCR 469 (1219)
Q Consensus 401 ~~~~~~~~~~~~~~i~~-~~fs~d~~~l~-~~~~----dg~I~Iwdl~-~~~~~~i~~~~~v~-~l~~s~dg~~L~s 469 (1219)
.. .. .+....-.|.. +.+.++++.+. ++.. ...|..-+++ +...+.+....... .+.|||+|++++.
T Consensus 270 ~~-~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 270 GK-PR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp SE-EE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred cc-ee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEE
Confidence 21 11 22222334544 66777765444 4443 2355555666 66777776665444 7888888877754
No 334
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.16 E-value=0.0004 Score=80.84 Aligned_cols=286 Identities=13% Similarity=0.119 Sum_probs=154.6
Q ss_pred cCCCCEEEEEe---------CCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeE
Q 000936 213 HPTLPLIVSGA---------DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGV 283 (1219)
Q Consensus 213 sp~g~~l~sg~---------~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~ 283 (1219)
|||+++++... ..+.+.+||+.+++. ..+......+....|||+|+.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~---~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI---TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE---EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce---EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 57777766632 246788999999874 33333356788899999999998886 567999998777544
Q ss_pred EEEecC-----------------CCCEEEEEEeCCCCEEEEE--eCCCeeEEEec---CC-c--ce-----EEecCCEEE
Q 000936 284 QTFRRE-----------------HDRFWILASHPEMNLLAAG--HDSGMIVFKLE---RE-R--PA-----FAVSGDSLF 333 (1219)
Q Consensus 284 ~~~~~~-----------------~~~i~~l~~sp~~~~la~g--~d~gi~v~~l~---~~-~--~~-----~s~~~~~l~ 333 (1219)
+.-... -+.-..+-||||++.|+.. .+..+..+.+. .. . |. +..-|...
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n- 155 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN- 155 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC-
Confidence 321111 1223568899999999865 34444433321 11 0 10 01111111
Q ss_pred EEeCCeEEEEEecCCcceeeEeecC-CCCCCCCCCCeEEEEccCCCEEEEEE-eCCCCEEEEEEecCCCCCCCcc-cccc
Q 000936 334 YAKDRFLRYYEFSTQKDTQVIPIRR-PGSTSLNQSPRTLSYSPTENAVLICS-DVDGGSYELYVIPKDSIGRGDS-VQDA 410 (1219)
Q Consensus 334 ~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~spdg~~llv~~-~~~dg~i~l~~~~~~~~~~~~~-~~~~ 410 (1219)
-.-.+.++|+.+++...+..... ... ...+..+.|.++++.+++.. .-......++.++... +.... ....
T Consensus 156 --p~v~l~v~~~~~~~~~~~~~~~~~~~~---~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t-g~~~~~~~e~ 229 (353)
T PF00930_consen 156 --PRVSLFVVDLASGKTTELDPPNSLNPQ---DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST-GETRVVLEET 229 (353)
T ss_dssp ---EEEEEEEESSSTCCCEE---HHHHTS---SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT-TTCEEEEEEE
T ss_pred --CceEEEEEECCCCcEEEeeeccccCCC---ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC-CceeEEEEec
Confidence 11246678888876543222200 011 22788999999999555443 3333444444443321 11110 1111
Q ss_pred ccCc---eeEEEEE-eC-CeEEEEEcCCCE--EEEEecCCceeEeeeCCc-ceEE-EEEeCCCcEEEE-e------CCeE
Q 000936 411 KKGL---GGSAIFI-AR-NRFAVLDKSSNQ--VLVKNLKNEVVKKSILPI-AADA-IFYAGTGNLLCR-A------EDRV 474 (1219)
Q Consensus 411 ~~~~---i~~~~fs-~d-~~~l~~~~~dg~--I~Iwdl~~~~~~~i~~~~-~v~~-l~~s~dg~~L~s-~------d~~I 474 (1219)
..+. .....|. ++ +.++.....+|. |.+++..+...+.+.... .|.. +.+++++..|.. + ...|
T Consensus 230 ~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~l 309 (353)
T PF00930_consen 230 SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHL 309 (353)
T ss_dssp SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEE
T ss_pred CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEE
Confidence 1222 2356665 44 466666666665 444555666666665444 7755 568888777743 3 2356
Q ss_pred EEEEcCCCeEEEEEec-CCee-EEEEcCCCCEEEEEe
Q 000936 475 VIFDLQQRLVLGDLQT-PFVK-YVVWSNDMESVALLS 509 (1219)
Q Consensus 475 ~l~dl~~~~~l~~~~~-~~v~-~v~ws~dg~~la~~s 509 (1219)
+..++..+..+..+.. .... .+.|||||++++...
T Consensus 310 Y~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 310 YRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 6667772334444444 3344 899999999886543
No 335
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=9.5e-05 Score=80.75 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=78.3
Q ss_pred EEEEEcCCCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCC-CEEEE
Q 000936 75 IKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVS 152 (1219)
Q Consensus 75 I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~-~~l~s 152 (1219)
+++.+..+.+...-+.+|...|+.++|||... ++..++.+..|+|.|+++..++..+..+ ..+++++|.-+. ++|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 55555555555556677888999999999887 7889999999999999999999999887 789999998876 67888
Q ss_pred EECCCeEEEEECCCCc
Q 000936 153 ASLDQTVRVWDIGALR 168 (1219)
Q Consensus 153 ~s~dg~I~vwd~~~~~ 168 (1219)
|...|.|.+||++..+
T Consensus 254 Gl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPE 269 (463)
T ss_pred eccCceEEEEEccCCC
Confidence 8899999999998754
No 336
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.16 E-value=4.9e-06 Score=62.05 Aligned_cols=36 Identities=17% Similarity=0.554 Sum_probs=34.7
Q ss_pred cceecccCCCEEEEEEeCCCCEEEEEECCCeEEEEE
Q 000936 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWD 37 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspdg~~Lasg~~dg~I~iWd 37 (1219)
+++|++|.+.|++|+|+|++++|++++.|++|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 578999999999999999999999999999999997
No 337
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=6.3e-06 Score=87.83 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=125.1
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccc
Q 000936 109 VSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDL 188 (1219)
Q Consensus 109 ~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1219)
++.+.+..|-+-|+.+|-.. .+. ..+.|.++.|+..++++..|+.+|.|.++|++.......
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~---------------- 289 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG---------------- 289 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC----------------
Confidence 56666788889998877432 232 567799999999899999999999999999987422111
Q ss_pred cccccceEEEEEeecCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCe-eeEEeecCCCCCeEEEEE--ccCCCEEE
Q 000936 189 FGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKA-WEVDTLRGHMNNVSCVMF--HAKQDIIV 264 (1219)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~V~~l~~sp-~g~~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~h~~~I~~l~~--sp~g~~L~ 264 (1219)
......-|++.|+++..-. +++.|++.+.+|.|++||.+..+. ..+.+..||.+.-.-+-+ ++....++
T Consensus 290 -------~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~ 362 (425)
T KOG2695|consen 290 -------WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIF 362 (425)
T ss_pred -------cceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEE
Confidence 1113345889999988776 788999999999999999986554 237778888776544443 45667888
Q ss_pred EEeCCCcEEEEeCCCCeeEEEEecCCC----CEEEEEEeC
Q 000936 265 SNSEDKSIRVWDVTKRTGVQTFRREHD----RFWILASHP 300 (1219)
Q Consensus 265 s~s~dg~I~iwdl~~~~~~~~~~~~~~----~i~~l~~sp 300 (1219)
+++.|...|||.+..+..+.+++.... .++++++..
T Consensus 363 s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 363 SVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred EccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 999999999999999999888765432 355555543
No 338
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.11 E-value=0.0035 Score=65.05 Aligned_cols=143 Identities=13% Similarity=0.051 Sum_probs=100.4
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEE
Q 000936 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100 (1219)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~ 100 (1219)
..+++.|++.|.+.--|..+|.++.+-. -..+|.+-+.- -|.+++.|...|.+++.+.++|.....+.....--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4678889999999999999998876542 22333333322 466899999999999999999988777764333223344
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECC
Q 000936 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (1219)
Q Consensus 101 fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~ 165 (1219)
..+++..+..++.|++.+..|..+..++...+...+...+-+..|-...|..+...|.|.--...
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence 56788899999999999999999999988876554444455556633445555555555444433
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.00015 Score=84.96 Aligned_cols=137 Identities=10% Similarity=0.117 Sum_probs=101.4
Q ss_pred cCCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE-ecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeE-
Q 000936 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDR-FDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC- 85 (1219)
Q Consensus 8 h~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~-l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~- 85 (1219)
|..+|.--+++..+++++.|+..|.+++|+-..+..... ..+..+.+..+..|++..++|.|+..|.|.|+-+..+.+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 556777778888899999999999999999655544332 234566777888899999999999999999998765321
Q ss_pred ----EEEE-ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCe----EEEEEecCCCCeEEEEEe
Q 000936 86 ----LFTL-LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT----CISVLTGHNHYVMCASFH 144 (1219)
Q Consensus 86 ----~~~l-~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~----~i~~~~~h~~~V~~l~~s 144 (1219)
+... ..|...|++++|++++..+++|...|+|..-.+.+.. ....+....+.|..+...
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 1111 2378899999999999999999999999998887721 122233345566666555
No 340
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=98.05 E-value=0.0038 Score=73.76 Aligned_cols=101 Identities=12% Similarity=0.050 Sum_probs=71.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHHH------HHHcCChhHHHHHHHhcCCHHHHHH
Q 000936 676 WYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKI------AEVKNDVMGQFHNALYLGDVKERVK 749 (1219)
Q Consensus 676 w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~------~~~~~~~~~~~~~al~lgd~~eai~ 749 (1219)
....|.++...|.+.+|..+|+.++.|+.+.-+...+.+.+ .+..++. -+.|+.....-....|+.+..+|+-
T Consensus 938 ~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e-~~~~AE~L~S~l~ve~R~~~da~~i~l~yl~N~~eava 1016 (1243)
T COG5290 938 HISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYE-FNLCAELLPSDLLVEFRKAGDAEKILLTYLENLYEAVA 1016 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchH-HHHHHHhhhhhHHHHHHHhcCHHHHHHHHHhCHHHHHH
Confidence 34456666677777777778888888877776665555444 2222221 1334344444456899999999999
Q ss_pred HHHHcCCChHHHHHHHhcCChHHHHHHH
Q 000936 750 ILESAGHLPLAYITASVHGLQDVAERLA 777 (1219)
Q Consensus 750 i~~~~g~~~~A~~la~~~g~~~~a~~l~ 777 (1219)
++++..++.+|+..|+.-++.+....+.
T Consensus 1017 ~~ckgs~y~ea~~~a~~s~~~e~~k~~~ 1044 (1243)
T COG5290 1017 MDCKGSEYREAFCEAMVSRLVESEKHYE 1044 (1243)
T ss_pred HHcccccchHHHHHHHHhhhhhHHHHhh
Confidence 9999999999999999999987665554
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.02 E-value=0.0017 Score=75.50 Aligned_cols=276 Identities=11% Similarity=0.101 Sum_probs=142.2
Q ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC--------
Q 000936 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM-------- 82 (1219)
Q Consensus 11 ~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~-------- 82 (1219)
.|+.|+|.++..-|++|..+|.|.||.+...+... ..-..+-....+.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999976543322 000011111111110 00111112223221
Q ss_pred -CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--c------CCCCeEEEEEec-----CC-
Q 000936 83 -HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT--G------HNHYVMCASFHP-----KE- 147 (1219)
Q Consensus 83 -~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~--~------h~~~V~~l~~sp-----~~- 147 (1219)
-.+..-+....++|++++.|.-| +++.|..+|.+.|.|++....+..-. . ....|+++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 13344455568899999998655 89999999999999998888776532 2 345688888863 22
Q ss_pred --CEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEE-EcCC---------
Q 000936 148 --DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA-FHPT--------- 215 (1219)
Q Consensus 148 --~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~-~sp~--------- 215 (1219)
-.+++|+..|.+.+|.+--... ..+.. ........+.+.|..+. ++.+
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~-------g~f~v-------------~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~ 213 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSN-------GRFSV-------------QFAGATTNHDSPILSIIPINADTGESALATI 213 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GG-------G-EEE-------------EEEEEE--SS----EEEEEETTT--B-B-BH
T ss_pred cceEEEEEeCCCCEEEEEEecCCC-------CceEE-------------EEeeccccCCCceEEEEEEECCCCCcccCch
Confidence 3788999999999998741000 00000 00001122334443333 2111
Q ss_pred -----------CCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEc-----cCCCEEEEEeCCCcEEEEeCCC
Q 000936 216 -----------LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH-----AKQDIIVSNSEDKSIRVWDVTK 279 (1219)
Q Consensus 216 -----------g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~s-----p~g~~L~s~s~dg~I~iwdl~~ 279 (1219)
-+.+++...+..++++...+.+. ........-....+.+- ..+..|++-..+|.|+++.+..
T Consensus 214 ~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~--~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 214 SAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKG--AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp HHHHGGGGT----EEEEEE-SSEEEEE-TT---E--EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred hHhhccccCCCcCcEEEEEcccceEEEeCCCCcc--cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 12344445578899999988775 33322222223334442 3567788889999999999999
Q ss_pred CeeEEEEecCC----CCEEEEEEeCCCCEEEEEeCCCeeEEE
Q 000936 280 RTGVQTFRREH----DRFWILASHPEMNLLAAGHDSGMIVFK 317 (1219)
Q Consensus 280 ~~~~~~~~~~~----~~i~~l~~sp~~~~la~g~d~gi~v~~ 317 (1219)
-+.+....... ..+...+++++|..+...+...+.++.
T Consensus 292 Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~s 333 (395)
T PF08596_consen 292 LKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFS 333 (395)
T ss_dssp --EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEE
T ss_pred chHhhcccCCCccccccccccEECCCCCEEEEeCcccEEEEE
Confidence 88887776542 123445667888777666555544443
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.00074 Score=79.29 Aligned_cols=118 Identities=12% Similarity=0.168 Sum_probs=90.8
Q ss_pred CCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCC
Q 000936 136 HYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (1219)
Q Consensus 136 ~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~ 215 (1219)
..|.--++...+++++.|+.-|.+.+|+-.++.... +...+..+.+...+.|++
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~--------------------------~~~~~~~~~~~~~~vs~~ 87 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK--------------------------LKNEGATGITCVRSVSSV 87 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhc--------------------------ccccCccceEEEEEecch
Confidence 344445566778999999999999999987755432 123335566777888999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeEEee----cCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000936 216 LPLIVSGADDRQVKLWRMNETKAWEVDTL----RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1219)
Q Consensus 216 g~~l~sg~~dg~I~iwd~~~~~~~~~~~~----~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~ 279 (1219)
..+++.|+..|.|.++-++.........+ ..|...|++++|++++..+++|...|+|..-.+.+
T Consensus 88 e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 88 EYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 89999999999999998876443222211 23778999999999999999999999999888876
No 343
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.98 E-value=0.0014 Score=73.92 Aligned_cols=285 Identities=11% Similarity=0.044 Sum_probs=137.8
Q ss_pred EEEcCCCCEEEEEeC-C--CeEEEEECCCCCeeeEEeecCCC-CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE
Q 000936 210 AAFHPTLPLIVSGAD-D--RQVKLWRMNETKAWEVDTLRGHM-NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT 285 (1219)
Q Consensus 210 l~~sp~g~~l~sg~~-d--g~I~iwd~~~~~~~~~~~~~~h~-~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~ 285 (1219)
=+|.++|+.|+.+++ | ..+.+.|+.+++. ..+.... .......++|+++.++-...+..++-.|+.+.+....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i---~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEI---TQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EE---EE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEE---EECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 467888977666654 4 4677778888874 3443322 2222567788888887666667899999999887666
Q ss_pred EecCCCCEEEEEEe--CCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEE-eCCeEEEEEecCCcceeeEeecCCCCC
Q 000936 286 FRREHDRFWILASH--PEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGST 362 (1219)
Q Consensus 286 ~~~~~~~i~~l~~s--p~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~ 362 (1219)
+..+.+..-...|. .++..++....... -|....... ... .++.+ ....|..-|+.+|+...++.-..
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~-d~~~l~~~~---~f~-e~~~a~p~~~i~~idl~tG~~~~v~~~~~---- 188 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLVGIEISRE-DWKPLTKWK---GFR-EFYEARPHCRIFTIDLKTGERKVVFEDTD---- 188 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEEEEEEEGG-G-----SHH---HHH-HHHHC---EEEEEEETTT--EEEEEEESS----
T ss_pred EECCcccccccceeeCCCccEEEEEEEeeh-hccCccccH---HHH-HHHhhCCCceEEEEECCCCceeEEEecCc----
Confidence 66666655444553 34555443211000 000000000 000 00011 34456677888887766555332
Q ss_pred CCCCCCeEEEEccCCCEEEEEEe-CCCCE--EEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcC-----CC
Q 000936 363 SLNQSPRTLSYSPTENAVLICSD-VDGGS--YELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKS-----SN 434 (1219)
Q Consensus 363 ~~~~~i~~l~~spdg~~llv~~~-~~dg~--i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~-----dg 434 (1219)
.+..+.|||....+++.+- ..-.. -+||.+..................+.-=-|++||..+...+. +.
T Consensus 189 ----wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~ 264 (386)
T PF14583_consen 189 ----WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDF 264 (386)
T ss_dssp -----EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--E
T ss_pred ----cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCce
Confidence 6678999998776665543 21112 367888765443221111111223445578899976665431 33
Q ss_pred EEEEEecCCceeEeeeCCcceEEEEEeCCCcEEEEe--C----------------CeEEEEEcCCCeEEEEEec------
Q 000936 435 QVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRA--E----------------DRVVIFDLQQRLVLGDLQT------ 490 (1219)
Q Consensus 435 ~I~Iwdl~~~~~~~i~~~~~v~~l~~s~dg~~L~s~--d----------------~~I~l~dl~~~~~l~~~~~------ 490 (1219)
.|.-+|+.+.....+..-.....+..++||++++-. | --|++++++.++.......
T Consensus 265 ~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v 344 (386)
T PF14583_consen 265 WIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKV 344 (386)
T ss_dssp EEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------
T ss_pred EEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCccee
Confidence 455566663322322211256778888999999763 1 1567788888775432221
Q ss_pred ------CCeeEEEEcCCCCEEEEEeC
Q 000936 491 ------PFVKYVVWSNDMESVALLSK 510 (1219)
Q Consensus 491 ------~~v~~v~ws~dg~~la~~s~ 510 (1219)
..--.+.|||||++|++.|+
T Consensus 345 ~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 345 LDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred ecCCCccCCCCCccCCCCCEEEEECC
Confidence 01235799999999998887
No 344
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.96 E-value=0.014 Score=64.74 Aligned_cols=274 Identities=12% Similarity=0.093 Sum_probs=160.2
Q ss_pred CeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEE----------CCCeEEEEEcCCCeEEEEEccCCC------
Q 000936 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGG----------DDYKIKVWNYKMHRCLFTLLGHLD------ 94 (1219)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs----------~Dg~I~vWd~~~~~~~~~l~~h~~------ 94 (1219)
+.+.|+|..+++.+..+.. +-.-.+..+|+++.+.+++ ..-.|.+||..+-.....+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5799999999998888753 2234467899999888764 234799999999888775532221
Q ss_pred -CEEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEEecCCCCeEEEEEecCC-CEEEEEECCCeEEEEECCCCccc
Q 000936 95 -YIRTVQFHHEYPWIVSASD--DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKK 170 (1219)
Q Consensus 95 -~I~~l~fs~d~~~l~s~s~--Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~vwd~~~~~~~ 170 (1219)
....+.++.|+++++.... -..|.|.|+..++.+..+... + |....|.+ +.+.+.|.||++....+...-+.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 2234678889998776543 467999999999988877632 2 22223333 56888899999999988743221
Q ss_pred cccCCccceeeccccccccccccceEEEEEeecCC-CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCC--
Q 000936 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH-- 247 (1219)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h-- 247 (1219)
.... . . .+..... -+..-++...+..++-.+.+|.|+--|+..........+.-.
T Consensus 171 ~~~~-t----------~-----------~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~ 228 (342)
T PF06433_consen 171 AQKS-T----------K-----------VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTD 228 (342)
T ss_dssp EEEE-E----------E-----------ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-H
T ss_pred eEee-c----------c-----------ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCc
Confidence 1100 0 0 1111111 112233444444555566777777777766553222222110
Q ss_pred --------CCCeEEEEEccCCCEEEEEeC---CC-------cEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEE-EE
Q 000936 248 --------MNNVSCVMFHAKQDIIVSNSE---DK-------SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLA-AG 308 (1219)
Q Consensus 248 --------~~~I~~l~~sp~g~~L~s~s~---dg-------~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la-~g 308 (1219)
.+.-.-+++++..+.|++.-. +| .|.++|+.+++.+..+... ..+.+++.+.+.+=+. +.
T Consensus 229 ~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 229 AEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYAL 307 (342)
T ss_dssp HHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEE
T ss_pred cccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEE
Confidence 112234677776665555321 11 3888899999998887743 3466788887665332 22
Q ss_pred eCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCC
Q 000936 309 HDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360 (1219)
Q Consensus 309 ~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 360 (1219)
+. .++.+.+||..+|+.+. .+...|
T Consensus 308 ~~-------------------------~~~~l~v~D~~tGk~~~--~~~~lG 332 (342)
T PF06433_consen 308 SA-------------------------GDGTLDVYDAATGKLVR--SIEQLG 332 (342)
T ss_dssp ET-------------------------TTTEEEEEETTT--EEE--EE---S
T ss_pred cC-------------------------CCCeEEEEeCcCCcEEe--ehhccC
Confidence 21 35678899999987643 344444
No 345
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.94 E-value=0.12 Score=63.56 Aligned_cols=451 Identities=9% Similarity=0.027 Sum_probs=226.1
Q ss_pred EEeCCCCEEEEEECCC---------eEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE
Q 000936 16 SFHSKRPWILASLHSG---------VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL 86 (1219)
Q Consensus 16 ~fspdg~~Lasg~~dg---------~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~ 86 (1219)
.|+.+.+.++++.-+| .|++++-. ..+..+. ..+.++....+.+...++.++.++.+....+..+...
T Consensus 446 gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~-~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~ 522 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWR-PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLR 522 (1096)
T ss_pred cccccCceEEEEccCCceEEEEecccEEEEcch--hhhhccc-CCCceEEEEEeecceEEEEecCccEEEEEEeecccee
Confidence 3444555555554332 35555522 2333333 2344555555556667777777777777777665522
Q ss_pred EEE-ccCCCCEEEEEEcCCC------CEEEEEECCCeEEEEEC-CCCeEEEEE--ec--CCCCeEEEEEecCCCEEEEEE
Q 000936 87 FTL-LGHLDYIRTVQFHHEY------PWIVSASDDQTIRIWNW-QSRTCISVL--TG--HNHYVMCASFHPKEDLVVSAS 154 (1219)
Q Consensus 87 ~~l-~~h~~~I~~l~fs~d~------~~l~s~s~Dg~I~iwd~-~s~~~i~~~--~~--h~~~V~~l~~sp~~~~l~s~s 154 (1219)
... ..-...|.|+.++|-+ +.++.|.++..+.+.-. .....+... .+ -...|.-..|-.+..+|.++.
T Consensus 523 e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlval 602 (1096)
T KOG1897|consen 523 EVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVAL 602 (1096)
T ss_pred eeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEc
Confidence 111 1234589999999752 27888887766555432 333322222 11 123344555666678999999
Q ss_pred CCCeEEEEECC--CCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000936 155 LDQTVRVWDIG--ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1219)
Q Consensus 155 ~dg~I~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd 232 (1219)
.||.+.-|-+. ++...... ...-...++.--.|+..+..-+.+..|+-..+|.
T Consensus 603 gdG~l~~fv~d~~tg~lsd~K-------------------------k~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~ 657 (1096)
T KOG1897|consen 603 GDGALLYFVLDINTGQLSDRK-------------------------KVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYS 657 (1096)
T ss_pred CCceEEEEEEEcccceEcccc-------------------------ccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEe
Confidence 99998766543 33221100 0001123333334444444333444455555554
Q ss_pred CCCCCeeeEEeecCCCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCee--EEEEecCCCCEEEEEEeCCCCEEEEE
Q 000936 233 MNETKAWEVDTLRGHMNNVSCVMFHAK--QDIIVSNSEDKSIRVWDVTKRTG--VQTFRREHDRFWILASHPEMNLLAAG 308 (1219)
Q Consensus 233 ~~~~~~~~~~~~~~h~~~I~~l~~sp~--g~~L~s~s~dg~I~iwdl~~~~~--~~~~~~~~~~i~~l~~sp~~~~la~g 308 (1219)
.+..-. ...+. -...-.-+.|+.+ ...++++.. +.+++.-++.-+. ++++. .......+++.+....+.+.
T Consensus 658 ~n~kLv--~spls-~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~ 732 (1096)
T KOG1897|consen 658 SNGKLV--YSPLS-LKEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVL 732 (1096)
T ss_pred cCCcEE--Eeccc-hHHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeec-CCCChhheEecccceEEEEE
Confidence 433221 11110 0000011122221 233555543 4577766554332 23322 33455677888766666655
Q ss_pred eCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccC-CCEEEEEEeC-
Q 000936 309 HDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPT-ENAVLICSDV- 386 (1219)
Q Consensus 309 ~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~llv~~~~- 386 (1219)
++..-.--.. ...+. .-..++++|-++-+......+..... -..+.+..|..| +.+++|.++-
T Consensus 733 s~r~e~~~~~--------~~ee~----~~s~l~vlD~nTf~vl~~hef~~~E~---~~Si~s~~~~~d~~t~~vVGT~~v 797 (1096)
T KOG1897|consen 733 SNRIESSAEY--------YGEEY----EVSFLRVLDQNTFEVLSSHEFERNET---ALSIISCKFTDDPNTYYVVGTGLV 797 (1096)
T ss_pred ecccccchhh--------cCCcc----eEEEEEEecCCceeEEeeccccccce---eeeeeeeeecCCCceEEEEEEEee
Confidence 5322110000 00000 12345566666544433333332111 114444558777 5666665542
Q ss_pred -------CCCEEEEEEecCCCCCCCccccccccCceeEEEEE---eCCeEEEEEcCCCEEEEEecCCc-eeEeeeCCc-c
Q 000936 387 -------DGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFI---ARNRFAVLDKSSNQVLVKNLKNE-VVKKSILPI-A 454 (1219)
Q Consensus 387 -------~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs---~d~~~l~~~~~dg~I~Iwdl~~~-~~~~i~~~~-~ 454 (1219)
..|.+.+|.+.....-+. .|...+....++ -+|+++|.-+ ..|++|++..+ .++.-..+. +
T Consensus 798 ~Pde~ep~~GRIivfe~~e~~~L~~-----v~e~~v~Gav~aL~~fngkllA~In--~~vrLye~t~~~eLr~e~~~~~~ 870 (1096)
T KOG1897|consen 798 YPDENEPVNGRIIVFEFEELNSLEL-----VAETVVKGAVYALVEFNGKLLAGIN--QSVRLYEWTTERELRIECNISNP 870 (1096)
T ss_pred ccCCCCcccceEEEEEEecCCceee-----eeeeeeccceeehhhhCCeEEEecC--cEEEEEEccccceehhhhcccCC
Confidence 347888888876221111 122222222222 3578877665 89999999854 443333333 8
Q ss_pred eEEEEEeCCCcEEEEeC--Ce--EEEEEcCCCeEEEEEec---CCeeEEEEcCCCCEEEEEeCCeEEEEecCcc
Q 000936 455 ADAIFYAGTGNLLCRAE--DR--VVIFDLQQRLVLGDLQT---PFVKYVVWSNDMESVALLSKHAIIIASKKLV 521 (1219)
Q Consensus 455 v~~l~~s~dg~~L~s~d--~~--I~l~dl~~~~~l~~~~~---~~v~~v~ws~dg~~la~~s~~~i~i~~~~l~ 521 (1219)
+..+...-.|..++.+| +. +.-|+-..|...-.... .....+..-.+..++..-...++++..++.+
T Consensus 871 ~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 871 IIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred eEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCC
Confidence 88888888888888875 44 44455555444333222 4456666666667776666667777766533
No 346
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.89 E-value=0.011 Score=69.91 Aligned_cols=244 Identities=10% Similarity=0.049 Sum_probs=132.4
Q ss_pred eEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-------ecCCCCeEEEEEecC
Q 000936 74 KIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-------TGHNHYVMCASFHPK 146 (1219)
Q Consensus 74 ~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~-------~~h~~~V~~l~~sp~ 146 (1219)
.|.||+. .|+.+.++.-..+.|.++.|+.+. .|++...||.++++|+.... ...+ ......+....+..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 5889985 467777665444899999999865 56667789999999986333 1111 111122222233334
Q ss_pred CCEEEEEECCCeEEEEECCCCccc-cccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCC
Q 000936 147 EDLVVSASLDQTVRVWDIGALRKK-TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD 225 (1219)
Q Consensus 147 ~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~d 225 (1219)
| ++.-..++.+.+.+--..... ...+ .. .+. ......+........++.+....+....+
T Consensus 139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~--~~----------p~~-----~~~~~~~~~~~~i~~l~~~~~~~i~~~~g 199 (410)
T PF04841_consen 139 G--IVVLTGNNRFYVVNNIDEPVKLRRLP--EI----------PGL-----WTKFHWWPSWTVIPLLSSDRVVEILLANG 199 (410)
T ss_pred C--EEEECCCCeEEEEeCccccchhhccc--cC----------CCc-----ccccccccccccceEeecCcceEEEEecC
Confidence 4 333344555544432221100 0000 00 000 00000011000013344555555555566
Q ss_pred CeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC-CCCEEEEEEeCCCCE
Q 000936 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE-HDRFWILASHPEMNL 304 (1219)
Q Consensus 226 g~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~-~~~i~~l~~sp~~~~ 304 (1219)
+.+.+.+-...+. + ...+++..++.||++++++.-..+|.+.+.+..-.+.+..+... ......+.|.-+...
T Consensus 200 ~~i~~i~~~~~~~-----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 200 ETIYIIDENSFKQ-----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred CEEEEEEcccccc-----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 6666444332211 1 12468999999999999999999999999987766666666544 345677888876543
Q ss_pred EEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEec
Q 000936 305 LAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFS 346 (1219)
Q Consensus 305 la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~ 346 (1219)
++. ..+.+.+.........+..++...++..-..+++..-.
T Consensus 274 ~l~-~~~~l~lvg~~~~~~~~~~~~~~~l~~E~DG~riit~~ 314 (410)
T PF04841_consen 274 VLS-WEDELLLVGPDGDSISFWYDGPVILVSEIDGVRIITST 314 (410)
T ss_pred EEE-eCCEEEEECCCCCceEEeccCceEEeccCCceEEEeCC
Confidence 333 35556666555555555555554444433335655443
No 347
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.83 E-value=0.014 Score=71.12 Aligned_cols=283 Identities=13% Similarity=0.114 Sum_probs=162.4
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEEccCCCC------E--EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC
Q 000936 63 QPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDY------I--RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH 134 (1219)
Q Consensus 63 ~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~------I--~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h 134 (1219)
+..+..++.++.+.-.|..+|+.+.+....... + ..+... ++..++.++.++.|.-+|.++|+.+......
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 345667777899999999999988776533220 0 011111 2257888888999999999999998877643
Q ss_pred CCC-----eE-EEEEecCCCEEEEEE---------CCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEE
Q 000936 135 NHY-----VM-CASFHPKEDLVVSAS---------LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV 199 (1219)
Q Consensus 135 ~~~-----V~-~l~~sp~~~~l~s~s---------~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1219)
... +. +..+. +..++.++ .+|.+..+|..+++..-.......... ....++. .. .
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~---~~~~~~~---~~--~ 209 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPN---AFPTWGP---DR--Q 209 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcC---CCCCCCC---Cc--c
Confidence 321 11 11222 24555554 367888889888765432111000000 0000000 00 0
Q ss_pred EeecCCC-e-EEEEEcCCCCEEEEEeCCC------------------eEEEEECCCCCeeeEEeecCCCC----CeEEEE
Q 000936 200 LEGHDRG-V-NWAAFHPTLPLIVSGADDR------------------QVKLWRMNETKAWEVDTLRGHMN----NVSCVM 255 (1219)
Q Consensus 200 ~~~~~~~-V-~~l~~sp~g~~l~sg~~dg------------------~I~iwd~~~~~~~~~~~~~~h~~----~I~~l~ 255 (1219)
...+.++ + ...++.+.+..++.++.++ .|.-+|..+++..-......|.. ......
T Consensus 210 ~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~ 289 (488)
T cd00216 210 MWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPS 289 (488)
T ss_pred eecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCe
Confidence 0011111 1 1345555566777776655 68888988887622222222211 000011
Q ss_pred Ec----cCCC---EEEEEeCCCcEEEEeCCCCeeEEEEecC-------CCCEEEEE----------------EeCCCCEE
Q 000936 256 FH----AKQD---IIVSNSEDKSIRVWDVTKRTGVQTFRRE-------HDRFWILA----------------SHPEMNLL 305 (1219)
Q Consensus 256 ~s----p~g~---~L~s~s~dg~I~iwdl~~~~~~~~~~~~-------~~~i~~l~----------------~sp~~~~l 305 (1219)
+. -++. .++.++.+|.+...|..+++.+...... .+.+..-. -.+++.+.
T Consensus 290 ~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~ 369 (488)
T cd00216 290 LADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLA 369 (488)
T ss_pred EEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceEEEccccccccCcccccCCCCCCCceEEE
Confidence 11 1333 6788889999999999999988765421 11111111 01345666
Q ss_pred EEEeCCCeeEEEecCC---------cc----eEEecCCEEEEE-eCCeEEEEEecCCcceeeEee
Q 000936 306 AAGHDSGMIVFKLERE---------RP----AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPI 356 (1219)
Q Consensus 306 a~g~d~gi~v~~l~~~---------~~----~~s~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~ 356 (1219)
+.-..+|-.+|..... .+ .....++.++++ .++.++.+|..+|+.+-...+
T Consensus 370 AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 370 ALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred EEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 7666788889988765 11 234567788887 899999999999988665554
No 348
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.78 E-value=0.018 Score=70.14 Aligned_cols=250 Identities=10% Similarity=0.083 Sum_probs=142.5
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEecccCCC-----E-EEEEEecCCCEEEEEE---------CCCeEEEEEcCCCeEE
Q 000936 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGP-----V-RGVHFHKSQPLFVSGG---------DDYKIKVWNYKMHRCL 86 (1219)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~-----V-~~l~fsp~~~~Lasgs---------~Dg~I~vWd~~~~~~~ 86 (1219)
..+++++.+|.|.-+|.++|+.+.++...... + .+..+. +..++.++ .++.+...|..+|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 67888888999999999999999887543221 1 111222 23455553 3678999999999988
Q ss_pred EEEccCCCC--------------------E-EEEEEcCCCCEEEEEECCC------------------eEEEEECCCCeE
Q 000936 87 FTLLGHLDY--------------------I-RTVQFHHEYPWIVSASDDQ------------------TIRIWNWQSRTC 127 (1219)
Q Consensus 87 ~~l~~h~~~--------------------I-~~l~fs~d~~~l~s~s~Dg------------------~I~iwd~~s~~~ 127 (1219)
..+...... + ....+.+.+..++.++.++ .|.-+|..+|+.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 877532110 1 1234444556777776655 799999999999
Q ss_pred EEEEecCCCCeE------EEEEe----cCCC---EEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccc
Q 000936 128 ISVLTGHNHYVM------CASFH----PKED---LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDA 194 (1219)
Q Consensus 128 i~~~~~h~~~V~------~l~~s----p~~~---~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1219)
...+..-..... ...+. -++. .++.++.+|.+...|..+++..-.....
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------------------ 330 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------------------ 330 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------------------
Confidence 887642111110 01111 1232 6788888999999999887654221100
Q ss_pred eEEEEEeecCCCeEEEEEcCCCCEEEE------------------EeCCCeEEEEECCCCCeeeEEeecCCC------CC
Q 000936 195 VVKYVLEGHDRGVNWAAFHPTLPLIVS------------------GADDRQVKLWRMNETKAWEVDTLRGHM------NN 250 (1219)
Q Consensus 195 ~~~~~~~~~~~~V~~l~~sp~g~~l~s------------------g~~dg~I~iwd~~~~~~~~~~~~~~h~------~~ 250 (1219)
...++.+| ..+.. ...+|.+.-.|..+++..-......+. .+
T Consensus 331 ------------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~ 396 (488)
T cd00216 331 ------------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFP 396 (488)
T ss_pred ------------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCc
Confidence 00011111 11111 123455666666655541111111110 11
Q ss_pred e--EEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEE--EEEeCCCCEEEEE
Q 000936 251 V--SCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWI--LASHPEMNLLAAG 308 (1219)
Q Consensus 251 I--~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~--l~~sp~~~~la~g 308 (1219)
. ..+.. .+..+++++.||.++.+|..+|+.+..++.. ..+.. +.+..++++.+..
T Consensus 397 ~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~-~~~~a~P~~~~~~g~~yv~~ 455 (488)
T cd00216 397 HWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRTP-SGIQATPMTYEVNGKQYVGV 455 (488)
T ss_pred ccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEECC-CCceEcCEEEEeCCEEEEEE
Confidence 1 11222 4678899999999999999999999887753 33322 2334455544433
No 349
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.77 E-value=0.019 Score=64.35 Aligned_cols=251 Identities=12% Similarity=0.176 Sum_probs=137.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEe---cCC
Q 000936 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR---REH 290 (1219)
Q Consensus 214 p~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~---~~~ 290 (1219)
..++.|+.|+++| +.+++...... ..... +..+|..+...|+-+.+++-+ |+.++++++..-....... ...
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~--~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK--PTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc--ceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 3567899999988 89999833222 11111 223499999999888777765 4999999988654433211 000
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCc--c-eeeEeecCCCCCCCCCC
Q 000936 291 DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQK--D-TQVIPIRRPGSTSLNQS 367 (1219)
Q Consensus 291 ~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~--~-~~~~~~~~~~~~~~~~~ 367 (1219)
..... .......++..|... ........++++..+.+.+|.+.... . .....+.- ...
T Consensus 80 ~~~~~---------~~~~~~~~v~~f~~~----~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l------p~~ 140 (275)
T PF00780_consen 80 SRSLP---------TKLPETKGVSFFAVN----GGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL------PDP 140 (275)
T ss_pred ccccc---------ccccccCCeeEEeec----cccccceEEEEEECCEEEEEEEECCcccccceeEEEEc------CCC
Confidence 00000 000011111111100 00011223444466688888777631 1 12222222 128
Q ss_pred CeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccc--------cCceeEEEEEeCCeEEEEEcCCCEEEEE
Q 000936 368 PRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAK--------KGLGGSAIFIARNRFAVLDKSSNQVLVK 439 (1219)
Q Consensus 368 i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~--------~~~i~~~~fs~d~~~l~~~~~dg~I~Iw 439 (1219)
+.+++|. ++.++++.. ..+.+.++.......+....... ......+.-.+++.+|+.-. ..-.+.
T Consensus 141 ~~~i~~~--~~~i~v~~~---~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~--~~g~fv 213 (275)
T PF00780_consen 141 PSSIAFL--GNKICVGTS---KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYD--NIGVFV 213 (275)
T ss_pred cEEEEEe--CCEEEEEeC---CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEec--ceEEEE
Confidence 8899998 456666655 56888888854433222111100 11122233334567776543 455556
Q ss_pred ecCCceeE--eeeCCcceEEEEEeCCCcEEEEeCCeEEEEEcCCCeEEEEEecCCeeEE
Q 000936 440 NLKNEVVK--KSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTPFVKYV 496 (1219)
Q Consensus 440 dl~~~~~~--~i~~~~~v~~l~~s~dg~~L~s~d~~I~l~dl~~~~~l~~~~~~~v~~v 496 (1219)
|..|+..+ .+.-...+..+.+... -+++..++.|.||++.++++++.+....++.+
T Consensus 214 ~~~G~~~r~~~i~W~~~p~~~~~~~p-yli~~~~~~iEV~~~~~~~lvQ~i~~~~~~~l 271 (275)
T PF00780_consen 214 NKNGEPSRKSTIQWSSAPQSVAYSSP-YLIAFSSNSIEVRSLETGELVQTIPLPNIRLL 271 (275)
T ss_pred cCCCCcCcccEEEcCCchhEEEEECC-EEEEECCCEEEEEECcCCcEEEEEECCCEEEE
Confidence 66665444 4554556667776444 34456788899999999999999887655443
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.77 E-value=0.0053 Score=66.37 Aligned_cols=208 Identities=13% Similarity=0.157 Sum_probs=118.2
Q ss_pred EEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecC-CCCeEEEEEecCCCEEEEEECCCeEEEEECC
Q 000936 88 TLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGH-NHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (1219)
Q Consensus 88 ~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~~h-~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~ 165 (1219)
.+.+-...+..++|+|+.. ++++....+.|...+. +|+.+..+.-. .+..-.+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4556666799999999866 4555556778888886 57777776533 3567889998777666666568999999885
Q ss_pred CCccccccCCccceeeccccccccccccceEEEE--E-eecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CCee
Q 000936 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV--L-EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE---TKAW 239 (1219)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~---~~~~ 239 (1219)
........ .....+. + ..+..++-.++|+|.++.|+++-+..-..+|.++. ....
T Consensus 95 ~~~~~~~~-------------------~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~ 155 (248)
T PF06977_consen 95 DDTTSLDR-------------------ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDL 155 (248)
T ss_dssp ---TT--E-------------------EEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--
T ss_pred ccccccch-------------------hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccce
Confidence 42211100 0001111 1 23556799999999988888887777677776654 2211
Q ss_pred eEEee------cCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeeEEEEecCC---------CCEEEEEEeCCCC
Q 000936 240 EVDTL------RGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKRTGVQTFRREH---------DRFWILASHPEMN 303 (1219)
Q Consensus 240 ~~~~~------~~h~~~I~~l~~sp~-g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~---------~~i~~l~~sp~~~ 303 (1219)
.+... ......++++.++|. +.+++.+.++..|..+| .+|+.+..+.-.. ...-.|++.++|+
T Consensus 156 ~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 156 FVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred eeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 11111 224456899999995 55667777888899999 6677776655433 2467899999999
Q ss_pred EEEEEeCCCeeEE
Q 000936 304 LLAAGHDSGMIVF 316 (1219)
Q Consensus 304 ~la~g~d~gi~v~ 316 (1219)
+.+++..+-+++|
T Consensus 235 LYIvsEpNlfy~f 247 (248)
T PF06977_consen 235 LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTEEEEE
T ss_pred EEEEcCCceEEEe
Confidence 8888765544443
No 351
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.74 E-value=0.031 Score=62.08 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=41.4
Q ss_pred EEEEEecC-CceeEeeeCCcceEEEEEeCCCc-EEE-Ee--CCeEEEEEcCCCeEEEEEec
Q 000936 435 QVLVKNLK-NEVVKKSILPIAADAIFYAGTGN-LLC-RA--EDRVVIFDLQQRLVLGDLQT 490 (1219)
Q Consensus 435 ~I~Iwdl~-~~~~~~i~~~~~v~~l~~s~dg~-~L~-s~--d~~I~l~dl~~~~~l~~~~~ 490 (1219)
.|.++|++ .+.+.++....++.+|..+.+.+ +|. .. ++.+.+||..+|+.++++..
T Consensus 270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 46677777 67888888777889999999865 443 22 68899999999999988875
No 352
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.74 E-value=0.00069 Score=79.53 Aligned_cols=164 Identities=13% Similarity=0.189 Sum_probs=110.0
Q ss_pred CeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeE
Q 000936 338 RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGS 417 (1219)
Q Consensus 338 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~ 417 (1219)
..+.++++.+++...+..... .-...+|+|||+.++++.. .+|...||.++..... .. .+....+.-+.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g--------~~~~P~fspDG~~l~f~~~-rdg~~~iy~~dl~~~~-~~-~Lt~~~gi~~~ 286 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNG--------NNGAPAFSPDGSKLAFSSS-RDGSPDIYLMDLDGKN-LP-RLTNGFGINTS 286 (425)
T ss_pred ceEEEEeccCCccceeeccCC--------ccCCccCCCCCCEEEEEEC-CCCCccEEEEcCCCCc-ce-ecccCCccccC
Confidence 468889999988776666443 3344789999999988877 4467777766544322 11 23333333447
Q ss_pred EEEEeCCeEEEEEcCC-C--EEEEEecCCceeEeeeCCc-ceEEEEEeCCCcEEEEe---CCe--EEEEEcCCCeEEEEE
Q 000936 418 AIFIARNRFAVLDKSS-N--QVLVKNLKNEVVKKSILPI-AADAIFYAGTGNLLCRA---EDR--VVIFDLQQRLVLGDL 488 (1219)
Q Consensus 418 ~~fs~d~~~l~~~~~d-g--~I~Iwdl~~~~~~~i~~~~-~v~~l~~s~dg~~L~s~---d~~--I~l~dl~~~~~l~~~ 488 (1219)
-.|+|||+.++..++. | .|.+++.++.....+.... .-..-.+||||++++.. +|. |.++|+.++..++.+
T Consensus 287 Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 287 PSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred ccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 8899999988887632 3 4777777776666665554 22366799999999774 344 788888777755555
Q ss_pred ec-CCeeEEEEcCCCCEEEEEeCCe
Q 000936 489 QT-PFVKYVVWSNDMESVALLSKHA 512 (1219)
Q Consensus 489 ~~-~~v~~v~ws~dg~~la~~s~~~ 512 (1219)
.. .....-.|.++|+++...+...
T Consensus 367 t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 367 TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred cccccCCCCCcCCCCceEEEeccCC
Confidence 44 3344668899999887766543
No 353
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.70 E-value=0.0076 Score=72.03 Aligned_cols=234 Identities=7% Similarity=0.033 Sum_probs=138.2
Q ss_pred CCCEEEEEeC-CCcEEEEeCCCCeeEEEEecCC-CCEEEEEEe--CCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEE
Q 000936 259 KQDIIVSNSE-DKSIRVWDVTKRTGVQTFRREH-DRFWILASH--PEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFY 334 (1219)
Q Consensus 259 ~g~~L~s~s~-dg~I~iwdl~~~~~~~~~~~~~-~~i~~l~~s--p~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~ 334 (1219)
||++|+.... +..|..-++...++-+.+...+ ..+..+.+- |+..++.+++.-. ..+..+|..+..
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~----------~PlpnDGk~l~~ 209 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFR----------IPLPNDGKDLDD 209 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccc----------cccCCCCCEeec
Confidence 6778888764 4556666666555544433222 223344443 6666666554322 233345544433
Q ss_pred E--eCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEe--CCCCEEEEEEecCCCCCCCcccccc
Q 000936 335 A--KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSD--VDGGSYELYVIPKDSIGRGDSVQDA 410 (1219)
Q Consensus 335 ~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~--~~dg~i~l~~~~~~~~~~~~~~~~~ 410 (1219)
. ..+.+.+.|..+.+......+.. ....+.++|+|+++.+++- ..+.++...+... ...+. .+..
T Consensus 210 ~~ey~~~vSvID~etmeV~~qV~Vdg--------npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e--~d~~v-vfni 278 (635)
T PRK02888 210 PKKYRSLFTAVDAETMEVAWQVMVDG--------NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE--RDWVV-VFNI 278 (635)
T ss_pred ccceeEEEEEEECccceEEEEEEeCC--------CcccceECCCCCEEEEeccCcccCcceeeecccc--CceEE-EEch
Confidence 3 56777788877655433333322 5567899999999887752 1222332222111 00000 0000
Q ss_pred ccCceeEEEEEeCCeEEEEEcCCCEEEEEecCC------ceeEeeeCCcceEEEEEeCCCcEEEEe---CCeEEEEEcCC
Q 000936 411 KKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN------EVVKKSILPIAADAIFYAGTGNLLCRA---EDRVVIFDLQQ 481 (1219)
Q Consensus 411 ~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~------~~~~~i~~~~~v~~l~~s~dg~~L~s~---d~~I~l~dl~~ 481 (1219)
.. .-.+.++|++...+ ++.|.+.|... ..+..+..+.....+.+||||++++.+ +.++.++|+++
T Consensus 279 ~~----iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 279 AR----IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred HH----HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 00 01345678877763 57899999876 366777778899999999999999775 68999999988
Q ss_pred CeE------------EEEEec-CCeeEEEEcCCCCEEEEEe-CCeEEEEecC
Q 000936 482 RLV------------LGDLQT-PFVKYVVWSNDMESVALLS-KHAIIIASKK 519 (1219)
Q Consensus 482 ~~~------------l~~~~~-~~v~~v~ws~dg~~la~~s-~~~i~i~~~~ 519 (1219)
.+. +.+... -......|+++|....+.. +..+..|+..
T Consensus 353 ~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred hhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 663 455544 4566788888886444433 3456677644
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.68 E-value=0.029 Score=66.30 Aligned_cols=209 Identities=12% Similarity=0.077 Sum_probs=114.6
Q ss_pred EEEEeCCCCEEEEEECC----------C-eEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 000936 14 GLSFHSKRPWILASLHS----------G-VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1219)
Q Consensus 14 ~i~fspdg~~Lasg~~d----------g-~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1219)
-++.+|.|.-+|....+ . .|+||+ ..|+++.++.-..+.|.++.|+.+.. |++...||.++++|+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~- 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF- 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC-
Confidence 35667777777776443 1 599999 57778877754448999999988654 5566789999999986
Q ss_pred CeEEEEEc-------cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEecCCCCeE----------EEEEe
Q 000936 83 HRCLFTLL-------GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT-CISVLTGHNHYVM----------CASFH 144 (1219)
Q Consensus 83 ~~~~~~l~-------~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~-~i~~~~~h~~~V~----------~l~~s 144 (1219)
|+..+.+. .....+....+..+| ++.-..++.+.+.+-.... ....+..-..... ...++
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 33322221 111223333444455 3333344555444322211 1111110000000 01233
Q ss_pred cCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeC
Q 000936 145 PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (1219)
Q Consensus 145 p~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~ 224 (1219)
.+....+....++.+.+.+-...+ . ....+++..++.||+|++++.-..
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~------------------------------~-i~~~~~i~~iavSpng~~iAl~t~ 236 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFK------------------------------Q-IDSDGPIIKIAVSPNGKFIALFTD 236 (410)
T ss_pred cCcceEEEEecCCEEEEEEccccc------------------------------c-ccCCCCeEEEEECCCCCEEEEEEC
Confidence 333333444444444433321100 0 112468999999999999999999
Q ss_pred CCeEEEEECCCCCeeeEEeecC-CCCCeEEEEEccCC
Q 000936 225 DRQVKLWRMNETKAWEVDTLRG-HMNNVSCVMFHAKQ 260 (1219)
Q Consensus 225 dg~I~iwd~~~~~~~~~~~~~~-h~~~I~~l~~sp~g 260 (1219)
+|.+.+.+.+-.+. ...+.. .......+.|.-+.
T Consensus 237 ~g~l~v~ssDf~~~--~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 237 SGNLWVVSSDFSEK--LCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCCEEEEECcccce--eEEeecCcCCCCcEEEEECCC
Confidence 99999988766554 222222 23455677776554
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.055 Score=63.53 Aligned_cols=253 Identities=14% Similarity=0.099 Sum_probs=165.0
Q ss_pred CEEEEEEeCCCCEEEEEEC-CCeEEEEECCCCeEEEEecccCCCEEEEEEecCCC-EEEEEECCCeEEEEEcCCCeEEEE
Q 000936 11 RVKGLSFHSKRPWILASLH-SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLFT 88 (1219)
Q Consensus 11 ~V~~i~fspdg~~Lasg~~-dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~~~~ 88 (1219)
....+.+.|++..+.+... ...+..-+............-...-.+++.++.++ ..++...+..|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 4567788888865555432 22455555442222221111113345778888887 455555668999999887777766
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEE-CCCeEEEEEC
Q 000936 89 LLGHLDYIRTVQFHHEYPWIVSASD---DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDI 164 (1219)
Q Consensus 89 l~~h~~~I~~l~fs~d~~~l~s~s~---Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~I~vwd~ 164 (1219)
...-. ....++++++++.+..+.. ++++.+.|-.+++.+.....-..+ ..+++.|+|..++... .++.|.+.|.
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~ 189 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT 189 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeC
Confidence 64322 6688999999987777665 689999999999888876544444 8899999998665554 7899999997
Q ss_pred CCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCeeeE
Q 000936 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQVKLWRMNETKAWEV 241 (1219)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~d---g~I~iwd~~~~~~~~~ 241 (1219)
.+..... .... ....-...-..+.++|+|..+.+.... +.+...|..+......
T Consensus 190 ~~~~v~~-~~~~----------------------~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 190 SGNSVVR-GSVG----------------------SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCcceec-cccc----------------------cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 6643321 0000 011122334568899999866655443 5888999888775222
Q ss_pred EeecCCCCCeEEEEEccCCCEEEEEeCC-CcEEEEeCCCCeeEEEEecC
Q 000936 242 DTLRGHMNNVSCVMFHAKQDIIVSNSED-KSIRVWDVTKRTGVQTFRRE 289 (1219)
Q Consensus 242 ~~~~~h~~~I~~l~~sp~g~~L~s~s~d-g~I~iwdl~~~~~~~~~~~~ 289 (1219)
....+.. ....+..+|+|..+.+.... +.+.+-|..+......+...
T Consensus 247 ~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 247 DLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred ccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 1122222 45678999999998887544 78888888877766655433
No 356
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.59 E-value=0.034 Score=62.28 Aligned_cols=241 Identities=12% Similarity=0.102 Sum_probs=136.3
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE----------
Q 000936 19 SKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT---------- 88 (1219)
Q Consensus 19 pdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~---------- 88 (1219)
..+++|++|+.+| +.+++........... +..+|..+...|+-+.|++-++ +.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEcC-CccEEEEchhhccccccccccccccc
Confidence 4578999999999 8999983333222221 3334999999998887777654 8999999865433321
Q ss_pred ----EccCCCCEEEEE--EcCCCCEEEEEECCCeEEEEECCCC-----eEEEEEecCCCCeEEEEEecCCCEEEEEECCC
Q 000936 89 ----LLGHLDYIRTVQ--FHHEYPWIVSASDDQTIRIWNWQSR-----TCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (1219)
Q Consensus 89 ----l~~h~~~I~~l~--fs~d~~~l~s~s~Dg~I~iwd~~s~-----~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg 157 (1219)
.......+...+ -...+...+.......|.+|.+... +....+. -...+.+++|. ++.++.|..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~- 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK- 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-
Confidence 111223344444 1123333334444568999988753 3445555 34778899998 5678877754
Q ss_pred eEEEEECCCCccccccCCccceeeccccccccccccceEE-EEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000936 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVK-YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236 (1219)
Q Consensus 158 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~ 236 (1219)
...+.|+.++.......... .... ........++..+... ++.+|++. |..-.+.|..+.
T Consensus 158 ~f~~idl~~~~~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~ 218 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSD----------------SSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGE 218 (275)
T ss_pred ceEEEecCCCCceEEeCccC----------------CcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCC
Confidence 47888988654432211000 0000 0011112233333333 34555543 333344444433
Q ss_pred CeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCC
Q 000936 237 KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH 290 (1219)
Q Consensus 237 ~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~ 290 (1219)
.. ....+... ..+.++.+. ..+|++.+.+ .|.||++.+++.++++...+
T Consensus 219 ~~-r~~~i~W~-~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 219 PS-RKSTIQWS-SAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred cC-cccEEEcC-CchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECCC
Confidence 22 11233332 345566663 4577777664 59999999999999887543
No 357
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.58 E-value=0.0041 Score=73.13 Aligned_cols=194 Identities=12% Similarity=0.107 Sum_probs=116.5
Q ss_pred eecCCCCCeEEEEEccCCCEEEEEe---CC-CcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEe
Q 000936 243 TLRGHMNNVSCVMFHAKQDIIVSNS---ED-KSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1219)
Q Consensus 243 ~~~~h~~~I~~l~~sp~g~~L~s~s---~d-g~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l 318 (1219)
.+......+..-.|+|++..++..+ .. ..+.++++.++....... ..+.-..-+|+|||+.++..+...
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rd------ 259 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRD------ 259 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCC------
Confidence 3333445566778999988765442 22 458899998876654433 223334567888888877665322
Q ss_pred cCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecC
Q 000936 319 ERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1219)
Q Consensus 319 ~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~ 398 (1219)
..-.|.++|+.++.... +.... +.-+.-.|+|||++++.+++ .+|.-.||..+.
T Consensus 260 -----------------g~~~iy~~dl~~~~~~~---Lt~~~-----gi~~~Ps~spdG~~ivf~Sd-r~G~p~I~~~~~ 313 (425)
T COG0823 260 -----------------GSPDIYLMDLDGKNLPR---LTNGF-----GINTSPSWSPDGSKIVFTSD-RGGRPQIYLYDL 313 (425)
T ss_pred -----------------CCccEEEEcCCCCccee---cccCC-----ccccCccCCCCCCEEEEEeC-CCCCcceEEECC
Confidence 13356677777665322 22111 12236789999999998876 555657776655
Q ss_pred CCCCCCccccccccCceeEEEEEeCCeEEEEEcCC-CE--EEEEecCCce-eEeeeCCcceEEEEEeCCCcEEEEeC
Q 000936 399 DSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSS-NQ--VLVKNLKNEV-VKKSILPIAADAIFYAGTGNLLCRAE 471 (1219)
Q Consensus 399 ~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~d-g~--I~Iwdl~~~~-~~~i~~~~~v~~l~~s~dg~~L~s~d 471 (1219)
+...... .....+.-....|+|||++++..+.. |. |.+.|+.+.. .+.+........-.++++|+.+....
T Consensus 314 ~g~~~~r--iT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 314 EGSQVTR--LTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCceeE--eeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEec
Confidence 4322211 11122222268899999998887743 43 6667776332 55555444556677889998887653
No 358
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.52 E-value=0.05 Score=58.95 Aligned_cols=210 Identities=15% Similarity=0.206 Sum_probs=109.4
Q ss_pred EeecCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeeEEEEecCC-CCEEEEEEeCCCCEEEEEe-CCCeeEEEe
Q 000936 242 DTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRTGVQTFRREH-DRFWILASHPEMNLLAAGH-DSGMIVFKL 318 (1219)
Q Consensus 242 ~~~~~h~~~I~~l~~sp~g~-~L~s~s~dg~I~iwdl~~~~~~~~~~~~~-~~i~~l~~sp~~~~la~g~-d~gi~v~~l 318 (1219)
..+.+-...++.++|.|+.+ ++++..+.+.|..++. +|+.+..+.... +..-.+++..++.++++.. ...++++.+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 35666667799999999755 6667777888888886 577777776543 4577788877776555442 222333333
Q ss_pred cCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecC
Q 000936 319 ERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1219)
Q Consensus 319 ~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~ 398 (1219)
.... ..+..-+ ...+.+..... . +..+-.++|+|.++.++++-. ..-..+|.+..
T Consensus 94 ~~~~---------------~~~~~~~------~~~~~l~~~~~-~-N~G~EGla~D~~~~~L~v~kE--~~P~~l~~~~~ 148 (248)
T PF06977_consen 94 DDDT---------------TSLDRAD------VQKISLGFPNK-G-NKGFEGLAYDPKTNRLFVAKE--RKPKRLYEVNG 148 (248)
T ss_dssp -------------------TT--EEE------EEEEE---S-----SS--EEEEEETTTTEEEEEEE--SSSEEEEEEES
T ss_pred eccc---------------cccchhh------ceEEecccccC-C-CcceEEEEEcCCCCEEEEEeC--CCChhhEEEcc
Confidence 2111 0011100 01111111100 1 236889999999888887755 33455777664
Q ss_pred CCCCCCc--------cccccccCceeEEEEEeC-CeEEEEEcCCCEEEEEecCCceeEeeeCCc----------ceEEEE
Q 000936 399 DSIGRGD--------SVQDAKKGLGGSAIFIAR-NRFAVLDKSSNQVLVKNLKNEVVKKSILPI----------AADAIF 459 (1219)
Q Consensus 399 ~~~~~~~--------~~~~~~~~~i~~~~fs~d-~~~l~~~~~dg~I~Iwdl~~~~~~~i~~~~----------~v~~l~ 459 (1219)
....... ...........++.+.|. |++++.+..+..|.++|.+++.+..+.... ....|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa 228 (248)
T PF06977_consen 149 FPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIA 228 (248)
T ss_dssp TT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEE
T ss_pred ccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEE
Confidence 1110000 001122234677888877 588888888999999998888776665432 577888
Q ss_pred EeCCCcEEEEeC-CeEEEE
Q 000936 460 YAGTGNLLCRAE-DRVVIF 477 (1219)
Q Consensus 460 ~s~dg~~L~s~d-~~I~l~ 477 (1219)
|.++|++.+++. +..++|
T Consensus 229 ~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 229 FDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp E-TT--EEEEETTTEEEEE
T ss_pred ECCCCCEEEEcCCceEEEe
Confidence 888888887764 444443
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.50 E-value=0.13 Score=61.48 Aligned_cols=243 Identities=12% Similarity=0.116 Sum_probs=128.9
Q ss_pred CEEEEEEeCCCCEEEEEE-CCC----eEEEEECCCCeEEEEe-cccCCCEEEEEEecCCCEEEEEEC-----------CC
Q 000936 11 RVKGLSFHSKRPWILASL-HSG----VIQLWDYRMGTLIDRF-DEHDGPVRGVHFHKSQPLFVSGGD-----------DY 73 (1219)
Q Consensus 11 ~V~~i~fspdg~~Lasg~-~dg----~I~iWd~~~g~~i~~l-~~h~~~V~~l~fsp~~~~Lasgs~-----------Dg 73 (1219)
.+..+++||||+++|.+. ..| .|+++|+.+|+.+... .... -..+.|.++++.|+.... ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 344688999999999773 334 4999999999876532 2211 234999999887665542 23
Q ss_pred eEEEEEcCCCe----EEEEEccCCCCEEEEEEcCCCCEEEEEECC----CeEEEEECCCC----eEEEEEecCCCCeEEE
Q 000936 74 KIKVWNYKMHR----CLFTLLGHLDYIRTVQFHHEYPWIVSASDD----QTIRIWNWQSR----TCISVLTGHNHYVMCA 141 (1219)
Q Consensus 74 ~I~vWd~~~~~----~~~~l~~h~~~I~~l~fs~d~~~l~s~s~D----g~I~iwd~~s~----~~i~~~~~h~~~V~~l 141 (1219)
.|+.|.+.+.. .++.-..+......+..++|+++++..+.. ..+.+.+...+ .....+..+...+...
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 47888876552 344333232236788999999987754332 35778888764 2333333333334333
Q ss_pred EEecCCCEEEEEEC---CCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCC--eEEEEEcCCC
Q 000936 142 SFHPKEDLVVSASL---DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG--VNWAAFHPTL 216 (1219)
Q Consensus 142 ~~sp~~~~l~s~s~---dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--V~~l~~sp~g 216 (1219)
.-+..+.+++.... .+.|...++....... ....+..+... +..+.. .+
T Consensus 283 v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~------------------------~~~~l~~~~~~~~l~~~~~--~~ 336 (414)
T PF02897_consen 283 VDHHGDRLYILTNDDAPNGRLVAVDLADPSPAE------------------------WWTVLIPEDEDVSLEDVSL--FK 336 (414)
T ss_dssp EEEETTEEEEEE-TT-TT-EEEEEETTSTSGGG------------------------EEEEEE--SSSEEEEEEEE--ET
T ss_pred EEccCCEEEEeeCCCCCCcEEEEeccccccccc------------------------ceeEEcCCCCceeEEEEEE--EC
Confidence 33333334433322 3456666665533210 11133344443 444443 33
Q ss_pred CEE-EEEeCCC--eEEEEECC-CCCeeeEEeecCCCCCeEEEEEccCCCEEEEE-e---CCCcEEEEeCCCCeeE
Q 000936 217 PLI-VSGADDR--QVKLWRMN-ETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN-S---EDKSIRVWDVTKRTGV 283 (1219)
Q Consensus 217 ~~l-~sg~~dg--~I~iwd~~-~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~-s---~dg~I~iwdl~~~~~~ 283 (1219)
.+| +....++ .|+++++. +.... ...+. -.+.|..+...++++.+... + .-+++..||+.+++..
T Consensus 337 ~~Lvl~~~~~~~~~l~v~~~~~~~~~~-~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 337 DYLVLSYRENGSSRLRVYDLDDGKESR-EIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp TEEEEEEEETTEEEEEEEETT-TEEEE-EEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CEEEEEEEECCccEEEEEECCCCcEEe-eecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 444 4444444 57788888 33321 12222 23445666655655544322 2 1256888888887653
No 360
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.15 Score=61.13 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=68.1
Q ss_pred HhhcCCHHHHHHHHHHhCChh-----HHHHHHHHHHHc---CChhHHHHHHHhhcC--cchhhHHHHh-----cCCHHHH
Q 000936 654 ALESGNIQIAVASAKEIDEKD-----HWYRLGVEALRQ---GNAGIVEYAYQRTKN--FERLSFLYLI-----TGNMDKL 718 (1219)
Q Consensus 654 al~~g~~~~A~~~a~~l~~~~-----~w~~La~~al~~---g~~~~Ae~~y~~~~d--~~~l~~l~~~-----~g~~~~l 718 (1219)
.+..+.+.+|.+.|+-++-+. .+..+|+...++ .+-+.+...=++.++ .+.+++...+ .|..+-+
T Consensus 447 l~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA 526 (829)
T KOG2280|consen 447 LVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELA 526 (829)
T ss_pred HHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHH
Confidence 455688999999999877665 667889888888 445577777788888 6666666333 4555555
Q ss_pred HHHHHHHHHcCChhHHHHHHHhcCCHHHHHHHHHHcCCChHHHHH
Q 000936 719 SKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYIT 763 (1219)
Q Consensus 719 ~kl~~~~~~~~~~~~~~~~al~lgd~~eai~i~~~~g~~~~A~~l 763 (1219)
+++.+ ...+.....-..+.+++++.|.+-..++|+.++-+..
T Consensus 527 ~kLle---~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~V 568 (829)
T KOG2280|consen 527 RKLLE---LEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQV 568 (829)
T ss_pred HHHHh---cCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHH
Confidence 55443 2222222233355556666666666666666655544
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.46 E-value=0.015 Score=67.72 Aligned_cols=289 Identities=11% Similarity=0.116 Sum_probs=132.2
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC--------
Q 000936 53 PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-------- 124 (1219)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s-------- 124 (1219)
.|+.+.|.++..-|++|...|.|.||.+...+... ......-....|.+-+ ..++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~------~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS------LNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc------ccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999876433221 0000111111111100 0011122223321
Q ss_pred -CeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeec
Q 000936 125 -RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH 203 (1219)
Q Consensus 125 -~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1219)
-.+...+....++|++++.+ +=.+++.|+.+|.+.|.|+++........... .......
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-------------------~~~~~~~ 134 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-------------------SFLSKSS 134 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---------------------T-SS-
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-------------------ccccccc
Confidence 12344455568899999997 44599999999999999998865432211000 0000112
Q ss_pred CCCeEEEEEc-----CCC---CEEEEEeCCCeEEEEECC--CCCeeeE---EeecCCCCCeEEEE-EccC-C--------
Q 000936 204 DRGVNWAAFH-----PTL---PLIVSGADDRQVKLWRMN--ETKAWEV---DTLRGHMNNVSCVM-FHAK-Q-------- 260 (1219)
Q Consensus 204 ~~~V~~l~~s-----p~g---~~l~sg~~dg~I~iwd~~--~~~~~~~---~~~~~h~~~I~~l~-~sp~-g-------- 260 (1219)
...++++.|. .|+ ..+++|+..|.+.+|.+. ....+.+ .....+.++|..+. ++.+ |
T Consensus 135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~ 214 (395)
T PF08596_consen 135 SSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATIS 214 (395)
T ss_dssp ---EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHH
T ss_pred ccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchh
Confidence 2345556554 233 478899999999999775 2222222 12224556655554 3221 1
Q ss_pred ------------CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEec
Q 000936 261 ------------DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVS 328 (1219)
Q Consensus 261 ------------~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~ 328 (1219)
.+++++ .+..++++...+.+..+......-....+.+-+-. . ...
T Consensus 215 ~~~~l~~g~~i~g~vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~-----------------~-----~~~ 271 (395)
T PF08596_consen 215 AMQGLSKGISIPGYVVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTI-----------------S-----RNG 271 (395)
T ss_dssp HHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-----------------------EEE
T ss_pred HhhccccCCCcCcEEEEE-cccceEEEeCCCCcccceeeccccccceEEEEeec-----------------c-----cCC
Confidence 134444 45679999888776655443111111112221100 0 011
Q ss_pred CCEEEEE-eCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecC
Q 000936 329 GDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1219)
Q Consensus 329 ~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~ 398 (1219)
+..|+.. .+|.+++|.+..-+.+....+....... .....+++++|..++..+. ..+.++.+-.
T Consensus 272 ~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~---~~~~ssis~~Gdi~~~~gp---sE~~l~sv~~ 336 (395)
T PF08596_consen 272 GYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR---RLSSSSISRNGDIFYWTGP---SEIQLFSVWG 336 (395)
T ss_dssp EEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH---HHTT-EE-TTS-EEEE-SS---SEEEEEEEES
T ss_pred ceEEEEEECCCcEEEEECCCchHhhcccCCCccccc---cccccEECCCCCEEEEeCc---ccEEEEEEEc
Confidence 1222222 7889999998886665555553322111 4455778999996655544 4555555543
No 362
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.44 E-value=0.032 Score=64.08 Aligned_cols=214 Identities=15% Similarity=0.158 Sum_probs=124.8
Q ss_pred CeEEEEECCCCeEEEEecc-cCCCEEEEE---EecC----CCEEEEEEC----------CCeEEEEEcCCC----eEEEE
Q 000936 31 GVIQLWDYRMGTLIDRFDE-HDGPVRGVH---FHKS----QPLFVSGGD----------DYKIKVWNYKMH----RCLFT 88 (1219)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~-h~~~V~~l~---fsp~----~~~Lasgs~----------Dg~I~vWd~~~~----~~~~~ 88 (1219)
+.|++.|..+.+.+.++.- ....+.+++ +..+ .+++++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4689999888888876642 222344443 3332 468888753 289999999874 12222
Q ss_pred E--ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEe-cCCCCeEEEEEecCCCEEEEEECCCeEEEEEC
Q 000936 89 L--LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT-CISVLT-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (1219)
Q Consensus 89 l--~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~-~i~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~ 164 (1219)
+ ....++|++++-. ++ +|+.+. ++.|.+|++...+ ....-. .....+.++... ++++++|+....+.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 1 2357889998777 33 455544 5889999998777 443332 233356666655 679999999888888754
Q ss_pred CCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------
Q 000936 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-------- 236 (1219)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~-------- 236 (1219)
+..... .....-......++++.+-++++.++.+..+|.+.++..+..
T Consensus 157 ~~~~~~------------------------l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 157 DEENNK------------------------LILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp ETTTE-------------------------EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTT
T ss_pred EccCCE------------------------EEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccccccc
Confidence 431100 011122223456888888877679999999999999987632
Q ss_pred -CeeeEEeecCCCCCeEEE---EEcc--CCC------EEEEEeCCCcEEE
Q 000936 237 -KAWEVDTLRGHMNNVSCV---MFHA--KQD------IIVSNSEDKSIRV 274 (1219)
Q Consensus 237 -~~~~~~~~~~h~~~I~~l---~~sp--~g~------~L~s~s~dg~I~i 274 (1219)
+......+ .....|+++ .+.| .+. .++.++.+|.|-+
T Consensus 213 ~~L~~~~~f-~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 213 PKLERISSF-HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TBEEEEEEE-E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccceeEEEE-ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 22112222 223456666 4444 121 3677777887763
No 363
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.38 E-value=5e-05 Score=87.38 Aligned_cols=204 Identities=16% Similarity=0.229 Sum_probs=132.0
Q ss_pred cCCCEEEEEEeC--CCCEEEEEECCCeEEEEECCCCeE--EEEecccCCCEEEEEEec-CCCEEEEEE----CCCeEEEE
Q 000936 8 KSNRVKGLSFHS--KRPWILASLHSGVIQLWDYRMGTL--IDRFDEHDGPVRGVHFHK-SQPLFVSGG----DDYKIKVW 78 (1219)
Q Consensus 8 h~~~V~~i~fsp--dg~~Lasg~~dg~I~iWd~~~g~~--i~~l~~h~~~V~~l~fsp-~~~~Lasgs----~Dg~I~vW 78 (1219)
....+.|++++- +...+++|..+|.|-+-..+...- -....+|..+.++++|++ |...||.|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 345688888755 456889999999999988765422 223457888999999998 556777773 36789999
Q ss_pred EcCCC--eEE--EEEc-cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEec-CCCEEEE
Q 000936 79 NYKMH--RCL--FTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-KEDLVVS 152 (1219)
Q Consensus 79 d~~~~--~~~--~~l~-~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp-~~~~l~s 152 (1219)
|+.++ .+. ..+. +......+++|-.+.+.+.+|.....+.++|++.. +.....-.+..+..+...| .++++++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCceec
Confidence 99876 111 1122 23445668999989899999999999999998622 1112222334566677888 6677777
Q ss_pred EECCCeEEEEEC-CCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCC--EEEEEeCCCeEE
Q 000936 153 ASLDQTVRVWDI-GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP--LIVSGADDRQVK 229 (1219)
Q Consensus 153 ~s~dg~I~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~--~l~sg~~dg~I~ 229 (1219)
-+ ||.|.+||. +.-+..... + ..........+..++|+|... ..+..-+.++|+
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~--------------i--------~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIr 270 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQI--------------I--------LRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIR 270 (783)
T ss_pred cc-cCceeeccchhhhccHHHH--------------H--------hhCCCCcccceeeEEeccCCcchhhhhccCcceEE
Confidence 66 999999994 322211000 0 000011123578899999543 333344567888
Q ss_pred EEECCC
Q 000936 230 LWRMNE 235 (1219)
Q Consensus 230 iwd~~~ 235 (1219)
++++..
T Consensus 271 lydi~~ 276 (783)
T KOG1008|consen 271 LYDICV 276 (783)
T ss_pred Eecccc
Confidence 888753
No 364
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.36 E-value=0.52 Score=57.68 Aligned_cols=109 Identities=9% Similarity=0.065 Sum_probs=70.1
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEecccC-CCEE----------EEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 000936 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHD-GPVR----------GVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1219)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~-~~V~----------~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1219)
+..|.+++.++.|+-.|..+|+.+-++.... ..+. .+++ .+..++.++.|+.+.-.|.++|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777788999999999999988775321 1111 1222 2346777888999999999999998776
Q ss_pred ccC--CC--CEEEEEEcCCCCEEEEEEC------CCeEEEEECCCCeEEEEEe
Q 000936 90 LGH--LD--YIRTVQFHHEYPWIVSASD------DQTIRIWNWQSRTCISVLT 132 (1219)
Q Consensus 90 ~~h--~~--~I~~l~fs~d~~~l~s~s~------Dg~I~iwd~~s~~~i~~~~ 132 (1219)
... .. .+++--.-.++ .+++++. +|.|..+|..+|+.+..+.
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 421 10 11111011133 4554432 6899999999999887653
No 365
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.36 E-value=0.02 Score=69.42 Aligned_cols=104 Identities=12% Similarity=0.132 Sum_probs=72.1
Q ss_pred EEEEEeCCeEEEEEcCCCEEEEEecCCce-e--EeeeCCcceEEEEEe--CCCcEEEE-e-CCeEEEEEc---------C
Q 000936 417 SAIFIARNRFAVLDKSSNQVLVKNLKNEV-V--KKSILPIAADAIFYA--GTGNLLCR-A-EDRVVIFDL---------Q 480 (1219)
Q Consensus 417 ~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~-~--~~i~~~~~v~~l~~s--~dg~~L~s-~-d~~I~l~dl---------~ 480 (1219)
-+.-++-++..++.++..++.|||..+.. . ..+..+..|.++.|. |+|+.+++ + .+.|.+|-- .
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 34445567888888778899999999433 2 223334589999865 56777644 3 788888743 1
Q ss_pred CCeEEEEEec-----CCeeEEEEcCCCCEEEEEeCCeEEEEecCcc
Q 000936 481 QRLVLGDLQT-----PFVKYVVWSNDMESVALLSKHAIIIASKKLV 521 (1219)
Q Consensus 481 ~~~~l~~~~~-----~~v~~v~ws~dg~~la~~s~~~i~i~~~~l~ 521 (1219)
+...+..+.. .+|....|.+||. +++++++.++|+++.++
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sGNqlfv~dk~~~ 158 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGSGNQLFVFDKWLD 158 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCe-EEEEeCCEEEEECCCcC
Confidence 2234444432 6788999999987 56788899999998777
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.32 E-value=0.092 Score=62.76 Aligned_cols=244 Identities=10% Similarity=0.090 Sum_probs=130.0
Q ss_pred eEEEEEcCCCCEEEEE-eCCC----eEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCC-----------
Q 000936 207 VNWAAFHPTLPLIVSG-ADDR----QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK----------- 270 (1219)
Q Consensus 207 V~~l~~sp~g~~l~sg-~~dg----~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg----------- 270 (1219)
+....++|+|++++.+ +..| .++++|+.+++... ..+... ....+.|.++++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-DGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-EEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-Cccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3457899999988865 3333 59999999987632 122221 123499999988877665333
Q ss_pred cEEEEeCCCCeeE--EEEecCCCC--EEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeC-CeEEEEEe
Q 000936 271 SIRVWDVTKRTGV--QTFRREHDR--FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKD-RFLRYYEF 345 (1219)
Q Consensus 271 ~I~iwdl~~~~~~--~~~~~~~~~--i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d-~~i~v~d~ 345 (1219)
.|+.|.+.+...- ..+...... ...+..++++++++.....+ .+ ..+.+.+.
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~-----------------------~~~s~v~~~d~ 259 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG-----------------------TSESEVYLLDL 259 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS-----------------------SSEEEEEEEEC
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc-----------------------ccCCeEEEEec
Confidence 3788888776432 344444433 56788899999887655333 12 45566666
Q ss_pred cCC----cceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCC--CccccccccC--ceeE
Q 000936 346 STQ----KDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGR--GDSVQDAKKG--LGGS 417 (1219)
Q Consensus 346 ~~~----~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~--~~~~~~~~~~--~i~~ 417 (1219)
..+ .....+..+.. .+....-+. |..+.+.+..+....+|+.++-..... ....+..+.. .+..
T Consensus 260 ~~~~~~~~~~~~l~~~~~-------~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~ 331 (414)
T PF02897_consen 260 DDGGSPDAKPKLLSPRED-------GVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLED 331 (414)
T ss_dssp CCTTTSS-SEEEEEESSS-------S-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEE
T ss_pred cccCCCcCCcEEEeCCCC-------ceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEE
Confidence 653 11111211111 222222222 444444444333334444444332221 1102223333 2333
Q ss_pred EEEEeCCeEEEEEcCCC--EEEEEecC-CceeEeeeCCc--ceEEEEEeCCCcEEE-E--e---CCeEEEEEcCCCeEE
Q 000936 418 AIFIARNRFAVLDKSSN--QVLVKNLK-NEVVKKSILPI--AADAIFYAGTGNLLC-R--A---EDRVVIFDLQQRLVL 485 (1219)
Q Consensus 418 ~~fs~d~~~l~~~~~dg--~I~Iwdl~-~~~~~~i~~~~--~v~~l~~s~dg~~L~-s--~---d~~I~l~dl~~~~~l 485 (1219)
+.. ..+.+++....++ .|+++++. +.....+..+. .|..+...+++..+. + + ..+++-||+.+++..
T Consensus 332 ~~~-~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 332 VSL-FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEE-ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEE-ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 332 2344555544444 58889999 88888887766 455665556655552 2 2 689999999998754
No 367
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.29 E-value=8.2e-05 Score=85.70 Aligned_cols=159 Identities=14% Similarity=0.272 Sum_probs=106.9
Q ss_pred cccCCCEEEEEEeC-CCCEEEEEEC----CCeEEEEECCCC--eEE--EEecc-cCCCEEEEEEecCCCEEEEEECCCeE
Q 000936 6 ETKSNRVKGLSFHS-KRPWILASLH----SGVIQLWDYRMG--TLI--DRFDE-HDGPVRGVHFHKSQPLFVSGGDDYKI 75 (1219)
Q Consensus 6 ~~h~~~V~~i~fsp-dg~~Lasg~~----dg~I~iWd~~~g--~~i--~~l~~-h~~~V~~l~fsp~~~~Lasgs~Dg~I 75 (1219)
.+|....++++|++ |..+||+|.. |..+.|||+.++ .+. ..|.+ ......+++|-.+.+++.+|.....+
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~ 178 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV 178 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence 45677889999998 7788888843 567999999876 111 11222 33445689999999999999999999
Q ss_pred EEEEcCCCeEEEEEccCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEC-CCC-eEEEEEec----CCCCeEEEEEecCCC
Q 000936 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHH-EYPWIVSASDDQTIRIWNW-QSR-TCISVLTG----HNHYVMCASFHPKED 148 (1219)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~I~~l~fs~-d~~~l~s~s~Dg~I~iwd~-~s~-~~i~~~~~----h~~~V~~l~~sp~~~ 148 (1219)
.++|++.. +.....-.+..+..+...| ...++++-+ ||.|.+||. .+- .++..+.. ....+..++|.|...
T Consensus 179 ~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt 256 (783)
T KOG1008|consen 179 HIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT 256 (783)
T ss_pred hhhhhhhh-hhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc
Confidence 99998732 1111222345677788888 556777655 999999993 221 22222221 123488999999753
Q ss_pred -EEEEEEC-CCeEEEEECCC
Q 000936 149 -LVVSASL-DQTVRVWDIGA 166 (1219)
Q Consensus 149 -~l~s~s~-dg~I~vwd~~~ 166 (1219)
.+++.+. .++|+.+|+..
T Consensus 257 glla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 257 GLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred chhhhhccCcceEEEecccc
Confidence 4555554 57899999865
No 368
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.51 Score=55.44 Aligned_cols=247 Identities=11% Similarity=0.050 Sum_probs=155.1
Q ss_pred EEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEE-E
Q 000936 33 IQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGG-DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV-S 110 (1219)
Q Consensus 33 I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs-~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~-s 110 (1219)
+.+++..+......+..+. ....+...+++..+.... ....+.+-+............-...-..++.++.++.++ +
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 6666666655555554444 446778888885444332 222565555542222221221114456788888888544 4
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEEC---CCeEEEEECCCCccccccCCccceeecccccc
Q 000936 111 ASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL---DQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187 (1219)
Q Consensus 111 ~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~---dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 187 (1219)
...+..|.+.|..+.+.......-. ....++++|+++.+.++.. ++++.+.|..+.+....
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~--------------- 155 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT--------------- 155 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE---------------
Confidence 4456899999988777766654322 5678999999977776665 67888888776544321
Q ss_pred ccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeEEe---ecCCCCCeEEEEEccCCCEE
Q 000936 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDT---LRGHMNNVSCVMFHAKQDII 263 (1219)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~-~dg~I~iwd~~~~~~~~~~~---~~~h~~~I~~l~~sp~g~~L 263 (1219)
...-..+ ..+++.|+|..+.... .++.|.+.|......+. .. ...-......+.++|+|..+
T Consensus 156 ------------~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~ 221 (381)
T COG3391 156 ------------IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRV 221 (381)
T ss_pred ------------EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEE
Confidence 1111123 7899999999665554 78999999987776422 11 11222344678999999977
Q ss_pred EEEeCC---CcEEEEeCCCCeeEEEEecCCC-CEEEEEEeCCCCEEEEEeC
Q 000936 264 VSNSED---KSIRVWDVTKRTGVQTFRREHD-RFWILASHPEMNLLAAGHD 310 (1219)
Q Consensus 264 ~s~s~d---g~I~iwdl~~~~~~~~~~~~~~-~i~~l~~sp~~~~la~g~d 310 (1219)
.+.... +.+...|..++.....-..... ....+..+|++..+.+...
T Consensus 222 yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 222 YVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS 272 (381)
T ss_pred EEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec
Confidence 665443 5899999888776665221222 4567888898887776643
No 369
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.23 E-value=0.33 Score=59.39 Aligned_cols=264 Identities=12% Similarity=0.099 Sum_probs=143.2
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEecc--cCC--CEEEEEEecCCCEEEEEE------CCCeEEEEEcCCCeEEEEEcc
Q 000936 22 PWILASLHSGVIQLWDYRMGTLIDRFDE--HDG--PVRGVHFHKSQPLFVSGG------DDYKIKVWNYKMHRCLFTLLG 91 (1219)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~--h~~--~V~~l~fsp~~~~Lasgs------~Dg~I~vWd~~~~~~~~~l~~ 91 (1219)
..+++++.+|.|.-.|.++|+.+..... +.. .+++--.--++ .++++. .+|.|.-+|.++|+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4677788899999999999999877642 111 11110000134 444443 268999999999998876532
Q ss_pred CCC-------------------------------CEE-EEEEcCCCCEEEEEECC-----C-----------eEEEEECC
Q 000936 92 HLD-------------------------------YIR-TVQFHHEYPWIVSASDD-----Q-----------TIRIWNWQ 123 (1219)
Q Consensus 92 h~~-------------------------------~I~-~l~fs~d~~~l~s~s~D-----g-----------~I~iwd~~ 123 (1219)
-.. .+. .+.+.++..+++.+..+ + .|.-.|.+
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 111 111 23555655566655421 2 67777889
Q ss_pred CCeEEEEEecCCCCeE---------EEEEecCCC---EEEEEECCCeEEEEECCCCccccccCCccceee----ccc-cc
Q 000936 124 SRTCISVLTGHNHYVM---------CASFHPKED---LVVSASLDQTVRVWDIGALRKKTVSPADDILRL----SQM-NT 186 (1219)
Q Consensus 124 s~~~i~~~~~h~~~V~---------~l~~sp~~~---~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~----~~~-~~ 186 (1219)
+|+....++...+.+. -+....+|+ .++.++.+|.+.+.|-.+++.....+....... ... ..
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~ 359 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR 359 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence 9998877764332222 122223554 788999999999999998876421110000000 000 00
Q ss_pred cc------cc-cccceEEEEEeecCCCeEE--EEEcCCCCEEEEEeCC--------------------------------
Q 000936 187 DL------FG-GVDAVVKYVLEGHDRGVNW--AAFHPTLPLIVSGADD-------------------------------- 225 (1219)
Q Consensus 187 ~~------~~-~~~~~~~~~~~~~~~~V~~--l~~sp~g~~l~sg~~d-------------------------------- 225 (1219)
.. +. ...........+..+.+++ ++++|+..+++....+
T Consensus 360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~ 439 (527)
T TIGR03075 360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH 439 (527)
T ss_pred CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence 00 00 0000111122333333332 4555555444433322
Q ss_pred -CeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC
Q 000936 226 -RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE 289 (1219)
Q Consensus 226 -g~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~ 289 (1219)
|.|.-+|+.+++. .-..........+. +.-.+.+++.++.+|.++.+|..+|+.+..++..
T Consensus 440 ~g~l~AiD~~tGk~--~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 440 MGSLIAWDPITGKI--VWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred ceeEEEEeCCCCce--eeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 4566777777764 21111111111111 1124567778888999999999999999888754
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.11 E-value=0.034 Score=68.40 Aligned_cols=214 Identities=10% Similarity=-0.011 Sum_probs=117.2
Q ss_pred CCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEe------CCC--cEEEEeCCCCeeEEEEecCCCCEEEE
Q 000936 225 DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS------EDK--SIRVWDVTKRTGVQTFRREHDRFWIL 296 (1219)
Q Consensus 225 dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s------~dg--~I~iwdl~~~~~~~~~~~~~~~i~~l 296 (1219)
+|.+.-. ..+...++....+....+.+.+++|+|+.++... .|+ .|.+++.. +.. ..+.. ....+.-
T Consensus 328 ~G~l~~~--~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~P 402 (591)
T PRK13616 328 DGSLVSV--DGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRP 402 (591)
T ss_pred CCeEEEe--cCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCc
Confidence 6665443 3333222333333334678999999999887665 243 45555542 222 33322 2347788
Q ss_pred EEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccC
Q 000936 297 ASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPT 376 (1219)
Q Consensus 297 ~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 376 (1219)
.|+|+|..+++..++.-..+-.... ..+.+.+.++..+.... .+ ...|..+.||||
T Consensus 403 sWspDG~~lw~v~dg~~~~~v~~~~--------------~~gql~~~~vd~ge~~~--~~--------~g~Issl~wSpD 458 (591)
T PRK13616 403 SWSLDADAVWVVVDGNTVVRVIRDP--------------ATGQLARTPVDASAVAS--RV--------PGPISELQLSRD 458 (591)
T ss_pred eECCCCCceEEEecCcceEEEeccC--------------CCceEEEEeccCchhhh--cc--------CCCcCeEEECCC
Confidence 9999988887766432211111000 23455555665544322 11 127999999999
Q ss_pred CCEEEEEEeCCCCEEEEEEecCCCCCC--Ccc--cc-ccccCceeEEEEEeCCeEEEEEcCCCEEEEEec--CCceeEee
Q 000936 377 ENAVLICSDVDGGSYELYVIPKDSIGR--GDS--VQ-DAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNL--KNEVVKKS 449 (1219)
Q Consensus 377 g~~llv~~~~~dg~i~l~~~~~~~~~~--~~~--~~-~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl--~~~~~~~i 449 (1219)
|.++++..+ +.+.+-.+.....+. +.. .+ ..-...+.++.|..++.+++... ++.-.+|.+ ++.....+
T Consensus 459 G~RiA~i~~---g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~-~~~~~v~~v~vDG~~~~~~ 534 (591)
T PRK13616 459 GVRAAMIIG---GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRS-DPEHPVWYVNLDGSNSDAL 534 (591)
T ss_pred CCEEEEEEC---CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEec-CCCCceEEEecCCcccccc
Confidence 999998875 677664443322232 110 11 12223357899999999775544 444445544 44443333
Q ss_pred eCC---cceEEEEEeCCCcEEEEeCC
Q 000936 450 ILP---IAADAIFYAGTGNLLCRAED 472 (1219)
Q Consensus 450 ~~~---~~v~~l~~s~dg~~L~s~d~ 472 (1219)
... .++..|+-+++ .+++..++
T Consensus 535 ~~~n~~~~v~~vaa~~~-~iyv~~~~ 559 (591)
T PRK13616 535 PSRNLSAPVVAVAASPS-TVYVTDAR 559 (591)
T ss_pred CCCCccCceEEEecCCc-eEEEEcCC
Confidence 332 26777777763 45555433
No 371
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.11 E-value=0.35 Score=56.73 Aligned_cols=150 Identities=16% Similarity=0.294 Sum_probs=92.5
Q ss_pred CCCEEEEEEeCCCCEEEEEE--CCCeEEEEECCCCeEEEEecccCCCEEEEEEecC----CCEEEEEECCCeEEEEEcC-
Q 000936 9 SNRVKGLSFHSKRPWILASL--HSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS----QPLFVSGGDDYKIKVWNYK- 81 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~Lasg~--~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~----~~~Lasgs~Dg~I~vWd~~- 81 (1219)
-.+|.+++|..-.+.+++.. ++|.+++=| .+.+..| ..|.++.|.|- .+.|........|.||.+.
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 35789999985555555553 466555433 2445555 34889999984 4455566667899999874
Q ss_pred ----CCeEEEEEccCC---C--CEEEEEEcCCCCEEEEEECCCeEEEEECC--CCeEEEEEecCCCCeEEEEEecCCCEE
Q 000936 82 ----MHRCLFTLLGHL---D--YIRTVQFHHEYPWIVSASDDQTIRIWNWQ--SRTCISVLTGHNHYVMCASFHPKEDLV 150 (1219)
Q Consensus 82 ----~~~~~~~l~~h~---~--~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~--s~~~i~~~~~h~~~V~~l~~sp~~~~l 150 (1219)
+++.+..-..+- - --..+.|||....|++-.....-.+.++. +.....-++ ..+.|.|.+|.+||+.|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEE
Confidence 233333222111 1 12457899999877776655544555554 233333443 46789999999999877
Q ss_pred EEEE-CCCeEEEEECCC
Q 000936 151 VSAS-LDQTVRVWDIGA 166 (1219)
Q Consensus 151 ~s~s-~dg~I~vwd~~~ 166 (1219)
+++- ..=.-++||-..
T Consensus 171 VVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEeCCeEEEEEecCch
Confidence 6654 333456787543
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.05 E-value=0.21 Score=56.19 Aligned_cols=226 Identities=11% Similarity=0.059 Sum_probs=131.7
Q ss_pred EEEEeCCCCEEE-EEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEcc-
Q 000936 14 GLSFHSKRPWIL-ASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG- 91 (1219)
Q Consensus 14 ~i~fspdg~~La-sg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~- 91 (1219)
+-.|.+++..|+ +--..+.|.-|+..+|+.. .+. +.+.+.++..-..+..|+++.. -+.+++.+++..+..+..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence 345777777444 4445788888987766432 232 3334455555455555665544 356677665555333211
Q ss_pred ----CCCCEEEEEEcCCCCEEEEEEC-----------CCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEEC-
Q 000936 92 ----HLDYIRTVQFHHEYPWIVSASD-----------DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL- 155 (1219)
Q Consensus 92 ----h~~~I~~l~fs~d~~~l~s~s~-----------Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~- 155 (1219)
.......+...|+|.+-++... -|.|+..|. .+..+..+..+-..-+.++|||+++.+..+..
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 1134556788888875554333 133444443 56666666666666678999999987776654
Q ss_pred CCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECC
Q 000936 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR-QVKLWRMN 234 (1219)
Q Consensus 156 dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg-~I~iwd~~ 234 (1219)
.+.|.-|++....... + ............+..-.++...+|.+.+++..+| .|.+|+..
T Consensus 184 ~~~i~r~~~d~~~g~~------------------~--~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 184 ANRIHRYDLDPATGPI------------------G--GRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred CCeEEEEecCcccCcc------------------C--CcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 4778888775311000 0 0011122223456666788888888776555554 89999998
Q ss_pred CCCeeeEEeecCCCCCeEEEEEc-cCCCEEEEEe
Q 000936 235 ETKAWEVDTLRGHMNNVSCVMFH-AKQDIIVSNS 267 (1219)
Q Consensus 235 ~~~~~~~~~~~~h~~~I~~l~~s-p~g~~L~s~s 267 (1219)
++. +....-....+++++|- |+.+.|.+.+
T Consensus 244 -G~l--~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 244 -GKL--LGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred -CcE--EEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 665 55555554677888885 4445554443
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0024 Score=74.22 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=70.5
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEE-EEEEecCCCEEEEEECCCeEEEEEcCCCeEEE
Q 000936 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF 87 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~-~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~ 87 (1219)
...|.-+.|+|....+|.+..+|.|.+.-+. .+.+.++.-|...++ +++|.|||++||+|-.||+|++-|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4568899999999999999999999999976 778888887888887 99999999999999999999999999887665
Q ss_pred E
Q 000936 88 T 88 (1219)
Q Consensus 88 ~ 88 (1219)
.
T Consensus 99 ~ 99 (665)
T KOG4640|consen 99 S 99 (665)
T ss_pred c
Confidence 4
No 374
>PRK10115 protease 2; Provisional
Probab=97.01 E-value=1.7 Score=55.13 Aligned_cols=240 Identities=10% Similarity=0.110 Sum_probs=122.9
Q ss_pred CeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCC------CcEEE
Q 000936 206 GVNWAAFHPTLPLIVSGADD-----RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED------KSIRV 274 (1219)
Q Consensus 206 ~V~~l~~sp~g~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~d------g~I~i 274 (1219)
.+..+.++|+|++|+.+.+. ..|++.|+.++... ...+.+ . -..++|++|++.|+....+ ..|..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-CccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 46678899999988776432 35888898877531 111111 1 1458999999877665442 35777
Q ss_pred EeCCCC--eeEEEEecCCCCEEEEEE-eCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEec--CCc
Q 000936 275 WDVTKR--TGVQTFRREHDRFWILAS-HPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFS--TQK 349 (1219)
Q Consensus 275 wdl~~~--~~~~~~~~~~~~i~~l~~-sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~--~~~ 349 (1219)
+++.++ +....+.......+...+ +.+++++.....++ .++.+.+++.. ++.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~-----------------------~~~~~~l~~~~~~~~~ 260 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA-----------------------TTSEVLLLDAELADAE 260 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC-----------------------ccccEEEEECcCCCCC
Confidence 788776 333344433333442223 33666554433222 24556666632 222
Q ss_pred ceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccc-c-CceeEEEEEeCCeEE
Q 000936 350 DTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAK-K-GLGGSAIFIARNRFA 427 (1219)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~-~-~~i~~~~fs~d~~~l 427 (1219)
...+..... + ....+ ...+..+.+.+..+....+|+.++-...+... .+-.+ . ..+..+.+. .+.++
T Consensus 261 ~~~~~~~~~-~------~~~~~--~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~-~l~~~~~~~~i~~~~~~-~~~l~ 329 (686)
T PRK10115 261 PFVFLPRRK-D------HEYSL--DHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWE-ELIPPRENIMLEGFTLF-TDWLV 329 (686)
T ss_pred ceEEEECCC-C------CEEEE--EeCCCEEEEEEcCCCCCceEEEecCCCcccCe-EEECCCCCCEEEEEEEE-CCEEE
Confidence 212221111 1 11112 12234555555433445566655433222111 22222 2 356667776 45666
Q ss_pred EEEcCCCEEEEE--ecCCceeEeeeC--CcceEEEEEe--CCC-cEEEEe-----CCeEEEEEcCCCe
Q 000936 428 VLDKSSNQVLVK--NLKNEVVKKSIL--PIAADAIFYA--GTG-NLLCRA-----EDRVVIFDLQQRL 483 (1219)
Q Consensus 428 ~~~~~dg~I~Iw--dl~~~~~~~i~~--~~~v~~l~~s--~dg-~~L~s~-----d~~I~l~dl~~~~ 483 (1219)
++...++.-+++ +..+.....+.. +..+..+.++ +++ .++++. .+.++.||+.+++
T Consensus 330 ~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 330 VEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 666667765555 444444555542 2233333344 343 344331 5889999998765
No 375
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.36 Score=51.44 Aligned_cols=120 Identities=12% Similarity=0.119 Sum_probs=80.2
Q ss_pred CCeEEEEecccCCCEEEEEEecCCCE-EEEEECCC-eEEEEEcCCCeEEEEEccCCC--CEEEEEEcCCCCEEEEEECC-
Q 000936 40 MGTLIDRFDEHDGPVRGVHFHKSQPL-FVSGGDDY-KIKVWNYKMHRCLFTLLGHLD--YIRTVQFHHEYPWIVSASDD- 114 (1219)
Q Consensus 40 ~g~~i~~l~~h~~~V~~l~fsp~~~~-Lasgs~Dg-~I~vWd~~~~~~~~~l~~h~~--~I~~l~fs~d~~~l~s~s~D- 114 (1219)
.|+.+.... -...-..|+|||..+. ++.+-.-| ...++|..+.+...++...++ ..-.-.|||||.+|+..-.|
T Consensus 57 aGk~v~~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf 135 (366)
T COG3490 57 AGKIVFATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF 135 (366)
T ss_pred CCceeeeee-cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence 455554442 2233456888887664 44444444 456889888777666643332 22335799999998876443
Q ss_pred ----CeEEEEECCCC-eEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEE
Q 000936 115 ----QTIRIWNWQSR-TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1219)
Q Consensus 115 ----g~I~iwd~~s~-~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vw 162 (1219)
|.|-|||...+ +.+..+..|.-....+.|.+||+.++.+. |-|...
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIeth 186 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETH 186 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--Cceecc
Confidence 78999998743 45677888887788899999999888874 555544
No 376
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.33 Score=54.59 Aligned_cols=232 Identities=12% Similarity=0.085 Sum_probs=127.4
Q ss_pred EEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEe
Q 000936 209 WAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR 287 (1219)
Q Consensus 209 ~l~~sp~g~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~ 287 (1219)
.-.|.++.. ++.+--..+.|.-|+..+++. ..+... +.+.++..-..+..|+++.. -+.+++..++.....+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~---~~~~~p-~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK---RVFPSP-GGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLA 102 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCce---EEEECC-CCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEec
Confidence 346777776 445555678899999887653 333322 23344444334445555433 26667765555422222
Q ss_pred -----cCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCC
Q 000936 288 -----REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGST 362 (1219)
Q Consensus 288 -----~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 362 (1219)
....+.+.....|+|.+.+..... +. .....-. ..+.++.++. .+....+.. . +
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~----~~--~~~~~~~---------~~G~lyr~~p-~g~~~~l~~--~--~- 161 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGY----FD--LGKSEER---------PTGSLYRVDP-DGGVVRLLD--D--D- 161 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCc----cc--cCccccC---------CcceEEEEcC-CCCEEEeec--C--c-
Confidence 122456778899998877655432 11 0000000 1233333333 222222111 1 0
Q ss_pred CCCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCC---CCCCC-ccccccccCceeEEEEEeCCeEEEEEcCCC-EEE
Q 000936 363 SLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD---SIGRG-DSVQDAKKGLGGSAIFIARNRFAVLDKSSN-QVL 437 (1219)
Q Consensus 363 ~~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~---~~~~~-~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg-~I~ 437 (1219)
......++||||++.+.++.. ..+.+.-|.+... ..... ........+.--.++...+|.+-+.+..+| .|.
T Consensus 162 --~~~~NGla~SpDg~tly~aDT-~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~ 238 (307)
T COG3386 162 --LTIPNGLAFSPDGKTLYVADT-PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVV 238 (307)
T ss_pred --EEecCceEECCCCCEEEEEeC-CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEE
Confidence 115567999999997766544 4556666666521 11110 001122234445677778888876554444 899
Q ss_pred EEecCCceeEeeeCC-cceEEEEEeCC-CcE-EEEe
Q 000936 438 VKNLKNEVVKKSILP-IAADAIFYAGT-GNL-LCRA 470 (1219)
Q Consensus 438 Iwdl~~~~~~~i~~~-~~v~~l~~s~d-g~~-L~s~ 470 (1219)
+|+.+++.+..+..| ..+++++|... .+. .+++
T Consensus 239 ~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 239 RFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 999999999999999 48888888764 444 4554
No 377
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.89 E-value=0.13 Score=59.02 Aligned_cols=141 Identities=16% Similarity=0.260 Sum_probs=93.2
Q ss_pred CCEEEEEEC---------C-CeEEEEECCCC----eEEEEe--cccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe
Q 000936 21 RPWILASLH---------S-GVIQLWDYRMG----TLIDRF--DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (1219)
Q Consensus 21 g~~Lasg~~---------d-g~I~iWd~~~g----~~i~~l--~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~ 84 (1219)
.+++++|+. . |.|.++++... ..+..+ ...+++|++++-- ++ +|+.+.. +.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~g-~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAVG-NKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEET-TEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEeec-CEEEEEEccCcc
Confidence 578888853 2 89999999884 222222 2568999999876 44 4555444 689999998776
Q ss_pred -EEEEEc-cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEE--ecCCCCeEEEEEecCCCEEEEEECCCeE
Q 000936 85 -CLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-RTCISVL--TGHNHYVMCASFHPKEDLVVSASLDQTV 159 (1219)
Q Consensus 85 -~~~~l~-~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s-~~~i~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~I 159 (1219)
....-. .....+.++... +++++.|.....+.++.++. ...+..+ ......++++.|-++++.++.+..+|.+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 433322 123366666665 45899999888888875543 3323333 2345668999998777899999999999
Q ss_pred EEEECCC
Q 000936 160 RVWDIGA 166 (1219)
Q Consensus 160 ~vwd~~~ 166 (1219)
.++....
T Consensus 197 ~~l~~~~ 203 (321)
T PF03178_consen 197 FVLRYNP 203 (321)
T ss_dssp EEEEE-S
T ss_pred EEEEECC
Confidence 9998753
No 378
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.85 E-value=0.99 Score=53.15 Aligned_cols=118 Identities=13% Similarity=0.139 Sum_probs=73.4
Q ss_pred ecCCCeEEEEEcCC----CCEEEEEeCCCeEEEEECCCC-----CeeeEEeecC---CCCCeEEEEEccCCCEEEEEeCC
Q 000936 202 GHDRGVNWAAFHPT----LPLIVSGADDRQVKLWRMNET-----KAWEVDTLRG---HMNNVSCVMFHAKQDIIVSNSED 269 (1219)
Q Consensus 202 ~~~~~V~~l~~sp~----g~~l~sg~~dg~I~iwd~~~~-----~~~~~~~~~~---h~~~I~~l~~sp~g~~L~s~s~d 269 (1219)
|.-..|..+.|.|- .+.++.......|.+|.+... +.....+..- ..--...+.|||....|++-+..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 34456788889884 345666677889999987522 2111111111 01113467899999998887766
Q ss_pred CcEEEEeCCCCe-eEEEEecCCCCEEEEEEeCCCCEEEEEeCCCee--EEEec
Q 000936 270 KSIRVWDVTKRT-GVQTFRREHDRFWILASHPEMNLLAAGHDSGMI--VFKLE 319 (1219)
Q Consensus 270 g~I~iwdl~~~~-~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~--v~~l~ 319 (1219)
..-.++++.... .+..--...+.|.+.+|.+||+.|+++-.+.+. +|+-.
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 554555554332 222222466789999999999998877666554 55443
No 379
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.85 E-value=0.24 Score=53.36 Aligned_cols=206 Identities=11% Similarity=0.147 Sum_probs=133.1
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec-CCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 000936 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG-HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR 168 (1219)
Q Consensus 90 ~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~-h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~ 168 (1219)
.+-...+.++.|+|+.+.|++......-.||=-.+|+.+.++.- .-+....+.+..++.++++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 45556699999999999999998888888887778998887742 12334567888788888887788888888776543
Q ss_pred cccccCCccceeeccccccccccccceEEEEEe--ec-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeeEEee
Q 000936 169 KKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE--GH-DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AWEVDTL 244 (1219)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~-~~~~~~~ 244 (1219)
...... + .+..+. .+ ..+...++|.|....|..+-+-.-+.||...... ...+...
T Consensus 162 ~~~~~~------------------~--~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~ 221 (316)
T COG3204 162 TVISAK------------------V--QKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHAS 221 (316)
T ss_pred cEEecc------------------c--eEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccc
Confidence 221100 0 011111 22 5678889999999999888887777777665433 1112111
Q ss_pred cCC-------CCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeEEEEecCC---------CCEEEEEEeCCCCEEEE
Q 000936 245 RGH-------MNNVSCVMFHA-KQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH---------DRFWILASHPEMNLLAA 307 (1219)
Q Consensus 245 ~~h-------~~~I~~l~~sp-~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~---------~~i~~l~~sp~~~~la~ 307 (1219)
..+ -..|+++.|++ .+.+++-+.+++.+.-.|.. |..+..+.... ...-.++..++|++.++
T Consensus 222 ~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 222 LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred cCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 122 23477888886 56677777778888777754 44333332111 12445777777777776
Q ss_pred EeCCCeeEE
Q 000936 308 GHDSGMIVF 316 (1219)
Q Consensus 308 g~d~gi~v~ 316 (1219)
+..+....|
T Consensus 301 SEPnlfy~F 309 (316)
T COG3204 301 SEPNLFYRF 309 (316)
T ss_pred ecCCcceec
Confidence 665554443
No 380
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0066 Score=70.73 Aligned_cols=93 Identities=8% Similarity=0.113 Sum_probs=75.7
Q ss_pred CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEE-EEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 000936 51 DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIR-TVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (1219)
Q Consensus 51 ~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~-~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~ 129 (1219)
...|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|++|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457889999999999999999999999987 788888887777777 99999999999999999999999999887665
Q ss_pred EE-ecCCCCeEEEEEe
Q 000936 130 VL-TGHNHYVMCASFH 144 (1219)
Q Consensus 130 ~~-~~h~~~V~~l~~s 144 (1219)
.. ..-...|.++.|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 42 1123344455454
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.69 E-value=0.12 Score=63.56 Aligned_cols=187 Identities=11% Similarity=0.031 Sum_probs=102.5
Q ss_pred CCEEEEEEecCCCEEEEEE------CCC--eEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECC-CeEEEE--
Q 000936 52 GPVRGVHFHKSQPLFVSGG------DDY--KIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-QTIRIW-- 120 (1219)
Q Consensus 52 ~~V~~l~fsp~~~~Lasgs------~Dg--~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~D-g~I~iw-- 120 (1219)
..+.+.++||+|..++... .|+ .|.+++.. +.......+ ...+.-.|+|+|.++.+.++. ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678999999999877665 244 45555542 222222232 237888999999888777543 223333
Q ss_pred ---------ECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEE---ECCCCccccccCCccceeeccccccc
Q 000936 121 ---------NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW---DIGALRKKTVSPADDILRLSQMNTDL 188 (1219)
Q Consensus 121 ---------d~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vw---d~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1219)
++..+.... ...+.|..+.|+|||..++... +|.|.+- ....+.....
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~---------------- 486 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALT---------------- 486 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeec----------------
Confidence 333322211 2345799999999999888766 4677663 3222211000
Q ss_pred cccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecC--CCCCeEEEEEccCCCEEEEE
Q 000936 189 FGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRG--HMNNVSCVMFHAKQDIIVSN 266 (1219)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~--h~~~I~~l~~sp~g~~L~s~ 266 (1219)
.......+-...+..+.|.+++.++ ++..++...+|.+.-.... ...+.+ ...++..++=+++ .++..
T Consensus 487 ------~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~ 556 (591)
T PRK13616 487 ------NPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVT 556 (591)
T ss_pred ------ccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEE
Confidence 0011112233345788999998854 5555555555554322211 111122 2456666666652 35555
Q ss_pred eCCCc
Q 000936 267 SEDKS 271 (1219)
Q Consensus 267 s~dg~ 271 (1219)
+.+|.
T Consensus 557 ~~~g~ 561 (591)
T PRK13616 557 DARAV 561 (591)
T ss_pred cCCce
Confidence 55663
No 382
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.68 E-value=0.15 Score=59.41 Aligned_cols=91 Identities=10% Similarity=0.181 Sum_probs=59.6
Q ss_pred EEEEcCCCCEEEEEeCCCeEEE---EECCCCC----eeeE---EeecCCC-CCeEEEEEcc-----------CCCEEEEE
Q 000936 209 WAAFHPTLPLIVSGADDRQVKL---WRMNETK----AWEV---DTLRGHM-NNVSCVMFHA-----------KQDIIVSN 266 (1219)
Q Consensus 209 ~l~~sp~g~~l~sg~~dg~I~i---wd~~~~~----~~~~---~~~~~h~-~~I~~l~~sp-----------~g~~L~s~ 266 (1219)
.++.+|++..|+.+..++.+.+ |+..... ...+ ..+.... ..|+++.+-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999988877666 6432111 1111 1111111 4677776643 46789999
Q ss_pred eCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeC
Q 000936 267 SEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (1219)
Q Consensus 267 s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp 300 (1219)
..+|.|++|.- +|..+..-..|.++|..+....
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999985 6766666566778887777644
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.019 Score=70.91 Aligned_cols=100 Identities=19% Similarity=0.293 Sum_probs=76.2
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEE--EEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEE
Q 000936 20 KRPWILASLHSGVIQLWDYRMGTLI--DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIR 97 (1219)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g~~i--~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~ 97 (1219)
.+.+++.|+..|.|...|+.. .+- ..=+.-.++|++++|+.+|.+++.|-.+|.|.+||..+++.++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~-nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTG-NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhc-ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 466889999999999888644 222 22234568999999999999999999999999999999999998877776655
Q ss_pred EE---EEcCCCCEEEEEECCCeEEEEEC
Q 000936 98 TV---QFHHEYPWIVSASDDQTIRIWNW 122 (1219)
Q Consensus 98 ~l---~fs~d~~~l~s~s~Dg~I~iwd~ 122 (1219)
.+ .+..++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 54 34455667788777775 5653
No 384
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.67 E-value=1.9 Score=50.40 Aligned_cols=271 Identities=11% Similarity=0.129 Sum_probs=148.0
Q ss_pred EEEEeCCCCEEEEEECCCeEEE---EECC-----CCeEEEEec---ccC--CCEEEEEEec-----------CCCEEEEE
Q 000936 14 GLSFHSKRPWILASLHSGVIQL---WDYR-----MGTLIDRFD---EHD--GPVRGVHFHK-----------SQPLFVSG 69 (1219)
Q Consensus 14 ~i~fspdg~~Lasg~~dg~I~i---Wd~~-----~g~~i~~l~---~h~--~~V~~l~fsp-----------~~~~Lasg 69 (1219)
.++.+|++..||.+..+..+.+ |+.. .++...... .++ ..|+++.|-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5788999999999977776655 6431 122222221 122 4788887744 34689999
Q ss_pred ECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCC---------CEEEEEECCCeEEE---------------------
Q 000936 70 GDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEY---------PWIVSASDDQTIRI--------------------- 119 (1219)
Q Consensus 70 s~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~---------~~l~s~s~Dg~I~i--------------------- 119 (1219)
..+|.|++|.- +|..+..-.-|..+|..+.+.... .-|..... +.|.+
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Idg~sL~~~L~~~~~~~~~~~ 163 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIIDGFSLFSVLRACRNQVARGA 163 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEecHHHHHHHHHHHHhhhhhh
Confidence 99999999985 677666656688888887775321 22222222 33333
Q ss_pred ----------------EECCCCeEEEEE--ecCCC-C---------e----EEEEEec-CCCEEEEEECCCeEEEEECCC
Q 000936 120 ----------------WNWQSRTCISVL--TGHNH-Y---------V----MCASFHP-KEDLVVSASLDQTVRVWDIGA 166 (1219)
Q Consensus 120 ----------------wd~~s~~~i~~~--~~h~~-~---------V----~~l~~sp-~~~~l~s~s~dg~I~vwd~~~ 166 (1219)
|.++....+.-. .+... . + ..+.-++ ....+++++.+-.+-.|-...
T Consensus 164 ~~~~~~~~~~~L~ykKw~l~~~~~i~D~~~~G~~~~~~fd~l~~aS~~gf~a~~~~s~~~~~~~i~~G~~P~v~f~~~~e 243 (415)
T PF14655_consen 164 ASGSDSPAPPPLSYKKWNLQSQDTINDAAICGPMPPSTFDHLVTASIGGFNAKYRSSPPRMSRYITVGSSPFVSFYYASE 243 (415)
T ss_pred hcccccCCCCccceeEecCCCCCcEeeEEEecCCCCcHHHHHHhhhcccccceeecCCcceEEEEEecCCceEEEEEccC
Confidence 333322211111 00000 0 0 0001111 123566666777777776654
Q ss_pred CccccccCC--------------ccceeeccccc------------cccccccceEEEEEeecCCCeEEEEEcCCCCEEE
Q 000936 167 LRKKTVSPA--------------DDILRLSQMNT------------DLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220 (1219)
Q Consensus 167 ~~~~~~~~~--------------~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~ 220 (1219)
+........ ...+....... .............+....+.+.+++.+|++++.+
T Consensus 244 ~~s~~~ls~va~~aVas~l~sav~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~l~D~~R~~~~i~~sP~~~laA 323 (415)
T PF14655_consen 244 GSSQPLLSDVASSAVASKLTSAVSGWLGWGSWRSEQQPQEKQPPEPKPEPAAPLPMRFGLPDSKREGESICLSPSGRLAA 323 (415)
T ss_pred CCCcccHHHHHHHHHHHHHHhhhHhhcccCCCCCccccccccccccCcCCCcccceEEeeccCCceEEEEEECCCCCEEE
Confidence 332211000 00000000000 0111123335556777778899999999999999
Q ss_pred EEeCCCeEEEEECCCCCeeeEEeecCCCCCeEE-EEEc-cC----------------CC-EEEEEeCCCcEEEEeCCCCe
Q 000936 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSC-VMFH-AK----------------QD-IIVSNSEDKSIRVWDVTKRT 281 (1219)
Q Consensus 221 sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~-l~~s-p~----------------g~-~L~s~s~dg~I~iwdl~~~~ 281 (1219)
+...-|.|.++|+..... ++.++|..+.=.. +... +. .. +++-+-.-|.|-||.++++.
T Consensus 324 ~tDslGRV~LiD~~~~~v--vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 324 VTDSLGRVLLIDVARGIV--VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred EEcCCCcEEEEECCCChh--hhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCeEEEEecCCCC
Confidence 988889999999998875 4444443332100 0000 00 01 23445567889999999887
Q ss_pred eEEEEec
Q 000936 282 GVQTFRR 288 (1219)
Q Consensus 282 ~~~~~~~ 288 (1219)
.+..+..
T Consensus 402 Rv~a~~v 408 (415)
T PF14655_consen 402 RVAAFNV 408 (415)
T ss_pred EEEEEEe
Confidence 7766653
No 385
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.63 E-value=0.0049 Score=44.36 Aligned_cols=39 Identities=36% Similarity=0.709 Sum_probs=34.8
Q ss_pred CeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 000936 41 GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (1219)
Q Consensus 41 g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd 79 (1219)
++.+..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455677778999999999999999999999999999996
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.63 E-value=0.94 Score=52.04 Aligned_cols=242 Identities=8% Similarity=0.084 Sum_probs=107.2
Q ss_pred CCCEEEEEE-CCCeEEEEECCC----CeEEEEecc---cC----CCEEEEEEecCCCEEEEEE------CCCeEEEEEcC
Q 000936 20 KRPWILASL-HSGVIQLWDYRM----GTLIDRFDE---HD----GPVRGVHFHKSQPLFVSGG------DDYKIKVWNYK 81 (1219)
Q Consensus 20 dg~~Lasg~-~dg~I~iWd~~~----g~~i~~l~~---h~----~~V~~l~fsp~~~~Lasgs------~Dg~I~vWd~~ 81 (1219)
++++|++.+ .++.|+|.|+.+ -++.+.++. +. +.-..+.--|+|..++|+- .-|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 567777765 778999999874 355566542 21 1112233347898888863 22578888888
Q ss_pred CCeEEEEEccC---CCCEEEEEEcCCCCEEEEEEC--------------------CCeEEEEECCCCeEEEEEecCCC--
Q 000936 82 MHRCLFTLLGH---LDYIRTVQFHHEYPWIVSASD--------------------DQTIRIWNWQSRTCISVLTGHNH-- 136 (1219)
Q Consensus 82 ~~~~~~~l~~h---~~~I~~l~fs~d~~~l~s~s~--------------------Dg~I~iwd~~s~~~i~~~~~h~~-- 136 (1219)
+.+........ ...-..+.|.|..+.++|+.. ..++.+||+.+++.++++.-...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 77777766532 234567888898888888753 45899999999999999874432
Q ss_pred CeEEEEEecC--CCE-EEEEECCCeEEEEEC-CCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEE
Q 000936 137 YVMCASFHPK--EDL-VVSASLDQTVRVWDI-GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAF 212 (1219)
Q Consensus 137 ~V~~l~~sp~--~~~-l~s~s~dg~I~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 212 (1219)
.+..+.|..+ ..+ ++.+-...+|..|-- ..++-.. ...+.+....-.-+.-.+ +...+..-..-|+.+..
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a----~kVi~ip~~~v~~~~lp~--ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA----EKVIDIPAKKVEGWILPE--MLKPFGAVPPLITDILI 319 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE----EEEEEE--EE--SS---G--GGGGG-EE------EEE
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee----eEEEECCCcccCcccccc--cccccccCCCceEeEEE
Confidence 3556777544 333 333334455555433 2221100 000000000000000000 00000011345788999
Q ss_pred cCCCCEEEEEe-CCCeEEEEECCCCCeee-EEeec--C--------------CCCCeEEEEEccCCCEEEEEe
Q 000936 213 HPTLPLIVSGA-DDRQVKLWRMNETKAWE-VDTLR--G--------------HMNNVSCVMFHAKQDIIVSNS 267 (1219)
Q Consensus 213 sp~g~~l~sg~-~dg~I~iwd~~~~~~~~-~~~~~--~--------------h~~~I~~l~~sp~g~~L~s~s 267 (1219)
|.|.++|..++ .+|.|+.||+....... +..+. + -.+...-+..|.||+.|...+
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 99999876655 68999999998765422 22111 1 112235677778888777654
No 387
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.62 E-value=0.15 Score=46.98 Aligned_cols=100 Identities=12% Similarity=0.177 Sum_probs=70.6
Q ss_pred EEEEEEec---CC-CEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 000936 54 VRGVHFHK---SQ-PLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (1219)
Q Consensus 54 V~~l~fsp---~~-~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~ 129 (1219)
|++|++.. +| +.|++|++|..|++|+- ...+..+.. .+.|+++.-... ..++.+..+|+|-+|+- .+.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 67777765 22 58999999999999974 467777764 466777777766 56899999999999984 23344
Q ss_pred EEecCCCCeEEEEEec-CC---CEEEEEECCCeEE
Q 000936 130 VLTGHNHYVMCASFHP-KE---DLVVSASLDQTVR 160 (1219)
Q Consensus 130 ~~~~h~~~V~~l~~sp-~~---~~l~s~s~dg~I~ 160 (1219)
..+.. +.++++.+.. ++ .-|++|-.+|.|-
T Consensus 76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 44433 3366666653 32 3788888888764
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.61 E-value=0.16 Score=54.01 Aligned_cols=160 Identities=14% Similarity=0.112 Sum_probs=91.8
Q ss_pred EEEEcCCCCE-EEEEeCCCe-EEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCC-
Q 000936 209 WAAFHPTLPL-IVSGADDRQ-VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED-----KSIRVWDVTKR- 280 (1219)
Q Consensus 209 ~l~~sp~g~~-l~sg~~dg~-I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~d-----g~I~iwdl~~~- 280 (1219)
.++++|..+. ++.+-.-|+ ..++|.++.....+..-.....---.=.|||||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 3677776543 334444443 567888776652221111111111223799999999876443 67999998754
Q ss_pred eeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEE-EecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCC
Q 000936 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVF-KLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRP 359 (1219)
Q Consensus 281 ~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~-~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~ 359 (1219)
+.+.++..+.-....+.+.+||+.++... +|+... +..+....+. ...-++.+.|..+|..+....++..
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvan-GGIethpdfgR~~lNld--------sMePSlvlld~atG~liekh~Lp~~ 222 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVAN-GGIETHPDFGRTELNLD--------SMEPSLVLLDAATGNLIEKHTLPAS 222 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeC-CceecccccCccccchh--------hcCccEEEEeccccchhhhccCchh
Confidence 34556777777778899999999888764 333322 1111111000 0234455666666666555555432
Q ss_pred CCCCCCCCCeEEEEccCCCEE
Q 000936 360 GSTSLNQSPRTLSYSPTENAV 380 (1219)
Q Consensus 360 ~~~~~~~~i~~l~~spdg~~l 380 (1219)
-+ ...++.+...+||..+
T Consensus 223 l~---~lSiRHld~g~dgtvw 240 (366)
T COG3490 223 LR---QLSIRHLDIGRDGTVW 240 (366)
T ss_pred hh---hcceeeeeeCCCCcEE
Confidence 22 1278888888888743
No 389
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.021 Score=69.59 Aligned_cols=114 Identities=19% Similarity=0.227 Sum_probs=82.5
Q ss_pred HHHHhhh-cCcccchhHHHHHHhCCChhhhhccccCcch---hhhHHhh-cCCHHHHHHHHHHhCChhHHHHHHHHHHHc
Q 000936 612 HVMSMIR-NSQLCGQAMIAYLQQKGFPEVALHFVKDERT---RFNLALE-SGNIQIAVASAKEIDEKDHWYRLGVEALRQ 686 (1219)
Q Consensus 612 ~a~~~i~-~~~~~~~~i~~~l~~~g~~e~Al~~~~d~~~---rf~lal~-~g~~~~A~~~a~~l~~~~~w~~La~~al~~ 686 (1219)
.++..+. -.+..+..|.......+..|+|....+.-.. .....++ .|++|+|.+.|...+.|++|.+||++-+.+
T Consensus 1038 rVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1038 RVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhc
Confidence 3444443 3445555666666666677777766541111 1122222 599999999999999999999999999999
Q ss_pred CChhHHHHHHHhhcC---cchhhHHHHhcCCHHHHHHHHHHH
Q 000936 687 GNAGIVEYAYQRTKN---FERLSFLYLITGNMDKLSKMLKIA 725 (1219)
Q Consensus 687 g~~~~Ae~~y~~~~d---~~~l~~l~~~~g~~~~l~kl~~~~ 725 (1219)
|....|.+.|.++.| |..+..+...+|+++.|.+-..++
T Consensus 1118 ~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred CchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999999999955 566777777899999888665554
No 390
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.13 Score=63.18 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=87.2
Q ss_pred hHHHHHhccCHHHHHHhhhcCcc---cchhHHHHHHhCCChhhhhccccCc-chhhhHHhhcCCHHHHHHHHHHhCChhH
Q 000936 600 IFKLSLLRKRYDHVMSMIRNSQL---CGQAMIAYLQQKGFPEVALHFVKDE-RTRFNLALESGNIQIAVASAKEIDEKDH 675 (1219)
Q Consensus 600 ~f~~~l~~~~~~~a~~~i~~~~~---~~~~i~~~l~~~g~~e~Al~~~~d~-~~rf~lal~~g~~~~A~~~a~~l~~~~~ 675 (1219)
+|...+.+|+|.+|-+...+++. .....+.-++.-+-+ +=+ .-| .+.|+..+..|.++.+...
T Consensus 366 rFneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~--~Gq--~sPLLqYFg~LLdqGkLNk~ETL--------- 432 (1666)
T KOG0985|consen 366 RFNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQ--PGQ--PSPLLQYFGTLLDQGKLNKYETL--------- 432 (1666)
T ss_pred HHHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCC--CCC--CCcHHHHHHHHHhcccccHHHHH---------
Confidence 46667777888877776665542 112222222222111 000 001 2367777777776655443
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHHHHHHcCChhHHHHHHHhcCCHHHHHHHHHHcC
Q 000936 676 WYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAG 755 (1219)
Q Consensus 676 w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~~~~~~~~~~~~~~al~lgd~~eai~i~~~~g 755 (1219)
+|++--+.||+.+..++-+..- +|.+- ++|-.+.+ .-+...+..+|+..+-...++.+|.++|
T Consensus 433 --EL~RpVL~Q~RkqLlekWl~Ed----KLeCS-------EELGDlVK----~~d~~lAL~iYlrAnvp~KVi~cfAE~G 495 (1666)
T KOG0985|consen 433 --ELCRPVLQQGRKQLLEKWLKED----KLECS-------EELGDLVK----PYDTTLALSIYLRANVPAKVIQCFAETG 495 (1666)
T ss_pred --HHHHHHHhhhHHHHHHHHhhhh----hhhhh-------HHhcCccc----cCCchHHHHHHHHcCCcHHHHHHHHHhc
Confidence 4556666777776666655442 22221 12111211 2233455667888888888888888888
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHc
Q 000936 756 HLPLAYITASVHGLQDVAERLAAEL 780 (1219)
Q Consensus 756 ~~~~A~~la~~~g~~~~a~~l~~~~ 780 (1219)
+++.++..+++-|.......++++.
T Consensus 496 qf~KiilY~kKvGyTPdymflLq~l 520 (1666)
T KOG0985|consen 496 QFKKIILYAKKVGYTPDYMFLLQQL 520 (1666)
T ss_pred chhHHHHHHHHcCCCccHHHHHHHH
Confidence 8888888888888877777777654
No 391
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.47 E-value=0.1 Score=65.12 Aligned_cols=138 Identities=12% Similarity=0.126 Sum_probs=97.5
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCC-eEEEEEecC-------CCEEEEEECCCeEEEEECCCCccccccCCccceeecc
Q 000936 112 SDDQTIRIWNWQSRTCISVLTGHNHY-VMCASFHPK-------EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQ 183 (1219)
Q Consensus 112 s~Dg~I~iwd~~s~~~i~~~~~h~~~-V~~l~~sp~-------~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 183 (1219)
.....|+-.|+..|+.+..+..|... |.. +.|+ ....+.|-.+..+..||.+-...+....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~--------- 569 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS--------- 569 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeec---------
Confidence 34678999999999999999887654 544 4443 2345667778899999988532111000
Q ss_pred ccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEE
Q 000936 184 MNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDII 263 (1219)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L 263 (1219)
............|++-+.+| +||+|+.+|.||+||-...+. ...+.+-..+|.+|..+.||++|
T Consensus 570 -------------~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~A--KT~lp~lG~pI~~iDvt~DGkwi 633 (794)
T PF08553_consen 570 -------------QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRA--KTALPGLGDPIIGIDVTADGKWI 633 (794)
T ss_pred -------------cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhh--hhcCCCCCCCeeEEEecCCCcEE
Confidence 00111334567788888777 699999999999999654433 55667788999999999999998
Q ss_pred EEEeCCCcEEEEeC
Q 000936 264 VSNSEDKSIRVWDV 277 (1219)
Q Consensus 264 ~s~s~dg~I~iwdl 277 (1219)
++.+. ..+.+++.
T Consensus 634 laTc~-tyLlLi~t 646 (794)
T PF08553_consen 634 LATCK-TYLLLIDT 646 (794)
T ss_pred EEeec-ceEEEEEE
Confidence 87764 45777764
No 392
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.47 E-value=0.19 Score=46.37 Aligned_cols=100 Identities=11% Similarity=0.167 Sum_probs=69.7
Q ss_pred EEEEEEeC-CC---CEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE
Q 000936 12 VKGLSFHS-KR---PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF 87 (1219)
Q Consensus 12 V~~i~fsp-dg---~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~ 87 (1219)
|++|++.. ++ +-|++|+.|..|++|+ ..+.+..+..+ +.|++++-... ..|+.+..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 67788766 33 5899999999999998 45777777654 45667766655 579999999999999853 4444
Q ss_pred EEccCCCCEEEEEEcCC---C-CEEEEEECCCeEE
Q 000936 88 TLLGHLDYIRTVQFHHE---Y-PWIVSASDDQTIR 118 (1219)
Q Consensus 88 ~l~~h~~~I~~l~fs~d---~-~~l~s~s~Dg~I~ 118 (1219)
..+.. ..+.++.+..- | +-|++|-.+|.|-
T Consensus 76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 45433 33566655432 2 2688887788764
No 393
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.66 Score=50.10 Aligned_cols=173 Identities=11% Similarity=0.085 Sum_probs=115.1
Q ss_pred cccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccC-CCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 000936 48 DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGH-LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126 (1219)
Q Consensus 48 ~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h-~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~ 126 (1219)
.+-...|.++.|+|+.+.|.+..+...-.||=..+|+.+.++.-. -.....+.+..++.+.++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 344555999999999999998888888888877889999887421 2234568888888888877778888888776542
Q ss_pred EEEEE---------ecC-CCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceE
Q 000936 127 CISVL---------TGH-NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (1219)
Q Consensus 127 ~i~~~---------~~h-~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1219)
.+... ..+ +.....++|.|.+..+..+-+-.-+.+|............ ... + .
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~------~~~---------~--~ 224 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH------ASL---------D--P 224 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc------ccc---------C--c
Confidence 22111 122 5667899999999999998888888888776322111000 000 0 0
Q ss_pred EEEEeecCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC
Q 000936 197 KYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETK 237 (1219)
Q Consensus 197 ~~~~~~~~~~V~~l~~sp-~g~~l~sg~~dg~I~iwd~~~~~ 237 (1219)
.....-.-..|.++.|++ ++.+++.+.+++.+.-.|.....
T Consensus 225 ~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 225 TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred ccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 000001123467788886 45677777888888888877654
No 394
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.34 E-value=0.011 Score=42.43 Aligned_cols=39 Identities=38% Similarity=0.623 Sum_probs=34.8
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 000936 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1219)
Q Consensus 83 ~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd 121 (1219)
+++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677778999999999999999999999999999996
No 395
>PRK10115 protease 2; Provisional
Probab=96.30 E-value=5.3 Score=50.79 Aligned_cols=111 Identities=11% Similarity=0.091 Sum_probs=68.7
Q ss_pred CEEEEEEecCCCEEEEEEC-----CCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECC------CeEEEEE
Q 000936 53 PVRGVHFHKSQPLFVSGGD-----DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD------QTIRIWN 121 (1219)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs~-----Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~D------g~I~iwd 121 (1219)
.+..+.|||++++|+.+.+ ...|++-|+.+|..+........ ..++|++|++.|+.+..+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4677899999998887643 34788999988864332221211 469999999866655432 3688888
Q ss_pred CCCC--eEEEEEecCCCCeE-EEEEecCCCEEEEEEC---CCeEEEEECC
Q 000936 122 WQSR--TCISVLTGHNHYVM-CASFHPKEDLVVSASL---DQTVRVWDIG 165 (1219)
Q Consensus 122 ~~s~--~~i~~~~~h~~~V~-~l~~sp~~~~l~s~s~---dg~I~vwd~~ 165 (1219)
+.++ +-...+........ ....+.++++++..+. ++.+.+++..
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 8887 33444443333333 3333337776655443 3467888853
No 396
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.59 Score=56.34 Aligned_cols=104 Identities=13% Similarity=0.011 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHHHHHHcCChhHHHHHHHhcCCHHHHHHHHHHc
Q 000936 675 HWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESA 754 (1219)
Q Consensus 675 ~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~~~~~~~~~~~~~~al~lgd~~eai~i~~~~ 754 (1219)
.+...|..|...|+.+.|.+....-.+-..-.-|.+..++.+.+. +.+...+|....+++.+.+.+-..+-.++...
T Consensus 509 Sy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL---~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 509 SYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLAL---KKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred eHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHH---HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999988888777777777777777543 23456888888888888888888899999999
Q ss_pred CCChHHHHHHHhcCChHHHHHHHHHcC
Q 000936 755 GHLPLAYITASVHGLQDVAERLAAELG 781 (1219)
Q Consensus 755 g~~~~A~~la~~~g~~~~a~~l~~~~~ 781 (1219)
...++|.-+++.+.....-..+..-++
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~ 612 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYN 612 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhh
Confidence 999999999988877555555554444
No 397
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.28 E-value=1.5 Score=50.32 Aligned_cols=257 Identities=16% Similarity=0.112 Sum_probs=122.6
Q ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEECCCCeE---EEEe----cccCCCEEEEEEecC----CCEEEEEECC-------
Q 000936 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL---IDRF----DEHDGPVRGVHFHKS----QPLFVSGGDD------- 72 (1219)
Q Consensus 11 ~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~---i~~l----~~h~~~V~~l~fsp~----~~~Lasgs~D------- 72 (1219)
.-+.|+|.|||+.+++ ...|.|++++ .++.. +..+ .........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4688999999877664 5799999999 56654 3333 234556899999994 3333333321
Q ss_pred -CeEEEEEcCCC-------eEEE-EEcc---CCCCEEEEEEcCCCCEEEEEECCC-------------eEEEEECCCCeE
Q 000936 73 -YKIKVWNYKMH-------RCLF-TLLG---HLDYIRTVQFHHEYPWIVSASDDQ-------------TIRIWNWQSRTC 127 (1219)
Q Consensus 73 -g~I~vWd~~~~-------~~~~-~l~~---h~~~I~~l~fs~d~~~l~s~s~Dg-------------~I~iwd~~s~~~ 127 (1219)
..|.-|....+ +.+. .+.. ....-..|.|.||+.+.++.++.+ .|.-.+.. ++.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 24555554433 1121 2222 234567799999997666655433 22222322 110
Q ss_pred -------------EEEE-ecCCCCeEEEEEecC-CCEEEEE-ECCCeEEEEECCCCccccccCCcc-ceeec--cccccc
Q 000936 128 -------------ISVL-TGHNHYVMCASFHPK-EDLVVSA-SLDQTVRVWDIGALRKKTVSPADD-ILRLS--QMNTDL 188 (1219)
Q Consensus 128 -------------i~~~-~~h~~~V~~l~~sp~-~~~l~s~-s~dg~I~vwd~~~~~~~~~~~~~~-~~~~~--~~~~~~ 188 (1219)
...+ .++. ....++|+|. |++.++= +.++.=.|--+..+..-- .|... ..... ......
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYG-WP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYG-WPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B---TTTBSSSCSTTSS-ECTGS
T ss_pred CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCC-CCCCcCCCCCCCCcccccc
Confidence 0011 1222 2457899998 5544332 222222222222211100 00000 00000 000000
Q ss_pred cccccceEEEEEeecCCCeEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCCe-eeEEe-ecCCCCCeEEEEEccC
Q 000936 189 FGGVDAVVKYVLEGHDRGVNWAAFHP-------TLPLIVSGADDRQVKLWRMNETKA-WEVDT-LRGHMNNVSCVMFHAK 259 (1219)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~V~~l~~sp-------~g~~l~sg~~dg~I~iwd~~~~~~-~~~~~-~~~h~~~I~~l~~sp~ 259 (1219)
...........+. +...+..+.|.. .|.++++....+.|....+..... ..... +......+..+++.||
T Consensus 238 ~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 238 SCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp S-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 0000111222233 445666677764 345666666667888887764432 22223 2344558999999999
Q ss_pred CCEEEEEeCCCcEE
Q 000936 260 QDIIVSNSEDKSIR 273 (1219)
Q Consensus 260 g~~L~s~s~dg~I~ 273 (1219)
|.+.++.+.+|.|.
T Consensus 317 G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 317 GALYVSDDSDGKIY 330 (331)
T ss_dssp SEEEEEE-TTTTEE
T ss_pred CeEEEEECCCCeEe
Confidence 99999888888764
No 398
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=96.20 E-value=4.5 Score=49.08 Aligned_cols=44 Identities=9% Similarity=-0.163 Sum_probs=35.7
Q ss_pred HHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcC
Q 000936 738 ALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELG 781 (1219)
Q Consensus 738 al~lgd~~eai~i~~~~g~~~~A~~la~~~g~~~~a~~l~~~~~ 781 (1219)
..-.+...+|...|...|.+.+|...+++.++|.++..|+.+--
T Consensus 932 l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~ 975 (1243)
T COG5290 932 LVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEK 975 (1243)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhc
Confidence 44457778888888888889999999999999999988887644
No 399
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.20 E-value=2.9 Score=46.82 Aligned_cols=182 Identities=16% Similarity=0.212 Sum_probs=87.9
Q ss_pred EeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCC
Q 000936 222 GADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1219)
Q Consensus 222 g~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~ 301 (1219)
.+..|.| ....+.++.|... .....+.+..+..+++|+++++++......-||--...-...-+....++..+.|.|+
T Consensus 120 ~~~~G~i-y~T~DgG~tW~~~-~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~ 197 (302)
T PF14870_consen 120 AGDRGAI-YRTTDGGKTWQAV-VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD 197 (302)
T ss_dssp EETT--E-EEESSTTSSEEEE-E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT
T ss_pred EcCCCcE-EEeCCCCCCeeEc-ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCC
Confidence 3444543 2234455666433 3455577899999999999988877666678874432222233345678999999999
Q ss_pred CCEEEEEeCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEE
Q 000936 302 MNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVL 381 (1219)
Q Consensus 302 ~~~la~g~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ll 381 (1219)
+.+..++ .++.+.+.- ......-|... ...++..+ ..+..++|.+++...+
T Consensus 198 ~~lw~~~-~Gg~~~~s~-----------------~~~~~~~w~~~------~~~~~~~~-----~~~ld~a~~~~~~~wa 248 (302)
T PF14870_consen 198 GNLWMLA-RGGQIQFSD-----------------DPDDGETWSEP------IIPIKTNG-----YGILDLAYRPPNEIWA 248 (302)
T ss_dssp S-EEEEE-TTTEEEEEE------------------TTEEEEE---------B-TTSS-------S-EEEEEESSSS-EEE
T ss_pred CCEEEEe-CCcEEEEcc-----------------CCCCccccccc------cCCcccCc-----eeeEEEEecCCCCEEE
Confidence 8887765 333322211 12233334321 11111111 1578899999877554
Q ss_pred EEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEE
Q 000936 382 ICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVK 439 (1219)
Q Consensus 382 v~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iw 439 (1219)
+ ++ +|.+ ++..+...+.+..............+.|.++.+-++.+. +|.|.-|
T Consensus 249 ~-gg--~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~-~G~ll~~ 301 (302)
T PF14870_consen 249 V-GG--SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ-DGVLLRY 301 (302)
T ss_dssp E-ES--TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S-TTEEEEE
T ss_pred E-eC--CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECC-CcEEEEe
Confidence 3 33 2443 444454444332222233445678899998888888887 7877655
No 400
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.20 E-value=0.12 Score=66.22 Aligned_cols=130 Identities=8% Similarity=0.035 Sum_probs=100.1
Q ss_pred hHHhhcCCHHHHHHHHHHhC--ChhHHHHHHHHHHHcCChhHHHHHHHhhcC---------cchhhHHHHhcCCHHHHHH
Q 000936 652 NLALESGNIQIAVASAKEID--EKDHWYRLGVEALRQGNAGIVEYAYQRTKN---------FERLSFLYLITGNMDKLSK 720 (1219)
Q Consensus 652 ~lal~~g~~~~A~~~a~~l~--~~~~w~~La~~al~~g~~~~Ae~~y~~~~d---------~~~l~~l~~~~g~~~~l~k 720 (1219)
++..++|+++.|.+....+. +...|..|...+.+.|+++.|...|.++.. |..+...|+..|+.+++++
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 45667899999999988764 456899999999999999999999988743 3345556777899998888
Q ss_pred HHHHHHHcCC------hhHHHHHHHhcCCHHHHHHHHHHcCCCh-----HHHHHHHhcCChHHHHHHHHHcC
Q 000936 721 MLKIAEVKND------VMGQFHNALYLGDVKERVKILESAGHLP-----LAYITASVHGLQDVAERLAAELG 781 (1219)
Q Consensus 721 l~~~~~~~~~------~~~~~~~al~lgd~~eai~i~~~~g~~~-----~A~~la~~~g~~~~a~~l~~~~~ 781 (1219)
+.+.....+- .......+.+.|++++|.++|.+....+ --+..+-.+|+.++|.++.++.-
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7766555542 2444556888999999999998765443 45556778999999999998753
No 401
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.07 Score=66.18 Aligned_cols=102 Identities=13% Similarity=0.228 Sum_probs=77.0
Q ss_pred CCCEEEEEECCCeEEEEEcCCC-eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEE
Q 000936 62 SQPLFVSGGDDYKIKVWNYKMH-RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMC 140 (1219)
Q Consensus 62 ~~~~Lasgs~Dg~I~vWd~~~~-~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~ 140 (1219)
.+..++.|++.|.+-..|+... ++...-..-.++|++++|+.+|..++.|-.+|.|.+||...++.++.+..|..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4557888999999988887643 111222224569999999999999999999999999999999999998877776665
Q ss_pred EEE---ecCCCEEEEEECCCeEEEEECC
Q 000936 141 ASF---HPKEDLVVSASLDQTVRVWDIG 165 (1219)
Q Consensus 141 l~~---sp~~~~l~s~s~dg~I~vwd~~ 165 (1219)
+-+ ..++..++++...|. +|.+.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 544 345556888877776 66653
No 402
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.17 E-value=1.7 Score=47.45 Aligned_cols=224 Identities=13% Similarity=0.077 Sum_probs=126.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCC------C-eeEEEEec-----CCCCEEEEEEeCCCCEEEEEeCCCeeEE
Q 000936 249 NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK------R-TGVQTFRR-----EHDRFWILASHPEMNLLAAGHDSGMIVF 316 (1219)
Q Consensus 249 ~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~------~-~~~~~~~~-----~~~~i~~l~~sp~~~~la~g~d~gi~v~ 316 (1219)
.+-+.++++|.+.+-++....+...+||... . ..+.++.. .....+.+.|+....+.+++...
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~----- 97 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI----- 97 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc-----
Confidence 3467899999998888888889999999861 1 22333332 12345666666655544443210
Q ss_pred EecCCcceEEecCCEEEEEeCCeEEEEEecCCcc---eeeEeecCCCCCCCCCCCeEEEEccC--CCEEEEEEeCCCCEE
Q 000936 317 KLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD---TQVIPIRRPGSTSLNQSPRTLSYSPT--ENAVLICSDVDGGSY 391 (1219)
Q Consensus 317 ~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~spd--g~~llv~~~~~dg~i 391 (1219)
+-....++...+++|.-|...-+.. .....+....... --+.+++... +.+| ....-..++|
T Consensus 98 ---------~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~ga---vYkGLAi~~~~~~~~L-YaadF~~g~I 164 (336)
T TIGR03118 98 ---------TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGN---VYKGLAVGPTGGGDYL-YAANFRQGRI 164 (336)
T ss_pred ---------ccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcc---eeeeeEEeecCCCceE-EEeccCCCce
Confidence 0011234455899999998654333 2223332211101 3344555533 4444 4444467899
Q ss_pred EEEEecCCCCC---CCccc-cccccC--cee------EEEEE---eCCeEEEEEcCCCEEEEEecCCceeEeeeCCc---
Q 000936 392 ELYVIPKDSIG---RGDSV-QDAKKG--LGG------SAIFI---ARNRFAVLDKSSNQVLVKNLKNEVVKKSILPI--- 453 (1219)
Q Consensus 392 ~l~~~~~~~~~---~~~~~-~~~~~~--~i~------~~~fs---~d~~~l~~~~~dg~I~Iwdl~~~~~~~i~~~~--- 453 (1219)
.+|+-.-.... ....+ +..... .|. -+.|. ++.+.-+.+...|.|-+||+.+..++++....
T Consensus 165 DVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LN 244 (336)
T TIGR03118 165 DVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLN 244 (336)
T ss_pred EEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCccc
Confidence 99975433210 00000 000000 010 11111 22222333334578999999999999986555
Q ss_pred ceEEEEEeC------CCcEEEE--eCCeEEEEEcCCCeEEEEEec
Q 000936 454 AADAIFYAG------TGNLLCR--AEDRVVIFDLQQRLVLGDLQT 490 (1219)
Q Consensus 454 ~v~~l~~s~------dg~~L~s--~d~~I~l~dl~~~~~l~~~~~ 490 (1219)
..+.|+..| .|.+|+- +||+|..||..+++.+..+..
T Consensus 245 aPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 245 APWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 566676654 4778876 599999999999998877765
No 403
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.17 E-value=1.6 Score=47.92 Aligned_cols=192 Identities=14% Similarity=0.140 Sum_probs=104.9
Q ss_pred CeEEEEEccCCCEEEEEe---CCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEE
Q 000936 250 NVSCVMFHAKQDIIVSNS---EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFA 326 (1219)
Q Consensus 250 ~I~~l~~sp~g~~L~s~s---~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s 326 (1219)
.+.+.+++++++.++... ....+.++.. +....... ....+..-+|++++...++......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~------------- 88 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGG------------- 88 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCc-------------
Confidence 688999999999887766 3334555543 33332222 3336777888888877766553222
Q ss_pred ecCCEEEEEeCCeEEEE-EecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEe-CCCCEEEEEEecCCCCC--
Q 000936 327 VSGDSLFYAKDRFLRYY-EFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSD-VDGGSYELYVIPKDSIG-- 402 (1219)
Q Consensus 327 ~~~~~l~~~~d~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~-~~dg~i~l~~~~~~~~~-- 402 (1219)
.+++ +..++... ...+..... ...|+.+.+||||.++++... ..++.+.+-.+.....+
T Consensus 89 -------------~~~~~~~~~g~~~-~~~v~~~~~---~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~ 151 (253)
T PF10647_consen 89 -------------VRVVRDSASGTGE-PVEVDWPGL---RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP 151 (253)
T ss_pred -------------eEEEEecCCCcce-eEEeccccc---CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc
Confidence 2222 11222211 111221111 117899999999999988873 23467777766554444
Q ss_pred -CCcc---ccccccCceeEEEEEeCCeEEEEEcCCCE-EEE-EecCCceeEee-eCCcceEEEEEeCCCc-EEEEeCCeE
Q 000936 403 -RGDS---VQDAKKGLGGSAIFIARNRFAVLDKSSNQ-VLV-KNLKNEVVKKS-ILPIAADAIFYAGTGN-LLCRAEDRV 474 (1219)
Q Consensus 403 -~~~~---~~~~~~~~i~~~~fs~d~~~l~~~~~dg~-I~I-wdl~~~~~~~i-~~~~~v~~l~~s~dg~-~L~s~d~~I 474 (1219)
.+.. ........++.+.|.+++++++.+...+. +.. ....+.....+ .....+..+....+.. ++++.++.+
T Consensus 152 ~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t~~~~~ 231 (253)
T PF10647_consen 152 RRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVTDDGGV 231 (253)
T ss_pred ceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEECCCcE
Confidence 1111 11222456889999999999888775433 333 44554444444 2222333344444322 334444444
No 404
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.11 E-value=0.12 Score=68.08 Aligned_cols=177 Identities=12% Similarity=0.067 Sum_probs=109.6
Q ss_pred HHhccCHHHHHHhhhcCc--------ccchhHHHHHHhCCChhhhhccccCcch------------hhhHHhhcCCHHHH
Q 000936 604 SLLRKRYDHVMSMIRNSQ--------LCGQAMIAYLQQKGFPEVALHFVKDERT------------RFNLALESGNIQIA 663 (1219)
Q Consensus 604 ~l~~~~~~~a~~~i~~~~--------~~~~~i~~~l~~~g~~e~Al~~~~d~~~------------rf~lal~~g~~~~A 663 (1219)
....++++.|.+++..-. .....++..+.+.|..+.|.+++++... -.....+.|+++.|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 344577777765553211 1123455666677777777766643321 12234567888888
Q ss_pred HHHHHHh------CChhHHHHHHHHHHHcCChhHHHHHHHhhcC-----------cchhhHHHHhcCCHHHHHHHHHHHH
Q 000936 664 VASAKEI------DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN-----------FERLSFLYLITGNMDKLSKMLKIAE 726 (1219)
Q Consensus 664 ~~~a~~l------~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d-----------~~~l~~l~~~~g~~~~l~kl~~~~~ 726 (1219)
++....+ .+...|..|...+.+.|+++.|.+.|..+.. |..+...|+..|+++++.++.+...
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777654 3456788888888888888888888877742 3345666777888888777766555
Q ss_pred HcCC------hhHHHHHHHhcCCHHHHHHHHHHcCC---------ChHHHHHHHhcCChHHHHHHHHHc
Q 000936 727 VKND------VMGQFHNALYLGDVKERVKILESAGH---------LPLAYITASVHGLQDVAERLAAEL 780 (1219)
Q Consensus 727 ~~~~------~~~~~~~al~lgd~~eai~i~~~~g~---------~~~A~~la~~~g~~~~a~~l~~~~ 780 (1219)
..+- +......+...|++++|.++|.+.-. +..-+..+...|..++|.++.+.+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5542 13334446677888888888766432 123344556677777777777654
No 405
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.11 E-value=0.078 Score=68.03 Aligned_cols=130 Identities=12% Similarity=0.063 Sum_probs=91.8
Q ss_pred hhHHhhcCCHHHHHHHHHHhC--ChhHHHHHHHHHHHcCChhHHHHHHHhhcC---------cchhhHHHHhcCCHHHHH
Q 000936 651 FNLALESGNIQIAVASAKEID--EKDHWYRLGVEALRQGNAGIVEYAYQRTKN---------FERLSFLYLITGNMDKLS 719 (1219)
Q Consensus 651 f~lal~~g~~~~A~~~a~~l~--~~~~w~~La~~al~~g~~~~Ae~~y~~~~d---------~~~l~~l~~~~g~~~~l~ 719 (1219)
.++..++|+++.|.+...++. +...|..|...+.+.|+.+.|.+.|.++.. |..+...+...|+.++..
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHH
Confidence 345566889999988887754 445789999999999999999999988755 444555566788888877
Q ss_pred HHHHHHHHc-CC------hhHHHHHHHhcCCHHHHHHHHHHcCCCh------HHHHHHHhcCChHHHHHHHHHc
Q 000936 720 KMLKIAEVK-ND------VMGQFHNALYLGDVKERVKILESAGHLP------LAYITASVHGLQDVAERLAAEL 780 (1219)
Q Consensus 720 kl~~~~~~~-~~------~~~~~~~al~lgd~~eai~i~~~~g~~~------~A~~la~~~g~~~~a~~l~~~~ 780 (1219)
++.+..... +- +......+...|++++|.+++.+.+..+ --+..++.+|..+.+.+++++.
T Consensus 447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 776644322 11 2233445777899999999988876533 2344566788888888887764
No 406
>PHA02713 hypothetical protein; Provisional
Probab=96.10 E-value=0.36 Score=59.68 Aligned_cols=65 Identities=8% Similarity=0.060 Sum_probs=38.5
Q ss_pred CCCEEEEEeCC------CeEEEEECCC-CCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCC--cEEEEeCCCCe
Q 000936 215 TLPLIVSGADD------RQVKLWRMNE-TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK--SIRVWDVTKRT 281 (1219)
Q Consensus 215 ~g~~l~sg~~d------g~I~iwd~~~-~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg--~I~iwdl~~~~ 281 (1219)
++.+.+.|+.+ ..+..||..+ .+-..+..+.........+.+ ++.+.++|+.+| ++-.||..+.+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 45666777654 2467888887 443233344333333333333 678888998888 56667766544
No 407
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.08 E-value=2.9 Score=45.69 Aligned_cols=235 Identities=14% Similarity=0.115 Sum_probs=136.5
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEEcC-------CCeEEEEEcc-----CCCCEEEEEEcCCCC------------EEE
Q 000936 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYK-------MHRCLFTLLG-----HLDYIRTVQFHHEYP------------WIV 109 (1219)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~-------~~~~~~~l~~-----h~~~I~~l~fs~d~~------------~l~ 109 (1219)
-+.|+++|.+.+-++....+...+||.. ....+.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4789999999988888888999999986 1223444432 234677888875433 367
Q ss_pred EEECCCeEEEEECCCCeE-----EEEEe-cCCCCe-EEEEEecC--CCEEEEE-ECCCeEEEEECCCCccccccCCccce
Q 000936 110 SASDDQTIRIWNWQSRTC-----ISVLT-GHNHYV-MCASFHPK--EDLVVSA-SLDQTVRVWDIGALRKKTVSPADDIL 179 (1219)
Q Consensus 110 s~s~Dg~I~iwd~~s~~~-----i~~~~-~h~~~V-~~l~~sp~--~~~l~s~-s~dg~I~vwd~~~~~~~~~~~~~~~~ 179 (1219)
.+++||+|.-|...-+.. ...+. +....| ..+++... +++|..+ -..++|.|+|-.-.+.... ..+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~----g~F 180 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP----GSF 180 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC----CCc
Confidence 889999999998542221 12222 112233 34555433 4555444 4678899998654322110 000
Q ss_pred eecc--ccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEc
Q 000936 180 RLSQ--MNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH 257 (1219)
Q Consensus 180 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~s 257 (1219)
.-+. .+..-|+ ....+..--|+...-.++.+.=+.|..-|.|-+||....-.. ...-.+.-+..+.++..
T Consensus 181 ~DP~iPagyAPFn-------Iqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~-r~as~g~LNaPWG~a~A 252 (336)
T TIGR03118 181 IDPALPAGYAPFN-------VQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLR-RVASSGRLNAPWGLAIA 252 (336)
T ss_pred cCCCCCCCCCCcc-------eEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEE-EeccCCcccCCceeeeC
Confidence 0000 0000000 011111122333333444444555666789999998765421 11234455667788876
Q ss_pred c------CCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC------CEEEEEEeC
Q 000936 258 A------KQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD------RFWILASHP 300 (1219)
Q Consensus 258 p------~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~------~i~~l~~sp 300 (1219)
| .+.+|+-.-.||+|..||..+++.+..+....+ ..|.+++..
T Consensus 253 Pa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 253 PESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 6 577888888899999999999988877765543 356777655
No 408
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.06 E-value=0.1 Score=65.01 Aligned_cols=143 Identities=12% Similarity=0.174 Sum_probs=99.9
Q ss_pred CCEEEEE-ECCCeEEEEECCCCeEEEEecccCCC-EEEEEEec-----CCCEEEEEECCCeEEEEEcCCC--eEEEEE--
Q 000936 21 RPWILAS-LHSGVIQLWDYRMGTLIDRFDEHDGP-VRGVHFHK-----SQPLFVSGGDDYKIKVWNYKMH--RCLFTL-- 89 (1219)
Q Consensus 21 g~~Lasg-~~dg~I~iWd~~~g~~i~~l~~h~~~-V~~l~fsp-----~~~~Lasgs~Dg~I~vWd~~~~--~~~~~l-- 89 (1219)
.+.|+.. .....|+-.|++.|+.+..++.|... |..++=.. +..--..|-.+..+..||.+-. +++..-
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444433 34578999999999999999877654 65554321 1224566777789999998743 233211
Q ss_pred -ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECC
Q 000936 90 -LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (1219)
Q Consensus 90 -~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~ 165 (1219)
-......+|++-+.+| +||+|+.+|.||+||--..+....+.+-..+|..+..+.||++++..+ +..+.+++..
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 1233467788877777 799999999999999443333445567789999999999999888776 5678888763
No 409
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.02 E-value=0.11 Score=68.15 Aligned_cols=177 Identities=12% Similarity=0.084 Sum_probs=105.9
Q ss_pred HHhccCHHHHHHhhhcC----c----ccchhHHHHHHhCCChhhhhccccCcch--------------hhhHHhhcCCHH
Q 000936 604 SLLRKRYDHVMSMIRNS----Q----LCGQAMIAYLQQKGFPEVALHFVKDERT--------------RFNLALESGNIQ 661 (1219)
Q Consensus 604 ~l~~~~~~~a~~~i~~~----~----~~~~~i~~~l~~~g~~e~Al~~~~d~~~--------------rf~lal~~g~~~ 661 (1219)
....|++++|++++..- - ..-..++..+.+.|..+.|+++..+... -......+|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 34456666665544321 0 0112445555666666666665543211 123345677777
Q ss_pred HHHHHHHHhC------ChhHHHHHHHHHHHcCChhHHHHHHHhhcC---------cchhhHHHHhcCCHHHHHHHHHHHH
Q 000936 662 IAVASAKEID------EKDHWYRLGVEALRQGNAGIVEYAYQRTKN---------FERLSFLYLITGNMDKLSKMLKIAE 726 (1219)
Q Consensus 662 ~A~~~a~~l~------~~~~w~~La~~al~~g~~~~Ae~~y~~~~d---------~~~l~~l~~~~g~~~~l~kl~~~~~ 726 (1219)
.|.+..+.+. +...|..|...+.+.|+++.|...|.++.. |..+...|...|+.+++.++.+...
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7777776542 245677777777777777777777777653 3355556667777777776666554
Q ss_pred HcCC------hhHHHHHHHhcCCHHHHHHHHHHcC---C------ChHHHHHHHhcCChHHHHHHHHHc
Q 000936 727 VKND------VMGQFHNALYLGDVKERVKILESAG---H------LPLAYITASVHGLQDVAERLAAEL 780 (1219)
Q Consensus 727 ~~~~------~~~~~~~al~lgd~~eai~i~~~~g---~------~~~A~~la~~~g~~~~a~~l~~~~ 780 (1219)
..+- +......+...|++++|.++|.+.. . |.--+..+...|..++|.++.+++
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4442 1333344667788888888887542 1 223445556778888888888764
No 410
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=3 Score=45.04 Aligned_cols=185 Identities=11% Similarity=0.125 Sum_probs=105.8
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEeCCCCEEEEEe-CCCeeEEEecCCcc---
Q 000936 248 MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH-DSGMIVFKLERERP--- 323 (1219)
Q Consensus 248 ~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~-d~gi~v~~l~~~~~--- 323 (1219)
.+-+..+.++ +++...+..+.-++|.|+.+.........-+-.-..-.|.-.|++.-+.. ++++.+.++.....
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 3445566675 56777777777899999987654433322221112333444566655554 88888888876542
Q ss_pred ------------eEEecCCEEEEE-eCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCCCE
Q 000936 324 ------------AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGS 390 (1219)
Q Consensus 324 ------------~~s~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~dg~ 390 (1219)
....+|++.+++ .++-+.+.|+.......+..-...+. .+.++..+++-.++++... -
T Consensus 164 agrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~-----g~~sv~vsdnr~y~vvy~e----g 234 (370)
T COG5276 164 AGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGP-----GTYSVSVSDNRAYLVVYDE----G 234 (370)
T ss_pred eeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCC-----ceEEEEecCCeeEEEEccc----c
Confidence 345678888888 99999999999865544443333221 6777877777555444322 3
Q ss_pred EEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCCc
Q 000936 391 YELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE 444 (1219)
Q Consensus 391 i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~ 444 (1219)
+.+-+.+...........+. ........+.-.++++.....+.-+.+-|+.+.
T Consensus 235 vlivd~s~~ssp~~~gsyet-~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 235 VLIVDVSGPSSPTVFGSYET-SNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred eEEEecCCCCCceEeecccc-CCcccccceecccceeeeeccccCceeEeccCC
Confidence 44555555433222211111 111111133334556666665666767776643
No 411
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.11 Score=59.76 Aligned_cols=144 Identities=13% Similarity=0.159 Sum_probs=101.1
Q ss_pred CCCEEE-EEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCE-------EEEEECCCeEEEEEcCCC-e-EEEEE
Q 000936 20 KRPWIL-ASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPL-------FVSGGDDYKIKVWNYKMH-R-CLFTL 89 (1219)
Q Consensus 20 dg~~La-sg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~-------Lasgs~Dg~I~vWd~~~~-~-~~~~l 89 (1219)
+.+.|+ ++.....++-.|++.|+.+..++-|.. |+-+.+.|+.+. -+.|-+|..|.-||.+-. + .+..-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 344456688889999999999988877 888888887641 244567889999998622 2 22222
Q ss_pred ccCC----CCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECC
Q 000936 90 LGHL----DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (1219)
Q Consensus 90 ~~h~----~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~ 165 (1219)
.+|. ....|.+-..+| +|++||.+|.||+||--..+....+.+...+|..+..+.+|++|+..+ +..+.+.++.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 3332 234555555555 899999999999999633334445678889999999999999887665 6777777764
Q ss_pred C
Q 000936 166 A 166 (1219)
Q Consensus 166 ~ 166 (1219)
-
T Consensus 501 ~ 501 (644)
T KOG2395|consen 501 I 501 (644)
T ss_pred c
Confidence 3
No 412
>PRK13684 Ycf48-like protein; Provisional
Probab=95.81 E-value=4.9 Score=46.20 Aligned_cols=269 Identities=9% Similarity=0.054 Sum_probs=134.1
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEEC-CCCeEEEEec----ccCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 000936 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDY-RMGTLIDRFD----EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~Lasg~~dg~I~iWd~-~~g~~i~~l~----~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~ 83 (1219)
...+.+|+|..+..-+++| ++|.| |.. +.|+.-.... ....++.++.|.++. .+++ +..+.|..- -+.|
T Consensus 45 ~~~l~~v~F~d~~~g~avG-~~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~-~~~~-G~~g~i~~S-~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVG-SNRTL--LETNDGGETWEERSLDLPEENFRLISISFKGDE-GWIV-GQPSLLLHT-TDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEE-CCCEE--EEEcCCCCCceECccCCcccccceeeeEEcCCc-EEEe-CCCceEEEE-CCCC
Confidence 4578999998766666666 46654 332 2332222211 123457788886543 3444 444543332 1222
Q ss_pred eEEEEEc---cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-ecCCCCeEEEEEecCCCEEEEEECCCeE
Q 000936 84 RCLFTLL---GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-TGHNHYVMCASFHPKEDLVVSASLDQTV 159 (1219)
Q Consensus 84 ~~~~~l~---~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~-~~h~~~V~~l~~sp~~~~l~s~s~dg~I 159 (1219)
+.-..+. ........+.....+..++ ++..|.|..=+ +.|+.-..+ ..-...+.++.+.|++.+++++. .|.+
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~-~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i 195 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGPGTAEM-ATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNF 195 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECCCccee-eeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceE
Confidence 2111111 1111112222222222233 33344443222 223222221 22345688899999886665554 5544
Q ss_pred EE-EECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 000936 160 RV-WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1219)
Q Consensus 160 ~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~ 238 (1219)
.. +|-.. +. ...........++.+.+.++++.++++ ..|.+++=..+.+..
T Consensus 196 ~~s~~~gg-~t--------------------------W~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 196 YSTWEPGQ-TA--------------------------WTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred EEEcCCCC-Ce--------------------------EEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 32 22111 00 111122344678899999998876665 457664333555555
Q ss_pred eeEEeec--CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEec---CCCCEEEEEEeCCCCEEEEEeCCCe
Q 000936 239 WEVDTLR--GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR---EHDRFWILASHPEMNLLAAGHDSGM 313 (1219)
Q Consensus 239 ~~~~~~~--~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~---~~~~i~~l~~sp~~~~la~g~d~gi 313 (1219)
|...... .....+..+.+.|++..+++ +.+|.+. .....++.-...+. ....++.+.+..+++.+++|..+.+
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 4432221 12235788899988775554 4566554 34444444333321 2235778888888888888776555
Q ss_pred eEE
Q 000936 314 IVF 316 (1219)
Q Consensus 314 ~v~ 316 (1219)
..+
T Consensus 326 l~~ 328 (334)
T PRK13684 326 LRY 328 (334)
T ss_pred EEe
Confidence 443
No 413
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.74 E-value=0.2 Score=59.29 Aligned_cols=178 Identities=17% Similarity=0.150 Sum_probs=106.6
Q ss_pred HHHhccCHHHHHHhhhcC----cccc-------hhHHHHHHhCCChhhhhccccCcch-----------hhhHHhhcCCH
Q 000936 603 LSLLRKRYDHVMSMIRNS----QLCG-------QAMIAYLQQKGFPEVALHFVKDERT-----------RFNLALESGNI 660 (1219)
Q Consensus 603 ~~l~~~~~~~a~~~i~~~----~~~~-------~~i~~~l~~~g~~e~Al~~~~d~~~-----------rf~lal~~g~~ 660 (1219)
+....|++++|...++.. .... ..+...+.+.|..+.|+..++.... ...+..+.|++
T Consensus 78 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 157 (389)
T PRK11788 78 LFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDW 157 (389)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchH
Confidence 455678888887655431 1110 1123334566777777655432211 13345667888
Q ss_pred HHHHHHHHHhCC----------hhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhhHHHHhcCCHHHHHHHH
Q 000936 661 QIAVASAKEIDE----------KDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSKML 722 (1219)
Q Consensus 661 ~~A~~~a~~l~~----------~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~~l~kl~ 722 (1219)
+.|.+.++.+-. ...|..+|..++.+|+++.|+.+|.++-.. -.+..+|...|+.+++.++.
T Consensus 158 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 237 (389)
T PRK11788 158 QKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEAL 237 (389)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888765411 124566788888889999998888876322 24556677788888877776
Q ss_pred HHHHHcC-Ch-----hHHHHHHHhcCCHHHHHHHHHHcCC----ChHHH---HHHHhcCChHHHHHHHHHc
Q 000936 723 KIAEVKN-DV-----MGQFHNALYLGDVKERVKILESAGH----LPLAY---ITASVHGLQDVAERLAAEL 780 (1219)
Q Consensus 723 ~~~~~~~-~~-----~~~~~~al~lgd~~eai~i~~~~g~----~~~A~---~la~~~g~~~~a~~l~~~~ 780 (1219)
+.+.... +. ......+...|++++|++.+.+.-. ...+. .+....|.+++|.++.++.
T Consensus 238 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 238 ERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred HHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6544322 21 1223456677888888888876432 11222 2344567788888877653
No 414
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.71 E-value=1.8 Score=49.80 Aligned_cols=174 Identities=15% Similarity=0.164 Sum_probs=83.5
Q ss_pred EEEcCCCCEEEEEeC------CCeEEEEECCCCCeeeEEeecC---CCCCeEEEEEccCCCEEEEEeC------------
Q 000936 210 AAFHPTLPLIVSGAD------DRQVKLWRMNETKAWEVDTLRG---HMNNVSCVMFHAKQDIIVSNSE------------ 268 (1219)
Q Consensus 210 l~~sp~g~~l~sg~~------dg~I~iwd~~~~~~~~~~~~~~---h~~~I~~l~~sp~g~~L~s~s~------------ 268 (1219)
+-.-|+|+.++++-. -|.+.++|-.+... ...... ...--..+.|.|..+.++|+..
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v--~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~ 212 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEV--KGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNP 212 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--E--EEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---T
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccc--cceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCCh
Confidence 444577877777532 24577777776554 333322 1233467788998888888752
Q ss_pred --------CCcEEEEeCCCCeeEEEEecCCCC--EEEEEEe--CCCCEEEEEe--CCCeeEEEe--------------cC
Q 000936 269 --------DKSIRVWDVTKRTGVQTFRREHDR--FWILASH--PEMNLLAAGH--DSGMIVFKL--------------ER 320 (1219)
Q Consensus 269 --------dg~I~iwdl~~~~~~~~~~~~~~~--i~~l~~s--p~~~~la~g~--d~gi~v~~l--------------~~ 320 (1219)
..++.+||+.+++.++++....+. ..-+.|. |+..+=.+|+ .+.+..|.- ..
T Consensus 213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 357999999999999998876543 3344444 3444433332 222222211 11
Q ss_pred C----------------------cceEEecCCEEEEE--eCCeEEEEEecCCcce-eeEeecCCCC-----------CCC
Q 000936 321 E----------------------RPAFAVSGDSLFYA--KDRFLRYYEFSTQKDT-QVIPIRRPGS-----------TSL 364 (1219)
Q Consensus 321 ~----------------------~~~~s~~~~~l~~~--~d~~i~v~d~~~~~~~-~~~~~~~~~~-----------~~~ 364 (1219)
. ...+|.+..+|+++ ..|.++.||+...... .+-++.-.+. ..+
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence 0 01467788889888 8999999999873322 2222211110 012
Q ss_pred CCCCeEEEEccCCCEEEEEEe
Q 000936 365 NQSPRTLSYSPTENAVLICSD 385 (1219)
Q Consensus 365 ~~~i~~l~~spdg~~llv~~~ 385 (1219)
.+.+.-+..|.||+++.++++
T Consensus 373 ~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -S----EEE-TTSSEEEEE--
T ss_pred CCCCCeEEEccCCeEEEEEee
Confidence 235577899999999988765
No 415
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.68 E-value=1.9 Score=46.67 Aligned_cols=156 Identities=7% Similarity=-0.022 Sum_probs=95.8
Q ss_pred CCEEEEEEeCCCCEEEEEECCC--eEEEEECCCCeEEEEeccc-CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE
Q 000936 10 NRVKGLSFHSKRPWILASLHSG--VIQLWDYRMGTLIDRFDEH-DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL 86 (1219)
Q Consensus 10 ~~V~~i~fspdg~~Lasg~~dg--~I~iWd~~~g~~i~~l~~h-~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~ 86 (1219)
.-..++.|..++.++-+.+.-| .|+.+|+.+|+......-. .----+++...+ ++....-.++...+||.++.+.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEE
Confidence 3456788877887777777665 7999999999877655321 112234444433 34455567899999999999998
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC-----CCCeEEEEEecCCCEEEEEECCCeEEE
Q 000936 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH-----NHYVMCASFHPKEDLVVSASLDQTVRV 161 (1219)
Q Consensus 87 ~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h-----~~~V~~l~~sp~~~~l~s~s~dg~I~v 161 (1219)
.++.- .+.=+.++ .++..|+.+.....++++|..+.+....+... -..++-+.|. +|...+-.-....|..
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 88863 34456666 55666777777788999999887776655422 1235556665 4544444444556666
Q ss_pred EECCCCccc
Q 000936 162 WDIGALRKK 170 (1219)
Q Consensus 162 wd~~~~~~~ 170 (1219)
.|..+++..
T Consensus 200 Idp~tG~V~ 208 (264)
T PF05096_consen 200 IDPETGKVV 208 (264)
T ss_dssp EETTT-BEE
T ss_pred EeCCCCeEE
Confidence 676665543
No 416
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.64 E-value=0.22 Score=53.43 Aligned_cols=128 Identities=20% Similarity=0.145 Sum_probs=87.2
Q ss_pred hHHhhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcC----------cchhhHHHHhcCCHH
Q 000936 652 NLALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKN----------FERLSFLYLITGNMD 716 (1219)
Q Consensus 652 ~lal~~g~~~~A~~~a~~-----l~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d----------~~~l~~l~~~~g~~~ 716 (1219)
.+....|+++.|.+..+. -++...|..+|..+..+|+++.|+..|.++-. +..+..+|...|+.+
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (234)
T TIGR02521 73 LYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD 152 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH
Confidence 345667888888877764 24467888999999999999999999988733 123456677889988
Q ss_pred HHHHHHHHHHHcCCh-----hHHHHHHHhcCCHHHHHHHHHHcCCC--------hHHHHHHHhcCChHHHHHHHHH
Q 000936 717 KLSKMLKIAEVKNDV-----MGQFHNALYLGDVKERVKILESAGHL--------PLAYITASVHGLQDVAERLAAE 779 (1219)
Q Consensus 717 ~l~kl~~~~~~~~~~-----~~~~~~al~lgd~~eai~i~~~~g~~--------~~A~~la~~~g~~~~a~~l~~~ 779 (1219)
++.+..+.+...... .....++...|++++|++.+.+.-+. -.+..++...|..+.|..+.+.
T Consensus 153 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 153 KAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 887766654332221 22334566779999999888874221 1345666677778877777654
No 417
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.59 E-value=0.76 Score=56.70 Aligned_cols=230 Identities=11% Similarity=0.054 Sum_probs=118.7
Q ss_pred CCCCEEEEEECCC------eEEEEECCCCeEEEEecc-cCCCEEEEEEecCCCEEEEEECC------CeEEEEEcCCCeE
Q 000936 19 SKRPWILASLHSG------VIQLWDYRMGTLIDRFDE-HDGPVRGVHFHKSQPLFVSGGDD------YKIKVWNYKMHRC 85 (1219)
Q Consensus 19 pdg~~Lasg~~dg------~I~iWd~~~g~~i~~l~~-h~~~V~~l~fsp~~~~Lasgs~D------g~I~vWd~~~~~~ 85 (1219)
..+..+++|+.++ .+..+|..+++......- +...-.+++.. ++.+.++||.| .++..||..+++.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 3456777887763 678889887754433321 22223444443 45788888888 3566777776653
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEEecCCCCeEE-EEEecCCCEEEEEECCC--
Q 000936 86 LFTLLGHLDYIRTVQFHHEYPWIVSASDDQ-----TIRIWNWQSRTCISVLTGHNHYVMC-ASFHPKEDLVVSASLDQ-- 157 (1219)
Q Consensus 86 ~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg-----~I~iwd~~s~~~i~~~~~h~~~V~~-l~~sp~~~~l~s~s~dg-- 157 (1219)
...-.-.......-.-.-+|...++|+.|| ++-.||..+.+--..-. ......+ ..-.-+|...++|+.++
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 321110111111111123567778888886 47778776554322111 1111111 11122577777777554
Q ss_pred ----eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCC-----eE
Q 000936 158 ----TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR-----QV 228 (1219)
Q Consensus 158 ----~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg-----~I 228 (1219)
++..||..+..-....+. ........ ++. -++.+.+.|+.|+ +|
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M-------------------------~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~V 493 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPM-------------------------NTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSV 493 (571)
T ss_pred cccceEEEEcCCCCceeecCCc-------------------------ccccccce-EEE-ECCEEEEECCccCCCccceE
Confidence 467777776543322211 00011111 222 2456778888776 37
Q ss_pred EEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCc-----EEEEeCCC
Q 000936 229 KLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS-----IRVWDVTK 279 (1219)
Q Consensus 229 ~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~-----I~iwdl~~ 279 (1219)
..||..+.+...+.........+..+.+ ++.+.++|+.||. |..||..+
T Consensus 494 E~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 494 ERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred EEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 7788888775333323333333333333 5677788877663 55555443
No 418
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.56 E-value=11 Score=48.23 Aligned_cols=111 Identities=10% Similarity=0.029 Sum_probs=75.1
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEecccCC--------CEEEEEEec----------------CCCEEEEEECCCeEE
Q 000936 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDG--------PVRGVHFHK----------------SQPLFVSGGDDYKIK 76 (1219)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~--------~V~~l~fsp----------------~~~~Lasgs~Dg~I~ 76 (1219)
+..|.+++.++.|.-.|..+|+.+-+++.+.. ..+.+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55777788889999999999999988753321 123444432 234788889999999
Q ss_pred EEEcCCCeEEEEEccCCCCEE-------------EEEEcC--CCCEEEEEEC----------CCeEEEEECCCCeEEEEE
Q 000936 77 VWNYKMHRCLFTLLGHLDYIR-------------TVQFHH--EYPWIVSASD----------DQTIRIWNWQSRTCISVL 131 (1219)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~I~-------------~l~fs~--d~~~l~s~s~----------Dg~I~iwd~~s~~~i~~~ 131 (1219)
-.|.++|+.+..+.. .+.|. .+.-.| .+..+++++. +|.|+-+|..+|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999877642 22211 011111 1234555542 688999999999998877
Q ss_pred e
Q 000936 132 T 132 (1219)
Q Consensus 132 ~ 132 (1219)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 5
No 419
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.53 E-value=7.2 Score=50.54 Aligned_cols=111 Identities=9% Similarity=0.042 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHcceeEecChhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCchhhhHHHHH
Q 000936 1005 EEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDPVRQQELAAY 1084 (1219)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~e~~r~~~~~~~~r~~el~~y 1084 (1219)
.-.+..|.-+...|++++|+..|++++...| ++.+ + .+.+|+. ...++. ..+.+ ..|
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P----~n~~----l--------~~~lA~l-~~~~g~----~~~A~--~~l 416 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAP----GNQG----L--------RIDYASV-LQARGW----PRAAE--NEL 416 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHH----H--------HHHHHHH-HHhcCC----HHHHH--HHH
Confidence 3345667777889999999999999999998 5421 1 1223332 222222 11211 122
Q ss_pred hcccCCChhhHHHHHHHHHHHHHHhhchHHHHHHHHHHhccCCCchhHHHHHHHHH
Q 000936 1085 FTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVL 1140 (1219)
Q Consensus 1085 ~t~~~l~~~h~~l~l~~a~~~~~k~~n~~~a~~~a~~ll~~~~~~~~~~~~a~~~~ 1140 (1219)
=.-..+.|.+..+=+..|| .+.+.++|..|....+++|+..|. .+..+.-++.+
T Consensus 417 ~~al~l~Pd~~~l~~~~a~-~al~~~~~~~A~~~~~~ll~~~Pd-~~~~~~~~~~~ 470 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAW-TALDLQEWRQMDVLTDDVVAREPQ-DPGVQRLARAR 470 (765)
T ss_pred HHHHhhCCCChHHHHHHHH-HHHHhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 2344566888887778888 799999999999999999999998 44444433333
No 420
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.50 E-value=0.25 Score=58.35 Aligned_cols=129 Identities=18% Similarity=0.114 Sum_probs=85.4
Q ss_pred hHHhhcCCHHHHHHHHHHhCC---------hhHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhhHHHHhcCC
Q 000936 652 NLALESGNIQIAVASAKEIDE---------KDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGN 714 (1219)
Q Consensus 652 ~lal~~g~~~~A~~~a~~l~~---------~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~ 714 (1219)
.+....|+++.|.+....+-. ...|..||..+..+|+++.|+.+|.++-+ +..+..+|...|+
T Consensus 77 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 156 (389)
T PRK11788 77 NLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD 156 (389)
T ss_pred HHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch
Confidence 345667888888887665311 24688899999999999999999988854 2234557778899
Q ss_pred HHHHHHHHHHHHHcCCh----------hHHHHHHHhcCCHHHHHHHHHHcCCCh--------HHHHHHHhcCChHHHHHH
Q 000936 715 MDKLSKMLKIAEVKNDV----------MGQFHNALYLGDVKERVKILESAGHLP--------LAYITASVHGLQDVAERL 776 (1219)
Q Consensus 715 ~~~l~kl~~~~~~~~~~----------~~~~~~al~lgd~~eai~i~~~~g~~~--------~A~~la~~~g~~~~a~~l 776 (1219)
++++.++.+........ ......+...|++++|++.|.+.-... ..-.++...|..++|.++
T Consensus 157 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 157 WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 98887766654333211 112223456799999999988743211 111345567888888888
Q ss_pred HHHc
Q 000936 777 AAEL 780 (1219)
Q Consensus 777 ~~~~ 780 (1219)
.++.
T Consensus 237 ~~~~ 240 (389)
T PRK11788 237 LERV 240 (389)
T ss_pred HHHH
Confidence 7653
No 421
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.44 E-value=0.017 Score=59.65 Aligned_cols=142 Identities=13% Similarity=0.110 Sum_probs=76.5
Q ss_pred EEEEEECCCeEEEEECCCCeEEEE-EecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeecccc
Q 000936 107 WIVSASDDQTIRIWNWQSRTCISV-LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185 (1219)
Q Consensus 107 ~l~s~s~Dg~I~iwd~~s~~~i~~-~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 185 (1219)
.+...+.||.|+-+++...+.... -.-|... + ....-+..+++|+.+|.|.+|..........
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~--~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d------------- 95 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG-Q--RVVTASAKLMVGTSDGAVYVFNWNLEGAHSD------------- 95 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc-e--eecccCceEEeecccceEEEecCCccchHHH-------------
Confidence 344456678887777654322111 0111111 1 1111246789999999999998763111100
Q ss_pred ccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCC-CCeEEEEEccCCCEEE
Q 000936 186 TDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM-NNVSCVMFHAKQDIIV 264 (1219)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~-~~I~~l~~sp~g~~L~ 264 (1219)
....+.......+.--.++.+..+++.||.|+.|++...+. +.....|. .++.....+..++.+.
T Consensus 96 ------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~--~g~~g~h~~~~~e~~ivv~sd~~i~ 161 (238)
T KOG2444|consen 96 ------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV--LGYVGQHNFESGEELIVVGSDEFLK 161 (238)
T ss_pred ------------hhhcccccceeccccccccceeEEeccCCceeeeccccCce--eeeeccccCCCcceeEEecCCceEE
Confidence 00111112222233334556888999999999999988875 55555565 4444444444445555
Q ss_pred EE--eCCCcEEEEeCC
Q 000936 265 SN--SEDKSIRVWDVT 278 (1219)
Q Consensus 265 s~--s~dg~I~iwdl~ 278 (1219)
.+ |.|..++.|++.
T Consensus 162 ~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 162 IADTSHDRVLKKWNVE 177 (238)
T ss_pred eeccccchhhhhcchh
Confidence 55 555555666554
No 422
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.32 E-value=13 Score=47.58 Aligned_cols=149 Identities=11% Similarity=0.080 Sum_probs=92.2
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEecccCCCEE-------------EEEEec--CCCEEEEEEC----------CCeE
Q 000936 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVR-------------GVHFHK--SQPLFVSGGD----------DYKI 75 (1219)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~-------------~l~fsp--~~~~Lasgs~----------Dg~I 75 (1219)
+..++.++.||.+.-.|.++|+.+..+. .++.|. .+.-+| .+..+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 4478888899999999999999998773 222221 111112 1335666642 6889
Q ss_pred EEEEcCCCeEEEEEccC---------CC--------CE-EEEEEcCCCCEEEEEE------------------CCCeEEE
Q 000936 76 KVWNYKMHRCLFTLLGH---------LD--------YI-RTVQFHHEYPWIVSAS------------------DDQTIRI 119 (1219)
Q Consensus 76 ~vWd~~~~~~~~~l~~h---------~~--------~I-~~l~fs~d~~~l~s~s------------------~Dg~I~i 119 (1219)
+-+|.++|+.+..+..- .+ .+ ..+++.++...++... ..+.|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 99999999998876421 00 11 2234444444333321 1356777
Q ss_pred EECCCCeEEEEEecCCCCeE---------EEEEec-CC---CEEEEEECCCeEEEEECCCCccc
Q 000936 120 WNWQSRTCISVLTGHNHYVM---------CASFHP-KE---DLVVSASLDQTVRVWDIGALRKK 170 (1219)
Q Consensus 120 wd~~s~~~i~~~~~h~~~V~---------~l~~sp-~~---~~l~s~s~dg~I~vwd~~~~~~~ 170 (1219)
.|.++|+....++...+.+. -+.+.. +| ..++.++.+|.+.+.|-++++..
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 78889988877754222111 122222 44 37899999999999999887654
No 423
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.31 E-value=0.33 Score=61.23 Aligned_cols=150 Identities=17% Similarity=0.113 Sum_probs=102.5
Q ss_pred HHhCCChhhhhcccc-----Ccch---hh---hHHhhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHH
Q 000936 631 LQQKGFPEVALHFVK-----DERT---RF---NLALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEY 694 (1219)
Q Consensus 631 l~~~g~~e~Al~~~~-----d~~~---rf---~lal~~g~~~~A~~~a~~-----l~~~~~w~~La~~al~~g~~~~Ae~ 694 (1219)
+..+|..+.|+..++ +|.. .+ .+....|+++.|...+.+ -+++..|..+|..+...|+++.|..
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 345666666665553 2321 12 234578999999988765 2568899999999999999999999
Q ss_pred HHHhhcCcc--------hhhHHHHhcCCHHHHHHHHHHHHHcC-Ch----hHHHHHHHhcCCHHHHHHHHHHcCCC----
Q 000936 695 AYQRTKNFE--------RLSFLYLITGNMDKLSKMLKIAEVKN-DV----MGQFHNALYLGDVKERVKILESAGHL---- 757 (1219)
Q Consensus 695 ~y~~~~d~~--------~l~~l~~~~g~~~~l~kl~~~~~~~~-~~----~~~~~~al~lgd~~eai~i~~~~g~~---- 757 (1219)
+|.++-..+ .+..+|...|+.+++....+.+.... +. .....++...|++++|++.|.++-..
T Consensus 421 ~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 421 DYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 998884322 35566778999999887777554322 21 22334577789999999998874332
Q ss_pred -----------hHHHHHHHhcCChHHHHHHHHHc
Q 000936 758 -----------PLAYITASVHGLQDVAERLAAEL 780 (1219)
Q Consensus 758 -----------~~A~~la~~~g~~~~a~~l~~~~ 780 (1219)
..|..+.+..|..++|.++.++.
T Consensus 501 ~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 501 KPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 12333445568888888888763
No 424
>PRK13684 Ycf48-like protein; Provisional
Probab=95.26 E-value=7.5 Score=44.70 Aligned_cols=145 Identities=14% Similarity=0.113 Sum_probs=84.4
Q ss_pred CCeEEEEccCCCEEEEEEeCCCCEEEEEEecCC-CCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC-Cc
Q 000936 367 SPRTLSYSPTENAVLICSDVDGGSYELYVIPKD-SIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NE 444 (1219)
Q Consensus 367 ~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~-~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~ 444 (1219)
.+..+.+.|++..+++... |.+.. ..... ..... ........+.++.+.++++.++.+. .|.+.+-+.+ +.
T Consensus 174 ~~~~i~~~~~g~~v~~g~~---G~i~~-s~~~gg~tW~~--~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~ 246 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSSR---GNFYS-TWEPGQTAWTP--HQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLE 246 (334)
T ss_pred eEEEEEECCCCeEEEEeCC---ceEEE-EcCCCCCeEEE--eeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCC
Confidence 6778889998865544322 44322 11111 11111 1122334678889999999888776 6776543344 33
Q ss_pred eeEeeeCC-----cceEEEEEeCCCcEEEEeCCeEEEEEcCCCeEEEEEec-----CCeeEEEEcCCCCEEEEEeCCeEE
Q 000936 445 VVKKSILP-----IAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQT-----PFVKYVVWSNDMESVALLSKHAII 514 (1219)
Q Consensus 445 ~~~~i~~~-----~~v~~l~~s~dg~~L~s~d~~I~l~dl~~~~~l~~~~~-----~~v~~v~ws~dg~~la~~s~~~i~ 514 (1219)
.-..+..+ ..+..+.+.+++.+++.+.....+.....|+....... .....+.+..+++.++++....|.
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il 326 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLL 326 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEE
Confidence 22222222 25788899999888888755444566666665555432 246677777777777766666665
Q ss_pred EEec
Q 000936 515 IASK 518 (1219)
Q Consensus 515 i~~~ 518 (1219)
-++.
T Consensus 327 ~~~~ 330 (334)
T PRK13684 327 RYVG 330 (334)
T ss_pred EecC
Confidence 5543
No 425
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.17 E-value=3.2 Score=43.23 Aligned_cols=95 Identities=8% Similarity=-0.003 Sum_probs=64.8
Q ss_pred eEEEEEcCCCCEEE-EEeCCCeEEEEE--CCCCCee---eEEeecC----CCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 000936 207 VNWAAFHPTLPLIV-SGADDRQVKLWR--MNETKAW---EVDTLRG----HMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (1219)
Q Consensus 207 V~~l~~sp~g~~l~-sg~~dg~I~iwd--~~~~~~~---~~~~~~~----h~~~I~~l~~sp~g~~L~s~s~dg~I~iwd 276 (1219)
-+.++|+.+.+.+. +-+.+-.|.-|| ..++... .+..++. ..-....++...+|.+.++.-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 35678887766554 444566776777 3333221 1222322 111123456667888889888899999999
Q ss_pred CCCCeeEEEEecCCCCEEEEEEeCC
Q 000936 277 VTKRTGVQTFRREHDRFWILASHPE 301 (1219)
Q Consensus 277 l~~~~~~~~~~~~~~~i~~l~~sp~ 301 (1219)
..+|+.+.+++.+..++++++|--.
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCC
Confidence 9999999999999999999998653
No 426
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=0.28 Score=56.47 Aligned_cols=139 Identities=15% Similarity=0.197 Sum_probs=95.9
Q ss_pred EEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCC-------EEEEEECCCeEEEEECCC-Ce-EEEEEecCC
Q 000936 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-------WIVSASDDQTIRIWNWQS-RT-CISVLTGHN 135 (1219)
Q Consensus 65 ~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~-------~l~s~s~Dg~I~iwd~~s-~~-~i~~~~~h~ 135 (1219)
+|.++.....++--|++.|+.+.++.-|.+ |.-+.+.|+.+ .-+.|-.|..|.-||.+- +. .+....+|.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 344555667788889999999999987777 77788888754 124455678899999862 22 233333332
Q ss_pred ----CCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEE
Q 000936 136 ----HYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211 (1219)
Q Consensus 136 ----~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 211 (1219)
....|.+-..+| +|++||.+|.||+||--..+.+. .+.+-..+|..+.
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKT---------------------------AlPgLG~~I~hVd 478 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKT---------------------------ALPGLGDAIKHVD 478 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhh---------------------------cccccCCceeeEE
Confidence 234555555444 89999999999999974433322 4566778899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEC
Q 000936 212 FHPTLPLIVSGADDRQVKLWRM 233 (1219)
Q Consensus 212 ~sp~g~~l~sg~~dg~I~iwd~ 233 (1219)
.+.+|++|+..+ +..+.+.+.
T Consensus 479 vtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 479 VTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeccCcEEEEec-ccEEEEEEE
Confidence 999999887665 455656554
No 427
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.07 E-value=0.26 Score=62.26 Aligned_cols=161 Identities=17% Similarity=0.113 Sum_probs=100.1
Q ss_pred HHHhccCHHHHHHhhhcC---cccch----hHHHHHHhCCChhhhhcccc-----Ccch---hhhH---HhhcCCHHHHH
Q 000936 603 LSLLRKRYDHVMSMIRNS---QLCGQ----AMIAYLQQKGFPEVALHFVK-----DERT---RFNL---ALESGNIQIAV 664 (1219)
Q Consensus 603 ~~l~~~~~~~a~~~i~~~---~~~~~----~i~~~l~~~g~~e~Al~~~~-----d~~~---rf~l---al~~g~~~~A~ 664 (1219)
.....|++++|...+... ..... .+...+...|..+.|+..++ +|.. .+.+ ....|+++.|+
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 345678888887665432 11111 12223455666666666553 2221 2222 34579999999
Q ss_pred HHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcch---------------hhHHHHhcCCHHHHHHHHHH
Q 000936 665 ASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFER---------------LSFLYLITGNMDKLSKMLKI 724 (1219)
Q Consensus 665 ~~a~~l-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~---------------l~~l~~~~g~~~~l~kl~~~ 724 (1219)
..++.. +++..|..+|.....+|+++.|..+|.++-..+. +..+|...|+++++.++.+.
T Consensus 454 ~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~k 533 (615)
T TIGR00990 454 ATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEK 533 (615)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 997753 5688999999999999999999999988644321 11233346888888877765
Q ss_pred HHHc-CCh----hHHHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCC
Q 000936 725 AEVK-NDV----MGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGL 769 (1219)
Q Consensus 725 ~~~~-~~~----~~~~~~al~lgd~~eai~i~~~~g~~~~A~~la~~~g~ 769 (1219)
+... .+. .....++...|++++|++.|.+ |..++++.+.
T Consensus 534 Al~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~------A~~l~~~~~e 577 (615)
T TIGR00990 534 ALIIDPECDIAVATMAQLLLQQGDVDEALKLFER------AAELARTEGE 577 (615)
T ss_pred HHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH------HHHHhccHHH
Confidence 4222 222 2334557788999999988765 4455554443
No 428
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.96 E-value=15 Score=46.56 Aligned_cols=100 Identities=11% Similarity=0.171 Sum_probs=62.2
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEe---cccCCCEEEEEEecCC------CEEEEEECCCeEEEEEcCCCeEEEEEc-
Q 000936 21 RPWILASLHSGVIQLWDYRMGTLIDRF---DEHDGPVRGVHFHKSQ------PLFVSGGDDYKIKVWNYKMHRCLFTLL- 90 (1219)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l---~~h~~~V~~l~fsp~~------~~Lasgs~Dg~I~vWd~~~~~~~~~l~- 90 (1219)
...++++..+|.+.-+..........+ ..-+..|.|+++.+++ ++++.++.|+++++..+....++..+.
T Consensus 549 r~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~ 628 (1205)
T KOG1898|consen 549 RRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSV 628 (1205)
T ss_pred ceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccc
Confidence 345666667777666655433223333 2345678999998765 479999999999999998766666553
Q ss_pred -cCCCCEEEEEEcC---CC------CEEEEEECCCeEEEE
Q 000936 91 -GHLDYIRTVQFHH---EY------PWIVSASDDQTIRIW 120 (1219)
Q Consensus 91 -~h~~~I~~l~fs~---d~------~~l~s~s~Dg~I~iw 120 (1219)
+-..++.++.+-+ ++ -+|.+|-.+|.+.-.
T Consensus 629 q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 629 QGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred cccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 3444555544432 22 156667667765444
No 429
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.93 E-value=5.7 Score=41.52 Aligned_cols=221 Identities=11% Similarity=0.123 Sum_probs=116.8
Q ss_pred CEEEEEECCCeEEEEECCCCeEEE-EecccCCCEEEEEEecCC---CEEEEEECCCeEEEEEcC--CCeEEEEEcc----
Q 000936 22 PWILASLHSGVIQLWDYRMGTLID-RFDEHDGPVRGVHFHKSQ---PLFVSGGDDYKIKVWNYK--MHRCLFTLLG---- 91 (1219)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~-~l~~h~~~V~~l~fsp~~---~~Lasgs~Dg~I~vWd~~--~~~~~~~l~~---- 91 (1219)
.++.+--..|.|.-||+.+.+..+ ++++ .++.++.+--.+ .+.+.++..-.|.-||.. .-....++..
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 344454566778778887654433 2222 124444443222 244444544445557732 2333333211
Q ss_pred -CCCCEEEEEEcCCCCEEEEEEC---------CCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEE-EEEECCCeEE
Q 000936 92 -HLDYIRTVQFHHEYPWIVSASD---------DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV-VSASLDQTVR 160 (1219)
Q Consensus 92 -h~~~I~~l~fs~d~~~l~s~s~---------Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~I~ 160 (1219)
.......-..+|+|++++-.-. .|.++.|-. +..+..+...-.--..++|+.+.+.+ ++-+.+-+|.
T Consensus 106 ~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred HHhcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 1234555667899987442222 234444432 22222222222334568888776544 4556677887
Q ss_pred EEE--CCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 000936 161 VWD--IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1219)
Q Consensus 161 vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~ 238 (1219)
-|| ..++..... ..++.+..... . .....-.++...+|++.++.-..++|...|..+++.
T Consensus 184 a~dyd~~tG~~snr---~~i~dlrk~~~--------------~-e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNR---KVIFDLRKSQP--------------F-ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI 245 (310)
T ss_pred eeecCCCcccccCc---ceeEEeccCCC--------------c-CCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE
Confidence 788 555433211 11111110000 0 011112345566889999999999999999999998
Q ss_pred eeEEeecCCCCCeEEEEEcc-CCCEEEEE
Q 000936 239 WEVDTLRGHMNNVSCVMFHA-KQDIIVSN 266 (1219)
Q Consensus 239 ~~~~~~~~h~~~I~~l~~sp-~g~~L~s~ 266 (1219)
+.++.-....|+|++|-- +-..+++.
T Consensus 246 --L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 246 --LLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred --EEEEEcCCCceEEEEecCCCccEEEEE
Confidence 566666688999999963 33344443
No 430
>PLN03077 Protein ECB2; Provisional
Probab=94.88 E-value=0.5 Score=62.26 Aligned_cols=127 Identities=10% Similarity=0.019 Sum_probs=71.2
Q ss_pred HhhcCCHHHHHHHHHHhCC--hhHHHHHHHHHHHcCChhHHHHHHHhhcC---------cchhhHHHHhcCCHHHHHHHH
Q 000936 654 ALESGNIQIAVASAKEIDE--KDHWYRLGVEALRQGNAGIVEYAYQRTKN---------FERLSFLYLITGNMDKLSKML 722 (1219)
Q Consensus 654 al~~g~~~~A~~~a~~l~~--~~~w~~La~~al~~g~~~~Ae~~y~~~~d---------~~~l~~l~~~~g~~~~l~kl~ 722 (1219)
..++|+++.|.+....+.. ...|..|...+.+.|+++.|...|.++.. +..+...+...|+.+++.++.
T Consensus 333 y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~ 412 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412 (857)
T ss_pred HHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHH
Confidence 3456666666666665433 33566666666666666666666665522 223333445566666666655
Q ss_pred HHHHHcCCh------hHHHHHHHhcCCHHHHHHHHHHcCCCh-----HHHHHHHhcCChHHHHHHHHHc
Q 000936 723 KIAEVKNDV------MGQFHNALYLGDVKERVKILESAGHLP-----LAYITASVHGLQDVAERLAAEL 780 (1219)
Q Consensus 723 ~~~~~~~~~------~~~~~~al~lgd~~eai~i~~~~g~~~-----~A~~la~~~g~~~~a~~l~~~~ 780 (1219)
+.....+-. ......+.+.|++++|.++|.+....+ .-+..+..+|..++|.++.++.
T Consensus 413 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 544444321 222334666677777777776654432 2233344566677777776654
No 431
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.86 E-value=8.3 Score=45.09 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=83.3
Q ss_pred CCEEEEEEeCCCCEEEEEE-----------CCC-eEEEEECCC--Ce--EEEEecccCCCEEEEEEecCCCEEEEEECCC
Q 000936 10 NRVKGLSFHSKRPWILASL-----------HSG-VIQLWDYRM--GT--LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY 73 (1219)
Q Consensus 10 ~~V~~i~fspdg~~Lasg~-----------~dg-~I~iWd~~~--g~--~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg 73 (1219)
.....|+|.++|+.+++-. ..+ .|.+++-.+ |+ ....+...-...+++++.+++ ++++ ...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~- 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP- 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC-
Confidence 4567899999999777642 223 787776443 33 234444444456899999999 5554 343
Q ss_pred eEEEE-EcCC-------CeEEEE-Ecc----CCCCEEEEEEcCCCCEEEEEEC-------------------CCeEEEEE
Q 000936 74 KIKVW-NYKM-------HRCLFT-LLG----HLDYIRTVQFHHEYPWIVSASD-------------------DQTIRIWN 121 (1219)
Q Consensus 74 ~I~vW-d~~~-------~~~~~~-l~~----h~~~I~~l~fs~d~~~l~s~s~-------------------Dg~I~iwd 121 (1219)
.|..| |... .+.+.+ +.. +......+.|.|||.+.++.+. .|.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 34434 4421 122222 322 1345778999999986554442 14566666
Q ss_pred CCCCeEEEEEecCCCCeEEEEEecCCCEEEEEE
Q 000936 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (1219)
Q Consensus 122 ~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s 154 (1219)
..+++......++ .....++|+|+|+++++-.
T Consensus 171 pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 6555543333333 4457899999998877644
No 432
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.81 E-value=7.9 Score=42.56 Aligned_cols=153 Identities=10% Similarity=-0.066 Sum_probs=89.9
Q ss_pred CEEEEEEecCCCEEEEEE---CCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEE-CCCCeEE
Q 000936 53 PVRGVHFHKSQPLFVSGG---DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN-WQSRTCI 128 (1219)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs---~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd-~~s~~~i 128 (1219)
.+.+.++++++..++... ....+.++... ....... ....+..-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999777665 33456666543 2222221 223778889999977555555566666663 2333222
Q ss_pred E-EEe-c-CCCCeEEEEEecCCCEEEEEE---CCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEee
Q 000936 129 S-VLT-G-HNHYVMCASFHPKEDLVVSAS---LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1219)
Q Consensus 129 ~-~~~-~-h~~~V~~l~~sp~~~~l~s~s---~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1219)
. ... . -...|..+.++|||..++... .++.|.+--+......... .-.........
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~------------------~l~~~~~~~~~ 163 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR------------------RLTGPRRVAPP 163 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc------------------eeccceEeccc
Confidence 1 111 1 112899999999998777665 3467777655332111000 00001112223
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCC
Q 000936 203 HDRGVNWAAFHPTLPLIVSGADDR 226 (1219)
Q Consensus 203 ~~~~V~~l~~sp~g~~l~sg~~dg 226 (1219)
....+..+.|.+++.+++.+...+
T Consensus 164 ~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 164 LLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ccCcceeeeecCCCEEEEEeCCCC
Confidence 456889999999998777766544
No 433
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.81 E-value=9.9 Score=43.69 Aligned_cols=249 Identities=18% Similarity=0.164 Sum_probs=118.8
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEEcCCCeE---EEEE----ccCCCCEEEEEEcCC---CCEEEEEECC---------
Q 000936 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC---LFTL----LGHLDYIRTVQFHHE---YPWIVSASDD--------- 114 (1219)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~---~~~l----~~h~~~I~~l~fs~d---~~~l~s~s~D--------- 114 (1219)
-++|+|.|+|++|++ ...|.|.+++ .++.. +..+ .........++++|+ +.+|......
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 478999999987665 5589999999 44543 3333 123457899999995 3344433321
Q ss_pred CeEEEEECCCC-------eEE-EEEe---cCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeecc
Q 000936 115 QTIRIWNWQSR-------TCI-SVLT---GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQ 183 (1219)
Q Consensus 115 g~I~iwd~~s~-------~~i-~~~~---~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 183 (1219)
..|.-|....+ +.+ ..+. ...+.-..+.|.|+|.+.++.+..+. ....+ ........++.+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~-----~~~~~-~~~~~~G~ilri~~ 155 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN-----DDNAQ-DPNSLRGKILRIDP 155 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT-----GGGGC-STTSSTTEEEEEET
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC-----ccccc-ccccccceEEEecc
Confidence 23444544333 111 1222 24566778999999977666664443 00000 00011112222221
Q ss_pred cccc-----ccccccceEEEEEeecCCCeEEEEEcCC-CCEEEEE-eCCCeEEEEECCCCCe------------------
Q 000936 184 MNTD-----LFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVSG-ADDRQVKLWRMNETKA------------------ 238 (1219)
Q Consensus 184 ~~~~-----~~~~~~~~~~~~~~~~~~~V~~l~~sp~-g~~l~sg-~~dg~I~iwd~~~~~~------------------ 238 (1219)
.+.. ..+.........-.++ +....++|+|. |.++++= +.++.=.|..+..+..
T Consensus 156 dG~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~ 234 (331)
T PF07995_consen 156 DGSIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG 234 (331)
T ss_dssp TSSB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred cCcCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence 1110 0000000011112223 34567899998 6555432 1222222221111110
Q ss_pred ---------eeEEeecCCCCCeEEEEEcc-------CCCEEEEEeCCCcEEEEeCCCCeeEEE---Ee-cCCCCEEEEEE
Q 000936 239 ---------WEVDTLRGHMNNVSCVMFHA-------KQDIIVSNSEDKSIRVWDVTKRTGVQT---FR-REHDRFWILAS 298 (1219)
Q Consensus 239 ---------~~~~~~~~h~~~I~~l~~sp-------~g~~L~s~s~dg~I~iwdl~~~~~~~~---~~-~~~~~i~~l~~ 298 (1219)
.++..+..| ..++.+.|.+ +|.++++.-..+.|....+..+..+.. +. ....++..+++
T Consensus 235 ~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 313 (331)
T PF07995_consen 235 DAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ 313 (331)
T ss_dssp TGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred cccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence 112233333 4566677753 345666666667788887765543222 22 23347899999
Q ss_pred eCCCCEEEEEeCCC
Q 000936 299 HPEMNLLAAGHDSG 312 (1219)
Q Consensus 299 sp~~~~la~g~d~g 312 (1219)
.|||.+.++...+|
T Consensus 314 ~pDG~Lyv~~d~~G 327 (331)
T PF07995_consen 314 GPDGALYVSDDSDG 327 (331)
T ss_dssp ETTSEEEEEE-TTT
T ss_pred cCCCeEEEEECCCC
Confidence 99998877765433
No 434
>PHA02713 hypothetical protein; Provisional
Probab=94.71 E-value=0.73 Score=56.98 Aligned_cols=189 Identities=6% Similarity=-0.007 Sum_probs=91.0
Q ss_pred CCCEEEEEECC------CeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECCC-----eEEEEEcCCCeEEE-
Q 000936 20 KRPWILASLHS------GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY-----KIKVWNYKMHRCLF- 87 (1219)
Q Consensus 20 dg~~Lasg~~d------g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg-----~I~vWd~~~~~~~~- 87 (1219)
++...++||.+ ..+..||..+++....-.-....-......-+|++.+.||.++ ++..||..+.+...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 45556666643 3467778776653221111111111112233677888888653 47889987664332
Q ss_pred -EEccCCCCEEEEEEcCCCCEEEEEECC-----------------------CeEEEEECCCCeEEEEEecCCCCe-EEEE
Q 000936 88 -TLLGHLDYIRTVQFHHEYPWIVSASDD-----------------------QTIRIWNWQSRTCISVLTGHNHYV-MCAS 142 (1219)
Q Consensus 88 -~l~~h~~~I~~l~fs~d~~~l~s~s~D-----------------------g~I~iwd~~s~~~i~~~~~h~~~V-~~l~ 142 (1219)
.+.........+ .-++...+.|+.+ ..+..||..+.+-...-.-..... .+++
T Consensus 383 ~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~ 460 (557)
T PHA02713 383 PDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV 460 (557)
T ss_pred CCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence 111111111112 2256666666654 247778877654322111111111 1122
Q ss_pred EecCCCEEEEEECCC------eEEEEECCC-CccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCC
Q 000936 143 FHPKEDLVVSASLDQ------TVRVWDIGA-LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (1219)
Q Consensus 143 ~sp~~~~l~s~s~dg------~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~ 215 (1219)
. -++...+.|+.++ .+..||..+ .+-.... .+.........+.+ +
T Consensus 461 ~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~-------------------------~m~~~r~~~~~~~~--~ 512 (557)
T PHA02713 461 S-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT-------------------------TTESRLSALHTILH--D 512 (557)
T ss_pred E-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc-------------------------ccCcccccceeEEE--C
Confidence 2 2456666666442 356677665 3322111 11111112222222 5
Q ss_pred CCEEEEEeCCC--eEEEEECCCCCe
Q 000936 216 LPLIVSGADDR--QVKLWRMNETKA 238 (1219)
Q Consensus 216 g~~l~sg~~dg--~I~iwd~~~~~~ 238 (1219)
+.+.++|+.+| .+-.||..+.+-
T Consensus 513 ~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 513 NTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CEEEEEeeecceeehhhcCcccccc
Confidence 67888998888 677788777664
No 435
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.62 E-value=0.093 Score=40.50 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=30.2
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeE
Q 000936 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL 43 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~ 43 (1219)
...|++++|+|..++||.|+.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 467999999999999999999999999998 5543
No 436
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.62 E-value=9.7 Score=42.74 Aligned_cols=269 Identities=10% Similarity=0.060 Sum_probs=127.0
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEec--cc---CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 000936 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD--EH---DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~--~h---~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~ 83 (1219)
...+..|.|..+..-.++| ..|.|. -..+.|+.-.... .. .-...+|.|..+ ..+++ +..+. .+-..+.|
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~-ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGL-LLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEEE-EESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTE-EEEESSTT
T ss_pred CCceEEEEEecCCEEEEEe-cCCEEE-EECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCce-EEEecCCC
Confidence 4578999999666666665 566542 2223332222111 11 223667888653 34444 44453 33333333
Q ss_pred eEEEEE---ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-EEEEecCCCCeEEEEEecCCCEEEEEECCCeE
Q 000936 84 RCLFTL---LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC-ISVLTGHNHYVMCASFHPKEDLVVSASLDQTV 159 (1219)
Q Consensus 84 ~~~~~l---~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~-i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I 159 (1219)
+.-..+ ..-.+....+....++. ...++..|.|..=. +.|+. ......-...+..+.-+++|.++++++.....
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~ 168 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFY 168 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEE
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEE
Confidence 322222 11223334444444443 33344455544322 23332 22234445678888889999988888766666
Q ss_pred EEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCCe
Q 000936 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR-MNETKA 238 (1219)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd-~~~~~~ 238 (1219)
.-||-.... ...........|..+.|.|++.+.+. ...|.|++=+ ......
T Consensus 169 ~s~~~G~~~---------------------------w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 169 SSWDPGQTT---------------------------WQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGET 220 (302)
T ss_dssp EEE-TT-SS----------------------------EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEEE
T ss_pred EEecCCCcc---------------------------ceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCccc
Confidence 778754311 11122234678999999999876554 4888888877 223332
Q ss_pred eeEEeec--CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEec---CCCCEEEEEEeCCCCEEEEEeCCCe
Q 000936 239 WEVDTLR--GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR---EHDRFWILASHPEMNLLAAGHDSGM 313 (1219)
Q Consensus 239 ~~~~~~~--~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~---~~~~i~~l~~sp~~~~la~g~d~gi 313 (1219)
|...... .....+..++|.+++...++|+. |.+ +.....|+.-+..+. -...++.+.|.++.+-++.|.++-+
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~l 298 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVL 298 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEE
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEE
Confidence 2221111 23334789999998887776654 433 334455555444332 2346888888887788888876544
Q ss_pred e
Q 000936 314 I 314 (1219)
Q Consensus 314 ~ 314 (1219)
.
T Consensus 299 l 299 (302)
T PF14870_consen 299 L 299 (302)
T ss_dssp E
T ss_pred E
Confidence 3
No 437
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.60 E-value=2.3 Score=52.58 Aligned_cols=190 Identities=12% Similarity=0.096 Sum_probs=100.1
Q ss_pred ecCCCEEEEEECC------CeEEEEEcCCCeEEEEEcc-CCCCEEEEEEcCCCCEEEEEECC------CeEEEEECCCCe
Q 000936 60 HKSQPLFVSGGDD------YKIKVWNYKMHRCLFTLLG-HLDYIRTVQFHHEYPWIVSASDD------QTIRIWNWQSRT 126 (1219)
Q Consensus 60 sp~~~~Lasgs~D------g~I~vWd~~~~~~~~~l~~-h~~~I~~l~fs~d~~~l~s~s~D------g~I~iwd~~s~~ 126 (1219)
+..+.+++.||.+ ..+..+|..++.......- +...-.++++. ++...++|+.| .++..||..+.+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3345577777766 4677888877643332211 22223344444 34677788887 357778877665
Q ss_pred EEE--EEecCCCCeEEEEEecCCCEEEEEECCCe-----EEEEECCCCccccccCCccceeeccccccccccccceEEEE
Q 000936 127 CIS--VLTGHNHYVMCASFHPKEDLVVSASLDQT-----VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV 199 (1219)
Q Consensus 127 ~i~--~~~~h~~~V~~l~~sp~~~~l~s~s~dg~-----I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1219)
-.. .+.......- ++. -+|...++|+.||. |-.||..+.+-....+.
T Consensus 361 W~~~a~M~~~R~~~~-v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m------------------------ 414 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFG-VAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM------------------------ 414 (571)
T ss_pred eeccCCccCccccce-eEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCC------------------------
Confidence 322 1111111111 111 25778888888864 66677766443322111
Q ss_pred EeecCCCeEEEEEcCCCCEEEEEeCCC------eEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCc--
Q 000936 200 LEGHDRGVNWAAFHPTLPLIVSGADDR------QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS-- 271 (1219)
Q Consensus 200 ~~~~~~~V~~l~~sp~g~~l~sg~~dg------~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~-- 271 (1219)
....... ..-.-+|.+.++|+.++ .+..||..+.+...+..+...........+ ++.+.+.|+.|+.
T Consensus 415 -~~~r~~~--gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~ 489 (571)
T KOG4441|consen 415 -LTRRSGH--GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSA 489 (571)
T ss_pred -Ccceeee--EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCc
Confidence 0001111 11122567777877554 577888888765333333322222222222 6778888887763
Q ss_pred ---EEEEeCCCCe
Q 000936 272 ---IRVWDVTKRT 281 (1219)
Q Consensus 272 ---I~iwdl~~~~ 281 (1219)
|..||..+.+
T Consensus 490 ~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 490 LSSVERYDPETNQ 502 (571)
T ss_pred cceEEEEcCCCCc
Confidence 5666665543
No 438
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.41 E-value=0.11 Score=53.86 Aligned_cols=104 Identities=16% Similarity=0.235 Sum_probs=70.2
Q ss_pred CCEEEEEECCCeEEEEECCC-CeEEEEecccCCCEEEE-EEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCC-CCEE
Q 000936 21 RPWILASLHSGVIQLWDYRM-GTLIDRFDEHDGPVRGV-HFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL-DYIR 97 (1219)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~-g~~i~~l~~h~~~V~~l-~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~-~~I~ 97 (1219)
+..+++|+.+|.|.+|+... |.....+..-..+|.++ .-..++.+..+++.||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 45688899999999999762 22222222223333332 223355588899999999999999888888877787 5666
Q ss_pred EEEEcCCCCEEEEE--ECCCeEEEEECCC
Q 000936 98 TVQFHHEYPWIVSA--SDDQTIRIWNWQS 124 (1219)
Q Consensus 98 ~l~fs~d~~~l~s~--s~Dg~I~iwd~~s 124 (1219)
....+..+..++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66666666666666 6677777777653
No 439
>PLN03077 Protein ECB2; Provisional
Probab=94.39 E-value=0.6 Score=61.57 Aligned_cols=129 Identities=10% Similarity=-0.035 Sum_probs=68.4
Q ss_pred HHhhcCCHHHHHHHHHHhCCh--hHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhhHHHHhcCCHHHHHHHH
Q 000936 653 LALESGNIQIAVASAKEIDEK--DHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKML 722 (1219)
Q Consensus 653 lal~~g~~~~A~~~a~~l~~~--~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~~l~kl~ 722 (1219)
+..++|+++.|.+..+++.++ ..|..+...+.+.|++++|...|.++.. |..+...+...|+.+..+.+-
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 344455555555555554332 2455555555555555555555555531 111222233345555544443
Q ss_pred HHHHHcCC------hhHHHHHHHhcCCHHHHHHHHHHcCC----ChHHHHHHHhcCChHHHHHHHHHcC
Q 000936 723 KIAEVKND------VMGQFHNALYLGDVKERVKILESAGH----LPLAYITASVHGLQDVAERLAAELG 781 (1219)
Q Consensus 723 ~~~~~~~~------~~~~~~~al~lgd~~eai~i~~~~g~----~~~A~~la~~~g~~~~a~~l~~~~~ 781 (1219)
......+- .......+.+.|++++|.++|.+... |..-+..+-.+|..++|.++.++.-
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33322221 12233456667777777777766521 2233445668899999999987643
No 440
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=94.28 E-value=12 Score=42.37 Aligned_cols=239 Identities=9% Similarity=0.085 Sum_probs=118.6
Q ss_pred CCCEEEEEECCCeEEEEECCC--CeEEEEecccCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCCeE-----------
Q 000936 20 KRPWILASLHSGVIQLWDYRM--GTLIDRFDEHDGPVRGVHFHKSQPLFVSGG-DDYKIKVWNYKMHRC----------- 85 (1219)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~--g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs-~Dg~I~vWd~~~~~~----------- 85 (1219)
++++|+.|+.+| |.+-+... ++..+.+ +..+|+++...+..+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 346999999999 55555554 3344443 567899999999888766655 344599999732111
Q ss_pred ----EEEEccCCCCEEEEEEcCCC-CEEEEEECCCeEEEEECCCC--e--EEEEE---e-cCCCCeEEEEEecC--CCEE
Q 000936 86 ----LFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSR--T--CISVL---T-GHNHYVMCASFHPK--EDLV 150 (1219)
Q Consensus 86 ----~~~l~~h~~~I~~l~fs~d~-~~l~s~s~Dg~I~iwd~~s~--~--~i~~~---~-~h~~~V~~l~~sp~--~~~l 150 (1219)
.....+|............. ..++++....+|.++.|... + ....+ . .-..++..+..+++ ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 11122344433333333221 23445555677888765432 1 11110 0 11123333333333 4567
Q ss_pred EEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecC-CCeEEEEEcCCCCEEEEEeCCCeEE
Q 000936 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPLIVSGADDRQVK 229 (1219)
Q Consensus 151 ~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~V~~l~~sp~g~~l~sg~~dg~I~ 229 (1219)
..|+..+...++++... ...+. |....+...... .++. +..-+++.++++ .+ ....
T Consensus 169 cvG~~~~~~~~~~~~~~---~~~~~-----------------d~sl~~~~~~~~~~p~~-i~~l~~~e~Llc-~~-~~~v 225 (302)
T smart00036 169 CIGSDKGGGDVVQFHES---LVSKE-----------------DLSLPFLSEETSLKPIS-VVQVPRDEFLLC-YD-EFGV 225 (302)
T ss_pred EEEEcCCCCeEEEEeec---ccccc-----------------cccccccccccccCceE-EEEECCCeEEEE-EC-cEEE
Confidence 77776433445554320 00000 000000111111 2333 333334444443 33 3344
Q ss_pred EEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEEec
Q 000936 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR 288 (1219)
Q Consensus 230 iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~~~ 288 (1219)
+-|..+........+. -...+.++++. ..+|+.-+.+ .|.++++.+++.++++..
T Consensus 226 ~Vn~~G~~~~r~~~l~-w~~~p~~~~~~--~pyll~~~~~-~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 226 FVNLYGKRRSRNPILH-WEFMPESFAYH--SPYLLAFHDN-GIEIRSIKTGELLQELAD 280 (302)
T ss_pred EEeCCCCccccceEEE-cCCcccEEEEE--CCEEEEEcCC-cEEEEECCCCceEEEEec
Confidence 5555541111122222 23445677776 4666666554 599999999998888864
No 441
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.27 E-value=9.8 Score=41.36 Aligned_cols=198 Identities=8% Similarity=0.042 Sum_probs=113.4
Q ss_pred eEEEEecccCC--CEEEEEEecCCCEEEEEECCC--eEEEEEcCCCeEEEEEccC-CCCEEEEEEcCCCCEEEEEECCCe
Q 000936 42 TLIDRFDEHDG--PVRGVHFHKSQPLFVSGGDDY--KIKVWNYKMHRCLFTLLGH-LDYIRTVQFHHEYPWIVSASDDQT 116 (1219)
Q Consensus 42 ~~i~~l~~h~~--~V~~l~fsp~~~~Lasgs~Dg--~I~vWd~~~~~~~~~l~~h-~~~I~~l~fs~d~~~l~s~s~Dg~ 116 (1219)
+.+.++. |+. -..++.|..++.++-+.|.-| .|+.+|+.+++......-. .-.-..++...+. ...-.=.++.
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~-l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDK-LYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTE-EEEEESSSSE
T ss_pred EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCE-EEEEEecCCe
Confidence 3455553 433 356888888888888887655 8999999999877654322 2233445555432 3333345789
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceE
Q 000936 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (1219)
Q Consensus 117 I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1219)
..+||..+-+.+.++.-. +.=..++ .+++.|+.......++++|..+.+.....
T Consensus 112 ~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i----------------------- 165 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI----------------------- 165 (264)
T ss_dssp EEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE-----------------------
T ss_pred EEEEccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEE-----------------------
Confidence 999999999998888643 3445555 46777777777788999998775543211
Q ss_pred EEEEee-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeec----------C---CCCCeEEEEEccCCCE
Q 000936 197 KYVLEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR----------G---HMNNVSCVMFHAKQDI 262 (1219)
Q Consensus 197 ~~~~~~-~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~----------~---h~~~I~~l~~sp~g~~ 262 (1219)
.....+ .-..++-+.|. +|...+-.-....|...|..++.......+. . ..+-...+++.|..+.
T Consensus 166 ~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 166 QVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp E-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred EEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 000000 11234445554 4555555555666777777777753222221 0 1345789999987776
Q ss_pred EEEEeC
Q 000936 263 IVSNSE 268 (1219)
Q Consensus 263 L~s~s~ 268 (1219)
|...+.
T Consensus 245 l~vTGK 250 (264)
T PF05096_consen 245 LFVTGK 250 (264)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 665553
No 442
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.12 E-value=11 Score=47.54 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=52.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----------CCe-eeEEee--------cCCCCCeEEEEEccC---CCE
Q 000936 205 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNE----------TKA-WEVDTL--------RGHMNNVSCVMFHAK---QDI 262 (1219)
Q Consensus 205 ~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~----------~~~-~~~~~~--------~~h~~~I~~l~~sp~---g~~ 262 (1219)
-.|..+..+|+|.+++..|..|...+ .+.. ++. ....+. ..+...|..+.|||. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 46888999999999999888665443 3321 111 011111 234457889999996 589
Q ss_pred EEEEeCCCcEEEEeCCCC
Q 000936 263 IVSNSEDKSIRVWDVTKR 280 (1219)
Q Consensus 263 L~s~s~dg~I~iwdl~~~ 280 (1219)
|++-+.|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999754
No 443
>PHA03098 kelch-like protein; Provisional
Probab=94.05 E-value=2.4 Score=52.58 Aligned_cols=147 Identities=10% Similarity=0.026 Sum_probs=69.1
Q ss_pred CCCEEEEEECCC------eEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECC-----CeEEEEEcCCCeEEEE
Q 000936 20 KRPWILASLHSG------VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD-----YKIKVWNYKMHRCLFT 88 (1219)
Q Consensus 20 dg~~Lasg~~dg------~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D-----g~I~vWd~~~~~~~~~ 88 (1219)
++..++.|+.++ .+..||..+++....-.-.......-...-++.+++.||.+ ..+..||..+++....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 345566666432 57788877766533211111111111122367778888765 3577788776543321
Q ss_pred Ecc-CCCCEEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEEEEEecC-CCCeEEEEEecCCCEEEEEECCC---
Q 000936 89 LLG-HLDYIRTVQFHHEYPWIVSASDD------QTIRIWNWQSRTCISVLTGH-NHYVMCASFHPKEDLVVSASLDQ--- 157 (1219)
Q Consensus 89 l~~-h~~~I~~l~fs~d~~~l~s~s~D------g~I~iwd~~s~~~i~~~~~h-~~~V~~l~~sp~~~~l~s~s~dg--- 157 (1219)
-.- +...-.+++ .-++...+.|+.+ ..+..||..+++-...-... ...-.++.. .++...+.|+.++
T Consensus 374 ~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 451 (534)
T PHA03098 374 PPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGISYIDN 451 (534)
T ss_pred CCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCccCCCC
Confidence 110 111111222 2345566666532 45788898765432211100 001112222 2455666665431
Q ss_pred -----eEEEEECCCCc
Q 000936 158 -----TVRVWDIGALR 168 (1219)
Q Consensus 158 -----~I~vwd~~~~~ 168 (1219)
.+.+||..+.+
T Consensus 452 ~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 452 IKVYNIVESYNPVTNK 467 (534)
T ss_pred CcccceEEEecCCCCc
Confidence 37777776643
No 444
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=94.00 E-value=1.2 Score=58.69 Aligned_cols=125 Identities=16% Similarity=0.043 Sum_probs=67.2
Q ss_pred hhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhhHHHHhcCCHHHHHHH
Q 000936 655 LESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSKM 721 (1219)
Q Consensus 655 l~~g~~~~A~~~a~~l-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~~l~kl 721 (1219)
...|+++.|.+..+.. +++..|..+|......|+++.|..+|.++-.. ..+..++...|+.+.+.++
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456666666665432 33556666666666666666666666654221 2344555566666666655
Q ss_pred HHHHHHcCCh-----hHHHHHHHhcCCHHHHHHHHHHcCCC----h---HHHHHHHhcCChHHHHHHHHH
Q 000936 722 LKIAEVKNDV-----MGQFHNALYLGDVKERVKILESAGHL----P---LAYITASVHGLQDVAERLAAE 779 (1219)
Q Consensus 722 ~~~~~~~~~~-----~~~~~~al~lgd~~eai~i~~~~g~~----~---~A~~la~~~g~~~~a~~l~~~ 779 (1219)
.+........ .....++...|++++|++.|.+.-.. . ....+....|.+++|.+..++
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 692 AKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5544332211 12233456677788777777763211 1 112233445666666666654
No 445
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.99 E-value=0.12 Score=39.81 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=30.9
Q ss_pred cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE
Q 000936 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL 86 (1219)
Q Consensus 50 h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~ 86 (1219)
....|.+++|+|...++|.++.+|.|.++.+ +++.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 3457999999999999999999999999998 45443
No 446
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.81 E-value=0.011 Score=71.00 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=77.2
Q ss_pred cccCCCEEEEEEeC-CCCEEEEEECCCeEEEEECC--CCeEEEEe-----cccCCCEEEEEEec---CCCEEEEEECCCe
Q 000936 6 ETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYR--MGTLIDRF-----DEHDGPVRGVHFHK---SQPLFVSGGDDYK 74 (1219)
Q Consensus 6 ~~h~~~V~~i~fsp-dg~~Lasg~~dg~I~iWd~~--~g~~i~~l-----~~h~~~V~~l~fsp---~~~~Lasgs~Dg~ 74 (1219)
+|-++.|-.+.|-. +.+.++ -.-|.+.||++. .|+....+ ..-...+.-+.|.| +.-++..+-+++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 45566777777733 333333 234678899875 45443333 22334456677765 5567777778888
Q ss_pred EEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEE
Q 000936 75 IKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (1219)
Q Consensus 75 I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s 154 (1219)
|++.++++... ..+.+|...+..++|...|-..+.+ .+|||..++.++
T Consensus 207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a~a~ 254 (1283)
T KOG1916|consen 207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFAWAI 254 (1283)
T ss_pred eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEEEee
Confidence 88877654322 3445688888887776655222111 667888888888
Q ss_pred CCCeEEEEEC
Q 000936 155 LDQTVRVWDI 164 (1219)
Q Consensus 155 ~dg~I~vwd~ 164 (1219)
.||.++.|.+
T Consensus 255 ~dG~v~f~Qi 264 (1283)
T KOG1916|consen 255 SDGSVGFYQI 264 (1283)
T ss_pred cCCccceeee
Confidence 8888887765
No 447
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.74 E-value=0.49 Score=49.35 Aligned_cols=162 Identities=17% Similarity=0.126 Sum_probs=101.7
Q ss_pred HhccCHHHHHH-------hhhcCcccchhHHHHHHhCCChhhhhccccC-----cch-----hhh-HHhhcCCHHHHHHH
Q 000936 605 LLRKRYDHVMS-------MIRNSQLCGQAMIAYLQQKGFPEVALHFVKD-----ERT-----RFN-LALESGNIQIAVAS 666 (1219)
Q Consensus 605 l~~~~~~~a~~-------~i~~~~~~~~~i~~~l~~~g~~e~Al~~~~d-----~~~-----rf~-lal~~g~~~~A~~~ 666 (1219)
|..|++..|.. .-++.......+.-|.++.|..+.|.+.++. |+. .|. .....|.+++|+..
T Consensus 46 L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~ 125 (250)
T COG3063 46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQ 125 (250)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHH
Confidence 34556555544 3344333333445577888888887765542 211 222 23556888888887
Q ss_pred HHH-hCC------hhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 000936 667 AKE-IDE------KDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNAL 739 (1219)
Q Consensus 667 a~~-l~~------~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~~~~~~~~~~~~~~al 739 (1219)
... +.+ ...|+.++--++++|+.+.|++.|+++=. ....+...+.+|++....++++..+-..+.
T Consensus 126 F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--------~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 126 FERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--------LDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--------hCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 654 343 45799999999999999999999998733 334455666777776666666654433221
Q ss_pred hc-CCH-HHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcC
Q 000936 740 YL-GDV-KERVKILESAGHLPLAYITASVHGLQDVAERLAAELG 781 (1219)
Q Consensus 740 ~l-gd~-~eai~i~~~~g~~~~A~~la~~~g~~~~a~~l~~~~~ 781 (1219)
.. +.. -.|.. +-+++++|+..|+-+.+.+.-.++.
T Consensus 198 ~~~~~~~~~A~s-------L~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGGAQAES-------LLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhcccccHHH-------HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11 110 22222 3478899999999998888776653
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.64 E-value=0.019 Score=65.00 Aligned_cols=242 Identities=11% Similarity=0.125 Sum_probs=142.9
Q ss_pred EEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEE-EEECCCeEEEEEcCCCeEEEEEc
Q 000936 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFV-SGGDDYKIKVWNYKMHRCLFTLL 90 (1219)
Q Consensus 12 V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~La-sgs~Dg~I~vWd~~~~~~~~~l~ 90 (1219)
-....|-|.+.-+++++.+..+..|| +.|+.+.... .++....++|..+++.++ .+-..+.+.+||+.+......-.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 34556788777799999999999999 5666555553 455567889988887554 45567899999987543221111
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEEECCCeE----------E
Q 000936 91 GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTV----------R 160 (1219)
Q Consensus 91 ~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I----------~ 160 (1219)
+-...-.-+.|++..+.++.+...|.+.|++..+.+.+.....|...+++++|.+.+ +.+.++.|..+ +
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~qegeta~ 193 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTTQEGETAS 193 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHHhhhccceee
Confidence 122222337899999999999999999999988877776666699999999999876 45555555443 3
Q ss_pred EEECCCCccccc---------cCCccce-eecccccc-c---cccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCC
Q 000936 161 VWDIGALRKKTV---------SPADDIL-RLSQMNTD-L---FGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR 226 (1219)
Q Consensus 161 vwd~~~~~~~~~---------~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg 226 (1219)
++...+.-.... ......+ .+...... . ....|...-..+....+.+.|+.|--||. |..+.+-|
T Consensus 194 ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~-i~igf~ag 272 (615)
T KOG2247|consen 194 LTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGY-ILIGFDAG 272 (615)
T ss_pred eeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccceEeeecCCceeEEEEecccc-ccccccce
Confidence 343322110000 0000000 00000000 0 01122223335555667788888888874 55566666
Q ss_pred eEEEEECCCCCeee-EEeecCCCCCeEEEEEc
Q 000936 227 QVKLWRMNETKAWE-VDTLRGHMNNVSCVMFH 257 (1219)
Q Consensus 227 ~I~iwd~~~~~~~~-~~~~~~h~~~I~~l~~s 257 (1219)
.|..-.+.+.+... ......|.+.+.+++.|
T Consensus 273 ~iV~iS~h~aeLgaeffqkldy~~aLqsiavs 304 (615)
T KOG2247|consen 273 YIVSISAHNAELGAEFFQKLDYRGALQSIAVS 304 (615)
T ss_pred eEEEEeccchHHHHHHHHHhhHHhhhHHHHHH
Confidence 66666665554310 11112455555555544
No 449
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=93.58 E-value=1.5 Score=59.79 Aligned_cols=127 Identities=17% Similarity=0.058 Sum_probs=93.9
Q ss_pred HhhcCCHHHHHHHHHHh-CChhHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhhHHHHhcCCHHHHHHHHHH
Q 000936 654 ALESGNIQIAVASAKEI-DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKI 724 (1219)
Q Consensus 654 al~~g~~~~A~~~a~~l-~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~~l~kl~~~ 724 (1219)
..+.|++++|.++++.. .++..+..||..+++.|+++.|..+|+++-. ...+..+|...|+.+++.++.+.
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45678899998888753 4566889999999999999999999987743 23466778889999999888775
Q ss_pred HHHcC-C-h---hHHHHHHHhcCCHHHHHHHHHHcCCC-----h---HH------HHHHHhcCChHHHHHHHHHc
Q 000936 725 AEVKN-D-V---MGQFHNALYLGDVKERVKILESAGHL-----P---LA------YITASVHGLQDVAERLAAEL 780 (1219)
Q Consensus 725 ~~~~~-~-~---~~~~~~al~lgd~~eai~i~~~~g~~-----~---~A------~~la~~~g~~~~a~~l~~~~ 780 (1219)
..... + . .....++...|++++|+++|.+.-.. + .| -.+++..|.+++|.++.++.
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54332 2 1 12234567889999999999985332 1 12 34578889999999997664
No 450
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.52 E-value=1 Score=50.79 Aligned_cols=84 Identities=11% Similarity=0.050 Sum_probs=40.1
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhhHHHHhcCCHHHHHHHHHHHHHcCCh-----hHHHHH
Q 000936 671 DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSKMLKIAEVKNDV-----MGQFHN 737 (1219)
Q Consensus 671 ~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~~l~kl~~~~~~~~~~-----~~~~~~ 737 (1219)
++|....+||+.+-+.|+-..|-.||-..=.| +-|..-|+.+.-++|.-.-.+.+..-... ++.+.+
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASC 669 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 34556666666666666666666665543221 22333344444444433322222111111 233344
Q ss_pred HHhcCCHHHHHHHHHHc
Q 000936 738 ALYLGDVKERVKILESA 754 (1219)
Q Consensus 738 al~lgd~~eai~i~~~~ 754 (1219)
+...|++..|..+|++.
T Consensus 670 ~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HHhcccHHHHHHHHHHH
Confidence 55556666666666663
No 451
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=93.50 E-value=0.29 Score=54.94 Aligned_cols=105 Identities=21% Similarity=0.232 Sum_probs=73.6
Q ss_pred hhHHhhcCCHHHHHHHHHH-------hCChhHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhhHHHHhcCCH
Q 000936 651 FNLALESGNIQIAVASAKE-------IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNM 715 (1219)
Q Consensus 651 f~lal~~g~~~~A~~~a~~-------l~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~ 715 (1219)
..++...++++.+.+..+. -+++..|..+|..+.+.|+.+.|+.+|+++=. ...+..+++..|+.
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY 196 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh
Confidence 3456678899888887665 24678999999999999999999999988721 22345566778999
Q ss_pred HHHHHHHHHHHHc----CCh-hHHHHHHHhcCCHHHHHHHHHHcC
Q 000936 716 DKLSKMLKIAEVK----NDV-MGQFHNALYLGDVKERVKILESAG 755 (1219)
Q Consensus 716 ~~l~kl~~~~~~~----~~~-~~~~~~al~lgd~~eai~i~~~~g 755 (1219)
++++.+.+..... ... ...+..+..+|+.++|...|.+.-
T Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 197 DEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 9877766554333 222 334455888899999999998843
No 452
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.41 E-value=1.6 Score=55.44 Aligned_cols=127 Identities=9% Similarity=-0.017 Sum_probs=88.5
Q ss_pred HhhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhhHHHHhcCCHHHHHH
Q 000936 654 ALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSK 720 (1219)
Q Consensus 654 al~~g~~~~A~~~a~~l-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~~l~k 720 (1219)
.+..|+++.|.+.++.. +++..|..+|..+...|+++.|..+|.++-. +..+..+|...|+.+++..
T Consensus 86 ~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 86 PLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred HhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHH
Confidence 35689999999988764 5678899999999999999999999988733 2345667888999998777
Q ss_pred HHHHH-HHcCChhHHH---HHHHhcCCHHHHHHHHHHcCCC------h---HHHHHHHhcCChHHHHHHHHHc
Q 000936 721 MLKIA-EVKNDVMGQF---HNALYLGDVKERVKILESAGHL------P---LAYITASVHGLQDVAERLAAEL 780 (1219)
Q Consensus 721 l~~~~-~~~~~~~~~~---~~al~lgd~~eai~i~~~~g~~------~---~A~~la~~~g~~~~a~~l~~~~ 780 (1219)
..+.. ....+...+. ..++..|++++|+..|...-.. . .+..+....|..++|.+..+..
T Consensus 166 ~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 166 LARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 65533 2332222211 2356679999999998773221 1 1223445678888888887764
No 453
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.34 E-value=2.1 Score=52.49 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=76.2
Q ss_pred CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEc-cCCCCEEEEEEc--CCCCEEEEEECCCeEEEEECC----
Q 000936 51 DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL-GHLDYIRTVQFH--HEYPWIVSASDDQTIRIWNWQ---- 123 (1219)
Q Consensus 51 ~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~-~h~~~I~~l~fs--~d~~~l~s~s~Dg~I~iwd~~---- 123 (1219)
-...+-+.-|.-++.-++-++..++.|||.+.+...+.-. ...+.|.++.|. |+++.+++.+....|.++.-.
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3344555555656555555556789999998877544332 457789999986 678889999999999998531
Q ss_pred -----CCeEEEEE--ecCC-CCeEEEEEecCCCEEEEEECCCeEEEEEC
Q 000936 124 -----SRTCISVL--TGHN-HYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (1219)
Q Consensus 124 -----s~~~i~~~--~~h~-~~V~~l~~sp~~~~l~s~s~dg~I~vwd~ 164 (1219)
+...+..+ ..|+ ++|.+..|.++|.+++.+ ++.+.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 11233332 3444 789999999998655544 467888874
No 454
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.22 E-value=1 Score=51.03 Aligned_cols=140 Identities=10% Similarity=0.100 Sum_probs=89.9
Q ss_pred CeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCCceeE
Q 000936 368 PRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVK 447 (1219)
Q Consensus 368 i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~ 447 (1219)
-+.+-|...++.++.+.. |.+.=|...+.........-....|.|.++.||+|++.++.-..+.+|.+++..+...+
T Consensus 25 sngvFfDDaNkqlfavrS---ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRS---GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred ccceeeccCcceEEEEec---CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence 344666665555554444 44555555544322222223345678999999999999999999999999999643322
Q ss_pred ee-----eCCc-ceEEEEEeCCCcEEEEeCCeEEEEEcCCCe-EEEEEec--CCeeEEEEcCCCCEEEEEeC
Q 000936 448 KS-----ILPI-AADAIFYAGTGNLLCRAEDRVVIFDLQQRL-VLGDLQT--PFVKYVVWSNDMESVALLSK 510 (1219)
Q Consensus 448 ~i-----~~~~-~v~~l~~s~dg~~L~s~d~~I~l~dl~~~~-~l~~~~~--~~v~~v~ws~dg~~la~~s~ 510 (1219)
.. +... .|...+|+.+..+.+.++..+.+|-+...+ .++..+. .+|+...|.++-..+...+.
T Consensus 102 l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 102 LEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 21 2222 688999999977777788888888764422 2222222 46788888888776554444
No 455
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=93.14 E-value=2.9 Score=49.57 Aligned_cols=181 Identities=13% Similarity=0.115 Sum_probs=106.3
Q ss_pred HHHHHhccCHHHHHHhhhcCcccc-hhHH-----HH-HHhCCChhhhhcccc-------Ccc-----hhhhHHhhcCCHH
Q 000936 601 FKLSLLRKRYDHVMSMIRNSQLCG-QAMI-----AY-LQQKGFPEVALHFVK-------DER-----TRFNLALESGNIQ 661 (1219)
Q Consensus 601 f~~~l~~~~~~~a~~~i~~~~~~~-~~i~-----~~-l~~~g~~e~Al~~~~-------d~~-----~rf~lal~~g~~~ 661 (1219)
-..++..||++.|.+.+......+ ...+ +. ..+.|.++.|.+.+. +.. +..++++..|+++
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHH
Confidence 345677899999988887543211 1122 22 267777777765553 221 2366888999999
Q ss_pred HHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchh-----h----HHH-------HhcCCHHHHHH
Q 000936 662 IAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERL-----S----FLY-------LITGNMDKLSK 720 (1219)
Q Consensus 662 ~A~~~a~~l-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l-----~----~l~-------~~~g~~~~l~k 720 (1219)
.|.+.++.. +++.....+++.++.+|+|+.|...+.+......+ . ..| ....+.+.+.+
T Consensus 171 ~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 171 AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999998763 55888999999999999999999877776543221 1 111 11222333333
Q ss_pred HHHHH--HHcCChh---HHHHHHHhcCCHHHHHHHHHHcC--CCh--HHHHHHH-hcCChHHHHHHHHHcC
Q 000936 721 MLKIA--EVKNDVM---GQFHNALYLGDVKERVKILESAG--HLP--LAYITAS-VHGLQDVAERLAAELG 781 (1219)
Q Consensus 721 l~~~~--~~~~~~~---~~~~~al~lgd~~eai~i~~~~g--~~~--~A~~la~-~~g~~~~a~~l~~~~~ 781 (1219)
+.+.. ..+++.. ..+..+...|+.++|.+++.+.= .++ ++...++ ..+..+++.+.++++-
T Consensus 251 ~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 251 WWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHH
Confidence 32211 2223332 22334677788888888876631 222 2222222 2255666777666543
No 456
>PRK12370 invasion protein regulator; Provisional
Probab=92.98 E-value=1.1 Score=55.49 Aligned_cols=124 Identities=10% Similarity=0.161 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhc--------CcchhhHHHHhcCCHHHHHHHHHH
Q 000936 658 GNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTK--------NFERLSFLYLITGNMDKLSKMLKI 724 (1219)
Q Consensus 658 g~~~~A~~~a~~-----l~~~~~w~~La~~al~~g~~~~Ae~~y~~~~--------d~~~l~~l~~~~g~~~~l~kl~~~ 724 (1219)
++++.|...+++ -+++..|..+|..+..+|+++.|+.+|.++- -+..+..+|...|+.+++....+.
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 456777776654 2457788888888888888888888887752 123345567778888877766655
Q ss_pred HHHcCChh-----HHHHHHHhcCCHHHHHHHHHHcC-----CChH-HHHHH---HhcCChHHHHHHHHHcC
Q 000936 725 AEVKNDVM-----GQFHNALYLGDVKERVKILESAG-----HLPL-AYITA---SVHGLQDVAERLAAELG 781 (1219)
Q Consensus 725 ~~~~~~~~-----~~~~~al~lgd~~eai~i~~~~g-----~~~~-A~~la---~~~g~~~~a~~l~~~~~ 781 (1219)
+...+... .....+...|++++|+..+.+.- ..+. ...++ ...|..++|.+.++...
T Consensus 398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 43332221 11223555788888888876641 1122 12223 34588888888877643
No 457
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=92.86 E-value=2 Score=45.86 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=88.0
Q ss_pred HhhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcc--------hhhHHHHhcCCHHHHHH
Q 000936 654 ALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFE--------RLSFLYLITGNMDKLSK 720 (1219)
Q Consensus 654 al~~g~~~~A~~~a~~l-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~--------~l~~l~~~~g~~~~l~k 720 (1219)
....|+++.|.+.++.. ++...|..+|..+..+|+++.|...|.++-... .+..+|...|+++++.+
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 120 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ 120 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 34567777777776542 346789999999999999999999998774322 34566778999999887
Q ss_pred HHHHHHHcCC-------hhHHHHHHHhcCCHHHHHHHHHHcCCC-----hHHH---HHHHhcCChHHHHHHHHHc
Q 000936 721 MLKIAEVKND-------VMGQFHNALYLGDVKERVKILESAGHL-----PLAY---ITASVHGLQDVAERLAAEL 780 (1219)
Q Consensus 721 l~~~~~~~~~-------~~~~~~~al~lgd~~eai~i~~~~g~~-----~~A~---~la~~~g~~~~a~~l~~~~ 780 (1219)
..+.+..... ......++...|++++|++.|.++-.. ...+ .++...|.+++|.+..++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 121 QFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERY 195 (234)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776543221 122344577889999999999774221 1111 3445568888888887764
No 458
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.78 E-value=0.81 Score=57.53 Aligned_cols=145 Identities=12% Similarity=0.041 Sum_probs=90.8
Q ss_pred CEEEEEEcCCCCEEE--EEECCCeEEEEECCCCeEEE-----------EEecCCCCeEEEEEecCC-CEEEEEECCCeEE
Q 000936 95 YIRTVQFHHEYPWIV--SASDDQTIRIWNWQSRTCIS-----------VLTGHNHYVMCASFHPKE-DLVVSASLDQTVR 160 (1219)
Q Consensus 95 ~I~~l~fs~d~~~l~--s~s~Dg~I~iwd~~s~~~i~-----------~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~ 160 (1219)
.|..+..++|+...+ ..+.+-.|..+|+.+-..-. +.........++.|+|.- ...+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455566666766433 33444478889986432111 111223456788898864 3566677789998
Q ss_pred EEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 000936 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (1219)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~ 240 (1219)
|..+....... .-.......++++|+|.|+.++.|-..|++.-|.........
T Consensus 182 V~~~~~~~~~v---------------------------~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ 234 (1405)
T KOG3630|consen 182 VKSTKQLAQNV---------------------------TSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE 234 (1405)
T ss_pred hhhhhhhhhhh---------------------------cccCcccceeeEEeccccceeeEecCCCeEEEeecccceeec
Confidence 88775432211 001234567899999999999999999999999766543211
Q ss_pred EEeecCC-CCCeEEEEEccCCCEEEEE
Q 000936 241 VDTLRGH-MNNVSCVMFHAKQDIIVSN 266 (1219)
Q Consensus 241 ~~~~~~h-~~~I~~l~~sp~g~~L~s~ 266 (1219)
+...... ...|.+++|-....++++-
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEEe
Confidence 2221111 4679999998777776653
No 459
>PHA03098 kelch-like protein; Provisional
Probab=92.75 E-value=3.5 Score=51.12 Aligned_cols=106 Identities=10% Similarity=0.079 Sum_probs=51.4
Q ss_pred cCCCEEEEEECCC------eEEEEEcCCCeEEEEEccCC-CCEEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEE
Q 000936 61 KSQPLFVSGGDDY------KIKVWNYKMHRCLFTLLGHL-DYIRTVQFHHEYPWIVSASDD-----QTIRIWNWQSRTCI 128 (1219)
Q Consensus 61 p~~~~Lasgs~Dg------~I~vWd~~~~~~~~~l~~h~-~~I~~l~fs~d~~~l~s~s~D-----g~I~iwd~~s~~~i 128 (1219)
.++.+++.||.++ .+..||..+++... +.... .........-++...+.|+.+ ..+..||..+++-.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 4566777776542 56778877765432 21111 111111122355666667654 35777887765432
Q ss_pred EEEec-CCCCeEEEEEecCCCEEEEEECC------CeEEEEECCCCc
Q 000936 129 SVLTG-HNHYVMCASFHPKEDLVVSASLD------QTVRVWDIGALR 168 (1219)
Q Consensus 129 ~~~~~-h~~~V~~l~~sp~~~~l~s~s~d------g~I~vwd~~~~~ 168 (1219)
..-.. +...-.+++. -++...+.|+.+ ..+..||..+.+
T Consensus 372 ~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 372 EEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred eCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 21110 1111112222 245666666632 357778876643
No 460
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.63 E-value=26 Score=41.24 Aligned_cols=144 Identities=16% Similarity=0.150 Sum_probs=88.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCe-----EEEEecccCCCEEEEEEec-----CCCEEEEEECCCeEEEEEcCC--Ce---
Q 000936 20 KRPWILASLHSGVIQLWDYRMGT-----LIDRFDEHDGPVRGVHFHK-----SQPLFVSGGDDYKIKVWNYKM--HR--- 84 (1219)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g~-----~i~~l~~h~~~V~~l~fsp-----~~~~Lasgs~Dg~I~vWd~~~--~~--- 84 (1219)
+...|++|+.+|.++||+...+. ++-. ..-..||..+..-+ +...||+ =.-..+.||.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34689999999999999985432 1111 23457888887643 2234444 4446788887721 11
Q ss_pred ----EEEEEccCCC--CEEEEEEcC----C-CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEecCCCEEEEE
Q 000936 85 ----CLFTLLGHLD--YIRTVQFHH----E-YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153 (1219)
Q Consensus 85 ----~~~~l~~h~~--~I~~l~fs~----d-~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~l~s~ 153 (1219)
.+..+..|.- ....++.-| . ..+|.+-+.||.+.+++-+.-.....+.. ---.-.+.|.+..+.++++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 1222222322 222233222 1 24788889999999999554433333332 2223457888889999999
Q ss_pred ECCCeEEEEECCC
Q 000936 154 SLDQTVRVWDIGA 166 (1219)
Q Consensus 154 s~dg~I~vwd~~~ 166 (1219)
+.+..+.-|....
T Consensus 193 sss~~l~~Yky~~ 205 (418)
T PF14727_consen 193 SSSWTLECYKYQD 205 (418)
T ss_pred cCceeEEEecHHH
Confidence 9999999987644
No 461
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=92.59 E-value=1.6 Score=57.32 Aligned_cols=149 Identities=11% Similarity=0.093 Sum_probs=96.6
Q ss_pred hccCHHHHHHhhhcCc---ccch---hHHHHHHhCCChhhhhccccC--------cchhhhHHhhc---CCHHHHHHHHH
Q 000936 606 LRKRYDHVMSMIRNSQ---LCGQ---AMIAYLQQKGFPEVALHFVKD--------ERTRFNLALES---GNIQIAVASAK 668 (1219)
Q Consensus 606 ~~~~~~~a~~~i~~~~---~~~~---~i~~~l~~~g~~e~Al~~~~d--------~~~rf~lal~~---g~~~~A~~~a~ 668 (1219)
..|++++|...++... .... .....+.+.|..+.|...++. ....+.++... |++++|...++
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5788888876665321 1111 112234567777777766532 22234455566 99999988876
Q ss_pred Hh----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcc--------hhhHHHHhcCCHHHHHHHHHHHHHcC-Ch----
Q 000936 669 EI----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFE--------RLSFLYLITGNMDKLSKMLKIAEVKN-DV---- 731 (1219)
Q Consensus 669 ~l----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~--------~l~~l~~~~g~~~~l~kl~~~~~~~~-~~---- 731 (1219)
.. .+...|..+|..+.+.|+++.|+.+|.++-..+ .+..++...|+.+++..+.+.+-... +.
T Consensus 601 ~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~ 680 (987)
T PRK09782 601 RSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI 680 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 42 247789999999999999999999998773322 34455667888888877666553332 22
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHc
Q 000936 732 MGQFHNALYLGDVKERVKILESA 754 (1219)
Q Consensus 732 ~~~~~~al~lgd~~eai~i~~~~ 754 (1219)
.....++..+|++++|+..|.++
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 22233477789999999888886
No 462
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=92.54 E-value=20 Score=48.03 Aligned_cols=382 Identities=10% Similarity=0.073 Sum_probs=175.6
Q ss_pred cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 000936 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (1219)
Q Consensus 50 h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~ 129 (1219)
|-.-++.|.-+++|..+=. .|+.++.||....+..-.-......+..+.-..||+..+ =+ |.+ +-|+.++....
T Consensus 361 H~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA-k~-~~~--l~nLSs~~~~~ 434 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA-KD-DDT--LVNLSSGQMSE 434 (1774)
T ss_pred HHHHhhccccCCCCCeEEe--ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe-cC-CCc--eeecCCCCcch
Confidence 4445666666666655443 355677777654422110001122333444334443222 11 111 22333322111
Q ss_pred EEecCCCCeEEEEEecCCCE-EEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeE
Q 000936 130 VLTGHNHYVMCASFHPKEDL-VVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (1219)
Q Consensus 130 ~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 208 (1219)
. .-..+.+...++++.. ++++.....+.+|++....-.... .......+.+......
T Consensus 435 ~---~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p-------------------~~~~~L~L~dG~a~A~ 492 (1774)
T PF11725_consen 435 A---EVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTP-------------------RKTKTLQLADGKAQAQ 492 (1774)
T ss_pred h---hhhhcccccccCCCceeeeecCCCcceeeeccCccccccCc-------------------cceeeeeccCCchhhh
Confidence 1 1134666777888876 566666667799998764221110 0111223333334667
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCee--eEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEE
Q 000936 209 WAAFHPTLPLIVSGADDRQVKLWRMNETKAW--EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286 (1219)
Q Consensus 209 ~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~--~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~~ 286 (1219)
++.++++ .|++...+|.++.=++.....- .+.....+......-.| -+...++|-. .-..|..-..+
T Consensus 493 ~VgLs~d--rLFvADseGkLYsa~l~~~~~~~~~l~~~p~~~~~~~~~~~--G~~~~VtGF~-------~gd~G~lhAli 561 (1774)
T PF11725_consen 493 SVGLSND--RLFVADSEGKLYSADLPAAQDNEPKLKLMPEPAYQLLGSAL--GGDHKVTGFI-------SGDDGQLHALI 561 (1774)
T ss_pred heeecCC--eEEEEeCCCCEEecccccccCCCcceEeccccccccccccc--cccceeeccc-------cCCCCeeeEEE
Confidence 7888776 5888888998887776543211 11111111100011111 1122222211 11223333344
Q ss_pred ecCCCCEEEEEEeCCCCEEEEE----------eCCCeeEEEecCCcceEEecCCEEEEEeCCeEEEEEecCCccee----
Q 000936 287 RREHDRFWILASHPEMNLLAAG----------HDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQ---- 352 (1219)
Q Consensus 287 ~~~~~~i~~l~~sp~~~~la~g----------~d~gi~v~~l~~~~~~~s~~~~~l~~~~d~~i~v~d~~~~~~~~---- 352 (1219)
+...+.+.+.++..++..+-.| ...|+..-........+.++..-.+...+|.|..||-.+.....
T Consensus 562 kd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~ldl~r~G~v~L~~G~i~~wD~ttq~W~~~~~k 641 (1774)
T PF11725_consen 562 KDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEILDLGRAGLVGLQDGKIQYWDSTTQCWKDAGVK 641 (1774)
T ss_pred eccCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChHHhhccccccceeeccceEeeecCcchhhhhccCc
Confidence 4444445555555444433333 22222111000001122333333333378999999976522110
Q ss_pred -eEeecCCCCC-C---CCCCCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCC-CCCccccccc-cCceeEEEEEeCCe
Q 000936 353 -VIPIRRPGST-S---LNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI-GRGDSVQDAK-KGLGGSAIFIARNR 425 (1219)
Q Consensus 353 -~~~~~~~~~~-~---~~~~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~-~~~~~~~~~~-~~~i~~~~fs~d~~ 425 (1219)
+-.+++.-.. . -.+.+..+.+++.-..+.. + ++..+ ..+.... ...-..+.+- ...|+.++...+++
T Consensus 642 d~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~--g-~~~~~---a~~~~r~~~e~G~~l~Gl~~~~i~a~Avv~~~~ 715 (1774)
T PF11725_consen 642 DIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAH--G-DNNVF---ALPQRRNKVELGDALEGLEDRVITAFAVVNDNK 715 (1774)
T ss_pred CHHHHhccccCCceEecCCceeeeecccCCCcccc--C-CCccc---ccccccCCCCCCccccCCCcCcceeEEEEcCCc
Confidence 0011110000 0 0125556666665443322 1 11122 1211111 1111122222 34578899999989
Q ss_pred EEEEEcCCCEEEEEecCCceeEeeeCC---cceEEEEEeCCCcEEEE-eCCeEEEEE
Q 000936 426 FAVLDKSSNQVLVKNLKNEVVKKSILP---IAADAIFYAGTGNLLCR-AEDRVVIFD 478 (1219)
Q Consensus 426 ~l~~~~~dg~I~Iwdl~~~~~~~i~~~---~~v~~l~~s~dg~~L~s-~d~~I~l~d 478 (1219)
|++... .|.+..+.-.+. ...+..+ ..|..|++.....+.+. .+|.++--+
T Consensus 716 fvald~-qg~lt~h~k~g~-p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~ 770 (1774)
T PF11725_consen 716 FVALDD-QGDLTAHQKPGR-PVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLP 770 (1774)
T ss_pred eEEecc-CCccccccCCCC-CccCCCCCCCcchhheeeccccceeEecCCCceeecC
Confidence 988887 788998883343 3344444 38999999999777765 578776553
No 463
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.53 E-value=23 Score=44.93 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=19.6
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEE
Q 000936 53 PVRGVHFHKSQPLFVSGGDDYKIKV 77 (1219)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs~Dg~I~v 77 (1219)
.|..|.++|+|.+++..|..|...+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE
Confidence 3788889999999998888654443
No 464
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=92.50 E-value=2 Score=56.71 Aligned_cols=178 Identities=18% Similarity=0.150 Sum_probs=108.3
Q ss_pred HHHhccCHHHHHHhhhcCccc---ch----hHHHHHHhCCChhhhhccccCc--------chhh---hHHhhcCCHHHHH
Q 000936 603 LSLLRKRYDHVMSMIRNSQLC---GQ----AMIAYLQQKGFPEVALHFVKDE--------RTRF---NLALESGNIQIAV 664 (1219)
Q Consensus 603 ~~l~~~~~~~a~~~i~~~~~~---~~----~i~~~l~~~g~~e~Al~~~~d~--------~~rf---~lal~~g~~~~A~ 664 (1219)
.....|++++|.+.+...... .. .+...+...|..+.|+..++.. ...+ ...+..|+++.|.
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 451 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKAL 451 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 345567777777666432110 01 1112233455555555444311 1112 2345678999998
Q ss_pred HHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhhHHHHhcCCHHHHHHHHHHHHHcC-C
Q 000936 665 ASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKIAEVKN-D 730 (1219)
Q Consensus 665 ~~a~~l-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~~l~kl~~~~~~~~-~ 730 (1219)
+.++.. +++..|..+|..+...|+++.|+.+|.++-. +..+..+|...|+++++.+..+...... +
T Consensus 452 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 531 (899)
T TIGR02917 452 AAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531 (899)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC
Confidence 887764 4577899999999999999999999988633 2245667778899988776655442222 1
Q ss_pred h----hHHHHHHHhcCCHHHHHHHHHHcC-----CChH---HHHHHHhcCChHHHHHHHHHc
Q 000936 731 V----MGQFHNALYLGDVKERVKILESAG-----HLPL---AYITASVHGLQDVAERLAAEL 780 (1219)
Q Consensus 731 ~----~~~~~~al~lgd~~eai~i~~~~g-----~~~~---A~~la~~~g~~~~a~~l~~~~ 780 (1219)
. .....++...|++++|+.+|.+.- .... -.......|..+.|.++.+..
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1 222344666799999988887641 1111 123344567788888877664
No 465
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.12 E-value=45 Score=42.78 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcCC
Q 000936 743 DVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGD 782 (1219)
Q Consensus 743 d~~eai~i~~~~g~~~~A~~la~~~g~~~~a~~l~~~~~~ 782 (1219)
++++.+.++.+.+++.+-+.++++.|+.++|.++..+...
T Consensus 493 ~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 493 DVEEIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred chHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999988763
No 466
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=92.07 E-value=1.5 Score=46.86 Aligned_cols=79 Identities=19% Similarity=0.329 Sum_probs=61.1
Q ss_pred hHHhhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhhHHHHhcCCHHHH
Q 000936 652 NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKL 718 (1219)
Q Consensus 652 ~lal~~g~~~~A~~~a~~l-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~~l 718 (1219)
...+..||+..|...+.+. +|.+.|.-+|-.+.+.|+++.|...|.++-++ ..+...|...|+.+.+
T Consensus 108 k~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 108 KNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred HHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHH
Confidence 4567889999999998763 66788999999999999999999999888443 3455666777777777
Q ss_pred HHHHHHHHHcCC
Q 000936 719 SKMLKIAEVKND 730 (1219)
Q Consensus 719 ~kl~~~~~~~~~ 730 (1219)
+++..-+.....
T Consensus 188 ~~lll~a~l~~~ 199 (257)
T COG5010 188 ETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHHhCCC
Confidence 777665555444
No 467
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=92.00 E-value=1.2 Score=46.83 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=58.3
Q ss_pred hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcch--------hhH-HHHhcCC--HHHHHHHHHHHHHcCCh-----hH
Q 000936 670 IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFER--------LSF-LYLITGN--MDKLSKMLKIAEVKNDV-----MG 733 (1219)
Q Consensus 670 l~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~--------l~~-l~~~~g~--~~~l~kl~~~~~~~~~~-----~~ 733 (1219)
=++.+.|..||..++..|+++.|..+|.++-..+- +.. +|...|+ .+++.++.+.+-..+.. +.
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence 36788999999999999999999999998844321 222 3445566 36666666655443332 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHc
Q 000936 734 QFHNALYLGDVKERVKILESA 754 (1219)
Q Consensus 734 ~~~~al~lgd~~eai~i~~~~ 754 (1219)
.+..+...|++++|+..|.+.
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 233366778888888888774
No 468
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=92.00 E-value=32 Score=40.91 Aligned_cols=267 Identities=12% Similarity=0.044 Sum_probs=128.2
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccC-CCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE
Q 000936 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHD-GPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF 87 (1219)
Q Consensus 9 ~~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~-~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~ 87 (1219)
..+|..+.+.-.| .+.+|+.+| +..||..+++.++.-.... .+|..+.-+-.| .|.+|+++| |.+.+....+...
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 4578888888877 566777888 6778888888776654433 667766666666 477777776 6666655422211
Q ss_pred EEc-cCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EEecCC--CCeEEEEEecCCCEEEEEECCCeEEEEE
Q 000936 88 TLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS-VLTGHN--HYVMCASFHPKEDLVVSASLDQTVRVWD 163 (1219)
Q Consensus 88 ~l~-~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~-~~~~h~--~~V~~l~~sp~~~~l~s~s~dg~I~vwd 163 (1219)
... -....|..+.-..+| .+-.|+..|..+ .....+.... ..+-|. +.|.++....+| .+-+++.+|.+++-+
T Consensus 240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG-sLWv~t~~giv~~~~ 316 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDG-SLWVGTYGGIVRYLT 316 (671)
T ss_pred cCCCCcchheeeeecccCC-CEEEeeccccee-EecCCCCccccccccCCccccccceeeccCC-CEeeeccCceEEEec
Confidence 111 122334444333333 344455555332 2222222221 122222 234455444455 466666676665544
Q ss_pred CCCCccccccCCccceeeccccccccccccceEEEEEeecCCCe-EEEEEcC--CCCEEEEEeCCCeEEEEECCCCCeee
Q 000936 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV-NWAAFHP--TLPLIVSGADDRQVKLWRMNETKAWE 240 (1219)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-~~l~~sp--~g~~l~sg~~dg~I~iwd~~~~~~~~ 240 (1219)
-.-..... +...++.+ -..+..| .+..+-....-|.+.+-+-.++..+.
T Consensus 317 a~w~~ma~----------------------------in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~ 368 (671)
T COG3292 317 ADWKRMAV----------------------------INDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVR 368 (671)
T ss_pred chhhheee----------------------------eecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEE
Confidence 32111100 00000000 0011111 01111111112222333333333321
Q ss_pred -EEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEEEEec-CCCCEEEEEEeCCCCEEEEEeCCCee
Q 000936 241 -VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK-RTGVQTFRR-EHDRFWILASHPEMNLLAAGHDSGMI 314 (1219)
Q Consensus 241 -~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~-~~~~~~~~~-~~~~i~~l~~sp~~~~la~g~d~gi~ 314 (1219)
+...+ ..+|+.+++..+|. +-.++...-+..|+..+ +..+..... ..+++..+.-.|+++ +-.|+.+|+.
T Consensus 369 sv~q~R--g~nit~~~~d~~g~-lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glv 441 (671)
T COG3292 369 SVHQLR--GMNITTTLEDSRGR-LWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLV 441 (671)
T ss_pred Eeeecc--ccccchhhhccCCc-EEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeE
Confidence 22222 35677777777554 55555553466677665 333333222 345677788888888 6667666643
No 469
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=91.93 E-value=1.6 Score=56.43 Aligned_cols=78 Identities=17% Similarity=0.004 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhhcC--------cchhhHHHHhcCCHHHHHHHHHHHHHcCCh-----hHHHHHHHhcC
Q 000936 676 WYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKIAEVKNDV-----MGQFHNALYLG 742 (1219)
Q Consensus 676 w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~~l~kl~~~~~~~~~~-----~~~~~~al~lg 742 (1219)
+..+|.....+|+++.|+.+|.++-. +-.+..++...|+++++.++.+.+....-. ...+.+++.+|
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 34556666666666666666655311 223334444556666555555444332211 12233455555
Q ss_pred CHHHHHHHHHH
Q 000936 743 DVKERVKILES 753 (1219)
Q Consensus 743 d~~eai~i~~~ 753 (1219)
++++|+.++.+
T Consensus 442 ~~~~A~~~~~~ 452 (765)
T PRK10049 442 EWRQMDVLTDD 452 (765)
T ss_pred CHHHHHHHHHH
Confidence 55555555544
No 470
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=91.86 E-value=0.17 Score=56.76 Aligned_cols=128 Identities=23% Similarity=0.267 Sum_probs=28.8
Q ss_pred hHHhhcCCHHHHHHHHHH-------hCChhHHHHHHHHHHHcCChhHHHHHHHhh--------cCcchhhHHHHhcCCHH
Q 000936 652 NLALESGNIQIAVASAKE-------IDEKDHWYRLGVEALRQGNAGIVEYAYQRT--------KNFERLSFLYLITGNMD 716 (1219)
Q Consensus 652 ~lal~~g~~~~A~~~a~~-------l~~~~~w~~La~~al~~g~~~~Ae~~y~~~--------~d~~~l~~l~~~~g~~~ 716 (1219)
.+....|+++.|++..+. .+++..|..+|..+...++++.|+.+|.++ .++..+..+ +..++++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~ 94 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 445667888888888742 356789999999999999999999999876 466666666 6788999
Q ss_pred HHHHHHHHHHHcCC----hhHHHHHHHhcCCHHHHHHHHHHcCCC-----h-----HHHHHHHhcCChHHHHHHHHHc
Q 000936 717 KLSKMLKIAEVKND----VMGQFHNALYLGDVKERVKILESAGHL-----P-----LAYITASVHGLQDVAERLAAEL 780 (1219)
Q Consensus 717 ~l~kl~~~~~~~~~----~~~~~~~al~lgd~~eai~i~~~~g~~-----~-----~A~~la~~~g~~~~a~~l~~~~ 780 (1219)
++.++.+.+-.+.. .......+...|++++++.++.+.-.. + ..-.++...|..++|.+..++.
T Consensus 95 ~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887765422221 134445577789999999888772111 1 1123456788899999888763
No 471
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.85 E-value=11 Score=39.35 Aligned_cols=169 Identities=15% Similarity=0.171 Sum_probs=90.6
Q ss_pred eEEecC-CEEEEE-eCCeEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCEEEEEEeCCC-C---EEEEEEec
Q 000936 324 AFAVSG-DSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDG-G---SYELYVIP 397 (1219)
Q Consensus 324 ~~s~~~-~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~d-g---~i~l~~~~ 397 (1219)
.+...| +.|+++ ....|.+|++.+........+...+ .|..+.++..|++++..-.... . .+++|-=.
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~------~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NW 95 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVG------RVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNW 95 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchh------heeEEEeccccceEEEEEeecCCccceEEEEEEEh
Confidence 333344 566664 7788999999966666666666533 8889999999999887654222 2 45665422
Q ss_pred CCCCCCCccccccccCceeEEEEEeCCeEEEEEcCCCEEEEEecC-CceeEeeeCCcceEEEEEeCC-CcEEEEeCCeEE
Q 000936 398 KDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPIAADAIFYAGT-GNLLCRAEDRVV 475 (1219)
Q Consensus 398 ~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~i~~~~~v~~l~~s~d-g~~L~s~d~~I~ 475 (1219)
... .....++. +... |. -+..+..... . .-.+..+....++..++.-|- |++++..++.+.
T Consensus 96 r~~--------~~~~~~v~-vRia--G~-~v~~~~~~~~-----~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~ 158 (215)
T PF14761_consen 96 RSQ--------KEENSPVR-VRIA--GH-RVTPSFNESS-----KDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLV 158 (215)
T ss_pred hhh--------cccCCcEE-EEEc--cc-ccccCCCCcc-----ccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEE
Confidence 111 00011111 1110 10 0011100100 0 012233444447788887774 999999999999
Q ss_pred EEEcCCCeE-EEEEec-------------CCeeEEEEcCCCCEEEEEeCCeEEEEe
Q 000936 476 IFDLQQRLV-LGDLQT-------------PFVKYVVWSNDMESVALLSKHAIIIAS 517 (1219)
Q Consensus 476 l~dl~~~~~-l~~~~~-------------~~v~~v~ws~dg~~la~~s~~~i~i~~ 517 (1219)
||.+..+.. ...+.. -.++.+++ -+.|+|+.++..+.++.
T Consensus 159 lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~i--c~~yiA~~s~~ev~Vlk 212 (215)
T PF14761_consen 159 LFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAI--CEGYIAVMSDLEVLVLK 212 (215)
T ss_pred EEEEEEEEEecccccEEechhhhhheecCceEEEEEE--EeeEEEEecCCEEEEEE
Confidence 998765443 111110 11233333 24677777777766643
No 472
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.69 E-value=1.3 Score=55.69 Aligned_cols=153 Identities=9% Similarity=0.034 Sum_probs=92.2
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCC-----------eEE-----EEecc-cCCCEEEEEEecCCCEEEEE--ECCCe
Q 000936 14 GLSFHSKRPWILASLHSGVIQLWDYRMG-----------TLI-----DRFDE-HDGPVRGVHFHKSQPLFVSG--GDDYK 74 (1219)
Q Consensus 14 ~i~fspdg~~Lasg~~dg~I~iWd~~~g-----------~~i-----~~l~~-h~~~V~~l~fsp~~~~Lasg--s~Dg~ 74 (1219)
.++.++.-..+++++..+.+.|+-..+- .++ ..+.- ..-+|..+...+|+...++. +.+-.
T Consensus 46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~ 125 (1405)
T KOG3630|consen 46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA 125 (1405)
T ss_pred hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence 4555665566666666776776654321 111 11221 23455556666776654443 33447
Q ss_pred EEEEEcCCCe--------EEE---EEccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEE
Q 000936 75 IKVWNYKMHR--------CLF---TLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142 (1219)
Q Consensus 75 I~vWd~~~~~--------~~~---~l~~h~~~I~~l~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~~~~h~~~V~~l~ 142 (1219)
|.++|+++-. ++. +.........++.|+|.-+ ..+.+..|+.|++..+........-......++|++
T Consensus 126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~ 205 (1405)
T KOG3630|consen 126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVL 205 (1405)
T ss_pred EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEE
Confidence 8889986421 111 1112233566788888654 456677789998887653322222123456689999
Q ss_pred EecCCCEEEEEECCCeEEEEECCC
Q 000936 143 FHPKEDLVVSASLDQTVRVWDIGA 166 (1219)
Q Consensus 143 ~sp~~~~l~s~s~dg~I~vwd~~~ 166 (1219)
|+|.|..++.|-..|++.-|....
T Consensus 206 WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 206 WSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred eccccceeeEecCCCeEEEeeccc
Confidence 999999999999999998887654
No 473
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=91.65 E-value=6 Score=50.17 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=79.9
Q ss_pred HhhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhH----HHHHHHhhcC--------cchhhHHHHhcCCHH
Q 000936 654 ALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGI----VEYAYQRTKN--------FERLSFLYLITGNMD 716 (1219)
Q Consensus 654 al~~g~~~~A~~~a~~-----l~~~~~w~~La~~al~~g~~~~----Ae~~y~~~~d--------~~~l~~l~~~~g~~~ 716 (1219)
..+.|++++|.+.++. -+++..+..||..+...|+++. |+..|.++-. +..+..++...|+.+
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 4456777777777664 2456677888888888888875 6777766632 224556667788888
Q ss_pred HHHHHHHHHHHcC-Chh----HHHHHHHhcCCHHHHHHHHHHcC----CChHHH----HHHHhcCChHHHHHHHHHc
Q 000936 717 KLSKMLKIAEVKN-DVM----GQFHNALYLGDVKERVKILESAG----HLPLAY----ITASVHGLQDVAERLAAEL 780 (1219)
Q Consensus 717 ~l~kl~~~~~~~~-~~~----~~~~~al~lgd~~eai~i~~~~g----~~~~A~----~la~~~g~~~~a~~l~~~~ 780 (1219)
++....+.+.... +.. ....++...|++++|+..|.+.- ....++ .+....|..++|.+..++.
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8776655443322 221 12334667799999988887632 111111 2345678888888887663
No 474
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.50 E-value=24 Score=38.43 Aligned_cols=195 Identities=10% Similarity=-0.013 Sum_probs=111.2
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeE---EEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCC---
Q 000936 52 GPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC---LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR--- 125 (1219)
Q Consensus 52 ~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~---~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~--- 125 (1219)
+-+..+.++.+ +...+..+.-++|.|+.+... +..+. -.+.-.++.. .|++...+..|.-+.+.|+.+.
T Consensus 87 ~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 87 DLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 33455666544 566666667799999876432 22222 2244455544 4678888886666778887643
Q ss_pred eEEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCC
Q 000936 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR 205 (1219)
Q Consensus 126 ~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1219)
+..............++.+ |++-..+..|+-+.+.|+........ ........
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvl-------------------------i~~~n~g~ 214 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVL-------------------------IGSYNTGP 214 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeE-------------------------EEEEecCC
Confidence 3333444444444556665 78888888999999999987543211 01111233
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000936 206 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1219)
Q Consensus 206 ~V~~l~~sp~g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~ 280 (1219)
.+.++..+++.-+++... --+.+-|.++.+...+.-.....+++.--.+.-.+++......+.-+.+-|+++.
T Consensus 215 g~~sv~vsdnr~y~vvy~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 215 GTYSVSVSDNRAYLVVYD--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred ceEEEEecCCeeEEEEcc--cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 778888888765555543 3466777777663223322222333222122224566666665665666666543
No 475
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.08 E-value=3.4 Score=46.92 Aligned_cols=116 Identities=19% Similarity=0.117 Sum_probs=77.6
Q ss_pred hHHhhcCCHHHHHHHHHH--hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCc---chhhHHHHhcCCHHHHHHHHHHHH
Q 000936 652 NLALESGNIQIAVASAKE--IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF---ERLSFLYLITGNMDKLSKMLKIAE 726 (1219)
Q Consensus 652 ~lal~~g~~~~A~~~a~~--l~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~---~~l~~l~~~~g~~~~l~kl~~~~~ 726 (1219)
...+..|+...|.++.++ +.++..|-.--+.....++|+.-+.....-+-. +-.....+..|+..
T Consensus 185 ~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~---------- 254 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKK---------- 254 (319)
T ss_pred HHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHH----------
Confidence 446778888888888776 566777777777777778888777643321111 11111112233333
Q ss_pred HcCChhHHHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcCCCC
Q 000936 727 VKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNV 784 (1219)
Q Consensus 727 ~~~~~~~~~~~al~lgd~~eai~i~~~~g~~~~A~~la~~~g~~~~a~~l~~~~~~~~ 784 (1219)
.+..+--...+ ++++++|+++|.|.+|.+.|...++.+....+.+....++
T Consensus 255 ------eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~~~~ 305 (319)
T PF04840_consen 255 ------EASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCPGNN 305 (319)
T ss_pred ------HHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCCCCC
Confidence 32223233566 9999999999999999999999999999999988765444
No 476
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.06 E-value=8.6 Score=44.95 Aligned_cols=150 Identities=14% Similarity=0.034 Sum_probs=79.0
Q ss_pred CCEEEEEEcCCCCEEEEEE-----------CCC-eEEEEECCC--Ce--EEEEEecCCCCeEEEEEecCCCEEEEEECCC
Q 000936 94 DYIRTVQFHHEYPWIVSAS-----------DDQ-TIRIWNWQS--RT--CISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (1219)
Q Consensus 94 ~~I~~l~fs~d~~~l~s~s-----------~Dg-~I~iwd~~s--~~--~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg 157 (1219)
.....|+|.++|+.+++-. ..+ .|.+++-.+ |+ ....+.........+++.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4567889999988666542 123 677776432 32 223443334456889999888 44444444
Q ss_pred eEEEEECCCCccccccCCccceeeccccccccccccceEEEEEee----cCCCeEEEEEcCCCCEEEEEeCC--------
Q 000936 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG----HDRGVNWAAFHPTLPLIVSGADD-------- 225 (1219)
Q Consensus 158 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~V~~l~~sp~g~~l~sg~~d-------- 225 (1219)
..++.|......... . ...+...+.. +....+.++|.|+|.+.++-+..
T Consensus 92 i~~~~d~~gdg~ad~-~------------------~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~ 152 (367)
T TIGR02604 92 ILFLRDKDGDDKADG-E------------------REVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRP 152 (367)
T ss_pred EEEEeCCCCCCCCCC-c------------------cEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccC
Confidence 333445433211100 0 0000111111 23457789999999876655421
Q ss_pred -----------CeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEe
Q 000936 226 -----------RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267 (1219)
Q Consensus 226 -----------g~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s 267 (1219)
|.|..++..+.+. ..+.....+...++|+|+|+++++-.
T Consensus 153 ~~~~~~~~~~~g~i~r~~pdg~~~---e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 153 GTSDESRQGLGGGLFRYNPDGGKL---RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCccCcccccCceEEEEecCCCeE---EEEecCcCCCccceECCCCCEEEEcc
Confidence 3455555555442 22222234456888998888776543
No 477
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=90.92 E-value=1.1 Score=39.66 Aligned_cols=75 Identities=23% Similarity=0.204 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHHh----C---ChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHHHHHHcC
Q 000936 657 SGNIQIAVASAKEI----D---EKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKN 729 (1219)
Q Consensus 657 ~g~~~~A~~~a~~l----~---~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~~~~~~ 729 (1219)
.|+++.|+..+.++ . +...|-.+|..+.++|+++.|...+++ ...+.- +.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--------~~~~------------ 60 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--------NPDI------------ 60 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--------HHHH------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--------CHHH------------
Confidence 46777777776542 2 456788899999999999999999987 111110 0011
Q ss_pred ChhHHHHHHHhcCCHHHHHHHHHH
Q 000936 730 DVMGQFHNALYLGDVKERVKILES 753 (1219)
Q Consensus 730 ~~~~~~~~al~lgd~~eai~i~~~ 753 (1219)
....+.++..+|++++|++.|.+
T Consensus 61 -~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 61 -HYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCHHHHHHHHhc
Confidence 11225688899999999998875
No 478
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=90.56 E-value=1.4 Score=43.85 Aligned_cols=80 Identities=9% Similarity=-0.039 Sum_probs=55.0
Q ss_pred HhhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhhHHHHhcCCHHHHHHHHHHHHHc
Q 000936 654 ALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVK 728 (1219)
Q Consensus 654 al~~g~~~~A~~~a~~-----l~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~~~~~ 728 (1219)
+.+.|+++.|...++. -++...|..+|..+...|+++.|..+|.++-..+ -++.+....+
T Consensus 34 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--------p~~~~a~~~l------- 98 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--------ASHPEPVYQT------- 98 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCcHHHHHH-------
Confidence 4667888888877765 3567889999999999999999999998874321 1222222222
Q ss_pred CChhHHHHHHHhcCCHHHHHHHHHHc
Q 000936 729 NDVMGQFHNALYLGDVKERVKILESA 754 (1219)
Q Consensus 729 ~~~~~~~~~al~lgd~~eai~i~~~~ 754 (1219)
..++..+|++++|+..|..+
T Consensus 99 ------g~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 99 ------GVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred ------HHHHHHcCCHHHHHHHHHHH
Confidence 23566677777777777553
No 479
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=90.53 E-value=53 Score=40.64 Aligned_cols=109 Identities=15% Similarity=0.148 Sum_probs=63.2
Q ss_pred CEEEEEEe--CCCCEEEEEEecCCCC--CCCccccccccCceeEEEEE-eCCeEEEEEcCCCEEEEEecC-CceeEeeeC
Q 000936 378 NAVLICSD--VDGGSYELYVIPKDSI--GRGDSVQDAKKGLGGSAIFI-ARNRFAVLDKSSNQVLVKNLK-NEVVKKSIL 451 (1219)
Q Consensus 378 ~~llv~~~--~~dg~i~l~~~~~~~~--~~~~~~~~~~~~~i~~~~fs-~d~~~l~~~~~dg~I~Iwdl~-~~~~~~i~~ 451 (1219)
.++++.+. +..-.++++.+..... .++. ....+........|. .+|++... .+++|.+|++. -+..+++..
T Consensus 193 ~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~-s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l 269 (670)
T PF10395_consen 193 DLLLTVSQLSNSKLSYKLISLSNESSSIFELS-STILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISL 269 (670)
T ss_pred ceEEEEEEcCCCcEEEEEEEeccCCcceEEee-hheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEe
Confidence 34444444 3445788888822221 1111 001111122233333 26777666 36899999997 666777776
Q ss_pred Cc-------ceEEEEEeCCCcEEEEeCCeEEEEEcCCCeEEEEEe
Q 000936 452 PI-------AADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQ 489 (1219)
Q Consensus 452 ~~-------~v~~l~~s~dg~~L~s~d~~I~l~dl~~~~~l~~~~ 489 (1219)
+. .+.++..-...++|++.++.|++.|+.=...+.++.
T Consensus 270 ~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 270 PSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred chhhccccccceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 63 233444333478888889999999987776666665
No 480
>PRK12370 invasion protein regulator; Provisional
Probab=90.36 E-value=4.1 Score=50.59 Aligned_cols=126 Identities=9% Similarity=-0.031 Sum_probs=82.4
Q ss_pred HhhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcc--------hhhHHHHhcCCHHHHHH
Q 000936 654 ALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFE--------RLSFLYLITGNMDKLSK 720 (1219)
Q Consensus 654 al~~g~~~~A~~~a~~-----l~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~--------~l~~l~~~~g~~~~l~k 720 (1219)
....|++++|...++. =+++..|..+|..+..+|+++.|...|.++-..+ .+..++...|+.+++..
T Consensus 348 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 348 NTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 3567999999988765 2456789999999999999999999999972221 12234566899988877
Q ss_pred HHHHHHHcC---Ch---hHHHHHHHhcCCHHHHHHHHHHcCCCh-----HHHHHHHh-cCChHHHHHHHHH
Q 000936 721 MLKIAEVKN---DV---MGQFHNALYLGDVKERVKILESAGHLP-----LAYITASV-HGLQDVAERLAAE 779 (1219)
Q Consensus 721 l~~~~~~~~---~~---~~~~~~al~lgd~~eai~i~~~~g~~~-----~A~~la~~-~g~~~~a~~l~~~ 779 (1219)
..+.+.... .. .....++..+|++++|+..+.+.-.-+ ....++.. .+..+.+...++.
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ 498 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIRE 498 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHHHHHHH
Confidence 766543322 22 123344667899999999998743221 12223322 3444566665544
No 481
>PHA02790 Kelch-like protein; Provisional
Probab=90.24 E-value=11 Score=45.80 Aligned_cols=104 Identities=9% Similarity=-0.012 Sum_probs=50.3
Q ss_pred cCCCEEEEEECCC-----eEEEEEcCCCeEEEEEccCCCCE-EEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEE--E
Q 000936 61 KSQPLFVSGGDDY-----KIKVWNYKMHRCLFTLLGHLDYI-RTVQFHHEYPWIVSASDD--QTIRIWNWQSRTCIS--V 130 (1219)
Q Consensus 61 p~~~~Lasgs~Dg-----~I~vWd~~~~~~~~~l~~h~~~I-~~l~fs~d~~~l~s~s~D--g~I~iwd~~s~~~i~--~ 130 (1219)
.++.++++||.++ .+..||..+++....-.-..... .+++ .-++...+.|+.+ .++..||..+++-.. .
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 3455667777542 56678877665433211111111 1122 2356666666653 357788876553322 1
Q ss_pred EecCCCCeEEEEEecCCCEEEEEECCC---eEEEEECCCC
Q 000936 131 LTGHNHYVMCASFHPKEDLVVSASLDQ---TVRVWDIGAL 167 (1219)
Q Consensus 131 ~~~h~~~V~~l~~sp~~~~l~s~s~dg---~I~vwd~~~~ 167 (1219)
+...... .+++ .-+|...+.|+.++ .+..||..+.
T Consensus 349 l~~~r~~-~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 349 LLKPRCN-PAVA-SINNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCCCCcc-cEEE-EECCEEEEecCcCCCCccEEEEeCCCC
Confidence 1111111 1122 22566667776543 3566776553
No 482
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.17 E-value=17 Score=38.19 Aligned_cols=103 Identities=15% Similarity=0.236 Sum_probs=64.3
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCC------cEEEE---eCC--CCeeEE-
Q 000936 217 PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK------SIRVW---DVT--KRTGVQ- 284 (1219)
Q Consensus 217 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg------~I~iw---dl~--~~~~~~- 284 (1219)
..|+.+...+.|.+|++..........+..- +.|..+.++..|++|++--++. .+|+| ... ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4454446678899999996555445566544 7899999999999999864322 45665 211 111111
Q ss_pred --------------------EEe-cCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecC
Q 000936 285 --------------------TFR-REHDRFWILASHPEMNLLAAGHDSGMIVFKLER 320 (1219)
Q Consensus 285 --------------------~~~-~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~ 320 (1219)
.+. .....+.+++..|-..-|++|+++.+.+|.+..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 000 012345677777766667777888888876643
No 483
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.09 E-value=1.5 Score=46.90 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=37.6
Q ss_pred CCeeEEEEcCCCCEEEEEeCCeEEEEecCccceeeeeee-eEEeeeEEe
Q 000936 491 PFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHET-IRVKSGAWD 538 (1219)
Q Consensus 491 ~~v~~v~ws~dg~~la~~s~~~i~i~~~~l~~~~~~~e~-~~iks~~wd 538 (1219)
..|..+..+.+|.-++..++...|.|+.++.....+.+. ..+.|..|+
T Consensus 67 ~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~W~~vsd~w~~~~S~~~~ 115 (219)
T PF07569_consen 67 PNITSCSLTSNGVPIVTLSNGDSYSYSPDLGCWIRVSDSWWAIGSQYWD 115 (219)
T ss_pred CcEEEEEEcCCCCEEEEEeCCCEEEeccccceeEEeccchhhhhccccc
Confidence 457888889999989999988899999998888777775 344455554
No 484
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=89.97 E-value=4 Score=55.67 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=76.2
Q ss_pred hHHhhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhhHHHHhcCCHHHH
Q 000936 652 NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKL 718 (1219)
Q Consensus 652 ~lal~~g~~~~A~~~a~~l-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~~l 718 (1219)
.+..+.|+++.|++.++.. +++..|..+|..+...|+++.|+.+|.++-.. ..+..++...|+.+++
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHH
Confidence 3456789999999888752 56789999999999999999999999877432 2356677889999998
Q ss_pred HHHHHHHHHcC--Ch---------hHHHHHHHhcCCHHHHHHHHHHc
Q 000936 719 SKMLKIAEVKN--DV---------MGQFHNALYLGDVKERVKILESA 754 (1219)
Q Consensus 719 ~kl~~~~~~~~--~~---------~~~~~~al~lgd~~eai~i~~~~ 754 (1219)
.++.+.+.... +. ...+.++...|+.++|+..|.++
T Consensus 691 ~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 691 QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88777554332 11 11244566778888888888776
No 485
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.76 E-value=3.1 Score=47.09 Aligned_cols=101 Identities=15% Similarity=0.237 Sum_probs=62.8
Q ss_pred hHHHHHhccCHHHHHHhhhcCcccc----------hhHHHHHH-------hCCChhhhhccccC-c--c-hhhhHHhhcC
Q 000936 600 IFKLSLLRKRYDHVMSMIRNSQLCG----------QAMIAYLQ-------QKGFPEVALHFVKD-E--R-TRFNLALESG 658 (1219)
Q Consensus 600 ~f~~~l~~~~~~~a~~~i~~~~~~~----------~~i~~~l~-------~~g~~e~Al~~~~d-~--~-~rf~lal~~g 658 (1219)
.-...+.+|+++.|.++++.-+... ...+.||+ ...|.++|+..=+- + . -+=+.+...|
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecC
Confidence 3445678999998877775321111 12334553 23455555543211 0 0 0234456689
Q ss_pred CHHHHHHHHHHh--CCh---hHHHHHHHHHHHcCChhHHHHHHHhhc
Q 000936 659 NIQIAVASAKEI--DEK---DHWYRLGVEALRQGNAGIVEYAYQRTK 700 (1219)
Q Consensus 659 ~~~~A~~~a~~l--~~~---~~w~~La~~al~~g~~~~Ae~~y~~~~ 700 (1219)
+++.|.+.+++. ++. +..-.+|-.+..+|+++.|..||.+++
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh 551 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLH 551 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH
Confidence 999999999873 333 344556888999999999999998864
No 486
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=89.68 E-value=72 Score=40.92 Aligned_cols=191 Identities=12% Similarity=0.106 Sum_probs=90.6
Q ss_pred eEEEEEecCCcceeeEeecCCCCCCCCCCCeEEEEccCCCE-EEEEEeC----------CCCEEEEEEecCCCCCCCccc
Q 000936 339 FLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENA-VLICSDV----------DGGSYELYVIPKDSIGRGDSV 407 (1219)
Q Consensus 339 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~-llv~~~~----------~dg~i~l~~~~~~~~~~~~~~ 407 (1219)
.|++.|..+++.+....+..... ...+..+.|+..+.. ++.++.. .+|.+..|++-.... ++. .
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~---a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~-~le-l 928 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEA---AFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD-KLE-L 928 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcc---hhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc-eee-e
Confidence 58888888888777766655422 226667777755443 3333221 123455665543321 110 1
Q ss_pred cccccCceeEEEEEeCCeEEEEEcCCCEEEEEecCCc-eeEeee---CCcceEEEEEeCCCcEEEEeC--Ce--EEEEEc
Q 000936 408 QDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE-VVKKSI---LPIAADAIFYAGTGNLLCRAE--DR--VVIFDL 479 (1219)
Q Consensus 408 ~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~-~~~~i~---~~~~v~~l~~s~dg~~L~s~d--~~--I~l~dl 479 (1219)
+....-...-.+..|-..++..+- ...+++|++..+ .++... .+..|+.+.+... .++.+| .. ...|+-
T Consensus 929 lh~T~~~~~v~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~--RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen 929 LHKTEIPGPVGAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGA--RIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred eeccCCCccceEEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhccCceEEEEEeecce--EEEEeeccceEEEEEEec
Confidence 111111222345555544444444 489999999843 332222 2336666666544 454443 33 444555
Q ss_pred CCCeEEEEEec---CCeeEEEEcCCCCEEEEEeC-CeEEEEecCccceeeeeeeeEEeeeEEe
Q 000936 480 QQRLVLGDLQT---PFVKYVVWSNDMESVALLSK-HAIIIASKKLVHQCTLHETIRVKSGAWD 538 (1219)
Q Consensus 480 ~~~~~l~~~~~---~~v~~v~ws~dg~~la~~s~-~~i~i~~~~l~~~~~~~e~~~iks~~wd 538 (1219)
..++.+.-... ..|+.+..- |-..+|.+.+ .++++....-+......|....-+.+|+
T Consensus 1006 ~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~~k~~~~ 1067 (1205)
T KOG1898|consen 1006 EDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPDVSEEASEDPTELKIAWE 1067 (1205)
T ss_pred CCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCcchhhhccCCccccceec
Confidence 55554433322 223333333 3333555555 4466655443333333332222345564
No 487
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=89.41 E-value=4.8 Score=50.01 Aligned_cols=123 Identities=20% Similarity=0.189 Sum_probs=70.4
Q ss_pred hhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhc--------CcchhhHHHHhcCCHHHHHHH
Q 000936 655 LESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTK--------NFERLSFLYLITGNMDKLSKM 721 (1219)
Q Consensus 655 l~~g~~~~A~~~a~~-----l~~~~~w~~La~~al~~g~~~~Ae~~y~~~~--------d~~~l~~l~~~~g~~~~l~kl 721 (1219)
-+.||++.|+.+.-. -++++.|..||+.+.++|+++.|..||-++= -.-+=+.||..+|+..++..=
T Consensus 184 EqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~ 263 (895)
T KOG2076|consen 184 EQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMET 263 (895)
T ss_pred HHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHH
Confidence 446777777666432 3567899999999999999999999997761 112224455666666554311
Q ss_pred -HHHHHHcC---------ChhHHHHHHHhcCCHHHHHHHHHHc----------CCChHHHHHHHhcCChHHHHHHH
Q 000936 722 -LKIAEVKN---------DVMGQFHNALYLGDVKERVKILESA----------GHLPLAYITASVHGLQDVAERLA 777 (1219)
Q Consensus 722 -~~~~~~~~---------~~~~~~~~al~lgd~~eai~i~~~~----------g~~~~A~~la~~~g~~~~a~~l~ 777 (1219)
.++.+.-+ -.-..++.+...++-+.|++.+... -.++...++.-++..++.+...+
T Consensus 264 f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i 339 (895)
T KOG2076|consen 264 FLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKI 339 (895)
T ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHH
Confidence 11111111 0112244455556666666655442 22334555555666666665554
No 488
>PHA02790 Kelch-like protein; Provisional
Probab=89.20 E-value=14 Score=44.90 Aligned_cols=144 Identities=9% Similarity=-0.092 Sum_probs=68.2
Q ss_pred CCCEEEEEECCC-----eEEEEECCCCeEEEEecccCCCEEEEEEecCCCEEEEEECC--CeEEEEEcCCCeEEEEEccC
Q 000936 20 KRPWILASLHSG-----VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD--YKIKVWNYKMHRCLFTLLGH 92 (1219)
Q Consensus 20 dg~~Lasg~~dg-----~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D--g~I~vWd~~~~~~~~~l~~h 92 (1219)
++..+++|+.++ ++..||..+++....-.-...........-++.+.+.||.+ ..+..||..+++....-.-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 344557776543 46678877765443221111111111123467777888754 45778887655432211111
Q ss_pred CCCEEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEE--EecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 000936 93 LDYIRTVQFHHEYPWIVSASDD---QTIRIWNWQSRTCISV--LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGAL 167 (1219)
Q Consensus 93 ~~~I~~l~fs~d~~~l~s~s~D---g~I~iwd~~s~~~i~~--~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~ 167 (1219)
..........-++...+.|+.+ ..+..||..+.+-... +...... .+++ .-++...+.| |.+.+||..+.
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~-~~~~~IYv~G---G~~e~ydp~~~ 425 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCAL-VFGRRLFLVG---RNAEFYCESSN 425 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEE-EECCEEEEEC---CceEEecCCCC
Confidence 1111111222356666666654 3467788776543221 1111111 1222 2245555555 45677887654
Q ss_pred c
Q 000936 168 R 168 (1219)
Q Consensus 168 ~ 168 (1219)
+
T Consensus 426 ~ 426 (480)
T PHA02790 426 T 426 (480)
T ss_pred c
Confidence 3
No 489
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=89.07 E-value=0.86 Score=37.94 Aligned_cols=48 Identities=25% Similarity=0.420 Sum_probs=40.6
Q ss_pred hHHhhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhh
Q 000936 652 NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRT 699 (1219)
Q Consensus 652 ~lal~~g~~~~A~~~a~~l-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~ 699 (1219)
...++.|+++.|.+..+.+ +++..|..+|..+..+|+++.|...|+++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3467889999999998874 45789999999999999999999999876
No 490
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.82 E-value=9.9 Score=47.19 Aligned_cols=142 Identities=16% Similarity=0.225 Sum_probs=91.8
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEE------Eec----------------ccCCCEEEEEEec--CCCEEEEEECCCeEE
Q 000936 21 RPWILASLHSGVIQLWDYRMGTLID------RFD----------------EHDGPVRGVHFHK--SQPLFVSGGDDYKIK 76 (1219)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~------~l~----------------~h~~~V~~l~fsp--~~~~Lasgs~Dg~I~ 76 (1219)
+.+++++. .+.|.||+...-.... .+. .....|+.|.... +...|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 67777764 7899999985432211 110 0112244444433 345889999999999
Q ss_pred EEEcCC-------C-------------eEEEEEccCCCCEEEEEEc--CCCCEEEEEECCCeEEEEECCCC--eE-EEEE
Q 000936 77 VWNYKM-------H-------------RCLFTLLGHLDYIRTVQFH--HEYPWIVSASDDQTIRIWNWQSR--TC-ISVL 131 (1219)
Q Consensus 77 vWd~~~-------~-------------~~~~~l~~h~~~I~~l~fs--~d~~~l~s~s~Dg~I~iwd~~s~--~~-i~~~ 131 (1219)
+|..++ . ++.+.+. ....+++++++ ...++||+++....|.||-.... +. ...-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 996521 0 0122222 34578999999 77888888888888888754331 11 1111
Q ss_pred ecCCCCeEEEEEecCC---C---EEEEEECCCeEEEEEC
Q 000936 132 TGHNHYVMCASFHPKE---D---LVVSASLDQTVRVWDI 164 (1219)
Q Consensus 132 ~~h~~~V~~l~~sp~~---~---~l~s~s~dg~I~vwd~ 164 (1219)
..|.+.|.+++|.++. . .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2367789999998754 2 7888899999999888
No 491
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.58 E-value=1.6 Score=49.45 Aligned_cols=195 Identities=12% Similarity=0.088 Sum_probs=108.5
Q ss_pred EEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCe
Q 000936 128 ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207 (1219)
Q Consensus 128 i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 207 (1219)
+..+......|..+-..|+|+.+..-+. .++.++++.+...... .+.....+. ....|
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r--------------kl~~dspg~-------~~~~V 270 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR--------------KLVDDSPGD-------SRHQV 270 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh--------------hhhhcCCCc-------hHHHH
Confidence 3334455567778889999998887765 6788888865322110 000000000 00011
Q ss_pred E-EEEEcCCCCEEEEEeCCCeEEEE-ECCCCCeee---EEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 000936 208 N-WAAFHPTLPLIVSGADDRQVKLW-RMNETKAWE---VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG 282 (1219)
Q Consensus 208 ~-~l~~sp~g~~l~sg~~dg~I~iw-d~~~~~~~~---~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~ 282 (1219)
+ .+..-..|..+.+++.||.|.-| |.+.+.... ++.+.-...++..+.-..+.+-+++-+..|++.++.....+.
T Consensus 271 te~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~ 350 (733)
T COG4590 271 TEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL 350 (733)
T ss_pred HHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc
Confidence 1 11112345567778888888777 333222111 112222223333333333445677788888888876443333
Q ss_pred EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeeEEEecCCcceEEecC--CEEEEE-eCCeEEEEEe
Q 000936 283 VQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSG--DSLFYA-KDRFLRYYEF 345 (1219)
Q Consensus 283 ~~~~~~~~~~i~~l~~sp~~~~la~g~d~gi~v~~l~~~~~~~s~~~--~~l~~~-~d~~i~v~d~ 345 (1219)
+ .+...-+.+..+++||.+.++.+-..+++.++.+++..|.++..+ +.+.|- .+.--++|.-
T Consensus 351 l-L~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~PeiswsaLWqkvWYEsYpePayVWQS 415 (733)
T COG4590 351 L-LFERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNPEISWSALWQKVWYESYPEPAYVWQS 415 (733)
T ss_pred e-ehhhhhcCcceeeeCcccchheeecCCceEEEEecCCCCCccHHHhhhhhhhhcCCCchheeec
Confidence 2 233333466788999999999999999999999998888665544 223332 4444555543
No 492
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.37 E-value=0.36 Score=55.20 Aligned_cols=138 Identities=9% Similarity=0.043 Sum_probs=86.3
Q ss_pred CCeEEEEccCCCEEEEEEeCCCCEEEEEEecCCCCCCCccccccccCceeEEEEEeCCe-EEEEEcCCCEEEEEecCCce
Q 000936 367 SPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNR-FAVLDKSSNQVLVKNLKNEV 445 (1219)
Q Consensus 367 ~i~~l~~spdg~~llv~~~~~dg~i~l~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~-~l~~~~~dg~I~Iwdl~~~~ 445 (1219)
.+-...|-|.+..+++++. +..+..|+-.++... -....+....++|.-++. .++.+...+.+.+|++..+-
T Consensus 36 ~pi~~~w~~e~~nlavaca--~tiv~~YD~agq~~l-----e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACA--NTIVIYYDKAGQVIL-----ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred ccceeeEecCCCceehhhh--hhHHHhhhhhcceec-----ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence 3444677788877777655 345555654433211 112233455677777764 45556667999999998655
Q ss_pred eEeeeCCc--ceEEEEEeCCCcEEEEe--CCeEEEEEcCCCeEEEEEe-c-CCeeEEEEcCCCCEEEEEeCC
Q 000936 446 VKKSILPI--AADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQ-T-PFVKYVVWSNDMESVALLSKH 511 (1219)
Q Consensus 446 ~~~i~~~~--~v~~l~~s~dg~~L~s~--d~~I~l~dl~~~~~l~~~~-~-~~v~~v~ws~dg~~la~~s~~ 511 (1219)
.+.+.... .-.-+.|++.+..++.+ .+.+.||...+.+.+.... . .++..++|.+.+..+......
T Consensus 109 tqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~ 180 (615)
T KOG2247|consen 109 TQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDN 180 (615)
T ss_pred HHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHH
Confidence 55544333 22235688888777775 5899999987766554443 2 568889999988765444443
No 493
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.29 E-value=23 Score=46.70 Aligned_cols=108 Identities=11% Similarity=0.219 Sum_probs=56.9
Q ss_pred CCEEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEecccC-CCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE
Q 000936 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHD-GPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (1219)
Q Consensus 10 ~~V~~i~fspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~-~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~ 88 (1219)
.....++|+|....+|.+..+|.|+++-...-+......... ..+..+.|-.......+...+..+.+|.......+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~- 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF- 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee-
Confidence 356678999999999999999999999854333332221111 122222232222233334445566666554322222
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000936 89 LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123 (1219)
Q Consensus 89 l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~ 123 (1219)
+...+++..-.+---+ .-+ ..+.+++||+.
T Consensus 115 ---~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~ 144 (993)
T KOG1983|consen 115 ---LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVL 144 (993)
T ss_pred ---cCCcceeccCCCCcch-hcc-cCceeeEeeec
Confidence 1222222222111124 445 78888888864
No 494
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.06 E-value=25 Score=41.12 Aligned_cols=98 Identities=11% Similarity=0.013 Sum_probs=58.4
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec
Q 000936 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG 133 (1219)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~~~~ 133 (1219)
|..+..++.|..++-.|.+|.+.++=.+....-..+......|.|=.|+-+. .+++.+
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss--------------------- 163 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSS--------------------- 163 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccC---------------------
Confidence 6667778889888888888866655433222223333333334443333222 122211
Q ss_pred CCCCeEEEEEecCC---CEEEEEECCCeEEEEECCCCcccccc
Q 000936 134 HNHYVMCASFHPKE---DLVVSASLDQTVRVWDIGALRKKTVS 173 (1219)
Q Consensus 134 h~~~V~~l~~sp~~---~~l~s~s~dg~I~vwd~~~~~~~~~~ 173 (1219)
..-.+..++|||+. ..++.-+.|.++|+||+...+.....
T Consensus 164 ~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 164 TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 11235567888876 57777888999999999887665433
No 495
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.95 E-value=4.1 Score=41.99 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHhCC----hhHHHHHHHHHHHcCChhHHHHHHHhhcCcc-----------hhhHHHHhcCCHHHHHHHHH
Q 000936 659 NIQIAVASAKEIDE----KDHWYRLGVEALRQGNAGIVEYAYQRTKNFE-----------RLSFLYLITGNMDKLSKMLK 723 (1219)
Q Consensus 659 ~~~~A~~~a~~l~~----~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~-----------~l~~l~~~~g~~~~l~kl~~ 723 (1219)
.++.-++.+++..- ...|..+|+.+.+-|+++.|.++|.++.++- .+.++.+..+|+..+.+-..
T Consensus 18 ~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ 97 (177)
T PF10602_consen 18 KLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIE 97 (177)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34444444443211 3468899999999999999999999987774 34555666777776554433
Q ss_pred HH----HHcCChhHH-------HHHHHhcCCHHHHHHHHHHcC
Q 000936 724 IA----EVKNDVMGQ-------FHNALYLGDVKERVKILESAG 755 (1219)
Q Consensus 724 ~~----~~~~~~~~~-------~~~al~lgd~~eai~i~~~~g 755 (1219)
.+ +..++.... .-..+..++|.+|.+.|+++.
T Consensus 98 ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 98 KAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 22 122222111 112445566666666666654
No 496
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.91 E-value=0.9 Score=36.13 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=26.2
Q ss_pred HHHhhchHHHHHHHHHHhccCCCchhHHHHHHHHH
Q 000936 1106 CFKNKNLATAGNFARRLLETNPTIESQSKTARQVL 1140 (1219)
Q Consensus 1106 ~~k~~n~~~a~~~a~~ll~~~~~~~~~~~~a~~~~ 1140 (1219)
.||.|||..|..++.+||++.|. ...+.+-++++
T Consensus 11 ~ykl~~Y~~A~~~~~~lL~~eP~-N~Qa~~L~~~i 44 (53)
T PF14853_consen 11 HYKLGEYEKARRYCDALLEIEPD-NRQAQSLKELI 44 (53)
T ss_dssp HHHTT-HHHHHHHHHHHHHHTTS--HHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhhCCC-cHHHHHHHHHH
Confidence 59999999999999999999998 55555555444
No 497
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.74 E-value=2.7 Score=44.66 Aligned_cols=103 Identities=18% Similarity=0.291 Sum_probs=74.1
Q ss_pred hhHhHHHHHhccCHHHHHHhhhc-------CcccchhHHHHHHhCCChhhhhcccc-----Ccch------hhhHHhhcC
Q 000936 597 TEYIFKLSLLRKRYDHVMSMIRN-------SQLCGQAMIAYLQQKGFPEVALHFVK-----DERT------RFNLALESG 658 (1219)
Q Consensus 597 ~e~~f~~~l~~~~~~~a~~~i~~-------~~~~~~~i~~~l~~~g~~e~Al~~~~-----d~~~------rf~lal~~g 658 (1219)
.|..|..++-.+..+.|...+.. +..++.--.-.|+.+|..+.|.+.+. ||.- +..+....|
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC
Confidence 45567788888888888766643 33333333336788888888877653 3321 344455567
Q ss_pred CHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhh
Q 000936 659 NIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRT 699 (1219)
Q Consensus 659 ~~~~A~~~a~~-----l~~~~~w~~La~~al~~g~~~~Ae~~y~~~ 699 (1219)
.--+|++...+ ..|.+.|..||+.++..|++..|..||..+
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 77677776643 688999999999999999999999999877
No 498
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=87.72 E-value=2.4 Score=48.58 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=36.6
Q ss_pred hCChhHHHHHHHHHHHcCChhHHHHHHHhh---cCcch-----hhHHHHhcCCHHHHH
Q 000936 670 IDEKDHWYRLGVEALRQGNAGIVEYAYQRT---KNFER-----LSFLYLITGNMDKLS 719 (1219)
Q Consensus 670 l~~~~~w~~La~~al~~g~~~~Ae~~y~~~---~d~~~-----l~~l~~~~g~~~~l~ 719 (1219)
-+|+.+|..||+-+.+.++.+.|++||.++ +|.++ |..||-..++.+++.
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 477899999999999999999999999887 55433 233344445555444
No 499
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=87.50 E-value=4.8 Score=39.91 Aligned_cols=101 Identities=22% Similarity=0.163 Sum_probs=0.0
Q ss_pred HhhcCCHHHHHHHHHHhCC--------hhHHHHHHHHHHHcCChhHHHHHHHhhcCcc-----------hhhHHHHhcCC
Q 000936 654 ALESGNIQIAVASAKEIDE--------KDHWYRLGVEALRQGNAGIVEYAYQRTKNFE-----------RLSFLYLITGN 714 (1219)
Q Consensus 654 al~~g~~~~A~~~a~~l~~--------~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~-----------~l~~l~~~~g~ 714 (1219)
++..++...+.+.+..+-. ...+-.+|..+..+|+++.|...|...-+-. +|.++++..|+
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 21 ALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Q ss_pred HHHHHHHHHHHHHcCChhHHHHH----HHhcCCHHHHHHHHHHc
Q 000936 715 MDKLSKMLKIAEVKNDVMGQFHN----ALYLGDVKERVKILESA 754 (1219)
Q Consensus 715 ~~~l~kl~~~~~~~~~~~~~~~~----al~lgd~~eai~i~~~~ 754 (1219)
++++.++.+......-....... ++..|+.++|+..|.++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
No 500
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.20 E-value=1.4 Score=49.78 Aligned_cols=236 Identities=11% Similarity=0.081 Sum_probs=127.5
Q ss_pred CCCEEEEEECCCeEEEEECCCC----eEEEEecccCCCEEEEEEecCCC--------EEEEEECCCeEEEEEcCC-----
Q 000936 20 KRPWILASLHSGVIQLWDYRMG----TLIDRFDEHDGPVRGVHFHKSQP--------LFVSGGDDYKIKVWNYKM----- 82 (1219)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g----~~i~~l~~h~~~V~~l~fsp~~~--------~Lasgs~Dg~I~vWd~~~----- 82 (1219)
-.++++.|.+||.+.+....-. ..-..|..... -++..+.|+ +....+.+....+++...
T Consensus 126 gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~~---p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L 202 (733)
T COG4590 126 GQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGLE---PLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQIL 202 (733)
T ss_pred CCceEEEeccCCeEEEEeccccccCCCCCccCCCCCC---ccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhh
Confidence 4679999999999998874311 01111211111 122222222 233333344444444321
Q ss_pred -------CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EE-ecCC----CCeE-EEEEecCCC
Q 000936 83 -------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS-VL-TGHN----HYVM-CASFHPKED 148 (1219)
Q Consensus 83 -------~~~~~~l~~h~~~I~~l~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~-~~-~~h~----~~V~-~l~~sp~~~ 148 (1219)
++.+..+......+..+-..||++++..-+. .++.++++.++.... .+ .... +.|+ .+.....|.
T Consensus 203 ~g~~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~ 281 (733)
T COG4590 203 RGDRTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGF 281 (733)
T ss_pred hcccCchhhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCce
Confidence 2223334445567788889999998887665 688899887654321 11 1111 1122 122233456
Q ss_pred EEEEEECCCeEEEE-ECCCCccccccCCccceeeccccccccccccceEEEEEeecCCCeEEEEEcCCCCEEEEEeCCCe
Q 000936 149 LVVSASLDQTVRVW-DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 227 (1219)
Q Consensus 149 ~l~s~s~dg~I~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~sp~g~~l~sg~~dg~ 227 (1219)
.+++++.||.|.-| |.+........ ....+.-....+..+.-..+.+-+++-+.+|+
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~p~l~----------------------h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~ 339 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQPHLN----------------------HIRNFKLAPAEVQFLLPETNRKGFYSLYRNGT 339 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCCCcce----------------------eeeccccCcccceeeccccccceEEEEcCCCc
Confidence 78888899998877 54432211100 00011111223333333334456777788888
Q ss_pred EEEEECCCCCeeeEEeecCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE
Q 000936 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT 285 (1219)
Q Consensus 228 I~iwd~~~~~~~~~~~~~~h~~~I~~l~~sp~g~~L~s~s~dg~I~iwdl~~~~~~~~ 285 (1219)
+..+.....+.. .+......+.-+.+||++.++++-. .|.|+++.+++..+..+
T Consensus 340 L~~f~st~~~~l---L~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~Peis 393 (733)
T COG4590 340 LQSFYSTSEKLL---LFERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRNPEIS 393 (733)
T ss_pred eeeeecccCcce---ehhhhhcCcceeeeCcccchheeec-CCceEEEEecCCCCCcc
Confidence 888776555532 1222223566789999999998764 46799999887655433
Done!