Query 000936
Match_columns 1219
No_of_seqs 1088 out of 3758
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 16:50:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000936.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_704-707//hhsearch_pdb/000936hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkr_B Coatomer subunit alpha; 1.0 1 1 854.0 31.6 316 901-1219 1-320 (320)
2 3mv2_A Coatomer subunit alpha; 1.0 1 1 825.2 29.4 307 905-1215 17-325 (325)
3 3mkq_A Coatomer beta'-subunit; 1.0 1 1 721.6 84.2 715 1-771 5-779 (814)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 473.7 57.0 502 3-521 609-1208(1249)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 467.4 71.6 515 3-540 10-560 (577)
6 1nr0_A Actin interacting prote 1.0 1 1 459.4 59.8 465 7-520 16-567 (611)
7 2ymu_A WD-40 repeat protein; u 1.0 1 1 445.6 67.7 467 2-517 50-577 (577)
8 1nr0_A Actin interacting prote 1.0 1 1 434.4 62.9 480 2-519 52-610 (611)
9 3mkq_A Coatomer beta'-subunit; 1.0 1 1 432.9 67.1 655 42-782 4-777 (814)
10 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 415.4 55.1 503 2-518 650-1247(1249)
No 1
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=1.00 E-value=1 Score=853.98 Aligned_cols=316 Identities=43% Similarity=0.744 Sum_probs=308.9
Q ss_pred CCEECCCCCCCCHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEEEECCCCCCCCHHHHHH
Q ss_conf 51004799999125787601008899870999999999976509444624589999987302020026788889135430
Q 000936 901 AVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHSGSHTYLRAFSSAPVIPLAVE 980 (1219)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~f~~a~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1219)
++||+|++|.++.+.|++||++|+||||||+||+||+|||||+|+|||+|||++|+++|.++++|+|++|++|||..|++
T Consensus 1 ~~~~~p~~g~~~~~~W~~nS~laadhvaAGsFe~A~~lLnrQ~Givnf~PLk~~F~~~y~~s~~~l~~~~~~p~l~~~~~ 80 (320)
T 3mkr_B 1 GFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPN 80 (320)
T ss_dssp CCCCCCCCCCCHHHHHHHHCCCHHHHHHTTCHHHHHHHHHHHSCBCCCGGGHHHHHHHHTTSCEEECSSTTSCCEEECCB
T ss_pred CCCCCCCCCCCHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHC
T ss_conf 97668999999889998758869999970689999999998738517556699999999987521357789974023421
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 27787899998899933346768999999998732148789999999999877462575384679999999999999998
Q 000936 981 RGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVL 1060 (1219)
Q Consensus 981 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 1060 (1219)
|||.++..++ .+|++++++++|.++||+|||+||+|||+||++.||++||.++|++|++++|++|++++|+||||||+
T Consensus 81 r~~~~~~~~~--~lP~i~~~l~~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYil 158 (320)
T 3mkr_B 81 RNWKDAGLKN--GVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIV 158 (320)
T ss_dssp TTTTTCCSSS--CCBCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 7842236545--78876668999999999999998657889999999999997450111668779999999999999999
Q ss_pred HHHHHHHHCCCCC---CC-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 8211653302899---82-2445998872026997225999999999799871126879999999750699944589999
Q 000936 1061 GLQLELKRRELKD---DP-VRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTA 1136 (1219)
Q Consensus 1061 ~~~~e~~r~~~~~---~~-~r~~el~~y~t~~~l~~~h~~l~l~~a~~~~~k~~n~~~a~~~a~~ll~~~~~~~~~~~~~ 1136 (1219)
||+||++||++++ ++ +|++|||||||||+|||.|++|+||+||+++||+|||+||++||||||+++|+ +++++||
T Consensus 159 al~iEl~Rr~l~~~~~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~-~~~~~qA 237 (320)
T 3mkr_B 159 GLSMETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK-PEVAQQT 237 (320)
T ss_dssp HHHHHHHHTTSCCCSHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC-HHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHH
T ss_conf 999999997436677304889999999866488748999999999999999860199999999999864999-8999999
Q ss_pred HHHHHHHHCCCCCCEEECCCCCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 99999974199995110378999915741564001499953228798963278888973476441000878767521478
Q 000936 1137 RQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPT 1216 (1219)
Q Consensus 1137 ~~~~~~~~~~~~~~~~~~~d~~~~~~~c~~~~~~i~~~~~~~~c~~c~~~~~~~~~~~~c~~c~~~~ig~~~~gl~~~~~ 1216 (1219)
|||+++|||+|+|+++||||++|||+||++||||||+|+|.|+||||||+|+|+|||++|+||+||+||++++|||+++.
T Consensus 238 rkil~~ce~~~~da~eidyD~~~~f~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~kG~lC~vC~l~~IG~~~~GL~~~~~ 317 (320)
T 3mkr_B 238 RKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKVTTVTEIGKDVIGLRISPL 317 (320)
T ss_dssp HHHHHHHHHSCCBSSCCSCCTTSCCCBBTTTCCBCCTTSCCEECTTTCCEECGGGTTSBCTTTSSBBSSCCCCCCCCSGG
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEECHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999984689876314788878630214777656699987037898886366348998887857402876337243512
Q ss_pred CCC
Q ss_conf 779
Q 000936 1217 QIR 1219 (1219)
Q Consensus 1217 ~~~ 1219 (1219)
|||
T Consensus 318 ~~~ 320 (320)
T 3mkr_B 318 QFR 320 (320)
T ss_dssp GCC
T ss_pred CCC
T ss_conf 259
No 2
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=1.00 E-value=1 Score=825.15 Aligned_cols=307 Identities=31% Similarity=0.453 Sum_probs=297.0
Q ss_pred CCCCCCCCHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEEEECCCC-CCCCHHHHHHCCC
Q ss_conf 479999912578760100889987099999999997650944462458999998730202002678-8889135430277
Q 000936 905 APTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHSGSHTYLRAFS-SAPVIPLAVERGW 983 (1219)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~g~f~~a~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 983 (1219)
.-..|.++.+.|++||++|+||||||+||+||+|||||+|+|||+|||++|+++|.++++|+|++| ++|||..|++|+|
T Consensus 17 ~~~~~~~~~~~W~~nS~laadhvAAGsFetAm~lLnrQvGivnf~PLk~~F~~~y~~s~~~l~~~~~~lp~l~~~~~r~~ 96 (325)
T 3mv2_A 17 LFQGPHMETAIWIKNSKLPAVLVAAGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYD 96 (325)
T ss_dssp ----CCHHHHHHHHHCCSHHHHHHTTCHHHHHHHHHHHHCBCCCGGGHHHHHHHHHHTEEEECCSSTTSCCEEEECBSSC
T ss_pred EEECCCCHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCC
T ss_conf 32089947899987488699999706899999999987385175566999999999886203667777876125530774
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87899998899933346768999999998732148789999999999877462575384679999999999999998821
Q 000936 984 NESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQ 1063 (1219)
Q Consensus 984 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 1063 (1219)
.+.+.++ .+|+++ ++++|.++||+|||+||+|||+||++.||++||.++|++|++++|++|++++|+||||||+||+
T Consensus 97 ~e~~~~~--~lP~i~-~l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~ 173 (325)
T 3mv2_A 97 DTVSEDQ--ILPYVP-GLDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLS 173 (325)
T ss_dssp SSSCGGG--CCBCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCC--CCCCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2236546--788878-8999999999999998658889999999999997530221667779999999999999999998
Q ss_pred HHHHHCCCCCCC-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 165330289982-2445998872026997225999999999799871126879999999750699944589999999999
Q 000936 1064 LELKRRELKDDP-VRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQA 1142 (1219)
Q Consensus 1064 ~e~~r~~~~~~~-~r~~el~~y~t~~~l~~~h~~l~l~~a~~~~~k~~n~~~a~~~a~~ll~~~~~~~~~~~~~~~~~~~ 1142 (1219)
||++||++++++ +|++|||||||||+|||.|++|+||+||+++||+|||+||++||||||+++|+ +++++|||||+++
T Consensus 174 iEl~Rr~l~~~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~-~~~a~qArkil~~ 252 (325)
T 3mv2_A 174 IELERRSLKEGNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS-GPRAEQARKIKNK 252 (325)
T ss_dssp HHHHHHTCCTTCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS-SHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHH
T ss_conf 999987327542778999999866488748999999999999999860099999999999865899-8999999999999
Q ss_pred HHCCCCCCEEECCCCCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC
Q ss_conf 7419999511037899991574156400149995322879896327888897347644100087876752147
Q 000936 1143 AERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSP 1215 (1219)
Q Consensus 1143 ~~~~~~~~~~~~~d~~~~~~~c~~~~~~i~~~~~~~~c~~c~~~~~~~~~~~~c~~c~~~~ig~~~~gl~~~~ 1215 (1219)
|||+|+|+++||||++|||+||++||||||||+|.|+||||||+|+|+|||++|+||+||+||++++|||+..
T Consensus 253 ce~~~~Da~eidyD~~~~F~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~kG~lC~vC~l~~IG~~a~GL~~~~ 325 (325)
T 3mv2_A 253 ADSMASDAIPIDFDPYAKFDICAATYKPIYEDTPSVSDPLTGSKYVITEKDKIDRIAMISKIGAPASGLRIRV 325 (325)
T ss_dssp HHTSCCCSSCCSCCTTSCEEECTTTCCEEESSSCEEECTTTCCEEEGGGTTSBCSSSSCBBTTCCCCCCCCBC
T ss_pred HHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECHHHCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 8468987532688888873153477502569998703788888625634899888785742188763504309
No 3
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=721.57 Aligned_cols=715 Identities=25% Similarity=0.460 Sum_probs=618.9
Q ss_pred CCCEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 95051136888899999189999999977990999988989189996255779799999549999999978982999986
Q 000936 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1219)
Q Consensus 1 ml~~l~~h~~~V~~i~fspd~~~Lasg~~dg~I~iwd~~~g~~i~~l~~h~~~V~~i~fsp~~~~Lvsgs~Dg~I~vWd~ 80 (1219)
+.++|++|++.|++++|||++++|++++.+|.|++||+.+++.+..+.+|.++|++++|+|++++|++++.||.|++|++
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred CCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 00045058985689998899998999947998999989999167787338996889999689998999928994999989
Q ss_pred CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC-EEEEEEECCCCCEEEEEEEC-CCCEEEEEECCCE
Q ss_conf 999599998169998799999179999999979990999979998-48999706898749999914-9998999979990
Q 000936 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHP-KEDLVVSASLDQT 158 (1219)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~i~fs~d~~~l~s~s~dg~I~iwd~~s~-~~i~~~~~h~~~V~~l~~sp-~~~~lvs~s~dg~ 158 (1219)
.+++.+.++.+|.+.|++++|+|+++++++++.||.|++|++.++ .....+.+|...|.+++|+| +++.+++++.||.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 164 (814)
T 3mkq_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (814)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCE
T ss_conf 99958799816899789999958999899992899899998999954879983799868899997699999999948894
Q ss_pred EEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEEECC--CCCEEEEEECCCEEEEEECCCC
Q ss_conf 99998899842112688650342046544325523459999830589838999959--9989999967990999987999
Q 000936 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP--TLPLIVSGADDRQVKLWRMNET 236 (1219)
Q Consensus 159 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~sp--~g~~lvsg~~dg~I~iwd~~~~ 236 (1219)
|++||+.+..... .....+...+.+++|+| +++++++++.||.|++|++.++
T Consensus 165 v~vwd~~~~~~~~--------------------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 218 (814)
T 3mkq_A 165 VKVWSLGQSTPNF--------------------------TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (814)
T ss_dssp EEEEETTCSSCSE--------------------------EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred EEEEECCCCCCEE--------------------------EEECCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCC
T ss_conf 9999899996106--------------------------98358889779999997799989999938997999999999
Q ss_pred CEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCC--EEEEEECCCEE
Q ss_conf 7246876438888859999935999999995898199996899904899843799779999948998--99999689826
Q 000936 237 KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMN--LLAAGHDSGMI 314 (1219)
Q Consensus 237 ~~~~i~~~~~h~~~I~~i~~sp~g~~L~s~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~i~~spd~~--~la~g~~~g~~ 314 (1219)
.. +..+.+|...++++.|+|++.++++++.||.|++||+.++.....+..+...+++++|+|++. +++++.++++.
T Consensus 219 ~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 296 (814)
T 3mkq_A 219 SC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFT 296 (814)
T ss_dssp EE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEE
T ss_pred CE--EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCEE
T ss_conf 18--8998478888789998599999999908996999989999477784068886799999249995099999079879
Q ss_pred EEEECCCCCEEEEC--CCEEEEE-ECC---EEEE------EEECCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCEEEE
Q ss_conf 89746984068753--9999999-488---3999------9901895011376148999888878819997169998999
Q 000936 315 VFKLERERPAFAVS--GDSLFYA-KDR---FLRY------YEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLI 382 (1219)
Q Consensus 315 v~~l~~~~~~~s~~--~~~l~~~-~d~---~i~i------~d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~spdg~~llv 382 (1219)
+|++....+....+ +..++.. .+. .+.. |+...+............+ ...+.+++|+|+|+.+++
T Consensus 297 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~la~ 373 (814)
T 3mkq_A 297 VLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSV---DVFPQSLAHSPNGRFVTV 373 (814)
T ss_dssp EEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCC---SSCCSEEEECTTSSEEEE
T ss_pred EEECCCCCCEEEECCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCC---CCCCCEEEECCCCCEEEE
T ss_conf 99767997416777998789977636641124665304655555676201465117887---657740689999998999
Q ss_pred EEECCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEECCCCEEEEEECCC-CEEEEEEE
Q ss_conf 99079978999990499889886334554571469999848809999838997999956883367540796-54799991
Q 000936 383 CSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPI-AADAIFYA 461 (1219)
Q Consensus 383 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~lv~~~~dg~I~Iwdl~~~~~~~i~~~~-~v~~i~~s 461 (1219)
++ ++.+.+|++... ...+.+.+.+++|+|+++++++++.++.|.+|+.- ..+. .+..+.|+
T Consensus 374 ~~---~~~~~i~~~~~~--------~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~-------~~~~~~v~~~~~s 435 (814)
T 3mkq_A 374 VG---DGEYVIYTALAW--------RNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNF-------KEVTSWSVPMHSA 435 (814)
T ss_dssp EE---TTEEEEEETTTT--------EEEEEEECSEEEECTTSSCEEEECTTCCEEEEETT-------EECTTCCCCCSSC
T ss_pred EC---CCEEEEEECCCC--------CCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECC-------CCCCCEEECCCCC
T ss_conf 42---988999987454--------45679954799994799859999689839999777-------7752439737867
Q ss_pred CCC----CEEE-EECCEEEEEECCCCEEEEEEECCCEEEEEECCCCCEEEEE------ECCEEEEEECC-----------
Q ss_conf 797----5899-9499599987698818999846985599996798799998------38849999158-----------
Q 000936 462 GTG----NLLC-RAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALL------SKHAIIIASKK----------- 519 (1219)
Q Consensus 462 ~dg----~~L~-s~d~~I~i~di~~~~~i~~~~~~~v~~v~ws~dg~~la~~------s~~~i~i~~~~----------- 519 (1219)
|+| .++. ..++.|++||+.+++.+..+.... ..+.|++||+++++. +++.++++..+
T Consensus 436 ~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (814)
T 3mkq_A 436 IDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNA-KDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNG 514 (814)
T ss_dssp CCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCE-EEEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHT
T ss_pred CCCEECCEEEEEECCCEEEEEECCCCCEEEEEECCC-CEEEECCCCCEEEEEECCCCCCCCEEEEEEECHHHHHHHHHCC
T ss_conf 552365469999669989999987695999973588-8799969999999998676667742899995468866666416
Q ss_pred -----------CCCEEEEEEEEEEEEEEEECCCEEEEEC-CCEEEEEECCCCEEEEEECCCCEEEEE--EECCEEEEEEC
Q ss_conf -----------6530342001577642890489499974-780347822894359996110179998--92778999826
Q 000936 520 -----------LVHQCTLHETIRVKSGAWDDNGVFIYTT-LNHIKYCLPNGDSGIIRTLDVPIYITK--VSGNTIFCLDR 585 (1219)
Q Consensus 520 -----------l~~~~~~~e~~~iks~~wd~~~~~iytt-~~~i~y~l~~~~~~~i~~~~~~~~l~~--~~~~~~~~l~~ 585 (1219)
++.++.+. ..++++.|+ .++++|++ .+++.|+ .+++.+.+..++.++++++ ..+++++++++
T Consensus 515 ~~~~~~~~~~~~~~~~~~~--~~i~s~~w~-~~~~i~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 590 (814)
T 3mkq_A 515 NIDDSEGVDEAFDVLYELS--ESITSGKWV-GDVFIFTTATNRLNYF-VGGKTYNLAHYTKEMYLLGYLARDNKVYLADR 590 (814)
T ss_dssp CCBTTTBCTTTEEEEEEEC--SCCSEEEEE-TTEEEEECTTSEEEEE-ETTEEEEEEECSSCCEEEEEEGGGTEEEEECT
T ss_pred CCCCCCCHHHHEEEEEEEC--CEEEEEEEE-CCEEEEECCCCEEEEE-ECCEEEEEEECCCCEEEEEEEECCCEEEEECC
T ss_conf 8762125022213645764--278765980-8889997688708999-69866899998966799999832999999928
Q ss_pred CCCEEEEEECCHHHHHHHHHHCCCHHHHHH-HH---H-CCCCCCHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCH
Q ss_conf 996599993812676789875147999997-66---1-386341169999995897055302345733024677612999
Q 000936 586 DGKNRAIVIDATEYIFKLSLLRKRYDHVMS-MI---R-NSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI 660 (1219)
Q Consensus 586 ~~~~~~~~ld~~e~~f~~~l~~~~~~~a~~-~~---~-~~~~~~~~i~~~l~~~g~~e~Al~~~~d~~~rF~lal~~g~~ 660 (1219)
++.+....++..++.|+.++..+++++|.+ ++ + .... +.++.|++++|++|.|+++++|+.++|++++++|+|
T Consensus 591 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~--~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 591 EVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSL--TKIARFLEGQEYYEEALNISPDQDQKFELALKVGQL 668 (814)
T ss_dssp TCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHH--HHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCH
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHH--HHHHHHHHHCCCHHHHEECCCCCCHHEEHHHHCCCH
T ss_conf 888799998909999969987079999998887428846789--999999986898689605278931425021450999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999809866999999999983894289999986127541367897419989999999999982981578889985
Q 000936 661 QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALY 740 (1219)
Q Consensus 661 ~~A~~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~~l~kl~~~~~~~~~~~~~~~~al~ 740 (1219)
++|+++++.++++..|++||++|+++|++++|++||++++|++++.+||..+|+.+++.+++++++.+++...+++++++
T Consensus 669 ~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~ 748 (814)
T 3mkq_A 669 TLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWI 748 (814)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999998617676899999999984998999999987027135589987729999999999999985866799999988
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHCCCHH
Q ss_conf 2999999999998399758899998319958
Q 000936 741 LGDVKERVKILESAGHLPLAYITASVHGLQD 771 (1219)
Q Consensus 741 lgd~~eai~i~~~~g~~~lA~~la~~~g~~~ 771 (1219)
+|++++|+++|+++++|++|+.+|++|++++
T Consensus 749 ~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 749 AGDIQGAKDLLIKSQRFSEAAFLGSTYGLGD 779 (814)
T ss_dssp HTCHHHHHHHHHHTTCHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHHCCCH
T ss_conf 0999999999998699478999998709975
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=473.65 Aligned_cols=502 Identities=17% Similarity=0.278 Sum_probs=360.4
Q ss_pred CEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 05113688889999918999999997799099998898918999625577979999954999999997898299998699
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspd~~~Lasg~~dg~I~iwd~~~g~~i~~l~~h~~~V~~i~fsp~~~~Lvsgs~Dg~I~vWd~~~ 82 (1219)
..+.+|.+.|++++|+|+++++++++.||.|++||..+++.+..+.+|.+.|++++|+|+++++++++.|+.|++||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC
T ss_conf 78716666489999879999899994889499999899978887606777789999926999899981899599987799
Q ss_pred CEEEEEECCCCCCEEEEEECC--CCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 959999816999879999917--999999997999099997999848999706898749999914999899997999099
Q 000936 83 HRCLFTLLGHLDYIRTVQFHH--EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1219)
Q Consensus 83 ~~~~~~l~~h~~~I~~i~fs~--d~~~l~s~s~dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~lvs~s~dg~I~ 160 (1219)
++++.++.+|...|.+++|++ ++.++++++.|+.|++||+.+++++..+.+|...|.+++|+|+++.+++++.||.|+
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~ 768 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEE
T ss_pred CCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCCEEEEEEECCCCEEEEEECCCEEE
T ss_conf 93689995899737999984089965999980897099998999634220127779788999925999899997898599
Q ss_pred EEECCCCCCCCCCCCCC-----------------CEEECCCCC----------CCCCCCCCE-EEEEEEECCCCEEEEEE
Q ss_conf 99889984211268865-----------------034204654----------432552345-99998305898389999
Q 000936 161 VWDIGALRKKTVSPADD-----------------ILRLSQMNT----------DLFGGVDAV-VKYVLEGHDRGVNWAAF 212 (1219)
Q Consensus 161 vwd~~~~~~~~~~~~~~-----------------~~~~~~~~~----------~~~~~~~~~-~~~~~~~~~~~V~~i~~ 212 (1219)
+||+.+.+......... .+.+...+. .++...... ......+|...+.+++|
T Consensus 769 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~ 848 (1249)
T 3sfz_A 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF 848 (1249)
T ss_dssp EEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEE
T ss_pred EEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEECCCCCCCEEEEEE
T ss_conf 99688886553020232102467764456501799999789988999758959999956897235774787776079998
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEE----------
Q ss_conf 5999899999679909999879997246876438888859999935999999995898199996899904----------
Q 000936 213 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG---------- 282 (1219)
Q Consensus 213 sp~g~~lvsg~~dg~I~iwd~~~~~~~~i~~~~~h~~~I~~i~~sp~g~~L~s~s~dg~I~iwd~~~~~~---------- 282 (1219)
+|+++.+++++.||.|++|++.+... +..+.+|...|+++.|+|++.++++++.||.|++|++.+...
T Consensus 849 sp~~~~l~~~~~dg~v~vwd~~~~~~--~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 926 (1249)
T 3sfz_A 849 SPYDHLAVIALSQYCVELWNIDSRLK--VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 926 (1249)
T ss_dssp CSSTTEEEEECSSSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCE--EEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEE
T ss_conf 27888899994798699998678956--5322787665689999899998999958972898874665201021133103
Q ss_pred -------------------EEE--------EECCCCCEEEEEEECCCCEEEEEECC-CEEEEEECCCCC-----------
Q ss_conf -------------------899--------84379977999994899899999689-826897469840-----------
Q 000936 283 -------------------VQT--------FRREHDRFWILASHPEMNLLAAGHDS-GMIVFKLERERP----------- 323 (1219)
Q Consensus 283 -------------------~~~--------~~~~~~~i~~i~~spd~~~la~g~~~-g~~v~~l~~~~~----------- 323 (1219)
... .......+.+++++|++.++++|+.+ .+.+|++.....
T Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A 927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred EEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCCCCCCE
T ss_conf 68975998689981377624898447650897256727899995899779998699988999757872344303677716
Q ss_pred ---EEEECCCEEEEE-ECCEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCC
Q ss_conf ---687539999999-4883999990189501137614899988887881999716999899999079978999990499
Q 000936 324 ---AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (1219)
Q Consensus 324 ---~~s~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~spdg~~llv~~~~~dg~i~i~~~~~~ 399 (1219)
.+++++..++++ .++.+++|++.+++... .. ++ ...+.++.|+|++. ++++ + .++.+.+|++...
T Consensus 1007 ~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~---~~--~~---~~~v~~~~~~~~~~-l~~~-~-~dg~v~vwd~~~~ 1075 (1249)
T 3sfz_A 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF---LQ--AH---QETVKDFRLLQDSR-LLSW-S-FDGTVKVWNVITG 1075 (1249)
T ss_dssp CCEEECSSSSCEEEECSSSBEEEEETTTTEEEC---CB--CC---SSCEEEEEECSSSE-EEEE-E-SSSEEEEEETTTT
T ss_pred EEEEECCCCCEEEEECCCCEEEEEECCCCCEEE---EE--CC---CCCEEEEEECCCCC-EEEE-E-CCCCEEEEECCCC
T ss_conf 899998999989998699879999879996689---85--27---87389999908995-8999-7-8896899888988
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEECC-CCEEEEEECCC-CEEEEEEECCCCEEEEE--CCEEE
Q ss_conf 8898863345545714699998488099998389979999568-83367540796-54799991797589994--99599
Q 000936 400 SIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPI-AADAIFYAGTGNLLCRA--EDRVV 475 (1219)
Q Consensus 400 ~~~~~~~~~~~~~~~i~~~~fs~d~~~lv~~~~dg~I~Iwdl~-~~~~~~i~~~~-~v~~i~~s~dg~~L~s~--d~~I~ 475 (1219)
.....+.+|.+.+.+++|+++++++++++.|+.|++|++. +.....+..|. .|.++.|+|+|++++++ |+.|+
T Consensus 1076 ---~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~ 1152 (1249)
T 3sfz_A 1076 ---RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIR 1152 (1249)
T ss_dssp ---CCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCC
T ss_pred ---CEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf ---65588746688489999989999899984999489987898500125506877679999979999899982899799
Q ss_pred EEECCCCEEEEEE-----------ECCCEEEEEECCCCCEEEEEECCEEEEEECCCC
Q ss_conf 9876988189998-----------469855999967987999983884999915865
Q 000936 476 IFDLQQRLVLGDL-----------QTPFVKYVVWSNDMESVALLSKHAIIIASKKLV 521 (1219)
Q Consensus 476 i~di~~~~~i~~~-----------~~~~v~~v~ws~dg~~la~~s~~~i~i~~~~l~ 521 (1219)
+||+.+++.+..+ ....+..+.|++|++++++++ ..+.+|+....
T Consensus 1153 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1153 IWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWNVATG 1208 (1249)
T ss_dssp EEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-SSEEEBCSSSC
T ss_pred EEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECC-CEEEEEECCCC
T ss_conf 998899945788514444421025674289999978999899779-85999898889
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=467.44 Aligned_cols=515 Identities=24% Similarity=0.377 Sum_probs=388.6
Q ss_pred CEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 05113688889999918999999997799099998898918999625577979999954999999997898299998699
Q 000936 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1219)
Q Consensus 3 ~~l~~h~~~V~~i~fspd~~~Lasg~~dg~I~iwd~~~g~~i~~l~~h~~~V~~i~fsp~~~~Lvsgs~Dg~I~vWd~~~ 82 (1219)
++|+||++.|++++|||||++|++++.|+.|+||| .+++.+.++.+|.+.|++++|+|++++|++++.|+.|++||. +
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~ 87 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-N 87 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-T
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE-CCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-C
T ss_conf 39878998579999989989999993899899997-999789999689899899999899999999969897999989-9
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 95999981699987999991799999999799909999799984899970689874999991499989999799909999
Q 000936 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1219)
Q Consensus 83 ~~~~~~l~~h~~~I~~i~fs~d~~~l~s~s~dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~lvs~s~dg~I~vw 162 (1219)
++++.++.+|...|.+++|+|+++++++++.|+.+++|+.... ......++...+.++.++|++..+++++.++.+++|
T Consensus 88 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 166 (577)
T 2ymu_A 88 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 166 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCC-EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCC-EEEECCCCCCCEEEEEEECCCCCCEECCCCCCEECC
T ss_conf 9789999789998899999899998999807983352023552-001104777743555420377632002555310000
Q ss_pred ECCCCCCCCCCCCCCCE---EECCC----------CC-CCCCCCCCEEEEEEEECCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 88998421126886503---42046----------54-432552345999983058983899995999899999679909
Q 000936 163 DIGALRKKTVSPADDIL---RLSQM----------NT-DLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 228 (1219)
Q Consensus 163 d~~~~~~~~~~~~~~~~---~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~V~~i~~sp~g~~lvsg~~dg~I 228 (1219)
+...............+ ..... +. .++. .+......+.+|...|.+++|+|++.++++++.|+.|
T Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i 245 (577)
T 2ymu_A 167 NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 245 (577)
T ss_dssp CTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred CCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEE-CCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEE
T ss_conf 000000000268776356654169977899985999899994-9996899994688988999997999999999189989
Q ss_pred EEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEE
Q ss_conf 99987999724687643888885999993599999999589819999689990489984379977999994899899999
Q 000936 229 KLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308 (1219)
Q Consensus 229 ~iwd~~~~~~~~i~~~~~h~~~I~~i~~sp~g~~L~s~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~i~~spd~~~la~g 308 (1219)
++|+.... . +..+.+|...|.++.|+|++..+++++.|+.|++|+. +++....+..|...+++++++|++..++++
T Consensus 246 ~~w~~~~~-~--~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 246 KLWNRNGQ-L--LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASA 321 (577)
T ss_dssp EEECTTSC-E--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCC-E--EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEE
T ss_conf 99959997-9--9998068898799999689999999959997999948-995899970688976999999999999999
Q ss_pred ECC-CEEEEEECCCCC-------------EEEECCCEEEEE-ECCEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEE
Q ss_conf 689-826897469840-------------687539999999-48839999901895011376148999888878819997
Q 000936 309 HDS-GMIVFKLERERP-------------AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSY 373 (1219)
Q Consensus 309 ~~~-g~~v~~l~~~~~-------------~~s~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 373 (1219)
+.+ .+.+|+...... .+++++..++++ .++.+++|+.. ++.. ..+..+. . .+++++|
T Consensus 322 ~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~--~~~~~~~--~---~v~~~~~ 393 (577)
T 2ymu_A 322 SDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLL--QTLTGHS--S---SVRGVAF 393 (577)
T ss_dssp ETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEE--EEEECCS--S---CEEEEEE
T ss_pred ECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEECCC-CCEE--EEECCCC--C---CEEEEEE
T ss_conf 69995999969997257874788977999998999999999699989999089-9789--9852788--9---7489999
Q ss_pred CCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEECCCCEEEEEECCC
Q ss_conf 16999899999079978999990499889886334554571469999848809999838997999956883367540796
Q 000936 374 SPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPI 453 (1219)
Q Consensus 374 spdg~~llv~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~lv~~~~dg~I~Iwdl~~~~~~~i~~~~ 453 (1219)
+|+++++++++ .++.+++|+... .....+.+|...+.+++|+|+++++++++.|+.|++|+..++....+..|.
T Consensus 394 s~dg~~l~~~~--~d~~v~~~~~~~----~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~ 467 (577)
T 2ymu_A 394 SPDGQTIASAS--DDKTVKLWNRNG----QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHS 467 (577)
T ss_dssp CTTSSCEEEEE--TTSEEEEECTTC----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCS
T ss_pred CCCCCEEEEEE--CCCEEEEEECCC----CEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCC
T ss_conf 89999999994--999899996999----789896288997579999899999999939998999979998899972789
Q ss_pred -CEEEEEEECCCCEEEEE--CCEEEEEECCCCEEEEEEEC--CCEEEEEECCCCCEEEEEECCE-EEEEECCCCCEEEEE
Q ss_conf -54799991797589994--99599987698818999846--9855999967987999983884-999915865303420
Q 000936 454 -AADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMESVALLSKHA-IIIASKKLVHQCTLH 527 (1219)
Q Consensus 454 -~v~~i~~s~dg~~L~s~--d~~I~i~di~~~~~i~~~~~--~~v~~v~ws~dg~~la~~s~~~-i~i~~~~l~~~~~~~ 527 (1219)
.+..++|+|++++|+++ |+.|++||. +++.+..+.. ..|..+.|+||+++|++++.++ +.+|+...+.+..+.
T Consensus 468 ~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~ 546 (577)
T 2ymu_A 468 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 546 (577)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEC
T ss_conf 97789999699999999919897999939-99789998679999899999189999999989699999969997898971
Q ss_pred E-EEEEEEEEEECC
Q ss_conf 0-157764289048
Q 000936 528 E-TIRVKSGAWDDN 540 (1219)
Q Consensus 528 e-~~~iks~~wd~~ 540 (1219)
. ...|.+..|..+
T Consensus 547 ~h~~~v~~~~fs~d 560 (577)
T 2ymu_A 547 GHSSSVWGVAFSPD 560 (577)
T ss_dssp CCSSCEEEEEECTT
T ss_pred CCCCCEEEEEECCC
T ss_conf 88888789999689
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=459.44 Aligned_cols=465 Identities=16% Similarity=0.192 Sum_probs=274.0
Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC--CE
Q ss_conf 3688889999918999999997799099998898918999625577979999954999999997898299998699--95
Q 000936 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM--HR 84 (1219)
Q Consensus 7 ~h~~~V~~i~fspd~~~Lasg~~dg~I~iwd~~~g~~i~~l~~h~~~V~~i~fsp~~~~Lvsgs~Dg~I~vWd~~~--~~ 84 (1219)
.+.+.+.+++|+|+|++|++++ ++.|++|++.+++....+.+|...|++++|+|++++|++|+.|+.|++||+.+ ..
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~ 94 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 94 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCEEEEEECCCCCEEEECC-CCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCE
T ss_conf 4068236976679999799679-997999457872427376589986599999999968999948997899489898415
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECC----CEEEEEECCCCEEEEEEECCCCCEEEEEEECCCC-EEEEEECCCEE
Q ss_conf 999981699987999991799999999799----9099997999848999706898749999914999-89999799909
Q 000936 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDD----QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVVSASLDQTV 159 (1219)
Q Consensus 85 ~~~~l~~h~~~I~~i~fs~d~~~l~s~s~d----g~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~-~lvs~s~dg~I 159 (1219)
...++.+|.+.|.+++|+|+++++++++.+ +.|++|| .++....+.+|...|.+++|+|++. .+++++.|++|
T Consensus 95 ~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v 172 (611)
T 1nr0_A 95 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 172 (611)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEE--CCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEE
T ss_conf 66762255784489998999997999989977366999963--8997632547889836999889998299999289809
Q ss_pred EEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 99988998421126886503420465443255234599998305898389999599989999967990999987999724
Q 000936 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (1219)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~sp~g~~lvsg~~dg~I~iwd~~~~~~~ 239 (1219)
++||....+ ....+.+|...|.+++|+|+++++++++.|+.|++|+..+++.
T Consensus 173 ~lwd~~~~~---------------------------~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~- 224 (611)
T 1nr0_A 173 AIFEGPPFK---------------------------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK- 224 (611)
T ss_dssp EEEETTTBE---------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-
T ss_pred EEEECCCCE---------------------------EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-
T ss_conf 999799975---------------------------7665200257169999979999899998999199988999828-
Q ss_pred EEEEEC-------CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEE--------------------------
Q ss_conf 687643-------88888599999359999999958981999968999048998--------------------------
Q 000936 240 EVDTLR-------GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF-------------------------- 286 (1219)
Q Consensus 240 ~i~~~~-------~h~~~I~~i~~sp~g~~L~s~s~dg~I~iwd~~~~~~~~~~-------------------------- 286 (1219)
...+. +|...|.+++|+|++++|++++.|++|++||+.+++.+.++
T Consensus 225 -~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 303 (611)
T 1nr0_A 225 -TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 303 (611)
T ss_dssp -EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred -EEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECC
T ss_conf -6651366432356678789999979999999990898099996888701344047887664068999738879999589
Q ss_pred -----------------ECCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCCC---------------EEEECCCEEE
Q ss_conf -----------------43799779999948998999996-89826897469840---------------6875399999
Q 000936 287 -----------------RREHDRFWILASHPEMNLLAAGH-DSGMIVFKLERERP---------------AFAVSGDSLF 333 (1219)
Q Consensus 287 -----------------~~~~~~i~~i~~spd~~~la~g~-~~g~~v~~l~~~~~---------------~~s~~~~~l~ 333 (1219)
..|...+++++|+|+++++++++ ++.+.+|++..... .++ .+..++
T Consensus 304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~ 382 (611)
T 1nr0_A 304 GFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT-SKGDLF 382 (611)
T ss_dssp CCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC-TTSCEE
T ss_pred CCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEEEEC-CCCCEE
T ss_conf 9689996889974469837888889999918999899995898499997887925632166776507899987-899699
Q ss_pred EE-ECCEEEEEEECCCCCEEEE--EECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 99-4883999990189501137--61489998888788199971699989999907997899999049988988633455
Q 000936 334 YA-KDRFLRYYEFSTQKDTQVI--PIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDA 410 (1219)
Q Consensus 334 ~~-~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~i~~i~~spdg~~llv~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 410 (1219)
.+ .++.+++|+..++...... ... . ...+..++++|++..+++... +.+.+|+.. .. ....
T Consensus 383 s~s~d~~v~~w~~~~~~~~~~~~~~~~-~-----~~~~~~~~~s~dg~~~~~~~~---~~v~~~~~~-----~~--~~~~ 446 (611)
T 1nr0_A 383 TVSWDDHLKVVPAGGSGVDSSKAVANK-L-----SSQPLGLAVSADGDIAVAACY---KHIAIYSHG-----KL--TEVP 446 (611)
T ss_dssp EEETTTEEEEECSSSSSSCTTSCCEEE-C-----SSCEEEEEECTTSSCEEEEES---SEEEEEETT-----EE--EEEE
T ss_pred EEECCCCEEEEECCCCCCCCCCEEEEE-C-----CCCCCEEEEECCCCEEEEEEC---CEEEEEECC-----CE--EEEE
T ss_conf 998489668954688543565212001-4-----899707998079969999967---639998489-----43--4640
Q ss_pred CCCCEEEEEEEECCEEEEEECCCCEEEEEECCCCEE---EEEECCCCEEEEEEECCCCEEEEE--CCEEEEEECCC-CEE
Q ss_conf 457146999984880999983899799995688336---754079654799991797589994--99599987698-818
Q 000936 411 KKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVV---KKSILPIAADAIFYAGTGNLLCRA--EDRVVIFDLQQ-RLV 484 (1219)
Q Consensus 411 ~~~~i~~~~fs~d~~~lv~~~~dg~I~Iwdl~~~~~---~~i~~~~~v~~i~~s~dg~~L~s~--d~~I~i~di~~-~~~ 484 (1219)
+...+.+++|+|+++++++++.|++|++|++.+... ....+...|.+++|+|+|++|+++ |+.+++|++.+ ++.
T Consensus 447 ~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 447 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred CCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCE
T ss_conf 68895499992899899996899739999945992224101577886079999899998999948998999885778722
Q ss_pred EEE--E--ECCCEEEEEECCCCCEEEEEECCE-EEEEECCC
Q ss_conf 999--8--469855999967987999983884-99991586
Q 000936 485 LGD--L--QTPFVKYVVWSNDMESVALLSKHA-IIIASKKL 520 (1219)
Q Consensus 485 i~~--~--~~~~v~~v~ws~dg~~la~~s~~~-i~i~~~~l 520 (1219)
+.. . ....|..+.|+|||++|++++.++ +.+|+.+.
T Consensus 527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred EEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
T ss_conf 32102640466425899899899799997997299997887
No 7
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=445.64 Aligned_cols=467 Identities=25% Similarity=0.383 Sum_probs=252.8
Q ss_pred CCEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 50511368888999991899999999779909999889891899962557797999995499999999789829999869
Q 000936 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspd~~~Lasg~~dg~I~iwd~~~g~~i~~l~~h~~~V~~i~fsp~~~~Lvsgs~Dg~I~vWd~~ 81 (1219)
+++|.+|.+.|++++|+|++++|++++.|++|++||. +++.+..+.+|.++|.+++|+|+++++++++.|+.+++|+..
T Consensus 50 ~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~ 128 (577)
T 2ymu_A 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 128 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECCCC
T ss_conf 9999689899899999899999999969897999989-997899997899988999998999989998079833520235
Q ss_pred CCEE----------------------------------------EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 9959----------------------------------------999816999879999917999999997999099997
Q 000936 82 MHRC----------------------------------------LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1219)
Q Consensus 82 ~~~~----------------------------------------~~~l~~h~~~I~~i~fs~d~~~l~s~s~dg~I~iwd 121 (1219)
.... ......|...+.++.|+|++.++++++.|+.|++|+
T Consensus 129 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~ 208 (577)
T 2ymu_A 129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208 (577)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCEEEECCCCCCCEEEEEEECCCCCCEECCCCCCEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEE
T ss_conf 52001104777743555420377632002555310000000000000268776356654169977899985999899994
Q ss_pred CCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf 99984899970689874999991499989999799909999889984211268865034204654432552345999983
Q 000936 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1219)
Q Consensus 122 ~~s~~~i~~~~~h~~~V~~l~~sp~~~~lvs~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1219)
. +++.+..+.+|...|.+++|+|++.++++++.|+.|++|+... .....+.
T Consensus 209 ~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~----------------------------~~~~~~~ 259 (577)
T 2ymu_A 209 R-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----------------------------QLLQTLT 259 (577)
T ss_dssp T-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS----------------------------CEEEEEC
T ss_pred C-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC----------------------------CEEEEEE
T ss_conf 9-9968999946889889999979999999991899899995999----------------------------7999980
Q ss_pred ECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCE
Q ss_conf 05898389999599989999967990999987999724687643888885999993599999999589819999689990
Q 000936 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1219)
Q Consensus 202 ~~~~~V~~i~~sp~g~~lvsg~~dg~I~iwd~~~~~~~~i~~~~~h~~~I~~i~~sp~g~~L~s~s~dg~I~iwd~~~~~ 281 (1219)
+|...|.+++|+|+++.+++++.|+.|++|+..... ...+.+|...|.+++|+|++..+++++.|+.|++|+... .
T Consensus 260 ~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~ 335 (577)
T 2ymu_A 260 GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-Q 335 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-C
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE---EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-C
T ss_conf 688987999996899999999599979999489958---999706889769999999999999996999599996999-7
Q ss_pred EEEEEECCCCCEEEEEEECCCCEEEEEECCC-EEEEEECCCC-------------CEEEECCCEEEEE-ECCEEEEEEEC
Q ss_conf 4899843799779999948998999996898-2689746984-------------0687539999999-48839999901
Q 000936 282 GVQTFRREHDRFWILASHPEMNLLAAGHDSG-MIVFKLERER-------------PAFAVSGDSLFYA-KDRFLRYYEFS 346 (1219)
Q Consensus 282 ~~~~~~~~~~~i~~i~~spd~~~la~g~~~g-~~v~~l~~~~-------------~~~s~~~~~l~~~-~d~~i~i~d~~ 346 (1219)
.+..+..+...+++++++|++..++++..++ +.+|+..... ..+++++..++++ .++.+++|+..
T Consensus 336 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~ 415 (577)
T 2ymu_A 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 25787478897799999899999999969998999908997899852788974899998999999999499989999699
Q ss_pred CCCCEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCEE
Q ss_conf 89501137614899988887881999716999899999079978999990499889886334554571469999848809
Q 000936 347 TQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRF 426 (1219)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~i~~spdg~~llv~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~ 426 (1219)
++.. ..+..+. . .+.+++|+|+++.+++++ .++.+.+|+... .....+.+|...+.+++|+|++++
T Consensus 416 -~~~~--~~~~~~~--~---~v~~~~~s~d~~~l~~~~--~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~ 481 (577)
T 2ymu_A 416 -GQLL--QTLTGHS--S---SVWGVAFSPDDQTIASAS--DDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQT 481 (577)
T ss_dssp -CCEE--EEEECCS--S---CEEEEEECTTSSEEEEEE--TTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTSCE
T ss_pred -CCEE--EEECCCC--C---CEEEEEECCCCCEEEEEC--CCCEEEEEECCC----CEEEEECCCCCCEEEEEECCCCCE
T ss_conf -9789--8962889--9---757999989999999993--999899997999----889997278997789999699999
Q ss_pred EEEECCCCEEEEEECCCCEEEEEECCC-CEEEEEEECCCCEEEEE--CCEEEEEECCCCEEEEEEEC--CCEEEEEECCC
Q ss_conf 999838997999956883367540796-54799991797589994--99599987698818999846--98559999679
Q 000936 427 AVLDKSSNQVLVKNLKNEVVKKSILPI-AADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT--PFVKYVVWSND 501 (1219)
Q Consensus 427 lv~~~~dg~I~Iwdl~~~~~~~i~~~~-~v~~i~~s~dg~~L~s~--d~~I~i~di~~~~~i~~~~~--~~v~~v~ws~d 501 (1219)
+++++.|+.|++|+..++..+.+..|. .|.+++|+|+|++|+++ |+.|++||. +++.+..+.. ..|..+.|+||
T Consensus 482 las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~d 560 (577)
T 2ymu_A 482 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD 560 (577)
T ss_dssp EEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTT
T ss_pred EEEEECCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCC
T ss_conf 99991989799993999789998679999899999189999999989699999969-99789897188888789999689
Q ss_pred CCEEEEEECCE-EEEEE
Q ss_conf 87999983884-99991
Q 000936 502 MESVALLSKHA-IIIAS 517 (1219)
Q Consensus 502 g~~la~~s~~~-i~i~~ 517 (1219)
+++|++++.++ +.+||
T Consensus 561 g~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 561 GQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEECCCEEEEEC
T ss_conf 99999990899999969
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=434.37 Aligned_cols=480 Identities=16% Similarity=0.220 Sum_probs=386.4
Q ss_pred CCEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC--EEEEEECCCCCCEEEEEEECCCCEEEEEECC----CEE
Q ss_conf 5051136888899999189999999977990999988989--1899962557797999995499999999789----829
Q 000936 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG--TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD----YKI 75 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspd~~~Lasg~~dg~I~iwd~~~g--~~i~~l~~h~~~V~~i~fsp~~~~Lvsgs~D----g~I 75 (1219)
+..|.+|.+.|++++|+|++++||+|+.||+|+|||+.++ .....+.+|.++|.+++|+|+++++++++.+ +.|
T Consensus 52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v 131 (611)
T 1nr0_A 52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV 131 (611)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred CEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 73765899865999999999689999489978994898984156676225578448999899999799998997736699
Q ss_pred EEEECCCCEEEEEECCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEE
Q ss_conf 9998699959999816999879999917999-999997999099997999848999706898749999914999899997
Q 000936 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (1219)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~I~~i~fs~d~~-~l~s~s~dg~I~iwd~~s~~~i~~~~~h~~~V~~l~~sp~~~~lvs~s 154 (1219)
++|| .+....++.+|...|.+++|+|+++ .+++++.|++|++||..++++...+.+|...|.+++|+|+++++++++
T Consensus 132 ~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s 209 (611)
T 1nr0_A 132 FLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209 (611)
T ss_dssp EETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEE--CCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE
T ss_conf 9963--89976325478898369998899982999992898099997999757665200257169999979999899998
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 99909999889984211268865034204654432552345999983058983899995999899999679909999879
Q 000936 155 LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 234 (1219)
Q Consensus 155 ~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~sp~g~~lvsg~~dg~I~iwd~~ 234 (1219)
.|++|++||..+++........ . ....+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 210 ~D~~i~lwd~~~g~~~~~~~~~----------~----------~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 210 GDGTIVLYNGVDGTKTGVFEDD----------S----------LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp TTSCEEEEETTTCCEEEECBCT----------T----------SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCCEEEEECCCCCEEEEECCC----------C----------CCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 9991999889998286651366----------4----------3235667878999997999999999089809999688
Q ss_pred CCCEEE-----------------------------------------EEEECCCCCCEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 997246-----------------------------------------876438888859999935999999995898199
Q 000936 235 ETKAWE-----------------------------------------VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIR 273 (1219)
Q Consensus 235 ~~~~~~-----------------------------------------i~~~~~h~~~I~~i~~sp~g~~L~s~s~dg~I~ 273 (1219)
+.+... ...+.+|...|++++|+|++++|++++.|+.|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~ 349 (611)
T 1nr0_A 270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349 (611)
T ss_dssp TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCCEE
T ss_conf 87013440478876640689997388799995899689996889974469837888889999918999899995898499
Q ss_pred EEECCCCEEEEEE-ECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC-----------------CEEEECCCEEEEE
Q ss_conf 9968999048998-437997799999489989999968982689746984-----------------0687539999999
Q 000936 274 VWDVTKRTGVQTF-RREHDRFWILASHPEMNLLAAGHDSGMIVFKLERER-----------------PAFAVSGDSLFYA 335 (1219)
Q Consensus 274 iwd~~~~~~~~~~-~~~~~~i~~i~~spd~~~la~g~~~g~~v~~l~~~~-----------------~~~s~~~~~l~~~ 335 (1219)
+||+.++.....+ ..|...+.++++++++.++..+.++.+.+|+..... ..+++++..++..
T Consensus 350 ~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~ 429 (611)
T 1nr0_A 350 SWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 429 (611)
T ss_dssp EEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE
T ss_pred EEECCCCCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEE
T ss_conf 99788792563216677650789998789969999848966895468854356521200148997079980799699999
Q ss_pred ECCEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCE
Q ss_conf 48839999901895011376148999888878819997169998999990799789999904998898863345545714
Q 000936 336 KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLG 415 (1219)
Q Consensus 336 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~spdg~~llv~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~i 415 (1219)
.++.+++|+ .++ .. .+. .. . .+.+++|+|+|+.+++++ .|+.+++|++........ ...+|...+
T Consensus 430 ~~~~v~~~~--~~~-~~--~~~-~~--~---~v~~va~spdg~~lasgs--~D~~v~lwd~~~~~~~~~--~~~~h~~~v 494 (611)
T 1nr0_A 430 CYKHIAIYS--HGK-LT--EVP-IS--Y---NSSCVALSNDKQFVAVGG--QDSKVHVYKLSGASVSEV--KTIVHPAEI 494 (611)
T ss_dssp ESSEEEEEE--TTE-EE--EEE-CS--S---CEEEEEECTTSCEEEEEE--TTSEEEEEEEETTEEEEE--EEEECSSCE
T ss_pred ECCEEEEEE--CCC-EE--EEE-CC--C---CCEEEEEECCCCEEEEEC--CCCEEEEEECCCCCEEEE--ECCCCCCCE
T ss_conf 676399984--894-34--640-68--8---954999928998999968--997399999459922241--015778860
Q ss_pred EEEEEEECCEEEEEECCCCEEEEEECCC-C-EEEE--EECCC-CEEEEEEECCCCEEEEE--CCEEEEEECCCCE-EE-E
Q ss_conf 6999984880999983899799995688-3-3675--40796-54799991797589994--9959998769881-89-9
Q 000936 416 GSAIFIARNRFAVLDKSSNQVLVKNLKN-E-VVKK--SILPI-AADAIFYAGTGNLLCRA--EDRVVIFDLQQRL-VL-G 486 (1219)
Q Consensus 416 ~~~~fs~d~~~lv~~~~dg~I~Iwdl~~-~-~~~~--i~~~~-~v~~i~~s~dg~~L~s~--d~~I~i~di~~~~-~i-~ 486 (1219)
.+++|+|+++++++++.|++|++|++.. . .... +..|. .|.+++|+|+|++|+++ |+.|++||+.++. .+ .
T Consensus 495 ~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~ 574 (611)
T 1nr0_A 495 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 574 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCH
T ss_conf 79999899998999948998999885778722321026404664258998998997999979972999978875556326
Q ss_pred EEE---CCCEEEEEECCCCCEEEEEECCE-EEEEECC
Q ss_conf 984---69855999967987999983884-9999158
Q 000936 487 DLQ---TPFVKYVVWSNDMESVALLSKHA-IIIASKK 519 (1219)
Q Consensus 487 ~~~---~~~v~~v~ws~dg~~la~~s~~~-i~i~~~~ 519 (1219)
.+. ...+..+.|++|++ |++++.++ +.+|+..
T Consensus 575 ~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 575 IKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred HHCCCCCCCEEEEEECCCCE-EEEECCCCCEEEEECC
T ss_conf 44467656711899858997-9995288778998444
No 9
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=432.85 Aligned_cols=655 Identities=17% Similarity=0.228 Sum_probs=440.1
Q ss_pred EEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 18999625577979999954999999997898299998699959999816999879999917999999997999099997
Q 000936 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1219)
Q Consensus 42 ~~i~~l~~h~~~V~~i~fsp~~~~Lvsgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~i~fs~d~~~l~s~s~dg~I~iwd 121 (1219)
+....+.+|.+.|++++|+|+++++++++.||.|++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred CCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEE
T ss_conf 50004505898568999889999899994799899998999916778733899688999968999899992899499998
Q ss_pred CCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf 99984899970689874999991499989999799909999889984211268865034204654432552345999983
Q 000936 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1219)
Q Consensus 122 ~~s~~~i~~~~~h~~~V~~l~~sp~~~~lvs~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1219)
+.+++.+..+.+|...|.+++|+|+++++++++.||.|++|++.+.. .....+.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~--------------------------~~~~~~~ 137 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW--------------------------ALEQTFE 137 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS--------------------------EEEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCC--------------------------EEEEEEC
T ss_conf 99995879981689978999995899989999289989999899995--------------------------4879983
Q ss_pred ECCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEEECC-CCCCEEEEEECC--CCCEEEEEECCCCEEEEEC
Q ss_conf 0589838999959-99899999679909999879997246876438-888859999935--9999999958981999968
Q 000936 202 GHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTLRG-HMNNVSCVMFHA--KQDIIVSNSEDKSIRVWDV 277 (1219)
Q Consensus 202 ~~~~~V~~i~~sp-~g~~lvsg~~dg~I~iwd~~~~~~~~i~~~~~-h~~~I~~i~~sp--~g~~L~s~s~dg~I~iwd~ 277 (1219)
+|...+.+++|+| ++..+++++.||.|++|++..... ...+.. +...+.++.|+| ++.++++++.||.|++||+
T Consensus 138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215 (814)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC--SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred CCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCC--EEEEECCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 79986889999769999999994889499998999961--0698358889779999997799989999938997999999
Q ss_pred CCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCEEEEEECCEEEEEEECCCCCEEEEEEC
Q ss_conf 99904899843799779999948998999996898268974698406875399999994883999990189501137614
Q 000936 278 TKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIR 357 (1219)
Q Consensus 278 ~~~~~~~~~~~~~~~i~~i~~spd~~~la~g~~~g~~v~~l~~~~~~~s~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~ 357 (1219)
.++..+..+..+...+.+++|+|++.++++++. ++.+++|+..+++..... .
T Consensus 216 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------------------------dg~v~vwd~~~~~~~~~~--~ 267 (814)
T 3mkq_A 216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE--------------------------DGTLKIWNSSTYKVEKTL--N 267 (814)
T ss_dssp TTTEEEEEEECCSSCEEEEEECSSSSEEEEEET--------------------------TSCEEEEETTTCSEEEEE--C
T ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC--------------------------CCEEEEEECCCCCEEEEE--E
T ss_conf 999188998478888789998599999999908--------------------------996999989999477784--0
Q ss_pred CCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCC------------------------------------
Q ss_conf 89998888788199971699989999907997899999049988------------------------------------
Q 000936 358 RPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI------------------------------------ 401 (1219)
Q Consensus 358 ~~~~~~~~~~i~~i~~spdg~~llv~~~~~dg~i~i~~~~~~~~------------------------------------ 401 (1219)
... . .+.+++|+|++..++++.+.+ +.+.+|++.....
T Consensus 268 ~~~--~---~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (814)
T 3mkq_A 268 VGL--E---RSWCIATHPTGRKNYIASGFD-NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQ 341 (814)
T ss_dssp CSS--S---SEEEEEECTTCGGGEEEEEET-TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCS
T ss_pred CCC--C---CEEEEEECCCCCCEEEEEEEC-CCEEEEECCCCCCEEEECCCCCEEEECCCCCCCEEEEEEECCCCCCCCC
T ss_conf 688--8---679999924999509999907-9879997679974167779987899776366411246653046555556
Q ss_pred ----CCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCEEEEE--CCEEE
Q ss_conf ----988633455457146999984880999983899799995688336754079654799991797589994--99599
Q 000936 402 ----GRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRA--EDRVV 475 (1219)
Q Consensus 402 ----~~~~~~~~~~~~~i~~~~fs~d~~~lv~~~~dg~I~Iwdl~~~~~~~i~~~~~v~~i~~s~dg~~L~s~--d~~I~ 475 (1219)
.........+...+.+++|+|+++++++++ ++.+.+|++....... ...+..+.|+|+|++++++ ++.+.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~---~~~i~~~~~spdg~~la~~~~~g~v~ 417 (814)
T 3mkq_A 342 DEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA---FGKCQDFVWGPDSNSYALIDETGQIK 417 (814)
T ss_dssp SSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE---EEECSEEEECTTSSCEEEECTTCCEE
T ss_pred CCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEC-CCEEEEEECCCCCCCC---CCCEEEEEEECCCCEEEEEECCCCEE
T ss_conf 7620146511788765774068999999899942-9889999874544567---99547999947998599996898399
Q ss_pred EEECCCCEEEEEEECCCEEEEEECCCC----CEEEEEECCEEEEEECCCCCE-EEEEEEEEEEEEEEECCCEEEEEC---
Q ss_conf 987698818999846985599996798----799998388499991586530-342001577642890489499974---
Q 000936 476 IFDLQQRLVLGDLQTPFVKYVVWSNDM----ESVALLSKHAIIIASKKLVHQ-CTLHETIRVKSGAWDDNGVFIYTT--- 547 (1219)
Q Consensus 476 i~di~~~~~i~~~~~~~v~~v~ws~dg----~~la~~s~~~i~i~~~~l~~~-~~~~e~~~iks~~wd~~~~~iytt--- 547 (1219)
+|+...+ ....+..+.|++|+ ..++...+..+.+|+...... ..+.... +...|..++-.+...
T Consensus 418 l~~~~~~------~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~--~~v~~s~dg~~la~~~~~ 489 (814)
T 3mkq_A 418 YYKNFKE------VTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNA--KDVIWSDNGELVMIVNTN 489 (814)
T ss_dssp EEETTEE------CTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCE--EEEEECTTSSEEEEEECC
T ss_pred EEECCCC------CCCEEECCCCCCCCEECCEEEEEECCCEEEEEECCCCCEEEEEECCC--CEEEECCCCCEEEEEECC
T ss_conf 9977777------52439737867552365469999669989999987695999973588--879996999999999867
Q ss_pred ---CCEEEEEEC-C--------------------CCEEEEEECCCC---------EEEEEEECCEEEEEECCCCEE-EEE
Q ss_conf ---780347822-8--------------------943599961101---------799989277899982699659-999
Q 000936 548 ---LNHIKYCLP-N--------------------GDSGIIRTLDVP---------IYITKVSGNTIFCLDRDGKNR-AIV 593 (1219)
Q Consensus 548 ---~~~i~y~l~-~--------------------~~~~~i~~~~~~---------~~l~~~~~~~~~~l~~~~~~~-~~~ 593 (1219)
.....|.+. + .....+...... .++.....+++.++. .+... ...
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~~~~-~~~~~~~~~ 568 (814)
T 3mkq_A 490 SNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLNYFV-GGKTYNLAH 568 (814)
T ss_dssp CSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEEEEE-TTEEEEEEE
T ss_pred CCCCCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHHEEEEEEECCEEEEEEEECCEEEEECCCCEEEEEE-CCEEEEEEE
T ss_conf 6667742899995468866666416876212502221364576427876598088899976887089996-986689999
Q ss_pred ECCHHHHHHHHHHCCCHHHHHHHH-HCCCC----CCHHHHHH---HHHCCCHHHHHC-CC---C-CC--CHHHHHHHHCC
Q ss_conf 381267678987514799999766-13863----41169999---995897055302-34---5-73--30246776129
Q 000936 594 IDATEYIFKLSLLRKRYDHVMSMI-RNSQL----CGQAMIAY---LQQKGFPEVALH-FV---K-DE--RTRFNLALESG 658 (1219)
Q Consensus 594 ld~~e~~f~~~l~~~~~~~a~~~~-~~~~~----~~~~i~~~---l~~~g~~e~Al~-~~---~-d~--~~rF~lal~~g 658 (1219)
++...+........+. +.++ +.... .....+.| +..+. .+.|.+ ++ + .. ..-..+....|
T Consensus 569 ~~~~~~~~~~~~~~~~----l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~-~~~a~~~~l~~i~~~~~~~~~~~~l~~~~ 643 (814)
T 3mkq_A 569 YTKEMYLLGYLARDNK----VYLADREVHVYGYEISLEVLEFQTLTLRGE-IEEAIENVLPNVEGKDSLTKIARFLEGQE 643 (814)
T ss_dssp CSSCCEEEEEEGGGTE----EEEECTTCCEEEEECCHHHHHHHHHHHTTC-HHHHHHHTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEEECCCE----EEEECCCCCEEEEEECCHHHHHHHHHHHCC-HHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 8966799999832999----999928888799998909999969987079-99999888742884678999999998689
Q ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHH----------------HHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999809866999999999983894289----------------999986127541367897419989999999
Q 000936 659 NIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIV----------------EYAYQRTKNFERLSFLYLITGNMDKLSKML 722 (1219)
Q Consensus 659 ~~~~A~~~a~~~~~~~~w~~La~~al~~g~~~~A----------------e~~y~~~~d~~~l~~l~~~~g~~~~l~kl~ 722 (1219)
.++.|++.++ ++ ..-.+.++..|+++.| .+.+.+.++++.+..+|...+|.+++..+.
T Consensus 644 ~~~~a~~~~~---~~---~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~ 717 (814)
T 3mkq_A 644 YYEEALNISP---DQ---DQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLH 717 (814)
T ss_dssp CHHHHHHHCC---CH---HHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHEECCC---CC---CHHEEHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf 8689605278---93---14250214509999999999861767689999999998499899999998702713558998
Q ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 999982981578889985299999999999839975889999831995899999987099
Q 000936 723 KIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGD 782 (1219)
Q Consensus 723 ~~~~~~~~~~~~~~~al~lgd~~eai~i~~~~g~~~lA~~la~~~g~~~~a~~l~~~~~~ 782 (1219)
.+....+.....++.+...|+++.|+.+|.++|+++.|.+|++..+.|++|..++++.++
T Consensus 718 ~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~ 777 (814)
T 3mkq_A 718 SSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGL 777 (814)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 772999999999999998586679999998809999999999986994789999987099
No 10
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=415.36 Aligned_cols=503 Identities=15% Similarity=0.224 Sum_probs=396.7
Q ss_pred CCEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEC--CCCEEEEEECCCEEEEEE
Q ss_conf 505113688889999918999999997799099998898918999625577979999954--999999997898299998
Q 000936 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK--SQPLFVSGGDDYKIKVWN 79 (1219)
Q Consensus 2 l~~l~~h~~~V~~i~fspd~~~Lasg~~dg~I~iwd~~~g~~i~~l~~h~~~V~~i~fsp--~~~~Lvsgs~Dg~I~vWd 79 (1219)
+.++.+|.+.|.+++|+|+++++++++.||.|++||+.+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||
T Consensus 650 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd 729 (1249)
T 3sfz_A 650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729 (1249)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEE
T ss_pred EEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEE
T ss_conf 88760677778999992699989998189959998779993689995899737999984089965999980897099998
Q ss_pred CCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEEC-------------CCCCEEEEEEECC
Q ss_conf 699959999816999879999917999999997999099997999848999706-------------8987499999149
Q 000936 80 YKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG-------------HNHYVMCASFHPK 146 (1219)
Q Consensus 80 ~~~~~~~~~l~~h~~~I~~i~fs~d~~~l~s~s~dg~I~iwd~~s~~~i~~~~~-------------h~~~V~~l~~sp~ 146 (1219)
+.+++++.++.+|.+.|.+++|+|+++++++++.||.|++||+.+++....+.. ....+.+++|+|+
T Consensus 730 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 809 (1249)
T 3sfz_A 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 809 (1249)
T ss_dssp TTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT
T ss_pred CCCCCHHHEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf 99963422012777978899992599989999789859999688886553020232102467764456501799999789
Q ss_pred CCEEEEEECCCEEEEEECCCCCCCCCCCC---CC--CEEECC-----------CCCCCCCCCCCEEEEEEEECCCCEEEE
Q ss_conf 99899997999099998899842112688---65--034204-----------654432552345999983058983899
Q 000936 147 EDLVVSASLDQTVRVWDIGALRKKTVSPA---DD--ILRLSQ-----------MNTDLFGGVDAVVKYVLEGHDRGVNWA 210 (1219)
Q Consensus 147 ~~~lvs~s~dg~I~vwd~~~~~~~~~~~~---~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~V~~i 210 (1219)
+..+++++ ++.+.+||+.+......... .. .+.... ....++..........+.+|...|.++
T Consensus 810 g~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 888 (1249)
T 3sfz_A 810 GDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGV 888 (1249)
T ss_dssp SSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCEEEEEC-CCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEE
T ss_conf 98899975-89599999568972357747877760799982788889999479869999867895653227876656899
Q ss_pred EECCCCCEEEEEECCCEEEEEECCCCCEE-------E--------------------EE--------EECCCCCCEEEEE
Q ss_conf 99599989999967990999987999724-------6--------------------87--------6438888859999
Q 000936 211 AFHPTLPLIVSGADDRQVKLWRMNETKAW-------E--------------------VD--------TLRGHMNNVSCVM 255 (1219)
Q Consensus 211 ~~sp~g~~lvsg~~dg~I~iwd~~~~~~~-------~--------------------i~--------~~~~h~~~I~~i~ 255 (1219)
+|+|+++.+++++.||.|++|++...... . .. ....+...+.+++
T Consensus 889 ~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 968 (1249)
T 3sfz_A 889 MFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 968 (1249)
T ss_dssp EECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEE
T ss_conf 99899998999958972898874665201021133103689759986899813776248984476508972567278999
Q ss_pred ECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCCC-----------
Q ss_conf 935999999995898199996899904899843799779999948998999996-89826897469840-----------
Q 000936 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH-DSGMIVFKLERERP----------- 323 (1219)
Q Consensus 256 ~sp~g~~L~s~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~i~~spd~~~la~g~-~~g~~v~~l~~~~~----------- 323 (1219)
|+|++.++++++.+|.|++|++.++.....+..|...+.+++|+|++.++++++ ++.+.+|++.....
T Consensus 969 ~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~ 1048 (1249)
T 3sfz_A 969 LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVK 1048 (1249)
T ss_dssp ECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEE
T ss_pred ECCCCCEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEE
T ss_conf 95899779998699988999757872344303677716899998999989998699879999879996689852787389
Q ss_pred --EEEECCCEEEEE-ECCEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCC
Q ss_conf --687539999999-48839999901895011376148999888878819997169998999990799789999904998
Q 000936 324 --AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDS 400 (1219)
Q Consensus 324 --~~s~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~spdg~~llv~~~~~dg~i~i~~~~~~~ 400 (1219)
.++. +..++++ .++.+++||+.+++....+ ..+. . .+.+++|+|+++.++++ +.++.+++|++....
T Consensus 1049 ~~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~--~~~~--~---~v~~~~~s~d~~~l~s~--s~d~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A 1049 DFRLLQ-DSRLLSWSFDGTVKVWNVITGRIERDF--TCHQ--G---TVLSCAISSDATKFSST--SADKTAKIWSFDLLS 1118 (1249)
T ss_dssp EEEECS-SSEEEEEESSSEEEEEETTTTCCCEEE--ECCS--S---CCCCEEECSSSSSCEEE--CCSSCCCEECSSSSS
T ss_pred EEEECC-CCCEEEEECCCCEEEEECCCCCEEEEE--CCCC--C---CEEEEEECCCCCEEEEE--CCCCCEEEEECCCCC
T ss_conf 999908-995899978896899888988655887--4668--8---48999998999989998--499948998789850
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEECC-CCEEEEE---------ECCC-CEEEEEEECCCCEEEE
Q ss_conf 898863345545714699998488099998389979999568-8336754---------0796-5479999179758999
Q 000936 401 IGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKS---------ILPI-AADAIFYAGTGNLLCR 469 (1219)
Q Consensus 401 ~~~~~~~~~~~~~~i~~~~fs~d~~~lv~~~~dg~I~Iwdl~-~~~~~~i---------~~~~-~v~~i~~s~dg~~L~s 469 (1219)
....+.+|.+.+++++|+++++++++++.|+.|++|++. ++....+ ..+. .|..++|+|+|+++++
T Consensus 1119 ---~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s 1195 (1249)
T 3sfz_A 1119 ---PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVS 1195 (1249)
T ss_dssp ---CSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEE
T ss_pred ---EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEE
T ss_conf ---01255068776799999799998999828997999988999457885144444210256742899999789998997
Q ss_pred ECCEEEEEECCCCEEEEEEEC--CCEEEEEECCCCCEEEEEECCE-EEEEEC
Q ss_conf 499599987698818999846--9855999967987999983884-999915
Q 000936 470 AEDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMESVALLSKHA-IIIASK 518 (1219)
Q Consensus 470 ~d~~I~i~di~~~~~i~~~~~--~~v~~v~ws~dg~~la~~s~~~-i~i~~~ 518 (1219)
+++.+++||+.+++.+..+.. ..+..+.|++|+.++++++.++ +++|+.
T Consensus 1196 ~~g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1196 AGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp ESSSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEEEE
T ss_conf 7985999898889500464004775327999789877999668817999764
Done!