BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000937
(1218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 25/241 (10%)
Query: 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKVNGYPKIQETFVRV 704
D+ + G +G SG GK+TLL ++AG +T SG F GE ++N P + R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RG 76
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQ--INSKTKADCVNHVLKTIELDGIKESLV 762
G Q+ PH+++ E++ F L A + IN + VN V + ++L + +
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVLQLAHLLDR-- 129
Query: 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR--AVKNVADTGR 820
LS QR+R+ IG LVA PS+ +DEP + LDA A + MR + GR
Sbjct: 130 ---KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGR 185
Query: 821 TIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYN 880
T++ H ++ D++++L G PL + + G G P++ N+
Sbjct: 186 TMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM--NFL 242
Query: 881 P 881
P
Sbjct: 243 P 243
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 133 DAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 192
D + +SGGQ++R+ GR ++ P +D+ + LD + Q+ + L H
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEP-SVFLLDEPLSNLDAALRVQMRIEISRL-HKRLGR 185
Query: 193 ILISLLQPSPETFHLFDDIILMAEGKI--------LYHGPRESVLEFF 232
+I + E L D I+++ G++ LYH P + + F
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF 233
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 25/241 (10%)
Query: 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKVNGYPKIQETFVRV 704
D+ + G +G SG GK+TLL ++AG +T SG F GE ++N P + R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RG 76
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQ--INSKTKADCVNHVLKTIELDGIKESLV 762
G Q+ PH+++ E++ F L A + IN + VN V + ++L + +
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVLQLAHLLDR-- 129
Query: 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR--AVKNVADTGR 820
LS QR+R+ IG LVA PS+ +DEP + LDA A + MR + GR
Sbjct: 130 ---KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGR 185
Query: 821 TIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYN 880
T++ H ++ D++++L G PL + + G G P++ N+
Sbjct: 186 TMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM--NFL 242
Query: 881 P 881
P
Sbjct: 243 P 243
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 133 DAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 192
D + +SGGQ++R+ GR ++ P +D+ + LD + Q+ + L H
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEP-SVFLLDEPLSNLDAALRVQMRIEISRL-HKRLGR 185
Query: 193 ILISLLQPSPETFHLFDDIILMAEGKI--------LYHGPRESVLEFF 232
+I + E L D I+++ G++ LYH P + + F
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF 233
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 25/241 (10%)
Query: 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKVNGYPKIQETFVRV 704
D+ + G +G SG GK+TLL ++AG +T SG F GE ++N P + R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RG 76
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQ--INSKTKADCVNHVLKTIELDGIKESLV 762
G Q+ PH+++ E++ F L A + IN + VN V + ++L + +
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVLQLAHLLDR-- 129
Query: 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR--AVKNVADTGR 820
LS QR+R+ IG LVA PS+ +D+P + LDA A + MR + GR
Sbjct: 130 ---KPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGR 185
Query: 821 TIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYN 880
T++ H ++ D++++L G PL + + G G P++ N+
Sbjct: 186 TMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM--NFL 242
Query: 881 P 881
P
Sbjct: 243 P 243
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 133 DAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 192
D + +SGGQ++R+ GR ++ P +D+ + LD + Q+ + L H
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEP-SVFLLDQPLSNLDAALRVQMRIEISRL-HKRLGR 185
Query: 193 ILISLLQPSPETFHLFDDIILMAEGKI--------LYHGPRESVLEFF 232
+I + E L D I+++ G++ LYH P + + F
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF 233
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 10/196 (5%)
Query: 653 LRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP--KIQETFVRVSGYCEQ 710
+ G AL+G SG GK+T++ +L + KG+I ++G I F+R +
Sbjct: 441 VNAGQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDGVDVRDINLEFLRKNVAVVS 498
Query: 711 TDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770
+ + TIEE++ ++ + K +KT L +LVG G L
Sbjct: 499 QEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKT--LPNGYNTLVGDRGTQ-L 555
Query: 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPS 830
S Q++R+ I LV NP I+ +DE T+ LDA + IV +A+ A GRT + H+
Sbjct: 556 SGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHR-- 612
Query: 831 IDIFESFDELILLKTG 846
+ + D +I K G
Sbjct: 613 LSTIRNADLIISCKNG 628
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 96/194 (49%), Gaps = 16/194 (8%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP----KI 697
++++L ++ ++ PG AL+G SG GK+T++ +L + GEI ++G
Sbjct: 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNP 1148
Query: 698 QETFVRVSGYCEQTDIHSPHITIEESLFFS---AWLRLAPQINSKTKADCVNHVLKTIEL 754
+ T +++ ++ + +I E++ + + + +A + A+ N + EL
Sbjct: 1149 EHTRSQIAIVSQEPTLFD--CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFI---AEL 1203
Query: 755 DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 814
E+ VG G LS Q++R+ I LV NP I+ +DE T+ LD + +V A+ +
Sbjct: 1204 PEGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL-D 1261
Query: 815 VADTGRTIVCTIHQ 828
A GRT + H+
Sbjct: 1262 RAREGRTCIVIAHR 1275
Score = 37.0 bits (84), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 128 DTLVGDAIRRG--ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHL 185
+TLVGD RG +SGGQK+R+ R ++ P K + +D+ T+ LD + + L
Sbjct: 545 NTLVGD---RGTQLSGGQKQRIAIARALVRNP-KILLLDEATSALDAESEGIVQQALDKA 600
Query: 186 AHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229
A I+ L T D II G+++ G +++
Sbjct: 601 AKGRTTIIIAHRLS----TIRNADLIISCKNGQVVEVGDHRALM 640
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 6/46 (13%)
Query: 128 DTLVGDAIRRG--ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLD 171
+T VGD RG +SGGQK+R+ R ++ P K + +D+ T+ LD
Sbjct: 1208 ETRVGD---RGTQLSGGQKQRIAIARALVRNP-KILLLDEATSALD 1249
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 19/212 (8%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L DV G + ++G +G+GKTTLL +LAG + GEI ++G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRKN 82
Query: 705 SGYCEQTDIHSPHI---TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
GY Q S I T+EE + FS +I +++ + K +EL G+
Sbjct: 83 VGYVFQN--PSSQIIGATVEEDVAFSL------EIMGLDESEMRKRIKKVLELVGLSGLA 134
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT 821
P LS Q++RL I L + + +DEP + LD + + + ++++ + G+
Sbjct: 135 AADP--LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG 192
Query: 822 IVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
I+ H+ ++ + D IL + G I + G
Sbjct: 193 IILVTHE--LEYLDDMD-FILHISNGTIDFCG 221
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 18/217 (8%)
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP-KIQETF 701
L++L + +R G + ++G SG+GK+T L L + +GEI ++G K ++T
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD--EGEIIIDGINLKAKDTN 73
Query: 702 V----RVSGYCEQTDIHSPHITIEESLFFSAW-LRLAPQINSKTKADCVNHVLKTIELDG 756
+ G Q PH+T+ ++ + +R P+ ++ KA ++ ++ G
Sbjct: 74 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA------MELLDKVG 127
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
+K+ P LS Q +R+ I L P I+ DEPT+ LD V+ +K +A
Sbjct: 128 LKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 185
Query: 817 DTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
+ G T+V H+ + + +L GG II G
Sbjct: 186 NEGMTMVVVTHE--MGFAREVGDRVLFMDGGYIIEEG 220
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 18/217 (8%)
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP-KIQETF 701
L++L + +R G + ++G SG+GK+T L L + +GEI ++G K ++T
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD--EGEIIIDGINLKAKDTN 94
Query: 702 V----RVSGYCEQTDIHSPHITIEESLFFSAW-LRLAPQINSKTKADCVNHVLKTIELDG 756
+ G Q PH+T+ ++ + +R P+ ++ KA ++ ++ G
Sbjct: 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA------MELLDKVG 148
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
+K+ P LS Q +R+ I L P I+ DEPT+ LD V+ +K +A
Sbjct: 149 LKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206
Query: 817 DTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
+ G T+V H+ + + +L GG II G
Sbjct: 207 NEGMTMVVVTHE--MGFAREVGDRVLFMDGGYIIEEG 241
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 16/219 (7%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGC----FKGEIKVNGYPKI 697
K+ LD+V + G ++G SGAGKTT + ++AG F + + I
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSK-TKADCVNHVLKTIELDG 756
R G QT P++T E++ F P N K +K + V + ++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAF-------PLTNMKMSKEEIRKRVEEVAKILD 129
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV- 815
I L P LS Q++R+ + LV +PS++ +DEP + LDAR VK V
Sbjct: 130 IHHVLNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 816 ADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
+ G T++ H P+ DIF D + +L G + P
Sbjct: 188 SRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKP 225
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 116/256 (45%), Gaps = 21/256 (8%)
Query: 604 NTSQMILPFQPITMVFQDLQYSIDTPLEMRRREC-----------GLAHKLQLLDDVTGT 652
N QM L DL+ D P + RE K +L D+T
Sbjct: 318 NMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFH 377
Query: 653 LRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP--KIQETFVRVSGYCEQ 710
++PG AL+G +G+GKTT++++L + +G+I V+G KI+ + +R S
Sbjct: 378 IKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVL 435
Query: 711 TDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770
D T++E+L + +I K +H +K + +G + L L
Sbjct: 436 QDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLP-EGYETVLTD--NGEDL 492
Query: 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPS 830
S QR+ L I +ANP I+ +DE T+ +D + + A+ + + G+T + H+
Sbjct: 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAHR-- 549
Query: 831 IDIFESFDELILLKTG 846
++ ++ D +I+L+ G
Sbjct: 550 LNTIKNADLIIVLRDG 565
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 18/214 (8%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETF 701
++Q+L + ++ G AL+G SG GK+T + ++ ++ G + ++G I+
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDG-QDIRTIN 458
Query: 702 VR----VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTK-ADCVNHVLKTIELDG 756
VR + G Q + TI E++ + +I K A+ + ++K L
Sbjct: 459 VRYLREIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMK---LPH 514
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
++LVG G LS Q++R+ I LV NP I+ +DE T+ LD + A+V A+ A
Sbjct: 515 QFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-A 572
Query: 817 DTGRTIVCTIHQPSI----DIFESFDELILLKTG 846
GRT + H+ S D+ FD ++++ G
Sbjct: 573 REGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 22/165 (13%)
Query: 70 GVGSRADILLELSGRE-----EEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD 124
G+ S+ IL + S E + +R++ +I K ++H+ +L YN
Sbjct: 1110 GIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYN------- 1162
Query: 125 ICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQH 184
T VGD + +SGGQK+R+ R ++ P + +D+ T+ LD + + L
Sbjct: 1163 ----TRVGDKGTQ-LSGGQKQRIAIARALVRQP-HILLLDEATSALDTESEKVVQEALDK 1216
Query: 185 LAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229
++ L T D I+++ GK+ HG + +L
Sbjct: 1217 AREGRTCIVIAHRL----STIQNADLIVVIQNGKVKEHGTHQQLL 1257
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 128 DTLVGDAIRRG--ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHL 185
DTLVG+ RG +SGGQK+R+ R ++ P K + +D+ T+ LD + S +V
Sbjct: 517 DTLVGE---RGAQLSGGQKQRIAIARALVRNP-KILLLDEATSALD-TESEAVVQAALDK 571
Query: 186 AHITDATILIS 196
A TI+I+
Sbjct: 572 AREGRTTIVIA 582
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 18/214 (8%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETF 701
++Q+L + ++ G AL+G SG GK+T + ++ ++ G + ++G I+
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDG-QDIRTIN 458
Query: 702 VR----VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTK-ADCVNHVLKTIELDG 756
VR + G Q + TI E++ + +I K A+ + ++K L
Sbjct: 459 VRYLREIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMK---LPH 514
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
++LVG G LS Q++R+ I LV NP I+ +DE T+ LD + A+V A+ A
Sbjct: 515 QFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-A 572
Query: 817 DTGRTIVCTIHQPSI----DIFESFDELILLKTG 846
GRT + H+ S D+ FD ++++ G
Sbjct: 573 REGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 22/165 (13%)
Query: 70 GVGSRADILLELSGRE-----EEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD 124
G+ S+ IL + S E + +R++ +I K ++H+ +L YN
Sbjct: 1110 GIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYN------- 1162
Query: 125 ICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQH 184
T VGD + +SGGQK+R+ R ++ P + +D+ T+ LD + + L
Sbjct: 1163 ----TRVGDKGTQ-LSGGQKQRIAIARALVRQP-HILLLDEATSALDTESEKVVQEALDK 1216
Query: 185 LAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229
++ L T D I+++ GK+ HG + +L
Sbjct: 1217 AREGRTCIVIAHRL----STIQNADLIVVIQNGKVKEHGTHQQLL 1257
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 128 DTLVGDAIRRG--ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHL 185
DTLVG+ RG +SGGQK+R+ R ++ P K + +D+ T+ LD + S +V
Sbjct: 517 DTLVGE---RGAQLSGGQKQRIAIARALVRNP-KILLLDEATSALD-TESEAVVQAALDK 571
Query: 186 AHITDATILIS 196
A TI+I+
Sbjct: 572 AREGRTTIVIA 582
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.8 bits (146), Expect = 5e-09, Method: Composition-based stats.
Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 16/219 (7%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGC----FKGEIKVNGYPKI 697
K+ LD+V + G ++G SGAGKTT + ++AG F + + I
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSK-TKADCVNHVLKTIELDG 756
R G QT P++T E++ F P N K +K + V + ++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAF-------PLTNMKMSKEEIRKRVEEVAKILD 129
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV- 815
I L P LS Q++R+ + LV +PS++ +DEP + LDAR VK V
Sbjct: 130 IHHVLNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 816 ADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
+ G T++ H P+ DIF D + +L G + P
Sbjct: 188 SRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKP 225
Score = 29.6 bits (65), Expect = 9.6, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 137 RGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILIS 196
R +SGGQ++R+ R ++ P + +D+ + LD ++ + T+L+
Sbjct: 139 RELSGGQQQRVALARALVKDP-SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVV 197
Query: 197 LLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
P+ + F + D + ++ +GK++ G E + +
Sbjct: 198 SHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYD 230
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 60.8 bits (146), Expect = 5e-09, Method: Composition-based stats.
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG-CFKGEIKVNGY-PKI 697
K++ +D V+ ++ G AL+G SG GKTT L +LAG + TSG + ++ VN PK
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757
+E G Q PH+T+ E++ F LR A +I+ V + + + +D +
Sbjct: 75 REV-----GMVFQNYALYPHMTVFENIAFP--LR-ARRISKDEVEKRVVEIARKLLIDNL 126
Query: 758 KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV-A 816
+ + LS Q++R+ + LV P ++ DEP + LDA I+ +K++
Sbjct: 127 LDR-----KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ 181
Query: 817 DTGRTIVCTIH 827
+ G T V H
Sbjct: 182 ELGITSVYVTH 192
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 60.5 bits (145), Expect = 6e-09, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 15/160 (9%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG-CFKGEIKVNGYPKIQETFV 702
L+++ ++ G AL+G SG+GK+TLL +AG + TSG + E V P
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD---- 74
Query: 703 RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLV 762
R G Q PH+T+ +++ F LR AP+ K V V K + +D + L
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAKMLHIDKL---LN 128
Query: 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA 802
P LS Q++R+ I LV P ++ +DEP + LDA
Sbjct: 129 RYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL 198
+SGGQ++R+ R ++ P + + +D+ + LD ++ L+ L T + +
Sbjct: 134 LSGGQQQRVAIARALVKEP-EVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT-VYVT 191
Query: 199 QPSPETFHLFDDIILMAEGKILYHGPRESV 228
E + D I ++ EG+IL G + V
Sbjct: 192 HDQAEALAMADRIAVIREGEILQVGTPDEV 221
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 110/224 (49%), Gaps = 37/224 (16%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY------PK-- 696
+LD++ +++ G + ++G SG+GK+TL ++ ++ G++ ++G+ P
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 77
Query: 697 -------IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
+Q+ + + + +P +++E+ + ++A L A S
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGAHDFIS----------- 125
Query: 750 KTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
EL ++VG G +GLS QR+R+ I LV NP I+ DE T+ LD + ++M
Sbjct: 126 ---ELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 810 RAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
R + + GRT++ H+ S ++ D +I+++ G+I+ G
Sbjct: 182 RNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQG 221
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 128 DTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAH 187
+T+VG+ G+SGGQ++R+ R ++ P K + D+ T+ LD + I+ + +
Sbjct: 132 NTIVGEQ-GAGLSGGQRQRIAIARALVNNP-KILIFDEATSALDYESEHVIMRNMHKICK 189
Query: 188 ITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFES 234
I+ L T D II+M +GKI+ G + +L ES
Sbjct: 190 GRTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHKELLSEPES 232
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 60.1 bits (144), Expect = 7e-09, Method: Composition-based stats.
Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 20/211 (9%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLA--GRKTSG-CFKGEIKVNGYPKIQETFV 702
L +V ++ G ++MG SG+GK+T+L+++ + T G + IK N + T +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 703 RVS--GYCEQTDIHSPHIT----IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
R G+ Q P +T +E L F ++ + K +C LK EL
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC----LKMAEL-- 134
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV- 815
E + LS Q++R+ I L NP II D+PT LD++ +M+ +K +
Sbjct: 135 --EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLN 192
Query: 816 ADTGRTIVCTIHQPSIDIFESFDELILLKTG 846
+ G+T+V H I++ + +I LK G
Sbjct: 193 EEDGKTVVVVTH--DINVARFGERIIYLKDG 221
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 110/224 (49%), Gaps = 37/224 (16%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY------PK-- 696
+LD++ +++ G + ++G SG+GK+TL ++ ++ G++ ++G+ P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 75
Query: 697 -------IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
+Q+ + + + +P +++E+ + ++A L A S
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGAHDFIS----------- 123
Query: 750 KTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
EL ++VG G +GLS QR+R+ I LV NP I+ DE T+ LD + ++M
Sbjct: 124 ---ELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 810 RAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
R + + GRT++ H+ S ++ D +I+++ G+I+ G
Sbjct: 180 RNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQG 219
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 128 DTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAH 187
+T+VG+ G+SGGQ++R+ R ++ P K + D+ T+ LD + I+ + +
Sbjct: 130 NTIVGEQ-GAGLSGGQRQRIAIARALVNNP-KILIFDEATSALDYESEHVIMRNMHKICK 187
Query: 188 ITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFES 234
I+ L T D II+M +GKI+ G + +L ES
Sbjct: 188 GRTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHKELLSEPES 230
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 110/224 (49%), Gaps = 37/224 (16%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY------PK-- 696
+LD++ +++ G + ++G SG+GK+TL ++ ++ G++ ++G+ P
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 697 -------IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
+Q+ + + + +P +++E+ + ++A L A S
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGAHDFIS----------- 129
Query: 750 KTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
EL ++VG G +GLS QR+R+ I LV NP I+ DE T+ LD + ++M
Sbjct: 130 ---ELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 810 RAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
R + + GRT++ H+ S ++ D +I+++ G+I+ G
Sbjct: 186 RNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQG 225
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 128 DTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAH 187
+T+VG+ G+SGGQ++R+ R ++ P K + D+ T+ LD + I+ + +
Sbjct: 136 NTIVGEQ-GAGLSGGQRQRIAIARALVNNP-KILIFDEATSALDYESEHVIMRNMHKICK 193
Query: 188 ITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFES 234
I+ L T D II+M +GKI+ G + +L ES
Sbjct: 194 GRTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHKELLSEPES 236
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 60.1 bits (144), Expect = 8e-09, Method: Composition-based stats.
Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 20/211 (9%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLA--GRKTSG-CFKGEIKVNGYPKIQETFV 702
L +V ++ G ++MG SG+GK+T+L+++ + T G + IK N + T +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 703 RVS--GYCEQTDIHSPHIT----IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
R G+ Q P +T +E L F ++ + K +C LK EL
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC----LKMAEL-- 134
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV- 815
E + LS Q++R+ I L NP II D+PT LD++ +M+ +K +
Sbjct: 135 --EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192
Query: 816 ADTGRTIVCTIHQPSIDIFESFDELILLKTG 846
+ G+T+V H I++ + +I LK G
Sbjct: 193 EEDGKTVVVVTH--DINVARFGERIIYLKDG 221
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 110/224 (49%), Gaps = 37/224 (16%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY------PK-- 696
+LD++ +++ G + ++G +G+GK+TL ++ ++ G++ ++G+ P
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 77
Query: 697 -------IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
+Q+ + + + +P +++E+ + ++A L A S
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGAHDFIS----------- 125
Query: 750 KTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
EL ++VG G +GLS QR+R+ I LV NP I+ DE T+ LD + ++M
Sbjct: 126 ---ELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 810 RAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
R + + GRT++ H+ S ++ D +I+++ G+I+ G
Sbjct: 182 RNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQG 221
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 128 DTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAH 187
+T+VG+ G+SGGQ++R+ R ++ P K + D+ T+ LD + I+ + +
Sbjct: 132 NTIVGEQ-GAGLSGGQRQRIAIARALVNNP-KILIFDEATSALDYESEHVIMRNMHKICK 189
Query: 188 ITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFES 234
I+ L T D II+M +GKI+ G + +L ES
Sbjct: 190 GRTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHKELLSEPES 232
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 110/224 (49%), Gaps = 37/224 (16%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY------PK-- 696
+LD++ +++ G + ++G SG+GK+TL ++ ++ G++ ++G+ P
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 697 -------IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
+Q+ + + + +P +++E+ + ++A L A S
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGAHDFIS----------- 129
Query: 750 KTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
EL ++VG G +GLS QR+R+ I LV NP I+ D+ T+ LD + ++M
Sbjct: 130 ---ELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 810 RAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
R + + GRT++ H+ S ++ D +I+++ G+I+ G
Sbjct: 186 RNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQG 225
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 128 DTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAH 187
+T+VG+ G+SGGQ++R+ R ++ P K + D+ T+ LD + I+ + +
Sbjct: 136 NTIVGEQ-GAGLSGGQRQRIAIARALVNNP-KILIFDQATSALDYESEHVIMRNMHKICK 193
Query: 188 ITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFES 234
I+ L T D II+M +GKI+ G + +L ES
Sbjct: 194 GRTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHKELLSEPES 236
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 20/167 (11%)
Query: 653 LRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEI----KVNGYPKIQETFV----RV 704
++ G L+G SG GKTT L ++AG + +G+I K+ P+ + FV R
Sbjct: 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPS--RGQIYIGDKLVADPE-KGIFVPPKDRD 82
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764
Q+ PH+T+ +++ F LR P + + V + EL G+ E L
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVP------RQEIDQRVREVAELLGLTELLNRK 136
Query: 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA 811
P LS QR+R+ +G +V P + MDEP + LDA+ + MRA
Sbjct: 137 P--RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK-LRVRMRA 180
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 109/224 (48%), Gaps = 37/224 (16%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY------PK-- 696
+LD++ +++ G + ++G SG+GK+TL ++ ++ G++ ++G+ P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 75
Query: 697 -------IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
+Q+ + + + +P +++E+ + ++A L A S
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGAHDFIS----------- 123
Query: 750 KTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
EL ++VG G +GLS QR+R+ I LV NP I+ DE T+ LD + ++M
Sbjct: 124 ---ELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 810 RAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
R + + GRT++ I + ++ D +I+++ G+I+ G
Sbjct: 180 RNMHKIC-KGRTVI--IIAARLSTVKNADRIIVMEK-GKIVEQG 219
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 128 DTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAH 187
+T+VG+ G+SGGQ++R+ R ++ P K + D+ T+ LD + I+ + +
Sbjct: 130 NTIVGEQ-GAGLSGGQRQRIAIARALVNNP-KILIFDEATSALDYESEHVIMRNMHKICK 187
Query: 188 ITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFES 234
I+ + L T D II+M +GKI+ G + +L ES
Sbjct: 188 GRTVIIIAARL----STVKNADRIIVMEKGKIVEQGKHKELLSEPES 230
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 109/224 (48%), Gaps = 37/224 (16%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY------PK-- 696
+LD++ +++ G + ++G SG+GK+TL ++ ++ G++ ++G+ P
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 697 -------IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
+Q+ + + + +P +++E+ + ++A L A S
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGAHDFIS----------- 129
Query: 750 KTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
EL ++VG G +GLS QR+R+ I LV NP I+ DE T+ LD + ++M
Sbjct: 130 ---ELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 810 RAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
R + + GRT++ I + ++ D +I+++ G+I+ G
Sbjct: 186 RNMHKIC-KGRTVI--IIAARLSTVKNADRIIVMEK-GKIVEQG 225
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 128 DTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAH 187
+T+VG+ G+SGGQ++R+ R ++ P K + D+ T+ LD + I+ + +
Sbjct: 136 NTIVGEQ-GAGLSGGQRQRIAIARALVNNP-KILIFDEATSALDYESEHVIMRNMHKICK 193
Query: 188 ITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFES 234
I+ + L T D II+M +GKI+ G + +L ES
Sbjct: 194 GRTVIIIAARL----STVKNADRIIVMEKGKIVEQGKHKELLSEPES 236
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 15/198 (7%)
Query: 652 TLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG-CFKGEIKVNGYPKIQETFVRVSGYC 708
T++ G L+G SG GKTT L ++AG T G + G+ V P V
Sbjct: 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF--- 89
Query: 709 EQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768
Q+ PH+T+ E++ F ++ P K + V EL I+E L P +
Sbjct: 90 -QSYAVWPHMTVYENIAFPLKIKKFP------KDEIDKRVRWAAELLQIEELLNRYP--A 140
Query: 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQ 828
LS QR+R+ + +V P ++ MDEP + LDA+ + +K + + +
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 829 PSIDIFESFDELILLKTG 846
++ D + ++ G
Sbjct: 201 DQVEAMTMGDRIAVMNRG 218
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 18/191 (9%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQE 699
K ++L ++ + G + L+G +GAGKTT L +++ + +SG + V G ++E
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI----VTVFGKNVVEE 82
Query: 700 TF-VR--VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
VR +S E+ + IE +LR + + ++ V + E+ G
Sbjct: 83 PHEVRKLISYLPEEAGAYRNMQGIE-------YLRFVAGFYASSSSEIEEMVERATEIAG 135
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
+ E + VS S ++L I L+ NP + +DEPT+GLD A V + +K +
Sbjct: 136 LGEKIKD--RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193
Query: 817 DTGRTIVCTIH 827
G TI+ + H
Sbjct: 194 QEGLTILVSSH 204
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 118/259 (45%), Gaps = 39/259 (15%)
Query: 612 FQPITMVFQ--DLQYSIDT-----PLEMRRRECGLAH--------KLQLLDDVTGTLRPG 656
F + VFQ D Y I P+E+++ + H + +L D+ ++ G
Sbjct: 308 FASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKG 367
Query: 657 VLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSP 716
A +G+SG GK+TL++++ + G+I ++G+ + + + +
Sbjct: 368 ETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGH--------NIKDFLTGSLRNQI 417
Query: 717 HITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP-------GVSG 769
+ ++++ FS ++ + T D V++ ++ + ++ +P G G
Sbjct: 418 GLVQQDNILFSDTVKENILLGRPTATD--EEVVEAAKMANAHDFIMNLPQGYDTEVGERG 475
Query: 770 --LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIH 827
LS Q++RL+I + NP I+ +DE T+ LD + +I+ A+ +V RT + H
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL-DVLSKDRTTLIVAH 534
Query: 828 QPSIDIFESFDELILLKTG 846
+ S D++++++ G
Sbjct: 535 RLS--TITHADKIVVIENG 551
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 21/139 (15%)
Query: 93 DPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGI--SGGQKRRLTTG 150
D ++ K + H NL Y DT VG+ RG+ SGGQK+RL+
Sbjct: 444 DEEVVEAAKMANAHDFIMNLPQGY-----------DTEVGE---RGVKLSGGQKQRLSIA 489
Query: 151 REMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDD 210
R L P + +D+ T+ LD+ + I L L+ D T LI + S T D
Sbjct: 490 RIFLNNP-PILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLSTITHA--DK 544
Query: 211 IILMAEGKILYHGPRESVL 229
I+++ G I+ G ++
Sbjct: 545 IVVIENGHIVETGTHRELI 563
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 15/198 (7%)
Query: 652 TLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG-CFKGEIKVNGYPKIQETFVRVSGYC 708
T++ G L+G SG GKTT L ++AG T G + G+ V P V
Sbjct: 34 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF--- 90
Query: 709 EQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768
Q+ PH+T+ E++ F ++ P K + V EL I+E L P +
Sbjct: 91 -QSYAVWPHMTVYENIAFPLKIKKFP------KDEIDKRVRWAAELLQIEELLNRYP--A 141
Query: 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQ 828
LS QR+R+ + +V P ++ MDEP + LDA+ + +K + + +
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 829 PSIDIFESFDELILLKTG 846
++ D + ++ G
Sbjct: 202 DQVEAMTMGDRIAVMNRG 219
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 7/214 (3%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ----ET 700
+L V + G + ALMG +GAGK+TL +LAG +GEI ++G ++ E
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
+ Q + P +TI L + +L ++ A+ V K +EL ES
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGV---AEFWTKVKKALELLDWDES 134
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGR 820
+ G S ++KR I LV P+ +DE +GLD A +V R V +
Sbjct: 135 YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNF 194
Query: 821 TIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
+ H I + D++ ++ G + GP
Sbjct: 195 GALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 15/213 (7%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPK--IQETF 701
L + ++ G +TA++G +G GK+TL G + +SG + K Y + I +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
+ + D ++ + + F A P+ + + D + LK ++ +K+
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD---NALKRTGIEHLKDK- 139
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR-AVKNVADTGR 820
LS Q+KR+ I LV P ++ +DEPT GLD + +M+ V+ + G
Sbjct: 140 ----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195
Query: 821 TIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
TI+ H IDI + + + + GR+I G
Sbjct: 196 TIIIATH--DIDIVPLYCDNVFVMKEGRVILQG 226
Score = 34.3 bits (77), Expect = 0.43, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL 198
+S GQK+R+ +++ P K + +D+ T GLD +I+ L + TI+I+
Sbjct: 144 LSFGQKKRVAIAGVLVMEP-KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH 202
Query: 199 QPSPETFHLFDDIILMAEGKILYHG-PRESVLE 230
+ D++ +M EG+++ G P+E E
Sbjct: 203 DIDIVPLYC-DNVFVMKEGRVILQGNPKEVFAE 234
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 24/216 (11%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
L ++G +R G + L+G +GAGK+TLL +AG TSG KG I+ G P + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLEAWSATKLA 72
Query: 706 GYCEQTDIHSPHITIEESLFFSA--WLRLAPQINSKTKADCVNHVLKTIELDG-IKESLV 762
+H +++ +++ F+ W L + KT+ + +N V + LD + S
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 763 GIPGVSGLSTEQRKRLTIGVELV---ANPS--IIFMDEPTTGLDARAAAIVMRAVKNVAD 817
+ G QR RL V + ANP+ ++ +D+P LD + + + + ++
Sbjct: 126 QLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQ 181
Query: 818 TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
G IV + H + + + +L GG+++ SG
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 53.9 bits (128), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Query: 687 GEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVN 746
G++KV +++ R++ + ++ S H+T+ E++ + Q+ +K D
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWS-HMTVLENV-----MEAPIQVLGLSKHDARE 131
Query: 747 HVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAA 806
LK + GI E G V LS Q++R++I L P ++ DEPT+ LD
Sbjct: 132 RALKYLAKVGIDERAQGKYPVH-LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVG 190
Query: 807 IVMRAVKNVADTGRTIVCTIHQ 828
V+R ++ +A+ G+T+V H+
Sbjct: 191 EVLRIMQQLAEEGKTMVVVTHE 212
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL 198
+SGGQ++R++ R + + P + D+ T+ LD +++ +Q LA + ++ +
Sbjct: 154 LSGGQQQRVSIARALAMEP-DVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVT 210
Query: 199 QPSPETFHLFDDIILMAEGKILYHGPRESVL 229
H+ +I + +GKI G E V
Sbjct: 211 HEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 24/216 (11%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
L ++G +R G + L+G +GAGK+TLL +AG TSG KG I+ G P + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLEAWSATKLA 72
Query: 706 GYCEQTDIHSPHITIEESLFFSA--WLRLAPQINSKTKADCVNHVLKTIELDG-IKESLV 762
+H +++ +++ F+ W L + KT+ + +N V + LD + S
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 763 GIPGVSGLSTEQRKRLTIGVELV---ANPS--IIFMDEPTTGLDARAAAIVMRAVKNVAD 817
+ G QR RL V + ANP+ ++ +D+P LD + + + + ++
Sbjct: 126 QLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQ 181
Query: 818 TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
G IV + H + + + +L GG+++ SG
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 53.5 bits (127), Expect = 7e-07, Method: Composition-based stats.
Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 20/211 (9%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLA--GRKTSG-CFKGEIKVNGYPKIQETFV 702
L +V ++ G ++ G SG+GK+T L+++ + T G + IK N + T +
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 703 RVS--GYCEQTDIHSPHIT----IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
R G+ Q P +T +E L F + + K +C LK EL
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALEC----LKXAEL-- 134
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV- 815
E + LS Q++R+ I L NP II DEPT LD++ + + +K +
Sbjct: 135 --EERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLN 192
Query: 816 ADTGRTIVCTIHQPSIDIFESFDELILLKTG 846
+ G+T+V H I++ + +I LK G
Sbjct: 193 EEDGKTVVVVTH--DINVARFGERIIYLKDG 221
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 15/164 (9%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFV- 702
+ D++ ++ G L+G SG GKTT L +AG T G E + P+ + FV
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPE-KGVFVP 80
Query: 703 ---RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
R Q+ PH T+ +++ F LR P K + V + E G+ E
Sbjct: 81 PKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVP------KQEIDKRVREVAEXLGLTE 134
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
L P LS QR+R+ +G ++ P + DEP + LDA+
Sbjct: 135 LLNRKP--RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 57/216 (26%), Positives = 102/216 (47%), Gaps = 24/216 (11%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
L ++G +R G + L+G +GAGK+TLL AG TSG KG I+ G P + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG--KGSIQFAGQPLEAWSATKLA 72
Query: 706 GYCEQTDIHSPHITIEESLFFSA--WLRLAPQINSKTKADCVNHVLKTIELDG-IKESLV 762
+H +++ +++ F+ W L + KT+ + +N V + LD + S
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 763 GIPGVSGLSTEQRKRLTIGVELV---ANPS--IIFMDEPTTGLDARAAAIVMRAVKNVAD 817
+ G QR RL V + ANP+ ++ +DEP LD + + + + ++
Sbjct: 126 QLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQ 181
Query: 818 TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
G IV + H + + + +L GG+ + SG
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 17/179 (9%)
Query: 653 LRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTD 712
L G + A++G +G GK+TLLD+L G +G+I+V Y I G+ Q
Sbjct: 28 LNKGDILAVLGQNGCGKSTLLDLLLG--IHRPIQGKIEV--YQSI--------GFVPQF- 74
Query: 713 IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772
SP S+ + + IN+ K ++ + LD + + + + LS
Sbjct: 75 FSSP---FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSG 131
Query: 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPS 830
QR+ + I + + +I +DEPT+ LD IV+ + ++A + T+V T HQP+
Sbjct: 132 GQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 95 DIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154
DI ++T ++ K DY + + LD T + +SGGQ++ + R +
Sbjct: 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARA-I 143
Query: 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 201
K + +D+ T+ LD++ +++ L LA + T++ + QP+
Sbjct: 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 97/195 (49%), Gaps = 13/195 (6%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP--KIQE 699
++ + D + ++ G +TAL+G SG+GK+T+L +L + G I ++G+ ++
Sbjct: 356 EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNP 413
Query: 700 TFVRVS-GYCEQTDIHSPHITIEESLFFSA---WLRLAPQINSKTKADCVNHVLKTIELD 755
++R G Q I +I E++ + A A +I + A+ N V
Sbjct: 414 VWLRSKIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEI--QRVAEVANAVAFIRNFP 470
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815
++VG GV LS Q++R+ I L+ NP I+ +DE T+ LDA +V A+ +
Sbjct: 471 QGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL 529
Query: 816 ADTGRTIVCTIHQPS 830
D GRT++ H+ S
Sbjct: 530 MD-GRTVLVIAHRLS 543
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 128 DTLVGDAIRRGI--SGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHL 185
+T+VG+ +G+ SGGQK+R+ R +L P K + +D+ T+ LD + + L L
Sbjct: 474 NTVVGE---KGVLLSGGQKQRIAIARALLKNP-KILLLDEATSALDAENEYLVQEALDRL 529
Query: 186 AHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229
+ T+L+ + S T + + ++ +GKI +G E +L
Sbjct: 530 --MDGRTVLVIAHRLS--TIKNANMVAVLDQGKITEYGKHEELL 569
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 24/216 (11%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
L ++G +R G + L+G +GAGK+TLL AG TSG KG I+ G P + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG--KGSIQFAGQPLEAWSATKLA 72
Query: 706 GYCEQTDIHSPHITIEESLFFSA--WLRLAPQINSKTKADCVNHVLKTIELDG-IKESLV 762
+H +++ +++ F+ W L + KT+ + +N V + LD + S
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 763 GIPGVSGLSTEQRKRLTIGVELV---ANPS--IIFMDEPTTGLDARAAAIVMRAVKNVAD 817
+ G QR RL V + ANP+ ++ +DEP LD + + + + +
Sbjct: 126 QLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQ 181
Query: 818 TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
G IV + H + + + +L GG+ + SG
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 15/193 (7%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ET 700
Q+L D++ +P + A G SG GK+T+ +L + GEI ++G P E
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNISLEN 73
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
+ G+ Q D TI E+L + L + ++ ++ + +
Sbjct: 74 WRSQIGFVSQ-DSAIMAGTIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVENMPDQ 128
Query: 761 L---VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD 817
L VG GV +S QR+RL I + NP I+ +DE T LD+ + ++V +A+ ++
Sbjct: 129 LNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM- 186
Query: 818 TGRTIVCTIHQPS 830
GRT + H+ S
Sbjct: 187 KGRTTLVIAHRLS 199
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 128 DTLVGDAIRRG--ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHL 185
D L + RG ISGGQ++RL R L P K + +D+ T LD + + L L
Sbjct: 127 DQLNTEVGERGVKISGGQRQRLAIARAFLRNP-KILMLDEATASLDSESESMVQKALDSL 185
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 640 AHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKI 697
A + L DV+ T+ PG AL+G SGAGK+T+L +L +SGC I+++G
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC----IRIDGQDIS 119
Query: 698 QETFVRVSGYCEQTDIHSPHITI--EESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD 755
Q T Q + S HI + ++++ F+ +A I + V +
Sbjct: 120 QVT---------QASLRS-HIGVVPQDTVLFNDT--IADNIRYGRVTAGNDEVEAAAQAA 167
Query: 756 GIKESLVGIP-------GVSG--LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAA 806
GI ++++ P G G LS +++R+ I ++ P II +DE T+ LD
Sbjct: 168 GIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 807 IVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846
+ ++ V RT + H+ S + + D+++++K G
Sbjct: 228 AIQASLAKVC-ANRTTIVVAHRLSTVV--NADQILVIKDG 264
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL 198
+SGG+K+R+ R +L P + +D+ T+ LD S I L + ++ L
Sbjct: 191 LSGGEKQRVAIARTILKAP-GIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRL 249
Query: 199 QPSPETFHLFDDIILMAEGKILYHGPRESVL 229
T D I+++ +G I+ G E++L
Sbjct: 250 ----STVVNADQILVIKDGCIVERGRHEALL 276
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 13/195 (6%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP--KIQE 699
++ + D + ++ G +TAL+G SG+GK+T+L +L + G I ++G+ ++
Sbjct: 387 EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNP 444
Query: 700 TFVRVS-GYCEQTDIHSPHITIEESLFFSA---WLRLAPQINSKTKADCVNHVLKTIELD 755
++R G Q I +I E++ + A A +I + A+ N V
Sbjct: 445 VWLRSKIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEI--QRVAEVANAVAFIRNFP 501
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815
++VG GV LS Q++R+ I L+ NP I+ +DE T+ LDA +V A+ +
Sbjct: 502 QGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL 560
Query: 816 ADTGRTIVCTIHQPS 830
D GRT++ H S
Sbjct: 561 MD-GRTVLVIAHHLS 574
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 128 DTLVGDAIRRGI--SGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHL 185
+T+VG+ +G+ SGGQK+R+ R +L P K + +D+ T+ LD + + L L
Sbjct: 505 NTVVGE---KGVLLSGGQKQRIAIARALLKNP-KILLLDEATSALDAENEYLVQEALDRL 560
Query: 186 AHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229
+ T+L+ S T + + ++ +GKI +G E +L
Sbjct: 561 --MDGRTVLVIAHHLS--TIKNANMVAVLDQGKITEYGKHEELL 600
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 99/211 (46%), Gaps = 11/211 (5%)
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDV--LAGRKTSGCFKGEIKVNGYPKIQET 700
+Q L++V+ + G + ++G SGAGK+TL+ L R T +G + V+G +
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLS 73
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
++ Q + H + S + L ++++ K + V + + L G+ +
Sbjct: 74 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 133
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-G 819
P S LS Q++R+ I L +NP ++ DE T+ LD ++ +K++ G
Sbjct: 134 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG 191
Query: 820 RTIVCTIHQPSIDIFESFDELILLKTGGRII 850
TI+ H+ +D+ + + + + + G +I
Sbjct: 192 LTILLITHE--MDVVKRICDCVAVISNGELI 220
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 133 DAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 192
D+ +SGGQK+R+ R + P K + D+ T+ LD +T+ I+ L+ + T
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNP-KVLLCDEATSALDPATTRSILELLKDINRRLGLT 193
Query: 193 ILI 195
IL+
Sbjct: 194 ILL 196
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/211 (22%), Positives = 97/211 (45%), Gaps = 11/211 (5%)
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDV--LAGRKTSGCFKGEIKVNGYPKIQET 700
+Q L++V+ + G + ++G SGAGK+TL+ L R T +G + V+G +
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLS 96
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
++ Q H + S + L ++++ K + V + + L G+ +
Sbjct: 97 ESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 156
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV-ADTG 819
P S LS Q++R+ I L +NP ++ D+ T+ LD ++ +K++ G
Sbjct: 157 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 820 RTIVCTIHQPSIDIFESFDELILLKTGGRII 850
TI+ H+ D+ + + + + + G +I
Sbjct: 215 LTILLITHE--XDVVKRICDCVAVISNGELI 243
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 133 DAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 192
D+ +SGGQK+R+ R + P K + D+ T+ LD +T+ I+ L+ + T
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNP-KVLLCDQATSALDPATTRSILELLKDINRRLGLT 216
Query: 193 ILI 195
IL+
Sbjct: 217 ILL 219
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 17/165 (10%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG---YPKIQETF 701
+L+D++ +L PG + ++G SG GKTTLL LAG + GEI ++G + K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 702 VRVS--GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTK-ADCVNHVLKTIELDGIK 758
VR GY Q + PH+T+ ++ + N K + A + +EL GI
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLG-------NGKGRTAQERQRIEAMLELTGIS 129
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
E P LS Q++R + L +P +I +DEP + LD +
Sbjct: 130 ELAGRYP--HELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 97/220 (44%), Gaps = 33/220 (15%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNGYPKIQET 700
+Q+L +T TL PG +TAL+G +G+GK+T+ +L + +G G++ ++G P +
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG---GKVLLDGEPLV--- 84
Query: 701 FVRVSGYCEQTDIHSPHITI----EESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
Q D H H + +E L F R T+ + + G
Sbjct: 85 ---------QYDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESG 134
Query: 757 IKESLVGIP-------GVSG--LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAI 807
+ + G P G +G LS QR+ + + L+ P ++ +D+ T+ LDA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLR 194
Query: 808 VMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTG 846
V R + + RT++ HQ + + E ++ LK G
Sbjct: 195 VQRLLYESPEWASRTVLLITHQ--LSLAERAHHILFLKEG 232
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 101/224 (45%), Gaps = 16/224 (7%)
Query: 652 TLRPGVLTALMGVSGAGKTTLLDVLAGR------KTSGCFKGEIKVNGYPKIQETFVRVS 705
++ G + ++G +G GK+T + +LAG+ + + G I+ ++Q F ++
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 706 GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765
+ + ++ + + L + + K + V+K +EL+ + E +
Sbjct: 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENVLEREI--- 156
Query: 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCT 825
LS + +R+ I L+ N + F DEP++ LD R RA++ +++ G++++
Sbjct: 157 --QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVV 214
Query: 826 IHQPSI-DIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEG 868
H ++ D ++ + G I+S P G + + E+ G
Sbjct: 215 EHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNG-INEFLRG 257
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 28/185 (15%)
Query: 651 GTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVRVSGYC 708
G ++ G + ++G +G GKTT + LAG T G + ++ V P+ + + Y
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYE 366
Query: 709 EQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768
+ I + + S F+ L L P L I+L + V+
Sbjct: 367 LLSKIDASKLN---SNFYKTEL-LKP--------------LGIIDLYDRE--------VN 400
Query: 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQ 828
LS + +R+ I L+ + I +DEP+ LD V RA++++ + +
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 829 PSIDI 833
+ I
Sbjct: 461 DVLXI 465
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 13/190 (6%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLA--GRKTSGCFKGEIKVNGYPKIQETF 701
++L ++ +++ G +++G SG+GK+TLL +L T G E K Y +E
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 702 V---RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK 758
+ R G+ Q P +T E++ P+ +K + + ++L + G+
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGE---YLLSEL---GLG 131
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT 818
+ L P LS +++R+ I L P ++F DEPT LD+ VM + +
Sbjct: 132 DKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189
Query: 819 GRTIVCTIHQ 828
G +IV H+
Sbjct: 190 GTSIVMVTHE 199
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 17/202 (8%)
Query: 649 VTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG-CFKGEIKVNGYPKIQETFVRVS 705
V+ +R G + L+G SG+GKTT+L ++AG R T G + G +V P + R
Sbjct: 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK----RNV 89
Query: 706 GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765
G Q H+T+ +++ F + P+ + V +L+ + L+
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRF---- 142
Query: 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVC 824
LS Q++R+ + L P ++ DEP +D + + V+ V D G T V
Sbjct: 143 -PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201
Query: 825 TIHQPSIDIFESFDELILLKTG 846
H + E D +++L G
Sbjct: 202 VTHDQE-EALEVADRVLVLHEG 222
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 27/213 (12%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYPKIQETF 701
L++V+ + G + G +G+GK+TLL ++AG TSG + GE
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE------------- 71
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTK-----ADCVNHVLKTIELDG 756
R GY + +I E+ F R+ ++ K D V V K +E G
Sbjct: 72 -RKKGYEIRRNIGIAFQYPEDQFFAE---RVFDEVAFAVKNFYPDRDPVPLVKKAMEFVG 127
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
+ LS +++R+ I +V P I+ +DEP GLD ++R V+
Sbjct: 128 LDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 187
Query: 817 DTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849
G+T++ H + D +++L+ G ++
Sbjct: 188 TLGKTVILISHDIET-VINHVDRVVVLEKGKKV 219
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 99/211 (46%), Gaps = 11/211 (5%)
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDV--LAGRKTSGCFKGEIKVNGYPKIQET 700
+Q L++V+ + G + ++G SGAGK+TL+ L R T +G + V+G +
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLS 96
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
++ Q + H + S + L ++++ K + V + + L G+ +
Sbjct: 97 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 156
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-G 819
P S LS Q++R+ I L +NP ++ D+ T+ LD ++ +K++ G
Sbjct: 157 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 820 RTIVCTIHQPSIDIFESFDELILLKTGGRII 850
TI+ H+ +D+ + + + + + G +I
Sbjct: 215 LTILLITHE--MDVVKRICDCVAVISNGELI 243
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 133 DAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 192
D+ +SGGQK+R+ R + P K + D+ T+ LD +T+ I+ L+ + T
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNP-KVLLCDQATSALDPATTRSILELLKDINRRLGLT 216
Query: 193 ILI 195
IL+
Sbjct: 217 ILL 219
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 27/213 (12%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYPKIQETF 701
L++V+ + G + G +G+GK+TLL ++AG TSG + GE
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE------------- 69
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTK-----ADCVNHVLKTIELDG 756
R GY + +I E+ F R+ ++ K D V V K +E G
Sbjct: 70 -RKKGYEIRRNIGIAFQYPEDQFFAE---RVFDEVAFAVKNFYPDRDPVPLVKKAMEFVG 125
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
+ LS +++R+ I +V P I+ +DEP GLD ++R V+
Sbjct: 126 LDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185
Query: 817 DTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849
G+T++ H + D +++L+ G ++
Sbjct: 186 TLGKTVILISHDIET-VINHVDRVVVLEKGKKV 217
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 29/229 (12%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYPK- 696
+ + LD V+ ++ G +T ++G +G+GK+TL++V+ G + G F+ + N P
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 697 -----IQETFVRVSGYCEQTDIHS-------PHITIEESLFFSAWLRLAPQINSKTKADC 744
I TF E T + + P + SLF+ W+ P+ + +
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI---PK-----EEEM 130
Query: 745 VNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARA 804
V K +E +K S + LS Q K + IG L+ NP +I MDEP G+
Sbjct: 131 VEKAFKILEF--LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 805 AAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
A + V + G T + H+ +DI ++ + + + G+II G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 29/229 (12%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYPK- 696
+ + LD V+ ++ G +T ++G +G+GK+TL++V+ G + G F+ + N P
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 697 -----IQETFVRVSGYCEQTDIHS-------PHITIEESLFFSAWLRLAPQINSKTKADC 744
I TF E T + + P + SLF+ W+ P+ + +
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI---PK-----EEEM 130
Query: 745 VNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARA 804
V K +E +K S + LS Q K + IG L+ NP +I MD+P G+
Sbjct: 131 VEKAFKILEF--LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGL 188
Query: 805 AAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
A + V + G T + H+ +DI ++ + + + G+II G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 29/229 (12%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYPK- 696
+ + LD V+ ++ G +T ++G +G+GK+TL++V+ G + G F+ + N P
Sbjct: 19 EFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 697 -----IQETFVRVSGYCEQTDIHS-------PHITIEESLFFSAWLRLAPQINSKTKADC 744
I TF E T + + P + SLF+ W+ P+ + +
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI---PK-----EEEM 130
Query: 745 VNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARA 804
V K +E +K S + LS Q K + IG L+ NP +I MDEP G+
Sbjct: 131 VEKAFKILEF--LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 805 AAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
A + V + G T + H+ +DI ++ + + + G+II G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 10/208 (4%)
Query: 653 LRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSG----YC 708
+ PG + A+MG +G+GK+TL LAGR+ G ++ G + + +G
Sbjct: 24 VHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMA 83
Query: 709 EQTDIHSPHITIEESLFFSAWLRLAPQINSK---TKADCVNHVLKTIELDGIKESLVGIP 765
Q + P ++ F L + + D + + + I L + E L+
Sbjct: 84 FQYPVEIPGVS--NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS 141
Query: 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCT 825
G S ++KR I V P + +DE +GLD A +V V ++ D R+ +
Sbjct: 142 VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIV 201
Query: 826 IHQPSIDIFESFDELILLKTGGRIIYSG 853
H I + D + +L GRI+ SG
Sbjct: 202 THYQRILDYIKPDYVHVLYQ-GRIVKSG 228
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 10/208 (4%)
Query: 653 LRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSG----YC 708
+ PG + A+MG +G+GK+TL LAGR+ G ++ G + + +G
Sbjct: 43 VHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMA 102
Query: 709 EQTDIHSPHITIEESLFFSAWLRLAPQINSK---TKADCVNHVLKTIELDGIKESLVGIP 765
Q + P ++ F L + + D + + + I L + E L+
Sbjct: 103 FQYPVEIPGVS--NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS 160
Query: 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCT 825
G S ++KR I V P + +DE +GLD A +V V ++ D R+ +
Sbjct: 161 VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIV 220
Query: 826 IHQPSIDIFESFDELILLKTGGRIIYSG 853
H I + D + +L GRI+ SG
Sbjct: 221 THYQRILDYIKPDYVHVLYQ-GRIVKSG 247
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 47/198 (23%), Positives = 91/198 (45%), Gaps = 18/198 (9%)
Query: 661 LMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG---YPKIQETFVRVSGYCEQTDIHSPH 717
L+G +GAGK+ L+++AG +GE+++NG P E R G+ Q PH
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADITPLPPER--RGIGFVPQDYALFPH 84
Query: 718 ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKR 777
+++ ++ + + + + + V + E GI L P + LS +R+R
Sbjct: 85 LSVYRNIAYG--------LRNVERVERDRRVREMAEKLGIAHLLDRKP--ARLSGGERQR 134
Query: 778 LTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESF 837
+ + LV P ++ +DEP + +D + ++M ++ V + + I+
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLA 194
Query: 838 DELILLKTGGRIIYSGPL 855
DE+ ++ GRI+ G L
Sbjct: 195 DEVAVM-LNGRIVEKGKL 211
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 95/220 (43%), Gaps = 33/220 (15%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNGYPKIQET 700
+Q+L +T TL PG +TAL+G +G+GK+T+ +L + +G G++ ++G P +
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG---GKVLLDGEPLV--- 84
Query: 701 FVRVSGYCEQTDIHSPHITI----EESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
Q D H H + +E L F R T+ + + G
Sbjct: 85 ---------QYDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESG 134
Query: 757 IKESLVGIP-------GVSG--LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAI 807
+ + G P G +G LS QR+ + + L+ P ++ +D T+ LDA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 808 VMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTG 846
V R + + RT++ Q + + E ++ LK G
Sbjct: 195 VQRLLYESPEWASRTVLLITQQ--LSLAERAHHILFLKEG 232
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 99/201 (49%), Gaps = 14/201 (6%)
Query: 656 GVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG--YPKIQETFVR-VSGYCEQTD 712
G AL+G +G+GK+T+ +L + +G+IK+ G K +R + G Q
Sbjct: 46 GTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGGKNVNKYNRNSIRSIIGIVPQDT 102
Query: 713 IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772
I TI+ ++ + ++ TK+ + ++ L +++VG G+ LS
Sbjct: 103 ILFNE-TIKYNILYGKLDATDEEVIKATKSAQLYDFIEA--LPKKWDTIVGNKGMK-LSG 158
Query: 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSID 832
+R+R+ I L+ +P I+ DE T+ LD++ + +AV+++ RT++ H+ S
Sbjct: 159 GERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN-RTLIIIAHRLS-- 215
Query: 833 IFESFDELILLKTGGRIIYSG 853
S + +ILL G+I+ G
Sbjct: 216 TISSAESIILLNK-GKIVEKG 235
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 128 DTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAH 187
DT+VG+ + +SGG+++R+ R +L P K + D+ T+ LD T + ++ L
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDP-KIVIFDEATSSLDSKTEYLFQKAVEDLRK 203
Query: 188 ITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEF 231
+ T++I + S T + IIL+ +GKI+ G + +L+
Sbjct: 204 --NRTLIIIAHRLS--TISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 33/220 (15%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNGYPKIQET 700
+Q+L +T TL PG +TAL+G +G+GK+T+ +L + +G G++ ++G P +
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG---GKVLLDGEPLV--- 84
Query: 701 FVRVSGYCEQTDIHSPHITI----EESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
Q D H H + +E L F R T+ + + G
Sbjct: 85 ---------QYDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESG 134
Query: 757 IKESLVGIP-------GVSG--LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAI 807
+ + G P G +G L+ QR+ + + L+ P ++ +D T+ LDA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 808 VMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTG 846
V R + + RT++ Q + + E ++ LK G
Sbjct: 195 VQRLLYESPEWASRTVLLITQQ--LSLAERAHHILFLKEG 232
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 30/220 (13%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCFKG-EIKVNGYPKI 697
L V+ ++ G AL+G SG+GK+T+ DV +G S C G +++ +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG---SICLDGHDVRDYKLTNL 415
Query: 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSA---WLRLAPQINSKTKADCVNHVLKTIE- 753
+ F VS ++H + TI ++ ++A + R QI + H ++ IE
Sbjct: 416 RRHFALVS-----QNVHLFNDTIANNIAYAAEGEYTR--EQIEQAARQ---AHAMEFIEN 465
Query: 754 LDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 813
+ ++++G G S LS QR+R+ I L+ + ++ +DE T+ LD + + A+
Sbjct: 466 MPQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALD 524
Query: 814 NVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
+ +T++ H+ S E DE IL+ G II G
Sbjct: 525 EL-QKNKTVLVIAHRLS--TIEQADE-ILVVDEGEIIERG 560
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 128 DTLVGDAIRRGISGGQKRRLTTGREMLV-GPIKAMFMDKITNGLDISTSFQIVTCLQHLA 186
DT++G+ +SGGQ++R+ R +L P+ + +D+ T+ LD + I L L
Sbjct: 471 DTVIGEN-GTSLSGGQRQRVAIARALLRDAPV--LILDEATSALDTESERAIQAALDELQ 527
Query: 187 HITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229
+ T+L+ + T D+I+++ EG+I+ G +L
Sbjct: 528 K--NKTVLV--IAHRLSTIEQADEILVVDEGEIIERGRHADLL 566
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 94/197 (47%), Gaps = 25/197 (12%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L V +++PG L A++G +G+GK+TL++++ + +G ++V+ E VR
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP--RLIDPERGRVEVD------ELDVRT 409
Query: 705 SGYCEQTDIHSPHITI--EESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLV 762
+ D+ HI+ +E++ FS ++ + + D + +++ ++ I + ++
Sbjct: 410 ---VKLKDLRG-HISAVPQETVLFSGTIKENLKWGREDATD--DEIVEAAKIAQIHDFII 463
Query: 763 GIP---------GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 813
+P G S Q++RL+I LV P ++ +D+ T+ +D ++ +K
Sbjct: 464 SLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLK 523
Query: 814 NVADTGRTIVCTIHQPS 830
T + T P+
Sbjct: 524 RYTKGCTTFIITQKIPT 540
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 137 RGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILIS 196
R SGGQK+RL+ R ++ P K + +D T+ +D T +I L L T
Sbjct: 478 RNFSGGQKQRLSIARALVKKP-KVLILDDCTSSVDPITEKRI---LDGLKRYTKGCTTFI 533
Query: 197 LLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
+ Q P T L D I+++ EGK+ G + +LE
Sbjct: 534 ITQKIP-TALLADKILVLHEGKVAGFGTHKELLE 566
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 95/199 (47%), Gaps = 19/199 (9%)
Query: 655 PGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCE--QTD 712
G AL+G SG+GK+T+ ++ + +GEI ++G+ + T + +
Sbjct: 368 AGKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQN 425
Query: 713 IHSPHITIEESLFFSAWLRLA-PQINSKTKA----DCVNHVLKTIELDGIKESLVGIPGV 767
+H + T+ ++ ++ + + QI + D +N ++D ++++G GV
Sbjct: 426 VHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFIN------KMDNGLDTVIGENGV 479
Query: 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIH 827
LS QR+R+ I L+ + I+ +DE T+ LD + + A+ + RT + H
Sbjct: 480 L-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKNRTSLVIAH 537
Query: 828 QPSIDIFESFDELILLKTG 846
+ S E DE+++++ G
Sbjct: 538 RLS--TIEKADEIVVVEDG 554
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 51/237 (21%)
Query: 3 SLNDRIGFGLSVISWFCT---GLVTGEVSYNGYKLEEFVPQKLS---AYVSQYDLHIPEM 56
+L R G G S I+ T + GE+ +G+ L E+ L A VSQ ++H+
Sbjct: 373 ALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQ-NVHLFND 431
Query: 57 TVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDY 116
TV + ++ Q SR I EE AR+ D
Sbjct: 432 TVANNIAYARTEQY--SREQI-------EEAARMAYAMDF-------------------- 462
Query: 117 NLKILGLDICADTLVGDAIRRGI--SGGQKRRLTTGREMLV-GPIKAMFMDKITNGLDIS 173
I +D DT++G+ G+ SGGQ++R+ R +L PI + +D+ T+ LD
Sbjct: 463 ---INKMDNGLDTVIGE---NGVLLSGGQRQRIAIARALLRDSPI--LILDEATSALDTE 514
Query: 174 TSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
+ I L L + ++ L T D+I+++ +G I+ G +LE
Sbjct: 515 SERAIQAALDELQKNRTSLVIAHRL----STIEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 24/177 (13%)
Query: 656 GVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIH- 714
G + L+G +GAGKTT L +AG + KG+I NG Q+ + + + I
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQ--KGKIIFNG----QDITNKPAHVINRXGIAL 85
Query: 715 -------SPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-DGIKESLVGIPG 766
P +T+ E+L A+ N K K + L +KE L + G
Sbjct: 86 VPEGRRIFPELTVYENLXXGAY-------NRKDKEGIKRDLEWIFSLFPRLKERLKQLGG 138
Query: 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIV 823
LS +++ L IG L + P ++ DEP+ GL + V ++ + G TI+
Sbjct: 139 T--LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 21/181 (11%)
Query: 635 RECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694
R+ + + +L+ +T T+ G + G +G GKTTLL ++ KGEI NG
Sbjct: 14 RDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGV 71
Query: 695 PKIQETFVRVSG---YCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKT 751
P +V G + + I I++E+ L A L K + + L++
Sbjct: 72 P-----ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASL-----YGVKVNKNEIMDALES 121
Query: 752 IELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA 811
+E+ +K+ L LS +R+ + L+ N I +D+P +D + V+++
Sbjct: 122 VEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS 175
Query: 812 V 812
+
Sbjct: 176 I 176
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 50/217 (23%), Positives = 103/217 (47%), Gaps = 31/217 (14%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNG--YPKIQETF 701
+L +T TLRPG +TAL+G +G+GK+T+ +L + +G G++ ++G P+ + +
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG---GQLLLDGKPLPQYEHRY 88
Query: 702 V--RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
+ +V+ ++ + +++E++ + L P + T A +K+ G
Sbjct: 89 LHRQVAAVGQEPQVFGR--SLQENIAYG--LTQKPTMEEITAA-----AVKS----GAHS 135
Query: 760 SLVGIP---------GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR 810
+ G+P S LS QR+ + + L+ P ++ +D+ T+ LDA + V +
Sbjct: 136 FISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 195
Query: 811 AVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847
+ + V I Q + + E D ++ L+ G
Sbjct: 196 LLYESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 84/200 (42%), Gaps = 35/200 (17%)
Query: 652 TLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGC---------------FKGEIKVNGYPK 696
T RPG + L+G +G GK+T L +LAG++ F+G N + K
Sbjct: 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158
Query: 697 IQETFVRVSGYCEQTD-----IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKT 751
+ E ++ + D I P + E L LR+ K+ D V +K
Sbjct: 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELL----KLRM-----EKSPED-VKRYIKI 208
Query: 752 IELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA 811
++L+ + + + LS + +R IG+ V + DEP++ LD + +
Sbjct: 209 LQLENVLKR-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQI 263
Query: 812 VKNVADTGRTIVCTIHQPSI 831
++++ + ++C H S+
Sbjct: 264 IRSLLAPTKYVICVEHDLSV 283
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 28/158 (17%)
Query: 658 LTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPH 717
+ +MG +G GKTTL+ +LAG + K+N K Q+ + G Q
Sbjct: 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQ------- 432
Query: 718 ITIEESLFFSAWLR--LAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775
LFF L PQ + V+K + +D I + V LS +
Sbjct: 433 ------LFFKKIRGQFLNPQFQT--------DVVKPLRIDDIIDQ-----EVQHLSGGEL 473
Query: 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 813
+R+ I + L I +DEP+ LD+ I + ++
Sbjct: 474 QRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 97/208 (46%), Gaps = 19/208 (9%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
L ++ + G AL+G SG+GK+T+ ++ + +G I ++G+ + T +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLR 416
Query: 706 GYCE--QTDIHSPHITIEESLFFSAWLRLA-PQINSKTKA----DCVNHVLKTIELDGIK 758
++H + T+ ++ ++ + QI + D +N ++D
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN------KMDNGL 470
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT 818
++++G GV LS QR+R+ I L+ + I+ +DE T+ LD + + A+ +
Sbjct: 471 DTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QK 528
Query: 819 GRTIVCTIHQPSIDIFESFDELILLKTG 846
RT + H+ S E DE+++++ G
Sbjct: 529 NRTSLVIAHRLS--TIEQADEIVVVEDG 554
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 123 LDICADTLVGDAIRRGI--SGGQKRRLTTGREMLV-GPIKAMFMDKITNGLDISTSFQIV 179
+D DT++G+ G+ SGGQ++R+ R +L PI + +D+ T+ LD + I
Sbjct: 466 MDNGLDTIIGE---NGVLLSGGQRQRIAIARALLRDSPI--LILDEATSALDTESERAIQ 520
Query: 180 TCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229
L L + ++ L T D+I+++ +G I+ G +L
Sbjct: 521 AALDELQKNRTSLVIAHRL----STIEQADEIVVVEDGIIVERGTHSELL 566
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 29/204 (14%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTS--GCFKGEIKVNGYPKIQETF 701
QL+ D G + G + ++G +G GKTT +L G T+ G E ++ Y K Q F
Sbjct: 283 QLVVD-NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIF 340
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
G +Q ++ +++L S+W V K + L + ES
Sbjct: 341 PNYDGTVQQYLENAS----KDALSTSSWF--------------FEEVTKRLNLHRLLES- 381
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT 821
V+ LS + ++L I L + +D+P++ LD IV +A+K V +
Sbjct: 382 ----NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437
Query: 822 IVCTI-HQPSIDIFESFDELILLK 844
+ I H SI + + D +I+ K
Sbjct: 438 VTFIIDHDLSIHDYIA-DRIIVFK 460
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 97/242 (40%), Gaps = 27/242 (11%)
Query: 652 TLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQT 711
T + + ++G +G GKTT+L +LAG KV G ++ + F Y
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV-GKDEVLKRFRGKEIYNYFK 79
Query: 712 DIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG-- 769
+++S + I + + + SK VN +L I+ G K+ + + ++
Sbjct: 80 ELYSNELKIVHKIQYVEYA-------SKFLKGTVNEILTKIDERGKKDEVKELLNMTNLW 132
Query: 770 ------LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIV 823
LS +RL + L+ + D+P++ LD R + +A++ + IV
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192
Query: 824 CTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPAT 883
+ + + +LI + G +Y ++++RV G+ Y PA
Sbjct: 193 V---DHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARV--------GINNFLKGYLPAE 241
Query: 884 WM 885
M
Sbjct: 242 NM 243
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 18/142 (12%)
Query: 774 QRKRLT--IGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSI 831
QR RL IG LV + +DEP+ GL R ++ + + D G T++ H
Sbjct: 528 QRIRLATQIGSGLVG--VLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE-- 583
Query: 832 DIFESFDELILL-----KTGGRIIYSGP----LGNHSSRVIEYFEGIPG--VPQIRNNYN 880
D E D ++ + + GGRI++SGP L N S Y G +P IR + +
Sbjct: 584 DTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAYLSGRESIEIPAIRRSVD 643
Query: 881 PATWMLEVTSASTEAELGLDFS 902
P L V A G+D S
Sbjct: 644 P-RRQLTVVGAREHNLRGIDVS 664
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 8/52 (15%)
Query: 656 GVLTALMGVSGAGKTTLL-DVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSG 706
GVLT++ GVSG+GK+TL+ D+LA + ++NG ++ RV+G
Sbjct: 668 GVLTSVTGVSGSGKSTLVNDILAAVLAN-------RLNGARQVPGRHTRVTG 712
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 745 VNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPS---IIFMDEPTTGLD 801
V+ L+T+ G+ +G P + LS + +R+ + EL + + +DEPTTGL
Sbjct: 840 VHRYLRTLVDVGLGYVRLGQPAPT-LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLH 898
Query: 802 ARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843
++ + + D G T++ H ++D+ ++ D +I L
Sbjct: 899 FDDIRKLLNVINGLVDKGNTVIVIEH--NLDVIKTSDWIIDL 938
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 24/164 (14%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY------PKIQE 699
LD+++ + G ++G +GAGKT L+++AG G I ++G P+ +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS--GRILLDGKDVTDLSPEKHD 73
Query: 700 TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
+ Q PH+ ++++L F ++ K VL T I+
Sbjct: 74 I-----AFVYQNYSLFPHMNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEH 119
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
L P LS +++R+ + LV NP I+ +DEP + LD R
Sbjct: 120 LLDRNPLT--LSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQP 829
LS + +R+ I L+ F DEP++ LD R V R ++ +A+ G+ ++ H
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288
Query: 830 SI-DIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEG 868
++ D ++ + G I+S P G + + E+ +G
Sbjct: 289 AVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNG-INEFLQG 327
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 96/258 (37%), Gaps = 50/258 (19%)
Query: 612 FQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDV--------TGTLRPGVLTALMG 663
F+P + F L +D E L +L+ D G +R G + ++G
Sbjct: 336 FRPYEIRFTKLSERVDVERET------LVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVG 389
Query: 664 VSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIE 721
+G GKTT + +LAG T G + ++ V P+ + + Y + I S +
Sbjct: 390 PNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLN-- 447
Query: 722 ESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIG 781
S F+ L L P L I+L V LS + +R+ I
Sbjct: 448 -SNFYKTEL-LKP--------------LGIIDLYD--------RNVEDLSGGELQRVAIA 483
Query: 782 VELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELI 841
L+ + I +DEP+ LD V RA++++ + + + I D L
Sbjct: 484 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL- 542
Query: 842 LLKTGGRIIYSGPLGNHS 859
I++ G G H
Sbjct: 543 -------IVFEGEPGRHG 553
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQP 829
LS + +R+ I L+ F DEP++ LD R V R ++ +A+ G+ ++ H
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
Query: 830 SI-DIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEG 868
++ D ++ + G I+S P G + + E+ +G
Sbjct: 275 AVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNG-INEFLQG 313
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 96/258 (37%), Gaps = 50/258 (19%)
Query: 612 FQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDV--------TGTLRPGVLTALMG 663
F+P + F L +D E L +L+ D G +R G + ++G
Sbjct: 322 FRPYEIRFTKLSERVDVERET------LVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVG 375
Query: 664 VSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIE 721
+G GKTT + +LAG T G + ++ V P+ + + Y + I S +
Sbjct: 376 PNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLN-- 433
Query: 722 ESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIG 781
S F+ L L P L I+L V LS + +R+ I
Sbjct: 434 -SNFYKTEL-LKP--------------LGIIDLYD--------RNVEDLSGGELQRVAIA 469
Query: 782 VELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELI 841
L+ + I +DEP+ LD V RA++++ + + + I D L
Sbjct: 470 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL- 528
Query: 842 LLKTGGRIIYSGPLGNHS 859
I++ G G H
Sbjct: 529 -------IVFEGEPGRHG 539
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 23/209 (11%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L D+ + G L A+ G +GAGKT+LL ++ G +G+IK +G R+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 83
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764
S +C Q P TI+E++ F + + K E D I ++G
Sbjct: 84 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNI---VLGE 138
Query: 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNVADTGRTI 822
G++ LS QR R+++ + + + +D P LD + + K +A+ R +
Sbjct: 139 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 197
Query: 823 VCTIHQPSIDIFESFDELILLKTGGRIIY 851
V + ++ + D++++L G Y
Sbjct: 198 VTS----KMEHLKKADKILILHEGSSYFY 222
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 79/189 (41%), Gaps = 23/189 (12%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG--YPKIQ-ETF 701
+L++++ ++ PG L+G +G+GK+TLL + +GEI+++G + I E +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT---EGEIQIDGVSWDSITLEQW 92
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
+ G Q + FS R N+ + V + L + E
Sbjct: 93 RKAFGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQF 141
Query: 762 VG------IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815
G + G LS ++ + + +++ I+ +DEP+ LD I+ R +K
Sbjct: 142 PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201
Query: 816 ADTGRTIVC 824
I+C
Sbjct: 202 FADCTVILC 210
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 36/213 (16%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
L+ +T ++ G L A++G G GK++LL L KV G+ I+ + V
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--------KVEGHVAIKGSVAYVP 72
Query: 706 GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE-LDGIKESLVGI 764
+Q I + ++ E++ F L P S +A C +L +E L + +G
Sbjct: 73 ---QQAWIQND--SLRENILFGCQLE-EPYYRSVIQA-CA--LLPDLEILPSGDRTEIGE 123
Query: 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTG----R 820
GV+ LS Q++R+++ + +N I D+P + +DA + V + G +
Sbjct: 124 KGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV--IGPKGMLKNK 180
Query: 821 TIVCTIHQ----PSIDIFESFDELILLKTGGRI 849
T + H P +D+ I++ +GG+I
Sbjct: 181 TRILVTHSMSYLPQVDV-------IIVMSGGKI 206
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 23/209 (11%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L D+ + G L A+ G +GAGKT+LL ++ G +G+IK +G R+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764
S +C Q P TI+E++ F + + K E D I ++G
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNI---VLGE 126
Query: 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNVADTGRTI 822
G++ LS QR R+++ + + + +D P LD + + K +A+ R +
Sbjct: 127 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 185
Query: 823 VCTIHQPSIDIFESFDELILLKTGGRIIY 851
V + ++ + D++++L G Y
Sbjct: 186 VTS----KMEHLKKADKILILHEGSSYFY 210
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 718 ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKR 777
+T+E++L F A + P+I K L+T+ G+ +G P + LS + +R
Sbjct: 807 MTVEDALDFFASI---PKIKRK---------LETLYDVGLGYMKLGQPATT-LSGGEAQR 853
Query: 778 LTIGVEL---VANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIF 834
+ + EL ++ +DEPTTGL A ++ + + D G T++ H ++D+
Sbjct: 854 VKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDVI 911
Query: 835 ESFDELILL-----KTGGRIIYSG 853
++ D +I L GG+I+ G
Sbjct: 912 KTADYIIDLGPEGGDRGGQIVAVG 935
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 11/127 (8%)
Query: 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDI 833
QR RL + + +DEP+ GL R ++ +K++ D G T++ H D
Sbjct: 511 QRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE--DT 568
Query: 834 FESFDELILLKT-----GGRIIYSGP----LGNHSSRVIEYFEGIPGVPQIRNNYNPATW 884
+ D LI + GG ++ +G + + +S +Y G +P P
Sbjct: 569 MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPAERRRPDGR 628
Query: 885 MLEVTSA 891
LEV A
Sbjct: 629 WLEVVGA 635
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 23/143 (16%)
Query: 719 TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRL 778
T+E++L F A + P+I K L+T+ G+ +G P + LS + +R+
Sbjct: 808 TVEDALDFFASI---PKIKRK---------LETLYDVGLGYXKLGQPATT-LSGGEAQRV 854
Query: 779 TIGVEL--VANPSIIF-MDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFE 835
+ EL +N ++ +DEPTTGL A ++ + + D G T++ H ++D+ +
Sbjct: 855 KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDVIK 912
Query: 836 SFDELILL-----KTGGRIIYSG 853
+ D +I L GG+I+ G
Sbjct: 913 TADYIIDLGPEGGDRGGQIVAVG 935
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L D+ + G L A+ G +GAGKT+LL ++ G +G+IK +G R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKA-DCVNHVLKTIELDGIKESLVG 763
S +C Q P TI+E++ ++ + S KA + K E D I ++G
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEY--RYRSVIKACQLEEDISKFAEKDNI---VLG 154
Query: 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNVADTGRT 821
G++ LS QR R+++ + + + +D P LD + + K +A+ R
Sbjct: 155 EGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 822 IVCTIHQPSIDIFESFDELILLKTGGRIIY 851
+V + ++ + D++++L G Y
Sbjct: 214 LVTS----KMEHLKKADKILILHEGSSYFY 239
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 37.4 bits (85), Expect = 0.048, Method: Composition-based stats.
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 21/168 (12%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGCF----KGEIKVNGYPKIQ 698
+L ++ + G L G++GAGKTTLL++L + TSG K KV GY
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKV-GYSA-- 92
Query: 699 ETFVRVSGYCEQTDIHSPH-----ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE 753
ET + G+ + + I + S F + + + I+ + + + + +LK +
Sbjct: 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS-IGVYQDIDDEIRNE-AHQLLKLVG 150
Query: 754 LDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
+ +G LST +++R+ I L P ++ +DEP GLD
Sbjct: 151 XSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 770 LSTEQRKRLTIGVELVAN--PSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIH 827
LS + +RL + +L +N + +DEP+ GL ++ A++N+ G ++ H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 828 QPSIDIFESFDELILL-----KTGGRIIYSGP 854
+D+ D L+ + + GG I+YSGP
Sbjct: 440 --DLDVIRRADWLVDVGPEAGEKGGEILYSGP 469
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 747 HVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANP---SIIFMDEPTTGLDAR 803
L T+ G+ +G P LS + +R+ + EL + ++ +DEPTTGL
Sbjct: 709 RALDTLREVGLGYLRLGQPATE-LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPA 767
Query: 804 AAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL-----KTGGRIIYSG 853
+ R + + D G T++ H+ + + + D ++ + + GGR++ G
Sbjct: 768 DVERLQRQLVKLVDAGNTVIAVEHK--MQVVAASDWVLDIGPGAGEDGGRLVAQG 820
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 23/144 (15%)
Query: 718 ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKR 777
+T+E++L F A + P+I K L+T+ G+ +G P + LS + +R
Sbjct: 505 MTVEDALDFFASI---PKIKRK---------LETLYDVGLGYMKLGQPATT-LSGGEAQR 551
Query: 778 LTIGVEL--VANPSIIF-MDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIF 834
+ + EL +N ++ +DEPTTGL A ++ + + D G T++ H ++D+
Sbjct: 552 VKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDVI 609
Query: 835 ESFDELILL-----KTGGRIIYSG 853
++ D +I L GG+I+ G
Sbjct: 610 KTADYIIDLGPEGGDRGGQIVAVG 633
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 11/127 (8%)
Query: 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDI 833
QR RL + + +DEP+ GL R ++ +K++ D G T++ H D
Sbjct: 209 QRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE--DT 266
Query: 834 FESFDELILLKT-----GGRIIYSGP----LGNHSSRVIEYFEGIPGVPQIRNNYNPATW 884
+ D LI + GG ++ +G + + +S +Y G +P P
Sbjct: 267 MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPAERRRPDGR 326
Query: 885 MLEVTSA 891
LEV A
Sbjct: 327 WLEVVGA 333
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L D+ + G L A+ G +GAGKT+LL ++ G +G+IK +G R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKA-DCVNHVLKTIELDGIKESLVG 763
S +C Q P TI+E++ ++ + S KA + K E D I ++G
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEY--RYRSVIKACQLEEDISKFAEKDNI---VLG 154
Query: 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNVADTGRT 821
G++ LS QR R+++ + + + +D P LD + + K +A+ R
Sbjct: 155 EGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 822 IVCTIHQPSIDIFESFDELILLKTGGRIIY 851
+V + ++ + D++++L G Y
Sbjct: 214 LVTS----KMEHLKKADKILILHEGSSYFY 239
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L D+ + G L A+ G +GAGKT+LL ++ G +G+IK +G R+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKA-DCVNHVLKTIELDGIKESLVG 763
S +C Q P TI+E++ ++ + S KA + K E D I ++G
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIGVSYDEY--RYRSVIKACQLEEDISKFAEKDNI---VLG 124
Query: 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNVADTGRT 821
G++ LS QR R+++ + + + +D P LD + + K +A+ R
Sbjct: 125 EGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 183
Query: 822 IVCTIHQPSIDIFESFDELILLKTGGRIIY 851
+V + ++ + D++++L G Y
Sbjct: 184 LVTS----KMEHLKKADKILILHEGSSYFY 209
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Query: 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQP 829
L++E RKR T ++ +DEPT GL ++ + + D G T++ H
Sbjct: 816 LASELRKRDT-------GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEH-- 866
Query: 830 SIDIFESFDELILL-----KTGGRIIYSG 853
++D+ ++ D +I L K GG I+ +G
Sbjct: 867 NLDVIKNADHIIDLGPEGGKEGGYIVATG 895
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSI 831
QR RL + I +DEPT GL R +++ +K + D G T++ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
>pdb|3SOJ|A Chain A, Francisella Tularensis Pilin Pile
pdb|3SOJ|B Chain B, Francisella Tularensis Pilin Pile
Length = 115
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 154 LVGPIKAMFMDKITNGLDIS-TSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDII 212
++G +KA + I N LDIS ++ T + + ATI I+L Q SP+ F +DII
Sbjct: 16 IIGNVKASIQNDINNNLDISQQTYDTPTGVTVTGSTSGATIDINLSQTSPQHFTNDNDII 75
Query: 213 LMA 215
++
Sbjct: 76 RLS 78
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 45/199 (22%), Positives = 89/199 (44%), Gaps = 29/199 (14%)
Query: 661 LMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP--KIQETFVRVSGYCEQTDIHSPHI 718
++G +G+GKTTLL ++G + G I +NG KI+ ++R S + + +
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIR-NYIRYS--TNLPEAYEIGV 88
Query: 719 TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL--DGIKESLVGIPGVSGLSTEQRK 776
T+ + ++ L+ D +LK ++L + ++ L LS Q
Sbjct: 89 TVNDIVYLYEELK-------GLDRDLFLEMLKALKLGEEILRRKLY------KLSAGQSV 135
Query: 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFES 836
+ + L + P I+ +DEP +DA ++ R +K G I+ T +++++
Sbjct: 136 LVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG--ILVTHELDMLNLYKE 193
Query: 837 FDELILLKTGGRIIYSGPL 855
+ L+ G R+ GP+
Sbjct: 194 YKAYFLV--GNRL--QGPI 208
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 23/209 (11%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L ++ + G + A+ G +G+GKT+LL ++ G + +G IK +G RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764
S +C Q P TI+E++ F + + K E D +++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD---NTVLGE 156
Query: 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNVADTGRTI 822
GV+ LS QR R+++ + + + +D P LD V + K +A+ R +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 823 VCTIHQPSIDIFESFDELILLKTGGRIIY 851
V + ++ D++++L G Y
Sbjct: 216 VTS----KMEHLRKADKILILHQGSSYFY 240
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 23/209 (11%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L ++ + G + A+ G +G+GKT+LL ++ G + +G IK +G RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764
S +C Q P TI+E++ F + + K E D +++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD---NTVLGE 156
Query: 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNVADTGRTI 822
GV+ LS QR R+++ + + + +D P LD V + K +A+ R +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 823 VCTIHQPSIDIFESFDELILLKTGGRIIY 851
V + ++ D++++L G Y
Sbjct: 216 VTS----KMEHLRKADKILILHQGSSYFY 240
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 23/209 (11%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L D+ + G L A+ G +GAGKT+LL ++ G +G+IK +G R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764
S +C Q P TI+E++ + + K E D I ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNI---VLGE 156
Query: 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNVADTGRTI 822
G++ LS QR R+++ + + + +D P LD + + K +A+ R +
Sbjct: 157 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 823 VCTIHQPSIDIFESFDELILLKTGGRIIY 851
V + ++ + D++++L G Y
Sbjct: 216 VTS----KMEHLKKADKILILHEGSSYFY 240
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 28/221 (12%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG------YPKIQ 698
L++DV+ + G + A++G +GAGK+TLL +L G + GE + G PK
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS--HGECHLLGQNLNSWQPK-- 81
Query: 699 ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK 758
R Q + ++ E + + AP S+ + + V+ + +
Sbjct: 82 -ALARTRAVMRQYSELAFPFSVSEVI----QMGRAPYGGSQDR-QALQQVMAQTDCLALA 135
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELV------ANPSIIFMDEPTTGLDARAAAIVMRAV 812
+ + LS +++R+ + L P +F+DEPT+ LD +R +
Sbjct: 136 QRDYRV-----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLL 190
Query: 813 KNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
+ + VC + +++ + + I+L G+++ G
Sbjct: 191 RQLTRQEPLAVCCVLH-DLNLAALYADRIMLLAQGKLVACG 230
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 92/209 (44%), Gaps = 23/209 (11%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L D+ + G L A+ G +GAGKT+LL ++ G +G+IK +G R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764
S +C Q P TI+E++ F + + K E D I ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNI---VLGE 156
Query: 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNVADTGRTI 822
G++ LS Q+ ++++ + + + +D P LD + + K +A+ R +
Sbjct: 157 GGIT-LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 823 VCTIHQPSIDIFESFDELILLKTGGRIIY 851
V + ++ + D++++L G Y
Sbjct: 216 VTS----KMEHLKKADKILILHEGSSYFY 240
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815
G+ +V + GLS Q+ +L + P +I +DEPT LD + + +A+K
Sbjct: 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
Query: 816 ADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
G I+ T S + ++ E + GR+ SG
Sbjct: 948 --EGGVIIIT---HSAEFTKNLTEEVWAVKDGRMTPSG 980
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 28/158 (17%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
LL+ L+ + G +G GK+TL+ +A + V+G+P +E
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ----------VDGFPTQEECR--- 496
Query: 705 SGYCEQTDIHSPHI-TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVG 763
+ Y E DI H T F + + I K IE G + ++
Sbjct: 497 TVYVEH-DIDGTHSDTSVLDFVFESGVGTKEAIKDKL-----------IEF-GFTDEMIA 543
Query: 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
+P +S LS + +L + ++ N I+ +DEPT LD
Sbjct: 544 MP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate
Regulatory Protein (Bt4638) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 31/48 (64%)
Query: 793 MDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDEL 840
MD+ G+++ A IV+ + ++++G+ + IH+ +I+I ++ DEL
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDEL 150
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 26/210 (12%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L ++ + G + A+ G +G+GKT+LL ++ G + +G IK +G RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKA-DCVNHVLKTIELDGIKESLVG 763
S +C Q P TI+E++ ++ + S KA + K E D +++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSYDEY--RYKSVVKACQLQQDITKFAEQD---NTVLG 154
Query: 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNVADTGRT 821
GV+ LS QR R+++ + + + +D P LD V + K +A+ R
Sbjct: 155 EGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 213
Query: 822 IVCTIHQPSIDIFESFDELILLKTGGRIIY 851
+V + ++ D++++L G Y
Sbjct: 214 LVTS----KMEHLRKADKILILHQGSSYFY 239
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 813
G+ +V + GLS Q+ +L + P +I +DEPT LD + + +A+K
Sbjct: 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 945
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L D+ + G L A+ G +GAGKT+LL ++ G +G+IK +G R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKA-DCVNHVLKTIELDGIKESLVG 763
S +C Q P TI+E++ ++ + S KA + K E D I ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSYDEY--RYRSVIKACQLEEDISKFAEKDNI---VLG 154
Query: 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNVADTGRT 821
G++ LS Q+ ++++ + + + +D P LD + + K +A+ R
Sbjct: 155 EGGIT-LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 822 IVCTIHQPSIDIFESFDELILLKTGGRIIY 851
+V + ++ + D++++L G Y
Sbjct: 214 LVTS----KMEHLKKADKILILHEGSSYFY 239
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 813
G+ +V + GLS Q+ +L + P +I +DEPT LD + + +A+K
Sbjct: 882 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 939
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 34/216 (15%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L ++ + G + A+ G +G+GKT+LL ++ G + +G IK +G RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKA-DCVNHVLKTIELDGIKESLVG 763
S +C Q P TI+E++ S + S KA + K E D +++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENI-ISGVSYDEYRYKSVVKACQLQQDITKFAEQD---NTVLG 155
Query: 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNVADTGRT 821
GV+ LS QR R+++ + + + +D P LD V + K +A+ R
Sbjct: 156 EGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 822 IVCT-------------IHQPSIDIFESFDELILLK 844
+V + +HQ S + +F EL L+
Sbjct: 215 LVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLR 250
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR 810
LS ++R+ I + L+ +P ++ +DEPT+ LD A +++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 23/209 (11%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L ++ + G + A+ G +G+GKT+LL ++ G + +G IK +G RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764
S +C Q P TI+E++ + + K E D +++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQD---NTVLGE 156
Query: 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNVADTGRTI 822
GV+ LS QR R+++ + + + +D P LD V + K +A+ R +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 823 VCTIHQPSIDIFESFDELILLKTGGRIIY 851
V + ++ D++++L G Y
Sbjct: 216 VTS----KMEHLRKADKILILHQGSSYFY 240
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 125 ICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQH 184
I D++ D SGG + + TG +L GP A+ + G ++ ++V
Sbjct: 192 ITLDSITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSS 251
Query: 185 LAHITDATILISLLQ-P-SPETFHLFDD 210
+A + D I+ +Q P SP + L DD
Sbjct: 252 IASLPDIVFTINGVQYPLSPSAYILQDD 279
>pdb|3D59|A Chain A, Crystal Structure Of Human Plasma Platelet Activating Factor
Acetylhydrolase
pdb|3D59|B Chain B, Crystal Structure Of Human Plasma Platelet Activating Factor
Acetylhydrolase
pdb|3D5E|A Chain A, Crystal Structure Of Human Plasma Platelet Activating Factor
Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3D5E|B Chain B, Crystal Structure Of Human Plasma Platelet Activating Factor
Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3F97|A Chain A, Crystal Structure Of Human Plasma Platelet Activating Factor
Acetylhydrolase Covalently Inhibited By Soman
pdb|3F97|B Chain B, Crystal Structure Of Human Plasma Platelet Activating Factor
Acetylhydrolase Covalently Inhibited By Soman
pdb|3F98|A Chain A, Crystal Structure Of Human Plasma Platelet Activating Factor
Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|B Chain B, Crystal Structure Of Human Plasma Platelet Activating Factor
Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|C Chain C, Crystal Structure Of Human Plasma Platelet Activating Factor
Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F9C|A Chain A, Crystal Structure Of Human Plasma Platelet Activating Factor
Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
pdb|3F9C|B Chain B, Crystal Structure Of Human Plasma Platelet Activating Factor
Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
Length = 383
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1158 GDIDKEIMVFIENKTIASFLEEYFGFHHD 1186
GDID + + + NK +FL+++ G H D
Sbjct: 327 GDIDSNVAIDLSNKASLAFLQKHLGLHKD 355
>pdb|3F96|A Chain A, Crystal Structure Of Human Plasma Platelet Activating Factor
Acetylhydrolase Covalently Inhibited By Sarin
pdb|3F96|B Chain B, Crystal Structure Of Human Plasma Platelet Activating Factor
Acetylhydrolase Covalently Inhibited By Sarin
Length = 383
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1158 GDIDKEIMVFIENKTIASFLEEYFGFHHD 1186
GDID + + + NK +FL+++ G H D
Sbjct: 327 GDIDSNVAIDLSNKASLAFLQKHLGLHKD 355
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,881,768
Number of Sequences: 62578
Number of extensions: 1376293
Number of successful extensions: 4180
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 3923
Number of HSP's gapped (non-prelim): 229
length of query: 1218
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1108
effective length of database: 8,089,757
effective search space: 8963450756
effective search space used: 8963450756
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)