Query 000937
Match_columns 1218
No_of_seqs 601 out of 4514
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 11:09:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 100.0 2E-196 5E-201 1779.5 73.9 1172 2-1218 144-1387(1391)
2 PLN03140 ABC transporter G fam 100.0 5E-187 1E-191 1828.4 119.9 1207 3-1218 195-1470(1470)
3 TIGR00956 3a01205 Pleiotropic 100.0 7E-166 2E-170 1638.3 116.6 1156 4-1217 92-1393(1394)
4 KOG0061 Transporter, ABC super 100.0 4.4E-96 1E-100 896.9 58.2 583 613-1218 22-612 (613)
5 PLN03211 ABC transporter G-25; 100.0 1.2E-94 2.5E-99 894.3 64.7 584 613-1215 36-659 (659)
6 TIGR00955 3a01204 The Eye Pigm 100.0 2E-94 4.3E-99 895.2 60.0 567 641-1218 36-617 (617)
7 TIGR00956 3a01205 Pleiotropic 100.0 7.8E-92 1.7E-96 931.8 63.6 592 613-1215 26-695 (1394)
8 PLN03140 ABC transporter G fam 100.0 6.9E-91 1.5E-95 917.0 60.9 594 613-1215 128-790 (1470)
9 KOG0065 Pleiotropic drug resis 100.0 5.2E-85 1.1E-89 800.6 40.0 566 641-1216 126-732 (1391)
10 KOG0055 Multidrug/pheromone ex 100.0 1.4E-76 2.9E-81 729.4 36.6 753 4-856 384-1209(1228)
11 KOG0061 Transporter, ABC super 100.0 1.4E-73 3E-78 698.7 37.4 512 4-565 61-608 (613)
12 TIGR00955 3a01204 The Eye Pigm 100.0 3.6E-68 7.8E-73 660.3 43.0 517 4-564 56-612 (617)
13 PLN03211 ABC transporter G-25; 100.0 1.5E-65 3.2E-70 635.0 43.5 508 4-565 99-658 (659)
14 TIGR01257 rim_protein retinal- 100.0 5.8E-62 1.3E-66 641.1 61.2 217 616-856 1937-2155(2272)
15 PTZ00265 multidrug resistance 100.0 8.4E-62 1.8E-66 645.2 37.5 217 616-856 1165-1448(1466)
16 COG1123 ATPase components of v 100.0 1E-57 2.2E-62 528.7 40.9 450 4-855 40-514 (539)
17 PLN03130 ABC transporter C fam 100.0 1.2E-57 2.6E-62 611.2 37.7 213 615-857 1236-1458(1622)
18 PRK13549 xylose transporter AT 100.0 1E-56 2.2E-61 548.8 39.8 438 4-858 36-492 (506)
19 PLN03232 ABC transporter C fam 100.0 1.8E-56 3.9E-61 600.8 43.6 212 616-857 1234-1455(1495)
20 PRK09700 D-allose transporter 100.0 3.1E-56 6.7E-61 545.5 39.1 437 4-855 36-493 (510)
21 PRK10762 D-ribose transporter 100.0 5.7E-56 1.2E-60 541.5 39.5 429 4-857 35-481 (501)
22 PRK15134 microcin C ABC transp 100.0 5.2E-56 1.1E-60 545.5 37.9 202 643-855 299-510 (529)
23 TIGR03269 met_CoM_red_A2 methy 100.0 2.1E-55 4.5E-60 539.5 42.2 217 617-855 280-512 (520)
24 PRK10261 glutathione transport 100.0 1.7E-55 3.8E-60 547.5 41.8 227 616-856 313-549 (623)
25 PRK15439 autoinducer 2 ABC tra 100.0 2.9E-55 6.3E-60 535.4 39.8 433 4-857 42-489 (510)
26 TIGR02633 xylG D-xylose ABC tr 100.0 6.5E-55 1.4E-59 533.0 41.0 221 617-856 258-488 (500)
27 PRK11288 araG L-arabinose tran 100.0 1.3E-54 2.8E-59 529.6 37.7 206 644-858 267-483 (501)
28 TIGR00957 MRP_assoc_pro multi 100.0 2.8E-54 6E-59 580.5 38.7 213 615-857 1283-1505(1522)
29 PRK10982 galactose/methyl gala 100.0 1.8E-53 3.9E-58 518.7 39.8 429 4-856 29-476 (491)
30 PTZ00243 ABC transporter; Prov 100.0 1.6E-52 3.6E-57 561.3 43.9 212 615-856 1307-1529(1560)
31 PRK10938 putative molybdenum t 100.0 2.2E-52 4.8E-57 509.4 34.9 216 616-854 260-486 (490)
32 KOG0054 Multidrug resistance-a 100.0 1E-50 2.2E-55 513.6 46.4 214 614-857 1136-1359(1381)
33 TIGR01271 CFTR_protein cystic 100.0 2.7E-51 5.9E-56 549.7 43.6 212 615-857 1216-1437(1490)
34 COG4172 ABC-type uncharacteriz 100.0 5.8E-51 1.3E-55 441.5 36.9 229 615-856 275-512 (534)
35 PRK15064 ABC transporter ATP-b 100.0 1.5E-49 3.3E-54 488.3 40.9 198 616-855 319-520 (530)
36 PRK11819 putative ABC transpor 100.0 3.2E-49 7E-54 486.7 43.2 201 616-854 324-527 (556)
37 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.8E-49 8.2E-54 486.2 42.5 201 616-854 322-525 (552)
38 PRK13409 putative ATPase RIL; 100.0 3.7E-48 8E-53 474.2 35.3 211 616-869 340-554 (590)
39 COG1126 GlnQ ABC-type polar am 100.0 1.7E-47 3.8E-52 386.4 23.3 216 616-856 2-221 (240)
40 PRK10636 putative ABC transpor 100.0 3.5E-46 7.7E-51 464.1 40.2 198 616-856 312-513 (638)
41 PRK11147 ABC transporter ATPas 100.0 3.1E-45 6.7E-50 457.3 42.8 202 616-855 319-523 (635)
42 PLN03073 ABC transporter F fam 100.0 9.9E-45 2.1E-49 451.2 35.4 200 616-855 508-709 (718)
43 COG1129 MglA ABC-type sugar tr 100.0 3.4E-43 7.4E-48 405.5 36.9 431 4-857 39-487 (500)
44 COG1127 Ttg2A ABC-type transpo 100.0 1.4E-44 3.1E-49 371.1 22.6 231 615-870 7-249 (263)
45 COG1125 OpuBA ABC-type proline 100.0 1.6E-44 3.5E-49 371.3 19.3 215 617-857 2-222 (309)
46 COG1135 AbcC ABC-type metal io 100.0 3.1E-44 6.8E-49 381.2 21.6 220 617-857 2-228 (339)
47 COG1116 TauB ABC-type nitrate/ 100.0 1E-43 2.2E-48 371.9 23.2 203 616-845 3-206 (248)
48 COG1120 FepC ABC-type cobalami 100.0 1.5E-43 3.2E-48 379.2 22.4 219 616-857 2-225 (258)
49 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.2E-43 6.9E-48 374.3 24.8 220 615-858 3-225 (254)
50 COG1131 CcmA ABC-type multidru 100.0 4.1E-43 8.8E-48 394.6 25.7 215 616-855 4-221 (293)
51 COG3638 ABC-type phosphate/pho 100.0 2.1E-43 4.5E-48 361.6 19.8 223 616-860 3-237 (258)
52 COG1136 SalX ABC-type antimicr 100.0 1.1E-42 2.4E-47 365.3 24.8 209 617-848 2-219 (226)
53 COG4555 NatA ABC-type Na+ tran 100.0 2.5E-43 5.5E-48 350.2 16.1 203 643-857 15-219 (245)
54 COG3839 MalK ABC-type sugar tr 100.0 1.3E-42 2.9E-47 386.1 22.7 216 616-857 3-220 (338)
55 COG1118 CysA ABC-type sulfate/ 100.0 8.4E-43 1.8E-47 369.1 18.8 206 642-857 14-224 (345)
56 COG3842 PotA ABC-type spermidi 100.0 2.4E-42 5.2E-47 386.1 20.7 218 615-857 4-223 (352)
57 COG2884 FtsE Predicted ATPase 100.0 7.4E-42 1.6E-46 337.2 20.5 212 617-854 2-220 (223)
58 COG0488 Uup ATPase components 100.0 5.8E-40 1.3E-44 390.3 35.7 191 614-845 319-511 (530)
59 COG1117 PstB ABC-type phosphat 100.0 1.8E-41 4E-46 340.5 19.1 219 615-856 6-233 (253)
60 COG3845 ABC-type uncharacteriz 100.0 3.3E-39 7.2E-44 363.1 37.2 437 4-858 35-490 (501)
61 PRK13537 nodulation ABC transp 100.0 2E-40 4.3E-45 376.8 26.7 216 615-856 6-223 (306)
62 COG3840 ThiQ ABC-type thiamine 100.0 7.4E-41 1.6E-45 326.8 18.5 197 648-856 17-215 (231)
63 COG1137 YhbG ABC-type (unclass 100.0 7.9E-42 1.7E-46 339.2 11.7 206 642-857 16-225 (243)
64 TIGR01257 rim_protein retinal- 100.0 1.5E-36 3.4E-41 401.3 63.4 218 614-856 926-1145(2272)
65 TIGR02314 ABC_MetN D-methionin 100.0 9E-40 1.9E-44 373.8 27.8 218 617-856 2-226 (343)
66 PRK11650 ugpC glycerol-3-phosp 100.0 7.9E-40 1.7E-44 377.7 26.4 217 616-857 3-221 (356)
67 TIGR03265 PhnT2 putative 2-ami 100.0 1E-39 2.2E-44 376.3 26.5 216 616-857 4-221 (353)
68 cd03261 ABC_Org_Solvent_Resist 100.0 1.1E-39 2.4E-44 359.2 25.4 213 618-855 2-221 (235)
69 PRK11432 fbpC ferric transport 100.0 1.3E-39 2.8E-44 374.7 26.4 216 616-857 6-223 (351)
70 TIGR03258 PhnT 2-aminoethylpho 100.0 1.4E-39 3.1E-44 375.4 26.3 216 616-857 5-225 (362)
71 PRK13536 nodulation factor exp 100.0 2.9E-39 6.2E-44 370.7 28.3 216 615-856 40-257 (340)
72 COG1124 DppF ABC-type dipeptid 100.0 1E-39 2.2E-44 337.8 21.0 217 616-856 3-227 (252)
73 COG1122 CbiO ABC-type cobalt t 100.0 1.1E-39 2.4E-44 350.6 22.1 215 616-855 3-223 (235)
74 COG0411 LivG ABC-type branched 100.0 6.1E-40 1.3E-44 339.9 18.5 218 617-857 5-236 (250)
75 PRK10851 sulfate/thiosulfate t 100.0 4.3E-39 9.3E-44 371.2 26.3 218 616-856 2-222 (353)
76 PRK11607 potG putrescine trans 100.0 6.9E-39 1.5E-43 371.7 28.0 217 615-857 18-236 (377)
77 PRK09452 potA putrescine/sperm 100.0 7.2E-39 1.6E-43 370.8 27.5 215 616-856 14-230 (375)
78 cd03259 ABC_Carb_Solutes_like 100.0 7.8E-39 1.7E-43 347.1 25.2 210 618-853 2-213 (213)
79 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.4E-38 3E-43 346.8 26.9 215 618-855 2-218 (220)
80 TIGR00960 3a0501s02 Type II (G 100.0 7.8E-39 1.7E-43 347.9 24.8 209 617-849 2-216 (216)
81 TIGR01288 nodI ATP-binding ABC 100.0 1.1E-38 2.4E-43 363.4 26.4 215 616-856 4-220 (303)
82 cd03265 ABC_DrrA DrrA is the A 100.0 1.3E-38 2.8E-43 347.1 25.5 213 617-855 1-216 (220)
83 PRK11000 maltose/maltodextrin 100.0 1.3E-38 2.9E-43 370.3 26.5 215 616-856 3-219 (369)
84 COG0410 LivF ABC-type branched 100.0 6.8E-39 1.5E-43 329.5 21.0 214 617-857 4-223 (237)
85 TIGR01188 drrA daunorubicin re 100.0 9.1E-39 2E-43 363.9 24.1 203 642-856 5-209 (302)
86 cd03269 ABC_putative_ATPase Th 100.0 1.9E-38 4E-43 343.4 25.1 209 618-853 2-210 (210)
87 PRK09536 btuD corrinoid ABC tr 100.0 1.2E-38 2.7E-43 370.5 25.3 219 616-857 3-225 (402)
88 cd03301 ABC_MalK_N The N-termi 100.0 2.5E-38 5.5E-43 343.3 25.8 210 618-853 2-213 (213)
89 cd03296 ABC_CysA_sulfate_impor 100.0 3.6E-38 7.7E-43 348.0 27.0 217 616-855 2-221 (239)
90 PRK11153 metN DL-methionine tr 100.0 3E-38 6.4E-43 364.5 27.4 218 617-856 2-226 (343)
91 cd03219 ABC_Mj1267_LivG_branch 100.0 2.8E-38 6.1E-43 348.6 25.7 215 618-855 2-227 (236)
92 TIGR01186 proV glycine betaine 100.0 1.6E-38 3.5E-43 365.2 24.3 204 642-857 5-216 (363)
93 KOG0058 Peptide exporter, ABC 100.0 2.3E-39 5E-44 379.9 17.4 217 615-857 464-688 (716)
94 cd03266 ABC_NatA_sodium_export 100.0 3.9E-38 8.4E-43 343.1 25.2 215 617-853 2-218 (218)
95 cd03218 ABC_YhbG The ABC trans 100.0 4.6E-38 1E-42 346.0 25.9 213 618-856 2-218 (232)
96 TIGR03522 GldA_ABC_ATP gliding 100.0 5E-38 1.1E-42 357.4 27.0 213 617-856 3-217 (301)
97 cd03268 ABC_BcrA_bacitracin_re 100.0 3.3E-38 7E-43 341.0 24.0 206 618-853 2-208 (208)
98 cd03234 ABCG_White The White s 100.0 6.8E-38 1.5E-42 342.7 26.6 219 617-853 4-226 (226)
99 COG4152 ABC-type uncharacteriz 100.0 9.3E-39 2E-43 326.5 18.3 213 617-856 3-215 (300)
100 cd03260 ABC_PstB_phosphate_tra 100.0 4.1E-38 8.8E-43 345.1 24.8 214 618-856 2-225 (227)
101 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.4E-38 7.4E-43 343.5 24.1 208 618-848 2-217 (218)
102 COG4559 ABC-type hemin transpo 100.0 2E-38 4.4E-43 317.7 20.2 215 617-857 2-227 (259)
103 cd03256 ABC_PhnC_transporter A 100.0 3E-38 6.6E-43 349.6 23.8 217 618-856 2-230 (241)
104 PRK11629 lolD lipoprotein tran 100.0 1.4E-37 3.1E-42 341.8 28.3 217 616-855 5-229 (233)
105 cd03226 ABC_cobalt_CbiO_domain 100.0 3.2E-38 6.9E-43 340.1 22.5 192 643-850 13-205 (205)
106 cd03263 ABC_subfamily_A The AB 100.0 5.2E-38 1.1E-42 342.6 24.3 214 617-855 1-216 (220)
107 cd03258 ABC_MetN_methionine_tr 100.0 7.7E-38 1.7E-42 344.3 25.3 217 617-855 2-225 (233)
108 PRK09493 glnQ glutamine ABC tr 100.0 1.4E-37 3E-42 343.7 26.7 215 617-856 2-221 (240)
109 PRK13637 cbiO cobalt transport 100.0 1.3E-37 2.9E-42 351.4 26.9 219 617-856 3-230 (287)
110 PRK11248 tauB taurine transpor 100.0 1.9E-37 4.2E-42 344.3 27.6 212 617-855 2-215 (255)
111 TIGR02315 ABC_phnC phosphonate 100.0 4.9E-38 1.1E-42 348.3 22.6 218 617-856 2-231 (243)
112 TIGR02673 FtsE cell division A 100.0 1E-37 2.2E-42 338.7 24.6 207 617-848 2-214 (214)
113 PRK13651 cobalt transporter AT 100.0 9.6E-38 2.1E-42 354.0 25.2 220 616-856 2-250 (305)
114 cd03292 ABC_FtsE_transporter F 100.0 1E-37 2.2E-42 339.0 24.3 206 618-848 2-213 (214)
115 cd03224 ABC_TM1139_LivF_branch 100.0 1.1E-37 2.3E-42 340.8 24.3 210 618-855 2-216 (222)
116 PRK11831 putative ABC transpor 100.0 1.7E-37 3.6E-42 348.1 26.3 216 616-856 7-229 (269)
117 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.5E-37 3.3E-42 343.6 25.5 213 618-855 2-220 (242)
118 PRK13647 cbiO cobalt transport 100.0 1.7E-37 3.6E-42 348.5 26.1 215 616-855 4-222 (274)
119 PRK11264 putative amino-acid A 100.0 2.1E-37 4.6E-42 344.6 26.5 214 617-855 4-228 (250)
120 PRK13643 cbiO cobalt transport 100.0 1.5E-37 3.2E-42 351.2 25.6 218 617-856 2-229 (288)
121 PRK11247 ssuB aliphatic sulfon 100.0 2.2E-37 4.9E-42 342.9 25.9 207 615-855 11-218 (257)
122 PRK13634 cbiO cobalt transport 100.0 2.2E-37 4.7E-42 350.3 26.2 219 617-856 3-231 (290)
123 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.2E-37 2.6E-42 349.0 23.5 203 642-856 36-246 (269)
124 COG4525 TauB ABC-type taurine 100.0 1.2E-37 2.7E-42 307.2 20.4 201 643-856 18-220 (259)
125 PRK13631 cbiO cobalt transport 100.0 2.7E-37 5.9E-42 352.2 26.6 220 615-856 20-261 (320)
126 cd03262 ABC_HisP_GlnQ_permease 100.0 1.8E-37 3.9E-42 336.7 23.8 207 618-849 2-213 (213)
127 PRK10908 cell division protein 100.0 3.4E-37 7.4E-42 336.4 26.1 209 617-850 2-216 (222)
128 PRK10895 lipopolysaccharide AB 100.0 1.7E-37 3.7E-42 343.2 24.0 216 616-856 3-222 (241)
129 cd03257 ABC_NikE_OppD_transpor 100.0 2.7E-37 5.8E-42 339.2 25.3 216 617-853 2-228 (228)
130 cd03264 ABC_drug_resistance_li 100.0 2E-37 4.4E-42 335.5 23.9 209 617-853 1-211 (211)
131 TIGR02211 LolD_lipo_ex lipopro 100.0 4.1E-37 8.8E-42 335.8 26.2 211 617-850 2-220 (221)
132 TIGR00972 3a0107s01c2 phosphat 100.0 3.5E-37 7.7E-42 341.8 25.6 214 617-855 2-227 (247)
133 PRK13650 cbiO cobalt transport 100.0 2.8E-37 6.2E-42 347.6 25.0 217 616-856 4-225 (279)
134 PRK10619 histidine/lysine/argi 100.0 4.6E-37 9.9E-42 342.9 26.3 215 616-855 5-236 (257)
135 PRK11614 livF leucine/isoleuci 100.0 2.4E-37 5.3E-42 341.1 23.6 213 616-856 5-222 (237)
136 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 7.4E-37 1.6E-41 336.9 27.3 212 617-855 2-216 (236)
137 COG4181 Predicted ABC-type tra 100.0 1E-37 2.2E-42 301.5 17.6 213 616-851 6-226 (228)
138 PRK13636 cbiO cobalt transport 100.0 5.3E-37 1.2E-41 346.1 26.3 216 616-856 5-227 (283)
139 PRK13646 cbiO cobalt transport 100.0 4.6E-37 1E-41 347.2 25.8 219 616-856 2-231 (286)
140 TIGR03740 galliderm_ABC gallid 100.0 5.3E-37 1.2E-41 335.1 25.4 209 618-857 2-210 (223)
141 PRK11124 artP arginine transpo 100.0 5.5E-37 1.2E-41 339.4 25.7 215 616-856 2-226 (242)
142 cd03235 ABC_Metallic_Cations A 100.0 2E-37 4.4E-42 336.1 21.8 199 643-853 12-213 (213)
143 PRK15079 oligopeptide ABC tran 100.0 7.7E-37 1.7E-41 349.8 27.6 231 615-856 7-247 (331)
144 PRK13641 cbiO cobalt transport 100.0 6.4E-37 1.4E-41 346.2 26.6 220 616-856 2-230 (287)
145 cd03225 ABC_cobalt_CbiO_domain 100.0 2.8E-37 6.1E-42 334.5 22.6 194 643-848 14-211 (211)
146 PRK10070 glycine betaine trans 100.0 4.9E-37 1.1E-41 356.9 25.5 229 616-856 4-250 (400)
147 KOG0055 Multidrug/pheromone ex 100.0 1.1E-36 2.4E-41 376.9 29.6 220 614-857 348-573 (1228)
148 PRK11300 livG leucine/isoleuci 100.0 6.4E-37 1.4E-41 341.8 25.0 218 616-856 5-239 (255)
149 PRK13548 hmuV hemin importer A 100.0 7.2E-37 1.6E-41 340.8 25.2 214 617-856 3-226 (258)
150 TIGR03005 ectoine_ehuA ectoine 100.0 9.7E-37 2.1E-41 339.4 26.2 214 617-855 1-231 (252)
151 PRK14268 phosphate ABC transpo 100.0 1.1E-36 2.4E-41 339.8 26.7 215 615-855 11-237 (258)
152 TIGR01978 sufC FeS assembly AT 100.0 9.1E-37 2E-41 338.3 25.8 217 617-855 1-229 (243)
153 PRK10575 iron-hydroxamate tran 100.0 6.7E-37 1.4E-41 342.7 24.7 219 615-856 10-233 (265)
154 PRK14273 phosphate ABC transpo 100.0 1.2E-36 2.7E-41 339.0 26.7 216 615-855 6-233 (254)
155 PRK13644 cbiO cobalt transport 100.0 1E-36 2.2E-41 342.2 26.1 214 617-856 2-220 (274)
156 PRK13652 cbiO cobalt transport 100.0 9.2E-37 2E-41 343.4 25.7 215 617-856 4-223 (277)
157 PRK14247 phosphate ABC transpo 100.0 1.5E-36 3.2E-41 337.7 26.8 217 616-855 3-229 (250)
158 TIGR03411 urea_trans_UrtD urea 100.0 1.3E-36 2.8E-41 336.5 26.2 216 617-856 3-227 (242)
159 cd03298 ABC_ThiQ_thiamine_tran 100.0 8.1E-37 1.8E-41 330.8 24.0 208 618-853 2-211 (211)
160 PRK11231 fecE iron-dicitrate t 100.0 7.3E-37 1.6E-41 340.8 24.2 218 617-857 3-224 (255)
161 PRK13635 cbiO cobalt transport 100.0 1.2E-36 2.5E-41 342.3 26.1 216 616-856 5-225 (279)
162 TIGR03410 urea_trans_UrtE urea 100.0 7.6E-37 1.6E-41 335.7 23.6 212 617-857 1-218 (230)
163 PRK09984 phosphonate/organopho 100.0 9.7E-37 2.1E-41 341.2 24.8 221 616-857 4-239 (262)
164 PRK14267 phosphate ABC transpo 100.0 1.7E-36 3.8E-41 337.7 26.5 218 616-856 4-233 (253)
165 PRK10584 putative ABC transpor 100.0 2.4E-36 5.2E-41 331.3 27.1 213 616-851 6-226 (228)
166 PRK13638 cbiO cobalt transport 100.0 1.4E-36 3.1E-41 341.2 25.6 214 617-856 2-221 (271)
167 PRK11022 dppD dipeptide transp 100.0 2.4E-36 5.2E-41 345.8 27.8 225 616-856 3-239 (326)
168 TIGR02769 nickel_nikE nickel i 100.0 1.6E-36 3.4E-41 339.7 25.7 224 617-856 3-236 (265)
169 PRK13639 cbiO cobalt transport 100.0 1.5E-36 3.2E-41 341.4 25.3 215 617-856 2-222 (275)
170 PRK10253 iron-enterobactin tra 100.0 1.1E-36 2.4E-41 340.9 24.3 220 615-857 6-230 (265)
171 TIGR03873 F420-0_ABC_ATP propo 100.0 1.2E-36 2.5E-41 339.4 24.3 217 617-856 2-222 (256)
172 PRK11308 dppF dipeptide transp 100.0 2.8E-36 6.1E-41 345.0 27.9 227 615-856 4-240 (327)
173 PRK14242 phosphate transporter 100.0 2.6E-36 5.7E-41 336.3 26.9 221 614-855 4-232 (253)
174 PRK09473 oppD oligopeptide tra 100.0 2.9E-36 6.4E-41 345.3 27.9 226 616-857 12-248 (330)
175 PRK14245 phosphate ABC transpo 100.0 2.3E-36 5E-41 335.9 26.1 220 616-856 3-230 (250)
176 COG0444 DppD ABC-type dipeptid 100.0 1.4E-36 3.1E-41 329.2 23.4 225 617-857 2-240 (316)
177 PRK13632 cbiO cobalt transport 100.0 2.6E-36 5.6E-41 338.9 26.5 217 615-856 6-227 (271)
178 cd03233 ABC_PDR_domain1 The pl 100.0 2.5E-36 5.4E-41 323.6 25.1 196 616-853 3-202 (202)
179 TIGR03415 ABC_choXWV_ATP choli 100.0 1.1E-36 2.5E-41 351.1 24.0 205 641-857 35-251 (382)
180 PRK14241 phosphate transporter 100.0 3.1E-36 6.7E-41 336.4 26.7 218 616-856 4-238 (258)
181 PRK13649 cbiO cobalt transport 100.0 2.8E-36 6.1E-41 340.7 26.5 219 616-856 2-230 (280)
182 TIGR01277 thiQ thiamine ABC tr 100.0 2.9E-36 6.4E-41 326.7 25.2 209 618-854 2-212 (213)
183 PRK13549 xylose transporter AT 100.0 2E-36 4.3E-41 370.1 26.6 222 616-858 5-230 (506)
184 COG4175 ProV ABC-type proline/ 100.0 3E-37 6.4E-42 326.6 16.5 203 643-857 41-251 (386)
185 PRK13648 cbiO cobalt transport 100.0 3.4E-36 7.3E-41 337.8 25.8 217 615-856 6-227 (269)
186 PRK10744 pstB phosphate transp 100.0 4.1E-36 8.9E-41 335.6 26.4 219 612-855 9-239 (260)
187 PRK14237 phosphate transporter 100.0 6.7E-36 1.5E-40 334.8 27.6 225 611-856 15-247 (267)
188 TIGR01184 ntrCD nitrate transp 100.0 2.2E-36 4.8E-41 331.1 23.2 198 646-855 1-199 (230)
189 cd03300 ABC_PotA_N PotA is an 100.0 5.3E-36 1.1E-40 329.0 26.1 212 618-855 2-215 (232)
190 cd03232 ABC_PDR_domain2 The pl 100.0 4.1E-36 8.9E-41 319.5 24.4 190 616-853 3-192 (192)
191 COG4988 CydD ABC-type transpor 100.0 1.9E-36 4.1E-41 349.6 23.6 214 614-857 318-540 (559)
192 PRK14235 phosphate transporter 100.0 6.4E-36 1.4E-40 334.9 27.3 217 615-855 18-246 (267)
193 PRK14250 phosphate ABC transpo 100.0 3.4E-36 7.3E-41 332.4 24.6 209 616-855 3-216 (241)
194 PRK11144 modC molybdate transp 100.0 2.6E-36 5.7E-41 349.5 24.8 192 648-857 16-215 (352)
195 PRK13547 hmuV hemin importer A 100.0 3.2E-36 6.9E-41 336.6 24.6 219 617-856 2-240 (272)
196 PRK15093 antimicrobial peptide 100.0 5.9E-36 1.3E-40 343.9 27.5 227 616-856 3-244 (330)
197 TIGR02142 modC_ABC molybdenum 100.0 2.7E-36 5.9E-41 350.1 24.9 195 648-856 15-217 (354)
198 PRK14256 phosphate ABC transpo 100.0 5E-36 1.1E-40 333.7 25.9 221 616-856 4-232 (252)
199 TIGR00968 3a0106s01 sulfate AB 100.0 5.9E-36 1.3E-40 329.5 26.0 213 618-856 2-216 (237)
200 PRK13633 cobalt transporter AT 100.0 3E-36 6.6E-41 339.7 24.2 220 616-856 4-229 (280)
201 PRK13640 cbiO cobalt transport 100.0 4.7E-36 1E-40 338.3 25.7 219 615-856 4-228 (282)
202 PRK13645 cbiO cobalt transport 100.0 5.3E-36 1.1E-40 339.6 26.1 220 616-856 6-236 (289)
203 PRK14269 phosphate ABC transpo 100.0 6.2E-36 1.3E-40 331.5 25.6 219 617-855 3-225 (246)
204 TIGR03608 L_ocin_972_ABC putat 100.0 4E-36 8.6E-41 324.4 23.3 189 643-843 11-206 (206)
205 cd03297 ABC_ModC_molybdenum_tr 100.0 5.7E-36 1.2E-40 324.8 24.5 191 648-853 16-214 (214)
206 COG2274 SunT ABC-type bacterio 100.0 1.1E-36 2.3E-41 374.0 21.0 215 613-856 468-692 (709)
207 PRK14259 phosphate ABC transpo 100.0 7.1E-36 1.5E-40 334.7 25.4 215 615-855 12-248 (269)
208 PRK10771 thiQ thiamine transpo 100.0 7.2E-36 1.6E-40 328.1 24.9 212 617-856 2-215 (232)
209 cd03213 ABCG_EPDR ABCG transpo 100.0 9.6E-36 2.1E-40 317.0 25.1 190 616-853 3-194 (194)
210 cd03299 ABC_ModC_like Archeal 100.0 1.1E-35 2.4E-40 326.9 26.1 212 618-856 2-215 (235)
211 cd03267 ABC_NatA_like Similar 100.0 7.3E-36 1.6E-40 328.4 24.5 200 642-853 33-236 (236)
212 PRK13642 cbiO cobalt transport 100.0 8.3E-36 1.8E-40 335.6 25.3 217 616-856 4-225 (277)
213 PRK14274 phosphate ABC transpo 100.0 9.1E-36 2E-40 332.8 25.5 216 616-856 12-239 (259)
214 PRK15112 antimicrobial peptide 100.0 1E-35 2.2E-40 333.4 25.6 224 616-855 4-234 (267)
215 PRK10762 D-ribose transporter 100.0 7.2E-36 1.6E-40 364.8 26.6 220 616-858 4-228 (501)
216 PRK14270 phosphate ABC transpo 100.0 1.7E-35 3.6E-40 329.3 26.6 217 615-856 3-231 (251)
217 PRK13543 cytochrome c biogenes 100.0 1.4E-35 3E-40 321.3 25.0 202 615-844 10-211 (214)
218 PRK14240 phosphate transporter 100.0 2E-35 4.3E-40 328.6 26.9 215 616-855 3-229 (250)
219 PRK14239 phosphate transporter 100.0 2E-35 4.3E-40 329.2 26.5 216 616-856 5-232 (252)
220 PRK14253 phosphate ABC transpo 100.0 1.8E-35 3.9E-40 328.8 25.9 219 616-855 3-228 (249)
221 KOG0057 Mitochondrial Fe/S clu 100.0 3.4E-36 7.3E-41 340.9 20.1 212 615-857 350-571 (591)
222 PRK09700 D-allose transporter 100.0 9.5E-36 2.1E-40 364.8 25.6 219 616-857 5-231 (510)
223 TIGR02982 heterocyst_DevA ABC 100.0 1.9E-35 4E-40 322.1 25.1 211 617-849 2-219 (220)
224 PRK11701 phnK phosphonate C-P 100.0 1.8E-35 3.9E-40 330.2 25.5 216 616-856 6-237 (258)
225 PRK14260 phosphate ABC transpo 100.0 2E-35 4.4E-40 329.8 25.9 217 616-856 7-239 (259)
226 PRK10247 putative ABC transpor 100.0 1.2E-35 2.6E-40 324.4 23.6 210 616-854 7-221 (225)
227 PRK14262 phosphate ABC transpo 100.0 2.6E-35 5.6E-40 327.7 26.5 220 616-856 3-230 (250)
228 PRK14236 phosphate transporter 100.0 2.4E-35 5.3E-40 331.2 26.6 217 615-856 24-252 (272)
229 PRK10418 nikD nickel transport 100.0 2.5E-35 5.5E-40 328.1 26.4 213 616-855 4-225 (254)
230 PRK15056 manganese/iron transp 100.0 1.6E-35 3.4E-40 332.7 24.8 220 615-857 5-227 (272)
231 PRK14244 phosphate ABC transpo 100.0 2.7E-35 5.8E-40 327.6 26.4 221 615-855 4-232 (251)
232 COG4604 CeuD ABC-type enteroch 100.0 5.9E-37 1.3E-41 303.3 11.4 204 642-857 13-222 (252)
233 PRK14272 phosphate ABC transpo 100.0 3.5E-35 7.5E-40 327.2 27.1 217 616-856 4-232 (252)
234 PRK14258 phosphate ABC transpo 100.0 2.6E-35 5.6E-40 329.2 25.8 222 616-856 7-241 (261)
235 TIGR02770 nickel_nikD nickel i 100.0 1.4E-35 3.1E-40 325.1 23.3 201 645-855 1-210 (230)
236 PRK14271 phosphate ABC transpo 100.0 3.9E-35 8.5E-40 329.4 27.1 221 615-856 20-247 (276)
237 PRK13538 cytochrome c biogenes 100.0 1.9E-35 4.2E-40 317.9 23.4 194 617-839 2-197 (204)
238 PRK14248 phosphate ABC transpo 100.0 3.6E-35 7.8E-40 329.5 26.5 215 616-855 21-247 (268)
239 COG1129 MglA ABC-type sugar tr 100.0 2E-35 4.3E-40 341.3 24.6 230 615-867 7-243 (500)
240 COG4598 HisP ABC-type histidin 100.0 1.8E-36 3.9E-41 294.5 13.3 205 641-856 17-237 (256)
241 PRK15439 autoinducer 2 ABC tra 100.0 1.9E-35 4.2E-40 361.1 25.9 212 616-857 11-226 (510)
242 cd03231 ABC_CcmA_heme_exporter 100.0 1.9E-35 4.2E-40 316.9 22.7 195 618-843 2-198 (201)
243 PRK14249 phosphate ABC transpo 100.0 4.7E-35 1E-39 325.6 26.7 220 616-856 4-231 (251)
244 PRK14254 phosphate ABC transpo 100.0 6.4E-35 1.4E-39 329.0 28.1 215 615-855 38-264 (285)
245 PRK14261 phosphate ABC transpo 100.0 4.7E-35 1E-39 326.1 26.5 215 616-855 6-232 (253)
246 TIGR02633 xylG D-xylose ABC tr 100.0 3.1E-35 6.6E-40 359.8 27.1 220 617-857 2-227 (500)
247 COG4987 CydC ABC-type transpor 100.0 3.5E-36 7.5E-41 340.7 17.0 213 616-857 336-558 (573)
248 PRK14257 phosphate ABC transpo 100.0 5.3E-35 1.1E-39 334.4 27.0 222 615-856 79-309 (329)
249 PRK14275 phosphate ABC transpo 100.0 5.8E-35 1.3E-39 329.8 26.8 216 615-855 38-265 (286)
250 PRK10419 nikE nickel transport 100.0 4.9E-35 1.1E-39 327.8 25.9 225 617-857 4-238 (268)
251 PRK14265 phosphate ABC transpo 100.0 4.2E-35 9E-40 329.1 25.4 217 614-856 18-254 (274)
252 PRK14263 phosphate ABC transpo 100.0 6.8E-35 1.5E-39 325.0 26.8 221 614-856 6-241 (261)
253 PRK14251 phosphate ABC transpo 100.0 5.8E-35 1.3E-39 325.1 26.2 215 616-855 4-230 (251)
254 cd03252 ABCC_Hemolysin The ABC 100.0 1E-35 2.3E-40 328.2 19.9 209 618-855 2-220 (237)
255 CHL00131 ycf16 sulfate ABC tra 100.0 1.1E-34 2.4E-39 323.2 27.6 219 616-856 7-237 (252)
256 PRK11174 cysteine/glutathione 100.0 1.1E-35 2.3E-40 371.6 21.8 211 615-856 348-568 (588)
257 PRK14255 phosphate ABC transpo 100.0 8.4E-35 1.8E-39 324.0 26.5 215 616-855 5-231 (252)
258 PRK14238 phosphate transporter 100.0 7.5E-35 1.6E-39 326.8 26.3 215 616-855 24-250 (271)
259 TIGR01166 cbiO cobalt transpor 100.0 3.4E-35 7.3E-40 312.6 21.5 179 642-830 4-188 (190)
260 PRK11288 araG L-arabinose tran 100.0 5.7E-35 1.2E-39 356.9 26.5 217 616-855 4-224 (501)
261 cd03230 ABC_DR_subfamily_A Thi 100.0 4.3E-35 9.3E-40 306.4 21.7 169 618-848 2-172 (173)
262 PRK13539 cytochrome c biogenes 100.0 5.6E-35 1.2E-39 314.9 23.1 196 617-843 3-198 (207)
263 PRK10982 galactose/methyl gala 100.0 3.7E-35 8.1E-40 357.9 24.5 207 643-858 11-221 (491)
264 cd03245 ABCC_bacteriocin_expor 100.0 4.1E-35 8.9E-40 319.8 22.1 209 617-853 3-220 (220)
265 PRK13546 teichoic acids export 100.0 1.3E-34 2.9E-39 321.8 26.5 220 615-856 3-228 (264)
266 TIGR02323 CP_lyasePhnK phospho 100.0 8.9E-35 1.9E-39 324.0 25.1 215 616-855 3-233 (253)
267 PRK14243 phosphate transporter 100.0 6.9E-35 1.5E-39 326.0 23.8 218 616-855 10-243 (264)
268 COG4161 ArtP ABC-type arginine 100.0 2.6E-35 5.7E-40 281.2 17.1 216 616-856 2-226 (242)
269 TIGR01189 ccmA heme ABC export 100.0 8.2E-35 1.8E-39 311.6 22.9 185 618-830 2-188 (198)
270 COG1123 ATPase components of v 100.0 7.5E-35 1.6E-39 338.4 24.3 225 616-857 5-241 (539)
271 PRK14246 phosphate ABC transpo 100.0 1.2E-34 2.5E-39 322.4 24.7 215 616-856 10-237 (257)
272 PRK03695 vitamin B12-transport 100.0 8.5E-35 1.8E-39 322.2 23.4 198 645-856 11-218 (248)
273 PRK13540 cytochrome c biogenes 100.0 7.6E-35 1.7E-39 312.2 22.2 194 617-841 2-197 (200)
274 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 7.5E-35 1.6E-39 317.5 22.3 191 642-853 34-224 (224)
275 COG4148 ModC ABC-type molybdat 100.0 6.4E-36 1.4E-40 311.1 12.9 191 648-856 16-214 (352)
276 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.3E-35 7.1E-40 372.8 22.3 209 616-856 451-669 (686)
277 cd03251 ABCC_MsbA MsbA is an e 100.0 3.4E-35 7.3E-40 323.6 19.1 209 618-855 2-220 (234)
278 COG3845 ABC-type uncharacteriz 100.0 1.7E-34 3.6E-39 325.3 25.0 252 616-890 4-262 (501)
279 PRK11176 lipid transporter ATP 100.0 5.6E-35 1.2E-39 364.9 23.5 214 615-856 340-563 (582)
280 PRK09580 sufC cysteine desulfu 100.0 1.7E-34 3.7E-39 321.0 24.7 218 617-856 2-231 (248)
281 PRK14252 phosphate ABC transpo 100.0 3.2E-34 7E-39 321.3 27.1 217 614-855 14-244 (265)
282 PRK14266 phosphate ABC transpo 100.0 2.5E-34 5.4E-39 319.8 25.9 220 616-856 3-230 (250)
283 cd03254 ABCC_Glucan_exporter_l 100.0 5.1E-35 1.1E-39 321.1 19.8 210 616-855 2-221 (229)
284 PRK14264 phosphate ABC transpo 100.0 3E-34 6.5E-39 326.7 26.8 224 615-856 44-285 (305)
285 cd03229 ABC_Class3 This class 100.0 8.6E-35 1.9E-39 305.6 20.5 171 618-848 2-178 (178)
286 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 5.1E-35 1.1E-39 323.0 19.6 210 618-855 2-221 (238)
287 PRK10790 putative multidrug tr 100.0 9.3E-35 2E-39 363.1 23.9 211 615-856 339-559 (592)
288 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 5.9E-35 1.3E-39 372.2 21.4 211 615-856 476-696 (710)
289 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.4E-34 3.1E-39 322.4 21.7 212 616-857 2-222 (275)
290 PRK11160 cysteine/glutathione 100.0 8.1E-35 1.8E-39 360.7 21.9 213 615-856 337-558 (574)
291 TIGR02324 CP_lyasePhnL phospho 100.0 3E-34 6.5E-39 313.8 23.7 209 617-843 2-222 (224)
292 COG1132 MdlB ABC-type multidru 100.0 4.7E-35 1E-39 363.7 19.5 215 615-857 327-549 (567)
293 PRK09544 znuC high-affinity zi 100.0 2.9E-34 6.3E-39 317.5 23.6 199 616-856 4-205 (251)
294 cd03215 ABC_Carb_Monos_II This 100.0 2.2E-34 4.7E-39 303.7 20.9 160 645-848 15-181 (182)
295 TIGR03269 met_CoM_red_A2 methy 100.0 2.9E-34 6.2E-39 352.6 25.1 214 617-856 1-254 (520)
296 PRK10261 glutathione transport 100.0 2.6E-34 5.7E-39 357.9 25.0 220 616-856 12-254 (623)
297 cd03244 ABCC_MRP_domain2 Domai 100.0 2.4E-34 5.1E-39 314.1 21.4 208 617-854 3-220 (221)
298 PRK13545 tagH teichoic acids e 100.0 5.1E-34 1.1E-38 333.0 25.5 208 616-856 21-228 (549)
299 cd03247 ABCC_cytochrome_bd The 100.0 2.6E-34 5.7E-39 302.1 20.8 176 617-853 1-178 (178)
300 KOG0058 Peptide exporter, ABC 100.0 5.5E-36 1.2E-40 351.6 8.9 187 4-230 499-691 (716)
301 cd03246 ABCC_Protease_Secretio 100.0 2.3E-34 4.9E-39 300.9 20.2 168 618-848 2-172 (173)
302 cd03253 ABCC_ATM1_transporter 100.0 1.6E-34 3.5E-39 318.7 19.9 208 618-855 2-219 (236)
303 TIGR00958 3a01208 Conjugate Tr 100.0 1.1E-34 2.3E-39 367.6 21.1 212 615-856 477-698 (711)
304 TIGR03375 type_I_sec_LssB type 100.0 2.3E-34 5E-39 365.6 24.0 213 615-856 462-684 (694)
305 COG0396 sufC Cysteine desulfur 100.0 1.2E-33 2.5E-38 289.0 23.4 229 616-869 3-238 (251)
306 cd03248 ABCC_TAP TAP, the Tran 100.0 1.5E-34 3.2E-39 316.6 18.3 208 615-848 10-225 (226)
307 PRK15134 microcin C ABC transp 100.0 7.2E-34 1.6E-38 349.5 26.4 222 616-856 5-242 (529)
308 TIGR01193 bacteriocin_ABC ABC- 100.0 2.4E-34 5.1E-39 366.3 22.4 211 616-856 473-693 (708)
309 COG4619 ABC-type uncharacteriz 100.0 6.1E-35 1.3E-39 281.3 12.7 193 642-849 15-212 (223)
310 TIGR03771 anch_rpt_ABC anchore 100.0 4.6E-34 1E-38 311.3 21.3 195 651-857 1-198 (223)
311 PRK00349 uvrA excinuclease ABC 100.0 5.9E-33 1.3E-37 349.6 34.2 124 717-856 791-923 (943)
312 KOG0056 Heavy metal exporter H 100.0 7E-35 1.5E-39 321.2 14.3 220 610-855 531-756 (790)
313 cd03217 ABC_FeS_Assembly ABC-t 100.0 9.5E-34 2.1E-38 303.4 22.3 181 618-855 2-189 (200)
314 PRK13657 cyclic beta-1,2-gluca 100.0 4.6E-34 1E-38 356.3 22.9 211 616-856 334-554 (588)
315 cd03214 ABC_Iron-Siderophores_ 100.0 4.4E-34 9.5E-39 300.8 18.8 175 619-853 2-180 (180)
316 TIGR01842 type_I_sec_PrtD type 100.0 5E-34 1.1E-38 352.4 22.1 213 616-856 316-538 (544)
317 COG1119 ModF ABC-type molybden 100.0 4.9E-34 1.1E-38 295.7 17.9 218 614-854 29-256 (257)
318 cd03369 ABCC_NFT1 Domain 2 of 100.0 2E-33 4.4E-38 303.2 23.2 198 616-854 6-206 (207)
319 PRK00635 excinuclease ABC subu 100.0 7.8E-33 1.7E-37 360.6 32.2 136 714-857 759-903 (1809)
320 cd03288 ABCC_SUR2 The SUR doma 100.0 8.2E-34 1.8E-38 316.3 19.9 212 615-856 18-239 (257)
321 COG4618 ArpD ABC-type protease 100.0 6.7E-34 1.5E-38 318.8 18.8 223 608-856 326-556 (580)
322 PRK10938 putative molybdenum t 100.0 1E-33 2.2E-38 345.5 22.1 207 616-856 3-220 (490)
323 PRK13541 cytochrome c biogenes 100.0 2.4E-33 5.3E-38 299.3 22.2 191 617-840 2-192 (195)
324 cd03223 ABCD_peroxisomal_ALDP 100.0 2.3E-33 4.9E-38 290.8 21.2 164 618-848 2-165 (166)
325 cd03216 ABC_Carb_Monos_I This 100.0 3.2E-33 6.9E-38 288.8 21.4 158 617-851 1-162 (163)
326 TIGR01846 type_I_sec_HlyB type 100.0 9.9E-34 2.1E-38 359.4 21.6 213 615-856 454-676 (694)
327 PRK10789 putative multidrug tr 100.0 1.8E-33 3.9E-38 348.7 23.3 212 616-856 313-534 (569)
328 COG4674 Uncharacterized ABC-ty 100.0 6.1E-34 1.3E-38 281.5 14.9 219 615-857 4-232 (249)
329 TIGR02203 MsbA_lipidA lipid A 100.0 1.2E-33 2.7E-38 352.5 21.7 213 616-856 330-552 (571)
330 TIGR00630 uvra excinuclease AB 100.0 6.1E-32 1.3E-36 339.9 36.2 124 717-856 789-921 (924)
331 TIGR02868 CydC thiol reductant 100.0 1.1E-33 2.5E-38 348.9 19.4 188 615-829 333-529 (529)
332 TIGR01192 chvA glucan exporter 100.0 4.6E-33 9.9E-38 345.5 24.5 211 616-856 334-554 (585)
333 cd03250 ABCC_MRP_domain1 Domai 100.0 4.1E-33 8.8E-38 300.1 20.2 196 617-848 1-204 (204)
334 TIGR01187 potA spermidine/putr 100.0 3.5E-33 7.5E-38 320.3 20.7 185 661-857 1-187 (325)
335 cd03228 ABCC_MRP_Like The MRP 100.0 3.9E-33 8.4E-38 291.1 19.1 166 618-847 2-170 (171)
336 cd03290 ABCC_SUR1_N The SUR do 100.0 6.7E-33 1.5E-37 301.7 21.7 188 643-847 14-217 (218)
337 TIGR02204 MsbA_rel ABC transpo 100.0 2.7E-33 5.8E-38 349.7 21.1 214 615-856 336-559 (576)
338 cd03237 ABC_RNaseL_inhibitor_d 100.0 8.2E-33 1.8E-37 304.5 22.1 201 644-869 8-216 (246)
339 COG4586 ABC-type uncharacteriz 100.0 1.7E-33 3.8E-38 292.8 14.7 202 643-856 37-242 (325)
340 TIGR02857 CydD thiol reductant 100.0 4.2E-33 9.2E-38 343.8 20.8 200 616-843 320-529 (529)
341 PRK10535 macrolide transporter 100.0 6.2E-32 1.3E-36 337.7 28.5 219 616-857 4-229 (648)
342 cd03291 ABCC_CFTR1 The CFTR su 100.0 6.9E-32 1.5E-36 302.0 25.7 199 614-856 37-243 (282)
343 PRK15177 Vi polysaccharide exp 100.0 2.5E-32 5.5E-37 294.8 20.1 186 645-856 2-188 (213)
344 PRK10522 multidrug transporter 100.0 5.1E-32 1.1E-36 334.4 24.3 206 616-853 322-531 (547)
345 COG1131 CcmA ABC-type multidru 100.0 6.2E-33 1.3E-37 312.2 14.4 190 4-234 36-230 (293)
346 PRK15064 ABC transporter ATP-b 100.0 7.6E-32 1.6E-36 331.7 23.8 205 617-855 2-237 (530)
347 TIGR01194 cyc_pep_trnsptr cycl 100.0 8.8E-32 1.9E-36 332.3 23.7 211 615-852 336-551 (555)
348 COG1135 AbcC ABC-type metal io 100.0 1.4E-32 2.9E-37 292.7 13.0 185 4-230 37-231 (339)
349 PRK11819 putative ABC transpor 100.0 1.8E-31 4E-36 329.2 25.1 207 615-855 5-245 (556)
350 KOG0927 Predicted transporter 100.0 1.1E-31 2.3E-36 302.9 20.1 202 615-855 388-591 (614)
351 COG4136 ABC-type uncharacteriz 100.0 7.4E-32 1.6E-36 254.9 14.5 180 642-830 14-196 (213)
352 COG4608 AppF ABC-type oligopep 100.0 2.4E-31 5.3E-36 282.7 19.1 190 616-856 4-195 (268)
353 PTZ00265 multidrug resistance 100.0 2E-31 4.3E-36 355.4 22.9 213 616-845 382-654 (1466)
354 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.5E-31 9.7E-36 325.8 23.8 206 616-855 4-243 (552)
355 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.8E-31 3.9E-36 294.8 18.2 192 644-855 15-222 (255)
356 COG2274 SunT ABC-type bacterio 100.0 1.4E-32 3E-37 337.8 10.0 187 4-230 504-696 (709)
357 cd03222 ABC_RNaseL_inhibitor T 100.0 5.3E-31 1.2E-35 273.0 19.0 155 643-867 13-170 (177)
358 COG1101 PhnK ABC-type uncharac 100.0 3.6E-31 7.9E-36 266.3 16.8 205 641-854 17-232 (263)
359 COG1126 GlnQ ABC-type polar am 100.0 8.2E-32 1.8E-36 272.9 12.0 185 4-229 33-224 (240)
360 COG4172 ABC-type uncharacteriz 100.0 1.1E-30 2.3E-35 284.3 20.9 225 616-856 6-243 (534)
361 COG5265 ATM1 ABC-type transpor 100.0 1E-31 2.3E-36 294.6 12.6 215 613-855 259-481 (497)
362 cd03238 ABC_UvrA The excision 100.0 1.3E-30 2.8E-35 270.0 19.8 154 642-845 7-163 (176)
363 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.6E-30 3.5E-35 262.4 19.4 143 618-848 2-144 (144)
364 TIGR00954 3a01203 Peroxysomal 100.0 1.4E-30 3.1E-35 325.7 21.7 201 616-847 451-655 (659)
365 KOG0057 Mitochondrial Fe/S clu 100.0 9E-32 2E-36 305.1 9.9 187 4-230 383-574 (591)
366 KOG0059 Lipid exporter ABCA1 a 100.0 1.6E-29 3.5E-34 324.1 30.8 216 616-856 564-783 (885)
367 COG1134 TagH ABC-type polysacc 100.0 8.3E-30 1.8E-34 265.1 22.7 229 616-869 3-241 (249)
368 COG4133 CcmA ABC-type transpor 100.0 8.6E-31 1.9E-35 259.5 14.4 177 641-830 13-191 (209)
369 PRK10636 putative ABC transpor 100.0 1.7E-29 3.8E-34 314.8 23.7 204 617-855 2-231 (638)
370 PLN03232 ABC transporter C fam 100.0 1.9E-29 4E-34 340.2 23.5 204 616-857 614-825 (1495)
371 COG4167 SapF ABC-type antimicr 100.0 2.2E-29 4.9E-34 245.7 16.9 224 617-856 5-235 (267)
372 PLN03130 ABC transporter C fam 100.0 2.3E-29 5E-34 338.9 22.9 203 616-857 614-825 (1622)
373 PRK11174 cysteine/glutathione 100.0 2.3E-30 5E-35 323.6 11.8 187 4-230 381-572 (588)
374 cd00267 ABC_ATPase ABC (ATP-bi 100.0 5.6E-29 1.2E-33 256.2 19.4 141 643-845 12-155 (157)
375 KOG0056 Heavy metal exporter H 100.0 9.8E-31 2.1E-35 288.6 6.5 187 4-230 569-761 (790)
376 PRK11147 ABC transporter ATPas 100.0 1.1E-28 2.4E-33 308.6 24.8 204 616-855 3-238 (635)
377 COG1132 MdlB ABC-type multidru 100.0 2.7E-30 5.9E-35 321.0 10.1 187 4-230 360-552 (567)
378 COG4107 PhnK ABC-type phosphon 100.0 2E-29 4.3E-34 244.1 13.7 209 617-856 7-237 (258)
379 PRK13409 putative ATPase RIL; 100.0 2.2E-29 4.8E-34 308.9 17.5 181 642-844 86-285 (590)
380 COG3840 ThiQ ABC-type thiamine 100.0 1.4E-29 2.9E-34 248.1 10.7 186 4-230 30-219 (231)
381 COG1245 Predicted ATPase, RNas 100.0 4.2E-28 9E-33 267.8 23.7 173 646-844 357-530 (591)
382 COG1125 OpuBA ABC-type proline 100.0 2.9E-29 6.3E-34 258.9 13.3 187 3-230 31-225 (309)
383 COG4988 CydD ABC-type transpor 100.0 1.3E-29 2.9E-34 293.1 10.8 186 4-230 352-543 (559)
384 COG1136 SalX ABC-type antimicr 100.0 3.8E-29 8.2E-34 263.1 13.0 174 3-218 35-219 (226)
385 COG3839 MalK ABC-type sugar tr 100.0 3.1E-29 6.7E-34 279.4 13.0 187 3-230 33-223 (338)
386 TIGR00957 MRP_assoc_pro multi 100.0 2.7E-28 5.8E-33 329.4 24.5 203 616-857 636-847 (1522)
387 COG5265 ATM1 ABC-type transpor 100.0 7.6E-30 1.7E-34 280.1 7.5 184 5-230 295-486 (497)
388 PRK11650 ugpC glycerol-3-phosp 100.0 5.6E-29 1.2E-33 287.6 15.1 186 4-230 35-224 (356)
389 COG1120 FepC ABC-type cobalami 100.0 4E-29 8.6E-34 268.2 11.2 190 3-229 32-227 (258)
390 TIGR03265 PhnT2 putative 2-ami 100.0 8.3E-29 1.8E-33 285.8 14.6 186 4-230 35-224 (353)
391 TIGR02314 ABC_MetN D-methionin 100.0 1E-28 2.2E-33 282.8 14.6 185 4-229 36-229 (343)
392 COG1127 Ttg2A ABC-type transpo 100.0 1E-28 2.3E-33 254.4 13.0 187 4-230 39-235 (263)
393 PRK13537 nodulation ABC transp 100.0 1.2E-28 2.6E-33 280.4 14.4 185 4-230 38-227 (306)
394 COG1116 TauB ABC-type nitrate/ 100.0 8.2E-29 1.8E-33 259.9 11.4 172 3-217 33-207 (248)
395 TIGR01186 proV glycine betaine 100.0 1.7E-28 3.7E-33 282.3 15.1 186 4-230 24-219 (363)
396 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4.8E-29 1E-33 316.6 11.4 184 4-230 484-673 (686)
397 PRK11432 fbpC ferric transport 100.0 2.1E-28 4.6E-33 281.9 15.1 186 4-230 37-226 (351)
398 COG1118 CysA ABC-type sulfate/ 100.0 1.3E-28 2.9E-33 261.5 12.2 189 3-230 32-227 (345)
399 COG3638 ABC-type phosphate/pho 100.0 8E-29 1.7E-33 254.6 9.9 196 3-231 34-238 (258)
400 COG4555 NatA ABC-type Na+ tran 100.0 1.4E-28 3E-33 245.4 11.0 185 4-230 33-222 (245)
401 TIGR01271 CFTR_protein cystic 100.0 8.5E-28 1.9E-32 323.5 21.7 191 643-857 439-633 (1490)
402 COG0488 Uup ATPase components 100.0 1.4E-27 3E-32 284.7 20.4 206 616-855 3-235 (530)
403 cd03270 ABC_UvrA_I The excisio 100.0 2.8E-27 6E-32 257.8 21.1 191 642-853 7-226 (226)
404 cd03261 ABC_Org_Solvent_Resist 100.0 3.8E-28 8.3E-33 267.5 14.4 186 4-229 31-225 (235)
405 TIGR03258 PhnT 2-aminoethylpho 100.0 3.5E-28 7.5E-33 280.9 14.5 186 4-230 36-228 (362)
406 TIGR01188 drrA daunorubicin re 100.0 2.9E-28 6.3E-33 277.7 13.7 185 4-230 24-213 (302)
407 COG1122 CbiO ABC-type cobalt t 100.0 4.8E-28 1E-32 260.6 14.2 186 4-230 35-228 (235)
408 PRK09452 potA putrescine/sperm 99.9 6.3E-28 1.4E-32 279.7 14.8 186 4-230 45-234 (375)
409 TIGR01193 bacteriocin_ABC ABC- 99.9 1.5E-28 3.3E-33 313.0 10.3 187 4-230 505-697 (708)
410 PRK11607 potG putrescine trans 99.9 7.9E-28 1.7E-32 279.5 14.8 186 4-230 50-239 (377)
411 PRK11176 lipid transporter ATP 99.9 2.4E-28 5.3E-33 305.2 10.9 188 4-230 374-567 (582)
412 PRK10790 putative multidrug tr 99.9 2.9E-28 6.2E-33 304.8 11.5 186 4-230 372-563 (592)
413 COG1117 PstB ABC-type phosphat 99.9 5.1E-28 1.1E-32 243.8 10.9 186 4-229 38-236 (253)
414 PRK11153 metN DL-methionine tr 99.9 9.8E-28 2.1E-32 277.1 14.8 185 4-229 36-229 (343)
415 PRK11000 maltose/maltodextrin 99.9 9.4E-28 2E-32 279.4 14.6 186 4-230 34-223 (369)
416 PRK10851 sulfate/thiosulfate t 99.9 1.2E-27 2.6E-32 276.2 15.0 190 4-230 33-226 (353)
417 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 2.6E-28 5.6E-33 311.3 10.3 185 4-230 510-700 (710)
418 PLN03073 ABC transporter F fam 99.9 1.6E-27 3.4E-32 297.5 16.5 216 615-855 176-426 (718)
419 TIGR03375 type_I_sec_LssB type 99.9 3.5E-28 7.6E-33 309.1 10.8 187 4-230 496-688 (694)
420 PRK11160 cysteine/glutathione 99.9 3.4E-28 7.4E-33 301.6 10.3 186 4-230 371-562 (574)
421 COG3842 PotA ABC-type spermidi 99.9 6E-28 1.3E-32 270.6 11.1 188 3-230 35-226 (352)
422 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 2E-27 4.3E-32 253.6 14.4 187 4-230 35-227 (254)
423 PTZ00243 ABC transporter; Prov 99.9 6.6E-27 1.4E-31 315.0 22.9 189 642-857 672-867 (1560)
424 COG4987 CydC ABC-type transpor 99.9 4E-28 8.6E-33 275.5 8.9 187 4-230 369-561 (573)
425 cd03296 ABC_CysA_sulfate_impor 99.9 2.9E-27 6.2E-32 261.2 15.4 189 4-229 33-225 (239)
426 PF00005 ABC_tran: ABC transpo 99.9 2.2E-27 4.7E-32 238.7 13.2 134 646-798 1-137 (137)
427 TIGR00958 3a01208 Conjugate Tr 99.9 3.9E-28 8.4E-33 307.8 9.7 185 4-230 512-702 (711)
428 TIGR01187 potA spermidine/putr 99.9 2.5E-27 5.5E-32 271.9 15.3 186 4-230 1-190 (325)
429 cd03271 ABC_UvrA_II The excisi 99.9 1.4E-26 3E-31 254.1 19.6 197 643-855 8-261 (261)
430 cd03234 ABCG_White The White s 99.9 3.5E-27 7.7E-32 258.1 15.0 182 4-223 38-226 (226)
431 PRK13536 nodulation factor exp 99.9 3.1E-27 6.7E-32 271.4 15.2 185 4-230 72-261 (340)
432 cd03294 ABC_Pro_Gly_Bertaine T 99.9 3.7E-27 8.1E-32 264.2 15.1 186 4-230 55-250 (269)
433 COG4778 PhnL ABC-type phosphon 99.9 3.5E-27 7.6E-32 228.0 12.6 211 616-844 4-226 (235)
434 PRK10070 glycine betaine trans 99.9 3.8E-27 8.1E-32 274.3 14.7 186 4-230 59-254 (400)
435 cd03219 ABC_Mj1267_LivG_branch 99.9 3.9E-27 8.6E-32 259.8 14.2 194 4-229 31-231 (236)
436 COG2884 FtsE Predicted ATPase 99.9 3.7E-27 8E-32 233.4 12.3 180 2-224 31-220 (223)
437 cd03259 ABC_Carb_Solutes_like 99.9 3.5E-27 7.7E-32 255.9 13.4 179 4-223 31-213 (213)
438 TIGR01288 nodI ATP-binding ABC 99.9 3.7E-27 8.1E-32 268.8 14.3 185 4-230 35-224 (303)
439 cd03258 ABC_MetN_methionine_tr 99.9 4.3E-27 9.3E-32 258.9 14.1 185 4-229 36-229 (233)
440 COG1137 YhbG ABC-type (unclass 99.9 5.3E-27 1.1E-31 233.8 13.2 187 4-230 35-228 (243)
441 cd03293 ABC_NrtD_SsuB_transpor 99.9 4.9E-27 1.1E-31 256.0 14.0 180 4-226 35-219 (220)
442 cd03265 ABC_DrrA DrrA is the A 99.9 5E-27 1.1E-31 255.9 13.9 184 4-228 31-219 (220)
443 cd03218 ABC_YhbG The ABC trans 99.9 5.3E-27 1.2E-31 258.1 14.2 184 4-229 31-221 (232)
444 PRK13637 cbiO cobalt transport 99.9 8.2E-27 1.8E-31 263.6 15.8 186 4-230 38-234 (287)
445 cd03260 ABC_PstB_phosphate_tra 99.9 3.9E-27 8.4E-32 258.2 12.7 183 4-227 31-226 (227)
446 KOG0054 Multidrug resistance-a 99.9 1.6E-26 3.6E-31 294.2 19.9 205 615-857 517-728 (1381)
447 cd03295 ABC_OpuCA_Osmoprotecti 99.9 6.6E-27 1.4E-31 258.8 14.4 185 4-229 32-224 (242)
448 KOG0062 ATPase component of AB 99.9 6.6E-26 1.4E-30 254.9 22.4 198 614-850 360-558 (582)
449 COG0410 LivF ABC-type branched 99.9 6.1E-27 1.3E-31 241.4 12.9 186 3-230 33-226 (237)
450 cd03301 ABC_MalK_N The N-termi 99.9 7.2E-27 1.6E-31 253.5 14.1 179 4-223 31-213 (213)
451 PRK11144 modC molybdate transp 99.9 6.6E-27 1.4E-31 271.2 14.6 180 4-230 29-218 (352)
452 COG1124 DppF ABC-type dipeptid 99.9 4.7E-27 1E-31 243.9 11.7 185 4-230 38-231 (252)
453 cd03256 ABC_PhnC_transporter A 99.9 7.3E-27 1.6E-31 258.6 14.2 193 4-229 32-233 (241)
454 TIGR02142 modC_ABC molybdenum 99.9 7.2E-27 1.6E-31 271.4 14.5 184 4-230 28-221 (354)
455 PRK13634 cbiO cobalt transport 99.9 9E-27 1.9E-31 263.7 14.8 184 4-229 38-234 (290)
456 TIGR03522 GldA_ABC_ATP gliding 99.9 7.7E-27 1.7E-31 265.7 14.3 184 4-230 33-221 (301)
457 PRK11629 lolD lipoprotein tran 99.9 9.8E-27 2.1E-31 255.9 14.4 181 4-226 40-230 (233)
458 PRK13643 cbiO cobalt transport 99.9 1.1E-26 2.4E-31 262.7 14.8 195 4-241 37-247 (288)
459 cd03263 ABC_subfamily_A The AB 99.9 7.6E-27 1.6E-31 254.7 12.7 182 4-228 33-219 (220)
460 TIGR01846 type_I_sec_HlyB type 99.9 3.5E-27 7.6E-32 299.7 10.9 187 4-230 488-680 (694)
461 PRK09473 oppD oligopeptide tra 99.9 1.3E-26 2.9E-31 265.6 14.6 190 4-230 47-251 (330)
462 PRK13657 cyclic beta-1,2-gluca 99.9 4.9E-27 1.1E-31 293.2 11.6 187 4-230 366-558 (588)
463 PRK13631 cbiO cobalt transport 99.9 1.5E-26 3.2E-31 264.1 14.6 195 4-241 57-279 (320)
464 cd03269 ABC_putative_ATPase Th 99.9 1.1E-26 2.3E-31 251.6 12.7 177 4-223 31-210 (210)
465 PRK11831 putative ABC transpor 99.9 1.9E-26 4.1E-31 258.8 14.8 186 4-229 38-232 (269)
466 TIGR01184 ntrCD nitrate transp 99.9 1.3E-26 2.9E-31 253.9 13.3 184 4-228 16-202 (230)
467 cd03278 ABC_SMC_barmotin Barmo 99.9 1.8E-26 4E-31 245.2 13.9 168 647-847 14-192 (197)
468 cd03266 ABC_NatA_sodium_export 99.9 1.1E-26 2.4E-31 253.1 12.4 178 4-223 36-218 (218)
469 TIGR03415 ABC_choXWV_ATP choli 99.9 1.9E-26 4E-31 266.5 14.8 186 4-230 55-254 (382)
470 TIGR00960 3a0501s02 Type II (G 99.9 1.1E-26 2.4E-31 252.6 12.2 174 4-219 34-216 (216)
471 cd03224 ABC_TM1139_LivF_branch 99.9 1.4E-26 3.1E-31 253.0 13.2 182 4-229 31-220 (222)
472 TIGR02315 ABC_phnC phosphonate 99.9 1.4E-26 3E-31 256.7 13.2 192 4-228 33-233 (243)
473 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 1.3E-26 2.8E-31 252.4 12.7 174 4-219 35-218 (218)
474 PRK13650 cbiO cobalt transport 99.9 2.3E-26 4.9E-31 259.2 14.9 184 4-229 38-228 (279)
475 PRK15079 oligopeptide ABC tran 99.9 2.4E-26 5.1E-31 263.4 15.2 187 4-229 52-250 (331)
476 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 2.8E-26 6.1E-31 252.7 15.1 185 4-230 32-221 (236)
477 cd03268 ABC_BcrA_bacitracin_re 99.9 1.3E-26 2.9E-31 250.4 11.9 174 4-223 31-208 (208)
478 TIGR00972 3a0107s01c2 phosphat 99.9 2.5E-26 5.4E-31 255.0 13.9 183 4-229 32-231 (247)
479 PRK10771 thiQ thiamine transpo 99.9 3E-26 6.6E-31 251.8 14.2 186 4-230 30-219 (232)
480 TIGR02203 MsbA_lipidA lipid A 99.9 7.1E-27 1.5E-31 291.8 10.3 188 4-230 363-556 (571)
481 PRK09493 glnQ glutamine ABC tr 99.9 2.7E-26 5.9E-31 253.6 13.4 184 4-229 32-224 (240)
482 PRK13635 cbiO cobalt transport 99.9 4.6E-26 1E-30 256.4 15.2 185 4-230 38-229 (279)
483 PRK13636 cbiO cobalt transport 99.9 3.4E-26 7.3E-31 258.3 13.9 186 4-230 37-231 (283)
484 PRK13647 cbiO cobalt transport 99.9 4.6E-26 1E-30 255.9 14.9 183 4-228 36-225 (274)
485 TIGR01842 type_I_sec_PrtD type 99.9 1.4E-26 3E-31 286.2 11.7 188 4-230 349-542 (544)
486 PRK14247 phosphate ABC transpo 99.9 4.8E-26 1E-30 253.3 14.8 185 4-229 34-233 (250)
487 cd03233 ABC_PDR_domain1 The pl 99.9 3.7E-26 8E-31 245.0 13.4 157 4-223 38-202 (202)
488 cd03298 ABC_ThiQ_thiamine_tran 99.9 2.8E-26 6E-31 248.5 12.6 179 4-223 29-211 (211)
489 PRK09536 btuD corrinoid ABC tr 99.9 2.4E-26 5.2E-31 267.8 12.8 188 4-229 34-227 (402)
490 PRK13646 cbiO cobalt transport 99.9 2.8E-26 6.1E-31 259.3 12.9 185 4-230 38-235 (286)
491 cd03264 ABC_drug_resistance_li 99.9 2.7E-26 5.8E-31 248.6 12.0 177 4-223 30-211 (211)
492 cd03299 ABC_ModC_like Archeal 99.9 6.9E-26 1.5E-30 249.2 15.3 186 4-230 30-219 (235)
493 TIGR02770 nickel_nikD nickel i 99.9 4.7E-26 1E-30 249.9 13.8 185 4-229 17-214 (230)
494 PRK10789 putative multidrug tr 99.9 1.4E-26 3E-31 287.3 10.8 187 4-230 346-538 (569)
495 COG4138 BtuD ABC-type cobalami 99.9 6.5E-27 1.4E-31 227.1 5.8 195 645-857 14-218 (248)
496 PRK10895 lipopolysaccharide AB 99.9 5.3E-26 1.2E-30 251.5 14.0 185 4-229 34-225 (241)
497 PRK11264 putative amino-acid A 99.9 5.2E-26 1.1E-30 253.1 13.9 184 4-229 34-232 (250)
498 PRK11308 dppF dipeptide transp 99.9 6.9E-26 1.5E-30 259.4 15.0 187 4-230 46-244 (327)
499 PRK14257 phosphate ABC transpo 99.9 6E-26 1.3E-30 259.9 14.5 187 4-229 113-312 (329)
500 PRK11247 ssuB aliphatic sulfon 99.9 4E-26 8.7E-31 253.1 12.4 174 4-226 43-219 (257)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.5e-196 Score=1779.49 Aligned_cols=1172 Identities=47% Similarity=0.811 Sum_probs=1054.9
Q ss_pred CCCCCCCCCCcchhhccccee------EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCch
Q 000937 2 SSLNDRIGFGLSVISWFCTGL------VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRA 75 (1218)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~g~------~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~ 75 (1218)
-.++||||||||+|.+-..|. .+|+|+|||++.++...++.++|++|+|+|+|.|||||||+||++||+++.+.
T Consensus 144 ~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~ 223 (1391)
T KOG0065|consen 144 TLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRY 223 (1391)
T ss_pred EEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCcccc
Confidence 357899999999999999984 35789999999999888889999999999999999999999999999987764
Q ss_pred hhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhh
Q 000937 76 DILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLV 155 (1218)
Q Consensus 76 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~ 155 (1218)
+ +.+|+|+.+ ..+|+++++|||+||+||+|||+.+||+||||||||||| |+++
T Consensus 224 ~---~~~R~e~~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~-E~~v 276 (1391)
T KOG0065|consen 224 D---EVSRREKLA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIG-EMLV 276 (1391)
T ss_pred c---cccHHHHHH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeee-eeee
Confidence 3 445555421 157999999999999999999999999999999999999 9999
Q ss_pred CCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhC
Q 000937 156 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESC 235 (1218)
Q Consensus 156 ~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~l 235 (1218)
.|++++||||+|+||||+|+++++++||++++..++|.+++||||+++++++||+|++|++|++||+||++++++||+++
T Consensus 277 ~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~ 356 (1391)
T KOG0065|consen 277 GPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDM 356 (1391)
T ss_pred cCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC-------cCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCccccccccc
Q 000937 236 GFRCPDRKA-------VISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSL 308 (1218)
Q Consensus 236 G~~~p~~~~-------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1218)
||.||++++ ++++.++.++|...+.+....+++++.+.|.+++.+++...+.+.+.++.+..+.....+.+.+
T Consensus 357 Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v 436 (1391)
T KOG0065|consen 357 GFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSV 436 (1391)
T ss_pred CccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceec
Confidence 999999998 5666677777776666666677899999999999999999888887777766666677788999
Q ss_pred cHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhhh
Q 000937 309 SRWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSL 388 (1218)
Q Consensus 309 s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~ 388 (1218)
+.|.|++.|++|.+...+||..++..++++.+++|+++|++|++... .+..+.+.+.+++||++++.+++++++++..+
T Consensus 437 ~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~-~t~~~~~~~~~~lffsll~~~f~~laEi~~~~ 515 (1391)
T KOG0065|consen 437 PYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM-STTSGGYSRGGALFFALLFNLFNGLAEIALTF 515 (1391)
T ss_pred cHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC-cccccchhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999998773 34446788999999999999999999999999
Q ss_pred hccceeeecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHh---hhHHHHHH
Q 000937 389 ERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIE---SSVDHCAE 465 (1218)
Q Consensus 389 ~~r~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~---~~~~~~~~ 465 (1218)
+++|+|+|||...+|++|++.++.+++++|+.++..++|.+|+||++||.+++.+||. +++++++++ ++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~--~fL~lf~~~~~~s~lFr~ia 593 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFI--QFLFLFLCQFCMSGLFRFIA 593 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 888887766 88999999
Q ss_pred hcccchhhhhhHhhhhhhhHHHHHHhhhccceecCCcchhhhhhccccccc-------------------C---------
Q 000937 466 TLKIDQFMCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKIL-------------------F--------- 517 (1218)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~-------------------~--------- 517 (1218)
+++++.. .|+..+++.+++..+++||.+|...||+|+.|..|.++. .
T Consensus 594 ~l~~t~~-----~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~ 668 (1391)
T KOG0065|consen 594 SLSRTLS-----IANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNI 668 (1391)
T ss_pred HhcchHH-----HHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCccccc
Confidence 9999999 999999999999999999999999999998888776642 0
Q ss_pred ---C------CcccHHHhhhccCcc-----cCCcchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccCCccccc
Q 000937 518 ---T------NTTIGREILKSRGLN-----FDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQ 583 (1218)
Q Consensus 518 ---~------~~~~G~~~l~~~~~~-----~~~~~~~~~~~~l~~~~i~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 583 (1218)
. ..+.|..+++..+|- +...|+|+++++++||.++|.+++.+++.++++....++....++.....
T Consensus 669 ~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~ 748 (1391)
T KOG0065|consen 669 SIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKK 748 (1391)
T ss_pred ccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhh
Confidence 0 134677888877765 77889999999999999999999999999999987776664433222111
Q ss_pred ccC-CCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEE
Q 000937 584 RSK-GSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALM 662 (1218)
Q Consensus 584 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~ 662 (1218)
... .+.... .+......+.+.+.+..|..+..++++||.+-++.+.+.+.+ .+++++|+|||+.++||.++|||
T Consensus 749 ~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~q----G~~~qLL~~V~G~~kPG~LTALM 823 (1391)
T KOG0065|consen 749 KVKSAGSSSE-IEKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQ----GGTRQLLNNVSGAFKPGVLTALM 823 (1391)
T ss_pred cchhcccccc-ccccccccccccccccCCCccccccccceEEEEeCCcccccc----ccceEhhhcCceEecCCceeehh
Confidence 000 000000 000000001123345566667777777777777665544332 35789999999999999999999
Q ss_pred cCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHH
Q 000937 663 GVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKA 742 (1218)
Q Consensus 663 G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~ 742 (1218)
|+||||||||||+|+||...|.++|+|++||.|..+..++|.+|||.|+|.|.+.+||+|.|.|+|.||++.+.+.+++.
T Consensus 824 G~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~ 903 (1391)
T KOG0065|consen 824 GESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKY 903 (1391)
T ss_pred cCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHH
Confidence 99999999999999999988889999999999988788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 000937 743 DCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANP-SIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT 821 (1218)
Q Consensus 743 ~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p-~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~t 821 (1218)
+.++++++.++|++++|.+||.+| +|||.+||||++||.+|+.+| .||||||||||||+.++..|++.+|++++.|+|
T Consensus 904 ~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqt 982 (1391)
T KOG0065|consen 904 EYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQT 982 (1391)
T ss_pred HHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCe
Confidence 999999999999999999999999 899999999999999999999 899999999999999999999999999999999
Q ss_pred EEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCCchhhhhhhhcCCCCCCCCCCCCCCcceeeecccchhhhhhhcH
Q 000937 822 IVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSASTEAELGLDF 901 (1218)
Q Consensus 822 vi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~ 901 (1218)
|+||+|||+.++++.||++++|++||++||.||++++++++++||++++|.+ |+...|||||++|+++...+.+...||
T Consensus 983 IlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~ 1061 (1391)
T KOG0065|consen 983 ILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDF 1061 (1391)
T ss_pred EEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccH
Confidence 9999999999999999999999999999999999999999999999998875 676679999999999988888788899
Q ss_pred HHHHHhhHHHHHHHHHHHHhhcCCCC-CCCCcccccccCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHH
Q 000937 902 SQIYEDSLLYENNKELVRQLSTSGGA-ARDLHFTTRFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLL 980 (1218)
Q Consensus 902 ~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~ 980 (1218)
++.|++|++++++++++++++++.+. ..+....++|++|+|.|++.++||+++.+||+|.|+.+|++.+++.|+++|+.
T Consensus 1062 a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~ 1141 (1391)
T KOG0065|consen 1062 AEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFT 1141 (1391)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheee
Confidence 99999999999999999999888777 66667778899999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCchhhHHHHHhHHHHHHHHHhHhhHhhhHhHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 000937 981 FWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALY 1060 (1218)
Q Consensus 981 f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~ 1060 (1218)
||+++ .++++++|.+|++|+++++.+..+...+.+.+..||.+++||+++|+||+.+|++|++++|+|+.++++++|
T Consensus 1142 F~~~g---~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~ 1218 (1391)
T KOG0065|consen 1142 FWKVG---HNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLF 1218 (1391)
T ss_pred eeecC---CcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998 468999999999999999998887777778888899999999999999999999999999999999999999
Q ss_pred hhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcchHhHHHH
Q 000937 1061 VIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLY 1140 (1218)
Q Consensus 1061 ~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~ 1140 (1218)
.+++|+++||.+++.+|++|++.+++..++.+++|+|+.+++||.++|+.+.+++..++.+|||+++|++.||.||+|+|
T Consensus 1219 ~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy 1298 (1391)
T KOG0065|consen 1219 FLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMY 1298 (1391)
T ss_pred heeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHhhCCCccceeecc-------ccccHHHHHHhhhC----CCcchhHHHHHHHHHHHHHHHHHHHHH
Q 000937 1141 YLSPTSWTLEGLLTSQYGDIDKEIMVFI-------ENKTIASFLEEYFG----FHHDHLAVVAVALIVFPVVLASLFAFF 1209 (1218)
Q Consensus 1141 y~sp~~y~~~~l~~~ef~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~ 1209 (1218)
|+||+.|.+++++..+++|.+..|...+ ...++++|+..++| |.++.......+.+++.+++.+++.+.
T Consensus 1299 ~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~ 1378 (1391)
T KOG0065|consen 1299 YLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFN 1378 (1391)
T ss_pred ecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHH
Confidence 9999999999999999999888775433 22789999999999 877777667777788999999999999
Q ss_pred HHhcccccC
Q 000937 1210 VGRLNFQQR 1218 (1218)
Q Consensus 1210 l~~~~~~~r 1218 (1218)
++|.++++|
T Consensus 1379 ~~y~~~wrn 1387 (1391)
T KOG0065|consen 1379 IKYLNFWRN 1387 (1391)
T ss_pred HHHHHHHHh
Confidence 999999886
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.9e-187 Score=1828.37 Aligned_cols=1207 Identities=49% Similarity=0.906 Sum_probs=1040.6
Q ss_pred CCCCCCCCCcchhhccccee------EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 3 SLNDRIGFGLSVISWFCTGL------VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g~------~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
-|.|+||||||||.+...|. ++|+|++||++.++...++.++||+|+|.|+|++||+|||.|+++|++++.+.+
T Consensus 195 ~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~ 274 (1470)
T PLN03140 195 LLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYD 274 (1470)
T ss_pred EEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCccc
Confidence 47899999999999999884 389999999999876667789999999999999999999999999997665444
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
++.+.+++++++++.|+++++.++|++...+...+..++++++.+||++|+||.||+...|||||||||||+||++++.+
T Consensus 275 ~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~ 354 (1470)
T PLN03140 275 LLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGP 354 (1470)
T ss_pred chhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCC
Confidence 44455667776666677778878887766666666678999999999999999999999999999999999999887776
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCC
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCG 236 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG 236 (1218)
| +||||||||+|||+.++.++++.|+++++..|+|+|+++|||+++++++||+|++|++|+++|+||++++++||+++|
T Consensus 355 p-~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lG 433 (1470)
T PLN03140 355 T-KTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCG 433 (1470)
T ss_pred C-cEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcC
Confidence 6 899999999999999999999999999987799999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC-------cCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCcccccccccc
Q 000937 237 FRCPDRKA-------VISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLS 309 (1218)
Q Consensus 237 ~~~p~~~~-------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 309 (1218)
|.||+++| ++++.+++++|.....|....+++++.+.|++++.+++..++.+.+..+....+.......+..+
T Consensus 434 f~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s 513 (1470)
T PLN03140 434 FKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVP 513 (1470)
T ss_pred CCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCC
Confidence 99999999 44554444454333334444678899999999988777766655444332222222234568889
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCcc-chhhhhhhHHHHHHHHHHHHhhhcchhhhh
Q 000937 310 RWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVD-VFHANYFMGSLFYTLVILIVDGISEIPMSL 388 (1218)
Q Consensus 310 ~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~-~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~ 388 (1218)
++.|++.|++|+++..+||+..+..++++.+++|+++|++||+.+.+.. ....+.+.|++||++++.+++++.+++.++
T Consensus 514 ~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~ 593 (1470)
T PLN03140 514 KMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMI 593 (1470)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998875433 234567789999999999999999999999
Q ss_pred hccceeeecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHh---hhHHHHHH
Q 000937 389 ERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIE---SSVDHCAE 465 (1218)
Q Consensus 389 ~~r~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~---~~~~~~~~ 465 (1218)
.+|++|+|||..++|++++|+++++++++|+.++.+++|++|+|||+||++++.+||. |+++++++. ++++++++
T Consensus 594 ~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~--f~l~~~l~~~~~~~l~~~i~ 671 (1470)
T PLN03140 594 QRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFK--QLLLVFLIQQMAAGIFRLIA 671 (1470)
T ss_pred hccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 776666655 78899999
Q ss_pred hcccchhhhhhHhhhhhhhHHHHHHhhhccceecCCcchhhhhhccccccc--------------C--C-------Cccc
Q 000937 466 TLKIDQFMCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKIL--------------F--T-------NTTI 522 (1218)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~--------------~--~-------~~~~ 522 (1218)
++++++. .|+.++++.++++++|+||+++.++||+|+.|..|.++. + . ....
T Consensus 672 a~~~~~~-----~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~ 746 (1470)
T PLN03140 672 SVCRTMI-----IANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRL 746 (1470)
T ss_pred HHcCcHH-----HHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCccc
Confidence 9999999 999999999999999999999999999998888887652 0 0 1347
Q ss_pred HHHhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccCCcccccccC----------CCCC--
Q 000937 523 GREILKSRGLNFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSK----------GSCD-- 590 (1218)
Q Consensus 523 G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-- 590 (1218)
|..+|+.+++..++.|+|+++++++++.++|.+++++++++.++...........+........ +...
T Consensus 747 G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1470)
T PLN03140 747 GTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTR 826 (1470)
T ss_pred HHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccccccccccccc
Confidence 9999999999988889999999999999999999999999988644433322111100000000 0000
Q ss_pred -CC----c-ccc-----ccC----CCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeC
Q 000937 591 -DE----H-VED-----VDM----NAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRP 655 (1218)
Q Consensus 591 -~~----~-~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~ 655 (1218)
.. . .+. ... .......+..+|..+..++|+||+|.++.+.+.++.. ...+++++|+|||++++|
T Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~-~~~~~~~iL~~vs~~i~~ 905 (1470)
T PLN03140 827 EVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQG-VTEDRLQLLREVTGAFRP 905 (1470)
T ss_pred cccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccc-cCcCCceEeeCcEEEEEC
Confidence 00 0 000 000 0001112334577788999999999998764422110 012346799999999999
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCC
Q 000937 656 GVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQ 735 (1218)
Q Consensus 656 Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~ 735 (1218)
||++||+||||||||||||+|+|+.+++..+|+|.+||.+.....+++.+|||+|+|.+++.+||+|||.|++.++.+..
T Consensus 906 Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~ 985 (1470)
T PLN03140 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE 985 (1470)
T ss_pred CeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999977666789999999886544456779999999999999999999999988876655
Q ss_pred CChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000937 736 INSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815 (1218)
Q Consensus 736 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 815 (1218)
.+.+++.++++++++.++|.++.|+.+|.+++++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++
T Consensus 986 ~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l 1065 (1470)
T PLN03140 986 VSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1065 (1470)
T ss_pred CCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 55556667899999999999999999998877899999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCCchhhhhhhhcCCCCCCCCCCCCCCcceeeecccchhh
Q 000937 816 ADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSASTEA 895 (1218)
Q Consensus 816 ~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~ 895 (1218)
+++|+|||+++|||+.++++.||++++|.+||+++|+|++++..+++++||++++|.|+||+++|||||++|+++...+.
T Consensus 1066 ~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~ 1145 (1470)
T PLN03140 1066 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV 1145 (1470)
T ss_pred HHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc
Confidence 98899999999999877899999999998679999999998877889999999878778999999999999999876555
Q ss_pred hhhhcHHHHHHhhHHHHHHHHHHHHhhcCCCCCCCCcccccccCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHH
Q 000937 896 ELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASF 975 (1218)
Q Consensus 896 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l 975 (1218)
....||++.|++|+++++..+.++++..+.+...+.....+++.++|+|+++|++|+++++||||.++.+|+++++++|+
T Consensus 1146 ~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al 1225 (1470)
T PLN03140 1146 KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAAL 1225 (1470)
T ss_pred cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHH
Confidence 55568999999999998887777666554444333334567889999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCchhhHHHHHhHHHHHHHHHhHhhHhhhHhHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHH
Q 000937 976 LFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLI 1055 (1218)
Q Consensus 976 ~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~ 1055 (1218)
++|++||+++++..++++++++.|++|++++++++.++++++|.+..||++|+||+++|+|++++|++|++++|+|+.++
T Consensus 1226 ~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~ 1305 (1470)
T PLN03140 1226 MVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLI 1305 (1470)
T ss_pred HHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999998766778999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcchH
Q 000937 1056 QAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKW 1135 (1218)
Q Consensus 1056 ~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~ 1135 (1218)
.+++|.+|+|||+||++++.+||+|+++++++.++++++|+++++++|+.++|..+++++++++++|+||++|+++||+|
T Consensus 1306 ~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~ 1385 (1470)
T PLN03140 1306 QTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKW 1385 (1470)
T ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhCHHHHHHHHHHHHhhCCCccceeeccc--cccHHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000937 1136 WIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIE--NKTIASFLEEYFGFHHDHLAVVAVALIVFPVVLASLFAFFVGRL 1213 (1218)
Q Consensus 1136 ~~w~~y~sp~~y~~~~l~~~ef~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~ 1213 (1218)
|+|++|+||++|+++|++.|||+|.+.+|.++|. ..++.+|++++|||+++++|++++|+++|+++|+++++++++++
T Consensus 1386 ~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~ 1465 (1470)
T PLN03140 1386 WVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTL 1465 (1470)
T ss_pred HHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998887777652 25789999999999999999999999999999999999999999
Q ss_pred ccccC
Q 000937 1214 NFQQR 1218 (1218)
Q Consensus 1214 ~~~~r 1218 (1218)
|||||
T Consensus 1466 ~~q~r 1470 (1470)
T PLN03140 1466 NFQTR 1470 (1470)
T ss_pred hcccC
Confidence 99998
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.1e-166 Score=1638.31 Aligned_cols=1156 Identities=30% Similarity=0.487 Sum_probs=946.9
Q ss_pred CCCCCCCCcchhhccccee-------EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL-------VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~-------~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
+.|++|||||||.+...|. .+|+|++||.++++. ..++.++||+|+|.|+|++||+|||.|+++++.+...
T Consensus 92 IlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 171 (1394)
T TIGR00956 92 VLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNR 171 (1394)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCC
Confidence 6799999999999999985 589999999987643 2355689999999999999999999999998753211
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
. ...+++++. +..++.+++.+||++++||+||+..+|||||||||||+||++++
T Consensus 172 ~---~~~~~~~~~-----------------------~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 172 P---DGVSREEYA-----------------------KHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred C---CCCCHHHHH-----------------------HHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 0 011111111 11246789999999999999999999999999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHh
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFES 234 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~ 234 (1218)
.+| +|++|||||||||+.++.++++.|++++++.|+|+|+++|||+++++++||+|++|++|+++|+|+++++.+||++
T Consensus 226 ~~p-~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~ 304 (1394)
T TIGR00956 226 GGA-KIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEK 304 (1394)
T ss_pred hCC-CEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHH
Confidence 888 7999999999999999999999999999877899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC-------cCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhc-------------
Q 000937 235 CGFRCPDRKA-------VISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKS------------- 294 (1218)
Q Consensus 235 lG~~~p~~~~-------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~------------- 294 (1218)
+||.||+++| +.++.+ .+.+. ..+.....+.+++.+.|++|+.+++..++.+....+.
T Consensus 305 lG~~~p~~~n~aDfl~~~~~~~~-~~~~~-~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1394)
T TIGR00956 305 MGFKCPDRQTTADFLTSLTSPAE-RQIKP-GYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESH 382 (1394)
T ss_pred cCCCCCCCCChHHHHHhccChhh-hhccc-cccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHH
Confidence 9999999998 233322 11111 1111234567889999999987766655543321110
Q ss_pred --ccccCccccccccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHH
Q 000937 295 --ESKKSSVSFAVFSLSRWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYT 372 (1218)
Q Consensus 295 --~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~ 372 (1218)
...+.......+..++++|+..|++|+++..+||+..+..++++.+++|+++|++||+.+. +..+.+.+.|++|++
T Consensus 383 ~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~--~~~~~~~r~g~lf~~ 460 (1394)
T TIGR00956 383 VAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK--NTSDFYSRGGALFFA 460 (1394)
T ss_pred HhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC--CchhHHHHHHHHHHH
Confidence 0001111233577899999999999999999999999999999999999999999998764 444678899999999
Q ss_pred HHHHHHhhhcchhhhhhccceeeecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHH
Q 000937 373 LVILIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFV 452 (1218)
Q Consensus 373 i~~~~~~~~~~~~~~~~~r~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~ 452 (1218)
+++..+.++.+++.++.+|++|+||+..++|++++|++|++++++|+.++.+++|++|+|||+||++++.+|+. |+++
T Consensus 461 ~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~--f~l~ 538 (1394)
T TIGR00956 461 ILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFF--YLLI 538 (1394)
T ss_pred HHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHH--HHHH
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999998 6666
Q ss_pred HHHHh---hhHHHHHHhcccchhhhhhHhhhhhhhHHHHHHhhhccceecCCcchhhhhhccccccc-------------
Q 000937 453 YFCIE---SSVDHCAETLKIDQFMCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKIL------------- 516 (1218)
Q Consensus 453 ~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~------------- 516 (1218)
+++.. +++++++++++++.. .|+.++++.++++++++||+++.++||.|+.|..|.++.
T Consensus 539 ~~l~~~~~~~~~~~i~a~~~~~~-----~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~ 613 (1394)
T TIGR00956 539 LFICTLAMSHLFRSIGAVTKTLS-----EAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFH 613 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhc
Confidence 66554 788999999999999 999999999999999999999999999997666654431
Q ss_pred ----------C-----------C--C----------cccHHHhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 000937 517 ----------F-----------T--N----------TTIGREILKSRGLNFDEYFFWISLGALFGLALVFNFAFALALSF 563 (1218)
Q Consensus 517 ----------~-----------~--~----------~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~~~~~l~~ 563 (1218)
+ . | ...|+++|+. ++.++..|+|+++++++++.++|.++.++++++
T Consensus 614 ~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~ 692 (1394)
T TIGR00956 614 GRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEF 692 (1394)
T ss_pred CCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0 0 1367788874 444556689999999999999999999999999
Q ss_pred cCCCCCCCcccccCC--cccccccCCC-----CCCCcccc-----ccCCCCC--CCCCcccCCCceEEEEEeEEEEEecC
Q 000937 564 LKPPGSSPAMISHGK--FSGIQRSKGS-----CDDEHVED-----VDMNAHP--NTSQMILPFQPITMVFQDLQYSIDTP 629 (1218)
Q Consensus 564 ~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ 629 (1218)
.++...........+ .....+.... .+.+.... ...+... .......+.....++|+||+|+++.+
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~ 772 (1394)
T TIGR00956 693 NKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK 772 (1394)
T ss_pred ccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEEEecCC
Confidence 885433221111111 0000000000 00000000 0000000 00000001123458999999988532
Q ss_pred chhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCEeCccccccceEEEe
Q 000937 630 LEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKVNGYPKIQETFVRVSGYC 708 (1218)
Q Consensus 630 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v 708 (1218)
++++++|+|||++++|||++||+||||||||||||+|+|+.+++ +.+|+|.+||++... .+++.+|||
T Consensus 773 ----------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv 841 (1394)
T TIGR00956 773 ----------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYV 841 (1394)
T ss_pred ----------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeee
Confidence 13467999999999999999999999999999999999997643 247999999998743 456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000937 709 EQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANP 788 (1218)
Q Consensus 709 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p 788 (1218)
+|+|.+++.+||+||+.|++.++.+...+.+++.++++++++.++|.++.|+.+|.++ .+|||||||||+||++|+.+|
T Consensus 842 ~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia~aL~~~P 920 (1394)
T TIGR00956 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKP 920 (1394)
T ss_pred cccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHHHHHHcCC
Confidence 9999999999999999999988766555556667789999999999999999998654 379999999999999999999
Q ss_pred c-EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCCchhhhhhhh
Q 000937 789 S-IIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFE 867 (1218)
Q Consensus 789 ~-llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~ 867 (1218)
+ ||+|||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|.+||+++++|++++..+++++||+
T Consensus 921 ~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~ 1000 (1394)
T TIGR00956 921 KLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE 1000 (1394)
T ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHH
Confidence 7 999999999999999999999999998889999999999987678899999999876699999999887788999999
Q ss_pred cCCCCCCCCCCCCCCcceeeecccchhhhhhhcHHHHHHhhHHHHHHHHHHHHhhcCCCCCC---CCcccccccCchHHH
Q 000937 868 GIPGVPQIRNNYNPATWMLEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAAR---DLHFTTRFSQNGWGQ 944 (1218)
Q Consensus 868 ~~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q 944 (1218)
.. |.++||+++|||||++|+++...+.....+|.+.|++|+.+++..+.++....+..... ......+++.++|+|
T Consensus 1001 ~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q 1079 (1394)
T TIGR00956 1001 KH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQ 1079 (1394)
T ss_pred hc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHH
Confidence 87 65579999999999999998654433346899999999887766555444332211111 111224688999999
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHhHHHHHHHHHhHhhHhhhHhHHHHhh
Q 000937 945 FKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASER 1024 (1218)
Q Consensus 945 ~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er 1024 (1218)
+++|++|+++++||||.++.+|+++++++|+++|++||++++ +++++++|+|++|+.+++.++. +...+|.++.||
T Consensus 1080 ~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r 1155 (1394)
T TIGR00956 1080 FKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQR 1155 (1394)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHH
Confidence 999999999999999999999999999999999999999975 4678999999999988877765 345667788888
Q ss_pred HHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHH-------HHHHHHHHHHHHHHHHHHHH
Q 000937 1025 TVM-YREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYK-------IFWNFYGIFCSMMSFSYLGL 1096 (1218)
Q Consensus 1025 ~v~-~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~-------f~~~~~~~~~~~~~~~~~~~ 1096 (1218)
.+| +||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+||++++.. |++|++++++..++++++|+
T Consensus 1156 ~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~ 1235 (1394)
T TIGR00956 1156 DLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQ 1235 (1394)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 886 8999999999999999999999999999999999999999999988765 99999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcchHhHHHHhhCHHHHHHHHHHHHhhCCCccceee----------
Q 000937 1097 LLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMV---------- 1166 (1218)
Q Consensus 1097 ~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~y~sp~~y~~~~l~~~ef~~~~~~~~~---------- 1166 (1218)
++++++|+..+|+.++++++.++++|+||++++++||.||+|++|+||++|+++|++.|||++.+..|..
T Consensus 1236 ~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~ 1315 (1394)
T TIGR00956 1236 MVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPS 1315 (1394)
T ss_pred HHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988755421
Q ss_pred ---------------------cc---cc-----ccHHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000937 1167 ---------------------FI---EN-----KTIASFLEEYFGFHHDHLAVVAVALIVFPVVLASLFAFFVGRLNFQQ 1217 (1218)
Q Consensus 1167 ---------------------~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~ 1217 (1218)
|+ .| .++.+|+ +.+|++.+++|+|++|+++|++++ +++++++.+..+.+
T Consensus 1316 ~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l-~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956 1316 GQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFL-EPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARVP 1393 (1394)
T ss_pred CCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHH-HHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEEcC
Confidence 00 01 2455555 578999999999999999999888 88888888875544
No 4
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.4e-96 Score=896.86 Aligned_cols=583 Identities=33% Similarity=0.580 Sum_probs=505.1
Q ss_pred CceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEE
Q 000937 613 QPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKV 691 (1218)
Q Consensus 613 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~ 691 (1218)
.++.+.|+|++++.+.+.. ..+++|+|||++++|||++||||||||||||||++|+|+...+ ..+|+|++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~---------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilv 92 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK---------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILL 92 (613)
T ss_pred ccceeEEEEEEEEecCCCC---------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEE
Confidence 4578899999998864321 3578999999999999999999999999999999999998764 57999999
Q ss_pred CCEeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 692 NGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 692 ~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
||++...+.+++.+|||+|+|.++|++||+|+|.|+|.+|++...+.++++++++++++.+||.+++|+++|+.+.+++|
T Consensus 93 NG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiS 172 (613)
T KOG0061|consen 93 NGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLS 172 (613)
T ss_pred CCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccc
Confidence 99887777888999999999999999999999999999999988888999999999999999999999999998889999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|. .|+++|
T Consensus 173 GGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs-~G~~vy 251 (613)
T KOG0061|consen 173 GGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLS-EGEVVY 251 (613)
T ss_pred cchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhc-CCcEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 589999
Q ss_pred EcCCCCCchhhhhhhhcCCCCCCCCCCCCCCcceeeecccc-hhhhhhhcHHHHHHhhHHHH--H-HHHHHHHhhcCCCC
Q 000937 852 SGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSAS-TEAELGLDFSQIYEDSLLYE--N-NKELVRQLSTSGGA 927 (1218)
Q Consensus 852 ~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~-~~~~~~~~~~~~~~~s~~~~--~-~~~~~~~~~~~~~~ 927 (1218)
+|++ +++.+||+.. |.| ||++.|||||++|+++.+ ..+.. .+..+.++....++ . ..+...........
T Consensus 252 ~G~~----~~~~~ff~~~-G~~-~P~~~Npadf~l~l~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (613)
T KOG0061|consen 252 SGSP----RELLEFFSSL-GFP-CPELENPADFLLDLLSVDSGTREL-EEAVRIAKLINKFSQTDNLKKTLEALEKSLST 324 (613)
T ss_pred ecCH----HHHHHHHHhC-CCC-CCCcCChHHHHHHHHccCCCchhH-HhHHHHHHHhhhccccchhhhhHHHHhhhccc
Confidence 9998 5789999998 664 999999999999998853 11110 11111111111000 0 00000000000000
Q ss_pred CCCCcccccccCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHhHHHHHHHH
Q 000937 928 ARDLHFTTRFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIF 1007 (1218)
Q Consensus 928 ~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~ 1007 (1218)
..+ .+.....+||.|++.+++|.+++.+|||.+...|+++.+++|+++|++||++++ +..+++++.|++|+.+.+
T Consensus 325 ~~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~~~~ 399 (613)
T KOG0061|consen 325 SKK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFILSF 399 (613)
T ss_pred ccc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHHHHH
Confidence 111 111126899999999999999999999999999999999999999999999965 456677999999999999
Q ss_pred HhHhhHhhhHhHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHH
Q 000937 1008 LGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCS 1087 (1218)
Q Consensus 1008 ~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~ 1087 (1218)
+.+..+...++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|++|+|||+|++++..+|++|++++++.
T Consensus 400 ~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~ 479 (613)
T KOG0061|consen 400 MTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLS 479 (613)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 98988888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcchHhHHHHhhCHHHHHHHHHHHHhhCCCccceeec
Q 000937 1088 MMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVF 1167 (1218)
Q Consensus 1088 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~y~sp~~y~~~~l~~~ef~~~~~~~~~~ 1167 (1218)
.++++++|++++++.||...|+.+++++++++++|+||+++.++||.||+|++|+|+++|++|+++.|||++....|...
T Consensus 480 ~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~ 559 (613)
T KOG0061|consen 480 SLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLS 559 (613)
T ss_pred HHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999732333211
Q ss_pred --ccc-ccHHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000937 1168 --IEN-KTIASFLEEYFGFHHDHLAVVAVALIVFPVVLASLFAFFVGRLNFQQR 1218 (1218)
Q Consensus 1168 --~~~-~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1218 (1218)
..+ .++.+ ++...+++.++.|.|+.++++++++||+++|++|++-.+.+|
T Consensus 560 ~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 560 GNLCCESTGED-VLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cCCcccccHHH-HHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 112 34444 556799999999999999999999999999999998766554
No 5
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.2e-94 Score=894.31 Aligned_cols=584 Identities=27% Similarity=0.455 Sum_probs=481.9
Q ss_pred CceEEEEEeEEEEEecCchhh----------------hhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHH
Q 000937 613 QPITMVFQDLQYSIDTPLEMR----------------RRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVL 676 (1218)
Q Consensus 613 ~~~~~~~~~l~~~~~~~~~~~----------------~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l 676 (1218)
.++.++|.|++|+++...... +... ..+++++|+|+|+++++||++||+||||||||||||+|
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iL 114 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETR-QIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNAL 114 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccc-cCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHH
Confidence 368899999999986442000 0000 11246799999999999999999999999999999999
Q ss_pred hCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc
Q 000937 677 AGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756 (1218)
Q Consensus 677 ~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 756 (1218)
+|+.+++..+|+|.+||++.... .++.++||+|++.+++.+||+||+.|++.++.+.....+++.++++++++.+||.+
T Consensus 115 aG~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 193 (659)
T PLN03211 115 AGRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK 193 (659)
T ss_pred hCCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh
Confidence 99877644689999999986432 34568999999999999999999999887765544445556677899999999999
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh
Q 000937 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFES 836 (1218)
Q Consensus 757 ~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~ 836 (1218)
+.|+.+|+...++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.
T Consensus 194 ~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~ 273 (659)
T PLN03211 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQM 273 (659)
T ss_pred hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh
Confidence 99999988777899999999999999999999999999999999999999999999999888999999999998778999
Q ss_pred hceEEEEecCCEEEEEcCCCCCchhhhhhhhcCCCCCCCCCCCCCCcceeeecccchhh------h---hhhcHHHHHHh
Q 000937 837 FDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSASTEA------E---LGLDFSQIYED 907 (1218)
Q Consensus 837 ~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~------~---~~~~~~~~~~~ 907 (1218)
+|++++|. +|++++.|++ +++.+||+.+ |. +||.++|||||++|+++.+.+. . ......+.|++
T Consensus 274 ~D~iilL~-~G~iv~~G~~----~~~~~~f~~~-G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (659)
T PLN03211 274 FDSVLVLS-EGRCLFFGKG----SDAMAYFESV-GF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNT 346 (659)
T ss_pred hceEEEec-CCcEEEECCH----HHHHHHHHHC-CC-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHh
Confidence 99999997 6999999997 5789999998 55 5999999999999998753210 0 00112234432
Q ss_pred hHHHHHHHHHHHH--hhcCCC------CCCCCc-ccccccCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHH
Q 000937 908 SLLYENNKELVRQ--LSTSGG------AARDLH-FTTRFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFG 978 (1218)
Q Consensus 908 s~~~~~~~~~~~~--~~~~~~------~~~~~~-~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G 978 (1218)
.. .++..+..+. ...... ..+... ....+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|
T Consensus 347 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G 424 (659)
T PLN03211 347 LL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAG 424 (659)
T ss_pred hc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHH
Confidence 11 1111111110 000000 000000 11224578999999999999988 8999999999999999999999
Q ss_pred HHhccCCCCCCchhhHHHHHhHHHHHHHHHhHhhHhhhHhHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHH
Q 000937 979 LLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAA 1058 (1218)
Q Consensus 979 ~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~ 1058 (1218)
++||+++ ..++++|.|++||+++++++.+++.+++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.++
T Consensus 425 ~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~ 499 (659)
T PLN03211 425 LMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPT 499 (659)
T ss_pred HHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999984 45789999999999999888888888999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcchHhHH
Q 000937 1059 LYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIW 1138 (1218)
Q Consensus 1059 ~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w 1138 (1218)
+|++|+|||+||++++.+||+|++++++..++++++|+++++++|+..+|+.+++++++++++|+||+++ +||+||+|
T Consensus 500 if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W 577 (659)
T PLN03211 500 IFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAW 577 (659)
T ss_pred HHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 79999999
Q ss_pred HHhhCHHHHHHHHHHHHhhCCCcc-----ceeecc-ccccHHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 000937 1139 LYYLSPTSWTLEGLLTSQYGDIDK-----EIMVFI-ENKTIASFLEEYFGFHHDHLAVVAVALIVFPVVLASLFAFFVGR 1212 (1218)
Q Consensus 1139 ~~y~sp~~y~~~~l~~~ef~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~ 1212 (1218)
++|+||++|++|+++.|||++.+. +|..+. .......++ ...+++....|.++++|++|+++||+++|++|++
T Consensus 578 ~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~ 656 (659)
T PLN03211 578 IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFV-EEDVAGQISPATSVSVLIFMFVGYRLLAYLALRR 656 (659)
T ss_pred HHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccc-hhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999986532 342111 000111122 2234455678999999999999999999999998
Q ss_pred ccc
Q 000937 1213 LNF 1215 (1218)
Q Consensus 1213 ~~~ 1215 (1218)
.+|
T Consensus 657 ~~~ 659 (659)
T PLN03211 657 IKH 659 (659)
T ss_pred ccC
Confidence 876
No 6
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2e-94 Score=895.18 Aligned_cols=567 Identities=31% Similarity=0.502 Sum_probs=495.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCEeCccccccceEEEeccCCCCCCCCC
Q 000937 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHIT 719 (1218)
Q Consensus 641 ~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 719 (1218)
+++++|+|+|++++|||+++|+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 4578999999999999999999999999999999999987654 357999999998765556788999999999999999
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000937 720 IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPG-VSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798 (1218)
Q Consensus 720 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~LSgGerqRv~ia~~L~~~p~llllDEPts 798 (1218)
|+||+.|++.++.+.....++++++++++++.+||.++.|+.+|+++ .++|||||||||+||++|+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988877655666777889999999999999999999753 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCCchhhhhhhhcCCCCCCCCCC
Q 000937 799 GLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNN 878 (1218)
Q Consensus 799 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~ 878 (1218)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|. +|+++|+|++ +++.+||+.+ |. +||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~-g~-~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDL-GH-PCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHc-CC-CCCCC
Confidence 9999999999999999998899999999999888999999999998 6999999997 5688999998 55 59999
Q ss_pred CCCCcceeeecccchhhh-----hhhcHHHHHHhhHHHHHHHHHHHHhhcCCC---CCCCCcccccccCchHHHHHHHHH
Q 000937 879 YNPATWMLEVTSASTEAE-----LGLDFSQIYEDSLLYENNKELVRQLSTSGG---AARDLHFTTRFSQNGWGQFKSCLW 950 (1218)
Q Consensus 879 ~npad~~l~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~ 950 (1218)
.|||||++|+++.+.+.+ ...++.+.|++|+.+++..+.........+ .........++..+++.|+++|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999987543211 112445566666555444333221111110 011111223567899999999999
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHhHHHHHHHHHhHhhHhhhHhHHHHhhHHHHHH
Q 000937 951 KQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYRE 1030 (1218)
Q Consensus 951 R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE 1030 (1218)
|++++.||||.++.+|+++++++|+++|++||+++. ++++++++.|++|++++++++.+++...+.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999975 46788999999999999998888888889999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Q 000937 1031 QSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVAST 1110 (1218)
Q Consensus 1031 ~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 1110 (1218)
+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCcchHhHHHHhhCHHHHHHHHHHHHhhCCCcc-ceeec---ccc-ccHHHHHHhhhCCCc
Q 000937 1111 LFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDK-EIMVF---IEN-KTIASFLEEYFGFHH 1185 (1218)
Q Consensus 1111 ~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~y~sp~~y~~~~l~~~ef~~~~~-~~~~~---~~~-~~~~~~~~~~~~~~~ 1185 (1218)
+++++++++++|+||+++.++||+||+|++|+||++|++|+++.|||.+... +|... +.+ .++ +++++.||++.
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g-~~~l~~~g~~~ 584 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSG-EVILETLSFRN 584 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcCh-HHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999998764 44211 112 344 66778999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000937 1186 DHLAVVAVALIVFPVVLASLFAFFVGRLNFQQR 1218 (1218)
Q Consensus 1186 ~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1218 (1218)
++.|+++++|++++++|++++|++|++-.+.+|
T Consensus 585 ~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 585 ADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999998777666
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.8e-92 Score=931.78 Aligned_cols=592 Identities=23% Similarity=0.368 Sum_probs=505.3
Q ss_pred CceEEEEEeEEEEEecCchh--hh-----------hc-----cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 000937 613 QPITMVFQDLQYSIDTPLEM--RR-----------RE-----CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLD 674 (1218)
Q Consensus 613 ~~~~~~~~~l~~~~~~~~~~--~~-----------~~-----~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~ 674 (1218)
+.+.+.|+|+++........ +. .. ...++++++|+|+|+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 46789999999876321110 00 00 01224467999999999999999999999999999999
Q ss_pred HHhCCCCC--CceeeEEEECCEeCcc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCC----CChhhHHHH-H
Q 000937 675 VLAGRKTS--GCFKGEIKVNGYPKIQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQ----INSKTKADC-V 745 (1218)
Q Consensus 675 ~l~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~----~~~~~~~~~-~ 745 (1218)
+|+|+.++ .+.+|+|.+||++... ...++.++|++|+|.+++.+||+||+.|++.++.+.. ...+++.++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99998532 1258999999998642 2345679999999999999999999999988775431 223333333 4
Q ss_pred HHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEE
Q 000937 746 NHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVC 824 (1218)
Q Consensus 746 ~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~ 824 (1218)
+++++.+||.++.|+.+|+..+++|||||||||+||++|+.+|++++|||||+|||+.++..+++.|++++++ |+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6789999999999999998888999999999999999999999999999999999999999999999999875 999999
Q ss_pred EecCCCHHHHHhhceEEEEecCCEEEEEcCCCCCchhhhhhhhcCCCCCCCCCCCCCCcceeeecccchhh---------
Q 000937 825 TIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSASTEA--------- 895 (1218)
Q Consensus 825 ~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~--------- 895 (1218)
++|||+.++++.||++++|. +|+++++|++ +++.+||+.+ |. +||++.|||||++|+++++.+.
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~-~G~iv~~G~~----~~~~~yF~~l-G~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~ 338 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLY-EGYQIYFGPA----DKAKQYFEKM-GF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKV 338 (1394)
T ss_pred EecCCCHHHHHhhceEEEEe-CCeEEEECCH----HHHHHHHHHc-CC-CCCCCCChHHHHHhccChhhhhccccccccC
Confidence 99999878999999999998 5999999997 5789999998 55 6999999999999998764211
Q ss_pred -hhhhcHHHHHHhhHHHHHHHHHHHHhhcCC---------------CCCCCCcccccccCchHHHHHHHHHHHHHHhhcC
Q 000937 896 -ELGLDFSQIYEDSLLYENNKELVRQLSTSG---------------GAARDLHFTTRFSQNGWGQFKSCLWKQHLSYWRT 959 (1218)
Q Consensus 896 -~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~ 959 (1218)
....++++.|++|+.+++..+.++...... ...+.....+.+..|+|+|+++|++|++++.|||
T Consensus 339 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd 418 (1394)
T TIGR00956 339 PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418 (1394)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 123578899999988776654443321110 0001112234578899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHhHHHHHHHHHhHhhHhhhHhHHHHhhHHHHHHhcCCCCChH
Q 000937 960 PSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPL 1039 (1218)
Q Consensus 960 ~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~ 1039 (1218)
|.++.+|+++++++|+++|++||+++. +++++++|.|++||++++.++.++.++ +.+..||+||+||+.+++|+++
T Consensus 419 ~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ 494 (1394)
T TIGR00956 419 PSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPS 494 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHH
Confidence 999999999999999999999999975 457899999999999999999887665 4556799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 000937 1040 AYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTY 1119 (1218)
Q Consensus 1040 ~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 1119 (1218)
+|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.++++++++++++++|+..+|+.+++++++++
T Consensus 495 ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~ 574 (1394)
T TIGR00956 495 ADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLAL 574 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCcchHhHHHHhhCHHHHHHHHHHHHhhCCCccceee------------------------cccc-ccHH
Q 000937 1120 SLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMV------------------------FIEN-KTIA 1174 (1218)
Q Consensus 1120 ~lf~G~~i~~~~ip~~~~w~~y~sp~~y~~~~l~~~ef~~~~~~~~~------------------------~~~~-~~~~ 1174 (1218)
++|+||++|.++||+||+|++|+||++|+|||++.|||++...+|.. +|++ +++.
T Consensus 575 ~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~ 654 (1394)
T TIGR00956 575 SIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGD 654 (1394)
T ss_pred HHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHH
Confidence 99999999999999999999999999999999999999987776631 1112 4677
Q ss_pred HHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000937 1175 SFLEEYFGFHHDHLAVVAVALIVFPVVLASLFAFFVGRLNF 1215 (1218)
Q Consensus 1175 ~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1215 (1218)
+|+...||++.+|+|+|++||++|+++|+++++++++|+++
T Consensus 655 ~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 655 DYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred HHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88887899999999999999999999999999999999874
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.9e-91 Score=917.00 Aligned_cols=594 Identities=25% Similarity=0.389 Sum_probs=498.0
Q ss_pred CceEEEEEeEEEEEecCchhh----------h----hc------cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHH
Q 000937 613 QPITMVFQDLQYSIDTPLEMR----------R----RE------CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTL 672 (1218)
Q Consensus 613 ~~~~~~~~~l~~~~~~~~~~~----------~----~~------~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTL 672 (1218)
..+.+.|+||++........+ + .. ..++.++++|+|+|+.++|||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 457899999999765211100 0 00 012345779999999999999999999999999999
Q ss_pred HHHHhCCCCCC-ceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCC-------CChhhH---
Q 000937 673 LDVLAGRKTSG-CFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQ-------INSKTK--- 741 (1218)
Q Consensus 673 l~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~-------~~~~~~--- 741 (1218)
||+|+|+.++. ..+|+|.+||++..+...++.++||+|+|.+++++||+|||.|++.++.+.. ...+++
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 99999987653 3589999999986543346779999999999999999999999987653211 111111
Q ss_pred ---------------------HHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000937 742 ---------------------ADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGL 800 (1218)
Q Consensus 742 ---------------------~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgL 800 (1218)
+..++++++.+||.++.|+.+|+..+++|||||||||+||++|+.+|++++|||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 12357799999999999999999888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCCchhhhhhhhcCCCCCCCCCCC
Q 000937 801 DARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNY 879 (1218)
Q Consensus 801 D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~ 879 (1218)
|+.++.++++.|+++++ .|+|||+++|||+.++++.||++++|. +|+++|+||+ +++.+||+++ |+ +||++.
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~-~G~ivy~G~~----~~~~~yF~~l-Gf-~cP~~~ 440 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS-EGQIVYQGPR----DHILEFFESC-GF-KCPERK 440 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee-CceEEEeCCH----HHHHHHHHHc-CC-CCCCCC
Confidence 99999999999999987 499999999999889999999999998 5999999997 5789999999 55 599999
Q ss_pred CCCcceeeecccchhh------------hhhhcHHHHHHhhHHHHHHHHHHHHhhcCCCCCCCCcccccccCchHHHHHH
Q 000937 880 NPATWMLEVTSASTEA------------ELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKS 947 (1218)
Q Consensus 880 npad~~l~~~~~~~~~------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 947 (1218)
|||||++|+++..... ....++++.|++|+.+++..+.++.-.......+.....++|..+++.|++.
T Consensus 441 n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~ 520 (1470)
T PLN03140 441 GTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKA 520 (1470)
T ss_pred ChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHH
Confidence 9999999999864321 1134678889988877665443322100000111111234588899999999
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHhHHHHHHHHHhHhhHhhhHhHHHHhhHHH
Q 000937 948 CLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVM 1027 (1218)
Q Consensus 948 l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~ 1027 (1218)
|++|+++..+||+.++..|+++.+++|+++|++||+++.+..+..+.+.+.|++||++++.++.++.+ ++.++.||+||
T Consensus 521 ~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~vf 599 (1470)
T PLN03140 521 CWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALMIQRLPVF 599 (1470)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccchh
Confidence 99999999999999999999999999999999999997654444556778899999998888776544 57778899999
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Q 000937 1028 YREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTV 1107 (1218)
Q Consensus 1028 ~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1107 (1218)
+|||..++|++++|++|++++++|+.++.+++|.+|+|||+||++++++||+|+++++++.++++++++++++++|+..+
T Consensus 600 ~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~ 679 (1470)
T PLN03140 600 YKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMII 679 (1470)
T ss_pred HHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCcchHhHHHHhhCHHHHHHHHHHHHhhCCCccc-eeecccc-ccHHHHHHhhhCCCc
Q 000937 1108 ASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKE-IMVFIEN-KTIASFLEEYFGFHH 1185 (1218)
Q Consensus 1108 a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~y~sp~~y~~~~l~~~ef~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~ 1185 (1218)
|+.+++++++++++|+||++|+++||+||+|++|+||++|++||+++|||.+.... +.+.+.+ .++.+++ +.+|++.
T Consensus 680 A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L-~~~g~~~ 758 (1470)
T PLN03140 680 ANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVL-NIFDVFT 758 (1470)
T ss_pred HHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHH-HhcCcCc
Confidence 99999999999999999999999999999999999999999999999999775432 2222222 4455555 8899975
Q ss_pred c--hhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000937 1186 D--HLAVVAVALIVFPVVLASLFAFFVGRLNF 1215 (1218)
Q Consensus 1186 ~--~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1215 (1218)
+ +.|+++++|++|+++|+++++++|++++.
T Consensus 759 ~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 759 DKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4 56999999999999999999999999873
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.2e-85 Score=800.58 Aligned_cols=566 Identities=27% Similarity=0.454 Sum_probs=501.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCEeCccccccceEEEeccCCCCCCCCC
Q 000937 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHIT 719 (1218)
Q Consensus 641 ~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 719 (1218)
.+.++|+|+|+.++|||++.++||+||||||||++|+|..+.. ...|+|.+||.+......++.++|++|+|.|+|.||
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3457999999999999999999999999999999999965432 236899999998765444788999999999999999
Q ss_pred HHHHHHHHHhhccCCCC----ChhhHH-HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000937 720 IEESLFFSAWLRLAPQI----NSKTKA-DCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMD 794 (1218)
Q Consensus 720 v~e~l~~~~~~~~~~~~----~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllD 794 (1218)
|+|+|.|+++++.+... .+.++. +..+.+++.+||++++|+++|+..+|++||||||||++|.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 99999999999877432 222222 2577899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCCchhhhhhhhcCCCCC
Q 000937 795 EPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVP 873 (1218)
Q Consensus 795 EPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~ 873 (1218)
|+|+|||+.++.++++.||++++. +.|++++.|||+.+++++||++++|. +|+++|+||. +++.+||+.+ |.
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~-eG~~iy~Gp~----d~~~~yFe~~-Gf- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLS-EGYQIYQGPR----DEVLPYFEDM-GF- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeee-ccceEEeccH----HHHHHHHHhc-Cc-
Confidence 999999999999999999999875 89999999999999999999999998 5999999998 5789999998 55
Q ss_pred CCCCCCCCCcceeeecccchhhh------------hhhcHHHHHHhhHHHHHHHHHHHHhhcCCCCCCCCcccccccCch
Q 000937 874 QIRNNYNPATWMLEVTSASTEAE------------LGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNG 941 (1218)
Q Consensus 874 ~~~~~~npad~~l~~~~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1218)
.||++.++|||+.++++..++.+ ...++++.|.+|+.+++....++.........+.....++|..|.
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 69999999999999998432211 115788999999988877655443222222223334456789999
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHhHHHHHHHHHhHhhHhhhHhHHH
Q 000937 942 WGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAA 1021 (1218)
Q Consensus 942 ~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 1021 (1218)
|.|++.|++|.++.+.||..++..++++.+++|+++|++|++.+. ++..+.+.|.|++||++++..+.++.++ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999973 5567789999999999999998887775 4456
Q ss_pred HhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000937 1022 SERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVAL 1101 (1218)
Q Consensus 1022 ~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1101 (1218)
+.||||+|||...+|+++||.++.+++++|+.++.+++|.+|+||++||.+++++||.+++++++...|+++++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCcchHhHHHHhhCHHHHHHHHHHHHhhCCCccceee---------------
Q 000937 1102 SPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMV--------------- 1166 (1218)
Q Consensus 1102 ~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~y~sp~~y~~~~l~~~ef~~~~~~~~~--------------- 1166 (1218)
+++...|++++++.++.+.+++||+||.++||+||+|++|+||+.|++|+++.|||++++.+|..
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998877751
Q ss_pred ------cccc-ccHHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000937 1167 ------FIEN-KTIASFLEEYFGFHHDHLAVVAVALIVFPVVLASLFAFFVGRLNFQ 1216 (1218)
Q Consensus 1167 ------~~~~-~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1216 (1218)
+|+. +.+.+|+...|+|++.|.|+++||++||.++|.++..+++.|++..
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1111 4567788888999999999999999999999999999999999863
No 10
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-76 Score=729.39 Aligned_cols=753 Identities=20% Similarity=0.249 Sum_probs=434.1
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCccc---cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVP---QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~~---~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
|.|++||||||+.....+ ..+|+|++||.|+++.+. |..+|.|.|||++|.+ ||+||+.|.-
T Consensus 384 lVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~----------- 451 (1228)
T KOG0055|consen 384 LVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGK----------- 451 (1228)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCC-----------
Confidence 679999999999998887 578999999999998875 4567899999999975 9999999941
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
+. ..++|+++++|++|+|+|+.+++..+ ||.||+.+.. |||||||||+|||+++.+|
T Consensus 452 -------~d----at~~~i~~a~k~ana~~fi~~lp~g~-----------~T~vge~g~q-LSGGQKQRIAIARalv~~P 508 (1228)
T KOG0055|consen 452 -------PD----ATREEIEEAAKAANAHDFILKLPDGY-----------DTLVGERGVQ-LSGGQKQRIAIARALVRNP 508 (1228)
T ss_pred -------Cc----ccHHHHHHHHHHccHHHHHHhhHHhh-----------cccccCCCCC-CChHHHHHHHHHHHHHhCC
Confidence 11 12357899999999999999988776 9999985433 9999999999999999998
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCCC
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCGF 237 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG~ 237 (1218)
+||+|||||||||+.++..|+++|++.+ ++++|+|++ ||.++++.+|+|++|.+|++|+.|+|+|++.. -|.
T Consensus 509 -~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVa---HRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~---~G~ 580 (1228)
T KOG0055|consen 509 -KILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVA---HRLSTIRNADKIAVMEEGKIVEQGTHDELIAL---GGI 580 (1228)
T ss_pred -CEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEe---eehhhhhccCEEEEEECCEEEEecCHHHHHhc---cch
Confidence 8999999999999999999999999876 456677777 77889999999999999999999999999962 021
Q ss_pred CCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHH-HHhhhhcccccCccccccccccHHHHHHH
Q 000937 238 RCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDL-SQVYYKSESKKSSVSFAVFSLSRWELFKA 316 (1218)
Q Consensus 238 ~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~q~~~ 316 (1218)
..+....++..+. .+ +.+......+......+.+.......... .......+.+ .+..... . .......
T Consensus 581 ----Y~~lv~~Q~~~~~-~~-~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~-~e~~~~~--~-~~~~~~~ 650 (1228)
T KOG0055|consen 581 ----YSSLVRLQELEKA-AE-DEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPE-GEDPEEP--V-SEEDEKV 650 (1228)
T ss_pred ----HHHHHHHHhhhhh-hh-ccccccchhhhhhhccccccccccccCCcccccccccccc-ccccccc--c-ccccccc
Confidence 0000000000000 00 00000000000000000000000000000 0000000000 0000000 0 0000222
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccC--------CCccchhhh-hhhHHHHHHHHHH----------H
Q 000937 317 CMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTG--------MEVDVFHAN-YFMGSLFYTLVIL----------I 377 (1218)
Q Consensus 317 l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~--------~~~~~~~~~-~~~g~~f~~i~~~----------~ 377 (1218)
-++|.++..+.+|.++++..+.+++.|...+.+-+... .+.+..... ....++|..+... +
T Consensus 651 s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~ 730 (1228)
T KOG0055|consen 651 SFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYF 730 (1228)
T ss_pred cHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888999988888877776666544322110 111111111 1122222222111 1
Q ss_pred Hhhhcchhhhhhccc-----------eeeecccCCCcchHHHHHHH------HHHHhhHHHHHHhHhhheeeccccccch
Q 000937 378 VDGISEIPMSLERLA-----------VFYKQKEMCLYPAWAYVIPA------TILKVPLSLVESLVWTSLTYYVIGFSPE 440 (1218)
Q Consensus 378 ~~~~~~~~~~~~~r~-----------v~~re~~~~~y~~~~y~la~------~l~~~p~~~~~~~i~~~i~Y~~~gl~~~ 440 (1218)
|.-+++-.....|.. -|..++.. ...+.-+++ .+++-++..+...+.++++-..++|..+
T Consensus 731 f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns---g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~ 807 (1228)
T KOG0055|consen 731 FGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS---GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYG 807 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc---hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111001111 12222222 333332222 2333344444444444444434333322
Q ss_pred HhhHHH--HHHHHHHHHHhhhHHHHHHhcccchhhhhh---HhhhhhhhHHHHHHhhhcc-ceecCCc---chhh---hh
Q 000937 441 LWRWVS--FEKAFVYFCIESSVDHCAETLKIDQFMCFQ---LEVLQYGSSYYLVASLSHN-VRLSSNN---MIVY---FK 508 (1218)
Q Consensus 441 ~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~l~~G-~~i~~~~---~~~~---~~ 508 (1218)
+ +... .....++.........+......+...... .+|.-.....-.+..+... .++.... -.++ +.
T Consensus 808 W-~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~ 886 (1228)
T KOG0055|consen 808 W-RLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFK 886 (1228)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1100 000111111111111111111111110000 0010000001111111100 0000000 0000 00
Q ss_pred hcccccccC-----------C-CcccHHHhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccc
Q 000937 509 LIHWKKILF-----------T-NTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISH 576 (1218)
Q Consensus 509 ~~~~~~~~~-----------~-~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~~~~~l~~~~~~~~~~~~~~~ 576 (1218)
...|.+... . +..+|..++....++..+.+.......+.++.+..... -.|+..++..+.
T Consensus 887 ~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s--------~~Pd~~ka~~Aa 958 (1228)
T KOG0055|consen 887 RGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASS--------YAPDISKAKIAA 958 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHh--------hCcHHHHHHHHH
Confidence 000100000 0 11245555555444443322222111112222222211 125555555555
Q ss_pred CCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCC
Q 000937 577 GKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPG 656 (1218)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G 656 (1218)
..++...++++..+... ..+...+...-.++++|++|.||.+ ...+||+|+|+++++|
T Consensus 959 ~~iF~i~dr~~~i~~~~-----------~~~~~~~~~~G~I~~~~V~F~YPsR-----------P~~~Il~~l~l~i~~G 1016 (1228)
T KOG0055|consen 959 GSIFEILDRKPTIDPDS-----------TSGGKLPNVKGDIEFRNVSFAYPTR-----------PDVPVLNNLSLSIRAG 1016 (1228)
T ss_pred HHHHHHhcCCCCCCCCC-----------CCCCccccceeEEEEeeeEeeCCCC-----------CCchhhcCCcEEecCC
Confidence 55555555443222210 1111122234579999999999864 3468999999999999
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccC
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA 733 (1218)
Q Consensus 657 e~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~ 733 (1218)
+.+||+|||||||||.+.+|-..++| .+|.|.+||.++.+ ...|+++|.|.|+|.+|. -|++||+.|+. .
T Consensus 1017 qTvALVG~SGsGKSTvI~LLeRfYdp--~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-~--- 1089 (1228)
T KOG0055|consen 1017 QTVALVGPSGSGKSTVISLLERFYDP--DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-E--- 1089 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-C---
Confidence 99999999999999999999998887 48999999998654 346788999999999985 69999999971 1
Q ss_pred CCCChhhHHHHH---HHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 000937 734 PQINSKTKADCV---NHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR 810 (1218)
Q Consensus 734 ~~~~~~~~~~~~---~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~ 810 (1218)
..+.++..+.. +.---..+|.+-.||.+|..+. +||||||||++||||+++||+||||||.||+||+++.+.+.+
T Consensus 1090 -~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQe 1167 (1228)
T KOG0055|consen 1090 -EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQE 1167 (1228)
T ss_pred -CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHH
Confidence 12222222211 1111134788889999998875 799999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 811 AVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 811 ~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
.|.+.. .|+|.|++.|+++ ..+.+|.++|++ +|++++.|+-+
T Consensus 1168 ALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~-~G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1168 ALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLK-NGKVVEQGTHD 1209 (1228)
T ss_pred HHHHhh-cCCcEEEEecchh--hhhcCCEEEEEE-CCEEEecccHH
Confidence 999964 5899999999985 488999999998 69999999864
No 11
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-73 Score=698.71 Aligned_cols=512 Identities=27% Similarity=0.437 Sum_probs=409.5
Q ss_pred CCCCCCCCcchhhcccce------eEEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTG------LVTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g------~~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|.+|||||||.....| .++|+|++||++.....+++.+|||+|||.++|+|||||||.|+|++|.+.
T Consensus 61 imG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~----- 135 (613)
T KOG0061|consen 61 IMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPS----- 135 (613)
T ss_pred EECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCC-----
Confidence 579999999998766655 478999999988887788999999999999999999999999999998543
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
++++++++ .+||+++++|||.+|+||+||+...||||||||||||||+|++.+|
T Consensus 136 --~~~~~~k~------------------------~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P 189 (613)
T KOG0061|consen 136 --SLSKEEKR------------------------ERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDP 189 (613)
T ss_pred --CCCHHHHH------------------------HHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCC
Confidence 33444443 3589999999999999999999988999999999999999999998
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCCC
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCGF 237 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG~ 237 (1218)
+||+||||||||||.+|.++++.||++|++ |+|||+||||||+++|++||++++|++|+++|+|+++++.+||++.|+
T Consensus 190 -~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~ 267 (613)
T KOG0061|consen 190 -SILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGF 267 (613)
T ss_pred -CEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCC
Confidence 699999999999999999999999999986 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCChhhhhhhhhcCCC-CCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCcccccc-ccccHHHHHH
Q 000937 238 RCPDRKAVISRKDQAQYWFHNEL-PHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAV-FSLSRWELFK 315 (1218)
Q Consensus 238 ~~p~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~q~~ 315 (1218)
+||++.|...---......+... ...........+.++......+........... ....+. ...++|.|+.
T Consensus 268 ~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~q~~ 341 (613)
T KOG0061|consen 268 PCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLST------SKKVEIGTSPSWWTQFK 341 (613)
T ss_pred CCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhccc------ccccccccCCcHHHHHH
Confidence 99999982110000000000000 000000001111111000000000000000000 000111 1678999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhc-chhhhhhcccee
Q 000937 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGIS-EIPMSLERLAVF 394 (1218)
Q Consensus 316 ~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~-~~~~~~~~r~v~ 394 (1218)
.+++|.++..+|++.++..+.++.+++|+++|.+|++.+.+ .....++.+++|+.+.+..+..+. .++.+..+|++|
T Consensus 342 ~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~--~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f 419 (613)
T KOG0061|consen 342 ILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND--AKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIF 419 (613)
T ss_pred HHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999987543 334458889999999888666655 688899999999
Q ss_pred eecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHh---hhHHHHHHhcccch
Q 000937 395 YKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIE---SSVDHCAETLKIDQ 471 (1218)
Q Consensus 395 ~re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 471 (1218)
.||+..++|+.++|++|+.++++|+.++.+++|++|+|||+|++++..+|+. +.++.++.. .+++.++++..++.
T Consensus 420 ~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~--~~l~~~~~~~~a~s~~~~i~~~~~~~ 497 (613)
T KOG0061|consen 420 LRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLY--FLLIILLSSLVAESLGLFISAIVPNL 497 (613)
T ss_pred HHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHH--HHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999999999999999999999999999999988 555555433 78899999999998
Q ss_pred hhhhhHhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccc-----------------cC------C-CcccHHHhh
Q 000937 472 FMCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKI-----------------LF------T-NTTIGREIL 527 (1218)
Q Consensus 472 ~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~-----------------~~------~-~~~~G~~~l 527 (1218)
. .|..+++.....+++++||+++.+.+|+|+.|..|-.. .. . +...|.+++
T Consensus 498 ~-----~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l 572 (613)
T KOG0061|consen 498 S-----LATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVL 572 (613)
T ss_pred h-----heeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHH
Confidence 8 99999999999999999999999999998544332211 00 1 234678888
Q ss_pred hccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhccC
Q 000937 528 KSRGLNFDEYFFWISLGALFGLALVFNFAFALALSFLK 565 (1218)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~i~f~~~~~~~l~~~~ 565 (1218)
+..++...+ +|.++.+++++.++|++++++++++..
T Consensus 573 ~~~~~~~~~--~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 573 KQLGFEDSS--FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred HhcCCcccc--cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888876554 789999999999999999999998754
No 12
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.6e-68 Score=660.32 Aligned_cols=517 Identities=26% Similarity=0.389 Sum_probs=417.2
Q ss_pred CCCCCCCCcchhhccccee------EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL------VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~------~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.+.+....++.++||+|+|.|++++||+|||.|+++++.+.
T Consensus 56 I~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~----- 130 (617)
T TIGR00955 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPR----- 130 (617)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCC-----
Confidence 6799999999999888874 37999999999876566778999999999999999999999999987532
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCc-CCcCCccccchhhHHHHHhhC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAI-RRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~-~rGLSGGeKrRvSIA~ell~~ 156 (1218)
..+++++ ...++++++.|||.+++||.||++. .|||||||||||+||+|++.+
T Consensus 131 --~~~~~~~------------------------~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~ 184 (617)
T TIGR00955 131 --RVTKKEK------------------------RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTD 184 (617)
T ss_pred --CCCHHHH------------------------HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcC
Confidence 1122222 1246889999999999999999864 689999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCC
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCG 236 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG 236 (1218)
| +||+|||||||||+.++.++++.|+++++ .|+|+|+++|||+.+++++||++++|++|+++|+||++++.+||+++|
T Consensus 185 p-~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g 262 (617)
T TIGR00955 185 P-PLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLG 262 (617)
T ss_pred C-CEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcC
Confidence 8 79999999999999999999999999986 589999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhccc---ccCccccccccccHHHH
Q 000937 237 FRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSES---KKSSVSFAVFSLSRWEL 313 (1218)
Q Consensus 237 ~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~q 313 (1218)
++||++.|..+--..................+++.+.|++++..++..++.......+.. .........+..+++.|
T Consensus 263 ~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 342 (617)
T TIGR00955 263 HPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQ 342 (617)
T ss_pred CCCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHH
Confidence 999999872211000000000000001122345556666655444433322211111000 00001123456789999
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhh-cchhhhhhccc
Q 000937 314 FKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGI-SEIPMSLERLA 392 (1218)
Q Consensus 314 ~~~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~-~~~~~~~~~r~ 392 (1218)
+..+++|.++..+||+..+..++++.+++|+++|++|++.+.+ ..+.+.+.|++|++++.+.+..+ ..++.+..+|+
T Consensus 343 ~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~--~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~ 420 (617)
T TIGR00955 343 FYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT--QKGVQNINGALFLFLTNMTFQNVFPVINVFTAELP 420 (617)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999976643 44667788999999888777764 45666778999
Q ss_pred eeeecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHh---hhHHHHHHhccc
Q 000937 393 VFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIE---SSVDHCAETLKI 469 (1218)
Q Consensus 393 v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~---~~~~~~~~~~~~ 469 (1218)
+|+||+..++|++++|+++++++++|+.++.+++|.+|+|||+|+++++.+|+. +++++++.. .+++.+++++++
T Consensus 421 v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~--f~l~~~l~~~~~~s~~~~i~~~~~ 498 (617)
T TIGR00955 421 VFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLT--FLFLVTLVANVATSFGYLISCAFS 498 (617)
T ss_pred HHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999987 555554443 788999999999
Q ss_pred chhhhhhHhhhhhhhHHHHHHhhhccceecCCcchhhhhhccccccc----------------C-C---------CcccH
Q 000937 470 DQFMCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKIL----------------F-T---------NTTIG 523 (1218)
Q Consensus 470 ~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~----------------~-~---------~~~~G 523 (1218)
+.. .|..+++...+++++++||+++.+++|.|+.|..|..+. . . +...|
T Consensus 499 ~~~-----~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g 573 (617)
T TIGR00955 499 STS-----MALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSG 573 (617)
T ss_pred chH-----HHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcCh
Confidence 999 999999999999999999999999999987776665531 0 0 11248
Q ss_pred HHhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 000937 524 REILKSRGLNFDEYFFWISLGALFGLALVFNFAFALALSFL 564 (1218)
Q Consensus 524 ~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~~~~~l~~~ 564 (1218)
+++++.+|++.++ +|.++++++++.++|+++++++|++.
T Consensus 574 ~~~l~~~g~~~~~--~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 574 EVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred HHHHHhcCCCccc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999987654 69999999999999999999999864
No 13
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.5e-65 Score=635.01 Aligned_cols=508 Identities=20% Similarity=0.316 Sum_probs=394.6
Q ss_pred CCCCCCCCcchhhccccee-----EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL-----VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~-----~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|++||.+..+. .++.++||+|+|.+++.+||+|||.|++.++.+.
T Consensus 99 I~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~------ 171 (659)
T PLN03211 99 VLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPK------ 171 (659)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCC------
Confidence 6799999999999999985 389999999987643 2345899999999999999999999998776321
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
..+++++ ...++++++.+||++++||+||+...++|||||||||+||++++.+|
T Consensus 172 -~~~~~~~------------------------~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P- 225 (659)
T PLN03211 172 -SLTKQEK------------------------ILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP- 225 (659)
T ss_pred -CCCHHHH------------------------HHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCC-
Confidence 1111111 12357889999999999999999888999999999999999999988
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCCCC
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFR 238 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG~~ 238 (1218)
+||+|||||||||+.++.++++.|+++++ .|+|||+++|||+.+++++||+|++|++|+++|+|+++++.+||+++|++
T Consensus 226 ~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~ 304 (659)
T PLN03211 226 SLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFS 304 (659)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCC
Confidence 79999999999999999999999999986 58999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-------cCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHh--hh-hcc------cccCccc
Q 000937 239 CPDRKA-------VISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQV--YY-KSE------SKKSSVS 302 (1218)
Q Consensus 239 ~p~~~~-------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~-~~~------~~~~~~~ 302 (1218)
||++.| +.+.....+ ...........+.+.+.|++.. .++.....+.. .. ..+ .......
T Consensus 305 ~P~~~NpADf~ldv~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (659)
T PLN03211 305 PSFPMNPADFLLDLANGVCQTD---GVSEREKPNVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSS 380 (659)
T ss_pred CCCCCCHHHHHHHHcCccccCC---CccccccchHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccC
Confidence 999988 122111000 0000000111233444454221 11111111100 00 000 0000001
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHH-hhh
Q 000937 303 FAVFSLSRWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIV-DGI 381 (1218)
Q Consensus 303 ~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~-~~~ 381 (1218)
...+..++|+|+.+|++|.++. +|++.....++++.+++|+++|++||+.+ ..+.+++.|++||++.+..+ ..+
T Consensus 381 ~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~----~~~~~~r~g~lff~~~~~~~~~~~ 455 (659)
T PLN03211 381 DRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD----FRDVQDRLGLLFFISIFWGVFPSF 455 (659)
T ss_pred CCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124468999999999999988 78888888999999999999999999763 23567889999999877554 556
Q ss_pred cchhhhhhccceeeecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHh---h
Q 000937 382 SEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIE---S 458 (1218)
Q Consensus 382 ~~~~~~~~~r~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~---~ 458 (1218)
..++.+..+|++|+||+.+++|++++|++|++++++|+.++.+++|++|+|||+||++++.+|+. |++++++.. +
T Consensus 456 ~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~--f~li~~l~~~~~~ 533 (659)
T PLN03211 456 NSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLL--TLLVLLGYVLVSQ 533 (659)
T ss_pred HHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHH--HHHHHHHHHHHHH
Confidence 77888889999999999999999999999999999999999999999999999999999999988 666665544 8
Q ss_pred hHHHHHHhcccchhhhhhHhhhhhhhHHHHHHhhhccceecCCcchhhhhhccccccc-----------CCC--------
Q 000937 459 SVDHCAETLKIDQFMCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKIL-----------FTN-------- 519 (1218)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~-----------~~~-------- 519 (1218)
+++.++++++++.. .|+.+++..++++++|+||+++ ++|.|+.|..|..+. .+.
T Consensus 534 s~g~~i~a~~~~~~-----~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~ 606 (659)
T PLN03211 534 GLGLALGAAIMDAK-----KASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLL 606 (659)
T ss_pred HHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCcccccccc
Confidence 89999999999999 9999999999999999999996 799998777665532 000
Q ss_pred cccH--------HHhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhccC
Q 000937 520 TTIG--------REILKSRGLNFDEYFFWISLGALFGLALVFNFAFALALSFLK 565 (1218)
Q Consensus 520 ~~~G--------~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~~~~~l~~~~ 565 (1218)
.|.+ ..++....+. ....|.++++++++.++|+++++++|++.+
T Consensus 607 ~C~~~~~~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 607 GCSLPHGSDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred CCCCcccCCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111 0112212222 234788999999999999999999998654
No 14
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=5.8e-62 Score=641.07 Aligned_cols=217 Identities=25% Similarity=0.431 Sum_probs=189.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. +++.+|+|+|+.|++||++||+||||||||||+|+|+|..+|. +|+|.++|++
T Consensus 1937 ~L~v~nLsK~Y~~------------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt--sG~I~i~G~~ 2002 (2272)
T TIGR01257 1937 ILRLNELTKVYSG------------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT--SGDATVAGKS 2002 (2272)
T ss_pred eEEEEEEEEEECC------------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC--ccEEEECCEE
Confidence 4889999988841 1257999999999999999999999999999999999998874 8999999998
Q ss_pred Ccc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 696 KIQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
+.. ...++.+||++|++.+++.+||+|++.+.+.++. ...++.++.++++++.++|.+..|+.++ +||||
T Consensus 2003 i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGG 2074 (2272)
T TIGR01257 2003 ILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGG 2074 (2272)
T ss_pred CcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHH
Confidence 642 2345679999999999999999999998776542 2233445678889999999988887754 79999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||||+||+||+.+|++++|||||+|||+.+++.+++.|++++++|+|||++||+++ ++...||++++|. +|+++..|
T Consensus 2075 qKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~-~G~i~~~G 2152 (2272)
T TIGR01257 2075 NKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMV-KGAFQCLG 2152 (2272)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEC
Confidence 999999999999999999999999999999999999999999888999999999985 6778899999998 59999999
Q ss_pred CCC
Q 000937 854 PLG 856 (1218)
Q Consensus 854 ~~~ 856 (1218)
++.
T Consensus 2153 s~q 2155 (2272)
T TIGR01257 2153 TIQ 2155 (2272)
T ss_pred CHH
Confidence 873
No 15
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.4e-62 Score=645.16 Aligned_cols=217 Identities=20% Similarity=0.331 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC------------
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG------------ 683 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~------------ 683 (1218)
.++|+||+|+|+.. +++++|+|+|++|+||+.+||+||||||||||+++|.|+++|.
T Consensus 1165 ~I~f~nVsF~Y~~~-----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR-----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred eEEEEEEEEECCCC-----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 58999999999631 1246999999999999999999999999999999999988761
Q ss_pred ----------------------------------------ceeeEEEECCEeCcc---ccccceEEEeccCCCCCCCCCH
Q 000937 684 ----------------------------------------CFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHITI 720 (1218)
Q Consensus 684 ----------------------------------------~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv 720 (1218)
+.+|+|++||.++.. ..+++.++||+|++.+| +.|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccH
Confidence 148999999998643 45678899999999887 4899
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000937 721 EESLFFSAWLRLAPQINSKTKADCVNHVLKTIE-------LDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFM 793 (1218)
Q Consensus 721 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llll 793 (1218)
+|||.++. ++.+. +.++++++..+ |.+-.|+.+|..+ ..||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~-----~~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK-----EDATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99998852 12222 23444444443 4456788998665 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCCHHHHHhhceEEEEecC---CEE-EEEcCCC
Q 000937 794 DEPTTGLDARAAAIVMRAVKNVA-DTGRTIVCTIHQPSIDIFESFDELILLKTG---GRI-IYSGPLG 856 (1218)
Q Consensus 794 DEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~---G~~-~~~g~~~ 856 (1218)
|||||+||+.+++.|.+.|+++. .+++|+|+++|++ +..+.+|++++|.++ |++ ++.|+.+
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~ 1448 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHE 1448 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHH
Confidence 99999999999999999999986 3689999999987 457889999999852 775 4789864
No 16
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1e-57 Score=528.66 Aligned_cols=450 Identities=24% Similarity=0.310 Sum_probs=340.4
Q ss_pred CCCCCCCCcchhhccccee-------EEEEEEECCcccCCcccc-------ceEEeecccc--ccCCCCCHHHHHHHHhh
Q 000937 4 LNDRIGFGLSVISWFCTGL-------VTGEVSYNGYKLEEFVPQ-------KLSAYVSQYD--LHIPEMTVRETLDFSTY 67 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~-------~~G~V~~nG~~~~~~~~~-------~~~~yV~Q~D--~l~~~LTVrEtL~Faa~ 67 (1218)
+.|.+||||||++....|. .+|+|.+||.++.....+ +.++||+|++ .+-|..||.+.+.=+.+
T Consensus 40 IvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~ 119 (539)
T COG1123 40 IVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALR 119 (539)
T ss_pred EEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHH
Confidence 5689999999999988872 479999999977655421 4678999996 66788999999988777
Q ss_pred ccCCCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchh
Q 000937 68 CQGVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRL 147 (1218)
Q Consensus 68 lk~~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRv 147 (1218)
.+... ++++.+ ....++++..||++-... +.+.+.|||||||||
T Consensus 120 ~h~~~---------~~~ea~------------------------~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv 163 (539)
T COG1123 120 LHGKG---------SRAEAR------------------------KRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRV 163 (539)
T ss_pred Hhccc---------cHHHHH------------------------HHHHHHHHHcCCCChhhh---ccCCcccCchHHHHH
Confidence 65422 112211 124677999999997776 667899999999999
Q ss_pred hHHHHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhh
Q 000937 148 TTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRES 227 (1218)
Q Consensus 148 SIA~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~ 227 (1218)
.||+++.++| ++|++||||++||..+..+|++.||++.++.|+++|++-|-+ .-+-+++|+|+||.+|++|+.|++++
T Consensus 164 ~iAmALa~~P-~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G~~~~ 241 (539)
T COG1123 164 MIAMALALKP-KLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETGPTEE 241 (539)
T ss_pred HHHHHHhCCC-CEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEecCHHH
Confidence 9999999998 899999999999999999999999999999999988875532 34467799999999999999999998
Q ss_pred HHHHHHhCCCCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCcccccccc
Q 000937 228 VLEFFESCGFRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFS 307 (1218)
Q Consensus 228 l~~yF~~lG~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (1218)
+.+- |.| + |.+ .....
T Consensus 242 i~~~--------p~h------------------p------------YT~-----~Ll~a--------------------- 257 (539)
T COG1123 242 ILSN--------PQH------------------P------------YTR-----GLLAA--------------------- 257 (539)
T ss_pred HHhc--------cCC------------------c------------ccH-----HHHhh---------------------
Confidence 8851 110 0 000 00000
Q ss_pred ccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhh
Q 000937 308 LSRWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMS 387 (1218)
Q Consensus 308 ~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~ 387 (1218)
+
T Consensus 258 ----------------------------------------------------------------------------~--- 258 (539)
T COG1123 258 ----------------------------------------------------------------------------V--- 258 (539)
T ss_pred ----------------------------------------------------------------------------C---
Confidence 0
Q ss_pred hhccceeeecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHhhhHHHHHHhc
Q 000937 388 LERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETL 467 (1218)
Q Consensus 388 ~~~r~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 467 (1218)
T Consensus 259 -------------------------------------------------------------------------------- 258 (539)
T COG1123 259 -------------------------------------------------------------------------------- 258 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhHhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccccCCCcccHHHhhhccCcccCCcchhHHHHHHH
Q 000937 468 KIDQFMCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALF 547 (1218)
Q Consensus 468 ~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~ 547 (1218)
|... .
T Consensus 259 -p~~~-----------------------------~--------------------------------------------- 263 (539)
T COG1123 259 -PRLG-----------------------------D--------------------------------------------- 263 (539)
T ss_pred -CCcc-----------------------------c---------------------------------------------
Confidence 0000 0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCcccccCCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEe
Q 000937 548 GLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSID 627 (1218)
Q Consensus 548 ~~~i~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 627 (1218)
. ... . .. .... . . ...-++.+||+..+.
T Consensus 264 -------------------~---~~~-------~--~~--~~~~--~-----~------------~~~ll~V~~l~k~y~ 291 (539)
T COG1123 264 -------------------E---KII-------R--LP--RRGP--L-----R------------AEPLLSVRNLSKRYG 291 (539)
T ss_pred -------------------c---ccc-------c--cc--cccc--c-----c------------cCceeEeeeeeeeec
Confidence 0 000 0 00 0000 0 0 112367778877776
Q ss_pred cCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC--cc---cccc
Q 000937 628 TPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK--IQ---ETFV 702 (1218)
Q Consensus 628 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~--~~---~~~~ 702 (1218)
.+..+. . ...+...+++||||++++||++||+|+||||||||.|+|+|+.+| .+|+|.++|.+. .. ...+
T Consensus 292 ~~~~~~-~--~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r 366 (539)
T COG1123 292 SRKGLF-V--RERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLR 366 (539)
T ss_pred cccccc-c--ccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhh
Confidence 432111 0 012346799999999999999999999999999999999999887 489999999772 11 1234
Q ss_pred ceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHH
Q 000937 703 RVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGLSTEQRKRLT 779 (1218)
Q Consensus 703 ~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGerqRv~ 779 (1218)
+.+-+++|++ .+.|.+||++++......... ....++++++.++++..+|.. ..++. +.+||||||||++
T Consensus 367 ~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRva 439 (539)
T COG1123 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVA 439 (539)
T ss_pred hheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHH
Confidence 4566667765 678999999999876554322 224556678999999999984 34443 4689999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 780 IGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 780 ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
|||||+.+|++|++|||||.||+..+.+++++|+++.++ |.|.|++|||++ -+...||++++|. +|+++..||.
T Consensus 440 IARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~-~G~iVE~G~~ 514 (539)
T COG1123 440 IARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMY-DGRIVEEGPT 514 (539)
T ss_pred HHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEE-CCeEEEeCCH
Confidence 999999999999999999999999999999999999876 999999999985 4667899999998 6999999975
No 17
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-57 Score=611.16 Aligned_cols=213 Identities=20% Similarity=0.291 Sum_probs=178.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++|+|++++|+. +.+++|+|+|++|+|||.+||+|+||||||||+++|.|+.+|. +|+|.+||.
T Consensus 1236 g~I~f~nVsf~Y~~------------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~--~G~I~IDG~ 1301 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP------------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE--RGRILIDGC 1301 (1622)
T ss_pred CcEEEEEEEEEeCC------------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC--CceEEECCE
Confidence 36899999999942 1236999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 764 (1218)
++.. ...|+.+++|||++.+|.. |++|||.+.. ..+ ++.+.++++..++. +-.|+.+|.
T Consensus 1302 dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge 1370 (1622)
T PLN03130 1302 DISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSE 1370 (1622)
T ss_pred ecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccC
Confidence 8653 4567889999999998875 9999996531 111 23345555555443 345777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++ ....+|++++|+
T Consensus 1371 ~G-~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd 1446 (1622)
T PLN03130 1371 AG-ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLD 1446 (1622)
T ss_pred CC-CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEE
Confidence 54 4799999999999999999999999999999999999999999999874 4899999999875 467799999998
Q ss_pred cCCEEEEEcCCCC
Q 000937 845 TGGRIIYSGPLGN 857 (1218)
Q Consensus 845 ~~G~~~~~g~~~~ 857 (1218)
+|++++.|++++
T Consensus 1447 -~G~IvE~Gt~~e 1458 (1622)
T PLN03130 1447 -AGRVVEFDTPEN 1458 (1622)
T ss_pred -CCEEEEeCCHHH
Confidence 599999999864
No 18
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-56 Score=548.79 Aligned_cols=438 Identities=19% Similarity=0.287 Sum_probs=328.6
Q ss_pred CCCCCCCCcchhhccccee-----EEEEEEECCcccCCccc----cceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL-----VTGEVSYNGYKLEEFVP----QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~-----~~G~V~~nG~~~~~~~~----~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|++||.++..... ++.++||+|++.+++.+||+|++.|....+..+.
T Consensus 36 l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~- 114 (506)
T PRK13549 36 LCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGI- 114 (506)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCC-
Confidence 6799999999999999984 37999999998865331 3458999999999999999999998754321000
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
...++. ...++++++.+||.+..|..++ .|||||||||+|||+++
T Consensus 115 ------~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqrv~la~al~ 159 (506)
T PRK13549 115 ------MDYDAM------------------------YLRAQKLLAQLKLDINPATPVG-----NLGLGQQQLVEIAKALN 159 (506)
T ss_pred ------cCHHHH------------------------HHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHHHHHHHHh
Confidence 000000 1125678999999888887764 59999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHh
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFES 234 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~ 234 (1218)
.+| +||+|||||+|||+.+...+++.|+++++ .|+|+|++-|++ .++...+|+|++|.+|++++.|+.+++..
T Consensus 160 ~~p-~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~~---- 232 (506)
T PRK13549 160 KQA-RLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGMTE---- 232 (506)
T ss_pred cCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccCCH----
Confidence 887 89999999999999999999999999975 578888887754 46667899999999999999886432110
Q ss_pred CCCCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCccccccccccHHHHH
Q 000937 235 CGFRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELF 314 (1218)
Q Consensus 235 lG~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~ 314 (1218)
...
T Consensus 233 ---------------------------------~~~-------------------------------------------- 235 (506)
T PRK13549 233 ---------------------------------DDI-------------------------------------------- 235 (506)
T ss_pred ---------------------------------HHH--------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhhhhcccee
Q 000937 315 KACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSLERLAVF 394 (1218)
Q Consensus 315 ~~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~~~r~v~ 394 (1218)
..+ + . +.+..
T Consensus 236 ---~~~-~----------------------------~--~~~~~------------------------------------ 245 (506)
T PRK13549 236 ---ITM-M----------------------------V--GRELT------------------------------------ 245 (506)
T ss_pred ---HHH-h----------------------------h--CcCcc------------------------------------
Confidence 000 0 0 00000
Q ss_pred eecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHhhhHHHHHHhcccchhhh
Q 000937 395 YKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMC 474 (1218)
Q Consensus 395 ~re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1218)
. . .
T Consensus 246 ------------------------------------------------~--~-------------------------~-- 248 (506)
T PRK13549 246 ------------------------------------------------A--L-------------------------Y-- 248 (506)
T ss_pred ------------------------------------------------c--c-------------------------c--
Confidence 0 0 0
Q ss_pred hhHhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccccCCCcccHHHhhhccCcccCCcchhHHHHHHHHHHHHHH
Q 000937 475 FQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFN 554 (1218)
Q Consensus 475 ~~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~ 554 (1218)
T Consensus 249 -------------------------------------------------------------------------------- 248 (506)
T PRK13549 249 -------------------------------------------------------------------------------- 248 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhccCCCCCCCcccccCCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhh
Q 000937 555 FAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRR 634 (1218)
Q Consensus 555 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 634 (1218)
+. ... + . ....++++|+++.++.
T Consensus 249 ------------~~--------------------~~~---~---------~-------~~~~l~~~~l~~~~~~------ 271 (506)
T PRK13549 249 ------------PR--------------------EPH---T---------I-------GEVILEVRNLTAWDPV------ 271 (506)
T ss_pred ------------cc--------------------ccc---C---------C-------CCceEEEecCcccccc------
Confidence 00 000 0 0 0012567777765521
Q ss_pred hccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc----cccceEEEecc
Q 000937 635 RECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE----TFVRVSGYCEQ 710 (1218)
Q Consensus 635 ~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q 710 (1218)
.+++.+|+|+|+++++||+++|+||||||||||+|+|+|..+|. .+|+|.++|+++... ..++.++|++|
T Consensus 272 -----~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 345 (506)
T PRK13549 272 -----NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR-WEGEIFIDGKPVKIRNPQQAIAQGIAMVPE 345 (506)
T ss_pred -----ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCC-CCcEEEECCEECCCCCHHHHHHCCCEEeCc
Confidence 01246899999999999999999999999999999999987631 389999999875321 12456899999
Q ss_pred CC---CCCCCCCHHHHHHHHHhhccCC--CCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000937 711 TD---IHSPHITIEESLFFSAWLRLAP--QINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGVEL 784 (1218)
Q Consensus 711 ~~---~~~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L 784 (1218)
+. .+++.+||.||+.+........ ........++++++++.+++. +..++.+ .+|||||||||+||++|
T Consensus 346 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al 420 (506)
T PRK13549 346 DRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCL 420 (506)
T ss_pred chhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHH
Confidence 85 4778899999998753211110 012223345688899999996 4566664 47999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCC
Q 000937 785 VANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNH 858 (1218)
Q Consensus 785 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 858 (1218)
+.+|++|+|||||+|||+.++..+.++|++++++|+|||++||+++ ++.+.||++++|. +|+++..|++++.
T Consensus 421 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~-~G~i~~~~~~~~~ 492 (506)
T PRK13549 421 LLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMH-EGKLKGDLINHNL 492 (506)
T ss_pred hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEeccccC
Confidence 9999999999999999999999999999999888999999999985 6778899999997 5999999987653
No 19
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.8e-56 Score=600.83 Aligned_cols=212 Identities=18% Similarity=0.276 Sum_probs=177.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++|+|++++|+. +.+++|+|+|++|+|||.+||+||||||||||+++|.|+.+|. +|+|.+||.+
T Consensus 1234 ~I~f~nVsf~Y~~------------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~--~G~I~IdG~d 1299 (1495)
T PLN03232 1234 SIKFEDVHLRYRP------------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE--KGRIMIDDCD 1299 (1495)
T ss_pred cEEEEEEEEEECC------------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CceEEECCEE
Confidence 5899999999942 1246999999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 765 (1218)
+.+ ..+|+.++||||++.+++. |++|||.+. ...+ ++.+.++++..++. +-.|+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~------~~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPF------SEHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCC------CCCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 643 4567889999999998874 999999642 1112 23355566655553 3356777765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+ ..||||||||++|||||+++|+||+||||||+||+++.+.|.+.|++.. +++|+|+++|+++ ....+|++++|+
T Consensus 1369 G-~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~- 1443 (1495)
T PLN03232 1369 G-ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLS- 1443 (1495)
T ss_pred C-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEE-
Confidence 4 5799999999999999999999999999999999999999999999864 4899999999874 467799999998
Q ss_pred CCEEEEEcCCCC
Q 000937 846 GGRIIYSGPLGN 857 (1218)
Q Consensus 846 ~G~~~~~g~~~~ 857 (1218)
+|++++.|++++
T Consensus 1444 ~G~ivE~Gt~~e 1455 (1495)
T PLN03232 1444 SGQVLEYDSPQE 1455 (1495)
T ss_pred CCEEEEECCHHH
Confidence 599999998743
No 20
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-56 Score=545.53 Aligned_cols=437 Identities=19% Similarity=0.265 Sum_probs=325.0
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV----PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~----~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.... .++.++||+|++.+++.+||+|++.++...... ...
T Consensus 36 liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~--~~~ 113 (510)
T PRK09700 36 LLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKK--VCG 113 (510)
T ss_pred EECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccc--ccc
Confidence 6799999999999999995 4899999999886532 124589999999999999999999885421000 000
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
.. ..+.++. ...++++++.+||.+..|..++ .|||||||||+||++++.+
T Consensus 114 ~~-~~~~~~~------------------------~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~ia~al~~~ 163 (510)
T PRK09700 114 VN-IIDWREM------------------------RVRAAMMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLD 163 (510)
T ss_pred cc-ccCHHHH------------------------HHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHHHHHHHHhcC
Confidence 00 0000000 1135678999999988888765 5999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCC
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCG 236 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG 236 (1218)
| +||+|||||+|||+.+...+++.|+++++ .|+|||++-|. ..++...+|++++|.+|++++.|+++++..
T Consensus 164 p-~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd-~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~------ 234 (510)
T PRK09700 164 A-KVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSGMVSDVSN------ 234 (510)
T ss_pred C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHhCCEEEEEECCEEeeecchhhCCH------
Confidence 7 89999999999999999999999999976 48888887664 446667899999999999999987653210
Q ss_pred CCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCccccccccccHHHHHHH
Q 000937 237 FRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFKA 316 (1218)
Q Consensus 237 ~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~ 316 (1218)
+ +..
T Consensus 235 -------------------------------~-----------------~~~---------------------------- 238 (510)
T PRK09700 235 -------------------------------D-----------------DIV---------------------------- 238 (510)
T ss_pred -------------------------------H-----------------HHH----------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhhhhccceeee
Q 000937 317 CMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSLERLAVFYK 396 (1218)
Q Consensus 317 l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~~~r~v~~r 396 (1218)
.+ .. +....
T Consensus 239 --~~-----------------------------~~--~~~~~-------------------------------------- 247 (510)
T PRK09700 239 --RL-----------------------------MV--GRELQ-------------------------------------- 247 (510)
T ss_pred --HH-----------------------------hc--CCCcc--------------------------------------
Confidence 00 00 00000
Q ss_pred cccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHhhhHHHHHHhcccchhhhhh
Q 000937 397 QKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCFQ 476 (1218)
Q Consensus 397 e~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1218)
. . ..
T Consensus 248 ------------------------------------------~---~---------------------------~~---- 251 (510)
T PRK09700 248 ------------------------------------------N---R---------------------------FN---- 251 (510)
T ss_pred ------------------------------------------c---c---------------------------cc----
Confidence 0 0 00
Q ss_pred HhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccccCCCcccHHHhhhccCcccCCcchhHHHHHHHHHHHHHHHH
Q 000937 477 LEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNFA 556 (1218)
Q Consensus 477 ~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~ 556 (1218)
T Consensus 252 -------------------------------------------------------------------------------- 251 (510)
T PRK09700 252 -------------------------------------------------------------------------------- 251 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhccCCCCCCCcccccCCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhhc
Q 000937 557 FALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRE 636 (1218)
Q Consensus 557 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 636 (1218)
.. . ... . . .. .+..++++|+++.+
T Consensus 252 -----------~~-~-----------------~~~--~---~-----~~-------~~~~l~~~~l~~~~---------- 275 (510)
T PRK09700 252 -----------AM-K-----------------ENV--S---N-----LA-------HETVFEVRNVTSRD---------- 275 (510)
T ss_pred -----------cc-c-----------------ccc--c---c-----CC-------CCcEEEEeCccccC----------
Confidence 00 0 000 0 0 00 01136777777532
Q ss_pred cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc----cccceEEEeccC-
Q 000937 637 CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE----TFVRVSGYCEQT- 711 (1218)
Q Consensus 637 ~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~- 711 (1218)
..+|+|+|+++++||+++|+||||||||||+|+|+|..+| .+|+|.++|++.... ..++.++|++|+
T Consensus 276 ------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~ 347 (510)
T PRK09700 276 ------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESR 347 (510)
T ss_pred ------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCcc
Confidence 1379999999999999999999999999999999998876 489999999875321 234568999998
Q ss_pred --CCCCCCCCHHHHHHHHHhhc---cCC--C-CChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHH
Q 000937 712 --DIHSPHITIEESLFFSAWLR---LAP--Q-INSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGV 782 (1218)
Q Consensus 712 --~~~~~~lTv~e~l~~~~~~~---~~~--~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~ 782 (1218)
..+++.+||.||+.+....+ ... . ......++.++++++.+++. +..++.+ .+|||||||||+|||
T Consensus 348 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAr 422 (510)
T PRK09700 348 RDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISK 422 (510)
T ss_pred ccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHH
Confidence 45788999999998753211 000 0 01222335578899999996 6667665 479999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 783 ELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 783 ~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
+|+.+|++|||||||+|||+.++..+.++|++++++|+|||++|||++ ++.+.||++++|. +|+++..++.
T Consensus 423 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~-~G~i~~~~~~ 493 (510)
T PRK09700 423 WLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFC-EGRLTQILTN 493 (510)
T ss_pred HHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEE-CCEEEEEecC
Confidence 999999999999999999999999999999999888999999999985 5778899999997 5899988865
No 21
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.7e-56 Score=541.51 Aligned_cols=429 Identities=19% Similarity=0.297 Sum_probs=324.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV----PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~----~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|++||.++.... .++.++||+|++.+++.+||+|++.|+........
T Consensus 35 l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~--- 111 (501)
T PRK10762 35 LVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFG--- 111 (501)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccC---
Confidence 6799999999999999995 4799999999875322 13458999999999999999999998654321000
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
..+.++. ...++++++.+||.+..|..++ .|||||||||+||++++.+
T Consensus 112 ---~~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~ 159 (501)
T PRK10762 112 ---RIDWKKM------------------------YAEADKLLARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFE 159 (501)
T ss_pred ---ccCHHHH------------------------HHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHhcC
Confidence 0000000 1124678999999998887765 4999999999999999888
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCC
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCG 236 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG 236 (1218)
| ++|+|||||+|||+.+...+++.|+++++ .|+|+|++-|++ .++...+|+|++|.+|+++..|+.+++..
T Consensus 160 p-~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~------ 230 (501)
T PRK10762 160 S-KVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADLTE------ 230 (501)
T ss_pred C-CEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcCCH------
Confidence 7 89999999999999999999999999975 488888887754 46778899999999999998876432110
Q ss_pred CCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCccccccccccHHHHHHH
Q 000937 237 FRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFKA 316 (1218)
Q Consensus 237 ~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~ 316 (1218)
+.. .
T Consensus 231 -------------------------------~~~-----------------~---------------------------- 234 (501)
T PRK10762 231 -------------------------------DSL-----------------I---------------------------- 234 (501)
T ss_pred -------------------------------HHH-----------------H----------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhhhhccceeee
Q 000937 317 CMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSLERLAVFYK 396 (1218)
Q Consensus 317 l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~~~r~v~~r 396 (1218)
.+ ++ +...
T Consensus 235 --~~-----------------------------~~--~~~~--------------------------------------- 242 (501)
T PRK10762 235 --EM-----------------------------MV--GRKL--------------------------------------- 242 (501)
T ss_pred --HH-----------------------------hc--CCCc---------------------------------------
Confidence 00 00 0000
Q ss_pred cccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHhhhHHHHHHhcccchhhhhh
Q 000937 397 QKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCFQ 476 (1218)
Q Consensus 397 e~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1218)
. . .
T Consensus 243 -----------------------------------------~-------~-------------------------~---- 245 (501)
T PRK10762 243 -----------------------------------------E-------D-------------------------Q---- 245 (501)
T ss_pred -----------------------------------------c-------c-------------------------c----
Confidence 0 0 0
Q ss_pred HhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccccCCCcccHHHhhhccCcccCCcchhHHHHHHHHHHHHHHHH
Q 000937 477 LEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNFA 556 (1218)
Q Consensus 477 ~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~ 556 (1218)
T Consensus 246 -------------------------------------------------------------------------------- 245 (501)
T PRK10762 246 -------------------------------------------------------------------------------- 245 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhccCCCCCCCcccccCCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhhc
Q 000937 557 FALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRE 636 (1218)
Q Consensus 557 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 636 (1218)
.+. ... . + .+..++++|++.
T Consensus 246 ---------~~~--------------------~~~------------~------~-~~~~l~~~~l~~------------ 265 (501)
T PRK10762 246 ---------YPR--------------------LDK------------A------P-GEVRLKVDNLSG------------ 265 (501)
T ss_pred ---------ccc--------------------ccc------------C------C-CCcEEEEeCccc------------
Confidence 000 000 0 0 001255666541
Q ss_pred cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc----cccceEEEeccCC
Q 000937 637 CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE----TFVRVSGYCEQTD 712 (1218)
Q Consensus 637 ~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~ 712 (1218)
.+|+|+|+++++||+++|+||||||||||+|+|+|..+|. +|+|.++|+++... ..++.++|++|++
T Consensus 266 -------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~--~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~ 336 (501)
T PRK10762 266 -------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT--SGYVTLDGHEVVTRSPQDGLANGIVYISEDR 336 (501)
T ss_pred -------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECCCCCHHHHHHCCCEEecCcc
Confidence 2699999999999999999999999999999999998764 89999999875321 2345699999995
Q ss_pred ---CCCCCCCHHHHHHHHHhhccCC---CCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHh
Q 000937 713 ---IHSPHITIEESLFFSAWLRLAP---QINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGVELV 785 (1218)
Q Consensus 713 ---~~~~~lTv~e~l~~~~~~~~~~---~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L~ 785 (1218)
.+++.+||.||+.+........ .....+..+.++++++.+++. +..++.+ .+|||||||||+||++|+
T Consensus 337 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~ 411 (501)
T PRK10762 337 KRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLM 411 (501)
T ss_pred ccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHh
Confidence 5778899999998753211100 012223345688899999995 5666664 479999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 786 ANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 786 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++..|++++
T Consensus 412 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~-~G~i~~~~~~~~ 481 (501)
T PRK10762 412 TRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMH-EGRISGEFTREQ 481 (501)
T ss_pred hCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEE-CCEEEEEecccc
Confidence 999999999999999999999999999999888999999999985 6778899999997 599999998754
No 22
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.2e-56 Score=545.50 Aligned_cols=202 Identities=23% Similarity=0.323 Sum_probs=169.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc------cccceEEEeccCC--CC
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE------TFVRVSGYCEQTD--IH 714 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~ 714 (1218)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ .+|+|.++|+++... .+++.++|++|+. .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 469999999999999999999999999999999999874 389999999875321 1245689999986 47
Q ss_pred CCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000937 715 SPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFM 793 (1218)
Q Consensus 715 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llll 793 (1218)
++.+||.||+.++...+.. .....+.+++++++++.+++. +..+..+ .+|||||||||+||++|+.+|++|||
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 7889999999886532211 112233446688899999996 4556554 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 794 DEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 794 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|++
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~-~G~i~~~~~~ 510 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLR-QGEVVEQGDC 510 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEE-CCEEEEEcCH
Confidence 9999999999999999999999875 899999999975 5677899999998 5899999875
No 23
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.1e-55 Score=539.53 Aligned_cols=217 Identities=23% Similarity=0.327 Sum_probs=176.3
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC-CEe
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVN-GYP 695 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~-g~~ 695 (1218)
++++|+++.++.. ..+.+.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~---------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~ 348 (520)
T TIGR03269 280 IKVRNVSKRYISV---------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDE 348 (520)
T ss_pred EEEeccEEEeccC---------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCc
Confidence 6788888877310 00124699999999999999999999999999999999999876 48999996 532
Q ss_pred ---Ccc------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-----ccccc
Q 000937 696 ---KIQ------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-----IKESL 761 (1218)
Q Consensus 696 ---~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----~~~~~ 761 (1218)
... ...++.++|++|++.+++.+||.||+.+...+. ...+..+++++++++.+++.+ ..++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 424 (520)
T TIGR03269 349 WVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY 424 (520)
T ss_pred cccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC
Confidence 111 112456899999988889999999998754321 122223456788999999964 34554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceE
Q 000937 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDEL 840 (1218)
Q Consensus 762 ~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~ 840 (1218)
+ .+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ .+.+.+|++
T Consensus 425 ~-----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i 498 (520)
T TIGR03269 425 P-----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRA 498 (520)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEE
Confidence 3 589999999999999999999999999999999999999999999999765 999999999985 567789999
Q ss_pred EEEecCCEEEEEcCC
Q 000937 841 ILLKTGGRIIYSGPL 855 (1218)
Q Consensus 841 ~~l~~~G~~~~~g~~ 855 (1218)
++|. +|+++..|++
T Consensus 499 ~~l~-~G~i~~~g~~ 512 (520)
T TIGR03269 499 ALMR-DGKIVKIGDP 512 (520)
T ss_pred EEEE-CCEEEEECCH
Confidence 9997 5899998875
No 24
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-55 Score=547.51 Aligned_cols=227 Identities=21% Similarity=0.242 Sum_probs=183.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++....... ...+.+++|+||||+|++||+++|+||||||||||+++|+|+.+| .+|+|.++|++
T Consensus 313 ~L~~~~l~~~y~~~~~~~~---~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~ 387 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLN---RVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQR 387 (623)
T ss_pred eEEEeeeEEEEcCCCcccc---ccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEE
Confidence 4899999998852100000 000124699999999999999999999999999999999999876 48999999987
Q ss_pred Cccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCC
Q 000937 696 KIQE------TFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPG 766 (1218)
Q Consensus 696 ~~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 766 (1218)
+... .+++.++|++|++ .+++.+||.|++.+...... .....+..++++++++.+||. +..++.+
T Consensus 388 i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~---- 461 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP---- 461 (623)
T ss_pred CCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc----
Confidence 5321 2346799999986 58899999999987653321 112333456788999999995 4556553
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++|||++ .+...+|++++|.
T Consensus 462 -~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~- 538 (623)
T PRK10261 462 -HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMY- 538 (623)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 589999999999999999999999999999999999999999999999875 999999999985 5677899999997
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|++++.|+++
T Consensus 539 ~G~iv~~g~~~ 549 (623)
T PRK10261 539 LGQIVEIGPRR 549 (623)
T ss_pred CCEEEEecCHH
Confidence 59999999864
No 25
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.9e-55 Score=535.43 Aligned_cols=433 Identities=19% Similarity=0.244 Sum_probs=322.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc----cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP----QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~----~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|.++|.++..... ++.++||+|++.+++.+||+|++.|....+
T Consensus 42 liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~------- 114 (510)
T PRK15439 42 LLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKR------- 114 (510)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccc-------
Confidence 6799999999999999995 48999999998764321 235899999999999999999998853210
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
++. ...++++++.+||.+..|..++ .|||||||||+|||+++.+
T Consensus 115 -------~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 115 -------QAS------------------------MQKMKQLLAALGCQLDLDSSAG-----SLEVADRQIVEILRGLMRD 158 (510)
T ss_pred -------hHH------------------------HHHHHHHHHHcCCCccccCChh-----hCCHHHHHHHHHHHHHHcC
Confidence 000 0124677999999988887764 4999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCC
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCG 236 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG 236 (1218)
| +||+|||||+|||+.+...+.+.|+++++ .|+|||++-|.+ .++...+|+|++|.+|++++.|++++....
T Consensus 159 p-~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----- 230 (510)
T PRK15439 159 S-RILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADLSTD----- 230 (510)
T ss_pred C-CEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHcCHH-----
Confidence 7 89999999999999999999999999976 488888887653 456788999999999999999886543210
Q ss_pred CCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCccccccccccHHHHHHH
Q 000937 237 FRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFKA 316 (1218)
Q Consensus 237 ~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~ 316 (1218)
...+.+
T Consensus 231 --------------------------------~~~~~~------------------------------------------ 236 (510)
T PRK15439 231 --------------------------------DIIQAI------------------------------------------ 236 (510)
T ss_pred --------------------------------HHHHHH------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhhhhccceeee
Q 000937 317 CMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSLERLAVFYK 396 (1218)
Q Consensus 317 l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~~~r~v~~r 396 (1218)
. +....
T Consensus 237 ----------------------------------~--~~~~~-------------------------------------- 242 (510)
T PRK15439 237 ----------------------------------T--PAARE-------------------------------------- 242 (510)
T ss_pred ----------------------------------h--Ccccc--------------------------------------
Confidence 0 00000
Q ss_pred cccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHhhhHHHHHHhcccchhhhhh
Q 000937 397 QKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCFQ 476 (1218)
Q Consensus 397 e~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1218)
.. ... . . .
T Consensus 243 -~~-------------------------------------~~~-~----~-------------------------~---- 250 (510)
T PRK15439 243 -KS-------------------------------------LSA-S----Q-------------------------K---- 250 (510)
T ss_pred -cc-------------------------------------ccc-c----c-------------------------c----
Confidence 00 000 0 0 0
Q ss_pred HhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccccCCCcccHHHhhhccCcccCCcchhHHHHHHHHHHHHHHHH
Q 000937 477 LEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNFA 556 (1218)
Q Consensus 477 ~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~ 556 (1218)
. . +.
T Consensus 251 -~-----------------------~-----------------------------~~----------------------- 254 (510)
T PRK15439 251 -L-----------------------W-----------------------------LE----------------------- 254 (510)
T ss_pred -c-----------------------c-----------------------------cc-----------------------
Confidence 0 0 00
Q ss_pred HHHHHhccCCCCCCCcccccCCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhhc
Q 000937 557 FALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRE 636 (1218)
Q Consensus 557 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 636 (1218)
.+. ... . ... .+..++.+|++.
T Consensus 255 ---------~~~--------------------~~~------~----~~~-------~~~~l~~~~l~~------------ 276 (510)
T PRK15439 255 ---------LPG--------------------NRR------Q----QAA-------GAPVLTVEDLTG------------ 276 (510)
T ss_pred ---------ccc--------------------ccc------c----cCC-------CCceEEEeCCCC------------
Confidence 000 000 0 000 011356666651
Q ss_pred cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc----cccceEEEeccCC
Q 000937 637 CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE----TFVRVSGYCEQTD 712 (1218)
Q Consensus 637 ~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~ 712 (1218)
.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|.++... ..++.++|++|+.
T Consensus 277 -------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 347 (510)
T PRK15439 277 -------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR--GGRIMLNGKEINALSTAQRLARGLVYLPEDR 347 (510)
T ss_pred -------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CcEEEECCEECCCCCHHHHHhCCcEECCCCh
Confidence 1589999999999999999999999999999999987764 89999999875321 1234689999974
Q ss_pred ---CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000937 713 ---IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGVELVANP 788 (1218)
Q Consensus 713 ---~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p 788 (1218)
.+++.+|+.||+.................++.++++++.+++. +..++.+ +.|||||||||+||++|+.+|
T Consensus 348 ~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p 422 (510)
T PRK15439 348 QSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASP 422 (510)
T ss_pred hhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCC
Confidence 4788899999986421111110011222345678899999996 5666664 479999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 789 SIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 789 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
++|||||||+|||+.++..+.+.|++++++|.|||++|||++ ++.+.||++++|. +|+++..|.+++
T Consensus 423 ~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~-~G~i~~~~~~~~ 489 (510)
T PRK15439 423 QLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMH-QGEISGALTGAA 489 (510)
T ss_pred CEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEcccc
Confidence 999999999999999999999999999888999999999986 6778899999997 699999887754
No 26
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.5e-55 Score=533.02 Aligned_cols=221 Identities=18% Similarity=0.302 Sum_probs=177.3
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.+.. .+++.+|+|+|+++++||+++|+||||||||||||+|+|..+|. .+|+|.++|+++
T Consensus 258 l~~~~l~~~~~~-----------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~~G~i~~~g~~~ 325 (500)
T TIGR02633 258 LEARNLTCWDVI-----------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK-FEGNVFINGKPV 325 (500)
T ss_pred EEEeCCcccccc-----------cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC-CCeEEEECCEEC
Confidence 667777765421 01246899999999999999999999999999999999987641 379999999876
Q ss_pred cc----ccccceEEEeccCC---CCCCCCCHHHHHHHHHhhccCC--CCChhhHHHHHHHHHHHcCCCc-cccccccCCC
Q 000937 697 IQ----ETFVRVSGYCEQTD---IHSPHITIEESLFFSAWLRLAP--QINSKTKADCVNHVLKTIELDG-IKESLVGIPG 766 (1218)
Q Consensus 697 ~~----~~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~ 766 (1218)
.. ...++.++|++|+. .+++.+||+||+.++..-.... .......++.++++++.+++.+ ..++.+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 401 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI---- 401 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc----
Confidence 32 12345689999995 5788999999998753211100 1122233456788999999964 456654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||++ ++.+.+|+++++. +
T Consensus 402 -~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~-~ 478 (500)
T TIGR02633 402 -GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIG-E 478 (500)
T ss_pred -ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-C
Confidence 479999999999999999999999999999999999999999999999888999999999985 6778899999997 5
Q ss_pred CEEEEEcCCC
Q 000937 847 GRIIYSGPLG 856 (1218)
Q Consensus 847 G~~~~~g~~~ 856 (1218)
|+++..++.+
T Consensus 479 G~i~~~~~~~ 488 (500)
T TIGR02633 479 GKLKGDFVNH 488 (500)
T ss_pred CEEEEEEccc
Confidence 8999887654
No 27
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-54 Score=529.62 Aligned_cols=206 Identities=20% Similarity=0.364 Sum_probs=171.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc----ccccceEEEeccCC---CCCC
Q 000937 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ----ETFVRVSGYCEQTD---IHSP 716 (1218)
Q Consensus 644 ~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~ 716 (1218)
.+++|+|+++++||+++|+||||||||||+|+|+|..+| .+|+|.++|++... ...++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 479999999999999999999999999999999998876 48999999987532 12245689999985 4788
Q ss_pred CCCHHHHHHHHHhhccCC-C--CChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 000937 717 HITIEESLFFSAWLRLAP-Q--INSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIF 792 (1218)
Q Consensus 717 ~lTv~e~l~~~~~~~~~~-~--~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~lll 792 (1218)
.+|+.||+.+........ . ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEE
Confidence 999999998753211100 0 01222335678899999994 5667665 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCC
Q 000937 793 MDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNH 858 (1218)
Q Consensus 793 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 858 (1218)
|||||+|||+.++..++++|++++++|.|||++|||++ ++.+.+|+++++. +|++++.|++++.
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~-~g~i~~~~~~~~~ 483 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMR-EGRIAGELAREQA 483 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEE-CCEEEEEEccccC
Confidence 99999999999999999999999888999999999985 6778899999998 5899999988653
No 28
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.8e-54 Score=580.47 Aligned_cols=213 Identities=19% Similarity=0.229 Sum_probs=177.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++|+|++++|+.. ...+|+|+|++|+|||.+||+|+||||||||+++|.|+.++ .+|+|.+||.
T Consensus 1283 g~I~f~nVsf~Y~~~------------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~ 1348 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED------------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGL 1348 (1522)
T ss_pred CcEEEEEEEEEeCCC------------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCE
Confidence 368999999999531 23699999999999999999999999999999999999887 4899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 764 (1218)
++.. ...|+.+++|||++.+|+. |++|||... ...+ ++.+.++++..++. +-.|+.+|.
T Consensus 1349 dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~------~~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e 1417 (1522)
T TIGR00957 1349 NIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPF------SQYS----DEEVWWALELAHLKTFVSALPDKLDHECAE 1417 (1522)
T ss_pred EccccCHHHHHhcCeEECCCCcccCc-cHHHHcCcc------cCCC----HHHHHHHHHHcCcHHHHhhCccCCCceecC
Confidence 8653 4567889999999999875 999999521 0112 23355566666553 345777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|||+++|+++ ....+|++++|+
T Consensus 1418 ~G-~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld 1493 (1522)
T TIGR00957 1418 GG-ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLD 1493 (1522)
T ss_pred CC-CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE
Confidence 44 5799999999999999999999999999999999999999999999864 4899999999874 577899999998
Q ss_pred cCCEEEEEcCCCC
Q 000937 845 TGGRIIYSGPLGN 857 (1218)
Q Consensus 845 ~~G~~~~~g~~~~ 857 (1218)
+|++++.|++++
T Consensus 1494 -~G~IvE~G~~~e 1505 (1522)
T TIGR00957 1494 -KGEVAEFGAPSN 1505 (1522)
T ss_pred -CCEEEEECCHHH
Confidence 699999999753
No 29
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-53 Score=518.73 Aligned_cols=429 Identities=17% Similarity=0.239 Sum_probs=319.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhh-ccCCCCch
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV----PQKLSAYVSQYDLHIPEMTVRETLDFSTY-CQGVGSRA 75 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~----~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~-lk~~~~~~ 75 (1218)
|.|++|||||||.+...|. .+|+|++||.++.... .++.++||+|+..+++.+||+|++.|... .++..
T Consensus 29 liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~--- 105 (491)
T PRK10982 29 LMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMF--- 105 (491)
T ss_pred EECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccc---
Confidence 6799999999999999995 4899999999875432 23468999999989999999999988532 11000
Q ss_pred hhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhh
Q 000937 76 DILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLV 155 (1218)
Q Consensus 76 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~ 155 (1218)
.+.++. ...++.+++.+||.+..|..++ .|||||||||+|||+++.
T Consensus 106 -----~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 106 -----VDQDKM------------------------YRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred -----cCHHHH------------------------HHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHHh
Confidence 000000 0124677899999888887764 599999999999999998
Q ss_pred CCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhC
Q 000937 156 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESC 235 (1218)
Q Consensus 156 ~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~l 235 (1218)
+| +||+|||||+|||+.+...+.+.|+++++ .|+|+|++-|.+ .++...+|+|++|.+|++++.|++++...
T Consensus 152 ~p-~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~----- 223 (491)
T PRK10982 152 NA-KIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGLTM----- 223 (491)
T ss_pred CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhCCH-----
Confidence 88 79999999999999999999999999975 578888876654 46778899999999999998776432100
Q ss_pred CCCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCccccccccccHHHHHH
Q 000937 236 GFRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315 (1218)
Q Consensus 236 G~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~ 315 (1218)
. +
T Consensus 224 --------------------------------~-----------------~----------------------------- 225 (491)
T PRK10982 224 --------------------------------D-----------------K----------------------------- 225 (491)
T ss_pred --------------------------------H-----------------H-----------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhhhhccceee
Q 000937 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSLERLAVFY 395 (1218)
Q Consensus 316 ~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~~~r~v~~ 395 (1218)
...+ + . +.+.
T Consensus 226 -~~~~-~----------------------------~--~~~~-------------------------------------- 235 (491)
T PRK10982 226 -IIAM-M----------------------------V--GRSL-------------------------------------- 235 (491)
T ss_pred -HHHH-H----------------------------h--CCCc--------------------------------------
Confidence 0000 0 0 0000
Q ss_pred ecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHhhhHHHHHHhcccchhhhh
Q 000937 396 KQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCF 475 (1218)
Q Consensus 396 re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1218)
. . .
T Consensus 236 --------------------------------------------------~----------------------~--~--- 238 (491)
T PRK10982 236 --------------------------------------------------T----------------------Q--R--- 238 (491)
T ss_pred --------------------------------------------------c----------------------c--c---
Confidence 0 0 0
Q ss_pred hHhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccccCCCcccHHHhhhccCcccCCcchhHHHHHHHHHHHHHHH
Q 000937 476 QLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNF 555 (1218)
Q Consensus 476 ~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~ 555 (1218)
T Consensus 239 -------------------------------------------------------------------------------- 238 (491)
T PRK10982 239 -------------------------------------------------------------------------------- 238 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhccCCCCCCCcccccCCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhh
Q 000937 556 AFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRR 635 (1218)
Q Consensus 556 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 635 (1218)
.+. ... .. .+..++++|+++..
T Consensus 239 ----------~~~--------------------~~~------------~~-------~~~~i~~~~l~~~~--------- 260 (491)
T PRK10982 239 ----------FPD--------------------KEN------------KP-------GEVILEVRNLTSLR--------- 260 (491)
T ss_pred ----------ccc--------------------ccC------------CC-------CCcEEEEeCccccc---------
Confidence 000 000 00 01236777777641
Q ss_pred ccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc----cccceEEEeccC
Q 000937 636 ECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE----TFVRVSGYCEQT 711 (1218)
Q Consensus 636 ~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~ 711 (1218)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.++... ..++.++|++|+
T Consensus 261 -------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~ 331 (491)
T PRK10982 261 -------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEE 331 (491)
T ss_pred -------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCc
Confidence 2489999999999999999999999999999999998876 489999999876421 124558999998
Q ss_pred C---CCCCCCCHHHHHHHHHh--h-ccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000937 712 D---IHSPHITIEESLFFSAW--L-RLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGVEL 784 (1218)
Q Consensus 712 ~---~~~~~lTv~e~l~~~~~--~-~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L 784 (1218)
. .+++++|+.+|..+... . ...........++.++++++.+++. +..++.+ .+|||||||||+||++|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al 406 (491)
T PRK10982 332 RRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWL 406 (491)
T ss_pred hhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHH
Confidence 5 36788888877432210 0 0000011223345678889999885 3455554 48999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 785 VANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 785 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|. +|+++..++..
T Consensus 407 ~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~-~g~i~~~~~~~ 476 (491)
T PRK10982 407 LTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMS-NGLVAGIVDTK 476 (491)
T ss_pred hcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEE-CCEEEEEEccc
Confidence 9999999999999999999999999999999888999999999985 5778899999997 58999877654
No 30
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.6e-52 Score=561.26 Aligned_cols=212 Identities=22% Similarity=0.255 Sum_probs=178.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
-.|+|+|++++|+. +...+|+||||+|+|||.+||+|+||||||||+++|.|+.++ .+|+|++||.
T Consensus 1307 G~I~f~nVsf~Y~~------------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~ 1372 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE------------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGR 1372 (1560)
T ss_pred CeEEEEEEEEEeCC------------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCE
Confidence 36999999999952 123599999999999999999999999999999999999887 4899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 764 (1218)
++.. ..+++.++||||++.+|+. |++|||... ...+ ++.+.++++..++.+ -.|+.+|.
T Consensus 1373 di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge 1441 (1560)
T PTZ00243 1373 EIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLE 1441 (1560)
T ss_pred EcccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccC
Confidence 8653 4567889999999998874 999999531 1111 244666777766643 35677776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 765 PGVSGLSTEQRKRLTIGVELVAN-PSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~-p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
.+ ..||||||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. +++|||+++|++ +....+|++++|
T Consensus 1442 ~G-~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVL 1517 (1560)
T PTZ00243 1442 GG-SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVM 1517 (1560)
T ss_pred Cc-CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEE
Confidence 44 57999999999999999995 89999999999999999999999999864 479999999987 457889999999
Q ss_pred ecCCEEEEEcCCC
Q 000937 844 KTGGRIIYSGPLG 856 (1218)
Q Consensus 844 ~~~G~~~~~g~~~ 856 (1218)
+ +|++++.|+++
T Consensus 1518 d-~G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1518 D-HGAVAEMGSPR 1529 (1560)
T ss_pred E-CCEEEEECCHH
Confidence 8 59999999874
No 31
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.2e-52 Score=509.44 Aligned_cols=216 Identities=19% Similarity=0.293 Sum_probs=168.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..+|+|.++|++
T Consensus 260 ~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~ 324 (490)
T PRK10938 260 RIVLNNGVVSYN--------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRR 324 (490)
T ss_pred eEEEeceEEEEC--------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEeccc
Confidence 478999998873 24699999999999999999999999999999999997543 137999999976
Q ss_pred Ccc----ccccceEEEeccCCCCCC--CCCHHHHHHHHHhh--ccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCC
Q 000937 696 KIQ----ETFVRVSGYCEQTDIHSP--HITIEESLFFSAWL--RLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPG 766 (1218)
Q Consensus 696 ~~~----~~~~~~~~~v~q~~~~~~--~lTv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~ 766 (1218)
... ...++.++|++|++.+++ ..|+++++.+.... ..... .....+++++++++.+++.+ ..++.+
T Consensus 325 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 399 (490)
T PRK10938 325 RGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQA-VSDRQQKLAQQWLDILGIDKRTADAPF---- 399 (490)
T ss_pred CCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccC-CCHHHHHHHHHHHHHcCCchhhccCch----
Confidence 421 123456999999875543 35777766543211 00011 11223456889999999986 666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEecCCCHHHHH-hhceEEEEe
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTG-RTIVCTIHQPSIDIFE-SFDELILLK 844 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~~~~-~~d~~~~l~ 844 (1218)
.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++||+++ ++.+ .+|++++|.
T Consensus 400 -~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~ 477 (490)
T PRK10938 400 -HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVP 477 (490)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEec
Confidence 4799999999999999999999999999999999999999999999998776 47999999985 4555 478888887
Q ss_pred cCCEEEEEcC
Q 000937 845 TGGRIIYSGP 854 (1218)
Q Consensus 845 ~~G~~~~~g~ 854 (1218)
+|+++..-.
T Consensus 478 -~G~i~~~~~ 486 (490)
T PRK10938 478 -DGDIYRYVQ 486 (490)
T ss_pred -CCceEEeec
Confidence 588876543
No 32
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-50 Score=513.57 Aligned_cols=214 Identities=21% Similarity=0.281 Sum_probs=175.0
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
.-.++|+|++..|.. +...+|+|||++|+|||.+||+|..|||||||.++|-++..+ .+|+|.+||
T Consensus 1136 ~G~I~f~~~~~RYrp------------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDg 1201 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRP------------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP--AEGEILIDG 1201 (1381)
T ss_pred CCeEEEEEeEEEeCC------------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcC
Confidence 357999999999853 234799999999999999999999999999999999998776 489999999
Q ss_pred EeCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------cccccccc
Q 000937 694 YPKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVG 763 (1218)
Q Consensus 694 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~ 763 (1218)
.++.. ...|++++.+|||+.+|. -|+|.||. |.+ +-.++.+.++++..+|. +-.|..+.
T Consensus 1202 vdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLD-------Pf~---e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~ 1270 (1381)
T KOG0054|consen 1202 VDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLD-------PFD---EYSDDEIWEALERCQLKDVVSSLPGGLDSEVS 1270 (1381)
T ss_pred eecccccHHHHHhcCeeeCCCCceec-CccccccC-------ccc---ccCHHHHHHHHHHhChHHHHhhCCcCCCceec
Confidence 99764 457888999999999986 59999984 111 11123344555554443 23455555
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
.. ..++|-||||.+++||||+++++||+|||+|++.|+++-..|.+.||+-= +++|||.+.|+.+ ..-.+|+|+||
T Consensus 1271 eg-G~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~--TVmd~DrVlVl 1346 (1381)
T KOG0054|consen 1271 EG-GENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLN--TVMDSDRVLVL 1346 (1381)
T ss_pred CC-CccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccc--hhhhcCeEEEe
Confidence 43 36899999999999999999999999999999999999999999999843 4799999999986 35579999999
Q ss_pred ecCCEEEEEcCCCC
Q 000937 844 KTGGRIIYSGPLGN 857 (1218)
Q Consensus 844 ~~~G~~~~~g~~~~ 857 (1218)
+ .|+++++|+|.+
T Consensus 1347 d-~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1347 D-AGRVVEFDSPAE 1359 (1381)
T ss_pred e-CCeEeecCChHH
Confidence 8 599999999854
No 33
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.7e-51 Score=549.73 Aligned_cols=212 Identities=19% Similarity=0.275 Sum_probs=177.8
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++|+|++++|+. +.+.+|+|+|++|+|||.+||+|+||||||||+++|.|+.+ .+|+|.+||.
T Consensus 1216 g~I~f~nVs~~Y~~------------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~ 1280 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE------------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGV 1280 (1490)
T ss_pred CeEEEEEEEEEeCC------------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCE
Confidence 46899999999952 23479999999999999999999999999999999999875 3799999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 764 (1218)
++.. ..+++.++||||++.+|+. |+||||.... . ..++.+.++++..++. +-.|+.++.
T Consensus 1281 di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~----~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e 1349 (1490)
T TIGR01271 1281 SWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------Q----WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD 1349 (1490)
T ss_pred EcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------C----CCHHHHHHHHHHCCCHHHHHhCcccccccccc
Confidence 8653 3567889999999999875 9999995311 1 1234466777777664 235677775
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.| ..||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....+|++++|+
T Consensus 1350 ~G-~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~ 1425 (1490)
T TIGR01271 1350 GG-YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIE 1425 (1490)
T ss_pred CC-CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE
Confidence 43 5799999999999999999999999999999999999999999999864 4799999999874 567899999998
Q ss_pred cCCEEEEEcCCCC
Q 000937 845 TGGRIIYSGPLGN 857 (1218)
Q Consensus 845 ~~G~~~~~g~~~~ 857 (1218)
+|+++..|++.+
T Consensus 1426 -~G~ivE~g~p~~ 1437 (1490)
T TIGR01271 1426 -GSSVKQYDSIQK 1437 (1490)
T ss_pred -CCEEEEeCCHHH
Confidence 599999998743
No 34
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=5.8e-51 Score=441.45 Aligned_cols=229 Identities=24% Similarity=0.346 Sum_probs=188.8
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
+.++.+|+...++.+..+-+. ......++++||+++++||.++|+|.||||||||=.+|.++.++ +|+|.++|+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r---~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~ 348 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRR---TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQ 348 (534)
T ss_pred ceEEecceEEEEecCCccccc---cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCc
Confidence 446666776666654332211 11235789999999999999999999999999999999998876 699999999
Q ss_pred eCcc------ccccceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCC
Q 000937 695 PKIQ------ETFVRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPG 766 (1218)
Q Consensus 695 ~~~~------~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 766 (1218)
++.. ...++.+-.|+||+. +.|.+||.|-+.-+.....+ ..+..++.+++.+++++.||+.-. +...
T Consensus 349 ~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~--r~RY-- 423 (534)
T COG4172 349 DIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT--RNRY-- 423 (534)
T ss_pred cccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH--hhcC--
Confidence 8653 235677889999974 78999999999887765533 456778889999999999998532 2222
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+.+.|||||||++||||++.+|++++||||||+||-.-+.+|+++|++|.++ |.+-++++||+. -+-.+||++++|.
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~- 501 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMR- 501 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEe-
Confidence 3689999999999999999999999999999999999999999999999755 999999999985 4567899999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|++|++|+.+
T Consensus 502 ~GkiVE~G~~~ 512 (534)
T COG4172 502 DGKIVEQGPTE 512 (534)
T ss_pred CCEEeeeCCHH
Confidence 69999999963
No 35
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-49 Score=488.34 Aligned_cols=198 Identities=21% Similarity=0.311 Sum_probs=165.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+|. +|+|.++|.
T Consensus 319 ~l~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~--~G~i~~~~~- 381 (530)
T PRK15064 319 ALEVENLTKGFD--------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD--SGTVKWSEN- 381 (530)
T ss_pred eEEEEeeEEeeC--------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCc-
Confidence 589999999873 246999999999999999999999999999999999988764 899999873
Q ss_pred CccccccceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 000937 696 KIQETFVRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLST 772 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSg 772 (1218)
+.+||++|+.. +++.+||.|++.+.. . . ...+++++++++.+++. +..+..+ .+|||
T Consensus 382 -------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~-~----~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 441 (530)
T PRK15064 382 -------ANIGYYAQDHAYDFENDLTLFDWMSQWR---Q-E----GDDEQAVRGTLGRLLFSQDDIKKSV-----KVLSG 441 (530)
T ss_pred -------eEEEEEcccccccCCCCCcHHHHHHHhc---c-C----CccHHHHHHHHHHcCCChhHhcCcc-----cccCH
Confidence 45899999863 556799999986421 1 0 11234578899999984 5556554 48999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-E
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII-Y 851 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~ 851 (1218)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++|||++ .+...+|++++|. +|+++ +
T Consensus 442 Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~-~g~i~~~ 516 (530)
T PRK15064 442 GEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEIT-PDGVVDF 516 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEc
Confidence 9999999999999999999999999999999999999999886 459999999975 5667899999998 58887 7
Q ss_pred EcCC
Q 000937 852 SGPL 855 (1218)
Q Consensus 852 ~g~~ 855 (1218)
.|++
T Consensus 517 ~g~~ 520 (530)
T PRK15064 517 SGTY 520 (530)
T ss_pred CCCH
Confidence 7764
No 36
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.2e-49 Score=486.74 Aligned_cols=201 Identities=21% Similarity=0.341 Sum_probs=164.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+|. +|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~--~G~i~~~~-~ 386 (556)
T PRK11819 324 VIEAENLSKSFG--------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD--SGTIKIGE-T 386 (556)
T ss_pred EEEEEeEEEEEC--------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECC-c
Confidence 588999998873 246999999999999999999999999999999999988764 89999854 1
Q ss_pred CccccccceEEEeccCC-CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHH
Q 000937 696 KIQETFVRVSGYCEQTD-IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgG 773 (1218)
..+||++|+. .+++.+||.||+.+...... ... .....+++++.+++.+ ..+..+ .+||||
T Consensus 387 -------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 449 (556)
T PRK11819 387 -------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGN--REIPSRAYVGRFNFKGGDQQKKV-----GVLSGG 449 (556)
T ss_pred -------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---ccc--cHHHHHHHHHhCCCChhHhcCch-----hhCCHH
Confidence 1489999986 67889999999987642211 111 1123456889999864 445554 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EE
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII-YS 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~ 852 (1218)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++||+++ .+...+|+++++.++|++. +.
T Consensus 450 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~ 525 (556)
T PRK11819 450 ERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFE 525 (556)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEec
Confidence 9999999999999999999999999999999999999999873 4 8999999975 5677899999997557765 34
Q ss_pred cC
Q 000937 853 GP 854 (1218)
Q Consensus 853 g~ 854 (1218)
|+
T Consensus 526 g~ 527 (556)
T PRK11819 526 GN 527 (556)
T ss_pred CC
Confidence 43
No 37
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.8e-49 Score=486.23 Aligned_cols=201 Identities=21% Similarity=0.327 Sum_probs=163.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+| .+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~~- 384 (552)
T TIGR03719 322 VIEAENLSKGFG--------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGET- 384 (552)
T ss_pred EEEEeeEEEEEC--------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECCc-
Confidence 488999998873 24699999999999999999999999999999999998876 4899998541
Q ss_pred CccccccceEEEeccCC-CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHH
Q 000937 696 KIQETFVRVSGYCEQTD-IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgG 773 (1218)
..+||++|+. .+++.+||.|++.+...... .... ....+++++.+++.+ ..+..+ ..||||
T Consensus 385 -------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 447 (552)
T TIGR03719 385 -------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGG 447 (552)
T ss_pred -------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHH
Confidence 1489999986 47788999999987642211 1111 223557889999864 445554 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EE
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII-YS 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~ 852 (1218)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||+++ .+...+|++++|.++|++. +.
T Consensus 448 e~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~ 523 (552)
T TIGR03719 448 ERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFE 523 (552)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeC
Confidence 9999999999999999999999999999999999999999873 3 8999999975 5667899999997556765 33
Q ss_pred cC
Q 000937 853 GP 854 (1218)
Q Consensus 853 g~ 854 (1218)
|+
T Consensus 524 g~ 525 (552)
T TIGR03719 524 GN 525 (552)
T ss_pred CC
Confidence 43
No 38
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.7e-48 Score=474.23 Aligned_cols=211 Identities=21% Similarity=0.280 Sum_probs=173.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ + ..|+++|+++++||+++|+||||||||||+++|+|..+|. +|+|.++
T Consensus 340 ~l~~~~ls~~~~--------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~--~G~I~~~--- 399 (590)
T PRK13409 340 LVEYPDLTKKLG--------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD--EGEVDPE--- 399 (590)
T ss_pred EEEEcceEEEEC--------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEe---
Confidence 478999988763 1 2489999999999999999999999999999999998774 8999885
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
..++|++|+..+.+.+||+|++.+.... .. ....++++++.+++.+..++.+ .+||||||
T Consensus 400 -------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~---~~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~ 459 (590)
T PRK13409 400 -------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LG---SSYYKSEIIKPLQLERLLDKNV-----KDLSGGEL 459 (590)
T ss_pred -------eeEEEecccccCCCCCcHHHHHHHHhhh-----cC---hHHHHHHHHHHCCCHHHHhCCc-----ccCCHHHH
Confidence 1489999998888899999999875211 11 1234678999999987777664 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcC
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 854 (1218)
|||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|||+. .+...+|+++++. |++...|.
T Consensus 460 QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~ 536 (590)
T PRK13409 460 QRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGH 536 (590)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeee
Confidence 9999999999999999999999999999999999999999775 899999999975 5667899999995 57887777
Q ss_pred CCCC---chhhhhhhhcC
Q 000937 855 LGNH---SSRVIEYFEGI 869 (1218)
Q Consensus 855 ~~~~---~~~~~~~f~~~ 869 (1218)
..+. ...+..|++.+
T Consensus 537 ~~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 537 ASGPMDMREGMNRFLKEL 554 (590)
T ss_pred cCCchhHHHHHHHHHHHc
Confidence 5432 12234455554
No 39
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-47 Score=386.43 Aligned_cols=216 Identities=25% Similarity=0.405 Sum_probs=190.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++.++. ..++|+|||++|++||+++|+||||||||||||+|.++..++ +|+|.++|.+
T Consensus 2 mi~i~~l~K~fg--------------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~--~G~I~i~g~~ 65 (240)
T COG1126 2 MIEIKNLSKSFG--------------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD--SGSITVDGED 65 (240)
T ss_pred eEEEEeeeEEeC--------------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC--CceEEECCEe
Confidence 368899998883 468999999999999999999999999999999999998874 8999999976
Q ss_pred Ccc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
... ...|+.+|+|+|+..+||++||.||+..+...- ...++++.++.+.++|+.+||.+.+|... .+||
T Consensus 66 ~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLS 138 (240)
T COG1126 66 VGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLS 138 (240)
T ss_pred ccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccC
Confidence 532 346788999999999999999999999875432 23456777788899999999998888763 5899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||||+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.||+||++.. .-+.+||++.|+ +|+++.
T Consensus 139 GGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd-~G~iie 216 (240)
T COG1126 139 GGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMD-QGKIIE 216 (240)
T ss_pred cHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEee-CCEEEE
Confidence 999999999999999999999999999999999999999999999999999999998753 456689999997 699999
Q ss_pred EcCCC
Q 000937 852 SGPLG 856 (1218)
Q Consensus 852 ~g~~~ 856 (1218)
.|+++
T Consensus 217 ~g~p~ 221 (240)
T COG1126 217 EGPPE 221 (240)
T ss_pred ecCHH
Confidence 99763
No 40
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-46 Score=464.15 Aligned_cols=198 Identities=24% Similarity=0.368 Sum_probs=162.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|||||||||||++|+|..+|. +|+|.+++.
T Consensus 312 ~l~~~~l~~~y~--------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~--~G~i~~~~~- 374 (638)
T PRK10636 312 LLKMEKVSAGYG--------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV--SGEIGLAKG- 374 (638)
T ss_pred eEEEEeeEEEeC--------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCC-
Confidence 588999998873 246999999999999999999999999999999999988764 899999741
Q ss_pred CccccccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCCCH
Q 000937 696 KIQETFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGLST 772 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSg 772 (1218)
..+||++|+. .+.+..|+.+++.- . . .....+.+.++++.+++.+ ..++.+ ..|||
T Consensus 375 -------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~----~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSg 433 (638)
T PRK10636 375 -------IKLGYFAQHQLEFLRADESPLQHLAR---L--A----PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSG 433 (638)
T ss_pred -------EEEEEecCcchhhCCccchHHHHHHH---h--C----chhhHHHHHHHHHHcCCChhHhcCch-----hhCCH
Confidence 2589999974 34566778776531 1 1 1122355788999999863 456554 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-E
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII-Y 851 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~ 851 (1218)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ .| |||++|||+. .+...||+++++. +|+++ +
T Consensus 434 GekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~-~G~i~~~ 508 (638)
T PRK10636 434 GEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVH-DGKVEPF 508 (638)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEc
Confidence 9999999999999999999999999999999999999999987 34 9999999975 5667899999998 58887 7
Q ss_pred EcCCC
Q 000937 852 SGPLG 856 (1218)
Q Consensus 852 ~g~~~ 856 (1218)
.|+.+
T Consensus 509 ~g~~~ 513 (638)
T PRK10636 509 DGDLE 513 (638)
T ss_pred CCCHH
Confidence 78753
No 41
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.1e-45 Score=457.25 Aligned_cols=202 Identities=23% Similarity=0.346 Sum_probs=163.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|++|++|++++|+|||||||||||++|+|..+| .+|+|.+ |.+
T Consensus 319 ~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~ 381 (635)
T PRK11147 319 VFEMENVNYQID--------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTK 381 (635)
T ss_pred eEEEeeeEEEEC--------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCC
Confidence 578999998873 24699999999999999999999999999999999998776 4899998 432
Q ss_pred CccccccceEEEeccCC-CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHH
Q 000937 696 KIQETFVRVSGYCEQTD-IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgG 773 (1218)
-.+||++|+. .+++.+||.|++.+.... . ... .....+.++++.+++. +..++.+ ..||||
T Consensus 382 -------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~--~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 444 (635)
T PRK11147 382 -------LEVAYFDQHRAELDPEKTVMDNLAEGKQE-V--MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGG 444 (635)
T ss_pred -------cEEEEEeCcccccCCCCCHHHHHHhhccc-c--ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHH
Confidence 1489999975 578899999999875321 0 001 1234567788888885 3455554 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE-E
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY-S 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~-~ 852 (1218)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||.. .+...+|+++++.++|++.. .
T Consensus 445 ekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~ 520 (635)
T PRK11147 445 ERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYV 520 (635)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEcc
Confidence 999999999999999999999999999999999999999876 459999999974 56678999999963477654 4
Q ss_pred cCC
Q 000937 853 GPL 855 (1218)
Q Consensus 853 g~~ 855 (1218)
|+.
T Consensus 521 g~y 523 (635)
T PRK11147 521 GGY 523 (635)
T ss_pred CCH
Confidence 543
No 42
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=9.9e-45 Score=451.23 Aligned_cols=200 Identities=18% Similarity=0.299 Sum_probs=158.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ +++.+|+|+|++|++||+++|+|||||||||||++|+|..+| .+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~-------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~- 571 (718)
T PLN03073 508 IISFSDASFGYP-------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK- 571 (718)
T ss_pred eEEEEeeEEEeC-------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc-
Confidence 588999999873 123699999999999999999999999999999999998876 4899998752
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGe 774 (1218)
..+||++|+. .+.+++.++.........+ .. ..+.++++++.+++.+ ..+..+ ..|||||
T Consensus 572 -------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~----~~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGq 632 (718)
T PLN03073 572 -------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQPM-----YTLSGGQ 632 (718)
T ss_pred -------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CC----CHHHHHHHHHHCCCChHHhcCCc-----cccCHHH
Confidence 3589999975 3445666664332111111 11 1345778899999973 445443 5799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII-YSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g 853 (1218)
||||+||++|+.+|++|+|||||+|||+.++..+.+.|++. .| |||++|||+. .+...+|++++|. +|+++ +.|
T Consensus 633 kqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~-~G~i~~~~g 707 (718)
T PLN03073 633 KSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVS-EGKVTPFHG 707 (718)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCC
Confidence 99999999999999999999999999999999998888764 34 9999999975 5667899999997 58987 667
Q ss_pred CC
Q 000937 854 PL 855 (1218)
Q Consensus 854 ~~ 855 (1218)
+.
T Consensus 708 ~~ 709 (718)
T PLN03073 708 TF 709 (718)
T ss_pred CH
Confidence 64
No 43
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-43 Score=405.45 Aligned_cols=431 Identities=21% Similarity=0.331 Sum_probs=326.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcccc----ceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVPQ----KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~~----~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|-+|||||||.|..+|. .+|+|.+||.+..-.+.+ .-++.|.||-.++|+|||.||+.+..+.+.+..
T Consensus 39 L~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g--- 115 (500)
T COG1129 39 LLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFG--- 115 (500)
T ss_pred EecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCC---
Confidence 7899999999999999994 679999999998755433 346789999999999999999988654332100
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
-+.+++ + ......+|+.+|+....|+.||+ ||+||||-|.|||++..+
T Consensus 116 ---~id~~~----------m--------------~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 116 ---LIDRKA----------M--------------RRRARELLARLGLDIDPDTLVGD-----LSIAQRQMVEIARALSFD 163 (500)
T ss_pred ---ccCHHH----------H--------------HHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHHHHHHHHHhcC
Confidence 000110 0 11246679999997668998876 999999999999998886
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecCh-hhHHHHHHhC
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPR-ESVLEFFESC 235 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~-~~l~~yF~~l 235 (1218)
+ +|++||||||+|+...+..+.+.++++.. +|.++|..= |...|+++.+|+|.||.+|+.|-.++. .+.-.
T Consensus 164 a-rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~IS-Hrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~----- 235 (500)
T COG1129 164 A-RVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYIS-HRLDEVFEIADRITVLRDGRVVGTRPTAAETSE----- 235 (500)
T ss_pred C-CEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEc-CcHHHHHHhcCEEEEEeCCEEeeecccccCCCH-----
Confidence 6 89999999999999999999999999975 688887754 488999999999999999999988663 21000
Q ss_pred CCCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCccccccccccHHHHHH
Q 000937 236 GFRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315 (1218)
Q Consensus 236 G~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~ 315 (1218)
+++ .
T Consensus 236 --------------------------------~~l-----------------v--------------------------- 239 (500)
T COG1129 236 --------------------------------DEL-----------------V--------------------------- 239 (500)
T ss_pred --------------------------------HHH-----------------H---------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhhhhccceee
Q 000937 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSLERLAVFY 395 (1218)
Q Consensus 316 ~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~~~r~v~~ 395 (1218)
+
T Consensus 240 ----~--------------------------------------------------------------------------- 240 (500)
T COG1129 240 ----R--------------------------------------------------------------------------- 240 (500)
T ss_pred ----H---------------------------------------------------------------------------
Confidence 0
Q ss_pred ecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHhhhHHHHHHhcccchhhhh
Q 000937 396 KQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCF 475 (1218)
Q Consensus 396 re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1218)
+|+|= ...
T Consensus 241 -------------------------------------~MvGr--------------------------------~~~--- 248 (500)
T COG1129 241 -------------------------------------LMVGR--------------------------------ELE--- 248 (500)
T ss_pred -------------------------------------HhhCc--------------------------------chh---
Confidence 00000 000
Q ss_pred hHhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccccCCCcccHHHhhhccCcccCCcchhHHHHHHHHHHHHHHH
Q 000937 476 QLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNF 555 (1218)
Q Consensus 476 ~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~ 555 (1218)
..
T Consensus 249 ------------------------------------------------------------~~------------------ 250 (500)
T COG1129 249 ------------------------------------------------------------DL------------------ 250 (500)
T ss_pred ------------------------------------------------------------hh------------------
Confidence 00
Q ss_pred HHHHHHhccCCCCCCCcccccCCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhh
Q 000937 556 AFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRR 635 (1218)
Q Consensus 556 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 635 (1218)
.+. . . .. ...+..++++|++.
T Consensus 251 ----------~~~-~-~----------------~~--------------------~~~~~~l~v~~l~~----------- 271 (500)
T COG1129 251 ----------FPE-P-P----------------EE--------------------GIGEPVLEVRNLSG----------- 271 (500)
T ss_pred ----------ccc-c-c----------------cc--------------------CCCCcEEEEecCCC-----------
Confidence 000 0 0 00 00123355555442
Q ss_pred ccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc----cccceEEEeccC
Q 000937 636 ECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE----TFVRVSGYCEQT 711 (1218)
Q Consensus 636 ~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~ 711 (1218)
...++|+||++++||+++|-|-=|||+|-|+++|.|..++ .+|+|.+||++.... ..+..++|||.|
T Consensus 272 -------~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~--~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~ED 342 (500)
T COG1129 272 -------GGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA--SSGEILLDGKPVRIRSPRDAIKAGIAYVPED 342 (500)
T ss_pred -------CCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC--CCceEEECCEEccCCCHHHHHHcCCEeCCcc
Confidence 1248899999999999999999999999999999996655 389999999985432 345579999987
Q ss_pred ---CCCCCCCCHHHHHHHHHhhccCC--CCChhhHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHh
Q 000937 712 ---DIHSPHITIEESLFFSAWLRLAP--QINSKTKADCVNHVLKTIELDGI-KESLVGIPGVSGLSTEQRKRLTIGVELV 785 (1218)
Q Consensus 712 ---~~~~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGerqRv~ia~~L~ 785 (1218)
+-++..++|++|+.++...+... -.......+.+++..+.+++.-. .+.. +..||||.+|||.|||.|.
T Consensus 343 Rk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~ 417 (500)
T COG1129 343 RKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLA 417 (500)
T ss_pred cccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHh
Confidence 45788999999998873222211 23344455678888898888532 2333 3589999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 786 ANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 786 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
.+|++|+|||||.|.|.-++.+|.++|++++++|++||++|-++. |+..+|||+++|. +|+++..-+.++
T Consensus 418 ~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~-~Gri~~e~~~~~ 487 (500)
T COG1129 418 TDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMR-EGRIVGELDREE 487 (500)
T ss_pred cCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEE-CCEEEEEecccc
Confidence 999999999999999999999999999999999999999999984 8999999999998 699987655543
No 44
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.4e-44 Score=371.11 Aligned_cols=231 Identities=26% Similarity=0.393 Sum_probs=200.1
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++++++++ +.+.|++|||++|++||+++|+||||+|||||||+|.|+.+|. +|+|.++|+
T Consensus 7 ~~I~vr~v~~~f--------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~--~GeI~i~G~ 70 (263)
T COG1127 7 PLIEVRGVTKSF--------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD--KGEILIDGE 70 (263)
T ss_pred ceEEEeeeeeec--------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC--CCeEEEcCc
Confidence 468999999887 3568999999999999999999999999999999999999884 899999999
Q ss_pred eCcc------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-ccccccCCCC
Q 000937 695 PKIQ------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGIPGV 767 (1218)
Q Consensus 695 ~~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~ 767 (1218)
++.. ...++++|+++|+-.+|..+||+||+.|..+- ....+++..++.+..-++..||... .+.. +
T Consensus 71 ~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre--~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----P 143 (263)
T COG1127 71 DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE--HTKLPESLIRELVLMKLELVGLRGAAADLY-----P 143 (263)
T ss_pred chhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh--hccCCHHHHHHHHHHHHHhcCCChhhhhhC-----c
Confidence 8532 13467899999999999999999999986543 2345566677778888889999876 4544 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
.+|||||+||++||||++.||+++|+||||+||||.++..+.++++++.+. |.|++++|||.+ +++..+|+++++. +
T Consensus 144 sELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~-~ 221 (263)
T COG1127 144 SELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLA-D 221 (263)
T ss_pred hhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEe-C
Confidence 689999999999999999999999999999999999999999999999877 999999999986 7899999999998 5
Q ss_pred CEEEEEcCCCCC----chhhhhhhhcCC
Q 000937 847 GRIIYSGPLGNH----SSRVIEYFEGIP 870 (1218)
Q Consensus 847 G~~~~~g~~~~~----~~~~~~~f~~~~ 870 (1218)
|+++..|++++. ..-+.+||.+..
T Consensus 222 gkv~~~Gt~~el~~sd~P~v~qf~~G~~ 249 (263)
T COG1127 222 GKVIAEGTPEELLASDDPWVRQFFNGIR 249 (263)
T ss_pred CEEEEeCCHHHHHhCCCHHHHHHhcCCC
Confidence 999999998752 345677887653
No 45
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-44 Score=371.26 Aligned_cols=215 Identities=25% Similarity=0.375 Sum_probs=193.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++|+|+++.+. ++.+++|+|++|++||+++++|||||||||+||+|.++..|+ +|+|++||+++
T Consensus 2 I~~~nvsk~y~--------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept--~G~I~i~g~~i 65 (309)
T COG1125 2 IEFENVSKRYG--------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT--SGEILIDGEDI 65 (309)
T ss_pred ceeeeeehhcC--------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC--CceEEECCeec
Confidence 57899988773 468999999999999999999999999999999999998874 99999999986
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc--cccccccCCCCCCCC
Q 000937 697 IQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG--IKESLVGIPGVSGLS 771 (1218)
Q Consensus 697 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~LS 771 (1218)
.. ...|+.+|||-|...+||++||.||+.+...+. .+++++.+++++++++.+||+. ..++. +++||
T Consensus 66 ~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLS 137 (309)
T COG1125 66 SDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELS 137 (309)
T ss_pred ccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcC
Confidence 54 356889999999999999999999999877664 3567778889999999999974 55554 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||+|||.+||||+.+|++|++|||+++|||.++.++.+.++++.++ |+|||++|||.+ |.+.+.|++.+|+ +|+++
T Consensus 138 GGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~ 215 (309)
T COG1125 138 GGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIV 215 (309)
T ss_pred cchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEE
Confidence 99999999999999999999999999999999999999999999876 999999999987 7899999999998 69999
Q ss_pred EEcCCCC
Q 000937 851 YSGPLGN 857 (1218)
Q Consensus 851 ~~g~~~~ 857 (1218)
..++|++
T Consensus 216 Q~~~P~~ 222 (309)
T COG1125 216 QYDTPDE 222 (309)
T ss_pred EeCCHHH
Confidence 9998854
No 46
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-44 Score=381.23 Aligned_cols=220 Identities=23% Similarity=0.329 Sum_probs=192.4
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
+++++++..+... ..+...+|+|||++|++||++||+|.||||||||+|++.++..|. +|+|.+||.++
T Consensus 2 I~l~~vsK~~~~~---------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt--sG~v~v~G~di 70 (339)
T COG1135 2 IELENVSKTFGQT---------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT--SGSVFVDGQDL 70 (339)
T ss_pred eEEEeeeeeeccC---------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC--CceEEEcCEec
Confidence 6788998877532 012357999999999999999999999999999999999998874 99999999875
Q ss_pred cc------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQ------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
.. +..|+.+|+++|+..++...||.||+.|...+.. .++++.++++.++++.+||.+..+... .+|
T Consensus 71 ~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP-----~qL 142 (339)
T COG1135 71 TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYP-----AQL 142 (339)
T ss_pred ccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCc-----hhc
Confidence 32 3457889999999999999999999999887653 457788899999999999998877663 589
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
||||||||+|||||+.+|+||++|||||+|||.+.+.|+++|+++.++ |.||+++||+++ -+-+.|||+.+|. +|++
T Consensus 143 SGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~-~G~l 220 (339)
T COG1135 143 SGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLD-QGRL 220 (339)
T ss_pred CcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEee-CCEE
Confidence 999999999999999999999999999999999999999999999765 999999999874 3556789999997 6999
Q ss_pred EEEcCCCC
Q 000937 850 IYSGPLGN 857 (1218)
Q Consensus 850 ~~~g~~~~ 857 (1218)
++.|+..+
T Consensus 221 vE~G~v~~ 228 (339)
T COG1135 221 VEEGTVSE 228 (339)
T ss_pred EEeccHHH
Confidence 99998753
No 47
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-43 Score=371.92 Aligned_cols=203 Identities=23% Similarity=0.384 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+.++++++.+. ...+|+|+|++|++||+++|+||||||||||||+|+|+.+|. +|+|.++|.+
T Consensus 3 ~l~i~~v~~~f~--------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~--~G~V~~~g~~ 66 (248)
T COG1116 3 LLEIEGVSKSFG--------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT--SGEVLLDGRP 66 (248)
T ss_pred eEEEEeeEEEeC--------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCcc
Confidence 467888888874 257999999999999999999999999999999999998874 8999999998
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
.. .....++||+|++.++|.+||+||+.++...+. .+++++.+++++.++.+||.+..|... ++||||||
T Consensus 67 v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMr 136 (248)
T COG1116 67 VT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMR 136 (248)
T ss_pred cC--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHH
Confidence 73 234568999999999999999999999876653 345566678999999999999998873 58999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
|||+|||||+.+|++|+||||+++||+.++..+.+.|.++.++ ++||+++|||.+ |...+.||+++|.+
T Consensus 137 QRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~ 206 (248)
T COG1116 137 QRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSN 206 (248)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecC
Confidence 9999999999999999999999999999999999999998654 899999999986 77789999999984
No 48
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.5e-43 Score=379.22 Aligned_cols=219 Identities=26% Similarity=0.422 Sum_probs=190.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.+|+++.|+ ++.+|+|+|+++++||+++|+||||||||||||+|+|..+|. +|+|.++|++
T Consensus 2 ~L~~~~ls~~y~--------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~--~G~V~l~g~~ 65 (258)
T COG1120 2 MLEVENLSFGYG--------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK--SGEVLLDGKD 65 (258)
T ss_pred eeEEEEEEEEEC--------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC--CCEEEECCCc
Confidence 368899999984 468999999999999999999999999999999999988874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCC-CCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP-QINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+.. ....|.++||||.....+.+||+|.+.++..-.... ....++..+.++++++.+++.+.+++.+ .+||
T Consensus 66 i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LS 140 (258)
T COG1120 66 IASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELS 140 (258)
T ss_pred hhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccC
Confidence 643 346688999999998889999999998874321111 1123445567899999999999999886 4899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||||||.|||||+++|++|+||||||.||...+.+++++++++++ +|+|||+++||++ -...+||++++|. +|+++
T Consensus 141 GGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk-~G~i~ 218 (258)
T COG1120 141 GGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLK-DGKIV 218 (258)
T ss_pred hhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCeEE
Confidence 9999999999999999999999999999999999999999999985 4999999999997 4678999999998 69999
Q ss_pred EEcCCCC
Q 000937 851 YSGPLGN 857 (1218)
Q Consensus 851 ~~g~~~~ 857 (1218)
..|++.+
T Consensus 219 a~G~p~e 225 (258)
T COG1120 219 AQGTPEE 225 (258)
T ss_pred eecCcch
Confidence 9999865
No 49
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-43 Score=374.26 Aligned_cols=220 Identities=26% Similarity=0.447 Sum_probs=188.3
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.+. ++ ++|+|||+++++||+++|+||||||||||+|+|.|+.+| .+|+|.++|+
T Consensus 3 ~~i~v~nl~v~y~-------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p--~~G~i~~~g~ 66 (254)
T COG1121 3 PMIEVENLTVSYG-------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGK 66 (254)
T ss_pred cEEEEeeeEEEEC-------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CcceEEEccc
Confidence 3589999999984 12 699999999999999999999999999999999998887 4899999998
Q ss_pred eCccccccceEEEeccCCCC--CCCCCHHHHHHHHHhhccCC-CCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 695 PKIQETFVRVSGYCEQTDIH--SPHITIEESLFFSAWLRLAP-QINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 695 ~~~~~~~~~~~~~v~q~~~~--~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+......+..+|||||...+ -..+||+|.+..+...+... ....++.++.++++++.+|+.+..|+.+| +||
T Consensus 67 ~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LS 141 (254)
T COG1121 67 PVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELS 141 (254)
T ss_pred cccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccC
Confidence 86554445679999996432 23489999998864332210 11233446789999999999999999876 799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||+|||.|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.||++++|. +++++
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~ 218 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIA 218 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEe
Confidence 99999999999999999999999999999999999999999999988999999999997 6889999999995 68999
Q ss_pred EcCCCCC
Q 000937 852 SGPLGNH 858 (1218)
Q Consensus 852 ~g~~~~~ 858 (1218)
.|++++.
T Consensus 219 ~G~~~~~ 225 (254)
T COG1121 219 SGPPEEV 225 (254)
T ss_pred ccChhhc
Confidence 9998753
No 50
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.1e-43 Score=394.62 Aligned_cols=215 Identities=31% Similarity=0.473 Sum_probs=190.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+.++|++..+. .++.+|+||||++++||++||+||||||||||+|+|+|+..| .+|+|.++|.+
T Consensus 4 ~i~~~~l~k~~~-------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~ 68 (293)
T COG1131 4 VIEVRNLTKKYG-------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYD 68 (293)
T ss_pred eeeecceEEEeC-------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEe
Confidence 367788888773 136899999999999999999999999999999999999887 48999999988
Q ss_pred Ccc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 696 KIQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
... ...++.+||++|++.+++.+||+|+|.|.+.++.... ....++++++++.++|.+..++++ ++||+|
T Consensus 69 ~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G 140 (293)
T COG1131 69 VVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGG 140 (293)
T ss_pred CccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHH
Confidence 654 3567789999999999999999999999998875432 345678999999999998555554 589999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTG-RTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
||||++||+||+++|+++||||||+||||.++..+.+.|++++++| +||+++||+++ ++...||+++++. +|++++.
T Consensus 141 ~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~-~G~~~~~ 218 (293)
T COG1131 141 MKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILN-DGKIIAE 218 (293)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEe-CCEEEEe
Confidence 9999999999999999999999999999999999999999999987 89999999986 7788899999998 6999999
Q ss_pred cCC
Q 000937 853 GPL 855 (1218)
Q Consensus 853 g~~ 855 (1218)
|++
T Consensus 219 g~~ 221 (293)
T COG1131 219 GTP 221 (293)
T ss_pred CCH
Confidence 976
No 51
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-43 Score=361.60 Aligned_cols=223 Identities=28% Similarity=0.385 Sum_probs=190.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++..++ +++++|+|||++|++||+++|+|||||||||||++|+|+.++ .+|+|.+||.+
T Consensus 3 ~i~~~nl~k~yp-------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~--t~G~i~~~g~~ 67 (258)
T COG3638 3 MIEVKNLSKTYP-------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP--TSGEILFNGVQ 67 (258)
T ss_pred eEEEeeeeeecC-------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC--CcceEEecccc
Confidence 578999998885 356899999999999999999999999999999999998877 48999999977
Q ss_pred Ccc------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-----CCCChhhHHHHHHHHHHHcCCCccccccccC
Q 000937 696 KIQ------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-----PQINSKTKADCVNHVLKTIELDGIKESLVGI 764 (1218)
Q Consensus 696 ~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 764 (1218)
+.. +.+++.+||++|+..+.+.++|.+|+..+..-+.+ -....++.+..+-+.++.+|+.+.+-.+.+
T Consensus 68 i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~- 146 (258)
T COG3638 68 ITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS- 146 (258)
T ss_pred hhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc-
Confidence 532 24578899999999999999999999876432211 112334555667788999999988777654
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEE
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+|||||+|||+|||+|+.+|++++.|||+++|||.+++++++.|+++.++ |.|||++.||.+. ..++|||++-|
T Consensus 147 ----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl 221 (258)
T COG3638 147 ----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGL 221 (258)
T ss_pred ----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEe
Confidence 79999999999999999999999999999999999999999999999754 9999999999864 56789999999
Q ss_pred ecCCEEEEEcCCCCCch
Q 000937 844 KTGGRIIYSGPLGNHSS 860 (1218)
Q Consensus 844 ~~~G~~~~~g~~~~~~~ 860 (1218)
+ +|+++|+||+++..+
T Consensus 222 ~-~G~ivfDg~~~el~~ 237 (258)
T COG3638 222 K-AGRIVFDGPASELTD 237 (258)
T ss_pred c-CCcEEEeCChhhhhH
Confidence 8 699999999976443
No 52
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.1e-42 Score=365.26 Aligned_cols=209 Identities=27% Similarity=0.419 Sum_probs=177.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++.+|++..+.... ...++|+++|++|++||+++|+|||||||||||++|.|+..| ++|.|.++|.+.
T Consensus 2 i~~~~v~k~y~~~~----------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~ 69 (226)
T COG1136 2 IELKNVSKIYGLGG----------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDL 69 (226)
T ss_pred cEEeeeEEEeccCC----------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEc
Confidence 35778887764321 225799999999999999999999999999999999999887 489999999875
Q ss_pred cc------cc-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcccc-ccccCCCCC
Q 000937 697 IQ------ET-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE-SLVGIPGVS 768 (1218)
Q Consensus 697 ~~------~~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~~ 768 (1218)
.. .. .++.+|||+|+..+.|++||.||+.++..+... .....+++++++++.+||.+..+ +. +.
T Consensus 70 ~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~ 141 (226)
T COG1136 70 TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PS 141 (226)
T ss_pred CcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----ch
Confidence 42 12 245799999999999999999999987755432 12245677889999999986665 44 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
+|||||||||+|||||+.+|++++.||||.+||+.++..|++++++++++ |+|||++|||+ ++...+||++.+. +|
T Consensus 142 eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~-dG 218 (226)
T COG1136 142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELK-DG 218 (226)
T ss_pred hcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEe-CC
Confidence 89999999999999999999999999999999999999999999999866 99999999986 6789999999998 57
Q ss_pred E
Q 000937 848 R 848 (1218)
Q Consensus 848 ~ 848 (1218)
+
T Consensus 219 ~ 219 (226)
T COG1136 219 K 219 (226)
T ss_pred e
Confidence 7
No 53
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-43 Score=350.19 Aligned_cols=203 Identities=27% Similarity=0.417 Sum_probs=185.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc--ccccceEEEeccCCCCCCCCCH
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ--ETFVRVSGYCEQTDIHSPHITI 720 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv 720 (1218)
.++++||||+++.||+++|+|||||||||+|++|+++..|+ +|.|++||.+..+ ...++.+|.++.+..++..||+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~--~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC--CceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 46899999999999999999999999999999999998874 8999999998543 3467889999988899999999
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000937 721 EESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGL 800 (1218)
Q Consensus 721 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgL 800 (1218)
+|||.|.+++.. ....+.+++.+++.+.++|.++.|+.+| ++|.||||||+|||||+++|++++||||||||
T Consensus 93 rEnl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 999999988763 4456677889999999999999999986 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 801 DARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 801 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
|..+...+.+.+++++++|++||++||.+. |+..+||+++++. .|++++.|++++
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh-~Gevv~~gs~~~ 219 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLH-KGEVVLEGSIEA 219 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEe-cCcEEEcCCHHH
Confidence 999999999999999999999999999985 7778999999998 599999998753
No 54
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-42 Score=386.09 Aligned_cols=216 Identities=26% Similarity=0.411 Sum_probs=195.6
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++..+.. ..+|+|+|++|++||+++|+||||||||||||+|||+.+++ +|+|.++|.+
T Consensus 3 ~i~l~~v~K~yg~--------------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~--~G~I~i~g~~ 66 (338)
T COG3839 3 ELELKNVRKSFGS--------------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT--SGEILIDGRD 66 (338)
T ss_pred EEEEeeeEEEcCC--------------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEE
Confidence 5788999988741 12999999999999999999999999999999999999874 8999999999
Q ss_pred Ccc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 696 KIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
++. ...+|.+++|+|+..++|+|||+||+.|+.+.+. ..+++.+++++++.+.|+|.+..|++. ++|||||
T Consensus 67 vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQ 138 (338)
T COG3839 67 VTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQ 138 (338)
T ss_pred CCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhh
Confidence 765 4456889999999999999999999999987653 346677889999999999999999874 5899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||+|||||+++|++++||||+|+||...+..+...|+++.++ |.|+|++|||.. |...++|++++|. +|++...|
T Consensus 139 rQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g 216 (338)
T COG3839 139 RQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVG 216 (338)
T ss_pred HHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecC
Confidence 99999999999999999999999999999999999999999876 999999999974 8889999999998 69999999
Q ss_pred CCCC
Q 000937 854 PLGN 857 (1218)
Q Consensus 854 ~~~~ 857 (1218)
++.+
T Consensus 217 ~p~e 220 (338)
T COG3839 217 TPLE 220 (338)
T ss_pred ChHH
Confidence 9865
No 55
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-43 Score=369.07 Aligned_cols=206 Identities=30% Similarity=0.497 Sum_probs=184.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE---eCcc-ccccceEEEeccCCCCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY---PKIQ-ETFVRVSGYCEQTDIHSPH 717 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~~v~q~~~~~~~ 717 (1218)
...+++|||++|+.||++||+|||||||||||++|+|+..|+ .|.|.+||+ +.++ ....|.+|||+|+..+|++
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~--~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC--CceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 357899999999999999999999999999999999999884 899999999 5443 2345789999999999999
Q ss_pred CCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000937 718 ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPT 797 (1218)
Q Consensus 718 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPt 797 (1218)
|||.||+.|+...+. ...+..+.+.+++++++.+.|+++.+.. +.+|||||||||++||||+.+|++|+||||+
T Consensus 92 mtVa~NIAFGl~~~~-~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVRK-ERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred chHHhhhhhcccccc-cCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 999999999987762 2233556678899999999999998876 3589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 798 TGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 798 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
++||...+.++.+-|+++.++ |.|++++|||+. |..+.+|++++|. +|+|...|++++
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~-~G~Ieqvg~p~e 224 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLN-QGRIEQVGPPDE 224 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEec-CCeeeeeCCHHH
Confidence 999999999999999999877 999999999986 8999999999998 599999999865
No 56
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-42 Score=386.08 Aligned_cols=218 Identities=26% Similarity=0.435 Sum_probs=195.4
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|++..+. ...+++|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|+
T Consensus 4 ~~l~i~~v~k~yg--------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~--~G~I~l~G~ 67 (352)
T COG3842 4 PALEIRNVSKSFG--------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS--SGEILLDGE 67 (352)
T ss_pred ceEEEEeeeeecC--------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCE
Confidence 4588999998873 468999999999999999999999999999999999999884 899999999
Q ss_pred eCcc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 695 PKIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 695 ~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
++.. ...+|.+|+|+|+-.+||+|||+||+.|+.+++ ....+++.+++++++++.++|.+..++.. .+||||
T Consensus 68 ~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGG 140 (352)
T COG3842 68 DITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGG 140 (352)
T ss_pred ECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChH
Confidence 9765 345788999999999999999999999998743 22334567789999999999999888774 589999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||+|||||+.+|++|+||||.|+||..-+.++...|+++.++ |.|.|++|||.. |.+.+.|++++|. +|++...
T Consensus 141 QqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~-~G~I~Q~ 218 (352)
T COG3842 141 QQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMN-DGRIEQV 218 (352)
T ss_pred HHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEcc-CCceeec
Confidence 999999999999999999999999999999999999999999765 999999999975 7889999999998 6999999
Q ss_pred cCCCC
Q 000937 853 GPLGN 857 (1218)
Q Consensus 853 g~~~~ 857 (1218)
|++++
T Consensus 219 gtP~e 223 (352)
T COG3842 219 GTPEE 223 (352)
T ss_pred CCHHH
Confidence 99864
No 57
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=7.4e-42 Score=337.19 Aligned_cols=212 Identities=25% Similarity=0.362 Sum_probs=183.7
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++|+|++..|+ ..+++|+|||++|++||++-|+||||||||||||+|.+...| ++|+|.+||.++
T Consensus 2 I~f~~V~k~Y~-------------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p--t~G~i~~~~~dl 66 (223)
T COG2884 2 IRFENVSKAYP-------------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP--TRGKILVNGHDL 66 (223)
T ss_pred eeehhhhhhcC-------------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC--CCceEEECCeec
Confidence 57888887774 236799999999999999999999999999999999998877 489999999986
Q ss_pred cc------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQ------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
.. ...+|.+|.|+||..++++.||.||+.|+..... .+..+.++++.++++..||.+..+.. +.+|
T Consensus 67 ~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~L 138 (223)
T COG2884 67 SRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQL 138 (223)
T ss_pred ccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----cccc
Confidence 43 1357889999999999999999999999876543 34566778899999999999887766 3589
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhc-eEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFD-ELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d-~~~~l~~~G~~ 849 (1218)
||||||||+||||++.+|++|+.||||.+|||..+.+|++++.++.+.|.||+++|||. ++.+... +++.+. +|++
T Consensus 139 SGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~--~lv~~~~~rvl~l~-~Grl 215 (223)
T COG2884 139 SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL--ELVNRMRHRVLALE-DGRL 215 (223)
T ss_pred CchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH--HHHHhccCcEEEEe-CCEE
Confidence 99999999999999999999999999999999999999999999998999999999974 5666665 555565 7999
Q ss_pred EEEcC
Q 000937 850 IYSGP 854 (1218)
Q Consensus 850 ~~~g~ 854 (1218)
+....
T Consensus 216 ~~d~~ 220 (223)
T COG2884 216 VRDES 220 (223)
T ss_pred Eeccc
Confidence 87654
No 58
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=5.8e-40 Score=390.33 Aligned_cols=191 Identities=26% Similarity=0.352 Sum_probs=154.0
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
+..++++|+++.++ +++.+++++|+.+++|+.+||+||||+|||||||+|+|...+. +|+|.+.-
T Consensus 319 ~~vl~~~~~~~~y~-------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~--~G~v~~g~ 383 (530)
T COG0488 319 KLVLEFENVSKGYD-------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL--SGTVKVGE 383 (530)
T ss_pred CeeEEEeccccccC-------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC--CceEEeCC
Confidence 45689999998874 2357999999999999999999999999999999999977663 89997743
Q ss_pred EeCccccccceEEEeccCC-CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-ccccccCCCCCCCC
Q 000937 694 YPKIQETFVRVSGYCEQTD-IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGIPGVSGLS 771 (1218)
Q Consensus 694 ~~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LS 771 (1218)
. -.+||..|+. .+.++.|+.|++.-.. +. .....+...+..+++..- ..+. ++.||
T Consensus 384 ~--------v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~----~~e~~~r~~L~~f~F~~~~~~~~-----v~~LS 441 (530)
T COG0488 384 T--------VKIGYFDQHRDELDPDKTVLEELSEGF-----PD----GDEQEVRAYLGRFGFTGEDQEKP-----VGVLS 441 (530)
T ss_pred c--------eEEEEEEehhhhcCccCcHHHHHHhhC-----cc----ccHHHHHHHHHHcCCChHHHhCc-----hhhcC
Confidence 1 2489999986 3457889999885421 11 114557788999988743 2344 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
||||.|+.+|+.++.+|.+|+|||||+.||..+...+.+.|... .-|||++|||.. -+-..+++++.+.+
T Consensus 442 GGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~ 511 (530)
T COG0488 442 GGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED 511 (530)
T ss_pred HhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC
Confidence 99999999999999999999999999999999999999999875 459999999964 35556788888863
No 59
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-41 Score=340.51 Aligned_cols=219 Identities=26% Similarity=0.334 Sum_probs=185.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC---CCceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT---SGCFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~---~~~~~G~i~~ 691 (1218)
..++.+||++.+. .+++|+|||+.|++++++|++|||||||||||+++....+ .-..+|+|.+
T Consensus 6 ~~~~~~~l~~yYg--------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~ 71 (253)
T COG1117 6 PAIEVRDLNLYYG--------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLL 71 (253)
T ss_pred ceeEecceeEEEC--------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEE
Confidence 4578899999884 4689999999999999999999999999999999998543 2357899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCC
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIP 765 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 765 (1218)
+|+++.. ...|+.+|.|+|.+..|| +|++||+.|+.++.... .++.++.++..++...|. ++.|++-.++
T Consensus 72 ~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~---~~~ldeiVe~sLk~AaLWdEVKDrL~~sa 147 (253)
T COG1117 72 DGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK---DKELDEIVESSLKKAALWDEVKDRLHKSA 147 (253)
T ss_pred CCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccc---hHHHHHHHHHHHHHhHhHHHhHHHhhCCc
Confidence 9998643 246788999999999999 99999999998765432 255677888888888875 4555553332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
.+|||||+||++|||+|+.+|+||+||||||+|||.+..+|-+++.+|+ +.-|||++||.+. ...+..|+...+.
T Consensus 148 --~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~- 222 (253)
T COG1117 148 --LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFY- 222 (253)
T ss_pred --cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhc-
Confidence 4799999999999999999999999999999999999999999999997 4689999999875 5667789988887
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
.|+++++|+.+
T Consensus 223 ~G~LvE~g~T~ 233 (253)
T COG1117 223 LGELVEFGPTD 233 (253)
T ss_pred ccEEEEEcCHH
Confidence 59999999864
No 60
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.3e-39 Score=363.14 Aligned_cols=437 Identities=19% Similarity=0.299 Sum_probs=334.0
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc----cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP----QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~----~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|+|.+|||||||.+...|. .+|+|.+||.+++-.+. +.-+|.|-||..++|++||.||+..+.+-....
T Consensus 35 LLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~---- 110 (501)
T COG3845 35 LLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGG---- 110 (501)
T ss_pred EeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccccc----
Confidence 7899999999999999994 57999999999885443 335789999999999999999999976532100
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
.+.+++. ...++.+.+..||+---|-+|++ ||-||||||-|-++|..+
T Consensus 111 ---~~~~~~~------------------------~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 111 ---LIDRRQA------------------------RARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEILKALYRG 158 (501)
T ss_pred ---ccCHHHH------------------------HHHHHHHHHHhCCCCCccceeec-----CCcchhHHHHHHHHHhcC
Confidence 0011111 11357788899999999999886 999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCC
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCG 236 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG 236 (1218)
+ ++|+||||||-|-+..+.+++++|+++++ .|+|||..-| --.|+.+.+|++.||.+||++-.-++.
T Consensus 159 a-~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITH-KL~Ev~~iaDrvTVLR~Gkvvgt~~~~---------- 225 (501)
T COG3845 159 A-RLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITH-KLKEVMAIADRVTVLRRGKVVGTVDPV---------- 225 (501)
T ss_pred C-CEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEec-cHHHHHHhhCeeEEEeCCeEEeeecCC----------
Confidence 7 89999999999999999999999999986 6888887655 677999999999999999985442210
Q ss_pred CCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCccccccccccHHHHHHH
Q 000937 237 FRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFKA 316 (1218)
Q Consensus 237 ~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~ 316 (1218)
.. .+.+++++
T Consensus 226 ----~~----------------------~t~~ela~-------------------------------------------- 235 (501)
T COG3845 226 ----AE----------------------TTEEELAE-------------------------------------------- 235 (501)
T ss_pred ----CC----------------------CCHHHHHH--------------------------------------------
Confidence 00 00000000
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhhhhccceeee
Q 000937 317 CMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSLERLAVFYK 396 (1218)
Q Consensus 317 l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~~~r~v~~r 396 (1218)
+
T Consensus 236 l------------------------------------------------------------------------------- 236 (501)
T COG3845 236 L------------------------------------------------------------------------------- 236 (501)
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHhhhHHHHHHhcccchhhhhh
Q 000937 397 QKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCFQ 476 (1218)
Q Consensus 397 e~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1218)
|+
T Consensus 237 -------------------------------------Mv----------------------------------------- 238 (501)
T COG3845 237 -------------------------------------MV----------------------------------------- 238 (501)
T ss_pred -------------------------------------hc-----------------------------------------
Confidence 00
Q ss_pred HhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccccCCCcccHHHhhhccCcccCCcchhHHHHHHHHHHHHHHHH
Q 000937 477 LEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNFA 556 (1218)
Q Consensus 477 ~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~ 556 (1218)
|.++.
T Consensus 239 ----------------------------------------------G~~v~----------------------------- 243 (501)
T COG3845 239 ----------------------------------------------GREVV----------------------------- 243 (501)
T ss_pred ----------------------------------------------CCccc-----------------------------
Confidence 00000
Q ss_pred HHHHHhccCCCCCCCcccccCCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhhc
Q 000937 557 FALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRE 636 (1218)
Q Consensus 557 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 636 (1218)
... ... ... | .+..++++||+..-+.
T Consensus 244 --------------~~~---------------~~~----------~~~------p-g~~vL~V~~L~v~~~~-------- 269 (501)
T COG3845 244 --------------LRV---------------VKP----------PST------P-GEVVLEVEDLSVKDRR-------- 269 (501)
T ss_pred --------------ccc---------------ccC----------CCC------C-CCeEEEEeeeEeecCC--------
Confidence 000 000 000 0 1346788888865421
Q ss_pred cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC----cccc-ccceEEEeccC
Q 000937 637 CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK----IQET-FVRVSGYCEQT 711 (1218)
Q Consensus 637 ~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~----~~~~-~~~~~~~v~q~ 711 (1218)
....+++|||++++||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|++. +... .+..++|||.+
T Consensus 270 -----~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~--~G~I~l~G~~v~~~~~~~~~r~~G~~~VPed 342 (501)
T COG3845 270 -----GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA--SGRILLNGKDVLGRLSPRERRRLGLAYVPED 342 (501)
T ss_pred -----CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC--CceEEECCEeccccCCHHHHHhcCCccCChh
Confidence 246799999999999999999999999999999999988663 69999999986 2222 33568999997
Q ss_pred C---CCCCCCCHHHHHHHHHhhccC----CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000937 712 D---IHSPHITIEESLFFSAWLRLA----PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVEL 784 (1218)
Q Consensus 712 ~---~~~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L 784 (1218)
. -+.+.+|+.||+.+...-+.+ .-....+..+..+++++.++........ ..+.||||++||+-+||+|
T Consensus 343 R~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~----~a~~LSGGNqQK~IlaREl 418 (501)
T COG3845 343 RHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA----PARSLSGGNQQKLILAREL 418 (501)
T ss_pred hccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc----chhhcCCcceehhhhhhhh
Confidence 5 356899999999876542211 1123455667788999999886322111 1468999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCC
Q 000937 785 VANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNH 858 (1218)
Q Consensus 785 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 858 (1218)
..+|++|+..+||.|||..+.+.|.+.|.+++++|+.|++++-+++ |+++++|++.+|. +|+++...++++.
T Consensus 419 ~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~-~Gri~~~~~~~~~ 490 (501)
T COG3845 419 ARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIY-EGRIVGIVPPEEA 490 (501)
T ss_pred ccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeee-CCceecccccccC
Confidence 9999999999999999999999999999999999999999999997 8999999999998 5999988887653
No 61
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2e-40 Score=376.84 Aligned_cols=216 Identities=26% Similarity=0.391 Sum_probs=188.5
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|+.+|. +|+|.++|.
T Consensus 6 ~~i~i~~l~k~~~--------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~--~G~v~i~G~ 69 (306)
T PRK13537 6 APIDFRNVEKRYG--------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGE 69 (306)
T ss_pred ceEEEEeEEEEEC--------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCE
Confidence 3588999999883 247999999999999999999999999999999999998874 899999999
Q ss_pred eCcc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 695 PKIQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 695 ~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
+... ...++.+||++|++.+++.+||+||+.|.+.++. ....+..++++++++.+++.+..++.+ ++|||
T Consensus 70 ~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 141 (306)
T PRK13537 70 PVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSG 141 (306)
T ss_pred ecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCH
Confidence 8643 2345779999999999999999999998665431 223334556788999999988888775 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||++||+||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|. +|++++.
T Consensus 142 G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~-~G~i~~~ 219 (306)
T PRK13537 142 GMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIE-EGRKIAE 219 (306)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEE
Confidence 9999999999999999999999999999999999999999999878999999999986 6778899999998 5999999
Q ss_pred cCCC
Q 000937 853 GPLG 856 (1218)
Q Consensus 853 g~~~ 856 (1218)
|+++
T Consensus 220 g~~~ 223 (306)
T PRK13537 220 GAPH 223 (306)
T ss_pred CCHH
Confidence 9864
No 62
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.4e-41 Score=326.85 Aligned_cols=197 Identities=28% Similarity=0.395 Sum_probs=174.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc-ccccceEEEeccCCCCCCCCCHHHHHHH
Q 000937 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-ETFVRVSGYCEQTDIHSPHITIEESLFF 726 (1218)
Q Consensus 648 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 726 (1218)
..+++|++||++||+||||||||||||+|+|...|. +|+|.+||++... ....|-++.++|+..+|.++||.+|+.+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~--~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC--CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 467889999999999999999999999999998874 8999999998654 3456778999999999999999999988
Q ss_pred HHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 000937 727 SAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAA 806 (1218)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~ 806 (1218)
+..-. -.-..+.+++++.++...||.++.+++.+ +|||||||||++||+|+++-+|++||||+|+|||.-+.
T Consensus 95 Gl~P~---LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPG---LKLNAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCcc---cccCHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 64321 11234566789999999999999988854 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 807 IVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 807 ~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
++..++.+++++ +.|++++||+|+ +.....|++++++ +||+.++|+.+
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~-~Gri~~~g~~~ 215 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLD-NGRIAAQGSTQ 215 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEe-CCEEEeeccHH
Confidence 999999999865 899999999997 7889999999998 59999999863
No 63
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.9e-42 Score=339.16 Aligned_cols=206 Identities=23% Similarity=0.396 Sum_probs=183.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcccc----ccceEEEeccCCCCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQET----FVRVSGYCEQTDIHSPH 717 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ 717 (1218)
++++++|||+++++||+++|+|||||||||.+.++.|+.+++ +|+|.+||.+++... .+..+||+||+...|..
T Consensus 16 kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d--~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~ 93 (243)
T COG1137 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD--SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRK 93 (243)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC--CceEEECCcccccCChHHHhhcCcccccccchHhhc
Confidence 568999999999999999999999999999999999998885 899999999876532 23458999999999999
Q ss_pred CCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000937 718 ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPT 797 (1218)
Q Consensus 718 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPt 797 (1218)
+||+||+.-....+.. +....+++++.+++++.+++.++++.+- ..||||||||+.|||||+.+|+.++||||+
T Consensus 94 LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEPF 167 (243)
T COG1137 94 LTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEPF 167 (243)
T ss_pred CcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999999877665531 1223455667889999999999998874 379999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 798 TGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 798 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
+|.||.+..+|.++++.|+++|..|++|-|+.. |....|||.+++. +|++.++|++++
T Consensus 168 AGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~-~G~vla~G~p~e 225 (243)
T COG1137 168 AGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIIS-DGKVLAEGSPEE 225 (243)
T ss_pred cCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEe-cCeEEecCCHHH
Confidence 999999999999999999999999999999986 7899999999998 599999999864
No 64
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.5e-36 Score=401.33 Aligned_cols=218 Identities=23% Similarity=0.347 Sum_probs=188.5
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
...++++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|
T Consensus 926 ~~~L~I~nLsK~y~~------------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt--sG~I~i~G 991 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP------------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT--SGTVLVGG 991 (2272)
T ss_pred CceEEEEeEEEEecC------------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC--ceEEEECC
Confidence 357899999998841 1357999999999999999999999999999999999998774 89999999
Q ss_pred EeCcc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 694 YPKIQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 694 ~~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+++.. ...++.+||++|++.+++.+||+||+.+.++++. ...++.+++++++++.+||.+..++.+ ++||
T Consensus 992 ~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LS 1063 (2272)
T TIGR01257 992 KDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLS 1063 (2272)
T ss_pred EECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 98643 2345679999999999999999999999876542 223344567889999999988877765 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||||+||+||+.+|++++|||||+|||+.+++.++++|++++ +|+|||++||+++ ++...+|++++|. +|+++.
T Consensus 1064 GGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~-~GkL~~ 1140 (2272)
T TIGR01257 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIIS-QGRLYC 1140 (2272)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 999999999999999999999999999999999999999999995 5999999999985 5667899999998 599999
Q ss_pred EcCCC
Q 000937 852 SGPLG 856 (1218)
Q Consensus 852 ~g~~~ 856 (1218)
.|++.
T Consensus 1141 ~Gs~~ 1145 (2272)
T TIGR01257 1141 SGTPL 1145 (2272)
T ss_pred ecCHH
Confidence 99864
No 65
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=9e-40 Score=373.80 Aligned_cols=218 Identities=22% Similarity=0.301 Sum_probs=187.2
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++.. ++.+++|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 2 I~~~~lsk~y~~~----------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~--~G~I~i~G~~i 69 (343)
T TIGR02314 2 IKLSNITKVFHQG----------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT--SGSVIVDGQDL 69 (343)
T ss_pred EEEEEEEEEECCC----------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEC
Confidence 6789999988421 11247999999999999999999999999999999999998874 89999999986
Q ss_pred ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
... ..++.+||++|+..+++.+||+||+.+..... .....+..+++.++++.+||.+..|... .+|
T Consensus 70 ~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~L 141 (343)
T TIGR02314 70 TTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNL 141 (343)
T ss_pred CcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 431 23567999999999999999999999876432 1234455667889999999988877664 489
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
||||||||+|||||+.+|++|+|||||++||+.++..++++|++++++ |.|||++||+++ .+.+.||++++|. +|++
T Consensus 142 SgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~i 219 (343)
T TIGR02314 142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGEL 219 (343)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999875 999999999975 5667899999997 6999
Q ss_pred EEEcCCC
Q 000937 850 IYSGPLG 856 (1218)
Q Consensus 850 ~~~g~~~ 856 (1218)
+..|++.
T Consensus 220 v~~g~~~ 226 (343)
T TIGR02314 220 IEQGTVS 226 (343)
T ss_pred EEEcCHH
Confidence 9999864
No 66
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-40 Score=377.67 Aligned_cols=217 Identities=24% Similarity=0.359 Sum_probs=189.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|++
T Consensus 3 ~l~i~~l~~~~~-------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~ 67 (356)
T PRK11650 3 GLKLQAVRKSYD-------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRV 67 (356)
T ss_pred EEEEEeEEEEeC-------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEE
Confidence 378899998873 124699999999999999999999999999999999999887 48999999998
Q ss_pred Ccc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 696 KIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
+.. ...++.+|||+|+..++|++||+||+.|+...+ .....+..++++++++.++|.+..++.. ++|||||
T Consensus 68 i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 139 (356)
T PRK11650 68 VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQ 139 (356)
T ss_pred CCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHH
Confidence 643 223477999999999999999999999986532 1234445567899999999998887764 4899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|++|||++ ++.+++|++++|. +|+++..|
T Consensus 140 ~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g 217 (356)
T PRK11650 140 RQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIG 217 (356)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEEC
Confidence 99999999999999999999999999999999999999999876 999999999985 6888999999997 69999999
Q ss_pred CCCC
Q 000937 854 PLGN 857 (1218)
Q Consensus 854 ~~~~ 857 (1218)
++++
T Consensus 218 ~~~~ 221 (356)
T PRK11650 218 TPVE 221 (356)
T ss_pred CHHH
Confidence 8753
No 67
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1e-39 Score=376.29 Aligned_cols=216 Identities=23% Similarity=0.388 Sum_probs=190.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|. +|+|.++|++
T Consensus 4 ~l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~--~G~I~i~g~~ 67 (353)
T TIGR03265 4 YLSIDNIRKRFG--------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT--AGTIYQGGRD 67 (353)
T ss_pred EEEEEEEEEEeC--------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC--ceEEEECCEE
Confidence 478999998873 246899999999999999999999999999999999998874 8999999998
Q ss_pred Ccc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 696 KIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
... ...+|.+|||+|+..++|++||+||+.|+...+ .....+..++++++++.++|.+..++.. ++|||||
T Consensus 68 ~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq 139 (353)
T TIGR03265 68 ITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQ 139 (353)
T ss_pred CCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHH
Confidence 643 234577999999999999999999999986533 1234455678899999999998888764 5899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||+|||||+.+|++++|||||++||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|
T Consensus 140 ~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~-~G~i~~~g 217 (353)
T TIGR03265 140 QQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMN-HGVIEQVG 217 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999765 999999999985 6788999999998 59999999
Q ss_pred CCCC
Q 000937 854 PLGN 857 (1218)
Q Consensus 854 ~~~~ 857 (1218)
++++
T Consensus 218 ~~~~ 221 (353)
T TIGR03265 218 TPQE 221 (353)
T ss_pred CHHH
Confidence 8753
No 68
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-39 Score=359.23 Aligned_cols=213 Identities=24% Similarity=0.376 Sum_probs=181.1
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+|+|+|..+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 65 (235)
T cd03261 2 ELRGLTKSFG--------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDIS 65 (235)
T ss_pred eEEEEEEEEC--------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 5788888773 24699999999999999999999999999999999999876 4899999998753
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 698 Q------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 698 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
. ...++.++|++|++.+++.+||+||+.+...... .....+..++++++++.+++.+..++.+ .+||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELS 138 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 2 1245679999999999999999999988643221 1223344566788999999987766654 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~-~G~i~ 216 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLY-DGKIV 216 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEE-CCeEE
Confidence 99999999999999999999999999999999999999999999874 899999999985 5677899999997 59999
Q ss_pred EEcCC
Q 000937 851 YSGPL 855 (1218)
Q Consensus 851 ~~g~~ 855 (1218)
+.|++
T Consensus 217 ~~g~~ 221 (235)
T cd03261 217 AEGTP 221 (235)
T ss_pred EecCH
Confidence 99875
No 69
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-39 Score=374.71 Aligned_cols=216 Identities=22% Similarity=0.407 Sum_probs=190.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++
T Consensus 6 ~l~~~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~~~g~~ 69 (351)
T PRK11432 6 FVVLKNITKRFG--------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT--EGQIFIDGED 69 (351)
T ss_pred EEEEEeEEEEEC--------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC--ceEEEECCEE
Confidence 578999999873 246899999999999999999999999999999999998874 8999999998
Q ss_pred Cccc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 696 KIQE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
+... ..++.+|||+|+..++|++||+||+.|+...+. ....+..++++++++.+++.+..++.. .+|||||
T Consensus 70 i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq 141 (351)
T PRK11432 70 VTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQ 141 (351)
T ss_pred CCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHH
Confidence 6532 235779999999999999999999999865432 234455678899999999998877664 5899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||+|||||+.+|++|+|||||+|||+..+..+.+.|+++.++ |+|+|++|||++ ++..++|++++|. +|+++..|
T Consensus 142 ~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~-~G~i~~~g 219 (351)
T PRK11432 142 QQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMN-KGKIMQIG 219 (351)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999765 999999999985 6788999999998 59999999
Q ss_pred CCCC
Q 000937 854 PLGN 857 (1218)
Q Consensus 854 ~~~~ 857 (1218)
++++
T Consensus 220 ~~~~ 223 (351)
T PRK11432 220 SPQE 223 (351)
T ss_pred CHHH
Confidence 8753
No 70
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.4e-39 Score=375.36 Aligned_cols=216 Identities=25% Similarity=0.384 Sum_probs=189.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCcee--eEEEECC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFK--GEIKVNG 693 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~--G~i~~~g 693 (1218)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|. + |+|.++|
T Consensus 5 ~l~~~~l~~~~~--------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~~~G~i~~~g 68 (362)
T TIGR03258 5 GIRIDHLRVAYG--------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA--GLTGRIAIAD 68 (362)
T ss_pred EEEEEEEEEEEC--------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCCEEEEECC
Confidence 478999999883 246999999999999999999999999999999999998874 7 9999999
Q ss_pred EeCcc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 694 YPKIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 694 ~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
++... ...++.++||+|+..++|++||+||+.|+...+ .....+.+++++++++.++|.+..++.+ ++|||
T Consensus 69 ~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSg 140 (362)
T TIGR03258 69 RDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSG 140 (362)
T ss_pred EECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCH
Confidence 98643 223567999999999999999999999986543 1234455667899999999998888774 48999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT--GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||+|||||+.+|++|+|||||+|||+..+..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++
T Consensus 141 Gq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~-~G~i~ 218 (362)
T TIGR03258 141 GMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMK-DGRLA 218 (362)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 9999999999999999999999999999999999999999999876 799999999985 6788999999998 59999
Q ss_pred EEcCCCC
Q 000937 851 YSGPLGN 857 (1218)
Q Consensus 851 ~~g~~~~ 857 (1218)
..|++++
T Consensus 219 ~~g~~~~ 225 (362)
T TIGR03258 219 AHGEPQA 225 (362)
T ss_pred EEcCHHH
Confidence 9998753
No 71
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.9e-39 Score=370.72 Aligned_cols=216 Identities=25% Similarity=0.376 Sum_probs=188.1
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|+.+|. +|+|.++|.
T Consensus 40 ~~i~i~nl~k~y~--------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~--~G~i~i~G~ 103 (340)
T PRK13536 40 VAIDLAGVSKSYG--------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGV 103 (340)
T ss_pred eeEEEEEEEEEEC--------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--ceEEEECCE
Confidence 4689999999883 346999999999999999999999999999999999998874 899999999
Q ss_pred eCcc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 695 PKIQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 695 ~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
+... ...++.+||++|+..+++.+||.||+.+....+. ....+..++++++++.++|.+..++.++ +|||
T Consensus 104 ~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~ 175 (340)
T PRK13536 104 PVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVS-----DLSG 175 (340)
T ss_pred ECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCH
Confidence 8643 2345679999999999999999999987654431 1223344567788999999988887754 7999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||++||+||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|. +|++++.
T Consensus 176 G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~-~G~i~~~ 253 (340)
T PRK13536 176 GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-AGRKIAE 253 (340)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEE
Confidence 9999999999999999999999999999999999999999999878999999999985 6778899999998 5999999
Q ss_pred cCCC
Q 000937 853 GPLG 856 (1218)
Q Consensus 853 g~~~ 856 (1218)
|+++
T Consensus 254 g~~~ 257 (340)
T PRK13536 254 GRPH 257 (340)
T ss_pred cCHH
Confidence 9874
No 72
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-39 Score=337.77 Aligned_cols=217 Identities=23% Similarity=0.355 Sum_probs=181.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.+|++..++... ...++|+|||+++.+||+++|+|+||||||||.++|+|+.+|. +|+|.++|++
T Consensus 3 ~l~v~nl~~~y~~~~----------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~--~G~I~~~G~~ 70 (252)
T COG1124 3 LLSVRNLSIVYGGGK----------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS--SGSILLDGKP 70 (252)
T ss_pred eEEEeceEEEecCCc----------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC--CceEEECCcc
Confidence 478899999885321 1236999999999999999999999999999999999998874 8999999987
Q ss_pred Cccc----cccceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCC
Q 000937 696 KIQE----TFVRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVS 768 (1218)
Q Consensus 696 ~~~~----~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~ 768 (1218)
.... .+.+.+-+|+|++. +.|..||++.|.-+... .... +.++++.++++.+||.. ..++. +.
T Consensus 71 ~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~--~~~~~i~~~L~~VgL~~~~l~R~-----P~ 140 (252)
T COG1124 71 LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLS--KSQQRIAELLDQVGLPPSFLDRR-----PH 140 (252)
T ss_pred cCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCcc--HHHHHHHHHHHHcCCCHHHHhcC-----ch
Confidence 5432 35678999999974 78999999998766433 1122 23344889999999974 33433 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
+||||||||++|||||+.+|++|+||||||+||+..+.+|+++|.+++++ |.|.|+++||.+ -+..+|||+++|+ +|
T Consensus 141 eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~-~G 218 (252)
T COG1124 141 ELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMD-NG 218 (252)
T ss_pred hcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeee-CC
Confidence 89999999999999999999999999999999999999999999999866 889999999986 4677899999998 59
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
++++.++.+
T Consensus 219 ~ivE~~~~~ 227 (252)
T COG1124 219 QIVEIGPTE 227 (252)
T ss_pred eEEEeechh
Confidence 999999864
No 73
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-39 Score=350.63 Aligned_cols=215 Identities=25% Similarity=0.380 Sum_probs=189.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+.++|++|.++. +..+|+|+|+++++||.++|+||||||||||+++|+|+.+|. +|+|.++|.+
T Consensus 3 ~i~~~~l~~~y~~-------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~--~G~v~~~g~~ 67 (235)
T COG1122 3 MIEAENLSFRYPG-------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT--SGEVLVDGLD 67 (235)
T ss_pred eEEEEEEEEEcCC-------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC--CCEEEECCee
Confidence 4678999998852 257999999999999999999999999999999999998874 8999999998
Q ss_pred Cc----cccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 696 KI----QETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 696 ~~----~~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
.. ....++.+|||+|++. .+..-||.|.+.|+.... ..+.++.+++++++++.+++.+..++.. ..|
T Consensus 68 ~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~L 139 (235)
T COG1122 68 TSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP-----FNL 139 (235)
T ss_pred ccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc-----ccc
Confidence 54 2356788999999964 566789999999987543 2345567889999999999999887763 589
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
||||||||+||.+|+.+|++|+|||||+|||+..+..+++.++++.++ |+|+|++|||.+ .+.+.+|++++|. +|++
T Consensus 140 SGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~-~G~i 217 (235)
T COG1122 140 SGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLD-DGKI 217 (235)
T ss_pred CCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999887 799999999986 6777899999998 5999
Q ss_pred EEEcCC
Q 000937 850 IYSGPL 855 (1218)
Q Consensus 850 ~~~g~~ 855 (1218)
+++|++
T Consensus 218 ~~~g~p 223 (235)
T COG1122 218 LADGDP 223 (235)
T ss_pred eecCCH
Confidence 999986
No 74
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-40 Score=339.85 Aligned_cols=218 Identities=24% Similarity=0.372 Sum_probs=189.3
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++.++++..+ +...+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++
T Consensus 5 L~v~~l~k~F--------------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~--~G~v~~~G~~i 68 (250)
T COG0411 5 LEVRGLSKRF--------------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS--SGTVIFRGRDI 68 (250)
T ss_pred eeeccceeec--------------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC--CceEEECCccc
Confidence 5677777666 3568999999999999999999999999999999999999984 89999999987
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhcc--------CCC-CChhhHHHHHHHHHHHcCCCcccccccc
Q 000937 697 IQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRL--------APQ-INSKTKADCVNHVLKTIELDGIKESLVG 763 (1218)
Q Consensus 697 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~--------~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 763 (1218)
... ..+..++.-+|...+|++|||.||+..++..+. +.. ...++..+++.++++.+||.+.+|...|
T Consensus 69 t~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~ 148 (250)
T COG0411 69 TGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG 148 (250)
T ss_pred CCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh
Confidence 542 234557888999999999999999998865331 111 1234456778899999999999999875
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+||+|||||+.|||||+++|++|+||||.+||.+..+.++.+.|++++++ |.||+++.||++ -++.+||++++
T Consensus 149 -----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~V 222 (250)
T COG0411 149 -----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVV 222 (250)
T ss_pred -----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEe
Confidence 79999999999999999999999999999999999999999999999885 799999999997 58899999999
Q ss_pred EecCCEEEEEcCCCC
Q 000937 843 LKTGGRIIYSGPLGN 857 (1218)
Q Consensus 843 l~~~G~~~~~g~~~~ 857 (1218)
|. .|+++.+|+|++
T Consensus 223 l~-~G~~IAeG~P~e 236 (250)
T COG0411 223 LN-YGEVIAEGTPEE 236 (250)
T ss_pred cc-CCcCcccCCHHH
Confidence 98 599999999864
No 75
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=4.3e-39 Score=371.16 Aligned_cols=218 Identities=24% Similarity=0.388 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++
T Consensus 2 ~L~i~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~i~g~~ 65 (353)
T PRK10851 2 SIEIANIKKSFG--------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT--SGHIRFHGTD 65 (353)
T ss_pred EEEEEEEEEEeC--------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEE
Confidence 367899998873 246999999999999999999999999999999999998774 8999999998
Q ss_pred Cccc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 696 KIQE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
+... ..++.++|++|+..++|++||+||+.|+...... .....++..++++++++.++|.+..++.+ .+||||
T Consensus 66 i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG 140 (353)
T PRK10851 66 VSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGG 140 (353)
T ss_pred CCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHH
Confidence 6432 2346799999999999999999999987643211 11233445667899999999988877764 589999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++...+|++++|. +|+++..
T Consensus 141 q~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~-~G~i~~~ 218 (353)
T PRK10851 141 QKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMS-QGNIEQA 218 (353)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEE
Confidence 999999999999999999999999999999999999999999876 899999999985 6788999999998 5999999
Q ss_pred cCCC
Q 000937 853 GPLG 856 (1218)
Q Consensus 853 g~~~ 856 (1218)
|+++
T Consensus 219 g~~~ 222 (353)
T PRK10851 219 GTPD 222 (353)
T ss_pred cCHH
Confidence 9874
No 76
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-39 Score=371.69 Aligned_cols=217 Identities=25% Similarity=0.388 Sum_probs=189.1
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|+
T Consensus 18 ~~l~l~~v~~~~~--------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~i~g~ 81 (377)
T PRK11607 18 PLLEIRNLTKSFD--------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT--AGQIMLDGV 81 (377)
T ss_pred ceEEEEeEEEEEC--------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCE
Confidence 3588999998873 246899999999999999999999999999999999998874 899999999
Q ss_pred eCcc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 695 PKIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 695 ~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
++.. ...++.+||++|+..++|++||.||+.|+...+ .....+.+++++++++.++|.+..++.. .+||||
T Consensus 82 ~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgG 153 (377)
T PRK11607 82 DLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGG 153 (377)
T ss_pred ECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 8643 234678999999999999999999999976533 1234455667889999999998877764 489999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||+|||||+.+|++|+|||||+|||+..+..+.+.|+++.++ |.|+|++|||++ ++..++|++++|. +|+++..
T Consensus 154 q~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~-~G~i~~~ 231 (377)
T PRK11607 154 QRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMN-RGKFVQI 231 (377)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEe-CCEEEEE
Confidence 999999999999999999999999999999999999999998764 999999999985 6788999999998 6999999
Q ss_pred cCCCC
Q 000937 853 GPLGN 857 (1218)
Q Consensus 853 g~~~~ 857 (1218)
|++.+
T Consensus 232 g~~~~ 236 (377)
T PRK11607 232 GEPEE 236 (377)
T ss_pred cCHHH
Confidence 98753
No 77
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=7.2e-39 Score=370.77 Aligned_cols=215 Identities=23% Similarity=0.374 Sum_probs=188.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++
T Consensus 14 ~L~l~~l~~~~~--------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~--~G~I~~~g~~ 77 (375)
T PRK09452 14 LVELRGISKSFD--------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD--SGRIMLDGQD 77 (375)
T ss_pred eEEEEEEEEEEC--------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEE
Confidence 588999999873 246899999999999999999999999999999999998874 8999999998
Q ss_pred Ccc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 696 KIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
+.. ...++.+||++|+..++|++||+||+.|+...+ .....+..++++++++.++|.+..++.+ .+|||||
T Consensus 78 i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq 149 (375)
T PRK09452 78 ITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQ 149 (375)
T ss_pred CCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 643 223577999999999999999999999986433 1233444567889999999998888764 4899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||+|||||+.+|++|+|||||+|||+..+..+.+.|++++++ |+|+|++||++. ++..++|++++|. +|+++..|
T Consensus 150 ~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~-~G~i~~~g 227 (375)
T PRK09452 150 QQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMR-DGRIEQDG 227 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999875 999999999985 6788999999998 69999999
Q ss_pred CCC
Q 000937 854 PLG 856 (1218)
Q Consensus 854 ~~~ 856 (1218)
++.
T Consensus 228 ~~~ 230 (375)
T PRK09452 228 TPR 230 (375)
T ss_pred CHH
Confidence 874
No 78
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-39 Score=347.14 Aligned_cols=210 Identities=29% Similarity=0.451 Sum_probs=177.4
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 65 (213)
T cd03259 2 ELKGLSKTYG--------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVT 65 (213)
T ss_pred eeeeeEEEeC--------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcC
Confidence 5778888773 24699999999999999999999999999999999998876 4899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 698 Q-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 698 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
. ...++.++|++|++.+++.+|++||+.+..... ........+.++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~q 137 (213)
T cd03259 66 GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQ 137 (213)
T ss_pred cCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHH
Confidence 3 223457999999998899999999998865322 1122334456788999999987766654 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 138 rl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~G~i~~~g 213 (213)
T cd03259 138 RVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMN-EGRIVQVG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 999999999999999999999999999999999999999764 999999999975 5677899999998 58988654
No 79
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-38 Score=346.81 Aligned_cols=215 Identities=24% Similarity=0.393 Sum_probs=180.6
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++..
T Consensus 2 ~~~~l~~~~~~~----------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 69 (220)
T cd03293 2 EVRNVSKTYGGG----------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVT 69 (220)
T ss_pred eEEEEEEEcCCC----------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECc
Confidence 578888877420 0114799999999999999999999999999999999998776 4899999998864
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000937 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKR 777 (1218)
Q Consensus 698 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqR 777 (1218)
. .++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ .+||||||||
T Consensus 70 ~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 139 (220)
T cd03293 70 G--PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQR 139 (220)
T ss_pred c--ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHH
Confidence 2 35679999999988899999999988754321 222334566888999999987766654 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEEcCC
Q 000937 778 LTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKT-GGRIIYSGPL 855 (1218)
Q Consensus 778 v~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~~~~g~~ 855 (1218)
++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|.+ +|+++..+++
T Consensus 140 l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999999999865 4899999999985 56778999999974 5999988875
No 80
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=7.8e-39 Score=347.92 Aligned_cols=209 Identities=23% Similarity=0.357 Sum_probs=176.2
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++.
T Consensus 2 l~~~~l~~~~~~------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 67 (216)
T TIGR00960 2 IRFEQVSKAYPG------------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDL 67 (216)
T ss_pred eEEEEEEEEecC------------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEeh
Confidence 578899988741 123699999999999999999999999999999999998876 489999999875
Q ss_pred ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
... ..++.++|++|++.+++.+||.||+.+....+. .......++++++++.+++.+..++.. .+|
T Consensus 68 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 139 (216)
T TIGR00960 68 TRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQL 139 (216)
T ss_pred hhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 321 235679999999999999999999988754321 122334566888999999987776654 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++
T Consensus 140 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~-~G~i 216 (216)
T TIGR00960 140 SGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLS-RGRL 216 (216)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCcC
Confidence 999999999999999999999999999999999999999999999877999999999975 5667899999997 4763
No 81
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.1e-38 Score=363.38 Aligned_cols=215 Identities=26% Similarity=0.377 Sum_probs=184.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+
T Consensus 4 ~i~~~~l~~~~~--------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 67 (303)
T TIGR01288 4 AIDLVGVSKSYG--------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEP 67 (303)
T ss_pred EEEEEeEEEEeC--------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 578999998873 24699999999999999999999999999999999998876 48999999987
Q ss_pred Ccc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 696 KIQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
... ...++.+||++|++.+++.+||+||+.+...... ....+..++++++++.+++.+..++.+ ++||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG 139 (303)
T TIGR01288 68 VPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGG 139 (303)
T ss_pred CcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHH
Confidence 532 2245679999999999999999999987543321 222333456778899999988777765 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|. +|++++.|
T Consensus 140 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 217 (303)
T TIGR01288 140 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-SGRKIAEG 217 (303)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 999999999999999999999999999999999999999999878999999999985 6677899999998 59999999
Q ss_pred CCC
Q 000937 854 PLG 856 (1218)
Q Consensus 854 ~~~ 856 (1218)
+++
T Consensus 218 ~~~ 220 (303)
T TIGR01288 218 RPH 220 (303)
T ss_pred CHH
Confidence 863
No 82
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-38 Score=347.07 Aligned_cols=213 Identities=27% Similarity=0.379 Sum_probs=181.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.
T Consensus 1 i~~~~~~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 64 (220)
T cd03265 1 IEVENLVKKYG--------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDV 64 (220)
T ss_pred CEEEEEEEEEC--------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEec
Confidence 35788888773 24699999999999999999999999999999999998876 489999999875
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
.. ...++.++|++|++.+++.+||+||+.+....+. ....+..++++++++.+++.+..++.+ ..|||||
T Consensus 65 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 136 (220)
T cd03265 65 VREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGM 136 (220)
T ss_pred CcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHH
Confidence 32 2234679999999999999999999988754321 122334456889999999987777664 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|
T Consensus 137 ~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~-~G~i~~~~ 214 (220)
T cd03265 137 RRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIID-HGRIIAEG 214 (220)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEeC
Confidence 99999999999999999999999999999999999999999876 899999999985 5677899999997 59999888
Q ss_pred CC
Q 000937 854 PL 855 (1218)
Q Consensus 854 ~~ 855 (1218)
++
T Consensus 215 ~~ 216 (220)
T cd03265 215 TP 216 (220)
T ss_pred Ch
Confidence 75
No 83
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=370.25 Aligned_cols=215 Identities=24% Similarity=0.393 Sum_probs=186.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|. +|+|.++|++
T Consensus 3 ~l~i~~l~~~~~--------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~--~G~I~~~g~~ 66 (369)
T PRK11000 3 SVTLRNVTKAYG--------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT--SGDLFIGEKR 66 (369)
T ss_pred EEEEEEEEEEeC--------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEE
Confidence 378899998873 246999999999999999999999999999999999998774 8999999998
Q ss_pred Ccc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 696 KIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
... ...++.++|++|+..+++++||+||+.|+...+. ....+..++++++++.++|.+..++.+ .+|||||
T Consensus 67 i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq 138 (369)
T PRK11000 67 MNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQ 138 (369)
T ss_pred CCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHH
Confidence 643 1234679999999999999999999998765331 223444567889999999988777764 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++..|
T Consensus 139 ~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~-~G~i~~~g 216 (369)
T PRK11000 139 RQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVG 216 (369)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999765 999999999985 6778899999998 69999999
Q ss_pred CCC
Q 000937 854 PLG 856 (1218)
Q Consensus 854 ~~~ 856 (1218)
+++
T Consensus 217 ~~~ 219 (369)
T PRK11000 217 KPL 219 (369)
T ss_pred CHH
Confidence 864
No 84
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-39 Score=329.54 Aligned_cols=214 Identities=26% Similarity=0.394 Sum_probs=179.4
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++.+|++..| ++.++|++||+++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++
T Consensus 4 L~v~~l~~~Y--------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~di 67 (237)
T COG0410 4 LEVENLSAGY--------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDI 67 (237)
T ss_pred eeEEeEeecc--------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeec
Confidence 6788888776 346899999999999999999999999999999999999886 389999999997
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcC-CCccccccccCCCCCCCC
Q 000937 697 IQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE-LDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 697 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~LS 771 (1218)
... ..++.++||||....||.|||+|||..++..+.. ++......+++.+.+- |.+..+.+.| +||
T Consensus 68 t~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LS 138 (237)
T COG0410 68 TGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLS 138 (237)
T ss_pred CCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCC
Confidence 542 3456799999999999999999999987654421 1111122566666653 4455555544 799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||||.++|||||+.+|++|+|||||.||-|.-.++|.+.+++++++ |.||+++.++.. ...+..|+.++|. .|+++
T Consensus 139 GGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle-~Griv 216 (237)
T COG0410 139 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLE-NGRIV 216 (237)
T ss_pred hHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEe-CCEEE
Confidence 99999999999999999999999999999999999999999999976 789999999875 4678899999998 59999
Q ss_pred EEcCCCC
Q 000937 851 YSGPLGN 857 (1218)
Q Consensus 851 ~~g~~~~ 857 (1218)
++|+.++
T Consensus 217 ~~G~~~e 223 (237)
T COG0410 217 LSGTAAE 223 (237)
T ss_pred EecCHHH
Confidence 9999764
No 85
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=9.1e-39 Score=363.94 Aligned_cols=203 Identities=27% Similarity=0.414 Sum_probs=177.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc--ccccceEEEeccCCCCCCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ--ETFVRVSGYCEQTDIHSPHIT 719 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lT 719 (1218)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT--SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 357999999999999999999999999999999999998774 8999999988643 234567999999999999999
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000937 720 IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799 (1218)
Q Consensus 720 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsg 799 (1218)
|+||+.+.+.++. ....+..++++++++.+++.+..++.+ ++|||||||||+||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765432 223334567889999999988777765 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 800 LDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 800 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|. +|++++.|+++
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~-~G~i~~~g~~~ 209 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIID-HGRIIAEGTPE 209 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999999878999999999985 6778899999997 59999999863
No 86
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-38 Score=343.39 Aligned_cols=209 Identities=23% Similarity=0.410 Sum_probs=177.9
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (210)
T cd03269 2 EVENVTKRFG--------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLD 65 (210)
T ss_pred EEEEEEEEEC--------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchh
Confidence 5788888763 24699999999999999999999999999999999998776 4899999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000937 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKR 777 (1218)
Q Consensus 698 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqR 777 (1218)
. ..++.++|++|+..+++.+|++||+.+....+. ....+..+.++++++.+++.+..++.+ .+||||||||
T Consensus 66 ~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (210)
T cd03269 66 I-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQK 136 (210)
T ss_pred H-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHH
Confidence 3 345679999999999999999999988654331 122334566788999999987666654 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 778 LTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 778 v~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|. +|++++.|
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~ 210 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLN-KGRAVLYG 210 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEe-CCEEEecC
Confidence 99999999999999999999999999999999999999877999999999975 5667899999997 58987654
No 87
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.2e-38 Score=370.46 Aligned_cols=219 Identities=26% Similarity=0.365 Sum_probs=186.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++++|+|+||++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++
T Consensus 3 ~L~~~nls~~y~--------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~ 66 (402)
T PRK09536 3 MIDVSDLSVEFG--------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDD 66 (402)
T ss_pred eEEEeeEEEEEC--------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 478999998873 35799999999999999999999999999999999999877 48999999988
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCC-CCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP-QINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
... ...++.+||++|+..+++.+||+||+.++....... ........++++++++.+++.+..++.+ ++||
T Consensus 67 i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LS 141 (402)
T PRK09536 67 VEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLS 141 (402)
T ss_pred cCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 643 234577999999999989999999998864221100 0012334567899999999988887764 4899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
||||||++|||+|+++|++|+|||||+|||+.++.+++++|++++++|+|||+++|+++ ++.+.+|++++|. +|+++.
T Consensus 142 gGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~-~G~iv~ 219 (402)
T PRK09536 142 GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLA-DGRVRA 219 (402)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 5778899999998 699999
Q ss_pred EcCCCC
Q 000937 852 SGPLGN 857 (1218)
Q Consensus 852 ~g~~~~ 857 (1218)
.|++++
T Consensus 220 ~G~~~e 225 (402)
T PRK09536 220 AGPPAD 225 (402)
T ss_pred ecCHHH
Confidence 998754
No 88
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.5e-38 Score=343.26 Aligned_cols=210 Identities=24% Similarity=0.398 Sum_probs=178.1
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~ 65 (213)
T cd03301 2 ELENVTKRFG--------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVT 65 (213)
T ss_pred EEEeeEEEEC--------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 5788888773 24699999999999999999999999999999999998876 4899999998864
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 698 QE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 698 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
.. ..++.++|++|++.+++.+|++||+.+..... ....++..++++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQ 137 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHH
Confidence 31 22457999999998888999999998865432 1223344556788999999987777664 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.|
T Consensus 138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~g~~~~~g 213 (213)
T cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMN-DGQIQQIG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE-CCEEEecC
Confidence 999999999999999999999999999999999999999865 899999999975 5677899999997 58998765
No 89
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-38 Score=348.02 Aligned_cols=217 Identities=26% Similarity=0.386 Sum_probs=181.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~ 65 (239)
T cd03296 2 SIEVRNVSKRFG--------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGED 65 (239)
T ss_pred EEEEEeEEEEEC--------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 368899998873 24699999999999999999999999999999999998876 48999999987
Q ss_pred Cccc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 696 KIQE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
.... ..++.++|++|++.+++.+||+||+.+....+.. .........+.++++++.+++.+..++.+ .+||||
T Consensus 66 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 140 (239)
T cd03296 66 ATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGG 140 (239)
T ss_pred CCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHH
Confidence 5432 2245699999999888899999999886543211 00112233456788899999987766654 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.
T Consensus 141 ~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~ 218 (239)
T cd03296 141 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMN-KGRIEQV 218 (239)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEe
Confidence 999999999999999999999999999999999999999999875 899999999985 5677899999997 5999999
Q ss_pred cCC
Q 000937 853 GPL 855 (1218)
Q Consensus 853 g~~ 855 (1218)
|++
T Consensus 219 ~~~ 221 (239)
T cd03296 219 GTP 221 (239)
T ss_pred cCH
Confidence 875
No 90
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-38 Score=364.52 Aligned_cols=218 Identities=21% Similarity=0.305 Sum_probs=185.1
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++.. .+.+++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.++
T Consensus 2 i~i~~l~~~y~~~----------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i 69 (343)
T PRK11153 2 IELKNISKVFPQG----------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDL 69 (343)
T ss_pred EEEEeEEEEeCCC----------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 5789999988421 0135799999999999999999999999999999999999877 489999999986
Q ss_pred ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
... ..++.++|++|+..+++.+||+||+.+...... ....+..++++++++.+||.+..++.+ ++|
T Consensus 70 ~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 141 (343)
T PRK11153 70 TALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQL 141 (343)
T ss_pred CcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 421 235679999999999999999999998754331 223344567889999999987777654 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|. +|++
T Consensus 142 SgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~-~G~i 219 (343)
T PRK11153 142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVID-AGRL 219 (343)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999765 999999999985 5677899999997 6999
Q ss_pred EEEcCCC
Q 000937 850 IYSGPLG 856 (1218)
Q Consensus 850 ~~~g~~~ 856 (1218)
++.|+++
T Consensus 220 ~~~g~~~ 226 (343)
T PRK11153 220 VEQGTVS 226 (343)
T ss_pred EEEcCHH
Confidence 9999864
No 91
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.8e-38 Score=348.59 Aligned_cols=215 Identities=24% Similarity=0.386 Sum_probs=180.1
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (236)
T cd03219 2 EVRGLTKRFG--------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDIT 65 (236)
T ss_pred eeeeeEEEEC--------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECC
Confidence 5678888763 24699999999999999999999999999999999998876 4899999998754
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCC-------CChhhHHHHHHHHHHHcCCCccccccccCCC
Q 000937 698 QE---T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQ-------INSKTKADCVNHVLKTIELDGIKESLVGIPG 766 (1218)
Q Consensus 698 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 766 (1218)
.. . .++.++|++|++.+++.+||+||+.+......... ....+..+.++++++.+++.+..++.+
T Consensus 66 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (236)
T cd03219 66 GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA---- 141 (236)
T ss_pred CCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh----
Confidence 31 1 23468999999999999999999988754321110 012334456788999999987766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +
T Consensus 142 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~-~ 218 (236)
T cd03219 142 -GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLD-Q 218 (236)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEe-C
Confidence 479999999999999999999999999999999999999999999999878999999999985 5667899999997 5
Q ss_pred CEEEEEcCC
Q 000937 847 GRIIYSGPL 855 (1218)
Q Consensus 847 G~~~~~g~~ 855 (1218)
|+++..|++
T Consensus 219 G~i~~~~~~ 227 (236)
T cd03219 219 GRVIAEGTP 227 (236)
T ss_pred CEEEeecCH
Confidence 999998875
No 92
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.6e-38 Score=365.22 Aligned_cols=204 Identities=23% Similarity=0.328 Sum_probs=178.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc---cc----cceEEEeccCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE---TF----VRVSGYCEQTDIH 714 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~----~~~~~~v~q~~~~ 714 (1218)
.+.+|+|+||+|++||+++|+|||||||||||++|+|+.+| .+|+|.++|.++... .. ++.++||+|+..+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 45799999999999999999999999999999999999887 489999999986531 22 5679999999999
Q ss_pred CCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000937 715 SPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMD 794 (1218)
Q Consensus 715 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllD 794 (1218)
+|++||+||+.|..... ....++..+++.++++.+||.+..++.. .+|||||||||+|||||+.+|++||||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999876543 2234455677899999999988777764 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 795 EPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 795 EPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
|||+|||+.++..+.+.|+++.++ |+|||++||+++ ++...+|++++|. +|+++..|++++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~-~G~iv~~g~~~e 216 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMK-AGEIVQVGTPDE 216 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEeeCCHHH
Confidence 999999999999999999999765 999999999985 5778899999997 699999998653
No 93
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-39 Score=379.87 Aligned_cols=217 Identities=25% Similarity=0.420 Sum_probs=184.3
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
-.|+|+|++|.||.++ +.+||+|+||+|+|||++||+||||+||||+.++|-.+++| .+|+|.+||+
T Consensus 464 G~IeF~~VsFaYP~Rp-----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P--tsG~IllDG~ 530 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRP-----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP--TSGRILLDGV 530 (716)
T ss_pred ceEEEEEeeeecCCCC-----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCe
Confidence 4689999999998643 46899999999999999999999999999999999999887 4999999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHH-----HHHHHHHcCCCccccccccCCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADC-----VNHVLKTIELDGIKESLVGIPG 766 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~~~~ 766 (1218)
|+.+ ..+++.+|+|.|++.+|. -||+|||.|+.. ..+.++..+. +.+. ..++.+-.||.+|..|
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~F--I~~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEF--ITNFPDGYNTVVGEKG 602 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHH--HHhCccccccccCCcc
Confidence 9754 346789999999999986 699999999753 2222222211 2222 3467778999999876
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
. .||||||||++|||||++||+||||||.||+||+++...+.+.|.++.+ ++|||++.|+++ ..+.+|++++++ +
T Consensus 603 ~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~-~ 677 (716)
T KOG0058|consen 603 S-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVID-K 677 (716)
T ss_pred c-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEc-C
Confidence 4 6999999999999999999999999999999999999999999999865 599999999875 589999999998 5
Q ss_pred CEEEEEcCCCC
Q 000937 847 GRIIYSGPLGN 857 (1218)
Q Consensus 847 G~~~~~g~~~~ 857 (1218)
|++++.|+.++
T Consensus 678 G~V~E~G~h~e 688 (716)
T KOG0058|consen 678 GRVVEMGTHDE 688 (716)
T ss_pred CeEEecccHHH
Confidence 99999997643
No 94
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.9e-38 Score=343.11 Aligned_cols=215 Identities=27% Similarity=0.447 Sum_probs=180.4
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++.. .+..++++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++.
T Consensus 2 l~~~~v~~~~~~~----------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 69 (218)
T cd03266 2 ITADALTKRFRDV----------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDV 69 (218)
T ss_pred eEEEEEEEecCCC----------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEc
Confidence 5688999887421 0112699999999999999999999999999999999999876 489999999876
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
.. ..+++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+++.+..+..+ ..|||||
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (218)
T cd03266 70 VKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGM 141 (218)
T ss_pred ccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHH
Confidence 43 234567999999999999999999998765432 1223344567888999999987777654 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 142 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~-~G~i~~~~ 218 (218)
T cd03266 142 RQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLH-RGRVVYEG 218 (218)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEeecC
Confidence 99999999999999999999999999999999999999999877999999999975 5677899999997 58987654
No 95
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=4.6e-38 Score=345.96 Aligned_cols=213 Identities=23% Similarity=0.371 Sum_probs=180.6
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 65 (232)
T cd03218 2 RAENLSKRYG--------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDIT 65 (232)
T ss_pred eEEEEEEEeC--------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 5788888773 24699999999999999999999999999999999998876 4899999998753
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 698 QE---T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 698 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
.. . .++.++|++|++.+++.+||+||+.+....+. .......+.++++++.+++.+..++.+ +.||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 137 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGG 137 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHH
Confidence 21 1 23468999999999999999999987643321 122334456788999999987766654 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++..|
T Consensus 138 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 215 (232)
T cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIY-EGKVLAEG 215 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEEe
Confidence 999999999999999999999999999999999999999999877999999999985 6788899999997 69999988
Q ss_pred CCC
Q 000937 854 PLG 856 (1218)
Q Consensus 854 ~~~ 856 (1218)
+.+
T Consensus 216 ~~~ 218 (232)
T cd03218 216 TPE 218 (232)
T ss_pred CHH
Confidence 763
No 96
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=5e-38 Score=357.37 Aligned_cols=213 Identities=23% Similarity=0.384 Sum_probs=185.2
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.
T Consensus 3 l~~~~l~~~~~--------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~ 66 (301)
T TIGR03522 3 IRVSSLTKLYG--------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDV 66 (301)
T ss_pred EEEEEEEEEEC--------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 67899998873 24699999999999999999999999999999999999876 489999999886
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
.. ...++.+||++|++.+++.+||.||+.+.+.++. ...++..++++++++.+|+.+..++.+ +.|||||
T Consensus 67 ~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~ 138 (301)
T TIGR03522 67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGY 138 (301)
T ss_pred ccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHH
Confidence 43 2345679999999999999999999998765432 223344556889999999998887775 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcC
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 854 (1218)
|||++||+||+++|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|. +|++++.|+
T Consensus 139 ~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~-~G~i~~~g~ 215 (301)
T TIGR03522 139 RQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIIN-KGKIVADKK 215 (301)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEeCC
Confidence 9999999999999999999999999999999999999999865 799999999985 6788899999998 599999998
Q ss_pred CC
Q 000937 855 LG 856 (1218)
Q Consensus 855 ~~ 856 (1218)
.+
T Consensus 216 ~~ 217 (301)
T TIGR03522 216 LD 217 (301)
T ss_pred HH
Confidence 64
No 97
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.3e-38 Score=340.96 Aligned_cols=206 Identities=28% Similarity=0.426 Sum_probs=175.8
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (208)
T cd03268 2 KTNDLTKTYG--------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQ 65 (208)
T ss_pred EEEEEEEEEC--------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCccc
Confidence 5788888773 24699999999999999999999999999999999998876 4899999998753
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 698 Q-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 698 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
. ...++.++|++|++.+++.+||+||+.+....+. . ..++++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 133 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQ 133 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHH
Confidence 2 2334679999999999999999999988654221 1 2345778899999987777654 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|. +|++++.|
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~-~g~i~~~g 208 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIIN-KGKLIEEG 208 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 999999999999999999999999999999999999999878999999999975 5667899999997 58988764
No 98
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=6.8e-38 Score=342.74 Aligned_cols=219 Identities=35% Similarity=0.628 Sum_probs=181.3
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC---CCceeeEEEECC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT---SGCFKGEIKVNG 693 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~---~~~~~G~i~~~g 693 (1218)
+.|+|+++.++.. +..+++++|+|+++++||+++|+||||||||||+++|+|..+ + .+|+|.++|
T Consensus 4 ~~~~~~~~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~--~~G~i~~~g 71 (226)
T cd03234 4 LPWWDVGLKAKNW----------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT--TSGQILFNG 71 (226)
T ss_pred ceeecceeeeecC----------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCC--CceEEEECC
Confidence 5688998887421 013579999999999999999999999999999999999876 4 489999999
Q ss_pred EeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHH-HHHHcCCCccccccccCCCCCCCCH
Q 000937 694 YPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNH-VLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 694 ~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
.+......++.++|++|++.+++.+||+||+.+......+.........+++++ .++.+++.+..++.+ +.|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 146 (226)
T cd03234 72 QPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISG 146 (226)
T ss_pred EECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCH
Confidence 886544456779999999999999999999998765432221112222234455 788888877666553 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.+|++++|. +|++++.
T Consensus 147 G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~-~G~i~~~ 225 (226)
T cd03234 147 GERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLS-SGEIVYS 225 (226)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEe-CCEEEec
Confidence 999999999999999999999999999999999999999999987799999999998546889999999998 5899876
Q ss_pred c
Q 000937 853 G 853 (1218)
Q Consensus 853 g 853 (1218)
|
T Consensus 226 g 226 (226)
T cd03234 226 G 226 (226)
T ss_pred C
Confidence 5
No 99
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.3e-39 Score=326.54 Aligned_cols=213 Identities=25% Similarity=0.419 Sum_probs=192.4
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
+++++++.++ +++++++|+||+++||++.+++|||||||||.+++|.|+..+ ++|+|.++|.+.
T Consensus 3 L~ie~vtK~F--------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~ 66 (300)
T COG4152 3 LEIEGVTKSF--------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPL 66 (300)
T ss_pred eEEecchhcc--------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcch
Confidence 5677777666 357899999999999999999999999999999999999887 489999999997
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 697 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
+.. .+.+|||.|.+.-+++.+||.|.|.|-+.++. ++..+.++.++.+++.+++.+....++ ++||.|++|
T Consensus 67 ~~~-~~~rIGyLPEERGLy~k~tv~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQ 137 (300)
T COG4152 67 SQE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQ 137 (300)
T ss_pred hhh-hhhhcccChhhhccCccCcHHHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhH
Confidence 643 45679999999999999999999999998874 456677778899999999998877765 589999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
++.+..+++++|++++||||+|||||.+.+.+-+.+.+++++|.|||+++|++. .+.++||++++|. +|+.|.+|+..
T Consensus 138 KIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~-kG~~V~~G~v~ 215 (300)
T COG4152 138 KIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLK-KGQTVLYGTVE 215 (300)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheec-CCceEEeccHH
Confidence 999999999999999999999999999999999999999999999999999986 7889999999998 59999999974
No 100
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4.1e-38 Score=345.07 Aligned_cols=214 Identities=25% Similarity=0.321 Sum_probs=177.7
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC-----CCCceeeEEEEC
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK-----TSGCFKGEIKVN 692 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~-----~~~~~~G~i~~~ 692 (1218)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++ .+|+|.++
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~--~~G~i~~~ 65 (227)
T cd03260 2 ELRDLNVYYG--------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP--DEGEVLLD 65 (227)
T ss_pred EEEEEEEEcC--------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC--CCeEEEEC
Confidence 5788888763 246999999999999999999999999999999999987 55 48999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
|++... ...++.++|++|++.++ .+||+||+.+....+. .....+..++++++++.+++.+..+.... +
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~ 139 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---A 139 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---c
Confidence 987532 22356799999998887 7999999988654321 11112234567889999999876555421 2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+.+|++++|. +|
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~-~G 216 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLL-NG 216 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEe-CC
Confidence 479999999999999999999999999999999999999999999999877 99999999985 5677899999998 59
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
++++.|+++
T Consensus 217 ~i~~~g~~~ 225 (227)
T cd03260 217 RLVEFGPTE 225 (227)
T ss_pred EEEEecCcc
Confidence 999998764
No 101
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.4e-38 Score=343.53 Aligned_cols=208 Identities=29% Similarity=0.425 Sum_probs=173.1
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++.. ++.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~~----------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 69 (218)
T cd03255 2 ELKNLSKTYGGG----------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDIS 69 (218)
T ss_pred eEeeeEEEecCC----------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehh
Confidence 578888877421 0114799999999999999999999999999999999999876 4899999998754
Q ss_pred cc------c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 698 QE------T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 698 ~~------~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
.. . .++.++|++|++.+++.+||+||+.+....+. .......+.++++++.+|+.+..++.+ +.|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 21 1 24579999999999999999999998754331 122334456888999999987766654 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++ +.+|++++|. +|+
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~-~G~ 217 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELR-DGK 217 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEee-CCc
Confidence 99999999999999999999999999999999999999999999987 5999999999985 34 5899999997 475
No 102
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-38 Score=317.73 Aligned_cols=215 Identities=27% Similarity=0.446 Sum_probs=184.1
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
|+.+|++|++. .+++|++||++++|||++||+||||||||||||.|+|...|+ +|++.+||.+.
T Consensus 2 i~a~nls~~~~--------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~--~G~v~~~g~~l 65 (259)
T COG4559 2 IRAENLSYSLA--------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPL 65 (259)
T ss_pred eeeeeeEEEee--------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC--CCeEeeCCcCh
Confidence 56789999873 468999999999999999999999999999999999987764 89999999986
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCC--hhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 697 IQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQIN--SKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 697 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
.. ....+..+.+||+..+-+..||+|-+.++.. +.... ..+..+.++++++..++.++..+.+ ..||
T Consensus 66 ~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LS 137 (259)
T COG4559 66 NSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRDY-----RTLS 137 (259)
T ss_pred hhCCHHHHHHHhhhcccCcccccceEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccch-----hhcC
Confidence 43 2344667899999988878999999998743 32222 2245556888999999999887764 4799
Q ss_pred HHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 772 TEQRKRLTIGVELVA------NPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 772 gGerqRv~ia~~L~~------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
|||||||.+||.|++ ++++||||||||.||...+..++++.|+++++|..|+++.||++. ...++|++++|.
T Consensus 138 GGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~- 215 (259)
T COG4559 138 GGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH- 215 (259)
T ss_pred chHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-
Confidence 999999999999986 445899999999999999999999999999999999999999985 567899999997
Q ss_pred CCEEEEEcCCCC
Q 000937 846 GGRIIYSGPLGN 857 (1218)
Q Consensus 846 ~G~~~~~g~~~~ 857 (1218)
+||++..|++.+
T Consensus 216 ~Grv~a~g~p~~ 227 (259)
T COG4559 216 QGRVIASGSPQD 227 (259)
T ss_pred CCeEeecCCHHH
Confidence 699999999875
No 103
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-38 Score=349.62 Aligned_cols=217 Identities=27% Similarity=0.361 Sum_probs=178.8
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..
T Consensus 2 ~~~~l~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 66 (241)
T cd03256 2 EVENLSKTYPN-------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDIN 66 (241)
T ss_pred EEeeEEEecCC-------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEecc
Confidence 57788877631 14699999999999999999999999999999999998876 4899999998754
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhcc-----CCCCChhhHHHHHHHHHHHcCCCccccccccCCC
Q 000937 698 QE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRL-----APQINSKTKADCVNHVLKTIELDGIKESLVGIPG 766 (1218)
Q Consensus 698 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 766 (1218)
.. ..++.++|++|++.+++.+||+||+.+...... ..........++++++++.+++.+..+..+
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 142 (241)
T cd03256 67 KLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA---- 142 (241)
T ss_pred ccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc----
Confidence 21 234679999999999999999999987532110 000111233456788899999987666553
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.
T Consensus 143 -~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~- 219 (241)
T cd03256 143 -DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLK- 219 (241)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 589999999999999999999999999999999999999999999999764 999999999986 5667899999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|++++.|+++
T Consensus 220 ~G~i~~~~~~~ 230 (241)
T cd03256 220 DGRIVFDGPPA 230 (241)
T ss_pred CCEEEeecCHH
Confidence 59999998764
No 104
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=341.83 Aligned_cols=217 Identities=24% Similarity=0.365 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++
T Consensus 5 ~l~~~~l~~~~~~~----------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~ 72 (233)
T PRK11629 5 LLQCDNLCKRYQEG----------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQP 72 (233)
T ss_pred eEEEEeEEEEcCCC----------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 47899999987421 0114699999999999999999999999999999999998876 48999999988
Q ss_pred Ccccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCC
Q 000937 696 KIQET------F-VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768 (1218)
Q Consensus 696 ~~~~~------~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 768 (1218)
+.... . ++.++|++|+..+++.+|++||+.+..... .....+.+++++++++.+|+.+..++.+ .
T Consensus 73 i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (233)
T PRK11629 73 MSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----S 144 (233)
T ss_pred cCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----h
Confidence 64211 1 256999999998899999999998865432 1123334567889999999987766654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ....+|++++|. +|
T Consensus 145 ~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~--~~~~~~~~~~l~-~G 221 (233)
T PRK11629 145 ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ--LAKRMSRQLEMR-DG 221 (233)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhhCEEEEEE-CC
Confidence 7999999999999999999999999999999999999999999999976 5899999999974 345678998887 69
Q ss_pred EEEEEcCC
Q 000937 848 RIIYSGPL 855 (1218)
Q Consensus 848 ~~~~~g~~ 855 (1218)
+++..|+.
T Consensus 222 ~i~~~~~~ 229 (233)
T PRK11629 222 RLTAELSL 229 (233)
T ss_pred EEEEEecc
Confidence 99988875
No 105
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.2e-38 Score=340.06 Aligned_cols=192 Identities=30% Similarity=0.435 Sum_probs=163.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCC-CCCCCCHH
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDI-HSPHITIE 721 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~-~~~~lTv~ 721 (1218)
+++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+......++.++|++|++. .+..+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 4699999999999999999999999999999999998876 48999999988643344567999999964 34568999
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000937 722 ESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801 (1218)
Q Consensus 722 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD 801 (1218)
||+.+..... . ...++++++++.+++.+..++.+ .+||||||||++|||+|+.+|++++|||||+|||
T Consensus 91 e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754321 1 11245788999999987777664 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 802 ARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 802 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLA-NGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEC
Confidence 99999999999999878999999999985 5667899999997 58764
No 106
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=5.2e-38 Score=342.60 Aligned_cols=214 Identities=26% Similarity=0.436 Sum_probs=180.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++. +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 66 (220)
T cd03263 1 LQIRNLTKTYKK------------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSI 66 (220)
T ss_pred CEEEeeEEEeCC------------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEec
Confidence 357888887731 114699999999999999999999999999999999999876 489999999885
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
.. ...++.++|++|++.+++.+|++||+.+...... ....+..++++++++.+++.+..++.+ .+|||||
T Consensus 67 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (220)
T cd03263 67 RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGM 138 (220)
T ss_pred ccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHH
Confidence 42 2345679999999988889999999988654331 122333456788999999987766654 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcC
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 854 (1218)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|+++++. +|+++..|+
T Consensus 139 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~ 215 (220)
T cd03263 139 KRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMS-DGKLRCIGS 215 (220)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecCC
Confidence 9999999999999999999999999999999999999999876 599999999985 5667899999997 599999887
Q ss_pred C
Q 000937 855 L 855 (1218)
Q Consensus 855 ~ 855 (1218)
+
T Consensus 216 ~ 216 (220)
T cd03263 216 P 216 (220)
T ss_pred H
Confidence 5
No 107
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-38 Score=344.30 Aligned_cols=217 Identities=21% Similarity=0.317 Sum_probs=181.6
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|+++
T Consensus 2 i~~~~l~~~~~~~----------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 69 (233)
T cd03258 2 IELKNVSKVFGDT----------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDL 69 (233)
T ss_pred eEEecceEEccCC----------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 5688888877420 0113799999999999999999999999999999999999876 489999999985
Q ss_pred ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
... ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..+... ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (233)
T cd03258 70 TLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQL 141 (233)
T ss_pred ccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhC
Confidence 421 124679999999999999999999988654321 223334556788999999987766654 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i 219 (233)
T cd03258 142 SGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVME-KGEV 219 (233)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999775 899999999975 5667899999997 6999
Q ss_pred EEEcCC
Q 000937 850 IYSGPL 855 (1218)
Q Consensus 850 ~~~g~~ 855 (1218)
+..|+.
T Consensus 220 ~~~~~~ 225 (233)
T cd03258 220 VEEGTV 225 (233)
T ss_pred EEecCH
Confidence 998875
No 108
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.4e-37 Score=343.70 Aligned_cols=215 Identities=23% Similarity=0.358 Sum_probs=181.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 l~~~~l~~~~~--------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 65 (240)
T PRK09493 2 IEFKNVSKHFG--------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI--TSGDLIVDGLKV 65 (240)
T ss_pred EEEEeEEEEEC--------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 57889988773 24699999999999999999999999999999999998876 489999999885
Q ss_pred cc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 697 IQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 697 ~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
.. ...++.++|++|++.+++.+||+||+.+...... .....+..+.+.++++.+|+.+..+..+ +.||
T Consensus 66 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS 138 (240)
T PRK09493 66 NDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELS 138 (240)
T ss_pred CcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcC
Confidence 42 1235679999999989999999999987642111 1223334556788999999987666654 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 139 ~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~ 216 (240)
T PRK09493 139 GGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFID-KGRIAE 216 (240)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEe
Confidence 99999999999999999999999999999999999999999999877999999999985 5667799999997 599999
Q ss_pred EcCCC
Q 000937 852 SGPLG 856 (1218)
Q Consensus 852 ~g~~~ 856 (1218)
.|+.+
T Consensus 217 ~g~~~ 221 (240)
T PRK09493 217 DGDPQ 221 (240)
T ss_pred eCCHH
Confidence 98753
No 109
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=351.44 Aligned_cols=219 Identities=23% Similarity=0.350 Sum_probs=181.6
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|+.+| .+|+|.++|.+.
T Consensus 3 l~~~~l~~~y~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13637 3 IKIENLTHIYMEGT---------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEEECCCCC---------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 78999999874210 0124699999999999999999999999999999999999877 489999999886
Q ss_pred cc-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC--ccccccccCCCCC
Q 000937 697 IQ-----ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD--GIKESLVGIPGVS 768 (1218)
Q Consensus 697 ~~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~~~~~~~ 768 (1218)
.. ...++.+||++|++. .+...||+||+.+..... ....++..++++++++.+||. +..++.+ +
T Consensus 72 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~ 143 (287)
T PRK13637 72 TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----F 143 (287)
T ss_pred CCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----c
Confidence 43 134567999999863 334579999999865432 223444556788999999996 5555553 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.++|++++++ |+|||++||+++ ++.+.+|++++|. +|
T Consensus 144 ~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~-~G 221 (287)
T PRK13637 144 ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMN-KG 221 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 89999999999999999999999999999999999999999999999875 999999999975 5667899999998 59
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
++++.|+++
T Consensus 222 ~i~~~g~~~ 230 (287)
T PRK13637 222 KCELQGTPR 230 (287)
T ss_pred EEEEECCHH
Confidence 999999863
No 110
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=344.28 Aligned_cols=212 Identities=27% Similarity=0.401 Sum_probs=179.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.
T Consensus 2 l~~~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 65 (255)
T PRK11248 2 LQISHLYADYG--------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPV 65 (255)
T ss_pred EEEEEEEEEeC--------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 57889988773 24699999999999999999999999999999999999876 489999999886
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 697 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
.. ..+.++|++|++.+++.+||.||+.+....+ .....+..++++++++.+++.+..++.+ .+|||||||
T Consensus 66 ~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~q 135 (255)
T PRK11248 66 EG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQ 135 (255)
T ss_pred CC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHH
Confidence 43 2245899999998889999999998764332 1223334456888999999987666553 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEEcC
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKT-GGRIIYSGP 854 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~~~~g~ 854 (1218)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++...+|++++|.+ +|+++..++
T Consensus 136 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 136 RVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLP 214 (255)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEec
Confidence 99999999999999999999999999999999999999854 5899999999985 56788999999974 599998876
Q ss_pred C
Q 000937 855 L 855 (1218)
Q Consensus 855 ~ 855 (1218)
.
T Consensus 215 ~ 215 (255)
T PRK11248 215 L 215 (255)
T ss_pred C
Confidence 5
No 111
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4.9e-38 Score=348.29 Aligned_cols=218 Identities=24% Similarity=0.322 Sum_probs=179.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.+. .++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++
T Consensus 2 l~~~~l~~~~~-------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 66 (243)
T TIGR02315 2 LEVENLSKVYP-------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDI 66 (243)
T ss_pred eEEEeeeeecC-------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEh
Confidence 56788887763 124699999999999999999999999999999999999876 489999999875
Q ss_pred cc------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhcc-----CCCCChhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 697 IQ------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRL-----APQINSKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 697 ~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
.. ...++.++|++|++.+++.+||+||+.++..... .......+..++++++++.+++.+..+..+
T Consensus 67 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 143 (243)
T TIGR02315 67 TKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA--- 143 (243)
T ss_pred hhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc---
Confidence 32 1235679999999999999999999976431100 000112233456788999999987666653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.
T Consensus 144 --~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~ 220 (243)
T TIGR02315 144 --DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLK 220 (243)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE
Confidence 579999999999999999999999999999999999999999999999764 899999999985 5667899999997
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|+++
T Consensus 221 -~G~i~~~~~~~ 231 (243)
T TIGR02315 221 -AGEIVFDGAPS 231 (243)
T ss_pred -CCEEEecCCHH
Confidence 59999888764
No 112
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1e-37 Score=338.74 Aligned_cols=207 Identities=26% Similarity=0.370 Sum_probs=174.4
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 l~~~~l~~~~~-------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 66 (214)
T TIGR02673 2 IEFHNVSKAYP-------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDV 66 (214)
T ss_pred EEEEeeeEEeC-------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 57888888773 124699999999999999999999999999999999998876 489999999876
Q ss_pred ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
... ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.+ ..|
T Consensus 67 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 138 (214)
T TIGR02673 67 NRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQL 138 (214)
T ss_pred ccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 234679999999998999999999988754321 223334466788999999987666554 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+
T Consensus 139 S~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~-~G~ 214 (214)
T TIGR02673 139 SGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILD-DGR 214 (214)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEec-CCC
Confidence 999999999999999999999999999999999999999999999877999999999985 5667899999997 453
No 113
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-38 Score=353.96 Aligned_cols=220 Identities=23% Similarity=0.346 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++... .....+|+|+|++|++||+++|+||||||||||+++|+|..+|. +|+|.++|.+
T Consensus 2 ~i~~~~l~~~y~~~~---------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~--~G~i~~~g~~ 70 (305)
T PRK13651 2 QIKVKNIVKIFNKKL---------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD--TGTIEWIFKD 70 (305)
T ss_pred EEEEEEEEEEECCCC---------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEEecee
Confidence 378999999885210 01236999999999999999999999999999999999998874 8999999875
Q ss_pred Cc---------------------------cccccceEEEeccCC-CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHH
Q 000937 696 KI---------------------------QETFVRVSGYCEQTD-IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNH 747 (1218)
Q Consensus 696 ~~---------------------------~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 747 (1218)
.. ....++.+|||+|++ ..+...||+||+.|+.... ....++..+++++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~ 147 (305)
T PRK13651 71 EKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAK 147 (305)
T ss_pred cccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHH
Confidence 31 012356799999985 3445679999999875432 2234455567889
Q ss_pred HHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Q 000937 748 VLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTI 826 (1218)
Q Consensus 748 ~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~ 826 (1218)
+++.+||. +..++.. ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|
T Consensus 148 ~l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivt 222 (305)
T PRK13651 148 YIELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVT 222 (305)
T ss_pred HHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 99999996 5666553 58999999999999999999999999999999999999999999999987799999999
Q ss_pred cCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 827 HQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 827 H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
|+++ ++.+.+|++++|. +|++++.|+++
T Consensus 223 Hd~~-~~~~~adrv~vl~-~G~i~~~g~~~ 250 (305)
T PRK13651 223 HDLD-NVLEWTKRTIFFK-DGKIIKDGDTY 250 (305)
T ss_pred eCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 9975 5678899999997 69999999864
No 114
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1e-37 Score=338.97 Aligned_cols=206 Identities=25% Similarity=0.342 Sum_probs=173.7
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.++.
T Consensus 2 ~~~~l~~~~~~-------------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 66 (214)
T cd03292 2 EFINVTKTYPN-------------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVS 66 (214)
T ss_pred EEEEEEEEeCC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 57788887731 24699999999999999999999999999999999998776 4899999998753
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 698 QE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 698 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
.. ..++.++|++|++.+++.+|++||+.+....+. ...++..++++++++.+++.+..++.+ .+||
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (214)
T cd03292 67 DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELS 138 (214)
T ss_pred cCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcC
Confidence 21 235679999999999999999999988754321 223334456788999999987766654 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|. +|+
T Consensus 139 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~-~G~ 213 (214)
T cd03292 139 GGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALE-RGK 213 (214)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCc
Confidence 99999999999999999999999999999999999999999999777999999999975 5566799999997 475
No 115
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.1e-37 Score=340.79 Aligned_cols=210 Identities=27% Similarity=0.419 Sum_probs=175.5
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ ++++++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (222)
T cd03224 2 EVENLNAGYG--------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDIT 65 (222)
T ss_pred EEeeEEeecC--------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcC
Confidence 5788887663 24699999999999999999999999999999999999876 4899999998754
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHc-CCCccccccccCCCCCCCCH
Q 000937 698 QE---T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI-ELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 698 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~LSg 772 (1218)
.. . .++.++|++|++.+++.+|++||+.+...... ..+..+.++++++.+ ++.+..++.+ ++|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~ 135 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSG 135 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCH
Confidence 21 1 24569999999999999999999988654321 122334566777777 4665555543 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++..
T Consensus 136 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~ 213 (222)
T cd03224 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLE-RGRVVLE 213 (222)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEee-CCeEEEe
Confidence 9999999999999999999999999999999999999999999877999999999975 5678899999997 5999988
Q ss_pred cCC
Q 000937 853 GPL 855 (1218)
Q Consensus 853 g~~ 855 (1218)
|+.
T Consensus 214 ~~~ 216 (222)
T cd03224 214 GTA 216 (222)
T ss_pred CCH
Confidence 875
No 116
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.7e-37 Score=348.11 Aligned_cols=216 Identities=21% Similarity=0.327 Sum_probs=182.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+
T Consensus 7 ~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 70 (269)
T PRK11831 7 LVDMRGVSFTRG--------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGEN 70 (269)
T ss_pred eEEEeCeEEEEC--------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEE
Confidence 478999998873 24699999999999999999999999999999999999876 48999999987
Q ss_pred Cccc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000937 696 KIQE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769 (1218)
Q Consensus 696 ~~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 769 (1218)
+... ..++.++|++|+..+++.+||.||+.+...... ........+.+.++++.+++.+..+..+ ..
T Consensus 71 i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 143 (269)
T PRK11831 71 IPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SE 143 (269)
T ss_pred ccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hh
Confidence 5321 124569999999989999999999987643211 1122333456778899999987777654 47
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 770 LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|++++|. +|+
T Consensus 144 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~-~G~ 221 (269)
T PRK11831 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVA-DKK 221 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999765 899999999975 5677899999997 699
Q ss_pred EEEEcCCC
Q 000937 849 IIYSGPLG 856 (1218)
Q Consensus 849 ~~~~g~~~ 856 (1218)
+++.|+++
T Consensus 222 i~~~g~~~ 229 (269)
T PRK11831 222 IVAHGSAQ 229 (269)
T ss_pred EEEeCCHH
Confidence 99998763
No 117
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-37 Score=343.63 Aligned_cols=213 Identities=24% Similarity=0.379 Sum_probs=179.6
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 66 (242)
T cd03295 2 EFENVTKRYGG-------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIR 66 (242)
T ss_pred EEEEEEEEeCC-------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcC
Confidence 57788887631 14699999999999999999999999999999999998876 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc--cccccccCCCCCCCCH
Q 000937 698 Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG--IKESLVGIPGVSGLST 772 (1218)
Q Consensus 698 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~LSg 772 (1218)
. ...++.++|++|++.+++.+||+||+.+..... ........+.++++++.+++.+ ..++.+ ++|||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~ 138 (242)
T cd03295 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSG 138 (242)
T ss_pred cCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCH
Confidence 2 233567899999999999999999998865432 1223334556788999999985 555543 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 139 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~ 216 (242)
T cd03295 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMK-NGEIVQ 216 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999865 899999999985 5677899999997 599999
Q ss_pred EcCC
Q 000937 852 SGPL 855 (1218)
Q Consensus 852 ~g~~ 855 (1218)
.|++
T Consensus 217 ~~~~ 220 (242)
T cd03295 217 VGTP 220 (242)
T ss_pred ecCH
Confidence 8875
No 118
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=348.53 Aligned_cols=215 Identities=26% Similarity=0.349 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 68 (274)
T PRK13647 4 IIEVEDLHFRYKD-------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGRE 68 (274)
T ss_pred eEEEEEEEEEeCC-------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 4789999988741 23699999999999999999999999999999999999876 48999999988
Q ss_pred Ccc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
... ...++.++|++|++. .++..||.||+.|..... ........++++++++.++|.+..++.+ .+||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 140 (274)
T PRK13647 69 VNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLS 140 (274)
T ss_pred CCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCC
Confidence 643 223467999999863 455689999998864321 1223344456888999999987777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|. +|++++
T Consensus 141 gG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~ 218 (274)
T PRK13647 141 YGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLK-EGRVLA 218 (274)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 4667899999997 699999
Q ss_pred EcCC
Q 000937 852 SGPL 855 (1218)
Q Consensus 852 ~g~~ 855 (1218)
.|++
T Consensus 219 ~g~~ 222 (274)
T PRK13647 219 EGDK 222 (274)
T ss_pred ECCH
Confidence 9986
No 119
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2.1e-37 Score=344.61 Aligned_cols=214 Identities=26% Similarity=0.370 Sum_probs=180.8
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++.
T Consensus 4 l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (250)
T PRK11264 4 IEVKNLVKKFH--------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITI 67 (250)
T ss_pred EEEeceEEEEC--------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEc
Confidence 68899998873 23699999999999999999999999999999999998876 489999999875
Q ss_pred cc-----------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 697 IQ-----------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 697 ~~-----------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
.. ...++.++|++|++.+++.+|+.||+.++..... ........++++++++.+++.+..+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~--- 142 (250)
T PRK11264 68 DTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP--- 142 (250)
T ss_pred cccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh---
Confidence 32 1234579999999989999999999987543111 1223334556788999999987666553
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.
T Consensus 143 --~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~- 218 (250)
T PRK11264 143 --RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMD- 218 (250)
T ss_pred --hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-
Confidence 579999999999999999999999999999999999999999999999877999999999975 5667899999997
Q ss_pred CCEEEEEcCC
Q 000937 846 GGRIIYSGPL 855 (1218)
Q Consensus 846 ~G~~~~~g~~ 855 (1218)
+|++++.|+.
T Consensus 219 ~G~i~~~~~~ 228 (250)
T PRK11264 219 QGRIVEQGPA 228 (250)
T ss_pred CCEEEEeCCH
Confidence 5999998875
No 120
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-37 Score=351.24 Aligned_cols=218 Identities=25% Similarity=0.343 Sum_probs=181.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++... ...+.+|+|+|++|++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 2 i~~~~v~~~y~~~~---------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i 70 (288)
T PRK13643 2 IKFEKVNYTYQPNS---------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT--EGKVTVGDIVV 70 (288)
T ss_pred EEEEEEEEEeCCCC---------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 67899999885210 01235999999999999999999999999999999999998774 89999999986
Q ss_pred cc-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCC
Q 000937 697 IQ-------ETFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPG 766 (1218)
Q Consensus 697 ~~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 766 (1218)
.. ...++.+|||+|++ .+++ .||.||+.|+.... .....+..+++.++++.++|. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~----- 141 (288)
T PRK13643 71 SSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS----- 141 (288)
T ss_pred ccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----
Confidence 31 12456799999986 4444 69999999875432 123444566788999999995 455554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +
T Consensus 142 ~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~-~ 219 (288)
T PRK13643 142 PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLE-K 219 (288)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-C
Confidence 3589999999999999999999999999999999999999999999999877999999999975 5667899999998 5
Q ss_pred CEEEEEcCCC
Q 000937 847 GRIIYSGPLG 856 (1218)
Q Consensus 847 G~~~~~g~~~ 856 (1218)
|++++.|+++
T Consensus 220 G~i~~~g~~~ 229 (288)
T PRK13643 220 GHIISCGTPS 229 (288)
T ss_pred CEEEEECCHH
Confidence 9999999874
No 121
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-37 Score=342.92 Aligned_cols=207 Identities=21% Similarity=0.304 Sum_probs=177.7
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.
T Consensus 11 ~~l~i~~l~~~~~--------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~ 74 (257)
T PRK11247 11 TPLLLNAVSKRYG--------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTA 74 (257)
T ss_pred CcEEEEEEEEEEC--------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCE
Confidence 3488999999883 24699999999999999999999999999999999999876 4899999997
Q ss_pred eCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 695 PKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 695 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
+.. ..++.++|++|++.+++.+||+||+.+... . ...++++++++.+++.+..+..+ ..|||||
T Consensus 75 ~~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~--------~-~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 138 (257)
T PRK11247 75 PLA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK--------G-QWRDAALQALAAVGLADRANEWP-----AALSGGQ 138 (257)
T ss_pred EHH--HhhCceEEEecCccCCCCCcHHHHHHhccc--------c-hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHH
Confidence 753 245679999999988898999999987421 0 12345778899999987666654 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 139 kqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~-~G~i~~~~ 216 (257)
T PRK11247 139 KQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIE-EGKIGLDL 216 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeec
Confidence 9999999999999999999999999999999999999999865 4899999999975 5667899999998 58999887
Q ss_pred CC
Q 000937 854 PL 855 (1218)
Q Consensus 854 ~~ 855 (1218)
+.
T Consensus 217 ~~ 218 (257)
T PRK11247 217 TV 218 (257)
T ss_pred cc
Confidence 65
No 122
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-37 Score=350.26 Aligned_cols=219 Identities=21% Similarity=0.314 Sum_probs=180.9
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++... ...+++|+|||++|++||+++|+||||||||||+++|+|+.+|. +|+|.++|+++
T Consensus 3 l~~~~l~~~y~~~~---------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i 71 (290)
T PRK13634 3 ITFQKVEHRYQYKT---------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT--SGTVTIGERVI 71 (290)
T ss_pred EEEEEEEEEECCCC---------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 68999999984210 01246999999999999999999999999999999999998764 89999999976
Q ss_pred cc-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000937 697 IQ-------ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGV 767 (1218)
Q Consensus 697 ~~-------~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 767 (1218)
.. ...++.+||++|++. .+...||+||+.|+.... .....+..++++++++.++|. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (290)
T PRK13634 72 TAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP----- 143 (290)
T ss_pred ccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----
Confidence 31 134567999999852 333579999999875422 123334456788999999996 5556553
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.++|++++++ |.|||++||+++ ++.+.+|++++|. +
T Consensus 144 ~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~ 221 (290)
T PRK13634 144 FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-K 221 (290)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 589999999999999999999999999999999999999999999999765 999999999985 5778899999997 6
Q ss_pred CEEEEEcCCC
Q 000937 847 GRIIYSGPLG 856 (1218)
Q Consensus 847 G~~~~~g~~~ 856 (1218)
|++++.|+++
T Consensus 222 G~i~~~g~~~ 231 (290)
T PRK13634 222 GTVFLQGTPR 231 (290)
T ss_pred CEEEEECCHH
Confidence 9999999863
No 123
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-37 Score=349.04 Aligned_cols=203 Identities=22% Similarity=0.322 Sum_probs=173.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc---c----ccceEEEeccCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE---T----FVRVSGYCEQTDIH 714 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~~ 714 (1218)
.+.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+.... . .++.++|++|++.+
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 45799999999999999999999999999999999999876 489999999875321 1 13569999999999
Q ss_pred CCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000937 715 SPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMD 794 (1218)
Q Consensus 715 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllD 794 (1218)
++.+||+||+.+...... .......++++++++.+++.+..++.+ .+||||||||++||++|+.+|++|+||
T Consensus 114 ~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 114 LPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred CCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999988654321 123334456788999999987777664 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 795 EPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 795 EPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
|||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|+++
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~-~G~i~~~g~~~ 246 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMK-DGRLVQVGTPE 246 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999999999765 899999999975 5677899999997 69999988753
No 124
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-37 Score=307.25 Aligned_cols=201 Identities=27% Similarity=0.423 Sum_probs=177.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHH
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEE 722 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 722 (1218)
..+|+|+|++|.+||.++++||||||||||||+++|..+|. .|+|.+||+++..... ..|.|+|++.++|.+||.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~--~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS--RGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc--cceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 46899999999999999999999999999999999998874 8999999998764322 3489999999999999999
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000937 723 SLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA 802 (1218)
Q Consensus 723 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~ 802 (1218)
|+.|+.+++. ..+.++.+++.+.+...||.+..++.+ -+|||||||||.|||||+.+|++|+||||+++||.
T Consensus 94 NvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 9999998874 457778888999999999998877664 48999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEEcCCC
Q 000937 803 RAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKT-GGRIIYSGPLG 856 (1218)
Q Consensus 803 ~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~~~~g~~~ 856 (1218)
-+++++.++|-++.+ .|+.++++||+.+ |..-+++++++|.. .||++..-+++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999998865 4999999999986 55567899999973 37888877763
No 125
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-37 Score=352.24 Aligned_cols=220 Identities=25% Similarity=0.350 Sum_probs=181.5
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++... ...+.+|+|+|++|++||+++|+||||||||||+++|+|+.+|. +|+|.++|.
T Consensus 20 ~~l~~~nl~~~y~~~~---------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~--~G~I~i~g~ 88 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ---------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK--YGTIQVGDI 88 (320)
T ss_pred ceEEEEeEEEEeCCCC---------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCE
Confidence 3589999999985210 01246999999999999999999999999999999999998874 899999998
Q ss_pred eCcc-------------------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcC
Q 000937 695 PKIQ-------------------ETFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE 753 (1218)
Q Consensus 695 ~~~~-------------------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 753 (1218)
+... ...++.++||+|++ .+++ .||+||+.|+.... ....++..++++++++.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~g 164 (320)
T PRK13631 89 YIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMG 164 (320)
T ss_pred EcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcC
Confidence 7532 12456799999986 3554 59999998865321 1233444567888999999
Q ss_pred CC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHH
Q 000937 754 LD-GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSID 832 (1218)
Q Consensus 754 l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~ 832 (1218)
+. +..++. +.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ +
T Consensus 165 L~~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~ 238 (320)
T PRK13631 165 LDDSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-H 238 (320)
T ss_pred CChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-H
Confidence 96 455544 3589999999999999999999999999999999999999999999999877999999999975 4
Q ss_pred HHHhhceEEEEecCCEEEEEcCCC
Q 000937 833 IFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 833 ~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
+.+.+|++++|. +|+++..|+++
T Consensus 239 ~~~~adri~vl~-~G~i~~~g~~~ 261 (320)
T PRK13631 239 VLEVADEVIVMD-KGKILKTGTPY 261 (320)
T ss_pred HHHhCCEEEEEE-CCEEEEeCCHH
Confidence 668899999998 59999999864
No 126
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.8e-37 Score=336.69 Aligned_cols=207 Identities=25% Similarity=0.388 Sum_probs=174.2
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (213)
T cd03262 2 EIKNLHKSFG--------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLT 65 (213)
T ss_pred EEEEEEEEEC--------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECC
Confidence 5788888773 24699999999999999999999999999999999998876 4899999998763
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 698 Q-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 698 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
. ...++.++|++|++.+++.+|+.||+.+...... ....++..++++++++.+++.+..++.+ .+|||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 138 (213)
T cd03262 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSG 138 (213)
T ss_pred ccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCH
Confidence 2 1245679999999999999999999988643111 1223334556788999999987666654 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++
T Consensus 139 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~-~g~i 213 (213)
T cd03262 139 GQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMD-DGRI 213 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCcC
Confidence 9999999999999999999999999999999999999999999877999999999985 5667899999997 4653
No 127
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.4e-37 Score=336.38 Aligned_cols=209 Identities=23% Similarity=0.300 Sum_probs=175.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 l~~~~l~~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i 66 (222)
T PRK10908 2 IRFEHVSKAYL-------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDI 66 (222)
T ss_pred EEEEeeEEEec-------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 57889988773 124699999999999999999999999999999999999876 489999999875
Q ss_pred cc---c---cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQ---E---TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~---~---~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
.. . ..++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.+++.+..++.+ ..|
T Consensus 67 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 138 (222)
T PRK10908 67 TRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQL 138 (222)
T ss_pred ccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhC
Confidence 32 1 13567999999998888999999998865432 1223333456778899999987666553 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++...+|++++|. +|+++
T Consensus 139 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~ 216 (222)
T PRK10908 139 SGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLS-DGHLH 216 (222)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEc
Confidence 999999999999999999999999999999999999999999999877999999999985 5667789999997 58875
No 128
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=343.17 Aligned_cols=216 Identities=23% Similarity=0.378 Sum_probs=182.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~--------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~ 66 (241)
T PRK10895 3 TLTAKNLAKAYK--------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDED 66 (241)
T ss_pred eEEEeCcEEEeC--------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEE
Confidence 367889888773 24699999999999999999999999999999999998876 48999999987
Q ss_pred Cccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
.... ..++.++|++|++.+++.+||.||+.+...... ....++..++++++++.+++.+..+... +.||
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (241)
T PRK10895 67 ISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLS 139 (241)
T ss_pred CCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCC
Confidence 5421 134579999999999999999999987643221 1222334556788999999987666553 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|. +|++++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~-~G~i~~ 217 (241)
T PRK10895 140 GGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVS-QGHLIA 217 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEe-CCeEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 6778899999997 699999
Q ss_pred EcCCC
Q 000937 852 SGPLG 856 (1218)
Q Consensus 852 ~g~~~ 856 (1218)
.|+++
T Consensus 218 ~~~~~ 222 (241)
T PRK10895 218 HGTPT 222 (241)
T ss_pred eCCHH
Confidence 88763
No 129
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.7e-37 Score=339.18 Aligned_cols=216 Identities=25% Similarity=0.344 Sum_probs=173.3
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++.. .+...+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|+++
T Consensus 2 l~~~~v~~~~~~~----------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 69 (228)
T cd03257 2 LEVKNLSVSFPTG----------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDL 69 (228)
T ss_pred eEEEeeeEeccCC----------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 5688998877421 0113699999999999999999999999999999999999876 489999999876
Q ss_pred cc------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHH-HHHHHHHcCCC-ccccccccCCC
Q 000937 697 IQ------ETFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADC-VNHVLKTIELD-GIKESLVGIPG 766 (1218)
Q Consensus 697 ~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~l~-~~~~~~~~~~~ 766 (1218)
.. ...++.++|++|++ .+++.+||+||+.+....... . ......+. ++++++.+++. +..+..+
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 143 (228)
T cd03257 70 LKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-L-SKKEARKEAVLLLLVGVGLPEEVLNRYP---- 143 (228)
T ss_pred cccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-C-cHHHHHHHHHHHHHHHCCCChhHhhCCc----
Confidence 42 13456799999998 466789999999876543211 1 11112222 35788889885 4555543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.
T Consensus 144 -~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~- 220 (228)
T cd03257 144 -HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMY- 220 (228)
T ss_pred -hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEe-
Confidence 479999999999999999999999999999999999999999999999876 899999999985 5566899999997
Q ss_pred CCEEEEEc
Q 000937 846 GGRIIYSG 853 (1218)
Q Consensus 846 ~G~~~~~g 853 (1218)
+|+++..|
T Consensus 221 ~G~i~~~g 228 (228)
T cd03257 221 AGKIVEEG 228 (228)
T ss_pred CCEEEecC
Confidence 58987654
No 130
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-37 Score=335.54 Aligned_cols=209 Identities=31% Similarity=0.506 Sum_probs=175.7
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+++|+|+++++| +++|+||||||||||+++|+|+.++ .+|+|.++|.+.
T Consensus 1 i~~~~~~~~~~--------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 63 (211)
T cd03264 1 LQLENLTKRYG--------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDV 63 (211)
T ss_pred CEEEEEEEEEC--------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCcc
Confidence 35788888773 236999999999999 9999999999999999999998876 489999999875
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
.. ...++.++|++|++.+++.+||.||+.+....+. ....+..+.++++++.+++.+..++.+ .+|||||
T Consensus 64 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 135 (211)
T cd03264 64 LKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGM 135 (211)
T ss_pred ccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHH
Confidence 32 2235679999999999999999999988654331 122333456788999999987766654 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++++|. +|+++..|
T Consensus 136 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~-~g~i~~~g 211 (211)
T cd03264 136 RRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 9999999999999999999999999999999999999999976 599999999975 4567899999997 58988654
No 131
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4.1e-37 Score=335.84 Aligned_cols=211 Identities=23% Similarity=0.354 Sum_probs=174.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 l~~~~v~~~~~~~----------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (221)
T TIGR02211 2 LKCENLGKRYQEG----------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSL 69 (221)
T ss_pred EEEEeeeEEccCC----------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEh
Confidence 5678888887421 0124699999999999999999999999999999999998876 489999999875
Q ss_pred ccc---c---cc-ceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000937 697 IQE---T---FV-RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769 (1218)
Q Consensus 697 ~~~---~---~~-~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 769 (1218)
... . ++ +.++|++|++.+++.+|++||+.+....+. ....+..+.+.++++.+|+.+..++.+ ..
T Consensus 70 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 141 (221)
T TIGR02211 70 SKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SE 141 (221)
T ss_pred hhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hh
Confidence 321 1 12 569999999988889999999988654321 122333456788999999987766654 47
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 770 LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ . .+.+|++++|. +|+
T Consensus 142 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~-~~~~d~v~~l~-~G~ 218 (221)
T TIGR02211 142 LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-L-AKKLDRVLEMK-DGQ 218 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEEEe-CCE
Confidence 9999999999999999999999999999999999999999999999764 899999999975 3 45689999997 587
Q ss_pred EE
Q 000937 849 II 850 (1218)
Q Consensus 849 ~~ 850 (1218)
++
T Consensus 219 i~ 220 (221)
T TIGR02211 219 LF 220 (221)
T ss_pred ec
Confidence 64
No 132
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.5e-37 Score=341.83 Aligned_cols=214 Identities=24% Similarity=0.325 Sum_probs=178.1
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVNG 693 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g 693 (1218)
++++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|..+|. ..+|+|.++|
T Consensus 2 l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g 67 (247)
T TIGR00972 2 IEIENLNLFYG--------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDG 67 (247)
T ss_pred EEEEEEEEEEC--------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECC
Confidence 57889988773 236999999999999999999999999999999999987652 1279999999
Q ss_pred EeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC----ccccccccC
Q 000937 694 YPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD----GIKESLVGI 764 (1218)
Q Consensus 694 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 764 (1218)
++... ...++.++|++|+..+++ +|+.||+.+....+. .....+..+.++++++.+++. +..+..
T Consensus 68 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 141 (247)
T TIGR00972 68 QDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS--- 141 (247)
T ss_pred EEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC---
Confidence 87642 123567999999988888 999999988654321 112334445678899999997 444444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 142 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 217 (247)
T TIGR00972 142 --ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFY 217 (247)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEE
Confidence 358999999999999999999999999999999999999999999999976 489999999975 5677899999998
Q ss_pred cCCEEEEEcCC
Q 000937 845 TGGRIIYSGPL 855 (1218)
Q Consensus 845 ~~G~~~~~g~~ 855 (1218)
+|+++..|++
T Consensus 218 -~G~i~~~~~~ 227 (247)
T TIGR00972 218 -DGELVEYGPT 227 (247)
T ss_pred -CCEEEEeCCH
Confidence 5999999875
No 133
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-37 Score=347.60 Aligned_cols=217 Identities=21% Similarity=0.332 Sum_probs=183.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++.. +.+.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 70 (279)
T PRK13650 4 IIEVKNLTFKYKED-----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDL 70 (279)
T ss_pred eEEEEeEEEEcCCC-----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 47899999988421 124599999999999999999999999999999999999877 48999999998
Q ss_pred Ccc---ccccceEEEeccCC-CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ---ETFVRVSGYCEQTD-IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
... ...++.++|++|++ ..++..||+||+.|+.... ....++..++++++++.+||.+..+..+ .+||
T Consensus 71 i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (279)
T PRK13650 71 LTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLS 142 (279)
T ss_pred CCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 642 23456799999997 3677889999998865322 2234445567889999999987777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..+|++++|. +|+++
T Consensus 143 gGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~-~G~i~ 219 (279)
T PRK13650 143 GGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMK-NGQVE 219 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999875 999999999975 34 6799999997 69999
Q ss_pred EEcCCC
Q 000937 851 YSGPLG 856 (1218)
Q Consensus 851 ~~g~~~ 856 (1218)
..|+++
T Consensus 220 ~~g~~~ 225 (279)
T PRK13650 220 STSTPR 225 (279)
T ss_pred EECCHH
Confidence 999863
No 134
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=4.6e-37 Score=342.85 Aligned_cols=215 Identities=23% Similarity=0.305 Sum_probs=180.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 5 ~l~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~ 68 (257)
T PRK10619 5 KLNVIDLHKRYG--------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQT 68 (257)
T ss_pred cEEEeeeEEEEC--------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEE
Confidence 478999999873 24699999999999999999999999999999999999876 48999999987
Q ss_pred Ccc----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccc-
Q 000937 696 KIQ----------------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK- 758 (1218)
Q Consensus 696 ~~~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~- 758 (1218)
... ..+++.++|++|++.+++.+||+||+.++..... ........+++.++++.+|+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 69 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred cccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 531 1235679999999999999999999987542111 122334456678899999997653
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhc
Q 000937 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFD 838 (1218)
Q Consensus 759 ~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d 838 (1218)
+.. +.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|
T Consensus 147 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 443 3589999999999999999999999999999999999999999999999877999999999975 5666799
Q ss_pred eEEEEecCCEEEEEcCC
Q 000937 839 ELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 839 ~~~~l~~~G~~~~~g~~ 855 (1218)
+++++. +|++++.|+.
T Consensus 221 ~i~~l~-~G~i~~~~~~ 236 (257)
T PRK10619 221 HVIFLH-QGKIEEEGAP 236 (257)
T ss_pred EEEEEE-CCEEEEeCCH
Confidence 999997 5999998875
No 135
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-37 Score=341.09 Aligned_cols=213 Identities=21% Similarity=0.355 Sum_probs=178.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+
T Consensus 5 ~l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~ 68 (237)
T PRK11614 5 MLSFDKVSAHYG--------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKD 68 (237)
T ss_pred EEEEEeEEEeeC--------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEe
Confidence 478999998873 24699999999999999999999999999999999999876 48999999987
Q ss_pred Cccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHc-CCCccccccccCCCCCCC
Q 000937 696 KIQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI-ELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 696 ~~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~L 770 (1218)
.... ..++.++|++|+..+++.+||.||+.++.... ......+.++++++.+ ++.+..+.. +..|
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~L 138 (237)
T PRK11614 69 ITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTM 138 (237)
T ss_pred cCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhC
Confidence 5431 13457999999999999999999998754211 1122234466677777 465544443 3579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 139 S~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~ 216 (237)
T PRK11614 139 SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLE-NGHVV 216 (237)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEe-CCEEE
Confidence 999999999999999999999999999999999999999999999878999999999975 5788999999998 59999
Q ss_pred EEcCCC
Q 000937 851 YSGPLG 856 (1218)
Q Consensus 851 ~~g~~~ 856 (1218)
+.|+++
T Consensus 217 ~~~~~~ 222 (237)
T PRK11614 217 LEDTGD 222 (237)
T ss_pred eeCCHH
Confidence 999864
No 136
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=7.4e-37 Score=336.85 Aligned_cols=212 Identities=26% Similarity=0.449 Sum_probs=178.2
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++
T Consensus 2 l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i 65 (236)
T TIGR03864 2 LEVAGLSFAYG--------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDL 65 (236)
T ss_pred EEEEeeEEEEC--------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEc
Confidence 56788888773 24699999999999999999999999999999999999876 489999999875
Q ss_pred ccc--cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQE--TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~~--~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
... ...+.++|++|++.+++.+|++||+.+....+ ........+.++++++.+|+.+..++.+ ..|||||
T Consensus 66 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~ 137 (236)
T TIGR03864 66 RRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGH 137 (236)
T ss_pred ccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHH
Confidence 321 22356999999988888999999998765432 1223334456788999999987766654 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|+|++||+++ ++ ..+|++++|. +|+++..|
T Consensus 138 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~-~G~i~~~~ 214 (236)
T TIGR03864 138 RRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLH-RGRVLADG 214 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEe-CCeEEEeC
Confidence 9999999999999999999999999999999999999999975 5899999999986 34 4699999997 58999888
Q ss_pred CC
Q 000937 854 PL 855 (1218)
Q Consensus 854 ~~ 855 (1218)
++
T Consensus 215 ~~ 216 (236)
T TIGR03864 215 AA 216 (236)
T ss_pred CH
Confidence 75
No 137
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1e-37 Score=301.46 Aligned_cols=213 Identities=25% Similarity=0.393 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.++++.++... .+...||++|++.|++||-+||+|||||||||||-+++|+..+. +|+|.+.|++
T Consensus 6 ii~~~~l~ktvg~~----------~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s--sGeV~l~G~~ 73 (228)
T COG4181 6 IIEVHHLSKTVGQG----------EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQP 73 (228)
T ss_pred eeehhhhhhhhcCC----------CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC--CceEEEcCcc
Confidence 35677777766432 24568999999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---c---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCC
Q 000937 696 KIQ---E---T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768 (1218)
Q Consensus 696 ~~~---~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 768 (1218)
... + . ..+.+|+|+|...+.|+||..||+...+.++... .....+.+.+.++.+||.+..+... .
T Consensus 74 L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~Rl~HyP-----~ 145 (228)
T COG4181 74 LHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES---SADSRAGAKALLEAVGLGKRLTHYP-----A 145 (228)
T ss_pred hhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHhCcccccccCc-----c
Confidence 532 1 1 3467999999999999999999999988776421 2233456788999999987766653 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
+|||||+|||+||||++..|++||.||||-+||..+..+|.++|-.+.+ .|.|.|++|||| .+...|+|.+-|. .|
T Consensus 146 qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~-~G 222 (228)
T COG4181 146 QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLR-SG 222 (228)
T ss_pred ccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeee-cc
Confidence 8999999999999999999999999999999999999999999999865 499999999997 4688999999998 58
Q ss_pred EEEE
Q 000937 848 RIIY 851 (1218)
Q Consensus 848 ~~~~ 851 (1218)
+++.
T Consensus 223 ~l~~ 226 (228)
T COG4181 223 RLVE 226 (228)
T ss_pred eecc
Confidence 8864
No 138
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-37 Score=346.12 Aligned_cols=216 Identities=25% Similarity=0.372 Sum_probs=182.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 5 ~l~~~~l~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~ 69 (283)
T PRK13636 5 ILKVEELNYNYSD-------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKP 69 (283)
T ss_pred eEEEEeEEEEeCC-------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEE
Confidence 5889999998831 24699999999999999999999999999999999999876 48999999988
Q ss_pred Ccc-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000937 696 KIQ-----ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769 (1218)
Q Consensus 696 ~~~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 769 (1218)
... ...++.++|++|++. .+...||+||+.+..... ..+..+..++++++++.++|.+..++.. +.
T Consensus 70 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 141 (283)
T PRK13636 70 IDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HC 141 (283)
T ss_pred CCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----cc
Confidence 631 234567999999863 345689999998864322 1233444567889999999988777664 58
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 770 LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+
T Consensus 142 LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~-~G~ 219 (283)
T PRK13636 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMK-EGR 219 (283)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999875 999999999975 4566899999997 589
Q ss_pred EEEEcCCC
Q 000937 849 IIYSGPLG 856 (1218)
Q Consensus 849 ~~~~g~~~ 856 (1218)
+++.|+++
T Consensus 220 i~~~g~~~ 227 (283)
T PRK13636 220 VILQGNPK 227 (283)
T ss_pred EEEeCCHH
Confidence 99999864
No 139
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-37 Score=347.17 Aligned_cols=219 Identities=23% Similarity=0.355 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++... ...+.+|+|||++|++||+++|+||||||||||+++|+|..+|. +|+|.++|.+
T Consensus 2 ~l~~~~l~~~y~~~~---------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~--~G~i~~~g~~ 70 (286)
T PRK13646 2 TIRFDNVSYTYQKGT---------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT--TGTVTVDDIT 70 (286)
T ss_pred EEEEEEEEEEECCCC---------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEE
Confidence 378999999884210 01246999999999999999999999999999999999998774 8999999988
Q ss_pred Ccc-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCC
Q 000937 696 KIQ-------ETFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIP 765 (1218)
Q Consensus 696 ~~~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 765 (1218)
+.. ...++.+||++|++ .+++ .||.||+.|+.... .....+..++++++++.+||. +..++.
T Consensus 71 i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~---- 142 (286)
T PRK13646 71 ITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS---- 142 (286)
T ss_pred CccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC----
Confidence 632 13456799999985 3444 59999999865322 123344556788999999996 555654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.
T Consensus 143 -~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~ 220 (286)
T PRK13646 143 -PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMK 220 (286)
T ss_pred -cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 3589999999999999999999999999999999999999999999999764 999999999975 5667899999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|++.
T Consensus 221 -~G~i~~~g~~~ 231 (286)
T PRK13646 221 -EGSIVSQTSPK 231 (286)
T ss_pred -CCEEEEECCHH
Confidence 59999999863
No 140
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=5.3e-37 Score=335.11 Aligned_cols=209 Identities=22% Similarity=0.375 Sum_probs=178.4
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+..
T Consensus 2 ~l~~v~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~ 65 (223)
T TIGR03740 2 ETKNLSKRFG--------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWT 65 (223)
T ss_pred EEEeEEEEEC--------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecc
Confidence 5778887763 24699999999999999999999999999999999998876 4899999998754
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000937 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKR 777 (1218)
Q Consensus 698 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqR 777 (1218)
... .+.++|++|++.+++.+|++||+.+....+. . ..+.+.++++.+++.+..+..+ ..||||||||
T Consensus 66 ~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~r 132 (223)
T TIGR03740 66 RKD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---L----PDSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQR 132 (223)
T ss_pred ccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---C----CHHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHH
Confidence 322 2568999999988999999999987654321 1 1235678899999987776654 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 778 LTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 778 v~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++..|++.+
T Consensus 133 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~~ 210 (223)
T TIGR03740 133 LGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIIS-EGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEe-CCEEEEecChhh
Confidence 99999999999999999999999999999999999999877999999999985 5667899999997 599999998753
No 141
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-37 Score=339.36 Aligned_cols=215 Identities=23% Similarity=0.344 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~ 65 (242)
T PRK11124 2 SIQLNGINCFYG--------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNH 65 (242)
T ss_pred EEEEEeeEEEEC--------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEe
Confidence 367899998873 24699999999999999999999999999999999999876 48999999987
Q ss_pred Cc------c---ccccceEEEeccCCCCCCCCCHHHHHHHHH-hhccCCCCChhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 696 KI------Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSA-WLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 696 ~~------~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
.. . ...++.++|++|++.+++.+||.||+.+.. ... .....+..+.+.++++.+|+.+..+..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~--- 139 (242)
T PRK11124 66 FDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP--- 139 (242)
T ss_pred cccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh---
Confidence 52 0 123457999999999999999999997532 211 1122333456788999999987766654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|+++ ++.+.+|++++|.
T Consensus 140 --~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~- 215 (242)
T PRK11124 140 --LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYME- 215 (242)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-
Confidence 479999999999999999999999999999999999999999999999877999999999985 5567899999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|++++.|+.+
T Consensus 216 ~g~i~~~~~~~ 226 (242)
T PRK11124 216 NGHIVEQGDAS 226 (242)
T ss_pred CCEEEEeCCHH
Confidence 59999988753
No 142
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2e-37 Score=336.06 Aligned_cols=199 Identities=26% Similarity=0.447 Sum_probs=164.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCC--CCCCH
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHS--PHITI 720 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~lTv 720 (1218)
+.+++|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|++.. ..++.++|++|++.+. +.+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 4699999999999999999999999999999999998876 4899999998753 2456799999997663 34899
Q ss_pred HHHHHHHHhhccCC-CCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000937 721 EESLFFSAWLRLAP-QINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799 (1218)
Q Consensus 721 ~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsg 799 (1218)
+||+.+........ ....+...++++++++.+++.+..++.+ .+||||||||++||++|+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 99998754321100 0112233456788999999987666654 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 800 LDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 800 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +| +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLN-RT-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEc-Cc-EeecC
Confidence 9999999999999999878999999999975 5667899999996 45 55544
No 143
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=7.7e-37 Score=349.78 Aligned_cols=231 Identities=20% Similarity=0.258 Sum_probs=185.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++||++.++........ +...+...+++|||++|++||+++|+|+||||||||+++|+|+.++ .+|+|.++|+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~-~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~ 83 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWF-WQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGK 83 (331)
T ss_pred ceEEEeCeEEEECCCCccccc-cccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCE
Confidence 458999999988532110000 0001235799999999999999999999999999999999999876 4899999999
Q ss_pred eCccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCC
Q 000937 695 PKIQE------TFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIP 765 (1218)
Q Consensus 695 ~~~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 765 (1218)
++... ..++.++||+|++ .++|.+||.||+.+...... ...+.++..++++++++.+++. +..++.
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~---- 158 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY---- 158 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC----
Confidence 86421 2356799999997 57889999999988654321 1133445566788999999994 344544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
+.+|||||||||+||+||+.+|++|++||||+|||+.++.+++++|+++.++ |.|+|++|||++ .+.+.+|++++|.
T Consensus 159 -p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~ 236 (331)
T PRK15079 159 -PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMY 236 (331)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 3589999999999999999999999999999999999999999999999765 999999999975 4667899999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|+.+
T Consensus 237 -~G~ive~g~~~ 247 (331)
T PRK15079 237 -LGHAVELGTYD 247 (331)
T ss_pred -CCEEEEEcCHH
Confidence 59999999864
No 144
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-37 Score=346.17 Aligned_cols=220 Identities=22% Similarity=0.327 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++
T Consensus 2 ~i~~~~l~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 70 (287)
T PRK13641 2 SIKFENVDYIYSPGT---------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYH 70 (287)
T ss_pred EEEEEEEEEEcCCCC---------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 467899998874210 0124699999999999999999999999999999999999887 48999999987
Q ss_pred Ccc-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCC
Q 000937 696 KIQ-------ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPG 766 (1218)
Q Consensus 696 ~~~-------~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 766 (1218)
+.. ...++.++|++|++. .+..+||.||+.+..... ....++..++++++++.++|. +..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---- 143 (287)
T PRK13641 71 ITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP---- 143 (287)
T ss_pred CccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc----
Confidence 532 123457999999862 333589999998865332 123344456788999999996 5666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +
T Consensus 144 -~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~-~ 220 (287)
T PRK13641 144 -FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLE-H 220 (287)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 489999999999999999999999999999999999999999999999877999999999975 5678899999997 5
Q ss_pred CEEEEEcCCC
Q 000937 847 GRIIYSGPLG 856 (1218)
Q Consensus 847 G~~~~~g~~~ 856 (1218)
|+++..|+++
T Consensus 221 G~i~~~g~~~ 230 (287)
T PRK13641 221 GKLIKHASPK 230 (287)
T ss_pred CEEEEeCCHH
Confidence 9999999864
No 145
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.8e-37 Score=334.54 Aligned_cols=194 Identities=28% Similarity=0.430 Sum_probs=163.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---ccccceEEEeccCCC-CCCCC
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDI-HSPHI 718 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 718 (1218)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 4699999999999999999999999999999999998876 48999999987532 234567999999874 46679
Q ss_pred CHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000937 719 TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798 (1218)
Q Consensus 719 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPts 798 (1218)
|++||+.+..... ........+.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++++|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998865322 1122333456788999999987666654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 799 GLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 799 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~ 211 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED-GK 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CC
Confidence 99999999999999999877999999999975 56667999999974 53
No 146
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-37 Score=356.87 Aligned_cols=229 Identities=20% Similarity=0.284 Sum_probs=186.3
Q ss_pred EEEEEeEEEEEecCchhh----hh-----c-cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCce
Q 000937 616 TMVFQDLQYSIDTPLEMR----RR-----E-CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCF 685 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~----~~-----~-~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~ 685 (1218)
.++++|++..+....... .. . ....+...+|+|+|+++++||+++|+||||||||||+++|+|+.+| .
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~ 81 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--T 81 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--C
Confidence 477888887765432100 00 0 0011334689999999999999999999999999999999999877 4
Q ss_pred eeEEEECCEeCccc---c----ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccc
Q 000937 686 KGEIKVNGYPKIQE---T----FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK 758 (1218)
Q Consensus 686 ~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 758 (1218)
+|+|.++|.++... . .++.++|++|+..+++++||+||+.+....+. ....+..++++++++.++|.+..
T Consensus 82 sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~ 158 (400)
T PRK10070 82 RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYA 158 (400)
T ss_pred CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhh
Confidence 89999999986421 1 13569999999999999999999998765431 22334456788899999998877
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhh
Q 000937 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESF 837 (1218)
Q Consensus 759 ~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~ 837 (1218)
++.+ ++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+
T Consensus 159 ~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~ 232 (400)
T PRK10070 159 HSYP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIG 232 (400)
T ss_pred hcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhC
Confidence 7664 48999999999999999999999999999999999999999999999975 4899999999985 567889
Q ss_pred ceEEEEecCCEEEEEcCCC
Q 000937 838 DELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 838 d~~~~l~~~G~~~~~g~~~ 856 (1218)
|++++|. +|+++..|+++
T Consensus 233 Dri~vL~-~G~i~~~g~~~ 250 (400)
T PRK10070 233 DRIAIMQ-NGEVVQVGTPD 250 (400)
T ss_pred CEEEEEE-CCEEEecCCHH
Confidence 9999998 59999998764
No 147
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-36 Score=376.85 Aligned_cols=220 Identities=27% Similarity=0.419 Sum_probs=181.7
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
...++|+|++|++|.++ +.+||+|+|+.|++|+.+||+|||||||||++++|.++++| .+|+|++||
T Consensus 348 ~g~ief~nV~FsYPsRp-----------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP--~~G~V~idG 414 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRP-----------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP--TSGEVLIDG 414 (1228)
T ss_pred ccceEEEEEEecCCCCC-----------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCceEEEcC
Confidence 35789999999998642 45799999999999999999999999999999999999988 499999999
Q ss_pred EeCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHH---HHHHHHHcCCCccccccccCCCC
Q 000937 694 YPKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADC---VNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 694 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~---~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
.++.. +..+..+|.|.|+|.+| ..|++||+.|+. ++.+.++..+. ++..--...|.+-.|+.+|..++
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~-----~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~ 488 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGK-----PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV 488 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCC-----CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC
Confidence 98643 34567899999999765 589999998852 12222222111 11111233566778899998776
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
+||||||||++|||||+.||+|||||||||+||+++++.+.+.|+++. +|+|.|+++|+++ ..+.+|+++++. +|
T Consensus 489 -qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS--tIrnaD~I~v~~-~G 563 (1228)
T KOG0055|consen 489 -QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS--TIRNADKIAVME-EG 563 (1228)
T ss_pred -CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh--hhhccCEEEEEE-CC
Confidence 499999999999999999999999999999999999999999999864 5999999999985 467799999998 69
Q ss_pred EEEEEcCCCC
Q 000937 848 RIIYSGPLGN 857 (1218)
Q Consensus 848 ~~~~~g~~~~ 857 (1218)
++++.|+.++
T Consensus 564 ~IvE~G~h~E 573 (1228)
T KOG0055|consen 564 KIVEQGTHDE 573 (1228)
T ss_pred EEEEecCHHH
Confidence 9999999864
No 148
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-37 Score=341.80 Aligned_cols=218 Identities=20% Similarity=0.261 Sum_probs=180.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+
T Consensus 5 ~l~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~ 68 (255)
T PRK11300 5 LLSVSGLMMRFG--------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQH 68 (255)
T ss_pred eEEEeeEEEEEC--------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEE
Confidence 478999998873 24699999999999999999999999999999999999876 48999999987
Q ss_pred Cccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccC----------CCC--ChhhHHHHHHHHHHHcCCCcccc
Q 000937 696 KIQE---T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA----------PQI--NSKTKADCVNHVLKTIELDGIKE 759 (1218)
Q Consensus 696 ~~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----------~~~--~~~~~~~~~~~~l~~l~l~~~~~ 759 (1218)
.... . .+..++|++|++.+++.+||+||+.++...... ... ...+..+.++++++.+|+.+..+
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 148 (255)
T PRK11300 69 IEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHAN 148 (255)
T ss_pred CCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhh
Confidence 5421 1 233589999999999999999999986431110 000 11123346778889999987666
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhc
Q 000937 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFD 838 (1218)
Q Consensus 760 ~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d 838 (1218)
..+ ++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|
T Consensus 149 ~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d 222 (255)
T PRK11300 149 RQA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISD 222 (255)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCC
Confidence 654 479999999999999999999999999999999999999999999999876 899999999975 5667899
Q ss_pred eEEEEecCCEEEEEcCCC
Q 000937 839 ELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 839 ~~~~l~~~G~~~~~g~~~ 856 (1218)
+++++. +|++++.|+++
T Consensus 223 ~i~~l~-~g~i~~~~~~~ 239 (255)
T PRK11300 223 RIYVVN-QGTPLANGTPE 239 (255)
T ss_pred EEEEEE-CCeEEecCCHH
Confidence 999997 69999988864
No 149
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-37 Score=340.79 Aligned_cols=214 Identities=27% Similarity=0.424 Sum_probs=179.9
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.
T Consensus 3 l~~~~l~~~~~--------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~ 66 (258)
T PRK13548 3 LEARNLSVRLG--------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPL 66 (258)
T ss_pred EEEEeEEEEeC--------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEc
Confidence 67899998873 24699999999999999999999999999999999998776 489999999875
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 697 IQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 697 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
.. ...++.++|++|++.+++.+||+||+.+..... ....+...+.++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 138 (258)
T PRK13548 67 ADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGG 138 (258)
T ss_pred ccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHH
Confidence 32 223456899999988888899999998854221 1112233456788999999987767664 479999
Q ss_pred HHHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 774 QRKRLTIGVELV------ANPSIIFMDEPTTGLDARAAAIVMRAVKNVA-DTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 774 erqRv~ia~~L~------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
|||||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||+++ ++...+|++++|. +
T Consensus 139 e~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~ 216 (258)
T PRK13548 139 EQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLH-Q 216 (258)
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEE-C
Confidence 999999999999 5999999999999999999999999999997 56999999999975 5667899999998 5
Q ss_pred CEEEEEcCCC
Q 000937 847 GRIIYSGPLG 856 (1218)
Q Consensus 847 G~~~~~g~~~ 856 (1218)
|+++..|+++
T Consensus 217 G~i~~~~~~~ 226 (258)
T PRK13548 217 GRLVADGTPA 226 (258)
T ss_pred CEEEeeCCHH
Confidence 8999988764
No 150
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=9.7e-37 Score=339.38 Aligned_cols=214 Identities=24% Similarity=0.331 Sum_probs=180.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.++
T Consensus 1 i~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i 64 (252)
T TIGR03005 1 VRFSDVTKRFG--------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQL 64 (252)
T ss_pred CEEEEEEEEeC--------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 35788988773 24699999999999999999999999999999999998876 489999999875
Q ss_pred cc----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccc
Q 000937 697 IQ----------------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760 (1218)
Q Consensus 697 ~~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 760 (1218)
.. ...++.++|++|++.+++..|+.||+.++..... ........+.++++++.+++.+..+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 142 (252)
T TIGR03005 65 YHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADH 142 (252)
T ss_pred cccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhc
Confidence 31 1235679999999999999999999987532111 12233344567889999999876665
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhce
Q 000937 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDE 839 (1218)
Q Consensus 761 ~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~ 839 (1218)
.. .+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++...+|+
T Consensus 143 ~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~ 216 (252)
T TIGR03005 143 MP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADR 216 (252)
T ss_pred Ch-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCE
Confidence 53 579999999999999999999999999999999999999999999999875 899999999985 56678999
Q ss_pred EEEEecCCEEEEEcCC
Q 000937 840 LILLKTGGRIIYSGPL 855 (1218)
Q Consensus 840 ~~~l~~~G~~~~~g~~ 855 (1218)
+++|. +|++++.|+.
T Consensus 217 i~~l~-~G~i~~~g~~ 231 (252)
T TIGR03005 217 VCFFD-KGRIVEQGKP 231 (252)
T ss_pred EEEEE-CCEEEEeCCH
Confidence 99997 6999998875
No 151
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=339.77 Aligned_cols=215 Identities=24% Similarity=0.300 Sum_probs=177.3
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~ 691 (1218)
..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.+
T Consensus 11 ~~l~~~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~ 76 (258)
T PRK14268 11 PQIKVENLNLWYG--------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSI 76 (258)
T ss_pred eeEEEeeeEEEeC--------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEE
Confidence 4588999998773 246999999999999999999999999999999999987641 25899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----cccccc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLV 762 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~ 762 (1218)
+|.++.. ...++.++|++|++.+++ +|++||+.+..... ....+...+.++++++.+++.+ ..++.
T Consensus 77 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 151 (258)
T PRK14268 77 EGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP- 151 (258)
T ss_pred CCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-
Confidence 9987532 123567999999988887 89999999865332 1223333456788899988842 23333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.+|++++
T Consensus 152 ----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~ 225 (258)
T PRK14268 152 ----ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGF 225 (258)
T ss_pred ----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEE
Confidence 358999999999999999999999999999999999999999999999864 899999999975 56678999999
Q ss_pred EecCCEEEEEcCC
Q 000937 843 LKTGGRIIYSGPL 855 (1218)
Q Consensus 843 l~~~G~~~~~g~~ 855 (1218)
|. +|++++.|++
T Consensus 226 l~-~G~i~~~~~~ 237 (258)
T PRK14268 226 FL-MGELIEFGQT 237 (258)
T ss_pred EE-CCEEEEeCCH
Confidence 97 5999999875
No 152
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=9.1e-37 Score=338.27 Aligned_cols=217 Identities=24% Similarity=0.286 Sum_probs=175.8
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCceeeEEEECCE
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGCFKGEIKVNGY 694 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~--~~~~~~G~i~~~g~ 694 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|+
T Consensus 1 l~~~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--~~G~i~~~g~ 64 (243)
T TIGR01978 1 LKIKDLHVSVE--------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV--TSGTILFKGQ 64 (243)
T ss_pred CeEeeEEEEEC--------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--CcceEEECCE
Confidence 35788888773 246999999999999999999999999999999999984 34 5899999998
Q ss_pred eCccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCC----CCChhhHHHHHHHHHHHcCCC-ccccccccCC
Q 000937 695 PKIQE---T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP----QINSKTKADCVNHVLKTIELD-GIKESLVGIP 765 (1218)
Q Consensus 695 ~~~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 765 (1218)
+.... . .+..++|++|++.+++.+|++|++.+........ .....+..++++++++.+++. +..++.++
T Consensus 65 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 142 (243)
T TIGR01978 65 DLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN-- 142 (243)
T ss_pred ecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc--
Confidence 75421 1 2234899999999999999999998764322110 011222345678899999997 34554432
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh-hceEEEEe
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFES-FDELILLK 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~ 844 (1218)
.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|.
T Consensus 143 --~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~ 219 (243)
T TIGR01978 143 --EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLL 219 (243)
T ss_pred --cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEe
Confidence 249999999999999999999999999999999999999999999999878999999999975 45555 79999997
Q ss_pred cCCEEEEEcCC
Q 000937 845 TGGRIIYSGPL 855 (1218)
Q Consensus 845 ~~G~~~~~g~~ 855 (1218)
+|++++.|++
T Consensus 220 -~G~i~~~g~~ 229 (243)
T TIGR01978 220 -DGRIVKSGDV 229 (243)
T ss_pred -CCEEEEecCH
Confidence 6999999876
No 153
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-37 Score=342.71 Aligned_cols=219 Identities=24% Similarity=0.384 Sum_probs=181.8
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 10 ~~l~i~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~ 73 (265)
T PRK10575 10 TTFALRNVSFRVP--------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQ 73 (265)
T ss_pred ceEEEeeEEEEEC--------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCE
Confidence 3588999998873 24699999999999999999999999999999999998876 4899999998
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCC-CCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP-QINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
+... ...++.++|++|+..+++.+|+.||+.+........ ........++++++++.+++.+..++.+ .+|
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 148 (265)
T PRK10575 74 PLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSL 148 (265)
T ss_pred ehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccC
Confidence 7532 233567999999988888999999998753211000 0111223456788999999987666664 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++
T Consensus 149 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~-~G~i 226 (265)
T PRK10575 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALR-GGEM 226 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeE
Confidence 999999999999999999999999999999999999999999999765 899999999985 5678899999997 5999
Q ss_pred EEEcCCC
Q 000937 850 IYSGPLG 856 (1218)
Q Consensus 850 ~~~g~~~ 856 (1218)
+..|+.+
T Consensus 227 ~~~~~~~ 233 (265)
T PRK10575 227 IAQGTPA 233 (265)
T ss_pred EEecCHH
Confidence 9998764
No 154
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=338.96 Aligned_cols=216 Identities=22% Similarity=0.258 Sum_probs=177.1
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~ 691 (1218)
..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.+
T Consensus 6 ~~l~~~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 71 (254)
T PRK14273 6 AIIETENLNLFYT--------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIY 71 (254)
T ss_pred ceEEEeeeEEEeC--------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEE
Confidence 3588999999873 236999999999999999999999999999999999987652 24899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC----ccccccc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD----GIKESLV 762 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~ 762 (1218)
+|+++.. ...++.++|++|++.+++ +||+||+.+...... ........+.++++++.+++. +..++.
T Consensus 72 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~- 147 (254)
T PRK14273 72 EGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN- 147 (254)
T ss_pred CCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC-
Confidence 9987531 124567999999988774 899999988653321 112223345677888888873 233443
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|++++
T Consensus 148 ----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~ 221 (254)
T PRK14273 148 ----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAF 221 (254)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 35899999999999999999999999999999999999999999999996 4799999999985 56678999999
Q ss_pred EecCCEEEEEcCC
Q 000937 843 LKTGGRIIYSGPL 855 (1218)
Q Consensus 843 l~~~G~~~~~g~~ 855 (1218)
|. +|+++..|++
T Consensus 222 l~-~G~i~~~g~~ 233 (254)
T PRK14273 222 FL-NGCIEEESST 233 (254)
T ss_pred EE-CCEEEEeCCH
Confidence 97 5999999875
No 155
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-36 Score=342.15 Aligned_cols=214 Identities=23% Similarity=0.341 Sum_probs=180.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.
T Consensus 2 l~~~~l~~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 66 (274)
T PRK13644 2 IRLENVSYSYP-------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDT 66 (274)
T ss_pred EEEEEEEEEcC-------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEC
Confidence 57889988773 123599999999999999999999999999999999998876 489999999886
Q ss_pred cc----ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 697 IQ----ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 697 ~~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
.. ...++.++|++|++. .++..|+.||+.+..... .....+..+.++++++.+++.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS 138 (274)
T PRK13644 67 GDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLS 138 (274)
T ss_pred CccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCC
Confidence 32 223567999999875 466789999998865322 1233444566888999999987777654 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++ +.+|+++++. +|++++
T Consensus 139 ~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~-~G~i~~ 215 (274)
T PRK13644 139 GGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMD-RGKIVL 215 (274)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999985 44 6799999997 599999
Q ss_pred EcCCC
Q 000937 852 SGPLG 856 (1218)
Q Consensus 852 ~g~~~ 856 (1218)
.|+++
T Consensus 216 ~g~~~ 220 (274)
T PRK13644 216 EGEPE 220 (274)
T ss_pred ECCHH
Confidence 99863
No 156
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-37 Score=343.37 Aligned_cols=215 Identities=24% Similarity=0.379 Sum_probs=181.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|++.
T Consensus 4 l~~~~l~~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (277)
T PRK13652 4 IETRDLCYSYSG-------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPI 68 (277)
T ss_pred EEEEEEEEEeCC-------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 678999988731 23599999999999999999999999999999999998876 489999999875
Q ss_pred cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 697 IQ---ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 697 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
.. ...++.++|++|++. .+...||.||+.+..... ....+...++++++++.+++.+..++.+ +.|||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 140 (277)
T PRK13652 69 TKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSG 140 (277)
T ss_pred CcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCH
Confidence 42 234567899999963 344689999998765321 1233344556789999999987777664 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 141 Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~-~G~i~~ 218 (277)
T PRK13652 141 GEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMD-KGRIVA 218 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCeEEE
Confidence 9999999999999999999999999999999999999999999875 899999999985 5678899999998 589999
Q ss_pred EcCCC
Q 000937 852 SGPLG 856 (1218)
Q Consensus 852 ~g~~~ 856 (1218)
.|+++
T Consensus 219 ~g~~~ 223 (277)
T PRK13652 219 YGTVE 223 (277)
T ss_pred ECCHH
Confidence 99864
No 157
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=337.69 Aligned_cols=217 Identities=27% Similarity=0.326 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 3 ~l~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 68 (250)
T PRK14247 3 KIEIRDLKVSFG--------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLD 68 (250)
T ss_pred eEEEEeeEEEEC--------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEEC
Confidence 378899998773 246999999999999999999999999999999999987642 358999999
Q ss_pred CEeCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----cccccccCC
Q 000937 693 GYPKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVGIP 765 (1218)
Q Consensus 693 g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 765 (1218)
|.++.. ...++.++|++|++.+++.+||.||+.+....+.. .....+..+.++++++.+++.+ ..++.
T Consensus 69 g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 143 (250)
T PRK14247 69 GQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP---- 143 (250)
T ss_pred CEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC----
Confidence 987532 23456799999999888999999999886533211 0122333456788999999854 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||+++ ++.+.+|++++|.
T Consensus 144 -~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~- 219 (250)
T PRK14247 144 -AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLY- 219 (250)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEE-
Confidence 358999999999999999999999999999999999999999999999864 899999999985 5667899999997
Q ss_pred CCEEEEEcCC
Q 000937 846 GGRIIYSGPL 855 (1218)
Q Consensus 846 ~G~~~~~g~~ 855 (1218)
+|+++..|++
T Consensus 220 ~G~i~~~g~~ 229 (250)
T PRK14247 220 KGQIVEWGPT 229 (250)
T ss_pred CCeEEEECCH
Confidence 6999999875
No 158
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.3e-36 Score=336.53 Aligned_cols=216 Identities=25% Similarity=0.366 Sum_probs=179.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++++|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.++|.+.
T Consensus 3 i~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~ 66 (242)
T TIGR03411 3 LYLEGLSVSFD--------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD--EGSVLFGGTDL 66 (242)
T ss_pred EEEEeeEEEcC--------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCeec
Confidence 67889988773 246999999999999999999999999999999999988764 89999999875
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccC--C---CCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 697 IQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA--P---QINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 697 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
... ..++.++|++|++.+++.+||+||+.+....... . ....+...++++++++.+++.+..+..+
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (242)
T TIGR03411 67 TGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA----- 141 (242)
T ss_pred CCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----
Confidence 321 1234699999999999999999999886432100 0 0112233456888999999987766654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
+.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|
T Consensus 142 ~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g 218 (242)
T TIGR03411 142 GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLH-QG 218 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEE-CC
Confidence 47999999999999999999999999999999999999999999999976 799999999975 5667899999997 59
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
+++..|+.+
T Consensus 219 ~~~~~~~~~ 227 (242)
T TIGR03411 219 SVLAEGSLD 227 (242)
T ss_pred eEEeeCCHH
Confidence 999988753
No 159
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-37 Score=330.84 Aligned_cols=208 Identities=25% Similarity=0.393 Sum_probs=172.5
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
.++|+++.++ ++. .|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.++.
T Consensus 2 ~~~~l~~~~~--------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~ 63 (211)
T cd03298 2 RLDKIRFSYG--------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVT 63 (211)
T ss_pred EEEeEEEEeC--------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcC
Confidence 5788888763 122 299999999999999999999999999999999876 4899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 698 QE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 698 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
.. ..++.++|++|++.+++.+|++||+.+....+. .. ....+++++++++.+++.+..++.+ .+|||||||
T Consensus 64 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 135 (211)
T cd03298 64 AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQ 135 (211)
T ss_pred cCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHH
Confidence 31 234679999999999999999999987542111 11 1233456788999999987777654 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|
T Consensus 136 rv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 211 (211)
T cd03298 136 RVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLD-NGRIAAQG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEE-CCEEeecC
Confidence 999999999999999999999999999999999999999764 899999999975 5667899999997 58987654
No 160
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-37 Score=340.79 Aligned_cols=218 Identities=24% Similarity=0.370 Sum_probs=181.1
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.
T Consensus 3 l~~~~l~~~~~--------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 66 (255)
T PRK11231 3 LRTENLTVGYG--------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPI 66 (255)
T ss_pred EEEEeEEEEEC--------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEh
Confidence 67889998773 24699999999999999999999999999999999998776 489999999875
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 697 IQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 697 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
.. ...++.++|++|+..+++.+|+.||+.++...... .........+.++++++.+++.+..++.. ..|||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 141 (255)
T PRK11231 67 SMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSG 141 (255)
T ss_pred HHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCH
Confidence 32 22345699999998888889999999875211000 01111233456788899999987767654 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++..
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~ 219 (255)
T PRK11231 142 GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLA-NGHVMAQ 219 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEE-CCeEEEE
Confidence 9999999999999999999999999999999999999999999877999999999985 5778899999997 5899999
Q ss_pred cCCCC
Q 000937 853 GPLGN 857 (1218)
Q Consensus 853 g~~~~ 857 (1218)
|+.++
T Consensus 220 ~~~~~ 224 (255)
T PRK11231 220 GTPEE 224 (255)
T ss_pred cCHHH
Confidence 88643
No 161
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=342.33 Aligned_cols=216 Identities=23% Similarity=0.334 Sum_probs=182.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..+|. +|+|.++|++
T Consensus 5 ~l~~~~l~~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~--~G~i~~~g~~ 70 (279)
T PRK13635 5 IIRVEHISFRYPD------------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE--AGTITVGGMV 70 (279)
T ss_pred eEEEEEEEEEeCC------------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEE
Confidence 4789999998741 1246999999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+.. ...++.++|++|++. .++..||.||+.+..... ....++..++++++++.+||.+..++.. ..||
T Consensus 71 i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (279)
T PRK13635 71 LSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLS 142 (279)
T ss_pred CCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCC
Confidence 643 223567999999973 667789999998865432 1233344567889999999988777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|+++++. +|+++
T Consensus 143 ~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~-~G~i~ 219 (279)
T PRK13635 143 GGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMN-KGEIL 219 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999876 899999999975 34 5699999998 59999
Q ss_pred EEcCCC
Q 000937 851 YSGPLG 856 (1218)
Q Consensus 851 ~~g~~~ 856 (1218)
+.|+.+
T Consensus 220 ~~g~~~ 225 (279)
T PRK13635 220 EEGTPE 225 (279)
T ss_pred EECCHH
Confidence 999863
No 162
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=7.6e-37 Score=335.69 Aligned_cols=212 Identities=23% Similarity=0.306 Sum_probs=175.3
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+.
T Consensus 1 l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 64 (230)
T TIGR03410 1 LEVSNLNVYYG--------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDI 64 (230)
T ss_pred CEEEeEEEEeC--------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 35788888773 24699999999999999999999999999999999999876 489999999875
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcC-CCccccccccCCCCCCCC
Q 000937 697 IQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE-LDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 697 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~LS 771 (1218)
... ..++.++|++|+..+++.+|+.||+.+....+. . ...+..+++++.++ +.+..++.+ ++||
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~---~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 133 (230)
T TIGR03410 65 TKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---R---RSRKIPDEIYELFPVLKEMLGRRG-----GDLS 133 (230)
T ss_pred CCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---c---chHHHHHHHHHHHHhHHHHhhCCh-----hhCC
Confidence 421 124569999999999999999999988653321 1 12234566777776 455555543 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|+++
T Consensus 134 ~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~g~i~ 211 (230)
T TIGR03410 134 GGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVME-RGRVV 211 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999875 899999999975 5666899999997 59999
Q ss_pred EEcCCCC
Q 000937 851 YSGPLGN 857 (1218)
Q Consensus 851 ~~g~~~~ 857 (1218)
..|+.++
T Consensus 212 ~~~~~~~ 218 (230)
T TIGR03410 212 ASGAGDE 218 (230)
T ss_pred EECCHHH
Confidence 9998753
No 163
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=9.7e-37 Score=341.24 Aligned_cols=221 Identities=24% Similarity=0.356 Sum_probs=182.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCE
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKVNGY 694 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~ 694 (1218)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+|. ..+|+|.++|.
T Consensus 4 ~l~~~nl~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~ 69 (262)
T PRK09984 4 IIRVEKLAKTFN--------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGR 69 (262)
T ss_pred EEEEeeEEEEeC--------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCE
Confidence 478999998873 246999999999999999999999999999999999987764 13699999998
Q ss_pred eCcc--------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCC-----CCChhhHHHHHHHHHHHcCCCcccccc
Q 000937 695 PKIQ--------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP-----QINSKTKADCVNHVLKTIELDGIKESL 761 (1218)
Q Consensus 695 ~~~~--------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~ 761 (1218)
+... ...++.++|++|++.+++.+||.||+.+......+. .....+.+++++++++.+++.+..+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 149 (262)
T PRK09984 70 TVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR 149 (262)
T ss_pred ecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC
Confidence 7532 123456899999999999999999998754211000 011223345688899999998776765
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceE
Q 000937 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDEL 840 (1218)
Q Consensus 762 ~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~ 840 (1218)
+ .+|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++
T Consensus 150 ~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i 223 (262)
T PRK09984 150 V-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERI 223 (262)
T ss_pred c-----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 4 479999999999999999999999999999999999999999999999864 899999999985 467889999
Q ss_pred EEEecCCEEEEEcCCCC
Q 000937 841 ILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 841 ~~l~~~G~~~~~g~~~~ 857 (1218)
+++. +|++++.|++++
T Consensus 224 ~~l~-~g~i~~~g~~~~ 239 (262)
T PRK09984 224 VALR-QGHVFYDGSSQQ 239 (262)
T ss_pred EEEE-CCEEEEeCCHHH
Confidence 9997 589999998753
No 164
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=337.74 Aligned_cols=218 Identities=27% Similarity=0.302 Sum_probs=179.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 4 ~l~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~ 69 (253)
T PRK14267 4 AIETVNLRVYYG--------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLF 69 (253)
T ss_pred eEEEEeEEEEeC--------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEEC
Confidence 478999998873 246999999999999999999999999999999999987653 248999999
Q ss_pred CEeCc--c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccccc
Q 000937 693 GYPKI--Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVG 763 (1218)
Q Consensus 693 g~~~~--~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 763 (1218)
|+++. . ..+++.++|++|++.+++.+||.||+.+....+.. ....+...+.++++++.+++.. ..+..
T Consensus 70 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 146 (253)
T PRK14267 70 GRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY-- 146 (253)
T ss_pred CEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC--
Confidence 98763 1 13456799999999999999999999886543211 0122333456778888888753 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|++++|
T Consensus 147 ---~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 221 (253)
T PRK14267 147 ---PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFL 221 (253)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999865 699999999975 567789999999
Q ss_pred ecCCEEEEEcCCC
Q 000937 844 KTGGRIIYSGPLG 856 (1218)
Q Consensus 844 ~~~G~~~~~g~~~ 856 (1218)
. +|+++..|+++
T Consensus 222 ~-~G~i~~~~~~~ 233 (253)
T PRK14267 222 Y-LGKLIEVGPTR 233 (253)
T ss_pred E-CCEEEEeCCHH
Confidence 7 59999998863
No 165
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.4e-36 Score=331.28 Aligned_cols=213 Identities=25% Similarity=0.377 Sum_probs=176.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++.. ...+.+++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++
T Consensus 6 ~l~~~~l~~~~~~~----------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~ 73 (228)
T PRK10584 6 IVEVHHLKKSVGQG----------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQP 73 (228)
T ss_pred eEEEeeeEEEccCC----------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEE
Confidence 47899999887421 0113599999999999999999999999999999999999876 48999999987
Q ss_pred Ccccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCC
Q 000937 696 KIQET------F-VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768 (1218)
Q Consensus 696 ~~~~~------~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 768 (1218)
..... . ++.++|++|++.+++.+|+.||+.+....+. ....+..++++++++.+++.+..+..+ .
T Consensus 74 ~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 145 (228)
T PRK10584 74 LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----A 145 (228)
T ss_pred cccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----h
Confidence 53211 1 2569999999989999999999987653321 122334567888999999987766654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ . .+.+|+++++. +|
T Consensus 146 ~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~-~~~~d~i~~l~-~g 222 (228)
T PRK10584 146 QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-L-AARCDRRLRLV-NG 222 (228)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-H-HHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999765 899999999975 3 46699999997 58
Q ss_pred EEEE
Q 000937 848 RIIY 851 (1218)
Q Consensus 848 ~~~~ 851 (1218)
+++.
T Consensus 223 ~i~~ 226 (228)
T PRK10584 223 QLQE 226 (228)
T ss_pred EEEe
Confidence 8864
No 166
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=341.25 Aligned_cols=214 Identities=22% Similarity=0.334 Sum_probs=178.3
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|+++
T Consensus 2 l~~~~l~~~~~--------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 65 (271)
T PRK13638 2 LATSDLWFRYQ--------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPL 65 (271)
T ss_pred eEEEEEEEEcC--------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEc
Confidence 57889998773 24699999999999999999999999999999999998876 489999999985
Q ss_pred cc-----ccccceEEEeccCCCC-CCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQ-----ETFVRVSGYCEQTDIH-SPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~-----~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
.. ...++.++|++|++.. +...|+.||+.+..... .....+..+.++++++.+++.+..++.+ ..|
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 137 (271)
T PRK13638 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCL 137 (271)
T ss_pred ccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhC
Confidence 31 1234679999998753 45568999998764322 1223333456788999999987766654 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|. +|+++
T Consensus 138 SgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~-~G~i~ 215 (271)
T PRK13638 138 SHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLR-QGQIL 215 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 5667899999997 59999
Q ss_pred EEcCCC
Q 000937 851 YSGPLG 856 (1218)
Q Consensus 851 ~~g~~~ 856 (1218)
+.|+++
T Consensus 216 ~~g~~~ 221 (271)
T PRK13638 216 THGAPG 221 (271)
T ss_pred EeCCHH
Confidence 999763
No 167
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-36 Score=345.84 Aligned_cols=225 Identities=17% Similarity=0.242 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG--CFKGEIKVNG 693 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~--~~~G~i~~~g 693 (1218)
.++++|+++.++.. .+..++|+||||+|++||+++|+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 3 ~L~v~~l~~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G 72 (326)
T PRK11022 3 LLNVDKLSVHFGDE----------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNG 72 (326)
T ss_pred eEEEeCeEEEECCC----------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECC
Confidence 37899999988531 11247999999999999999999999999999999999987631 2589999999
Q ss_pred EeCcc---cc----ccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccC
Q 000937 694 YPKIQ---ET----FVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764 (1218)
Q Consensus 694 ~~~~~---~~----~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 764 (1218)
+++.. .. .++.++|++|++ .+.|.+|+.+++........ ....++..+++.++++.+||.+..+..-.
T Consensus 73 ~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~- 149 (326)
T PRK11022 73 QDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDV- 149 (326)
T ss_pred EECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhC-
Confidence 98642 11 124699999997 47899999998876543321 12344556778899999999753221111
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
.+.+|||||||||+||+||+.+|++|++||||+|||+.++.+++++|+++++ .|.|+|++|||++ .+.+.+|++++|
T Consensus 150 -~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm 227 (326)
T PRK11022 150 -YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVM 227 (326)
T ss_pred -CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 1358999999999999999999999999999999999999999999999986 4999999999975 456789999999
Q ss_pred ecCCEEEEEcCCC
Q 000937 844 KTGGRIIYSGPLG 856 (1218)
Q Consensus 844 ~~~G~~~~~g~~~ 856 (1218)
. +|++++.|+.+
T Consensus 228 ~-~G~ive~g~~~ 239 (326)
T PRK11022 228 Y-AGQVVETGKAH 239 (326)
T ss_pred E-CCEEEEECCHH
Confidence 8 69999999864
No 168
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.6e-36 Score=339.72 Aligned_cols=224 Identities=19% Similarity=0.295 Sum_probs=180.6
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++...... ..+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++
T Consensus 3 l~~~~l~~~~~~~~~~~-----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG-----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDL 75 (265)
T ss_pred EEEEeEEEEeccCcccc-----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEc
Confidence 67899998874210000 00135799999999999999999999999999999999999876 489999999875
Q ss_pred ccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000937 697 IQE------TFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGV 767 (1218)
Q Consensus 697 ~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 767 (1218)
... ..++.++|++|++ .+.+.+||+||+.+..... .........++++++++.+++. +..+..+
T Consensus 76 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 148 (265)
T TIGR02769 76 YQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLP----- 148 (265)
T ss_pred cccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCCh-----
Confidence 421 1345799999986 4667899999998754321 1122233455678899999995 5556553
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|. +
T Consensus 149 ~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~-~ 226 (265)
T TIGR02769 149 RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMD-K 226 (265)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEe-C
Confidence 479999999999999999999999999999999999999999999999875 899999999975 5667899999997 6
Q ss_pred CEEEEEcCCC
Q 000937 847 GRIIYSGPLG 856 (1218)
Q Consensus 847 G~~~~~g~~~ 856 (1218)
|++++.|+++
T Consensus 227 G~i~~~g~~~ 236 (265)
T TIGR02769 227 GQIVEECDVA 236 (265)
T ss_pred CEEEEECCHH
Confidence 9999999864
No 169
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-36 Score=341.38 Aligned_cols=215 Identities=27% Similarity=0.382 Sum_probs=179.9
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.+.. .+.+++|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|++.
T Consensus 2 l~~~~l~~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~~ 66 (275)
T PRK13639 2 LETRDLKYSYPD-------------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT--SGEVLIKGEPI 66 (275)
T ss_pred EEEEEEEEEeCC-------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECCEEC
Confidence 578899988731 236999999999999999999999999999999999988764 89999999886
Q ss_pred cc-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQ-----ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
.. ...++.++|++|++. .+...||.||+.+..... .....+..+++.++++.+++.+..++.+ ++|
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 138 (275)
T PRK13639 67 KYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHL 138 (275)
T ss_pred ccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhC
Confidence 31 123567999999863 334579999998764321 1223344566888999999988777764 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 139 S~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~-~G~i~ 216 (275)
T PRK13639 139 SGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMS-DGKII 216 (275)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 5667899999998 59999
Q ss_pred EEcCCC
Q 000937 851 YSGPLG 856 (1218)
Q Consensus 851 ~~g~~~ 856 (1218)
..|+++
T Consensus 217 ~~g~~~ 222 (275)
T PRK13639 217 KEGTPK 222 (275)
T ss_pred EeCCHH
Confidence 999864
No 170
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=340.87 Aligned_cols=220 Identities=23% Similarity=0.326 Sum_probs=182.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|+
T Consensus 6 ~~l~i~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~ 69 (265)
T PRK10253 6 ARLRGEQLTLGYG--------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGE 69 (265)
T ss_pred cEEEEEEEEEEEC--------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCE
Confidence 4688999999884 24699999999999999999999999999999999998876 4899999998
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
++.. ...++.++|++|++.+++.+|++||+.+......+ .....+...+.++++++.+++.+..++.+ +.|
T Consensus 70 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 144 (265)
T PRK10253 70 HIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTL 144 (265)
T ss_pred EhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccC
Confidence 7532 22345699999999988899999999864211100 00011233456788999999987666654 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +|++
T Consensus 145 S~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i 222 (265)
T PRK10253 145 SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALR-EGKI 222 (265)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999875 899999999985 5778899999997 6999
Q ss_pred EEEcCCCC
Q 000937 850 IYSGPLGN 857 (1218)
Q Consensus 850 ~~~g~~~~ 857 (1218)
+..|++++
T Consensus 223 ~~~g~~~~ 230 (265)
T PRK10253 223 VAQGAPKE 230 (265)
T ss_pred EEeCCHHH
Confidence 99998643
No 171
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.2e-36 Score=339.36 Aligned_cols=217 Identities=28% Similarity=0.416 Sum_probs=180.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 l~~~~l~~~~~--------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 65 (256)
T TIGR03873 2 LRLSRVSWSAG--------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDL 65 (256)
T ss_pred ceEEeEEEEEC--------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEc
Confidence 56788888773 24699999999999999999999999999999999998876 489999999875
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 697 IQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 697 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
.. ...++.++|++|+..+++.+||.||+.+....... ......+..+++.++++.+++.+..++.+ ..|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 140 (256)
T TIGR03873 66 HGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSG 140 (256)
T ss_pred ccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCH
Confidence 42 22345689999998778889999999875211000 00111223456788999999987767654 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.+|++++|. +|+++..
T Consensus 141 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~ 218 (256)
T TIGR03873 141 GERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLD-GGRVVAA 218 (256)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCCEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 5668899999997 5899999
Q ss_pred cCCC
Q 000937 853 GPLG 856 (1218)
Q Consensus 853 g~~~ 856 (1218)
|+.+
T Consensus 219 g~~~ 222 (256)
T TIGR03873 219 GPPR 222 (256)
T ss_pred cCHH
Confidence 8864
No 172
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-36 Score=344.98 Aligned_cols=227 Identities=21% Similarity=0.257 Sum_probs=184.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++.+||++.+....... ...+.+.+|+|||++|++||++||+|+||||||||+++|+|+.++ .+|+|.++|+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~----~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~ 77 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLF----KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQ 77 (327)
T ss_pred ceEEEeeeEEEEcCCCCcc----ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCE
Confidence 3588999999885321100 001235799999999999999999999999999999999998876 4899999999
Q ss_pred eCcc------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCC
Q 000937 695 PKIQ------ETFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIP 765 (1218)
Q Consensus 695 ~~~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~ 765 (1218)
++.. ..+++.++||+|++ .+.|.+|+.+++........ .....+..+++.++++.+||.+ ..++.
T Consensus 78 ~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~---- 151 (327)
T PRK11308 78 DLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY---- 151 (327)
T ss_pred EcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC----
Confidence 8642 12456799999997 58899999999987644321 1234445667899999999963 44554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
+++|||||||||+||+||+.+|++|++||||+|||..++..++++|+++.++ |.|+|++|||++ .+.+.+|++++|.
T Consensus 152 -p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~ 229 (327)
T PRK11308 152 -PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMY 229 (327)
T ss_pred -CccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 3589999999999999999999999999999999999999999999999765 999999999975 4556899999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|+.+
T Consensus 230 -~G~ive~g~~~ 240 (327)
T PRK11308 230 -LGRCVEKGTKE 240 (327)
T ss_pred -CCEEEEECCHH
Confidence 59999999864
No 173
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=336.30 Aligned_cols=221 Identities=25% Similarity=0.323 Sum_probs=177.0
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CceeeEEE
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--S-GCFKGEIK 690 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~-~~~~G~i~ 690 (1218)
|..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ + .+.+|+|.
T Consensus 4 ~~~l~~~~l~~~~~--------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 69 (253)
T PRK14242 4 PPKMEARGLSFFYG--------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL 69 (253)
T ss_pred CcEEEEeeeEEEEC--------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEE
Confidence 34589999999883 2369999999999999999999999999999999999753 1 12589999
Q ss_pred ECCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 691 VNGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 691 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
++|+++.. ...++.++|++|++.+++ .||+||+.+....+. ....+...++++++++.+++.+....... .
T Consensus 70 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~ 145 (253)
T PRK14242 70 LDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLH-E 145 (253)
T ss_pred ECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-C
Confidence 99987632 123567999999988887 599999988754321 11122334567888898888542111111 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.+|++++|.
T Consensus 146 ~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~- 222 (253)
T PRK14242 146 SALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFY- 222 (253)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEE-
Confidence 1358999999999999999999999999999999999999999999999954 799999999985 5667899999997
Q ss_pred CCEEEEEcCC
Q 000937 846 GGRIIYSGPL 855 (1218)
Q Consensus 846 ~G~~~~~g~~ 855 (1218)
+|+++..|++
T Consensus 223 ~G~i~~~g~~ 232 (253)
T PRK14242 223 MGKLIEVGPT 232 (253)
T ss_pred CCEEEEeCCH
Confidence 5999998875
No 174
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.9e-36 Score=345.28 Aligned_cols=226 Identities=20% Similarity=0.311 Sum_probs=183.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCE
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKVNGY 694 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~ 694 (1218)
.++++|+++.+... .+...+|+||||+|++||+++|+|+||||||||+++|+|+.++. ..+|+|.++|+
T Consensus 12 ~L~i~~l~~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~ 81 (330)
T PRK09473 12 LLDVKDLRVTFSTP----------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGR 81 (330)
T ss_pred eEEEeCeEEEEecC----------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCE
Confidence 58899999988531 12357999999999999999999999999999999999987752 13899999999
Q ss_pred eCcc---cc---cc-ceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 695 PKIQ---ET---FV-RVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 695 ~~~~---~~---~~-~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
++.. .. .+ +.++||+|++ .+.|.+|+.+++........ .....+..+++.++++.++|.+..+..- .
T Consensus 82 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~--~ 157 (330)
T PRK09473 82 EILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMK--M 157 (330)
T ss_pred ECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhc--C
Confidence 8642 11 22 4799999997 67899999999987654321 1234444567888999999875432221 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+.+|||||||||+||+||+.+|++|++||||+|||+.++..++++|++++++ |.|+|++|||++ .+.+.+|++++|.
T Consensus 158 ~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~ 236 (330)
T PRK09473 158 YPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY 236 (330)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 24689999999999999999999999999999999999999999999999775 999999999975 4567899999997
Q ss_pred cCCEEEEEcCCCC
Q 000937 845 TGGRIIYSGPLGN 857 (1218)
Q Consensus 845 ~~G~~~~~g~~~~ 857 (1218)
+|++++.|+.++
T Consensus 237 -~G~ive~g~~~~ 248 (330)
T PRK09473 237 -AGRTMEYGNARD 248 (330)
T ss_pred -CCEEEEECCHHH
Confidence 699999998643
No 175
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=335.91 Aligned_cols=220 Identities=20% Similarity=0.277 Sum_probs=176.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCC---CCCCceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR---KTSGCFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~---~~~~~~~G~i~~~ 692 (1218)
.++++|+++.+. .+++|+|+|+++++||+++|+||||||||||+++|+|+ .++.+.+|+|.++
T Consensus 3 ~l~~~~~~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 68 (250)
T PRK14245 3 KIDARDVNFWYG--------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRID 68 (250)
T ss_pred EEEEEEEEEEEC--------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEEC
Confidence 578899998873 24699999999999999999999999999999999996 2332247999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
|++... ...++.++|++|++.+++ .|+.||+.+....+. ....+...+.++++++.+++.+..+.... ..+
T Consensus 69 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 144 (250)
T PRK14245 69 GRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLK-ESA 144 (250)
T ss_pred CEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCc
Confidence 988642 123567999999988776 699999988654321 11122234567888999988642211111 113
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++.+.+|++++|. +|
T Consensus 145 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~-~G 221 (250)
T PRK14245 145 FALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFY-MG 221 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEE-CC
Confidence 5899999999999999999999999999999999999999999999985 4899999999985 5678899999997 69
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
++++.|+++
T Consensus 222 ~~~~~~~~~ 230 (250)
T PRK14245 222 EMVEYDDTK 230 (250)
T ss_pred EEEEECCHH
Confidence 999999863
No 176
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-36 Score=329.18 Aligned_cols=225 Identities=24% Similarity=0.346 Sum_probs=185.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-C-C-ceeeEEEECC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT-S-G-CFKGEIKVNG 693 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~-~-~-~~~G~i~~~g 693 (1218)
++.+||+..+.+. .+..++++||||++++||++||+|.|||||||+.++|.|+.+ + + ..+|+|.++|
T Consensus 2 L~v~nL~v~f~~~----------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g 71 (316)
T COG0444 2 LEVKNLSVSFPTD----------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDG 71 (316)
T ss_pred ceEeeeEEEEecC----------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECC
Confidence 5688998888642 124679999999999999999999999999999999999876 3 2 3579999999
Q ss_pred EeCc---cc---c-ccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCC-ChhhHHHHHHHHHHHcCCCcccccccc
Q 000937 694 YPKI---QE---T-FVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQI-NSKTKADCVNHVLKTIELDGIKESLVG 763 (1218)
Q Consensus 694 ~~~~---~~---~-~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~ 763 (1218)
+++. ++ . ..+.+++++|++ .+.|.+||.+.+.-...... .. .+++..+++.++++.+|+.+-....-.
T Consensus 72 ~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~ 149 (316)
T COG0444 72 KDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKS 149 (316)
T ss_pred cccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhh
Confidence 9742 21 1 235799999996 57899999998876654322 11 244556778899999999865433333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
. +.+|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.++|++|||+. -+.+.+|+++|
T Consensus 150 Y--PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~V 226 (316)
T COG0444 150 Y--PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAV 226 (316)
T ss_pred C--CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEE
Confidence 3 368999999999999999999999999999999999999999999999986 5999999999986 47889999999
Q ss_pred EecCCEEEEEcCCCC
Q 000937 843 LKTGGRIIYSGPLGN 857 (1218)
Q Consensus 843 l~~~G~~~~~g~~~~ 857 (1218)
|. .|++|+.|+..+
T Consensus 227 MY-aG~iVE~g~~~~ 240 (316)
T COG0444 227 MY-AGRIVEEGPVEE 240 (316)
T ss_pred EE-CcEEEEeCCHHH
Confidence 98 699999999753
No 177
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-36 Score=338.87 Aligned_cols=217 Identities=22% Similarity=0.370 Sum_probs=181.7
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 6 ~~l~~~nl~~~~~~------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~ 71 (271)
T PRK13632 6 VMIKVENVSFSYPN------------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGI 71 (271)
T ss_pred eEEEEEeEEEEcCC------------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCE
Confidence 45889999988731 124699999999999999999999999999999999999876 4899999999
Q ss_pred eCcc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
+... ..+++.++|++|++. .++.+||+||+.+..... ....++..++++++++.+++.+..++.+ +.|
T Consensus 72 ~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 143 (271)
T PRK13632 72 TISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNL 143 (271)
T ss_pred ecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccC
Confidence 8642 234567999999974 567799999998864321 1223334556788999999987777664 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||+++|+++ ++ ..+|++++|. +|++
T Consensus 144 S~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~-~G~i 220 (271)
T PRK13632 144 SGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFS-EGKL 220 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999876 599999999986 34 5799999997 6999
Q ss_pred EEEcCCC
Q 000937 850 IYSGPLG 856 (1218)
Q Consensus 850 ~~~g~~~ 856 (1218)
+..|+.+
T Consensus 221 ~~~g~~~ 227 (271)
T PRK13632 221 IAQGKPK 227 (271)
T ss_pred EEecCHH
Confidence 9988753
No 178
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-36 Score=323.64 Aligned_cols=196 Identities=31% Similarity=0.586 Sum_probs=163.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCE
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKVNGY 694 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~ 694 (1218)
.++|+|++|.++.+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|.
T Consensus 3 ~~~~~~~~~~~~~~----------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~ 72 (202)
T cd03233 3 TLSWRNISFTTGKG----------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGI 72 (202)
T ss_pred eEEEEccEEEeccC----------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCE
Confidence 57899999999642 13457999999999999999999999999999999999987732 35899999998
Q ss_pred eCcc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 695 PKIQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 695 ~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
+... ...++.++|++|++.+++.+||+||+.+..... .+.. +..|||
T Consensus 73 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~ 121 (202)
T cd03233 73 PYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISG 121 (202)
T ss_pred ECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCH
Confidence 8643 234567999999999999999999998753210 2222 347999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.+|++++|. +|++++
T Consensus 122 Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~-~G~i~~ 200 (202)
T cd03233 122 GERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLY-EGRQIY 200 (202)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEE-CCEEEe
Confidence 9999999999999999999999999999999999999999999765 67777776654346778899999998 589887
Q ss_pred Ec
Q 000937 852 SG 853 (1218)
Q Consensus 852 ~g 853 (1218)
.|
T Consensus 201 ~g 202 (202)
T cd03233 201 YG 202 (202)
T ss_pred cC
Confidence 54
No 179
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.1e-36 Score=351.14 Aligned_cols=205 Identities=20% Similarity=0.326 Sum_probs=176.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe----Ccc---cc---c-cceEEEec
Q 000937 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP----KIQ---ET---F-VRVSGYCE 709 (1218)
Q Consensus 641 ~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~----~~~---~~---~-~~~~~~v~ 709 (1218)
+...+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++ +.. .. . ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 356789999999999999999999999999999999999887 48999999963 211 11 1 25699999
Q ss_pred cCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc
Q 000937 710 QTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPS 789 (1218)
Q Consensus 710 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~ 789 (1218)
|+..++|++||+||+.++...+ .....+..++++++++.+||.+..+... .+|||||||||+|||+|+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886432 1234455667889999999988777764 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 790 IIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 790 llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
+|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|++++
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~-~G~iv~~g~~~e 251 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIME-GGRIIQHGTPEE 251 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEecCHHH
Confidence 99999999999999999999999999875 999999999986 5678899999997 699999998753
No 180
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=336.39 Aligned_cols=218 Identities=23% Similarity=0.311 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.++
T Consensus 4 ~l~i~~v~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~ 69 (258)
T PRK14241 4 RIDVKDLNIYYG--------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLD 69 (258)
T ss_pred cEEEeeEEEEEC--------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEEC
Confidence 478899998873 246999999999999999999999999999999999987642 248999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 763 (1218)
|+++.. ...++.++|++|+..+++.+||+||+.+....+. ........+.++++++.+++.. ..+..
T Consensus 70 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 145 (258)
T PRK14241 70 GEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP-- 145 (258)
T ss_pred CEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC--
Confidence 987531 2345679999999999999999999988654321 1122334456788899998842 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++
T Consensus 146 ---~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l 220 (258)
T PRK14241 146 ---GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFF 220 (258)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999964 689999999975 567789999999
Q ss_pred e-----cCCEEEEEcCCC
Q 000937 844 K-----TGGRIIYSGPLG 856 (1218)
Q Consensus 844 ~-----~~G~~~~~g~~~ 856 (1218)
. ++|++++.|+++
T Consensus 221 ~~~~~~~~g~i~~~~~~~ 238 (258)
T PRK14241 221 NLEATGKPGRLVEIDDTE 238 (258)
T ss_pred ecccCCCCceEEecCCHH
Confidence 6 358999998753
No 181
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-36 Score=340.70 Aligned_cols=219 Identities=24% Similarity=0.335 Sum_probs=178.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++... ...+++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++
T Consensus 2 ~l~~~~l~~~~~~~~---------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~ 70 (280)
T PRK13649 2 GINLQNVSYTYQAGT---------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTL 70 (280)
T ss_pred eEEEEEEEEEcCCCC---------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 367899999874210 0113699999999999999999999999999999999999876 48999999987
Q ss_pred Ccc-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCC
Q 000937 696 KIQ-------ETFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIP 765 (1218)
Q Consensus 696 ~~~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 765 (1218)
+.. ...++.++|++|++ .+++ .||+||+.+..... ....++..+.++++++.+++. ...+..+
T Consensus 71 i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 143 (280)
T PRK13649 71 ITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP--- 143 (280)
T ss_pred ccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc---
Confidence 532 12356799999986 3444 69999998764322 122333445678889999996 3445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.
T Consensus 144 --~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~- 219 (280)
T PRK13649 144 --FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLE- 219 (280)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEE-
Confidence 579999999999999999999999999999999999999999999999877999999999975 5667899999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|+++
T Consensus 220 ~G~i~~~g~~~ 230 (280)
T PRK13649 220 KGKLVLSGKPK 230 (280)
T ss_pred CCEEEEeCCHH
Confidence 59999988763
No 182
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.9e-36 Score=326.67 Aligned_cols=209 Identities=24% Similarity=0.344 Sum_probs=174.7
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ .+++|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|+++.
T Consensus 2 ~~~~l~~~~~----------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 63 (213)
T TIGR01277 2 ALDKVRYEYE----------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA--SGSIKVNDQSHT 63 (213)
T ss_pred eEEeeeEEeC----------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEcc
Confidence 5788887763 1357999999999999999999999999999999998764 899999998754
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 698 Q-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 698 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
. ...++.++|++|++.+++.+|+.||+.+...... .......++++++++.+++.+..++.+ +.|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 135 (213)
T TIGR01277 64 GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL---KLNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQ 135 (213)
T ss_pred cCChhccceEEEeccCccCCCCcHHHHHHhHhhccC---CccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHH
Confidence 2 2345679999999999999999999987542211 111223456788999999987766654 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcC
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 854 (1218)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +|+++..|.
T Consensus 136 rl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999999999999999999999999999999999765 899999999975 5667899999997 699988774
No 183
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-36 Score=370.09 Aligned_cols=222 Identities=21% Similarity=0.331 Sum_probs=186.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++++.+|+|.++|.+
T Consensus 5 ~l~~~nl~~~~~--------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~ 70 (506)
T PRK13549 5 LLEMKNITKTFG--------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEE 70 (506)
T ss_pred eEEEeeeEEEeC--------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE
Confidence 478999998873 246999999999999999999999999999999999987753358999999988
Q ss_pred Cccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
.... ..++.++|++|++.+++.+||+||+.+....+.......++..++++++++.+++.+..++.+ .+||
T Consensus 71 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 145 (506)
T PRK13549 71 LQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLG 145 (506)
T ss_pred CCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCC
Confidence 6432 124569999999988999999999988643221111122334456889999999987777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 146 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~-~G~i~~ 223 (506)
T PRK13549 146 LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIR-DGRHIG 223 (506)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEE-CCEEee
Confidence 99999999999999999999999999999999999999999999878999999999975 5667899999998 599999
Q ss_pred EcCCCCC
Q 000937 852 SGPLGNH 858 (1218)
Q Consensus 852 ~g~~~~~ 858 (1218)
.|++++.
T Consensus 224 ~~~~~~~ 230 (506)
T PRK13549 224 TRPAAGM 230 (506)
T ss_pred ecccccC
Confidence 9988654
No 184
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-37 Score=326.60 Aligned_cols=203 Identities=22% Similarity=0.328 Sum_probs=183.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---c---c-ccceEEEeccCCCCC
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---E---T-FVRVSGYCEQTDIHS 715 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~---~-~~~~~~~v~q~~~~~ 715 (1218)
..-++|+|++++.||+..|||-||||||||+++|.++.+| +.|+|+++|.++.. . . .++.++.|+|...++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep--t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP--TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 3458999999999999999999999999999999999887 48999999998532 1 2 346799999999999
Q ss_pred CCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000937 716 PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDE 795 (1218)
Q Consensus 716 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDE 795 (1218)
|+.||.||..|+..++. .+++++++++.+.++..||.+..+... .+|||||||||.|||||+.+|+||++||
T Consensus 119 PhrtVl~Nv~fGLev~G---v~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQG---VPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeecC---CCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecC
Confidence 99999999999987663 467788899999999999999988874 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 796 PTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 796 PtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
|+|+|||--+.++.+.|.+|.++ ++|||++|||++ |.+..-||+.+|. +|+++..|++++
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHH
Confidence 99999999999999999999765 999999999997 7889999999997 699999999865
No 185
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=337.80 Aligned_cols=217 Identities=23% Similarity=0.315 Sum_probs=181.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.
T Consensus 6 ~~l~i~~l~~~~~~------------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~ 71 (269)
T PRK13648 6 SIIVFKNVSFQYQS------------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQ 71 (269)
T ss_pred ceEEEEEEEEEcCC------------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCE
Confidence 35889999998742 123589999999999999999999999999999999999876 4899999998
Q ss_pred eCcc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
+... ...++.++|++|++. +++..|+.+|+.+..... ....+...+.++++++.+++.+..+..+ ++|
T Consensus 72 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 143 (269)
T PRK13648 72 AITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NAL 143 (269)
T ss_pred ECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccC
Confidence 7642 234567999999974 677889999998864322 1223334456788999999987776653 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++. .+|++++|. +|++
T Consensus 144 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~-~G~i 220 (269)
T PRK13648 144 SGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMN-KGTV 220 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999765 899999999986 444 599999997 5999
Q ss_pred EEEcCCC
Q 000937 850 IYSGPLG 856 (1218)
Q Consensus 850 ~~~g~~~ 856 (1218)
++.|+++
T Consensus 221 ~~~g~~~ 227 (269)
T PRK13648 221 YKEGTPT 227 (269)
T ss_pred EEecCHH
Confidence 9999864
No 186
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-36 Score=335.60 Aligned_cols=219 Identities=21% Similarity=0.290 Sum_probs=178.6
Q ss_pred CCceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeE
Q 000937 612 FQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGE 688 (1218)
Q Consensus 612 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~~-~~~G~ 688 (1218)
.....++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. +.+|+
T Consensus 9 ~~~~~l~~~~l~~~~~--------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~ 74 (260)
T PRK10744 9 TAPSKIQVRNLNFYYG--------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGE 74 (260)
T ss_pred CCCceEEEEEEEEEeC--------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceE
Confidence 3445689999999873 2369999999999999999999999999999999999865 21 25899
Q ss_pred EEECCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccc
Q 000937 689 IKVNGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKE 759 (1218)
Q Consensus 689 i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~ 759 (1218)
|.++|++... ...++.++|++|+..+++ .|++||+.+...... ....++..++++++++.+++.+ ..+
T Consensus 75 i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (260)
T PRK10744 75 ILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLH 151 (260)
T ss_pred EEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHh
Confidence 9999988631 123567999999988777 899999987653221 1223334456788999998742 233
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce
Q 000937 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDE 839 (1218)
Q Consensus 760 ~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 839 (1218)
.. +.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|+
T Consensus 152 ~~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~ 224 (260)
T PRK10744 152 QS-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDY 224 (260)
T ss_pred cC-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCE
Confidence 32 35899999999999999999999999999999999999999999999996 4789999999975 56678999
Q ss_pred EEEEecCCEEEEEcCC
Q 000937 840 LILLKTGGRIIYSGPL 855 (1218)
Q Consensus 840 ~~~l~~~G~~~~~g~~ 855 (1218)
+++|. +|+++..|+.
T Consensus 225 i~~l~-~G~i~~~g~~ 239 (260)
T PRK10744 225 TAFMY-LGELIEFGNT 239 (260)
T ss_pred EEEEE-CCEEEEeCCH
Confidence 99998 5999999875
No 187
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-36 Score=334.77 Aligned_cols=225 Identities=22% Similarity=0.230 Sum_probs=180.8
Q ss_pred CCCceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceee
Q 000937 611 PFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKG 687 (1218)
Q Consensus 611 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G 687 (1218)
|..+..++++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|
T Consensus 15 ~~~~~~l~~~nl~~~~~--------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G 80 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG--------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTG 80 (267)
T ss_pred CCCCeEEEEeeEEEEEC--------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcce
Confidence 33455789999999873 246999999999999999999999999999999999987531 3589
Q ss_pred EEEECCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccc
Q 000937 688 EIKVNGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLV 762 (1218)
Q Consensus 688 ~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 762 (1218)
+|.++|.+... ...++.++|++|++.+++ .||+||+.++.... .........+++.++++.+++.+..+...
T Consensus 81 ~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~ 157 (267)
T PRK14237 81 QILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL 157 (267)
T ss_pred EEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh
Confidence 99999988632 123567999999988877 69999998864321 11122334456788899988853211111
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
.. .+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ ++.|||++||+++ ++.+.+|++++
T Consensus 158 ~~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~ 234 (267)
T PRK14237 158 HK-SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAF 234 (267)
T ss_pred cC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEE
Confidence 11 246899999999999999999999999999999999999999999999985 4799999999985 56788999999
Q ss_pred EecCCEEEEEcCCC
Q 000937 843 LKTGGRIIYSGPLG 856 (1218)
Q Consensus 843 l~~~G~~~~~g~~~ 856 (1218)
|. +|+++..|++.
T Consensus 235 l~-~G~i~~~g~~~ 247 (267)
T PRK14237 235 FY-LGDLIEYDKTR 247 (267)
T ss_pred EE-CCEEEEeCCHH
Confidence 97 69999999863
No 188
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.2e-36 Score=331.12 Aligned_cols=198 Identities=21% Similarity=0.331 Sum_probs=167.2
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHHHHH
Q 000937 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLF 725 (1218)
Q Consensus 646 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 725 (1218)
|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|++..... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999999876 4899999998864321 12489999999999999999998
Q ss_pred HHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000937 726 FSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAA 805 (1218)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~ 805 (1218)
+...... ......+..++++++++.+++.+..++.+ .+||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 8632111 11223334556788999999987766654 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 806 AIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 806 ~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|++
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLT-NGPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEe-CCcEecccCc
Confidence 9999999999765 899999999985 5677899999998 5999988864
No 189
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-36 Score=328.99 Aligned_cols=212 Identities=26% Similarity=0.384 Sum_probs=180.2
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
.++|+++.++ .+.+++|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|++..
T Consensus 2 ~~~~l~~~~~--------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~--~G~i~~~g~~~~ 65 (232)
T cd03300 2 ELENVSKFYG--------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDIT 65 (232)
T ss_pred EEEeEEEEeC--------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEcC
Confidence 5788888773 246999999999999999999999999999999999998764 899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 698 QE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 698 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
.. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.. ..||+||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (232)
T cd03300 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQ 137 (232)
T ss_pred cCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 31 234679999999999889999999988654331 122333456788999999987777654 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|+++++. +|++++.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~-~G~~~~~~~~ 215 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMN-KGKIQQIGTP 215 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEecCCH
Confidence 999999999999999999999999999999999999999875 999999999975 5677899999998 5899988864
No 190
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-36 Score=319.49 Aligned_cols=190 Identities=58% Similarity=0.975 Sum_probs=161.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++.. .+++++|+|+|+++++||+++|+||||||||||+++|+|+.+..+.+|+|.++|++
T Consensus 3 ~l~~~~l~~~~~~~----------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~ 72 (192)
T cd03232 3 VLTWKNLNYTVPVK----------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRP 72 (192)
T ss_pred EEEEeeeEEEecCC----------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEe
Confidence 46899999988421 01246999999999999999999999999999999999975322258999999988
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
.. ...++.++|++|++.+++.+|++||+.+...+ + +||||||
T Consensus 73 ~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~ 114 (192)
T cd03232 73 LD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQR 114 (192)
T ss_pred hH-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHh
Confidence 64 33456799999999889999999999864210 0 4999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++.++.+.+|++++|.++|++++.|
T Consensus 115 qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 115 KRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999999999987799999999998644678899999997438998865
No 191
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-36 Score=349.57 Aligned_cols=214 Identities=29% Similarity=0.491 Sum_probs=180.6
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
++.++.+|+++.++. .+++++|+|+++++|+.+||+|+||||||||+++|+|+.++ .+|+|.+||
T Consensus 318 ~~ei~~~~l~~~y~~-------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 318 PIEISLENLSFRYPD-------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CceeeecceEEecCC-------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 567778899998853 23799999999999999999999999999999999999887 489999999
Q ss_pred EeCc---cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc------cccccccC
Q 000937 694 YPKI---QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG------IKESLVGI 764 (1218)
Q Consensus 694 ~~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~------~~~~~~~~ 764 (1218)
.+.. ...++++++||+|++.+++ -|++||+.++. ++.+ ++.+.++++..++.+ -.|+.+|+
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8753 4568899999999998876 59999998752 1112 234556666666544 34666776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ++|||||+|||++||||+.+++++++||||++||.++++.|.+.|.++++ ++|+|++||++ .....+|++++|+
T Consensus 453 ~G-~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl--~~~~~~D~I~vld 528 (559)
T COG4988 453 GG-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRL--EDAADADRIVVLD 528 (559)
T ss_pred CC-CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcCh--HHHhcCCEEEEec
Confidence 54 68999999999999999999999999999999999999999999999986 59999999987 4577899999998
Q ss_pred cCCEEEEEcCCCC
Q 000937 845 TGGRIIYSGPLGN 857 (1218)
Q Consensus 845 ~~G~~~~~g~~~~ 857 (1218)
+|+++..|..++
T Consensus 529 -~G~l~~~g~~~~ 540 (559)
T COG4988 529 -NGRLVEQGTHEE 540 (559)
T ss_pred -CCceeccCCHHH
Confidence 599999998754
No 192
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-36 Score=334.92 Aligned_cols=217 Identities=24% Similarity=0.278 Sum_probs=177.4
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~ 691 (1218)
..++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.+
T Consensus 18 ~~l~~~nl~~~~~--------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~ 83 (267)
T PRK14235 18 IKMRARDVSVFYG--------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITL 83 (267)
T ss_pred ceEEEEeEEEEEC--------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEE
Confidence 3689999999873 246999999999999999999999999999999999987541 25899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc----ccccc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI----KESLV 762 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~ 762 (1218)
+|+++.. ..+++.++|++|++.+++. ||.||+.+....+.. .....+..++++++++.+++.+. .+..
T Consensus 84 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 160 (267)
T PRK14235 84 DGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP- 160 (267)
T ss_pred CCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC-
Confidence 9988632 1245679999999888774 999999987543211 01122334567888999998542 2332
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++
T Consensus 161 ----~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~ 234 (267)
T PRK14235 161 ----GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAF 234 (267)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEE
Confidence 358999999999999999999999999999999999999999999999865 789999999975 56678899999
Q ss_pred EecCCEEEEEcCC
Q 000937 843 LKTGGRIIYSGPL 855 (1218)
Q Consensus 843 l~~~G~~~~~g~~ 855 (1218)
|. +|+++..|+.
T Consensus 235 l~-~G~i~~~g~~ 246 (267)
T PRK14235 235 FH-LGNLVEVGDT 246 (267)
T ss_pred EE-CCEEEEeCCH
Confidence 97 5999999875
No 193
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=332.35 Aligned_cols=209 Identities=22% Similarity=0.328 Sum_probs=175.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~--------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 66 (241)
T PRK14250 3 EIEFKEVSYSSF--------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVD 66 (241)
T ss_pred eEEEEeEEEEeC--------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEE
Confidence 478899998873 24699999999999999999999999999999999998876 48999999987
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LS 771 (1218)
+.. ...++.++|++|++.+++ .||+||+.+....+ . ...++++++++.+++. +..++. +..||
T Consensus 67 i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 133 (241)
T PRK14250 67 IKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRD-----VKNLS 133 (241)
T ss_pred hhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCC-----cccCC
Confidence 532 234567999999988776 69999997653221 1 1234577889999996 455544 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 134 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~ 211 (241)
T PRK14250 134 GGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLN-KGILV 211 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEe-CCEEE
Confidence 99999999999999999999999999999999999999999999874 999999999975 5667899999998 58999
Q ss_pred EEcCC
Q 000937 851 YSGPL 855 (1218)
Q Consensus 851 ~~g~~ 855 (1218)
..|++
T Consensus 212 ~~~~~ 216 (241)
T PRK14250 212 EYAKT 216 (241)
T ss_pred EeCCH
Confidence 88875
No 194
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=349.54 Aligned_cols=192 Identities=26% Similarity=0.423 Sum_probs=168.6
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc-------ccccceEEEeccCCCCCCCCCH
Q 000937 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-------ETFVRVSGYCEQTDIHSPHITI 720 (1218)
Q Consensus 648 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 720 (1218)
|+|+++++||+++|+|||||||||||++|+|+.+|. +|+|.++|++... ...++.++|++|+..+++++||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~--~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ--KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 899999999999999999999999999999998764 8999999987532 1235679999999999999999
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000937 721 EESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGL 800 (1218)
Q Consensus 721 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgL 800 (1218)
+||+.++.. ....++++++++.+++.+..++.+ .+|||||||||+|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988532 122356788999999988777664 489999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 801 DARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 801 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
|+.++..+.+.|++++++ |+|+|++||+++ ++...+|++++|. +|+++..|++++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~-~G~i~~~g~~~~ 215 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLE-QGKVKAFGPLEE 215 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEe-CCEEEEecCHHH
Confidence 999999999999999876 899999999985 6778899999998 599999998643
No 195
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-36 Score=336.58 Aligned_cols=219 Identities=23% Similarity=0.359 Sum_probs=178.6
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC------ceeeEEE
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG------CFKGEIK 690 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~------~~~G~i~ 690 (1218)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++. ..+|+|.
T Consensus 2 l~~~nl~~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~ 67 (272)
T PRK13547 2 LTADHLHVARR--------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVT 67 (272)
T ss_pred eEEEEEEEEEC--------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEE
Confidence 57889988773 246999999999999999999999999999999999987753 1279999
Q ss_pred ECCEeCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCC
Q 000937 691 VNGYPKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPG 766 (1218)
Q Consensus 691 ~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 766 (1218)
++|.+... ...++.++|++|++..++.+||+||+.+....... ......+..+.++++++.+++.+..++.+
T Consensus 68 ~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 143 (272)
T PRK13547 68 LNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV---- 143 (272)
T ss_pred ECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 99987532 23345689999998766679999999875321100 01111233456788999999987666553
Q ss_pred CCCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHh
Q 000937 767 VSGLSTEQRKRLTIGVELV---------ANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFES 836 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~ 836 (1218)
..|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.
T Consensus 144 -~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~ 221 (272)
T PRK13547 144 -TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARH 221 (272)
T ss_pred -ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHh
Confidence 579999999999999999 599999999999999999999999999999876 899999999985 56678
Q ss_pred hceEEEEecCCEEEEEcCCC
Q 000937 837 FDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 837 ~d~~~~l~~~G~~~~~g~~~ 856 (1218)
+|++++|. +|+++..|+++
T Consensus 222 ~d~i~~l~-~G~i~~~g~~~ 240 (272)
T PRK13547 222 ADRIAMLA-DGAIVAHGAPA 240 (272)
T ss_pred CCEEEEEE-CCeEEEecCHH
Confidence 99999998 59999999864
No 196
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-36 Score=343.90 Aligned_cols=227 Identities=16% Similarity=0.231 Sum_probs=179.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--CceeeEEEECC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTS--GCFKGEIKVNG 693 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~--~~~~G~i~~~g 693 (1218)
.++++|+++.++.. .+.+.+|+|||++|++||+++|+|+||||||||+++|+|+.++ .+.+|+|.++|
T Consensus 3 ~L~v~~l~~~y~~~----------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g 72 (330)
T PRK15093 3 LLDIRNLTIEFKTS----------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDD 72 (330)
T ss_pred eEEEeeeEEEEeCC----------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECC
Confidence 37899999988532 1235799999999999999999999999999999999998753 13589999999
Q ss_pred EeCcc---cc----ccceEEEeccCCC--CCCCCCHHHHHHHHHhhccCC-C--CChhhHHHHHHHHHHHcCCCcccccc
Q 000937 694 YPKIQ---ET----FVRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAP-Q--INSKTKADCVNHVLKTIELDGIKESL 761 (1218)
Q Consensus 694 ~~~~~---~~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~-~--~~~~~~~~~~~~~l~~l~l~~~~~~~ 761 (1218)
+++.. .. .++.++||+|++. +.|.+||.+++.......... . ....+..+++.++++.+||.+..+..
T Consensus 73 ~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~ 152 (330)
T PRK15093 73 IDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM 152 (330)
T ss_pred EECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH
Confidence 98542 11 1346999999975 678899999997643211100 0 01123345788999999997532211
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceE
Q 000937 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDEL 840 (1218)
Q Consensus 762 ~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~ 840 (1218)
- ..+.+|||||||||+||+||+.+|++|+|||||+|||+.++.+++++|+++.++ |.|||++|||++ .+.+.+|++
T Consensus 153 ~--~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri 229 (330)
T PRK15093 153 R--SFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKI 229 (330)
T ss_pred h--CCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEE
Confidence 1 113589999999999999999999999999999999999999999999999875 999999999975 566789999
Q ss_pred EEEecCCEEEEEcCCC
Q 000937 841 ILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 841 ~~l~~~G~~~~~g~~~ 856 (1218)
++|. +|++++.|+.+
T Consensus 230 ~vm~-~G~ive~g~~~ 244 (330)
T PRK15093 230 NVLY-CGQTVETAPSK 244 (330)
T ss_pred EEEE-CCEEEEECCHH
Confidence 9998 69999999864
No 197
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.7e-36 Score=350.09 Aligned_cols=195 Identities=26% Similarity=0.429 Sum_probs=169.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc-------ccccceEEEeccCCCCCCCCCH
Q 000937 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-------ETFVRVSGYCEQTDIHSPHITI 720 (1218)
Q Consensus 648 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 720 (1218)
|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|++... ...++.++|++|++.+++++||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 99999999999999999999999999999999876 48999999987532 1235679999999999999999
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000937 721 EESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGL 800 (1218)
Q Consensus 721 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgL 800 (1218)
+||+.|+.... ...+..++++++++.++|.+..++.. .+|||||||||+|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999865321 12233456889999999988777664 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 801 DARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 801 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
|+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|+++..|+++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 217 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLE-DGRVAAAGPIA 217 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEEECCHH
Confidence 999999999999999876 899999999985 6677899999998 59999999864
No 198
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-36 Score=333.67 Aligned_cols=221 Identities=21% Similarity=0.287 Sum_probs=178.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~~ 692 (1218)
.++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|+.+ |. +.+|+|.++
T Consensus 4 ~l~~~nl~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 69 (252)
T PRK14256 4 KVKLEQLNVHFG--------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLD 69 (252)
T ss_pred EEEEEEEEEEeC--------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEEC
Confidence 478999998873 2469999999999999999999999999999999999864 31 247999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
|+++.. ...++.++|++|+..+++.+|++||+.+...... ........++++++++.+++....+.... ..+
T Consensus 70 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 146 (252)
T PRK14256 70 DTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNA 146 (252)
T ss_pred CEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987632 1345679999999999999999999987643221 11222334567888889988542111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|
T Consensus 147 ~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G 223 (252)
T PRK14256 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY-MG 223 (252)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE-CC
Confidence 58999999999999999999999999999999999999999999999975 689999999975 5668899999997 69
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
+++..|+.+
T Consensus 224 ~i~~~~~~~ 232 (252)
T PRK14256 224 DLVECGETK 232 (252)
T ss_pred EEEEeCCHH
Confidence 999998853
No 199
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5.9e-36 Score=329.53 Aligned_cols=213 Identities=26% Similarity=0.420 Sum_probs=180.5
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 ~i~~l~~~~~--------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~ 65 (237)
T TIGR00968 2 EIANISKRFG--------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDAT 65 (237)
T ss_pred EEEEEEEEEC--------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcC
Confidence 5788888773 24699999999999999999999999999999999998776 4899999998864
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 698 QE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 698 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
.. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.. +.||+||+|
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (237)
T TIGR00968 66 RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQ 137 (237)
T ss_pred cCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHH
Confidence 32 234679999999999999999999987654321 122333456788999999987766654 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 215 (237)
T TIGR00968 138 RVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSP 215 (237)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCH
Confidence 999999999999999999999999999999999999999876 899999999975 5677899999997 6999999886
Q ss_pred C
Q 000937 856 G 856 (1218)
Q Consensus 856 ~ 856 (1218)
+
T Consensus 216 ~ 216 (237)
T TIGR00968 216 D 216 (237)
T ss_pred H
Confidence 4
No 200
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-36 Score=339.70 Aligned_cols=220 Identities=22% Similarity=0.322 Sum_probs=181.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++.... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~~~~--------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~ 73 (280)
T PRK13633 4 MIKCKNVSYKYESNEE--------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLD 73 (280)
T ss_pred eEEEeeeEEEcCCCCC--------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEe
Confidence 4789999998852100 0124699999999999999999999999999999999999876 48999999988
Q ss_pred Ccc----ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 696 KIQ----ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 696 ~~~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
+.. ...++.++|++|++. .+...||.||+.|..... .....+..++++++++.+||.+..++.+ .+|
T Consensus 74 i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 145 (280)
T PRK13633 74 TSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLL 145 (280)
T ss_pred ccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccC
Confidence 642 224567999999864 233579999998875422 1223344567889999999988777764 489
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|. +|++
T Consensus 146 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~-~~~d~v~~l~-~G~i 222 (280)
T PRK13633 146 SGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EA-VEADRIIVMD-SGKV 222 (280)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HH-hcCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999764 999999999986 34 4599999997 5999
Q ss_pred EEEcCCC
Q 000937 850 IYSGPLG 856 (1218)
Q Consensus 850 ~~~g~~~ 856 (1218)
+..|+++
T Consensus 223 ~~~g~~~ 229 (280)
T PRK13633 223 VMEGTPK 229 (280)
T ss_pred EEecCHH
Confidence 9999864
No 201
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-36 Score=338.26 Aligned_cols=219 Identities=21% Similarity=0.315 Sum_probs=181.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCc-eeeEEEECC
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGC-FKGEIKVNG 693 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~-~~G~i~~~g 693 (1218)
..++++|+++.++. ..+++++|+|+++++||+++|+||||||||||+++|+|..+|.. .+|+|.++|
T Consensus 4 ~~l~i~~l~~~~~~------------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g 71 (282)
T PRK13640 4 NIVEFKHVSFTYPD------------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG 71 (282)
T ss_pred ceEEEEEEEEEcCC------------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECC
Confidence 35889999998741 12369999999999999999999999999999999999887631 139999999
Q ss_pred EeCcc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000937 694 YPKIQ---ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769 (1218)
Q Consensus 694 ~~~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 769 (1218)
.+... ...++.+||++|++. .++..||.||+.|..... ....++..++++++++.++|.+..+... +.
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 143 (282)
T PRK13640 72 ITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----AN 143 (282)
T ss_pred EECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----cc
Confidence 98643 123467999999974 667899999998764322 1234444567888999999987777664 58
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 770 LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..+|++++|. +|+
T Consensus 144 LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~-~G~ 220 (282)
T PRK13640 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLD-DGK 220 (282)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999865 999999999985 34 6799999997 699
Q ss_pred EEEEcCCC
Q 000937 849 IIYSGPLG 856 (1218)
Q Consensus 849 ~~~~g~~~ 856 (1218)
+++.|+++
T Consensus 221 i~~~g~~~ 228 (282)
T PRK13640 221 LLAQGSPV 228 (282)
T ss_pred EEEeCCHH
Confidence 99999863
No 202
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-36 Score=339.61 Aligned_cols=220 Identities=20% Similarity=0.323 Sum_probs=178.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~l~i~nl~~~~~~~~---------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 74 (289)
T PRK13645 6 DIILDNVSYTYAKKT---------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYA 74 (289)
T ss_pred eEEEEEEEEEeCCCC---------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 478999999884210 0013599999999999999999999999999999999999876 48999999987
Q ss_pred Ccc--------ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCC
Q 000937 696 KIQ--------ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIP 765 (1218)
Q Consensus 696 ~~~--------~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 765 (1218)
... ...++.++|++|++. .+...|++||+.+..... ....+...++++++++.++|. +..++.+
T Consensus 75 i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~--- 148 (289)
T PRK13645 75 IPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP--- 148 (289)
T ss_pred ccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh---
Confidence 531 224567999999863 223469999998864321 122333345677889999994 5556553
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.
T Consensus 149 --~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~ 225 (289)
T PRK13645 149 --FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMH 225 (289)
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 479999999999999999999999999999999999999999999999764 899999999975 5678899999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|+++
T Consensus 226 -~G~i~~~g~~~ 236 (289)
T PRK13645 226 -EGKVISIGSPF 236 (289)
T ss_pred -CCEEEEeCCHH
Confidence 59999988753
No 203
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-36 Score=331.48 Aligned_cols=219 Identities=21% Similarity=0.257 Sum_probs=175.6
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-CceeeEEEECCEe
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTS-GCFKGEIKVNGYP 695 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~-~~~~G~i~~~g~~ 695 (1218)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+.+|+|.++|++
T Consensus 3 ~~~~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~ 68 (246)
T PRK14269 3 AKTTNLNLFYG--------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKD 68 (246)
T ss_pred eeeeeeEEEEC--------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEe
Confidence 57889988873 24699999999999999999999999999999999998642 2358999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
+.. ...++.++|++|++.+++ .|++||+.+....+... .......++++++++.+++......... ...+.|||
T Consensus 69 i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~ 145 (246)
T PRK14269 69 VKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSG 145 (246)
T ss_pred cccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCH
Confidence 643 234567999999988887 69999998865332110 0122334557788999998532111111 11357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.+|++++|. +|+++..
T Consensus 146 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~ 222 (246)
T PRK14269 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFH-LGELIEF 222 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEE-CCEEEEE
Confidence 999999999999999999999999999999999999999999865 899999999975 5677899999998 6999999
Q ss_pred cCC
Q 000937 853 GPL 855 (1218)
Q Consensus 853 g~~ 855 (1218)
|+.
T Consensus 223 g~~ 225 (246)
T PRK14269 223 GES 225 (246)
T ss_pred CCH
Confidence 875
No 204
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4e-36 Score=324.40 Aligned_cols=189 Identities=26% Similarity=0.388 Sum_probs=161.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc---c----ccccceEEEeccCCCCC
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI---Q----ETFVRVSGYCEQTDIHS 715 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~---~----~~~~~~~~~v~q~~~~~ 715 (1218)
+++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 4699999999999999999999999999999999999876 4899999998742 1 12346799999999999
Q ss_pred CCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000937 716 PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDE 795 (1218)
Q Consensus 716 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDE 795 (1218)
+.+|++||+.+..... .....+..+.++++++.+++.+..++.+ .+||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 1223334566888999999987777664 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 796 PTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 796 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
||+|||+.++..+.+.|++++++|+|+|++||++. ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999877999999999974 45788988764
No 205
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-36 Score=324.82 Aligned_cols=191 Identities=25% Similarity=0.408 Sum_probs=163.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc-------ccccceEEEeccCCCCCCCCCH
Q 000937 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-------ETFVRVSGYCEQTDIHSPHITI 720 (1218)
Q Consensus 648 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 720 (1218)
|+|+++++ |+++|+||||||||||+++|+|..+| .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 99999999999999999999999876 48999999987531 1234679999999999999999
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000937 721 EESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGL 800 (1218)
Q Consensus 721 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgL 800 (1218)
+||+.+..... .....+++++++++.+++.+..+..+ .+||||||||++||++|+.+|++++|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 12233456788999999987666553 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 801 DARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 801 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVME-DGRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 999999999999999876 899999999975 5667899999998 58988765
No 206
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.1e-36 Score=374.01 Aligned_cols=215 Identities=27% Similarity=0.444 Sum_probs=179.8
Q ss_pred CceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC
Q 000937 613 QPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVN 692 (1218)
Q Consensus 613 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~ 692 (1218)
..-.++++|++|.+.. ....+|+|+|++|+|||.+||+|+||||||||+|+|+|+++| .+|+|++|
T Consensus 468 ~~g~I~~~nvsf~y~~------------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I~~d 533 (709)
T COG2274 468 LQGEIEFENVSFRYGP------------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRILLD 533 (709)
T ss_pred cCceEEEEEEEEEeCC------------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEEC
Confidence 4457999999999963 223699999999999999999999999999999999999987 48999999
Q ss_pred CEeCc---cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHH-------cCCCccccccc
Q 000937 693 GYPKI---QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKT-------IELDGIKESLV 762 (1218)
Q Consensus 693 g~~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-------l~l~~~~~~~~ 762 (1218)
|.+.. ....|+.+|||+|++.++. -|++||+.++. +..+.++ +.++++. ..+..-.|+.+
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e~----i~~A~~~ag~~~fI~~lP~gy~t~v 603 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDEE----IIEAAQLAGAHEFIENLPMGYDTPV 603 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHHH----HHHHHHHhCcHHHHHhccccccccc
Confidence 99854 3567899999999988765 69999998742 2222222 2222222 24455577888
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
|..+ .+||||||||++|||||+++|+||+||||||+||+.+++.|.+.|.++. +|+|+|+++|+++ ..+.+|++++
T Consensus 604 ~E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiV 679 (709)
T COG2274 604 GEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIV 679 (709)
T ss_pred ccCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEE
Confidence 8765 5799999999999999999999999999999999999999999999985 4799999999874 6899999999
Q ss_pred EecCCEEEEEcCCC
Q 000937 843 LKTGGRIIYSGPLG 856 (1218)
Q Consensus 843 l~~~G~~~~~g~~~ 856 (1218)
|+ +|+++.+|+.+
T Consensus 680 l~-~Gkiv~~gs~~ 692 (709)
T COG2274 680 LD-QGKIVEQGSHE 692 (709)
T ss_pred cc-CCceeccCCHH
Confidence 98 69999999974
No 207
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-36 Score=334.69 Aligned_cols=215 Identities=23% Similarity=0.285 Sum_probs=175.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~ 691 (1218)
..++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|+.++. +.+|+|.+
T Consensus 12 ~~l~i~nl~~~~~--------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~ 77 (269)
T PRK14259 12 IIISLQNVTISYG--------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLF 77 (269)
T ss_pred ceEEEEeEEEEEC--------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence 4689999999873 246999999999999999999999999999999999986521 25899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----cccccc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLV 762 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~ 762 (1218)
+|.++.. ...++.++|++|++.+++ .||+||+.+.+..+. .. ....+.++++++.+++.. ..+..
T Consensus 78 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~- 151 (269)
T PRK14259 78 DGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNES- 151 (269)
T ss_pred CCEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC-
Confidence 9987531 234567999999988887 499999988754321 11 123345677888887742 23333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 152 ----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~ 225 (269)
T PRK14259 152 ----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAF 225 (269)
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEE
Confidence 358999999999999999999999999999999999999999999999864 799999999985 67789999999
Q ss_pred Eec----------CCEEEEEcCC
Q 000937 843 LKT----------GGRIIYSGPL 855 (1218)
Q Consensus 843 l~~----------~G~~~~~g~~ 855 (1218)
|.+ .|++++.|++
T Consensus 226 l~~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 226 FNAEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred EeccccccccccccceEEEeCCH
Confidence 984 2678888876
No 208
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-36 Score=328.13 Aligned_cols=212 Identities=23% Similarity=0.332 Sum_probs=176.9
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++. + ..|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.
T Consensus 2 l~~~~l~~~~~~--------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 63 (232)
T PRK10771 2 LKLTDITWLYHH--------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDH 63 (232)
T ss_pred eEEEEEEEEECC--------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeec
Confidence 578899988741 1 2389999999999999999999999999999999876 489999999875
Q ss_pred ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 697 IQE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 697 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
... ..++.++|++|++.+++.+|+.||+.+..... .. ..+...++++++++.+++.+..++.+ ..||||||
T Consensus 64 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 135 (232)
T PRK10771 64 TTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LK-LNAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQR 135 (232)
T ss_pred CcCChhhccEEEEecccccccCCcHHHHHhcccccc--cC-CCHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHH
Confidence 431 22456999999999999999999998753211 01 12233456888999999987777764 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcC
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 854 (1218)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +|++++.|+
T Consensus 136 qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~g~ 213 (232)
T PRK10771 136 QRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVA-DGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCC
Confidence 9999999999999999999999999999999999999998764 899999999985 5667899999998 599999987
Q ss_pred CC
Q 000937 855 LG 856 (1218)
Q Consensus 855 ~~ 856 (1218)
.+
T Consensus 214 ~~ 215 (232)
T PRK10771 214 TD 215 (232)
T ss_pred HH
Confidence 53
No 209
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=9.6e-36 Score=317.01 Aligned_cols=190 Identities=51% Similarity=0.869 Sum_probs=162.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCceeeEEEECC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGCFKGEIKVNG 693 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~--~~~~~~G~i~~~g 693 (1218)
.++++|+++.++... ....+.+++|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|
T Consensus 3 ~l~~~~ls~~~~~~~--------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G~i~~~g 72 (194)
T cd03213 3 TLSFRNLTVTVKSSP--------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG--VSGEVLING 72 (194)
T ss_pred EEEEEeeEEEEecCC--------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--CceEEEECC
Confidence 578999999885210 001246999999999999999999999999999999999987 65 489999999
Q ss_pred EeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 694 YPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 694 ~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
++......++.++|++|++.+++.+|++||+.+..... .||||
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G 115 (194)
T cd03213 73 RPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGG 115 (194)
T ss_pred EeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHH
Confidence 98654345677999999998899999999997642100 49999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|+++.++.+.+|++++|. +|++++.|
T Consensus 116 ~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~-~G~i~~~~ 194 (194)
T cd03213 116 ERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLS-QGRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEe-CCEEEecC
Confidence 99999999999999999999999999999999999999999987799999999998645778899999998 58988654
No 210
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-35 Score=326.95 Aligned_cols=212 Identities=23% Similarity=0.364 Sum_probs=178.7
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.+. . ++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~ 64 (235)
T cd03299 2 KVENLSKDWK--------------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDIT 64 (235)
T ss_pred eeEeEEEEeC--------------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcC
Confidence 5677777662 1 379999999999999999999999999999999998876 4899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 698 QE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 698 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
.. ..++.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.+++.+..++.+ +.|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (235)
T cd03299 65 NLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQ 136 (235)
T ss_pred cCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHH
Confidence 31 23467999999999999999999998764322 1122334456778899999987777664 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.+|++++|. +|+++..|+.
T Consensus 137 rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 214 (235)
T cd03299 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIML-NGKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEecCH
Confidence 999999999999999999999999999999999999998765 999999999985 5677899999997 5899999875
Q ss_pred C
Q 000937 856 G 856 (1218)
Q Consensus 856 ~ 856 (1218)
+
T Consensus 215 ~ 215 (235)
T cd03299 215 E 215 (235)
T ss_pred H
Confidence 3
No 211
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=7.3e-36 Score=328.37 Aligned_cols=200 Identities=27% Similarity=0.433 Sum_probs=168.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc--ccccceEEEec-cCCCCCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ--ETFVRVSGYCE-QTDIHSPHI 718 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~l 718 (1218)
.+++|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+... ...++.++|++ |++.+++.+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 110 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCCCC
Confidence 45799999999999999999999999999999999998876 48999999987432 23456789997 556778899
Q ss_pred CHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000937 719 TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798 (1218)
Q Consensus 719 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPts 798 (1218)
|++|++.+...... ....+..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||+
T Consensus 111 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 111 PVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99999988654321 223334456778899999987777764 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 799 GLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 799 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVID-KGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEecC
Confidence 99999999999999999765 899999999975 5667899999997 58988654
No 212
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-36 Score=335.63 Aligned_cols=217 Identities=21% Similarity=0.343 Sum_probs=181.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++
T Consensus 4 ~l~~~~l~~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~ 70 (277)
T PRK13642 4 ILEVENLVFKYEKE-----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGEL 70 (277)
T ss_pred eEEEEEEEEEcCCC-----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEE
Confidence 47899999988421 123599999999999999999999999999999999999876 48999999988
Q ss_pred Ccc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+.. ...++.++|++|++. .++..||.||+.+..... ....++..++++++++.+++.+..++.+ ..||
T Consensus 71 i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (277)
T PRK13642 71 LTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLS 142 (277)
T ss_pred CCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 643 234567999999974 577789999998764321 1223334456788999999987766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|. +|+++
T Consensus 143 ~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~-~G~i~ 219 (277)
T PRK13642 143 GGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMK-AGEII 219 (277)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999876 999999999975 34 4699999998 58999
Q ss_pred EEcCCC
Q 000937 851 YSGPLG 856 (1218)
Q Consensus 851 ~~g~~~ 856 (1218)
..|+++
T Consensus 220 ~~g~~~ 225 (277)
T PRK13642 220 KEAAPS 225 (277)
T ss_pred EeCCHH
Confidence 999863
No 213
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-36 Score=332.79 Aligned_cols=216 Identities=21% Similarity=0.297 Sum_probs=176.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~~ 692 (1218)
.++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|..+ |. +.+|+|.++
T Consensus 12 ~l~i~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~ 77 (259)
T PRK14274 12 VYQINGMNLWYG--------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYN 77 (259)
T ss_pred eEEEeeEEEEEC--------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEEC
Confidence 589999999873 2469999999999999999999999999999999999865 21 147999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc----cccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI----KESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~ 763 (1218)
|++... ...++.++|++|++.+++. ||+||+.+...... .....+..++++++++.+++.+. .+..
T Consensus 78 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~-- 152 (259)
T PRK14274 78 GSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ-- 152 (259)
T ss_pred CEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCC--
Confidence 997632 1335679999999888875 99999987643321 11223334567788888888532 2332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|++++|
T Consensus 153 ---~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 227 (259)
T PRK14274 153 ---ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFF 227 (259)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999865 799999999975 567789999999
Q ss_pred ecCCEEEEEcCCC
Q 000937 844 KTGGRIIYSGPLG 856 (1218)
Q Consensus 844 ~~~G~~~~~g~~~ 856 (1218)
. +|+++..|+++
T Consensus 228 ~-~G~i~~~g~~~ 239 (259)
T PRK14274 228 Y-MGELVECNDTN 239 (259)
T ss_pred E-CCEEEEECCHH
Confidence 7 69999999863
No 214
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1e-35 Score=333.37 Aligned_cols=224 Identities=18% Similarity=0.262 Sum_probs=180.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++++..+... ...+.+++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~~~~~-----~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 76 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGW-----FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHP 76 (267)
T ss_pred eEEEeceEEEecCCCCc-----ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEE
Confidence 37899999988421100 000124699999999999999999999999999999999999877 48999999987
Q ss_pred Cccc---cccceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCC
Q 000937 696 KIQE---TFVRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSG 769 (1218)
Q Consensus 696 ~~~~---~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~ 769 (1218)
.... ..++.++|++|++. +++.+|+.|++.+...... ........+.++++++.+++. +..+..+ .+
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 149 (267)
T PRK15112 77 LHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HM 149 (267)
T ss_pred CCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hh
Confidence 6421 22356999999874 5678899999987654321 112333445678899999994 4555543 47
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 770 LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|+
T Consensus 150 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~-~G~ 227 (267)
T PRK15112 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMH-QGE 227 (267)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999865 899999999985 5667799999997 699
Q ss_pred EEEEcCC
Q 000937 849 IIYSGPL 855 (1218)
Q Consensus 849 ~~~~g~~ 855 (1218)
++..|+.
T Consensus 228 i~~~~~~ 234 (267)
T PRK15112 228 VVERGST 234 (267)
T ss_pred EEecCCH
Confidence 9988875
No 215
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7.2e-36 Score=364.76 Aligned_cols=220 Identities=25% Similarity=0.364 Sum_probs=185.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||||+|+|..+|. +|+|.++|.+
T Consensus 4 ~i~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~G~i~~~g~~ 67 (501)
T PRK10762 4 LLQLKGIDKAFP--------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD--AGSILYLGKE 67 (501)
T ss_pred eEEEeeeEEEeC--------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEE
Confidence 378999998873 246999999999999999999999999999999999998764 8999999987
Q ss_pred Cccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 696 KIQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 696 ~~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
.... ..++.++|++|++.+++.+||+||+.++...... ......+.+++++++++.+++.+..+..+ .+|
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (501)
T PRK10762 68 VTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GEL 142 (501)
T ss_pred CCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhC
Confidence 5321 1235699999999899999999999886432110 11122333456788999999988777664 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 143 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~-~G~i~ 220 (501)
T PRK10762 143 SIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFR-DGQFI 220 (501)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEE
Confidence 999999999999999999999999999999999999999999999877999999999985 5677899999998 59999
Q ss_pred EEcCCCCC
Q 000937 851 YSGPLGNH 858 (1218)
Q Consensus 851 ~~g~~~~~ 858 (1218)
..|++++.
T Consensus 221 ~~~~~~~~ 228 (501)
T PRK10762 221 AEREVADL 228 (501)
T ss_pred EecCcCcC
Confidence 99987654
No 216
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=329.27 Aligned_cols=217 Identities=24% Similarity=0.264 Sum_probs=177.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~ 691 (1218)
+.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.+
T Consensus 3 ~~l~~~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~ 68 (251)
T PRK14270 3 IKMESKNLNLWYG--------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLL 68 (251)
T ss_pred cEEEEEEeEEEEC--------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEE
Confidence 3578999998773 246999999999999999999999999999999999986541 24899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----cccccc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLV 762 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~ 762 (1218)
+|.++.. ...++.++|++|++.+++ .|++||+.+...... ........++++++++.+++.+ ..+..
T Consensus 69 ~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 144 (251)
T PRK14270 69 DGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS- 144 (251)
T ss_pred CCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC-
Confidence 9988632 123567999999988887 899999988654321 1112233456778889988742 22332
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 145 ----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~ 218 (251)
T PRK14270 145 ----ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAF 218 (251)
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEE
Confidence 358999999999999999999999999999999999999999999999876 689999999975 56778999999
Q ss_pred EecCCEEEEEcCCC
Q 000937 843 LKTGGRIIYSGPLG 856 (1218)
Q Consensus 843 l~~~G~~~~~g~~~ 856 (1218)
+. +|+++..|+++
T Consensus 219 l~-~G~i~~~~~~~ 231 (251)
T PRK14270 219 FL-MGDLIEFNKTE 231 (251)
T ss_pred EE-CCeEEEeCCHH
Confidence 97 69999998863
No 217
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-35 Score=321.35 Aligned_cols=202 Identities=23% Similarity=0.312 Sum_probs=172.7
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++ ++++++|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|+
T Consensus 10 ~~l~~~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~ 73 (214)
T PRK13543 10 PLLAAHALAFSRN--------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGK 73 (214)
T ss_pred ceEEEeeEEEecC--------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--CeeEEECCE
Confidence 3578999998763 246999999999999999999999999999999999998774 899999998
Q ss_pred eCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 695 PKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 695 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
++.....++.++|++|++.+++.+|+.||+.+....+. ....+.++++++.+++.+..++.+ ..|||||
T Consensus 74 ~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 142 (214)
T PRK13543 74 TATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG------RRAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQ 142 (214)
T ss_pred EccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC------CcHHHHHHHHHHHcCChhhccCCh-----hhCCHHH
Confidence 86533334568999999888888999999988653321 112345678889999987777664 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
|||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++.
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 99999999999999999999999999999999999999999888999999999986 6788899998875
No 218
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=328.62 Aligned_cols=215 Identities=24% Similarity=0.316 Sum_probs=175.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.++ ++++++|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 3 ~l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 68 (250)
T PRK14240 3 KISVKDLDLFYG--------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLD 68 (250)
T ss_pred eEEEEEEEEEEC--------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 368899998873 236999999999999999999999999999999999975421 148999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 763 (1218)
|++... ...++.++|++|++.+++ +|+.||+.+...... ........+.++++++.+++.+ ..+..
T Consensus 69 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 143 (250)
T PRK14240 69 GQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS-- 143 (250)
T ss_pred CEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC--
Confidence 988642 123567999999988877 899999998654321 1112234456778888888742 22333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.+|++++|
T Consensus 144 ---~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l 218 (250)
T PRK14240 144 ---ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFF 218 (250)
T ss_pred ---CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999854 899999999975 567789999999
Q ss_pred ecCCEEEEEcCC
Q 000937 844 KTGGRIIYSGPL 855 (1218)
Q Consensus 844 ~~~G~~~~~g~~ 855 (1218)
. +|+++..|+.
T Consensus 219 ~-~G~i~~~~~~ 229 (250)
T PRK14240 219 L-NGEIVEFGDT 229 (250)
T ss_pred E-CCEEEEeCCH
Confidence 8 5999998875
No 219
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=329.19 Aligned_cols=216 Identities=24% Similarity=0.300 Sum_probs=175.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~~ 692 (1218)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. +.+|+|.++
T Consensus 5 ~l~~~~l~~~~~--------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~ 70 (252)
T PRK14239 5 ILQVSDLSVYYN--------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYN 70 (252)
T ss_pred eEEEEeeEEEEC--------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEEC
Confidence 478999998873 2469999999999999999999999999999999999743 31 137999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 763 (1218)
|++... ...++.++|++|++.+++ .||+||+.+....+. ........+.++++++.+++.+ ..+..
T Consensus 71 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 145 (252)
T PRK14239 71 GHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS-- 145 (252)
T ss_pred CEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC--
Confidence 987632 123567999999988877 899999988653321 1112223456777888888743 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|
T Consensus 146 ---~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l 220 (252)
T PRK14239 146 ---ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFF 220 (252)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999865 699999999975 567889999999
Q ss_pred ecCCEEEEEcCCC
Q 000937 844 KTGGRIIYSGPLG 856 (1218)
Q Consensus 844 ~~~G~~~~~g~~~ 856 (1218)
. +|++++.|+.+
T Consensus 221 ~-~G~i~~~g~~~ 232 (252)
T PRK14239 221 L-DGDLIEYNDTK 232 (252)
T ss_pred E-CCEEEEeCCHH
Confidence 8 59999998753
No 220
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=328.76 Aligned_cols=219 Identities=22% Similarity=0.266 Sum_probs=175.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 3 ~l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 68 (249)
T PRK14253 3 KFNIENLDLFYG--------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMD 68 (249)
T ss_pred eEEEeccEEEEC--------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEEC
Confidence 467899998773 246999999999999999999999999999999999987642 248999999
Q ss_pred CEeCcc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCC
Q 000937 693 GYPKIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768 (1218)
Q Consensus 693 g~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 768 (1218)
|.++.. ...++.++|++|++.+++ .||.||+.+...... ........+++.+.++.+++.+....... ..+.
T Consensus 69 g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 144 (249)
T PRK14253 69 GEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAF 144 (249)
T ss_pred CEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCcc
Confidence 987531 234567999999988887 899999987643221 11122334556777888887532111111 1135
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
+|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|+
T Consensus 145 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~-~G~ 221 (249)
T PRK14253 145 GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFL-MGE 221 (249)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999976 689999999985 5677899999998 599
Q ss_pred EEEEcCC
Q 000937 849 IIYSGPL 855 (1218)
Q Consensus 849 ~~~~g~~ 855 (1218)
++..|+.
T Consensus 222 i~~~g~~ 228 (249)
T PRK14253 222 LVEHDDT 228 (249)
T ss_pred EEEeCCH
Confidence 9998875
No 221
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-36 Score=340.92 Aligned_cols=212 Identities=25% Similarity=0.402 Sum_probs=177.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
-.++|+|+++.+. +++++|+++||+|++||-+||+|+|||||||++|+|.+..+. +|+|++||+
T Consensus 350 ~~I~F~dV~f~y~-------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~---sG~I~IdG~ 413 (591)
T KOG0057|consen 350 GSIEFDDVHFSYG-------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY---SGSILIDGQ 413 (591)
T ss_pred CcEEEEeeEEEeC-------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhcc---CCcEEECCe
Confidence 3589999999985 235699999999999999999999999999999999998773 899999999
Q ss_pred eCc---cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCC-------CccccccccC
Q 000937 695 PKI---QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-------DGIKESLVGI 764 (1218)
Q Consensus 695 ~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~ 764 (1218)
++. .+..|+.+|||||+..+|. -||.+|+.|+. +..+. +.+.++.+..++ ++-..|.+|.
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASD----EEVVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCH----HHHHHHHHHcCcHHHHHhccccchhhHhh
Confidence 864 3567889999999887765 69999999863 22222 234444444444 4456777887
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..|||||||||+||||++.||+|+++|||||.||.++..++++.+.+ ...|+|+|++.|+. +....||++++++
T Consensus 484 rG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l--~ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRL--DLLKDFDKIIVLD 559 (591)
T ss_pred cc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecc--hhHhcCCEEEEEE
Confidence 76 46999999999999999999999999999999999999999999998 34689999999986 5689999999998
Q ss_pred cCCEEEEEcCCCC
Q 000937 845 TGGRIIYSGPLGN 857 (1218)
Q Consensus 845 ~~G~~~~~g~~~~ 857 (1218)
+|++...|+.++
T Consensus 560 -nG~v~e~gth~e 571 (591)
T KOG0057|consen 560 -NGTVKEYGTHSE 571 (591)
T ss_pred -CCeeEEeccHHH
Confidence 599999998643
No 222
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-36 Score=364.81 Aligned_cols=219 Identities=25% Similarity=0.332 Sum_probs=183.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+|+|+|..+| .+|+|.++|++
T Consensus 5 ~l~~~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~ 68 (510)
T PRK09700 5 YISMAGIGKSFG--------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNIN 68 (510)
T ss_pred eEEEeeeEEEcC--------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEE
Confidence 478999998873 24699999999999999999999999999999999999876 48999999987
Q ss_pred Cccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhcc-CCC---CChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 696 KIQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRL-APQ---INSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 696 ~~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
.... ..++.++|++|++.+++.+||+||+.++..... ... ....+..++++++++.+|+.+..++.+
T Consensus 69 i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 143 (510)
T PRK09700 69 YNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV----- 143 (510)
T ss_pred CCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----
Confidence 6421 123569999999989999999999987532110 001 112234466888999999987777765
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|++++|. +|
T Consensus 144 ~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~-~G 221 (510)
T PRK09700 144 ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMK-DG 221 (510)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 479999999999999999999999999999999999999999999999888999999999975 5667899999998 59
Q ss_pred EEEEEcCCCC
Q 000937 848 RIIYSGPLGN 857 (1218)
Q Consensus 848 ~~~~~g~~~~ 857 (1218)
++++.|++++
T Consensus 222 ~i~~~g~~~~ 231 (510)
T PRK09700 222 SSVCSGMVSD 231 (510)
T ss_pred EEeeecchhh
Confidence 9999998765
No 223
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.9e-35 Score=322.10 Aligned_cols=211 Identities=25% Similarity=0.397 Sum_probs=176.1
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.+... .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 l~~~~l~~~~~~~----------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~ 69 (220)
T TIGR02982 2 ISIRNLNHYYGHG----------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQEL 69 (220)
T ss_pred EEEEEEEEEccCC----------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEh
Confidence 5788999877310 1125799999999999999999999999999999999998876 489999999875
Q ss_pred ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
... ..++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.+++.+..+..+ ++|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~l 142 (220)
T TIGR02982 70 YGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNL 142 (220)
T ss_pred HhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhC
Confidence 321 235679999999999999999999998654321 1223344567889999999987766654 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|+|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ +.+.+|++++|. +|++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~-~g~~ 219 (220)
T TIGR02982 143 SGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHME-DGKL 219 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEE-CCEE
Confidence 99999999999999999999999999999999999999999999976 4899999999974 568899999997 5775
No 224
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.8e-35 Score=330.23 Aligned_cols=216 Identities=24% Similarity=0.298 Sum_probs=176.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~--------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 69 (258)
T PRK11701 6 LLSVRGLTKLYG--------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRD 69 (258)
T ss_pred eEEEeeeEEEcC--------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCcc
Confidence 478999998873 24699999999999999999999999999999999998876 48999999987
Q ss_pred -----Cccc---c----ccceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccc
Q 000937 696 -----KIQE---T----FVRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKES 760 (1218)
Q Consensus 696 -----~~~~---~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~ 760 (1218)
+... . .++.++|++|+.. +.+.+|+.||+.+...... .....+..+.+.++++.+++.+ ..++
T Consensus 70 ~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 147 (258)
T PRK11701 70 GQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDD 147 (258)
T ss_pred ccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhC
Confidence 4321 1 2346999999973 5678899999976432111 1112233456788899999863 4454
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhce
Q 000937 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDE 839 (1218)
Q Consensus 761 ~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~ 839 (1218)
. +..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|+
T Consensus 148 ~-----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~ 221 (258)
T PRK11701 148 L-----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHR 221 (258)
T ss_pred C-----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCE
Confidence 4 3589999999999999999999999999999999999999999999998765 899999999975 45568999
Q ss_pred EEEEecCCEEEEEcCCC
Q 000937 840 LILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 840 ~~~l~~~G~~~~~g~~~ 856 (1218)
+++|. +|++++.|+++
T Consensus 222 i~~l~-~g~i~~~~~~~ 237 (258)
T PRK11701 222 LLVMK-QGRVVESGLTD 237 (258)
T ss_pred EEEEE-CCEEEEeCCHH
Confidence 99997 59999998763
No 225
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=329.83 Aligned_cols=217 Identities=22% Similarity=0.290 Sum_probs=177.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-c--eeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-C--FKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~--~~G~i~~~ 692 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|+.++. + .+|+|.++
T Consensus 7 ~l~~~~l~~~~~--------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~ 72 (259)
T PRK14260 7 AIKVKDLSFYYN--------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFF 72 (259)
T ss_pred eEEEEEEEEEEC--------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEEC
Confidence 478999998873 246999999999999999999999999999999999987642 1 47999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 763 (1218)
|+++.. ...++.++|++|++.+++ .|++||+.+....+. ........+.++++++.+++.+ ..+..
T Consensus 73 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 147 (259)
T PRK14260 73 GQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS-- 147 (259)
T ss_pred CEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC--
Confidence 987532 123457999999988887 899999987654321 1122233456778888888742 23332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|
T Consensus 148 ---~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l 222 (259)
T PRK14260 148 ---ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFF 222 (259)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEE
Confidence 458999999999999999999999999999999999999999999999865 699999999986 677889999999
Q ss_pred ec----CCEEEEEcCCC
Q 000937 844 KT----GGRIIYSGPLG 856 (1218)
Q Consensus 844 ~~----~G~~~~~g~~~ 856 (1218)
.+ +|++++.|++.
T Consensus 223 ~~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 223 STDESRIGQMVEFGVTT 239 (259)
T ss_pred eccCCCCceEEEeCCHH
Confidence 73 49999999863
No 226
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.2e-35 Score=324.40 Aligned_cols=210 Identities=22% Similarity=0.335 Sum_probs=172.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. ++++++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 7 ~i~~~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~ 70 (225)
T PRK10247 7 LLQLQNVGYLAG--------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGED 70 (225)
T ss_pred eEEEeccEEeeC--------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEE
Confidence 578999998873 24699999999999999999999999999999999998776 48999999987
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LS 771 (1218)
... ...++.++|++|++.+++ .|++||+.+....+. . ....++++++++.+++. ...++.+ ..||
T Consensus 71 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~---~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 139 (225)
T PRK10247 71 ISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRN--Q---QPDPAIFLDDLERFALPDTILTKNI-----AELS 139 (225)
T ss_pred cCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcC--C---ChHHHHHHHHHHHcCCChHHhcCCc-----ccCC
Confidence 532 223567899999988876 599999987543321 1 11234567899999995 3455543 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++ +.+|++++|.+++..+
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~ 217 (225)
T PRK10247 140 GGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEM 217 (225)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchH
Confidence 99999999999999999999999999999999999999999998764 899999999985 34 5799999996445555
Q ss_pred EEcC
Q 000937 851 YSGP 854 (1218)
Q Consensus 851 ~~g~ 854 (1218)
.+|.
T Consensus 218 ~~~~ 221 (225)
T PRK10247 218 QEAR 221 (225)
T ss_pred hhhh
Confidence 5554
No 227
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-35 Score=327.71 Aligned_cols=220 Identities=23% Similarity=0.307 Sum_probs=176.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.++
T Consensus 3 ~l~~~~l~~~~~--------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~ 68 (250)
T PRK14262 3 IIEIENFSAYYG--------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFK 68 (250)
T ss_pred eEEEEeeEEEeC--------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEEC
Confidence 378999998873 246899999999999999999999999999999999986531 248999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
|.+... ...++.++|++|++.+++ .|++||+.+...... .......++.+++.++.+++.+..+... +..+
T Consensus 69 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 144 (250)
T PRK14262 69 GQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPG 144 (250)
T ss_pred CEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCCh
Confidence 987532 123567999999988887 899999988653321 1112233455678888888853211111 1124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++. +|
T Consensus 145 ~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~-~G 221 (250)
T PRK14262 145 TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMY-RG 221 (250)
T ss_pred hhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 58999999999999999999999999999999999999999999999865 799999999975 5678899999998 59
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
+++..|+++
T Consensus 222 ~i~~~g~~~ 230 (250)
T PRK14262 222 ELIEYGPTR 230 (250)
T ss_pred EEEEecCHH
Confidence 999998753
No 228
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=331.16 Aligned_cols=217 Identities=23% Similarity=0.302 Sum_probs=177.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~ 691 (1218)
..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.+
T Consensus 24 ~~l~~~nl~~~~~--------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i 89 (272)
T PRK14236 24 TALEVRNLNLFYG--------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL 89 (272)
T ss_pred cEEEEEEEEEEEC--------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE
Confidence 3588999999873 236999999999999999999999999999999999986531 25899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----cccccc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLV 762 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~ 762 (1218)
+|.+... ...++.++|++|++.+++. |++||+.+...... .......++.++++++.+++.+ ..+..
T Consensus 90 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 165 (272)
T PRK14236 90 DGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHEN- 165 (272)
T ss_pred CCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCC-
Confidence 9988642 1245679999999888875 99999987653321 1112223455778888888853 22322
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 166 ----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~ 239 (272)
T PRK14236 166 ----AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAF 239 (272)
T ss_pred ----cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEE
Confidence 358999999999999999999999999999999999999999999999976 799999999975 56778999999
Q ss_pred EecCCEEEEEcCCC
Q 000937 843 LKTGGRIIYSGPLG 856 (1218)
Q Consensus 843 l~~~G~~~~~g~~~ 856 (1218)
|. +|+++..|+.+
T Consensus 240 l~-~G~i~~~g~~~ 252 (272)
T PRK14236 240 MY-MGKLVEYGDTD 252 (272)
T ss_pred EE-CCEEEecCCHH
Confidence 98 59999998753
No 229
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.5e-35 Score=328.06 Aligned_cols=213 Identities=20% Similarity=0.279 Sum_probs=174.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG--CFKGEIKVNG 693 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~--~~~G~i~~~g 693 (1218)
.++++|+++.++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~---------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 4 QIELRNIALQAA---------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred EEEEeCeEEEec---------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 578999998761 25899999999999999999999999999999999987751 1489999999
Q ss_pred EeCccccc-cceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc---cccccccCCCC
Q 000937 694 YPKIQETF-VRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG---IKESLVGIPGV 767 (1218)
Q Consensus 694 ~~~~~~~~-~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~ 767 (1218)
+++..... ++.++|++|++. +.+..|+.+++.+.+.... .. ...+.+.++++.+++.+ ..++. +
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KP--ADDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CC--hHHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 88643222 356999999974 4567899999876543211 11 12356788999999976 23443 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
.+|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~-~ 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMS-H 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEE-C
Confidence 589999999999999999999999999999999999999999999999765 899999999975 5667899999997 6
Q ss_pred CEEEEEcCC
Q 000937 847 GRIIYSGPL 855 (1218)
Q Consensus 847 G~~~~~g~~ 855 (1218)
|+++..|++
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 999998875
No 230
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=332.71 Aligned_cols=220 Identities=23% Similarity=0.404 Sum_probs=176.1
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.
T Consensus 5 ~~l~~~~l~~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~ 69 (272)
T PRK15056 5 AGIVVNDVTVTWR-------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQ 69 (272)
T ss_pred ceEEEEeEEEEec-------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCE
Confidence 3588999998873 124699999999999999999999999999999999999876 4899999998
Q ss_pred eCccccccceEEEeccCCCCC--CCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 695 PKIQETFVRVSGYCEQTDIHS--PHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 695 ~~~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+......++.++|++|++.+. ...+++|++.++...... .........+.++++++.+++.+..++.+ ..||
T Consensus 70 ~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS 144 (272)
T PRK15056 70 PTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELS 144 (272)
T ss_pred EhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCC
Confidence 864322234699999987542 235788988653210000 00111223456778899999987777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ +|++++
T Consensus 145 gG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~--~G~i~~ 221 (272)
T PRK15056 145 GGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV--KGTVLA 221 (272)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE--CCEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 567788988655 489999
Q ss_pred EcCCCC
Q 000937 852 SGPLGN 857 (1218)
Q Consensus 852 ~g~~~~ 857 (1218)
.|++++
T Consensus 222 ~g~~~~ 227 (272)
T PRK15056 222 SGPTET 227 (272)
T ss_pred ecCHHh
Confidence 998754
No 231
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-35 Score=327.60 Aligned_cols=221 Identities=22% Similarity=0.298 Sum_probs=175.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~ 691 (1218)
+.-+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +. +.+|+|.+
T Consensus 4 ~~~~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 69 (251)
T PRK14244 4 IHASVKNLNLWYG--------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDI 69 (251)
T ss_pred eEEEeeeEEEEEC--------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEE
Confidence 3446788888773 2469999999999999999999999999999999999865 21 25899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCC
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPG 766 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 766 (1218)
+|+++.. ...++.++|++|++.+++. |+.||+.+....+. .........+.++++++.+++.+........ .
T Consensus 70 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~ 146 (251)
T PRK14244 70 DGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-S 146 (251)
T ss_pred CCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-C
Confidence 9987532 1235679999999888875 99999988643321 1111223345577889999986522111111 1
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++.+.+|++++|. +
T Consensus 147 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~-~ 223 (251)
T PRK14244 147 AFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQ-S 223 (251)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEE-C
Confidence 35899999999999999999999999999999999999999999999985 4899999999975 5667899999998 5
Q ss_pred CEEEEEcCC
Q 000937 847 GRIIYSGPL 855 (1218)
Q Consensus 847 G~~~~~g~~ 855 (1218)
|+++..|++
T Consensus 224 G~i~~~~~~ 232 (251)
T PRK14244 224 GRIVEYNTT 232 (251)
T ss_pred CEEEEeCCH
Confidence 899998875
No 232
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-37 Score=303.26 Aligned_cols=204 Identities=24% Similarity=0.431 Sum_probs=180.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---ccccceEEEeccCCCCCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHI 718 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~l 718 (1218)
.+.+|+|+|..|++|.+++++|||||||||||.+++.+.+.+ +|+|.++|.++.. ....+.++..-|+......+
T Consensus 13 ~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d--~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rl 90 (252)
T COG4604 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD--SGEITIDGLELTSTPSKELAKKLSILKQENHINSRL 90 (252)
T ss_pred CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc--CceEEEeeeecccCChHHHHHHHHHHHhhchhhhee
Confidence 468999999999999999999999999999999999988764 8999999998643 34556678888999888999
Q ss_pred CHHHHHHHHHhhccCCC--CChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000937 719 TIEESLFFSAWLRLAPQ--INSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEP 796 (1218)
Q Consensus 719 Tv~e~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEP 796 (1218)
||+|-+.|+. .|-+ ....+.+..+++.++.++|.++.|+.. .+||||||||.-||+.|+++.+.++||||
T Consensus 91 TV~dLv~FGR---fPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEP 162 (252)
T COG4604 91 TVRDLVGFGR---FPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEP 162 (252)
T ss_pred EHHHHhhcCC---CcccCCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCc
Confidence 9999999973 3322 234566778999999999999999875 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 797 TTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 797 tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
.++||...+.++++.|++++++ |+||+++.||.+. ...+.|.++.|+ +|+++..|++++
T Consensus 163 LNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK-~G~vv~~G~~~e 222 (252)
T COG4604 163 LNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALK-NGKVVKQGSPDE 222 (252)
T ss_pred ccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeec-CCEEEecCCHHH
Confidence 9999999999999999999987 9999999999874 456789999998 599999999875
No 233
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-35 Score=327.24 Aligned_cols=217 Identities=23% Similarity=0.296 Sum_probs=175.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCc---eeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGC---FKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~---~~G~i~~~ 692 (1218)
.+.++|+++.++ ++.+++|+|+++++||+++|+||||||||||+|+|+|..+|.+ .+|+|.++
T Consensus 4 ~l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 69 (252)
T PRK14272 4 LLSAQDVNIYYG--------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLD 69 (252)
T ss_pred EEEEeeeEEEEC--------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEEC
Confidence 578899998873 2469999999999999999999999999999999999876532 37999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC----cccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD----GIKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~ 763 (1218)
|.+... ...++.++|++|++.+++.+|+.||+.+...... ....++..+.+++.++.+++. +..++.
T Consensus 70 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 145 (252)
T PRK14272 70 GQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP-- 145 (252)
T ss_pred CEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC--
Confidence 987632 1335679999999999999999999987643221 111222345566667777653 223333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|
T Consensus 146 ---~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 220 (252)
T PRK14272 146 ---ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFF 220 (252)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999864 799999999985 566789999999
Q ss_pred ecCCEEEEEcCCC
Q 000937 844 KTGGRIIYSGPLG 856 (1218)
Q Consensus 844 ~~~G~~~~~g~~~ 856 (1218)
. +|++++.|+++
T Consensus 221 ~-~G~i~~~~~~~ 232 (252)
T PRK14272 221 L-VGDLVEHGPTD 232 (252)
T ss_pred E-CCEEEEeCCHH
Confidence 8 58999998753
No 234
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-35 Score=329.15 Aligned_cols=222 Identities=21% Similarity=0.271 Sum_probs=178.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ..+|+|.++
T Consensus 7 ~l~~~nl~~~~~--------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~ 72 (261)
T PRK14258 7 AIKVNNLSFYYD--------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFF 72 (261)
T ss_pred eEEEeeEEEEeC--------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEEC
Confidence 478999999873 236899999999999999999999999999999999987652 137999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
|+++.. ...++.++|++|+..+++ .|+.||+.+...... .....+..+.+.++++.+++.+..+...+ ..+
T Consensus 73 g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 148 (261)
T PRK14258 73 NQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIH-KSA 148 (261)
T ss_pred CEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhc-CCc
Confidence 987531 123567999999988887 899999987643221 01222334567888899988542211111 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.+.+|++++|.++
T Consensus 149 ~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~ 227 (261)
T PRK14258 149 LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGN 227 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccC
Confidence 58999999999999999999999999999999999999999999999875 4899999999985 677889999999732
Q ss_pred ----CEEEEEcCCC
Q 000937 847 ----GRIIYSGPLG 856 (1218)
Q Consensus 847 ----G~~~~~g~~~ 856 (1218)
|++++.|+++
T Consensus 228 ~~~~G~i~~~~~~~ 241 (261)
T PRK14258 228 ENRIGQLVEFGLTK 241 (261)
T ss_pred CCcCceEEEeCCHH
Confidence 8999999863
No 235
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.4e-35 Score=325.08 Aligned_cols=201 Identities=25% Similarity=0.334 Sum_probs=166.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECCEeCccccc-cceEEEeccCCC--CCCCCC
Q 000937 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG--CFKGEIKVNGYPKIQETF-VRVSGYCEQTDI--HSPHIT 719 (1218)
Q Consensus 645 iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~lT 719 (1218)
+++|+|+++++||+++|+||||||||||+|+|+|..+|. +.+|+|.++|+++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999987751 138999999988643222 357999999974 557799
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000937 720 IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG---IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEP 796 (1218)
Q Consensus 720 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEP 796 (1218)
+.|++.+...... .......++++++++.+++.+ ..+.. +..|||||||||+|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543221 112233456888999999973 34444 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 797 TTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 797 tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|. +|+++..|++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMD-DGRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999875 899999999985 5667899999997 5999998875
No 236
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-35 Score=329.43 Aligned_cols=221 Identities=23% Similarity=0.322 Sum_probs=178.7
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~ 691 (1218)
..+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +.+|+|.+
T Consensus 20 ~~l~i~nl~~~~~--------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~ 85 (276)
T PRK14271 20 PAMAAVNLTLGFA--------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLL 85 (276)
T ss_pred cEEEEeeEEEEEC--------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEE
Confidence 3579999999884 246999999999999999999999999999999999987642 25899999
Q ss_pred CCEeCcc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 692 NGYPKIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 692 ~g~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
+|.++.. ...++.++|++|++.+++ .|++||+.+..... ......+..+.+.++++.+++.+..+.... ..+
T Consensus 86 ~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~ 161 (276)
T PRK14271 86 GGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSP 161 (276)
T ss_pred CCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCc
Confidence 9987532 134567999999988887 89999998764321 111233334456778888888643221111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|. +|
T Consensus 162 ~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~-~G 238 (276)
T PRK14271 162 FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFF-DG 238 (276)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 58999999999999999999999999999999999999999999999876 589999999975 5677899999998 59
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
+++..|+++
T Consensus 239 ~i~~~g~~~ 247 (276)
T PRK14271 239 RLVEEGPTE 247 (276)
T ss_pred EEEEeCCHH
Confidence 999998853
No 237
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-35 Score=317.89 Aligned_cols=194 Identities=25% Similarity=0.318 Sum_probs=163.6
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+.
T Consensus 2 l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~ 65 (204)
T PRK13538 2 LEARNLACERD--------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPI 65 (204)
T ss_pred eEEEEEEEEEC--------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEc
Confidence 56788888773 24699999999999999999999999999999999998876 489999999875
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
.. ...++.++|++|++.+++.+|+.||+.+...... ....++++++++.+|+.+..++.+ ..|||||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~ 134 (204)
T PRK13538 66 RRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG------PGDDEALWEALAQVGLAGFEDVPV-----RQLSAGQ 134 (204)
T ss_pred ccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC------ccHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHH
Confidence 42 2345678999999988999999999988653321 123356788999999987666654 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDE 839 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 839 (1218)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ....|+.
T Consensus 135 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~ 197 (204)
T PRK13538 135 QRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL--PVASDKV 197 (204)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh--hhccCCc
Confidence 99999999999999999999999999999999999999999877999999999975 3444543
No 238
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-35 Score=329.49 Aligned_cols=215 Identities=20% Similarity=0.281 Sum_probs=174.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--S-GCFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~-~~~~G~i~~~ 692 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ + .+.+|+|.++
T Consensus 21 ~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 86 (268)
T PRK14248 21 ILEVKDLSIYYG--------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYE 86 (268)
T ss_pred eEEEEEEEEEeC--------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEEC
Confidence 478999999873 2469999999999999999999999999999999999743 1 1248999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 763 (1218)
|++... ...++.++|++|++.+++. |+.||+.+...... ........+.+.+.++.+++.+ ..+..
T Consensus 87 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 161 (268)
T PRK14248 87 GLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS-- 161 (268)
T ss_pred CEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC--
Confidence 987632 1235679999999888875 99999987643221 1112223445677888888742 22333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|
T Consensus 162 ---~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l 236 (268)
T PRK14248 162 ---ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFF 236 (268)
T ss_pred ---cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999965 689999999975 567789999999
Q ss_pred ecCCEEEEEcCC
Q 000937 844 KTGGRIIYSGPL 855 (1218)
Q Consensus 844 ~~~G~~~~~g~~ 855 (1218)
. +|++++.|+.
T Consensus 237 ~-~G~i~~~~~~ 247 (268)
T PRK14248 237 L-NGDLVEYDQT 247 (268)
T ss_pred E-CCEEEEeCCH
Confidence 7 5999999875
No 239
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-35 Score=341.25 Aligned_cols=230 Identities=25% Similarity=0.430 Sum_probs=195.8
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
.-++.+|++.+++ ..++|+||||++++||++||+|.||||||||+|+|+|.++|+ +|+|.+||+
T Consensus 7 ~ll~~~~i~K~Fg--------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~--~G~I~~~G~ 70 (500)
T COG1129 7 PLLELRGISKSFG--------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD--SGEILIDGK 70 (500)
T ss_pred ceeeeecceEEcC--------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC--CceEEECCE
Confidence 3578999998884 468999999999999999999999999999999999998874 999999999
Q ss_pred eCcc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000937 695 PKIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769 (1218)
Q Consensus 695 ~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 769 (1218)
+... ......++.|+|+..+.|++||.||+.++...+.+ .-...+...+++.++++.+++....+++++ +
T Consensus 71 ~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~ 145 (500)
T COG1129 71 PVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----D 145 (500)
T ss_pred EccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----h
Confidence 8542 22345689999999999999999999877544321 223445566778899999998644677765 7
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 770 LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
||.||||.|.|||||..+++||+|||||+.|+......+.+.+++++++|.+||++||.++ |+++.||++.+|. +|+.
T Consensus 146 LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlR-DG~~ 223 (500)
T COG1129 146 LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLR-DGRV 223 (500)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEe-CCEE
Confidence 9999999999999999999999999999999999999999999999999999999999996 8999999999998 6999
Q ss_pred EEEcCC-CCC-chhhhhhhh
Q 000937 850 IYSGPL-GNH-SSRVIEYFE 867 (1218)
Q Consensus 850 ~~~g~~-~~~-~~~~~~~f~ 867 (1218)
+..++. ++. .+++++.+-
T Consensus 224 v~~~~~~~~~~~~~lv~~Mv 243 (500)
T COG1129 224 VGTRPTAAETSEDELVRLMV 243 (500)
T ss_pred eeecccccCCCHHHHHHHhh
Confidence 999983 543 344555554
No 240
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-36 Score=294.55 Aligned_cols=205 Identities=23% Similarity=0.363 Sum_probs=171.8
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc-------------cc---cccce
Q 000937 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI-------------QE---TFVRV 704 (1218)
Q Consensus 641 ~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~-------------~~---~~~~~ 704 (1218)
+...+|++||++.+.|+++.|+|.|||||||+|+||.-+.+|. .|.|.+||+.+. .+ ..+..
T Consensus 17 G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~--~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~ 94 (256)
T COG4598 17 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94 (256)
T ss_pred ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC--CceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH
Confidence 3467999999999999999999999999999999999888874 899999997631 01 12345
Q ss_pred EEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000937 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVEL 784 (1218)
Q Consensus 705 ~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L 784 (1218)
.++|+|+..++.++||.||+.-+..--+ ..++.+..++++..++..|+.+..|... ..|||||+||++|||||
T Consensus 95 L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQQR~aIARaL 167 (256)
T COG4598 95 LGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQQRVAIARAL 167 (256)
T ss_pred hhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHHHHHHHHHHH
Confidence 7999999999999999999875432111 2345666778889999999988777543 47999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 785 VANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 785 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.+.. .-+...+++.|. +|.+-.+|+|+
T Consensus 168 ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh-~G~iEE~G~P~ 237 (256)
T COG4598 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLH-QGKIEEEGPPE 237 (256)
T ss_pred hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEee-cceecccCChH
Confidence 99999999999999999999999999999999999999999997642 233456777776 69999999984
No 241
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.9e-35 Score=361.11 Aligned_cols=212 Identities=21% Similarity=0.350 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|. +|+|.++|.+
T Consensus 11 ~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~ 74 (510)
T PRK15439 11 LLCARSISKQYS--------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNP 74 (510)
T ss_pred eEEEEeEEEEeC--------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEE
Confidence 488999999883 246999999999999999999999999999999999998764 8999999987
Q ss_pred Cccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQE---T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+... . .++.++|++|++.+++.+||+||+.+... ...+.+++++++++.+++.+..++.+ .+||
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (510)
T PRK15439 75 CARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP-------KRQASMQKMKQLLAALGCQLDLDSSA-----GSLE 142 (510)
T ss_pred CCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc-------cchHHHHHHHHHHHHcCCCccccCCh-----hhCC
Confidence 5421 1 22458999999999999999999987531 11233456788999999987777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|. +|++++
T Consensus 143 gG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~-~G~i~~ 220 (510)
T PRK15439 143 VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMR-DGTIAL 220 (510)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 5677899999998 599999
Q ss_pred EcCCCC
Q 000937 852 SGPLGN 857 (1218)
Q Consensus 852 ~g~~~~ 857 (1218)
.|++++
T Consensus 221 ~g~~~~ 226 (510)
T PRK15439 221 SGKTAD 226 (510)
T ss_pred ecChHH
Confidence 998754
No 242
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.9e-35 Score=316.95 Aligned_cols=195 Identities=27% Similarity=0.327 Sum_probs=166.1
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|..++. +|+|.++|.+..
T Consensus 2 ~i~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 65 (201)
T cd03231 2 EADELTCERD--------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL--AGRVLLNGGPLD 65 (201)
T ss_pred EEEEEEEEeC--------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEecc
Confidence 5678887763 246899999999999999999999999999999999998764 899999998753
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 698 Q--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 698 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
. ...++.++|++|++.+++.+|++||+.+.... ...++++++++.+++.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 131 (201)
T cd03231 66 FQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRPV-----AQLSAGQQ 131 (201)
T ss_pred cccHHhhhheEEeccccccCCCcCHHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcCch-----hhCCHHHH
Confidence 2 23456799999998888899999999874210 12345788999999987766654 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. +....+++++.+
T Consensus 132 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 132 RRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999999999999999999999998878999999999975 567777887765
No 243
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-35 Score=325.64 Aligned_cols=220 Identities=21% Similarity=0.265 Sum_probs=175.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++. +.+|+|.++
T Consensus 4 ~l~~~~l~~~~~--------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 69 (251)
T PRK14249 4 KIKIRGVNFFYH--------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLD 69 (251)
T ss_pred eEEEEEEEEEEC--------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEEC
Confidence 477899998873 246999999999999999999999999999999999987763 136999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
|.+... ...++.++|++|++.+++. |++||+.+....+.. ...+...+.++++++.+++.+..+.... ..+
T Consensus 70 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~ 145 (251)
T PRK14249 70 NENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLH-KSG 145 (251)
T ss_pred CEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhh-CCc
Confidence 987532 1345679999999988875 999999886543211 1122233456677777777532111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++.+.+|++++|. +|
T Consensus 146 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~-~G 222 (251)
T PRK14249 146 LALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLL-TG 222 (251)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEe-CC
Confidence 5899999999999999999999999999999999999999999999985 5899999999975 5667789999997 68
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
++++.|+++
T Consensus 223 ~i~~~~~~~ 231 (251)
T PRK14249 223 DLVEYGRTG 231 (251)
T ss_pred eEEEeCCHH
Confidence 999998763
No 244
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-35 Score=328.98 Aligned_cols=215 Identities=24% Similarity=0.313 Sum_probs=174.5
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GCFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~---~~~~G~i~~ 691 (1218)
..++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+.+|+|.+
T Consensus 38 ~~l~i~~l~~~~~--------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i 103 (285)
T PRK14254 38 TVIEARDLNVFYG--------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTF 103 (285)
T ss_pred ceEEEEEEEEEEC--------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence 3588999998873 24699999999999999999999999999999999998652 125899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----cccccc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLV 762 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~ 762 (1218)
+|.+... ...++.++|++|+..+++. ||.||+.+....+. ... ...++++++++.+++.+ ..+..
T Consensus 104 ~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~- 177 (285)
T PRK14254 104 RGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS- 177 (285)
T ss_pred CCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC-
Confidence 9987532 2345679999999888775 99999988654321 111 23456788899988853 23333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++
T Consensus 178 ----~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v 251 (285)
T PRK14254 178 ----GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAV 251 (285)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEE
Confidence 358999999999999999999999999999999999999999999999976 489999999975 55677899765
Q ss_pred EecCCEEEEEcCC
Q 000937 843 LKTGGRIIYSGPL 855 (1218)
Q Consensus 843 l~~~G~~~~~g~~ 855 (1218)
+.++|+++..|+.
T Consensus 252 ~l~~G~i~~~g~~ 264 (285)
T PRK14254 252 FLTGGELVEFDDT 264 (285)
T ss_pred EeeCCEEEEeCCH
Confidence 4346999998875
No 245
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-35 Score=326.08 Aligned_cols=215 Identities=26% Similarity=0.283 Sum_probs=175.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 6 ~i~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14261 6 ILSTKNLNLWYG--------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYN 71 (253)
T ss_pred eEEEeeeEEEEC--------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEEC
Confidence 578999998873 246999999999999999999999999999999999975431 137999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc----cccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI----KESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~ 763 (1218)
|+++.. ...++.++|++|++.+++. ||+||+.+....+.. ......++.+.++++.+++.+. .++.
T Consensus 72 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 146 (253)
T PRK14261 72 GENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDS-- 146 (253)
T ss_pred CEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcC--
Confidence 988532 1235679999999888874 999999987543211 1122334567778888887431 2332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|
T Consensus 147 ---~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l 221 (253)
T PRK14261 147 ---ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFM 221 (253)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999876 689999999975 566789999999
Q ss_pred ecCCEEEEEcCC
Q 000937 844 KTGGRIIYSGPL 855 (1218)
Q Consensus 844 ~~~G~~~~~g~~ 855 (1218)
. +|+++..|++
T Consensus 222 ~-~G~i~~~g~~ 232 (253)
T PRK14261 222 Y-LGKLIEFDKT 232 (253)
T ss_pred E-CCEEEEcCCH
Confidence 7 5999998875
No 246
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.1e-35 Score=359.77 Aligned_cols=220 Identities=20% Similarity=0.360 Sum_probs=181.7
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|+.++++.+|+|.++|++.
T Consensus 2 l~i~~l~~~~~--------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~ 67 (500)
T TIGR02633 2 LEMKGIVKTFG--------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPL 67 (500)
T ss_pred EEEEeEEEEeC--------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 57889988873 2469999999999999999999999999999999999876522489999999876
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCC-CCChhhHHHHHHHHHHHcCCCccc-cccccCCCCCCC
Q 000937 697 IQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP-QINSKTKADCVNHVLKTIELDGIK-ESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~L 770 (1218)
... ..++.++|++|++.+++.+||.||+.+........ ....++..++++++++.+++.+.. ++.+ .+|
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 142 (500)
T TIGR02633 68 KASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDY 142 (500)
T ss_pred CCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhC
Confidence 431 12356999999998899999999998864322110 012233345678899999997654 3433 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 143 SgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~-~G~i~ 220 (500)
T TIGR02633 143 GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIR-DGQHV 220 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEe-CCeEe
Confidence 999999999999999999999999999999999999999999999888999999999975 5667899999997 58999
Q ss_pred EEcCCCC
Q 000937 851 YSGPLGN 857 (1218)
Q Consensus 851 ~~g~~~~ 857 (1218)
..|++++
T Consensus 221 ~~~~~~~ 227 (500)
T TIGR02633 221 ATKDMST 227 (500)
T ss_pred eecCccc
Confidence 9998764
No 247
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-36 Score=340.74 Aligned_cols=213 Identities=25% Similarity=0.421 Sum_probs=179.6
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++|+++.+ ..++|+|+|+++++||.+||+|+||||||||+++|+|-.++. +|+|.+||.+
T Consensus 336 ~l~~~~vsF~y~~~------------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~--~G~i~~~g~~ 401 (573)
T COG4987 336 ALELRNVSFTYPGQ------------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ--QGSITLNGVE 401 (573)
T ss_pred eeeeccceeecCCC------------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC--CCeeeECCcC
Confidence 68999999999742 347999999999999999999999999999999999988874 8999999988
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-------KESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 765 (1218)
+.. ...++.+++++|...+|. -|+++||..+. ++ ...+.+.++++..||.+. .|+.+|+.
T Consensus 402 ~~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~----AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~ 471 (573)
T COG4987 402 IASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PD----ASDEELWAALQQVGLEKLLESAPDGLNTWLGEG 471 (573)
T ss_pred hhhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CC----CCHHHHHHHHHHcCHHHHHHhChhhhhchhccC
Confidence 532 335677899999877664 69999998752 11 223446677888888754 34456665
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
| +.||||||||++|||+|++|.++++|||||.|||+.+++++++.|.+-++ |+|+|++||+.. -.+.||++++|+
T Consensus 472 G-~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~- 546 (573)
T COG4987 472 G-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLD- 546 (573)
T ss_pred C-CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEE-
Confidence 4 67999999999999999999999999999999999999999999998654 899999999975 478999999998
Q ss_pred CCEEEEEcCCCC
Q 000937 846 GGRIIYSGPLGN 857 (1218)
Q Consensus 846 ~G~~~~~g~~~~ 857 (1218)
+|++++.|..++
T Consensus 547 ~Gkiie~G~~~~ 558 (573)
T COG4987 547 NGKIIEEGTHAE 558 (573)
T ss_pred CCeeeecCCHHh
Confidence 699999998754
No 248
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-35 Score=334.38 Aligned_cols=222 Identities=22% Similarity=0.267 Sum_probs=178.7
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GCFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~---~~~~G~i~~ 691 (1218)
..++++|+++.+.. +.+.+|+|+|++|++||++||+||||||||||+++|+|..++ .+.+|+|.+
T Consensus 79 ~~i~~~nls~~y~~------------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~i 146 (329)
T PRK14257 79 NVFEIRNFNFWYMN------------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYF 146 (329)
T ss_pred ceEEEEeeEEEecC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence 35899999998842 124699999999999999999999999999999999998642 134899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCC-hhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQIN-SKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
+|.++.. ...++.++|++|++.+++ .|++||+.|+.... ... .+...+.++++++.++|.+..++.++..
T Consensus 147 dG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~ 222 (329)
T PRK14257 147 LGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKA 222 (329)
T ss_pred CCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC
Confidence 9998642 234567999999988775 79999999864321 111 2222344677888888753323333332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
...||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||+++ .+.+.+|++++|.
T Consensus 223 -~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~- 298 (329)
T PRK14257 223 -GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFY- 298 (329)
T ss_pred -cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 458999999999999999999999999999999999999999999999875 699999999975 4566799999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|++.
T Consensus 299 ~G~i~e~g~~~ 309 (329)
T PRK14257 299 QGWIEEAGETK 309 (329)
T ss_pred CCEEEEeCCHH
Confidence 69999999874
No 249
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-35 Score=329.78 Aligned_cols=216 Identities=21% Similarity=0.304 Sum_probs=174.8
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~ 691 (1218)
..+.++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|+.+ +. +.+|+|.+
T Consensus 38 ~~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~ 103 (286)
T PRK14275 38 PHVVAKNFSIYYG--------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMF 103 (286)
T ss_pred eEEEEeeeEEEEC--------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEE
Confidence 3588999999873 2359999999999999999999999999999999999743 20 24899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC----ccccccc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD----GIKESLV 762 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~ 762 (1218)
+|.++.. ...++.++|++|++.+++. ||.||+.+....+.. ......++.+.++++.+++. +..+..
T Consensus 104 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~- 179 (286)
T PRK14275 104 DGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN- 179 (286)
T ss_pred CCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC-
Confidence 9987532 1245679999999888874 999999986533211 11222345567788888874 223333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++
T Consensus 180 ----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~ 253 (286)
T PRK14275 180 ----ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMF 253 (286)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEE
Confidence 358999999999999999999999999999999999999999999999865 689999999985 56678999999
Q ss_pred EecCCEEEEEcCC
Q 000937 843 LKTGGRIIYSGPL 855 (1218)
Q Consensus 843 l~~~G~~~~~g~~ 855 (1218)
|. +|+++..|++
T Consensus 254 L~-~G~i~~~g~~ 265 (286)
T PRK14275 254 FY-EGVLVEHAPT 265 (286)
T ss_pred EE-CCEEEEeCCH
Confidence 98 5999999875
No 250
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=4.9e-35 Score=327.77 Aligned_cols=225 Identities=22% Similarity=0.345 Sum_probs=180.2
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++.... .+...++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 l~~~nl~~~~~~~~~-----~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~ 76 (268)
T PRK10419 4 LNVSGLSHHYAHGGL-----SGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPL 76 (268)
T ss_pred EEEeceEEEecCCcc-----ccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEec
Confidence 678999988742000 0000135799999999999999999999999999999999998776 489999999875
Q ss_pred cc------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000937 697 IQ------ETFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGV 767 (1218)
Q Consensus 697 ~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 767 (1218)
.. ...++.++|++|+. .+.+..|+.|++.+..... ......+..+.++++++.+++. +..+...
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 149 (268)
T PRK10419 77 AKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP----- 149 (268)
T ss_pred cccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----
Confidence 32 12356799999997 3667899999987653211 1122333445688999999996 4555543
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++++|. +
T Consensus 150 ~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~ 227 (268)
T PRK10419 150 PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-N 227 (268)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-C
Confidence 479999999999999999999999999999999999999999999999865 899999999975 5667899999997 6
Q ss_pred CEEEEEcCCCC
Q 000937 847 GRIIYSGPLGN 857 (1218)
Q Consensus 847 G~~~~~g~~~~ 857 (1218)
|++++.|++++
T Consensus 228 G~i~~~g~~~~ 238 (268)
T PRK10419 228 GQIVETQPVGD 238 (268)
T ss_pred CEEeeeCChhh
Confidence 99999998754
No 251
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-35 Score=329.14 Aligned_cols=217 Identities=19% Similarity=0.226 Sum_probs=175.2
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEE
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIK 690 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~ 690 (1218)
+..+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.
T Consensus 18 ~~~l~~~nl~~~~~--------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (274)
T PRK14265 18 HSVFEVEGVKVFYG--------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLL 83 (274)
T ss_pred CceEEEeeEEEEeC--------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEE
Confidence 34689999999873 246999999999999999999999999999999999986431 2489999
Q ss_pred ECCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccc
Q 000937 691 VNGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESL 761 (1218)
Q Consensus 691 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~ 761 (1218)
++|++... ...++.++|++|+..+++. ||.||+.+....+. ... ...+.+++.++.+++.. ..+..
T Consensus 84 ~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (274)
T PRK14265 84 YRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDKLKEK 158 (274)
T ss_pred ECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHHhcCC
Confidence 99987532 2345679999999888764 99999987643221 111 12344566777777642 22332
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEE
Q 000937 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELI 841 (1218)
Q Consensus 762 ~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~ 841 (1218)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|+++
T Consensus 159 -----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~ 231 (274)
T PRK14265 159 -----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTA 231 (274)
T ss_pred -----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEE
Confidence 358999999999999999999999999999999999999999999999965 799999999985 6778899999
Q ss_pred EEe--------cCCEEEEEcCCC
Q 000937 842 LLK--------TGGRIIYSGPLG 856 (1218)
Q Consensus 842 ~l~--------~~G~~~~~g~~~ 856 (1218)
+|. ++|++++.|+++
T Consensus 232 ~l~~~~~~~~~~~G~~~~~g~~~ 254 (274)
T PRK14265 232 FFNTEIDEYGKRRGKLVEFSPTE 254 (274)
T ss_pred EEecccccccccCceEEEeCCHH
Confidence 996 269999999863
No 252
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-35 Score=325.03 Aligned_cols=221 Identities=22% Similarity=0.268 Sum_probs=178.2
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEE
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIK 690 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~ 690 (1218)
++.+..+++++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +.+|+|.
T Consensus 6 ~~~~~~~~~~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~ 71 (261)
T PRK14263 6 PIVMDCKLDKIFYG--------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVH 71 (261)
T ss_pred CceEEEEeEEEEeC--------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEE
Confidence 35577888877662 357999999999999999999999999999999999987641 2489999
Q ss_pred ECCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 691 VNGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 691 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
++|+++.. ...++.++|++|++.++ .+|+.||+.++...+. . .....+.++++++.+++.+..+...+ .
T Consensus 72 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~ 145 (261)
T PRK14263 72 FLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-V 145 (261)
T ss_pred ECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-C
Confidence 99987532 13456799999998877 5999999988754321 1 12234567888999988543222221 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe-
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK- 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~- 844 (1218)
..+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +++|+|+++|+++ ++.+.+|++++|.
T Consensus 146 ~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~ 223 (261)
T PRK14263 146 SGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSV 223 (261)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEec
Confidence 246899999999999999999999999999999999999999999999996 4799999999985 5678899999996
Q ss_pred ------cCCEEEEEcCCC
Q 000937 845 ------TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ------~~G~~~~~g~~~ 856 (1218)
++|+++..|+.+
T Consensus 224 ~~~~~~~~G~i~~~g~~~ 241 (261)
T PRK14263 224 DISQGTRTGYLVEMGPTA 241 (261)
T ss_pred ccccccCCceEEEeCCHH
Confidence 369999999853
No 253
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-35 Score=325.09 Aligned_cols=215 Identities=21% Similarity=0.303 Sum_probs=174.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--C-ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTS--G-CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~--~-~~~G~i~~~ 692 (1218)
.+.++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|..++ . +.+|+|.++
T Consensus 4 ~l~~~~l~~~~~--------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~ 69 (251)
T PRK14251 4 IISAKDVHLSYG--------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFE 69 (251)
T ss_pred eEEEEeeEEEEC--------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEEC
Confidence 478999999873 24699999999999999999999999999999999998752 1 248999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 763 (1218)
|++... ...++.++|++|++.+++ .||+||+.+...... ....+...+.++++++.+++.. ..+..
T Consensus 70 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 144 (251)
T PRK14251 70 GQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN-- 144 (251)
T ss_pred CEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC--
Confidence 987532 123567999999988776 799999987643221 1112223355778888888842 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|
T Consensus 145 ---~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l 219 (251)
T PRK14251 145 ---AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFL 219 (251)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEE
Confidence 358999999999999999999999999999999999999999999999854 799999999975 567789999999
Q ss_pred ecCCEEEEEcCC
Q 000937 844 KTGGRIIYSGPL 855 (1218)
Q Consensus 844 ~~~G~~~~~g~~ 855 (1218)
. +|+++..|+.
T Consensus 220 ~-~G~i~~~~~~ 230 (251)
T PRK14251 220 M-NGDLIEAGPT 230 (251)
T ss_pred E-CCEEEEeCCH
Confidence 7 5999998875
No 254
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1e-35 Score=328.22 Aligned_cols=209 Identities=24% Similarity=0.426 Sum_probs=163.3
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (237)
T cd03252 2 TFEHVRFRYKP------------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLA 67 (237)
T ss_pred EEEEEEEecCC------------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehH
Confidence 57888887631 124699999999999999999999999999999999999876 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHH-----HHHHHHHHc--CCCccccccccCCCC
Q 000937 698 Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKAD-----CVNHVLKTI--ELDGIKESLVGIPGV 767 (1218)
Q Consensus 698 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~~ 767 (1218)
. ...++.++|++|++.+++ .||.||+.+... ........+ ...+.++.+ ++....+.. +
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~ 136 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----G 136 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----C
Confidence 2 234567999999987764 799999976421 111111111 112233333 333323332 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.+|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++ + .+.+|++++|. +|
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~-~~~~d~v~~l~-~G 212 (237)
T cd03252 137 AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-T-VKNADRIIVME-KG 212 (237)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-H-HHhCCEEEEEE-CC
Confidence 58999999999999999999999999999999999999999999999964 899999999985 3 46799999998 59
Q ss_pred EEEEEcCC
Q 000937 848 RIIYSGPL 855 (1218)
Q Consensus 848 ~~~~~g~~ 855 (1218)
++++.|++
T Consensus 213 ~i~~~~~~ 220 (237)
T cd03252 213 RIVEQGSH 220 (237)
T ss_pred EEEEEcCH
Confidence 99999875
No 255
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.1e-34 Score=323.23 Aligned_cols=219 Identities=21% Similarity=0.321 Sum_probs=175.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCceeeEEEECC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGCFKGEIKVNG 693 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~--~~~~~~G~i~~~g 693 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~--~~G~i~~~g 70 (252)
T CHL00131 7 ILEIKNLHASVN--------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI--LEGDILFKG 70 (252)
T ss_pred eEEEEeEEEEeC--------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC--CCceEEECC
Confidence 478999998873 236999999999999999999999999999999999973 33 589999999
Q ss_pred EeCccc---cccc-eEEEeccCCCCCCCCCHHHHHHHHHhhccC----CCCChhhHHHHHHHHHHHcCCC-ccccccccC
Q 000937 694 YPKIQE---TFVR-VSGYCEQTDIHSPHITIEESLFFSAWLRLA----PQINSKTKADCVNHVLKTIELD-GIKESLVGI 764 (1218)
Q Consensus 694 ~~~~~~---~~~~-~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~ 764 (1218)
.+.... ..++ .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.+++. +..++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 149 (252)
T CHL00131 71 ESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN- 149 (252)
T ss_pred EEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc-
Confidence 875431 2222 478999999999999999999875432110 0111112235677888999986 34454432
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh-hceEEEE
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFES-FDELILL 843 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l 843 (1218)
.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|
T Consensus 150 ---~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l 225 (252)
T CHL00131 150 ---EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVM 225 (252)
T ss_pred ---cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEE
Confidence 259999999999999999999999999999999999999999999999877999999999975 34344 7999999
Q ss_pred ecCCEEEEEcCCC
Q 000937 844 KTGGRIIYSGPLG 856 (1218)
Q Consensus 844 ~~~G~~~~~g~~~ 856 (1218)
. +|++++.|+++
T Consensus 226 ~-~G~i~~~~~~~ 237 (252)
T CHL00131 226 Q-NGKIIKTGDAE 237 (252)
T ss_pred e-CCEEEEecChh
Confidence 7 69999999864
No 256
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.1e-35 Score=371.55 Aligned_cols=211 Identities=26% Similarity=0.422 Sum_probs=175.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.+. +++++|+|+|++++|||.+||+||||||||||+++|+|.. | .+|+|.+||.
T Consensus 348 ~~i~~~~vsf~~~-------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~ 411 (588)
T PRK11174 348 VTIEAEDLEILSP-------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGI 411 (588)
T ss_pred ceEEEEeeEEecc-------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCE
Confidence 3589999997653 1246999999999999999999999999999999999988 6 3899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCC-------CccccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-------DGIKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~ 764 (1218)
++.+ ..+++.++||+|++.+++ -|++||+.++. ++.+. +.++++++..++ .+-.|+.+|.
T Consensus 412 ~i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge 481 (588)
T PRK11174 412 ELRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGD 481 (588)
T ss_pred ecccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhccccccccccc
Confidence 8643 456788999999998876 59999998752 12222 234444554443 3345788887
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|+++|++ +..+.+|++++++
T Consensus 482 ~G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl--~~i~~aD~Iivl~ 557 (588)
T PRK11174 482 QA-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQL--EDLAQWDQIWVMQ 557 (588)
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecCh--HHHHhCCEEEEEe
Confidence 64 4699999999999999999999999999999999999999999999885 589999999997 4578899999997
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 558 -~G~i~e~G~~~ 568 (588)
T PRK11174 558 -DGQIVQQGDYA 568 (588)
T ss_pred -CCeEeecCCHH
Confidence 69999999853
No 257
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-35 Score=323.99 Aligned_cols=215 Identities=22% Similarity=0.294 Sum_probs=173.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~~ 692 (1218)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +. +.+|+|.++
T Consensus 5 ~l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 70 (252)
T PRK14255 5 IITSSDVHLFYG--------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLR 70 (252)
T ss_pred eEEEEeEEEEEC--------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEc
Confidence 478999999873 2469999999999999999999999999999999999754 21 148999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 763 (1218)
|.+... ...++.++|++|++.+++ .|+.||+.+....+.. ...+...+.+.+.++.+++.. ..+..
T Consensus 71 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~-- 145 (252)
T PRK14255 71 GQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES-- 145 (252)
T ss_pred CEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC--
Confidence 987531 133567999999988887 7999999886543211 112222345566777777642 22222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|
T Consensus 146 ---~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l 220 (252)
T PRK14255 146 ---ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFF 220 (252)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999976 589999999985 566789999999
Q ss_pred ecCCEEEEEcCC
Q 000937 844 KTGGRIIYSGPL 855 (1218)
Q Consensus 844 ~~~G~~~~~g~~ 855 (1218)
. +|+++..|++
T Consensus 221 ~-~G~i~~~~~~ 231 (252)
T PRK14255 221 L-TGNLIEFADT 231 (252)
T ss_pred E-CCEEEEeCCH
Confidence 7 6999998875
No 258
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-35 Score=326.79 Aligned_cols=215 Identities=21% Similarity=0.236 Sum_probs=172.6
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--S-GCFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~-~~~~G~i~~~ 692 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++
T Consensus 24 ~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 89 (271)
T PRK14238 24 VFDTQNLNLWYG--------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYR 89 (271)
T ss_pred EEEEeeeEEEEC--------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEEC
Confidence 589999999874 2368999999999999999999999999999999999865 1 1258999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC----cccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD----GIKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~ 763 (1218)
|.+... ...++.++|++|++.+++ .||+||+.++..... ........+.+.+.++.+++. +..+..
T Consensus 90 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~-- 164 (271)
T PRK14238 90 DQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN-- 164 (271)
T ss_pred CEEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC--
Confidence 987531 123567999999988877 599999988653221 111122234456667766542 222322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|
T Consensus 165 ---~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l 239 (271)
T PRK14238 165 ---AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFF 239 (271)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999876 799999999975 566789999999
Q ss_pred ecCCEEEEEcCC
Q 000937 844 KTGGRIIYSGPL 855 (1218)
Q Consensus 844 ~~~G~~~~~g~~ 855 (1218)
. +|+++..|+.
T Consensus 240 ~-~G~i~~~g~~ 250 (271)
T PRK14238 240 L-NGYVNEYDDT 250 (271)
T ss_pred E-CCEEEEeCCH
Confidence 7 5999999875
No 259
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.4e-35 Score=312.56 Aligned_cols=179 Identities=23% Similarity=0.341 Sum_probs=150.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc-----ccccceEEEeccCCC-CC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-----ETFVRVSGYCEQTDI-HS 715 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~ 715 (1218)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++... ...++.++|++|++. .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 35699999999999999999999999999999999998876 48999999987531 123467899999873 33
Q ss_pred CCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000937 716 PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDE 795 (1218)
Q Consensus 716 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDE 795 (1218)
...||+||+.+..... .....+..+.++++++.+++.+..++.+ .+||||||||++|||+|+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999998865322 1223334456788999999987777654 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Q 000937 796 PTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPS 830 (1218)
Q Consensus 796 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 830 (1218)
||+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999878999999999874
No 260
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-35 Score=356.87 Aligned_cols=217 Identities=26% Similarity=0.370 Sum_probs=181.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++
T Consensus 4 ~l~~~~l~~~~~--------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~ 67 (501)
T PRK11288 4 YLSFDGIGKTFP--------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQE 67 (501)
T ss_pred eEEEeeeEEEEC--------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEE
Confidence 478999998873 24699999999999999999999999999999999998876 48999999987
Q ss_pred Ccc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+.. ..+++.++|++|++.+++.+||.||+.++............+..++++++++.+++.+..+..+ .+||
T Consensus 68 i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (501)
T PRK11288 68 MRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLS 142 (501)
T ss_pred CCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCC
Confidence 532 1235679999999989999999999988532111011122334456888999999986666554 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|. +|+++.
T Consensus 143 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~-~G~i~~ 220 (501)
T PRK11288 143 IGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFK-DGRYVA 220 (501)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEe
Confidence 99999999999999999999999999999999999999999999878999999999985 5667899999998 589987
Q ss_pred EcCC
Q 000937 852 SGPL 855 (1218)
Q Consensus 852 ~g~~ 855 (1218)
.++.
T Consensus 221 ~~~~ 224 (501)
T PRK11288 221 TFDD 224 (501)
T ss_pred ecCc
Confidence 7654
No 261
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-35 Score=306.42 Aligned_cols=169 Identities=30% Similarity=0.470 Sum_probs=149.7
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (173)
T cd03230 2 EVRNLSKRYG--------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIK 65 (173)
T ss_pred EEEEEEEEEC--------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcc
Confidence 5788888763 13699999999999999999999999999999999998776 4899999998754
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 698 Q--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 698 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
. ...++.++|++|++.+++.+|+.||+. ||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~ 101 (173)
T cd03230 66 KEPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMK 101 (173)
T ss_pred cchHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHH
Confidence 2 234567999999998888899999863 899999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|+++++. +|+
T Consensus 102 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~-~g~ 172 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILN-NGR 172 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEe-CCC
Confidence 9999999999999999999999999999999999999999877999999999975 5666899999997 465
No 262
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.6e-35 Score=314.88 Aligned_cols=196 Identities=26% Similarity=0.326 Sum_probs=164.4
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 3 l~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 66 (207)
T PRK13539 3 LEGEDLACVRG--------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDI 66 (207)
T ss_pred EEEEeEEEEEC--------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeC
Confidence 67899998773 24699999999999999999999999999999999998776 489999999875
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 697 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
.....++.++|++|++.+++.+||+||+.+...... . ..+.++++++.+|+.+..+... +.|||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (207)
T PRK13539 67 DDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHLPF-----GYLSAGQKR 134 (207)
T ss_pred cchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHH
Confidence 322245678999999888889999999987543221 1 1234788999999987666554 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ + ... |+++.+
T Consensus 135 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~-~~~-~~~~~~ 198 (207)
T PRK13539 135 RVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-G-LPG-ARELDL 198 (207)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-h-hcc-CcEEee
Confidence 999999999999999999999999999999999999998878999999999975 3 344 777666
No 263
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-35 Score=357.90 Aligned_cols=207 Identities=24% Similarity=0.363 Sum_probs=174.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc----ccccceEEEeccCCCCCCCC
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ----ETFVRVSGYCEQTDIHSPHI 718 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~l 718 (1218)
+++|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|++... ...++.++|++|+..+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD--SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 46999999999999999999999999999999999988764 8999999987542 12345699999998888999
Q ss_pred CHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000937 719 TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798 (1218)
Q Consensus 719 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPts 798 (1218)
||+||+.++............+..++++++++.+++.+..++.+ .+|||||||||+||++|+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532110100122333456888999999987776664 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCC
Q 000937 799 GLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNH 858 (1218)
Q Consensus 799 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 858 (1218)
|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|. +|+++..|++.+.
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~~~ 221 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILR-DGQWIATQPLAGL 221 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEeecChhhC
Confidence 99999999999999999888999999999975 5667899999998 5999999987653
No 264
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=4.1e-35 Score=319.81 Aligned_cols=209 Identities=24% Similarity=0.422 Sum_probs=168.2
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++. ..+.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 3 l~~~~l~~~~~~------------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 68 (220)
T cd03245 3 IEFRNVSFSYPN------------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDI 68 (220)
T ss_pred EEEEEEEEEcCC------------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEh
Confidence 678898887631 124699999999999999999999999999999999998776 489999999875
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcccccccc------CCCC
Q 000937 697 IQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVG------IPGV 767 (1218)
Q Consensus 697 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~ 767 (1218)
.. ...++.++|++|++.+++ .||.||+.+... .. ..+.++++++.+++.+..+.... ...+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~----~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 69 RQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LA----DDERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred HHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CC----CHHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 32 223457999999988776 699999876321 11 12345567788888765554321 0123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ..+.+|+++++. +|
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~--~~~~~d~v~~l~-~g 214 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS--LLDLVDRIIVMD-SG 214 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH--HHHhCCEEEEEe-CC
Confidence 589999999999999999999999999999999999999999999998764 89999999975 357899999997 58
Q ss_pred EEEEEc
Q 000937 848 RIIYSG 853 (1218)
Q Consensus 848 ~~~~~g 853 (1218)
++++.|
T Consensus 215 ~i~~~~ 220 (220)
T cd03245 215 RIVADG 220 (220)
T ss_pred eEeecC
Confidence 887654
No 265
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=321.78 Aligned_cols=220 Identities=19% Similarity=0.267 Sum_probs=176.3
Q ss_pred eEEEEEeEEEEEecCc----hhhh--hccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeE
Q 000937 615 ITMVFQDLQYSIDTPL----EMRR--RECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGE 688 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~----~~~~--~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~ 688 (1218)
+.+..+|++..++... ..+. ........+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~--~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT--VGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ceE
Confidence 5678888888776421 1110 0011334567999999999999999999999999999999999998764 899
Q ss_pred EEECCEeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCC
Q 000937 689 IKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768 (1218)
Q Consensus 689 i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 768 (1218)
|.++|. +++++|...+.+.+|+.||+.+..... ....++..+.++++++.+++.+..+..+ +
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----K 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----c
Confidence 999985 245666666778899999998764332 1223333455677888888877666553 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|. +|+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GGK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CCE
Confidence 79999999999999999999999999999999999999999999999877999999999975 5667899999997 699
Q ss_pred EEEEcCCC
Q 000937 849 IIYSGPLG 856 (1218)
Q Consensus 849 ~~~~g~~~ 856 (1218)
++..|+.+
T Consensus 221 i~~~g~~~ 228 (264)
T PRK13546 221 LKDYGELD 228 (264)
T ss_pred EEEeCCHH
Confidence 99998764
No 266
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=8.9e-35 Score=324.00 Aligned_cols=215 Identities=24% Similarity=0.303 Sum_probs=173.6
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~ 66 (253)
T TIGR02323 3 LLQVSGLSKSYG--------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRS 66 (253)
T ss_pred eEEEeeeEEEeC--------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEeccc
Confidence 378899998873 23689999999999999999999999999999999999876 48999999976
Q ss_pred -----Ccc---c----cccceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccc
Q 000937 696 -----KIQ---E----TFVRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKES 760 (1218)
Q Consensus 696 -----~~~---~----~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~ 760 (1218)
... . ..++.++|++|++. +.+.+|+.||+.+..... .. .......+.++++++.+++.+ ..++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~ 144 (253)
T TIGR02323 67 GAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDD 144 (253)
T ss_pred ccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhc
Confidence 321 1 11346899999874 456689999987643211 10 011123456788999999963 5555
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhce
Q 000937 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDE 839 (1218)
Q Consensus 761 ~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~ 839 (1218)
. ++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ ++.+.+|+
T Consensus 145 ~-----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~ 218 (253)
T TIGR02323 145 L-----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQR 218 (253)
T ss_pred C-----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 4 3579999999999999999999999999999999999999999999998764 899999999975 56668999
Q ss_pred EEEEecCCEEEEEcCC
Q 000937 840 LILLKTGGRIIYSGPL 855 (1218)
Q Consensus 840 ~~~l~~~G~~~~~g~~ 855 (1218)
+++|. +|+++..|++
T Consensus 219 ~~~l~-~G~i~~~~~~ 233 (253)
T TIGR02323 219 LLVMQ-QGRVVESGLT 233 (253)
T ss_pred EEEEE-CCEEEEECCH
Confidence 99997 5999998875
No 267
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-35 Score=326.02 Aligned_cols=218 Identities=19% Similarity=0.229 Sum_probs=173.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.+.++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.++
T Consensus 10 ~l~i~~v~~~~~--------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 75 (264)
T PRK14243 10 VLRTENLNVYYG--------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFH 75 (264)
T ss_pred EEEEeeeEEEEC--------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEEC
Confidence 478999998873 236999999999999999999999999999999999975421 248999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
|+++.. ...++.++|++|++.+++ .|+.||+.+....+. .. ....+.++++++.+++.+..+.... ..+
T Consensus 76 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~ 149 (264)
T PRK14243 76 GKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSG 149 (264)
T ss_pred CEEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCc
Confidence 987531 233567999999988877 599999988653221 11 1233456667777777421111111 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe---
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK--- 844 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~--- 844 (1218)
.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.
T Consensus 150 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~ 227 (264)
T PRK14243 150 LSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVEL 227 (264)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEeccc
Confidence 57999999999999999999999999999999999999999999999976 589999999985 6788899999997
Q ss_pred -----cCCEEEEEcCC
Q 000937 845 -----TGGRIIYSGPL 855 (1218)
Q Consensus 845 -----~~G~~~~~g~~ 855 (1218)
++|+++..|++
T Consensus 228 ~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 228 TEGGGRYGYLVEFDRT 243 (264)
T ss_pred ccccccCceEEEeCCH
Confidence 25899999875
No 268
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-35 Score=281.22 Aligned_cols=216 Identities=25% Similarity=0.370 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+..+++++.+. ..++|.||+++.+.||.+.++||||||||||++.|.=+..|. +|+..+.|..
T Consensus 2 sirv~~in~~yg--------------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~--sg~l~ia~~~ 65 (242)
T COG4161 2 SIQLNGINCFYG--------------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNH 65 (242)
T ss_pred ceEEcccccccc--------------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC--CCeEEecccc
Confidence 356778887773 457999999999999999999999999999999998766653 8999987754
Q ss_pred C--c----c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCC
Q 000937 696 K--I----Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPG 766 (1218)
Q Consensus 696 ~--~----~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 766 (1218)
. + + ...++.+|.|+|+-.++|++||.||+.-+.. +. ...++++.+.++.++++.+.|.+.+|+..
T Consensus 66 fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p---- 139 (242)
T COG4161 66 FDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADRYP---- 139 (242)
T ss_pred cccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhccccccccCc----
Confidence 2 1 1 2356789999999999999999999975432 21 13456667778899999999999988763
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
-.|||||+|||+|||||+.+|++|++||||++|||+-..++++++++++..|.|-+++||..+. .-..+.+++.|. +
T Consensus 140 -lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme-~ 216 (242)
T COG4161 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYME-N 216 (242)
T ss_pred -eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeee-c
Confidence 3699999999999999999999999999999999999999999999999999999999997642 234567888887 6
Q ss_pred CEEEEEcCCC
Q 000937 847 GRIIYSGPLG 856 (1218)
Q Consensus 847 G~~~~~g~~~ 856 (1218)
|++++.|+.+
T Consensus 217 g~ive~g~a~ 226 (242)
T COG4161 217 GHIVEQGDAS 226 (242)
T ss_pred CeeEeecchh
Confidence 9999999864
No 269
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=8.2e-35 Score=311.62 Aligned_cols=185 Identities=26% Similarity=0.351 Sum_probs=157.7
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (198)
T TIGR01189 2 AARNLACSRG--------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALA 65 (198)
T ss_pred EEEEEEEEEC--------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcc
Confidence 5678887763 24699999999999999999999999999999999998876 4899999998753
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 698 Q--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 698 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
. ..+++.++|++|++.+++.+|+.||+.+....+. . + .+.++++++.+++.+..++.+ .+||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~-~-~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (198)
T TIGR01189 66 EQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG-----G-A-QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQ 133 (198)
T ss_pred cchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC-----C-c-HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHH
Confidence 2 2234678999999888888999999987643321 1 1 235678899999987766654 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPS 830 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 830 (1218)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 134 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 134 RRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 9999999999999999999999999999999999999999878999999999874
No 270
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=7.5e-35 Score=338.43 Aligned_cols=225 Identities=22% Similarity=0.315 Sum_probs=187.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG--CFKGEIKVNG 693 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~--~~~G~i~~~g 693 (1218)
-++++||+..+... .+...+++||||++++||++||+|.|||||||+.++|.|+.+++ ..+|+|.++|
T Consensus 5 lL~V~nL~v~~~~~----------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g 74 (539)
T COG1123 5 LLEVENLTVEFATD----------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDG 74 (539)
T ss_pred eEEEeceEEEEecC----------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECC
Confidence 57899999988643 12357999999999999999999999999999999999987754 2579999999
Q ss_pred EeCcc---c----cccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccC
Q 000937 694 YPKIQ---E----TFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764 (1218)
Q Consensus 694 ~~~~~---~----~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 764 (1218)
.++.. . ...+.++|++|++ .+.|-+|+.+.+.-....+.. ...++..+++.++++..+|.+-... +
T Consensus 75 ~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~ 149 (539)
T COG1123 75 RDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---D 149 (539)
T ss_pred cchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---c
Confidence 86421 1 1336799999996 466889999888766555432 2366677788899999999876554 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEE
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
..+++|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.++ |.++|++|||+. -+.+.+|++++|
T Consensus 150 ~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm 228 (539)
T COG1123 150 RYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVM 228 (539)
T ss_pred cCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEE
Confidence 224699999999999999999999999999999999999999999999999754 999999999986 467889999999
Q ss_pred ecCCEEEEEcCCCC
Q 000937 844 KTGGRIIYSGPLGN 857 (1218)
Q Consensus 844 ~~~G~~~~~g~~~~ 857 (1218)
. +|++++.|+.++
T Consensus 229 ~-~G~iVE~G~~~~ 241 (539)
T COG1123 229 Y-KGEIVETGPTEE 241 (539)
T ss_pred E-CCEEEEecCHHH
Confidence 8 599999999753
No 271
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=322.42 Aligned_cols=215 Identities=24% Similarity=0.306 Sum_probs=174.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeE------E
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGE------I 689 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~------i 689 (1218)
.+.++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +|+ +
T Consensus 10 ~i~~~~~~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~--~G~v~~~G~~ 73 (257)
T PRK14246 10 VFNISRLYLYIN--------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY--DSKIKVDGKV 73 (257)
T ss_pred heeeeeEEEecC--------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--cCceeEcCEE
Confidence 378999998873 346999999999999999999999999999999999987763 544 4
Q ss_pred EECCEeCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----cccccc
Q 000937 690 KVNGYPKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLV 762 (1218)
Q Consensus 690 ~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~ 762 (1218)
.++|.+... ...++.++|++|++.+++.+|++||+.+...... ....++..+.++++++.+++.+ ..+..
T Consensus 74 ~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 150 (257)
T PRK14246 74 LYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP- 150 (257)
T ss_pred EECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC-
Confidence 454554321 2245679999999999999999999988743221 1122334456788899999863 22332
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++++
T Consensus 151 ----~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~ 224 (257)
T PRK14246 151 ----ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAF 224 (257)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEE
Confidence 357999999999999999999999999999999999999999999999865 699999999975 45678999999
Q ss_pred EecCCEEEEEcCCC
Q 000937 843 LKTGGRIIYSGPLG 856 (1218)
Q Consensus 843 l~~~G~~~~~g~~~ 856 (1218)
|. +|+++..|+.+
T Consensus 225 l~-~g~i~~~g~~~ 237 (257)
T PRK14246 225 LY-NGELVEWGSSN 237 (257)
T ss_pred EE-CCEEEEECCHH
Confidence 97 58999998763
No 272
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=8.5e-35 Score=322.20 Aligned_cols=198 Identities=24% Similarity=0.374 Sum_probs=168.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---ccccceEEEeccCCCCCCCCCHH
Q 000937 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHITIE 721 (1218)
Q Consensus 645 iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~ 721 (1218)
+|+|+|+++++||+++|+||||||||||+++|+|+.++ +|+|.++|++... ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 79999999999999999999999999999999998743 7999999987542 22345689999998888889999
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCcEEEEe
Q 000937 722 ESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVA-------NPSIIFMD 794 (1218)
Q Consensus 722 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~-------~p~llllD 794 (1218)
||+.+.... ........++++++++.+++.+..++.+ +.||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 1122233456788999999987666654 4799999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 795 EPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 795 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++..|+.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLK-QGKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999877999999999975 5778899999997 59999998764
No 273
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.6e-35 Score=312.22 Aligned_cols=194 Identities=21% Similarity=0.304 Sum_probs=163.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
+.++|+++.+. ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.
T Consensus 2 l~~~~l~~~~~--------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~ 65 (200)
T PRK13540 2 LDVIELDFDYH--------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSI 65 (200)
T ss_pred EEEEEEEEEeC--------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCcc
Confidence 57889988773 24699999999999999999999999999999999999876 489999999875
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
.. ...++.++|++|+..+++.+||+||+.+.... . . ....++++++.+++.+..+..+ .+|||||
T Consensus 66 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~----~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 132 (200)
T PRK13540 66 KKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--S----P--GAVGITELCRLFSLEHLIDYPC-----GLLSSGQ 132 (200)
T ss_pred ccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--C----c--chHHHHHHHHHcCCchhhhCCh-----hhcCHHH
Confidence 42 23456799999998888899999999876421 1 1 1235788899999876666554 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEE
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELI 841 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~ 841 (1218)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ....+|..+
T Consensus 133 ~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 133 KRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 99999999999999999999999999999999999999998777999999999974 456676544
No 274
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=7.5e-35 Score=317.53 Aligned_cols=191 Identities=25% Similarity=0.379 Sum_probs=158.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHH
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIE 721 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 721 (1218)
.+++|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|++... ..+...+.+.+||+
T Consensus 34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~~~~~tv~ 102 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGFNPELTGR 102 (224)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccCCCCCcHH
Confidence 35799999999999999999999999999999999998876 48999999986421 11123345779999
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000937 722 ESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801 (1218)
Q Consensus 722 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD 801 (1218)
||+.+...... .......+.++++++.+++.+..++.+ .+||||||||++|||+|+.+|++++|||||+|||
T Consensus 103 enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gLD 174 (224)
T cd03220 103 ENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGD 174 (224)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99988654321 122334456788899999987777664 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 802 ARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 802 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|+++..|
T Consensus 175 ~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 224 (224)
T cd03220 175 AAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLE-KGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 99999999999999877899999999975 5667899999997 68988754
No 275
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-36 Score=311.05 Aligned_cols=191 Identities=27% Similarity=0.471 Sum_probs=168.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc-------ccccceEEEeccCCCCCCCCCH
Q 000937 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-------ETFVRVSGYCEQTDIHSPHITI 720 (1218)
Q Consensus 648 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 720 (1218)
++++..+.-.++||.|+||||||||+|+|+|+..|+ +|.|.+||....+ ...+|.+|||+|+-.+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd--eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc--ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 567777665799999999999999999999998885 8999999975321 2346889999999999999999
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000937 721 EESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGL 800 (1218)
Q Consensus 721 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgL 800 (1218)
+.||.|+.... .....+++.+.||+.|+.++.. ..|||||||||+|+|||+++|++|+||||.+.|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P-----~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYP-----GTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCC-----CccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999975321 2345788999999999998874 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 801 DARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 801 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
|-..+.+++..|++++++ ...|+.+||.++ |+..++|++++|. +|++..+|+.+
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le-~GkV~A~g~~e 214 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLE-NGKVKASGPLE 214 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEec-CCeEEecCcHH
Confidence 999999999999999987 889999999885 8999999999998 69999999864
No 276
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.3e-35 Score=372.83 Aligned_cols=209 Identities=27% Similarity=0.382 Sum_probs=176.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++|+++. .++.+|+|+|++++|||.+||+||||||||||+|+|+|+.+|. +|+|.+||++
T Consensus 451 ~I~~~nvsf~Y~~------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~~ 516 (686)
T TIGR03797 451 AIEVDRVTFRYRP------------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQD 516 (686)
T ss_pred eEEEEEEEEEcCC------------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCEE
Confidence 6899999999852 1346999999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 765 (1218)
+.+ ..+++.++||+|++.+++ -|++||+.++. + .+ ++.+.++++..++.+ -.|+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 643 456788999999998876 59999998741 1 11 233556666666543 346777765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ ++|+|+++|++ +..+.+|++++|+
T Consensus 586 G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~--~~i~~~D~Iivl~- 658 (686)
T TIGR03797 586 G-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRL--STIRNADRIYVLD- 658 (686)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecCh--HHHHcCCEEEEEE-
Confidence 4 579999999999999999999999999999999999999999999886 58999999987 4578899999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 659 ~G~iv~~G~~~ 669 (686)
T TIGR03797 659 AGRVVQQGTYD 669 (686)
T ss_pred CCEEEEECCHH
Confidence 59999999864
No 277
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-35 Score=323.65 Aligned_cols=209 Identities=23% Similarity=0.364 Sum_probs=164.7
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. .++.+++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~------------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (234)
T cd03251 2 EFKNVTFRYPG------------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVR 67 (234)
T ss_pred EEEEEEEEeCC------------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhh
Confidence 57888887731 123689999999999999999999999999999999999876 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHH-----HHHHHHHHc--CCCccccccccCCCC
Q 000937 698 Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKAD-----CVNHVLKTI--ELDGIKESLVGIPGV 767 (1218)
Q Consensus 698 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~~ 767 (1218)
. ...++.++|++|++.+++ .||+||+.+.... .......+ .+++.++.+ ++.+..+.. +
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~ 136 (234)
T cd03251 68 DYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----G 136 (234)
T ss_pred hCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----C
Confidence 2 233567999999988776 6999999764321 11111111 123444444 444433333 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++ +.+|++++|. +|
T Consensus 137 ~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~-~G 212 (234)
T cd03251 137 VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TI-ENADRIVVLE-DG 212 (234)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-hhCCEEEEec-CC
Confidence 58999999999999999999999999999999999999999999999864 899999999985 44 5599999997 58
Q ss_pred EEEEEcCC
Q 000937 848 RIIYSGPL 855 (1218)
Q Consensus 848 ~~~~~g~~ 855 (1218)
+++..|++
T Consensus 213 ~i~~~~~~ 220 (234)
T cd03251 213 KIVERGTH 220 (234)
T ss_pred eEeeeCCH
Confidence 99988875
No 278
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=325.28 Aligned_cols=252 Identities=21% Similarity=0.339 Sum_probs=205.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+++++++..++ ...+++|||+++++||+.||+|.||||||||+++|.|.++|+ +|+|.++|++
T Consensus 4 ~l~~~~itK~f~--------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~--~GeI~v~G~~ 67 (501)
T COG3845 4 ALEMRGITKRFP--------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD--SGEIRVDGKE 67 (501)
T ss_pred eEEEeccEEEcC--------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC--cceEEECCEE
Confidence 478899988874 357999999999999999999999999999999999999985 9999999998
Q ss_pred Ccc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
..- ...+..||.|.|+..+.|++||.||+..+..-............++++++.+.+||.--.|.+++ +||
T Consensus 68 v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLs 142 (501)
T COG3845 68 VRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLS 142 (501)
T ss_pred eccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCC
Confidence 532 23455699999999999999999999987543222223455667789999999999877777765 799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
-||||||.|-++|.++|++|+|||||+-|-|....++++.|++++++|+|||++||... |+.+.+|++.+|. .|+++.
T Consensus 143 VG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR-~Gkvvg 220 (501)
T COG3845 143 VGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLR-RGKVVG 220 (501)
T ss_pred cchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEe-CCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999986 8999999999998 589887
Q ss_pred EcC-CCC-CchhhhhhhhcCC-CCCCCCCCCCCCcceeeecc
Q 000937 852 SGP-LGN-HSSRVIEYFEGIP-GVPQIRNNYNPATWMLEVTS 890 (1218)
Q Consensus 852 ~g~-~~~-~~~~~~~~f~~~~-~~~~~~~~~npad~~l~~~~ 890 (1218)
.-+ ..+ ..+++.+.+-+-. ..+.-.....|.+.++++-+
T Consensus 221 t~~~~~~~t~~ela~lMvG~~v~~~~~~~~~~pg~~vL~V~~ 262 (501)
T COG3845 221 TVDPVAETTEEELAELMVGREVVLRVVKPPSTPGEVVLEVED 262 (501)
T ss_pred eecCCCCCCHHHHHHHhcCCccccccccCCCCCCCeEEEEee
Confidence 766 323 2233444433210 11111244567788887754
No 279
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=5.6e-35 Score=364.94 Aligned_cols=214 Identities=21% Similarity=0.336 Sum_probs=178.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|++|.++. +++.+|+|+|+++++||.+||+||||||||||+++|+|+.+|. +|+|.+||.
T Consensus 340 ~~i~~~~vsf~y~~------------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~--~G~I~i~g~ 405 (582)
T PRK11176 340 GDIEFRNVTFTYPG------------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID--EGEILLDGH 405 (582)
T ss_pred CeEEEEEEEEecCC------------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC--CceEEECCE
Confidence 35899999999852 1346999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 764 (1218)
+... ..+++.++|++|++.+++ -|++||+.++. +...+ ++.++++++..++. +-.|+.+|.
T Consensus 406 ~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~ 476 (582)
T PRK11176 406 DLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGE 476 (582)
T ss_pred EhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCC
Confidence 8643 356788999999998886 69999997641 11112 23455556655543 345777876
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||+|+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||++ +..+.+|++++++
T Consensus 477 ~g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~--~~~~~~D~Ii~l~ 552 (582)
T PRK11176 477 NG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRL--STIEKADEILVVE 552 (582)
T ss_pred CC-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEE
Confidence 54 5799999999999999999999999999999999999999999999874 479999999997 4578899999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 553 -~g~i~e~g~~~ 563 (582)
T PRK11176 553 -DGEIVERGTHA 563 (582)
T ss_pred -CCEEEEeCCHH
Confidence 59999999864
No 280
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.7e-34 Score=321.01 Aligned_cols=218 Identities=24% Similarity=0.312 Sum_probs=170.7
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCceeeEEEECCE
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGCFKGEIKVNGY 694 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~--~~~~~~G~i~~~g~ 694 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|.
T Consensus 2 i~~~nl~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--~~G~i~~~g~ 65 (248)
T PRK09580 2 LSIKDLHVSVE--------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV--TGGTVEFKGK 65 (248)
T ss_pred eEEEEEEEEeC--------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC--CceEEEECCC
Confidence 57889988773 246999999999999999999999999999999999984 34 5899999998
Q ss_pred eCccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHh-hccCCC---CChhhHHHHHHHHHHHcCCC-ccccccccCC
Q 000937 695 PKIQE---T-FVRVSGYCEQTDIHSPHITIEESLFFSAW-LRLAPQ---INSKTKADCVNHVLKTIELD-GIKESLVGIP 765 (1218)
Q Consensus 695 ~~~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~~~~---~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 765 (1218)
+.... . .++.++|++|++.+++.+|+.+++.+... ++.... .......+.++++++.+++. +..+..+.
T Consensus 66 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (248)
T PRK09580 66 DLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN-- 143 (248)
T ss_pred ccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC--
Confidence 75321 1 22468999999988888887777654321 110000 11112245677888888885 34444321
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh-hceEEEEe
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFES-FDELILLK 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~ 844 (1218)
++|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|+++++.
T Consensus 144 --~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~ 220 (248)
T PRK09580 144 --VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY 220 (248)
T ss_pred --CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEE
Confidence 369999999999999999999999999999999999999999999999877999999999975 33344 79988887
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|+.+
T Consensus 221 -~g~i~~~g~~~ 231 (248)
T PRK09580 221 -QGRIVKSGDFT 231 (248)
T ss_pred -CCeEEEeCCHH
Confidence 69999999863
No 281
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-34 Score=321.26 Aligned_cols=217 Identities=23% Similarity=0.251 Sum_probs=174.9
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEE
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIK 690 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~ 690 (1218)
+..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.
T Consensus 14 ~~~l~~~~l~~~~~--------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~ 79 (265)
T PRK14252 14 QQKSEVNKLNFYYG--------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEII 79 (265)
T ss_pred CceEEEEEEEEEEC--------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEE
Confidence 34588999999874 246999999999999999999999999999999999987642 1589999
Q ss_pred ECCEeCc---c----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccc
Q 000937 691 VNGYPKI---Q----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKE 759 (1218)
Q Consensus 691 ~~g~~~~---~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~ 759 (1218)
++|.+.. . ...++.++|++|++.+++. |++||+.+...... .......++.++++++.+++.+ ..+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (265)
T PRK14252 80 LHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRLG 156 (265)
T ss_pred EcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence 9997642 1 1235679999999888875 99999987643221 0111222345677778777642 222
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce
Q 000937 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDE 839 (1218)
Q Consensus 760 ~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 839 (1218)
.. +..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+
T Consensus 157 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~ 229 (265)
T PRK14252 157 DL-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDY 229 (265)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCE
Confidence 32 357999999999999999999999999999999999999999999999975 699999999975 56678999
Q ss_pred EEEEecCCEEEEEcCC
Q 000937 840 LILLKTGGRIIYSGPL 855 (1218)
Q Consensus 840 ~~~l~~~G~~~~~g~~ 855 (1218)
+++|. +|+++..|+.
T Consensus 230 i~~l~-~G~i~~~g~~ 244 (265)
T PRK14252 230 TAYMY-MGELIEFGAT 244 (265)
T ss_pred EEEEE-CCEEEEeCCH
Confidence 99997 6999999875
No 282
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-34 Score=319.80 Aligned_cols=220 Identities=23% Similarity=0.320 Sum_probs=175.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~~ 692 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +. +.+|+|.+|
T Consensus 3 ~l~~~~v~~~~~--------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 68 (250)
T PRK14266 3 RIEVENLNTYFD--------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLD 68 (250)
T ss_pred EEEEEeEEEEeC--------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEEC
Confidence 467899998773 2469999999999999999999999999999999999753 21 248999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
|.++.. ...++.++|++|++.+++. |+.||+.+..... .....+..++++.++++.+++.+..+.... ..+
T Consensus 69 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~ 144 (250)
T PRK14266 69 GVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLD-KSA 144 (250)
T ss_pred CEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCc
Confidence 987532 1335679999999888874 9999998764322 111222334567888888887532111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++. ++.+.+|+++++. +|
T Consensus 145 ~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~-~G 221 (250)
T PRK14266 145 LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFL-NG 221 (250)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEE-CC
Confidence 58999999999999999999999999999999999999999999999864 899999999985 6777788888887 59
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
++++.|+++
T Consensus 222 ~i~~~g~~~ 230 (250)
T PRK14266 222 EIIESGLTD 230 (250)
T ss_pred eEEEeCCHH
Confidence 999998863
No 283
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-35 Score=321.13 Aligned_cols=210 Identities=26% Similarity=0.425 Sum_probs=165.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. .+.+++|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~-------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~ 66 (229)
T cd03254 2 EIEFENVNFSYDE-------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGID 66 (229)
T ss_pred eEEEEEEEEecCC-------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEe
Confidence 3678999987731 23589999999999999999999999999999999999876 48999999987
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcccccc-------ccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL-------VGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------~~~~ 765 (1218)
+.. ...++.++|++|++.+++. |++||+.+... ... .+.+++.++.+++.+..+.. .+ .
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~ 135 (229)
T cd03254 67 IRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLG-E 135 (229)
T ss_pred HHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccCHhh-c
Confidence 532 2345679999999887775 99999976421 111 12233334444443222211 11 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
.+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||+++ + .+.+|++++|.
T Consensus 136 ~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~-~~~~d~i~~l~- 211 (229)
T cd03254 136 NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-T-IKNADKILVLD- 211 (229)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-H-HhhCCEEEEEe-
Confidence 246899999999999999999999999999999999999999999999986 5899999999975 3 45699999997
Q ss_pred CCEEEEEcCC
Q 000937 846 GGRIIYSGPL 855 (1218)
Q Consensus 846 ~G~~~~~g~~ 855 (1218)
+|++++.|+.
T Consensus 212 ~g~~~~~~~~ 221 (229)
T cd03254 212 DGKIIEEGTH 221 (229)
T ss_pred CCeEEEeCCH
Confidence 5899988764
No 284
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-34 Score=326.73 Aligned_cols=224 Identities=23% Similarity=0.311 Sum_probs=175.1
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GCFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~---~~~~G~i~~ 691 (1218)
..+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+.+|+|.+
T Consensus 44 ~~l~i~nl~~~~~--------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i 109 (305)
T PRK14264 44 AKLSVEDLDVYYG--------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVEL 109 (305)
T ss_pred ceEEEEEEEEEeC--------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence 3588999998873 24699999999999999999999999999999999998652 125899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCC---------CCC-hhhHHHHHHHHHHHcCCCc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP---------QIN-SKTKADCVNHVLKTIELDG 756 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~---------~~~-~~~~~~~~~~~l~~l~l~~ 756 (1218)
+|.++.. ...++.++|++|+..+++ .||+||+.+........ ... .....+.++++++.+++.+
T Consensus 110 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 188 (305)
T PRK14264 110 DGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD 188 (305)
T ss_pred CCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch
Confidence 9987532 123567999999988777 59999999865322100 011 1223456788888888753
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh
Q 000937 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFES 836 (1218)
Q Consensus 757 ~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~ 836 (1218)
..+.... ..+.+|||||||||+||++|+++|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.
T Consensus 189 ~~~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~ 265 (305)
T PRK14264 189 EVNDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARI 265 (305)
T ss_pred hhhHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHh
Confidence 2211111 12458999999999999999999999999999999999999999999999976 489999999985 56678
Q ss_pred hceEEEEecCCEEEEEcCCC
Q 000937 837 FDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 837 ~d~~~~l~~~G~~~~~g~~~ 856 (1218)
+|+++++.++|+++..|+++
T Consensus 266 ~d~i~~~l~~G~i~~~g~~~ 285 (305)
T PRK14264 266 SDQTAVFLTGGELVEYDDTD 285 (305)
T ss_pred cCEEEEEecCCEEEEeCCHH
Confidence 99975443469999999863
No 285
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.6e-35 Score=305.62 Aligned_cols=171 Identities=27% Similarity=0.449 Sum_probs=150.1
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ ++++++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (178)
T cd03229 2 ELKNVSKRYG--------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLT 65 (178)
T ss_pred EEEEEEEEEC--------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 5788888763 24699999999999999999999999999999999998876 4899999998753
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 698 Q-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 698 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
. ...++.++|++|++.+++.+|++||+.+. |||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~ 103 (178)
T cd03229 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSG 103 (178)
T ss_pred ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCH
Confidence 2 23456799999999888889999987531 899
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|.+ |+
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~ 178 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD-GK 178 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CC
Confidence 9999999999999999999999999999999999999999999887 899999999975 45568999999974 53
No 286
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=5.1e-35 Score=322.96 Aligned_cols=210 Identities=27% Similarity=0.409 Sum_probs=162.0
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 ~i~~l~~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 68 (238)
T cd03249 2 EFKNVSFRYPSR-----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIR 68 (238)
T ss_pred eEEEEEEecCCC-----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehh
Confidence 578888876310 124699999999999999999999999999999999998876 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccc-------cccccCCCC
Q 000937 698 Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK-------ESLVGIPGV 767 (1218)
Q Consensus 698 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~ 767 (1218)
. ...++.++|++|++.+++ .||+||+.+.... ...+ ...+.++..++.+.. ++... ..+
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 137 (238)
T cd03249 69 DLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD-----ATDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERG 137 (238)
T ss_pred hcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC-----CCHH----HHHHHHHHcChHHHHHhhccccceeec-cCC
Confidence 2 223456999999987776 6999999764211 1111 112222222222111 11111 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ +.+|++++|. +|
T Consensus 138 ~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~-~G 213 (238)
T cd03249 138 SQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQ-NG 213 (238)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEE-CC
Confidence 5899999999999999999999999999999999999999999999987 7999999999975 34 5899999998 58
Q ss_pred EEEEEcCC
Q 000937 848 RIIYSGPL 855 (1218)
Q Consensus 848 ~~~~~g~~ 855 (1218)
++++.|+.
T Consensus 214 ~i~~~~~~ 221 (238)
T cd03249 214 QVVEQGTH 221 (238)
T ss_pred EEEEeCCH
Confidence 99998875
No 287
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.3e-35 Score=363.13 Aligned_cols=211 Identities=22% Similarity=0.353 Sum_probs=178.6
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|++|.++. ++++|+|+|+++++||.+||+|+||||||||+|+|+|+.+|. +|+|.+||.
T Consensus 339 ~~i~~~~v~f~y~~-------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~ 403 (592)
T PRK10790 339 GRIDIDNVSFAYRD-------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT--EGEIRLDGR 403 (592)
T ss_pred CeEEEEEEEEEeCC-------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CceEEECCE
Confidence 35899999999851 236999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 764 (1218)
++.+ ..+++.++||+|++.+++. |++||+.++. ..+ ++.++++++..|+.+ -.|+.+|.
T Consensus 404 ~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e 472 (592)
T PRK10790 404 PLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGE 472 (592)
T ss_pred EhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccC
Confidence 8643 4567889999999999875 9999998742 111 234566677766543 34666766
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||||+.+|++|+||||||+||+.+++.+.+.|+++.+ ++|+|+++|++ +....+|++++|+
T Consensus 473 ~g-~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~ 548 (592)
T PRK10790 473 QG-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLH 548 (592)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEE
Confidence 44 57999999999999999999999999999999999999999999999864 69999999997 4577899999997
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 549 -~G~i~~~G~~~ 559 (592)
T PRK10790 549 -RGQAVEQGTHQ 559 (592)
T ss_pred -CCEEEEEcCHH
Confidence 69999999864
No 288
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=5.9e-35 Score=372.23 Aligned_cols=211 Identities=27% Similarity=0.414 Sum_probs=176.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|++|+++. .++++|+|+|++|++||.+||+||||||||||+|+|+|+.+|. +|+|.+||.
T Consensus 476 ~~I~~~~vsf~y~~------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~ 541 (710)
T TIGR03796 476 GYVELRNITFGYSP------------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW--SGEILFDGI 541 (710)
T ss_pred CeEEEEEEEEecCC------------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCE
Confidence 36899999999852 1346999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 764 (1218)
++.+ ..+++.++||+|++.+++ .|++||+.++. ++.+ ++.+.++++..++.+ -.|+.+|.
T Consensus 542 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e 611 (710)
T TIGR03796 542 PREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIP----DADLVRACKDAAIHDVITSRPGGYDAELAE 611 (710)
T ss_pred eHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCC----HHHHHHHHHHhCCHHHHHhCcCcccceecc
Confidence 8643 456788999999998875 69999997631 1122 233455566555543 35677776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||||+++|++|+||||||+||+.++..+.+.|++ .++|+|+++|+++ ....+|++++|+
T Consensus 612 ~G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~ 685 (710)
T TIGR03796 612 GG-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLE 685 (710)
T ss_pred CC-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEe
Confidence 54 57999999999999999999999999999999999999999999986 4899999999974 577899999997
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 686 -~G~i~~~G~~~ 696 (710)
T TIGR03796 686 -RGKVVQRGTHE 696 (710)
T ss_pred -CCEEEEecCHH
Confidence 69999999864
No 289
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.4e-34 Score=322.41 Aligned_cols=212 Identities=17% Similarity=0.309 Sum_probs=172.6
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. +...+|+|+|++|++||+++|+||||||||||+++|+|+.+. +|+|.++|.+
T Consensus 2 ~i~~~nls~~~~~------------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~---~G~I~i~g~~ 66 (275)
T cd03289 2 QMTVKDLTAKYTE------------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT---EGDIQIDGVS 66 (275)
T ss_pred eEEEEEEEEEeCC------------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCC---CcEEEECCEE
Confidence 3789999998842 124689999999999999999999999999999999998762 7999999988
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccC------CC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI------PG 766 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~~ 766 (1218)
+.. ...++.++|++|++.+++ .|++||+.... ... .+.+.+.++.+||.+..+...+. .+
T Consensus 67 i~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~ 135 (275)
T cd03289 67 WNSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDG 135 (275)
T ss_pred hhhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCC
Confidence 642 234567999999998887 49999995321 111 23456777888887655543321 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
...||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++. +++|||+++|+++ ....+|++++|. +
T Consensus 136 g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~-~ 211 (275)
T cd03289 136 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIE-E 211 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEec-C
Confidence 24699999999999999999999999999999999999999999999874 4899999999974 345699999997 6
Q ss_pred CEEEEEcCCCC
Q 000937 847 GRIIYSGPLGN 857 (1218)
Q Consensus 847 G~~~~~g~~~~ 857 (1218)
|++++.|++++
T Consensus 212 G~i~~~g~~~~ 222 (275)
T cd03289 212 NKVRQYDSIQK 222 (275)
T ss_pred CeEeecCCHHH
Confidence 99999998753
No 290
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.1e-35 Score=360.70 Aligned_cols=213 Identities=24% Similarity=0.450 Sum_probs=179.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++. +++.+|+|+|++++|||.+||+||||||||||+++|+|..+|. +|+|.+||.
T Consensus 337 ~~i~~~~v~f~y~~------------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~--~G~I~i~g~ 402 (574)
T PRK11160 337 VSLTLNNVSFTYPD------------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ--QGEILLNGQ 402 (574)
T ss_pred CeEEEEEEEEECCC------------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCE
Confidence 36899999999852 1246999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc------ccccccCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI------KESLVGIP 765 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~------~~~~~~~~ 765 (1218)
++.+ ..+++.++||+|++.+++ .|++||+.++. + + ..++.+.++++..++.+. .|+.+|..
T Consensus 403 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~----~~~~~i~~al~~~~l~~~i~~p~GldT~vge~ 472 (574)
T PRK11160 403 PIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-N----ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEG 472 (574)
T ss_pred EhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-c----cCHHHHHHHHHHcCCHHHHcCccccCchhcCC
Confidence 8543 356778999999998876 59999998742 1 1 123446677777777643 46667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+ ..||||||||++|||+|+++|++|+|||||++||+.++..+.+.|+++. +++|+|+++|+++ ....+|++++|+
T Consensus 473 g-~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~- 547 (574)
T PRK11160 473 G-RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMD- 547 (574)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEe-
Confidence 3 5799999999999999999999999999999999999999999999985 4899999999985 457799999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 548 ~G~i~~~g~~~ 558 (574)
T PRK11160 548 NGQIIEQGTHQ 558 (574)
T ss_pred CCeEEEeCCHH
Confidence 59999999863
No 291
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3e-34 Score=313.78 Aligned_cols=209 Identities=22% Similarity=0.274 Sum_probs=166.1
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC--CE
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVN--GY 694 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~--g~ 694 (1218)
++++|+++.++.... .+.++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~-------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~ 72 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ-------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGA 72 (224)
T ss_pred EEEEeeEEEeecccC-------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCC
Confidence 578899988742100 00124799999999999999999999999999999999999876 48999998 42
Q ss_pred --eCcc---cc----ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-ccccccC
Q 000937 695 --PKIQ---ET----FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGI 764 (1218)
Q Consensus 695 --~~~~---~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~ 764 (1218)
+... .. .++.++|++|++.+++.+||+|++.+..... ........+.+.++++.+++.+. .+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 146 (224)
T TIGR02324 73 WVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP--- 146 (224)
T ss_pred ccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC---
Confidence 3211 11 1346899999998999999999998764322 12223334567888999999753 3443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|+++.+
T Consensus 147 --~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~ 222 (224)
T TIGR02324 147 --PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDV 222 (224)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEec
Confidence 3589999999999999999999999999999999999999999999999877999999999863 345678998876
No 292
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.7e-35 Score=363.66 Aligned_cols=215 Identities=28% Similarity=0.453 Sum_probs=178.4
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++|+|++|.++. ++++|+|+|++++|||.+||+||||||||||+++|.|++++ .+|+|.+||.
T Consensus 327 ~~I~f~~vsf~y~~-------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~ 391 (567)
T COG1132 327 GSIEFENVSFSYPG-------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGI 391 (567)
T ss_pred CeEEEEEEEEEcCC-------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCE
Confidence 45899999999852 35799999999999999999999999999999999999887 4899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHH-----HHHHHcCCCccccccccCCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVN-----HVLKTIELDGIKESLVGIPG 766 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~l~~l~l~~~~~~~~~~~~ 766 (1218)
++.. ..+++.++||+|++.+|. -|++||+.++.. +.+.++..+..+ +.++ .+.+..|+.+|..|
T Consensus 392 dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~--~lp~g~dt~vge~G 463 (567)
T COG1132 392 DIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERG 463 (567)
T ss_pred ehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCcccccceecCCC
Confidence 8643 456788999999998887 899999988621 122222222221 2222 33456789998554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
..||||||||++||||++.+|++|+||||||+||+.+...+.+.++++. +|+|+|+++|+++ ....+|++++|+ +
T Consensus 464 -~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~-~ 538 (567)
T COG1132 464 -VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLD-N 538 (567)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEE-C
Confidence 5799999999999999999999999999999999999999999999877 5789999999985 356699999998 5
Q ss_pred CEEEEEcCCCC
Q 000937 847 GRIIYSGPLGN 857 (1218)
Q Consensus 847 G~~~~~g~~~~ 857 (1218)
|++++.|+.++
T Consensus 539 G~i~e~G~h~e 549 (567)
T COG1132 539 GRIVERGTHEE 549 (567)
T ss_pred CEEEEecCHHH
Confidence 99999999743
No 293
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.9e-34 Score=317.50 Aligned_cols=199 Identities=25% Similarity=0.403 Sum_probs=167.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~--------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~~~- 66 (251)
T PRK09544 4 LVSLENVSVSFG--------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNGK- 66 (251)
T ss_pred EEEEeceEEEEC--------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCc-
Confidence 478999998873 24699999999999999999999999999999999999876 4899999872
Q ss_pred CccccccceEEEeccCCCCCCC--CCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPH--ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~--lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
..++|++|++.+++. .|+.+++.+. ... ..+.+.++++.+++.+..+..+ ..||||
T Consensus 67 -------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~----~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 124 (251)
T PRK09544 67 -------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGT----KKEDILPALKRVQAGHLIDAPM-----QKLSGG 124 (251)
T ss_pred -------cCEEEeccccccccccChhHHHHHhcc------ccc----cHHHHHHHHHHcCChHHHhCCh-----hhCCHH
Confidence 358999999877665 4777776431 111 1234678899999987776654 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. + +++..
T Consensus 125 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~ 201 (251)
T PRK09544 125 ETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCS 201 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEee
Confidence 999999999999999999999999999999999999999999776 899999999985 5677899999995 4 68888
Q ss_pred cCCC
Q 000937 853 GPLG 856 (1218)
Q Consensus 853 g~~~ 856 (1218)
|+++
T Consensus 202 g~~~ 205 (251)
T PRK09544 202 GTPE 205 (251)
T ss_pred CCHH
Confidence 8763
No 294
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.2e-34 Score=303.69 Aligned_cols=160 Identities=24% Similarity=0.468 Sum_probs=142.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc----cccceEEEeccCC---CCCCC
Q 000937 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE----TFVRVSGYCEQTD---IHSPH 717 (1218)
Q Consensus 645 iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 717 (1218)
+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|+. .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 79999999999999999999999999999999999876 489999999876431 2356799999984 57888
Q ss_pred CCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000937 718 ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPT 797 (1218)
Q Consensus 718 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPt 797 (1218)
+|++||+.+... ||||||||++||++|+.+|++++|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999876310 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 798 TGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 798 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
+|||+.++..+.+.|++++++|+|+|+++|+++ ++.+.+|++++|. +|+
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~-~G~ 181 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMY-EGR 181 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEec-CCc
Confidence 999999999999999999877999999999975 6777899999997 465
No 295
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.9e-34 Score=352.63 Aligned_cols=214 Identities=22% Similarity=0.283 Sum_probs=176.1
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCceeeEEEECC-
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGCFKGEIKVNG- 693 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~--~~~~~~G~i~~~g- 693 (1218)
++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|.. +| .+|+|.++|
T Consensus 1 l~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p--~~G~i~~~~~ 64 (520)
T TIGR03269 1 IEVKNLTKKFD--------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP--TSGRIIYHVA 64 (520)
T ss_pred CEEEEEEEEEC--------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC--CceEEEEecc
Confidence 35788888773 246999999999999999999999999999999999985 44 489999972
Q ss_pred ----------------------EeCc----------c---ccccceEEEeccC-CCCCCCCCHHHHHHHHHhhccCCCCC
Q 000937 694 ----------------------YPKI----------Q---ETFVRVSGYCEQT-DIHSPHITIEESLFFSAWLRLAPQIN 737 (1218)
Q Consensus 694 ----------------------~~~~----------~---~~~~~~~~~v~q~-~~~~~~lTv~e~l~~~~~~~~~~~~~ 737 (1218)
.++. . ...++.++|++|+ +.+++.+||+||+.+...... ..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~ 141 (520)
T TIGR03269 65 LCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YE 141 (520)
T ss_pred ccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CC
Confidence 2110 0 1134568999997 678888999999988654321 22
Q ss_pred hhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000937 738 SKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD 817 (1218)
Q Consensus 738 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 817 (1218)
..+..++++++++.+|+.+..+..+ .+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 142 ~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 216 (520)
T TIGR03269 142 GKEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVK 216 (520)
T ss_pred HHHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHH
Confidence 3344567889999999987776654 48999999999999999999999999999999999999999999999965
Q ss_pred c-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 818 T-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 818 ~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
+ |+|||++||+++ .+.+.+|++++|. +|++++.|+++
T Consensus 217 ~~g~tviivtHd~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 254 (520)
T TIGR03269 217 ASGISMVLTSHWPE-VIEDLSDKAIWLE-NGEIKEEGTPD 254 (520)
T ss_pred hcCcEEEEEeCCHH-HHHHhcCEEEEEe-CCEEeeecCHH
Confidence 4 999999999985 4667899999997 58999888763
No 296
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-34 Score=357.91 Aligned_cols=220 Identities=19% Similarity=0.258 Sum_probs=180.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+... .+.+++|+||||++++||++||+||||||||||+++|+|+.+|. +|+|.++|..
T Consensus 12 ~l~v~~l~~~y~~~----------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~--~G~i~~~g~~ 79 (623)
T PRK10261 12 VLAVENLNIAFMQE----------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA--GGLVQCDKML 79 (623)
T ss_pred eEEEeceEEEecCC----------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CeEEEECCEE
Confidence 48899999988421 11347999999999999999999999999999999999998764 8999999863
Q ss_pred Cc-------------cc---cc-cceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc
Q 000937 696 KI-------------QE---TF-VRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756 (1218)
Q Consensus 696 ~~-------------~~---~~-~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 756 (1218)
.. .. .. ++.+|||+|++ .+++.+||.||+.++..... .....+..++++++++.+||.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~ 157 (623)
T PRK10261 80 LRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPE 157 (623)
T ss_pred eccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCC
Confidence 21 00 11 24689999987 57888999999998765321 1233444567889999999963
Q ss_pred ---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHH
Q 000937 757 ---IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSID 832 (1218)
Q Consensus 757 ---~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~ 832 (1218)
..+.. +.+|||||||||+||+||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||+++ .
T Consensus 158 ~~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~ 231 (623)
T PRK10261 158 AQTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-V 231 (623)
T ss_pred hhhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-H
Confidence 34444 3589999999999999999999999999999999999999999999999865 999999999975 5
Q ss_pred HHHhhceEEEEecCCEEEEEcCCC
Q 000937 833 IFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 833 ~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
+.+.+|++++|. +|+++..|+++
T Consensus 232 ~~~~adri~vl~-~G~i~~~g~~~ 254 (623)
T PRK10261 232 VAEIADRVLVMY-QGEAVETGSVE 254 (623)
T ss_pred HHHhCCEEEEee-CCeecccCCHH
Confidence 678899999998 59999988764
No 297
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.4e-34 Score=314.05 Aligned_cols=208 Identities=21% Similarity=0.321 Sum_probs=166.1
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 3 l~~~~l~~~~~~------------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 68 (221)
T cd03244 3 IEFKNVSLRYRP------------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL--SSGSILIDGVDI 68 (221)
T ss_pred EEEEEEEEecCC------------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEh
Confidence 678999988742 124699999999999999999999999999999999998776 489999999875
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccc-------cccCCC
Q 000937 697 IQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES-------LVGIPG 766 (1218)
Q Consensus 697 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~ 766 (1218)
.. ...++.++|++|++.+++ .||+||+.+.. ... .+.+.+.++.+++.+..+. ..+ ..
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~ 136 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVVE-EG 136 (221)
T ss_pred HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhcccccccccc-cC
Confidence 32 234567999999988765 69999986421 111 1234555666666543321 111 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++ ..+|++++|. +
T Consensus 137 ~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~-~ 212 (221)
T cd03244 137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TI-IDSDRILVLD-K 212 (221)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-hhCCEEEEEE-C
Confidence 468999999999999999999999999999999999999999999999864 689999999975 34 5699999997 5
Q ss_pred CEEEEEcC
Q 000937 847 GRIIYSGP 854 (1218)
Q Consensus 847 G~~~~~g~ 854 (1218)
|++++.|+
T Consensus 213 g~~~~~~~ 220 (221)
T cd03244 213 GRVVEFDS 220 (221)
T ss_pred CeEEecCC
Confidence 89988775
No 298
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-34 Score=332.97 Aligned_cols=208 Identities=17% Similarity=0.274 Sum_probs=170.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+... ..+.+|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+
T Consensus 21 mL~lknL~~~~~~~-----------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P--~sGeI~I~G~~ 87 (549)
T PRK13545 21 FDKLKDLFFRSKDG-----------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP--NKGTVDIKGSA 87 (549)
T ss_pred eeEEEEEEEecCCC-----------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CceEEEECCEe
Confidence 46788888766321 124699999999999999999999999999999999999876 48999999965
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
. ++.+...+.+.+|++||+.+..... .....+..+.++++++.+++.+..+..+ +.||||||
T Consensus 88 ~----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQr 149 (549)
T PRK13545 88 A----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMK 149 (549)
T ss_pred e----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHH
Confidence 2 1122334567789999998754322 1223334456778899999987777654 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|. +|+++..|++
T Consensus 150 QRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~-~GkIv~~G~~ 227 (549)
T PRK13545 150 SRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLH-YGQVKEYGDI 227 (549)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 9999999999999999999999999999999999999999878999999999975 5667899999997 5999999986
Q ss_pred C
Q 000937 856 G 856 (1218)
Q Consensus 856 ~ 856 (1218)
+
T Consensus 228 ~ 228 (549)
T PRK13545 228 K 228 (549)
T ss_pred H
Confidence 4
No 299
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.6e-34 Score=302.11 Aligned_cols=176 Identities=27% Similarity=0.494 Sum_probs=150.4
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++. .++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 1 i~~~~~~~~~~~------------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~ 66 (178)
T cd03247 1 LSINNVSFSYPE------------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPV 66 (178)
T ss_pred CEEEEEEEEeCC------------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCEEH
Confidence 357888887742 113699999999999999999999999999999999998776 489999999875
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
.. ...++.++|++|++.+++ .|++||+ +..|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~ 103 (178)
T cd03247 67 SDLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGE 103 (178)
T ss_pred HHHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHH
Confidence 32 234567999999987765 6998886 13699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||++|||+|+.+|++++|||||+|||+.++..+++.|++++ +|+|||+++|+++ + .+.+|++++|. +|++++.|
T Consensus 104 ~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~-~~~~d~~~~l~-~g~i~~~~ 178 (178)
T cd03247 104 RQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-G-IEHMDKILFLE-NGKIIMQG 178 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHhCCEEEEEE-CCEEEecC
Confidence 999999999999999999999999999999999999999985 5899999999985 3 46799999997 58988654
No 300
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-36 Score=351.59 Aligned_cols=187 Identities=23% Similarity=0.431 Sum_probs=163.7
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCccc---cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVP---QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~~---~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
|.|++|+||||++...-. ..+|+|++||+|+++.+. |+.+|+|.|||+||.. ||+||+.|... .
T Consensus 499 LVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-~-------- 568 (716)
T KOG0058|consen 499 LVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-N-------- 568 (716)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-C--------
Confidence 679999999999998775 578999999999998874 5778999999999986 99999999643 1
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++||++++|+||+|+|+.+.+.++ ||.||+.+ ..||||||||++||||++++|
T Consensus 569 -------------~t~e~i~~AAk~ANah~FI~~~p~gY-----------~T~VGEkG-~qLSGGQKQRIAIARALlr~P 623 (716)
T KOG0058|consen 569 -------------ATDEEIEAAAKMANAHEFITNFPDGY-----------NTVVGEKG-SQLSGGQKQRIAIARALLRNP 623 (716)
T ss_pred -------------CCHHHHHHHHHHhChHHHHHhCcccc-----------ccccCCcc-ccccchHHHHHHHHHHHhcCC
Confidence 23467999999999999998766554 99999843 359999999999999999999
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
.||+|||+||+||+.++..|.++|.++.+ ++|+++.. ||.++++.+|+|+|+++|++++.|+|+|++.
T Consensus 624 -~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIA--HRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 624 -RVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIA--HRLSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred -CEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEe--hhhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 79999999999999999999999998875 35655553 6788999999999999999999999999995
No 301
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2.3e-34 Score=300.94 Aligned_cols=168 Identities=28% Similarity=0.471 Sum_probs=146.7
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. +++.+++|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~------------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (173)
T cd03246 2 EVENVSFRYPG------------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADIS 67 (173)
T ss_pred EEEEEEEEcCC------------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEcc
Confidence 57888887642 124699999999999999999999999999999999999876 4899999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 698 Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 698 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
. ...++.++|++|++.+++ .||+||+ |||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~ 101 (173)
T cd03246 68 QWDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQ 101 (173)
T ss_pred cCCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHH
Confidence 2 234567999999987777 4999886 89999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ ..+.+|++++|. +|+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~-~G~ 172 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE--TLASADRILVLE-DGR 172 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEEE-CCC
Confidence 99999999999999999999999999999999999999999877999999999974 347899999997 465
No 302
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-34 Score=318.70 Aligned_cols=208 Identities=27% Similarity=0.413 Sum_probs=162.2
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. .+.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~-------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~v~~~g~~~~ 66 (236)
T cd03253 2 EFENVTFAYDP-------------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV--SSGSILIDGQDIR 66 (236)
T ss_pred EEEEEEEEeCC-------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEhh
Confidence 57888877631 24589999999999999999999999999999999998876 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccc-------cccccCCCC
Q 000937 698 Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK-------ESLVGIPGV 767 (1218)
Q Consensus 698 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~ 767 (1218)
. ...++.++|++|+..+++ .|++||+.+... ..... .+.+.++..++.+.. ++.... .+
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~----~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~ 135 (236)
T cd03253 67 EVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDE----EVIEAAKAAQIHDKIMRFPDGYDTIVGE-RG 135 (236)
T ss_pred hCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHH----HHHHHHHHcCcHHHHHhccccccchhhc-CC
Confidence 2 234567999999988775 699999977421 11111 122223333332211 111111 14
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|+++ .+ ..+|++++|. +|
T Consensus 136 ~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~-~g 211 (236)
T cd03253 136 LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLK-DG 211 (236)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEE-CC
Confidence 58999999999999999999999999999999999999999999999977 999999999975 34 5699999998 58
Q ss_pred EEEEEcCC
Q 000937 848 RIIYSGPL 855 (1218)
Q Consensus 848 ~~~~~g~~ 855 (1218)
+++..|+.
T Consensus 212 ~i~~~~~~ 219 (236)
T cd03253 212 RIVERGTH 219 (236)
T ss_pred EEEeeCCH
Confidence 99988764
No 303
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.1e-34 Score=367.61 Aligned_cols=212 Identities=26% Similarity=0.411 Sum_probs=174.5
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++|+|++|+++.. +++++|+|+|++++|||.+||+||||||||||+|+|+|..+|. +|+|.+||+
T Consensus 477 ~~I~~~nVsf~Y~~~-----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~ 543 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR-----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT--GGQVLLDGV 543 (711)
T ss_pred CeEEEEEEEEECCCC-----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCEEEECCE
Confidence 358999999998531 1347999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 764 (1218)
++.+ ...++.++||+|++.+++ .|++||+.++. +..+ ++.+.++++..++.+ -.|+.+|.
T Consensus 544 ~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige 613 (711)
T TIGR00958 544 PLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL-----TDTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGE 613 (711)
T ss_pred EHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC-----CCCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccC
Confidence 8643 346778999999998875 69999998742 1111 234556666666543 35677776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||||+++|+|++||||||+||+.+++.+.+ .. ..+++|+|+++|+++ ..+.+|++++|+
T Consensus 614 ~G-~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~ 687 (711)
T TIGR00958 614 KG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLK 687 (711)
T ss_pred CC-CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEE
Confidence 54 5799999999999999999999999999999999999999988 22 235899999999974 578899999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|+.+
T Consensus 688 -~G~ive~Gt~~ 698 (711)
T TIGR00958 688 -KGSVVEMGTHK 698 (711)
T ss_pred -CCEEEEeeCHH
Confidence 69999999864
No 304
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.3e-34 Score=365.56 Aligned_cols=213 Identities=26% Similarity=0.450 Sum_probs=178.0
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|++|+++. .++++|+|+|++++|||.+||+||||||||||+|+|+|+.+|. +|+|.+||.
T Consensus 462 ~~I~~~~vsf~Y~~------------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~ 527 (694)
T TIGR03375 462 GEIEFRNVSFAYPG------------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT--EGSVLLDGV 527 (694)
T ss_pred ceEEEEEEEEEeCC------------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCE
Confidence 36899999999852 1346999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 764 (1218)
+..+ ..+++.++||+|++.+++ .|++||+.++. ++.+ ++.+.++++..++. +-.|+.+|.
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e 597 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGE 597 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCC----HHHHHHHHHHcChHHHHHhCcccccceecC
Confidence 8643 456788999999998876 59999997641 1122 23344555555443 345777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|+++|+++ ..+.+|++++|+
T Consensus 598 ~G-~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~ 673 (694)
T TIGR03375 598 RG-RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMD 673 (694)
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEe
Confidence 54 5799999999999999999999999999999999999999999999986 4799999999974 578999999997
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|+.+
T Consensus 674 -~G~i~e~G~~~ 684 (694)
T TIGR03375 674 -NGRIVADGPKD 684 (694)
T ss_pred -CCEEEeeCCHH
Confidence 69999999863
No 305
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=288.95 Aligned_cols=229 Identities=25% Similarity=0.342 Sum_probs=192.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.+||++++.. +++||++||++|++||+.+||||||||||||.++|+|......++|+|.++|++
T Consensus 3 ~L~I~dLhv~v~~-------------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~Ged 69 (251)
T COG0396 3 MLEIKDLHVEVEG-------------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGED 69 (251)
T ss_pred eeEEeeeEEEecC-------------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcc
Confidence 4789999998842 258999999999999999999999999999999999987665678999999998
Q ss_pred Ccc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCC
Q 000937 696 KIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGL 770 (1218)
Q Consensus 696 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~L 770 (1218)
+.. +..++.+...+|.|.-+|..|+.+.|..+...+........+..+.+++.++.+++.. ..++.+. .++
T Consensus 70 I~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GF 145 (251)
T COG0396 70 ILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGF 145 (251)
T ss_pred cccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCc
Confidence 643 2345567888999999999999999988765543211112344566888999999986 5666654 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhh--ceEEEEecCCE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESF--DELILLKTGGR 848 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~--d~~~~l~~~G~ 848 (1218)
|||||||..|+..++.+|++.+||||-||||..+-+.|-+.++++++.|.+++++||.. ++.+.. |++.+|. +|+
T Consensus 146 SGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~-~Gr 222 (251)
T COG0396 146 SGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLY-DGR 222 (251)
T ss_pred CcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEE-CCE
Confidence 99999999999999999999999999999999999999999999999999999999974 678887 9999998 599
Q ss_pred EEEEcCCCCCchhhhhhhhcC
Q 000937 849 IIYSGPLGNHSSRVIEYFEGI 869 (1218)
Q Consensus 849 ~~~~g~~~~~~~~~~~~f~~~ 869 (1218)
|+..|.+ ++.++++.-
T Consensus 223 Iv~sG~~-----el~~~le~~ 238 (251)
T COG0396 223 IVKSGDP-----ELAEELEEK 238 (251)
T ss_pred EEecCCH-----HHHHHHHHh
Confidence 9999986 456666654
No 306
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.5e-34 Score=316.62 Aligned_cols=208 Identities=26% Similarity=0.406 Sum_probs=164.8
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.
T Consensus 10 ~~l~~~~l~~~~~~~-----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~ 76 (226)
T cd03248 10 GIVKFQNVTFAYPTR-----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP--QGGQVLLDGK 76 (226)
T ss_pred ceEEEEEEEEEeCCC-----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCC
Confidence 357899999988421 123699999999999999999999999999999999999876 4899999998
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCCh-hh--HHHHHHHHHHHc--CCCccccccccCCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINS-KT--KADCVNHVLKTI--ELDGIKESLVGIPG 766 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~-~~--~~~~~~~~l~~l--~l~~~~~~~~~~~~ 766 (1218)
+... ...++.++|++|++.+++ .||+||+.++.... .... .+ ....+++.++.+ |+.+..+..
T Consensus 77 ~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~----- 147 (226)
T cd03248 77 PISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGYDTEVGEK----- 147 (226)
T ss_pred chHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCC---CHHHHHHHHHHcCcHHHHHhccccccchhhcC-----
Confidence 7532 223467999999987775 69999997743211 0000 01 111245677777 666554444
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++ +.+|++++|. +
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~-~ 223 (226)
T cd03248 148 GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLD-G 223 (226)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEec-C
Confidence 358999999999999999999999999999999999999999999999865 689999999985 44 5699999997 4
Q ss_pred CE
Q 000937 847 GR 848 (1218)
Q Consensus 847 G~ 848 (1218)
|+
T Consensus 224 g~ 225 (226)
T cd03248 224 GR 225 (226)
T ss_pred Cc
Confidence 65
No 307
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=7.2e-34 Score=349.48 Aligned_cols=222 Identities=19% Similarity=0.283 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.++.. .+.+.+|+|+|+++++||++||+||||||||||+++|+|..++. +.+|+|.++
T Consensus 5 ~l~~~~l~~~~~~~----------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 74 (529)
T PRK15134 5 LLAIENLSVAFRQQ----------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFH 74 (529)
T ss_pred eEEEeceEEEecCC----------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEEC
Confidence 47899999988421 01247999999999999999999999999999999999987652 248999999
Q ss_pred CEeCccc------cc-cceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc---ccc
Q 000937 693 GYPKIQE------TF-VRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI---KES 760 (1218)
Q Consensus 693 g~~~~~~------~~-~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~ 760 (1218)
|+++... .. ++.+||++|++. +.+.+|+.|++.+...... .....+..++++++++.+++.+. .++
T Consensus 75 g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 152 (529)
T PRK15134 75 GESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTD 152 (529)
T ss_pred CEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhh
Confidence 9885321 11 246999999864 5677899999876533211 12233455678899999999753 344
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhce
Q 000937 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDE 839 (1218)
Q Consensus 761 ~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~ 839 (1218)
.+ .+|||||||||+|||+|+.+|++|+|||||+|||+.++..+.++|++++++ |+|||++||+++ .+...+|+
T Consensus 153 ~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dr 226 (529)
T PRK15134 153 YP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADR 226 (529)
T ss_pred CC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCE
Confidence 43 589999999999999999999999999999999999999999999999876 899999999985 56678999
Q ss_pred EEEEecCCEEEEEcCCC
Q 000937 840 LILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 840 ~~~l~~~G~~~~~g~~~ 856 (1218)
+++|. +|++++.|+++
T Consensus 227 i~~l~-~G~i~~~g~~~ 242 (529)
T PRK15134 227 VAVMQ-NGRCVEQNRAA 242 (529)
T ss_pred EEEEE-CCEEEEeCCHH
Confidence 99998 59999998764
No 308
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.4e-34 Score=366.26 Aligned_cols=211 Identities=26% Similarity=0.403 Sum_probs=175.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++|.++. ++++|+|+|++|++||.+||+||||||||||+++|+|+.+|. +|+|++||.+
T Consensus 473 ~I~~~~vsf~y~~-------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~--~G~I~idg~~ 537 (708)
T TIGR01193 473 DIVINDVSYSYGY-------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFS 537 (708)
T ss_pred cEEEEEEEEEcCC-------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC--CcEEEECCEE
Confidence 5899999999841 246999999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 765 (1218)
+.+ ..+++.++||+|++.+++ -|++||+.++.. +..+ ++.+.++++..++. .-.|+.+|..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 543 456788999999998876 499999987521 1122 22344555555443 3457777765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ +|+|+|+++|+++ ..+.+|++++|+
T Consensus 609 G-~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~- 682 (708)
T TIGR01193 609 G-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLD- 682 (708)
T ss_pred C-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEE-
Confidence 4 579999999999999999999999999999999999999999999985 4899999999974 578899999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 683 ~G~i~~~G~~~ 693 (708)
T TIGR01193 683 HGKIIEQGSHD 693 (708)
T ss_pred CCEEEEECCHH
Confidence 59999999863
No 309
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.1e-35 Score=281.30 Aligned_cols=193 Identities=22% Similarity=0.370 Sum_probs=166.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---ccccceEEEeccCCCCCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHI 718 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~l 718 (1218)
..++|+++|+++++||..+|.||||||||||+|+++.+.+|+ +|++++.|++.+. +.++..++||.|.+.+|+.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~--~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~- 91 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT--SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD- 91 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC--CceEEEcCccccccChHHHHHHHHHHHcCcccccc-
Confidence 457999999999999999999999999999999999998874 8999999998653 4678889999999999984
Q ss_pred CHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000937 719 TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK-ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPT 797 (1218)
Q Consensus 719 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPt 797 (1218)
||++|+.|...+|... ...+...+.++.+++.+.. ++. +.+||||||||++|+|.|..-|+||+|||||
T Consensus 92 tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k~-----it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 92 TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTKN-----ITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcch-----hhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 9999999987766422 1334567788888887532 322 4589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 798 TGLDARAAAIVMRAVKNVA-DTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 798 sgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|+||+.+++.|-++|.++. ++.+.++.+||+++ +....+|+++-+.. |++
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~-G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQP-GHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEecc-Ccc
Confidence 9999999999999999986 66899999999986 56789999999974 654
No 310
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=4.6e-34 Score=311.30 Aligned_cols=195 Identities=28% Similarity=0.407 Sum_probs=160.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCC--CCCCHHHHHHHHH
Q 000937 651 GTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHS--PHITIEESLFFSA 728 (1218)
Q Consensus 651 ~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~ 728 (1218)
+++++||+++|+||||||||||+++|+|..++. +|+|.+||++.. ..++.++|++|++.++ ..+|+.||+.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA--KGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 468899999999999999999999999988764 899999998753 2346799999998664 3489999998753
Q ss_pred hhccCC-CCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 000937 729 WLRLAP-QINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAI 807 (1218)
Q Consensus 729 ~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~ 807 (1218)
...... ........+.++++++.+++.+..++.+ .+||||||||++||++|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 211000 0111223456788999999987776654 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 808 VMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 808 i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
+.+.|++++++|+|+|++||+++ ++.+.+|+++++ + |++++.|+.++
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~ 198 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQ 198 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHH
Confidence 99999999877999999999975 577889999988 4 89999998754
No 311
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=100.00 E-value=5.9e-33 Score=349.63 Aligned_cols=124 Identities=26% Similarity=0.371 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---cEEE
Q 000937 717 HITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGIPGVSGLSTEQRKRLTIGVELVANP---SIIF 792 (1218)
Q Consensus 717 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p---~lll 792 (1218)
++||.|++.|...+. . .....+.++.+||... .+... .+||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378999988865331 1 1223567889999753 44443 479999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEEcCCC
Q 000937 793 MDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK-----TGGRIIYSGPLG 856 (1218)
Q Consensus 793 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~~~~g~~~ 856 (1218)
|||||+|||+.+...+++.|+++.++|.|||+++|+++ ....+|+++.|. ++|++++.|+++
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999874 457899999993 479999999863
No 312
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-35 Score=321.19 Aligned_cols=220 Identities=24% Similarity=0.367 Sum_probs=183.6
Q ss_pred cCCCceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEE
Q 000937 610 LPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEI 689 (1218)
Q Consensus 610 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i 689 (1218)
+....-.++|+|++|.++ .++++|+||||++.||+.+||+||||+||||+|++|....+. .+|.|
T Consensus 531 l~~~~G~i~fsnvtF~Y~-------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv--~sGsI 595 (790)
T KOG0056|consen 531 LKVTQGKIEFSNVTFAYD-------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV--NSGSI 595 (790)
T ss_pred ccccCCeEEEEEeEEecC-------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc--cCceE
Confidence 344456799999999985 357899999999999999999999999999999999987665 48999
Q ss_pred EECCEeCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHH--HH-HHHHcCCCcccccccc
Q 000937 690 KVNGYPKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCV--NH-VLKTIELDGIKESLVG 763 (1218)
Q Consensus 690 ~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~--~~-~l~~l~l~~~~~~~~~ 763 (1218)
.+||+++.. ...|+.+|.||||..++. -|+..|+.|+. +..+.++..+.+ .. --+.++..+-.++.+|
T Consensus 596 ~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak-----~~AsneevyaAAkAA~IHdrIl~fPegY~t~VG 669 (790)
T KOG0056|consen 596 TIDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAK-----PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVG 669 (790)
T ss_pred EEcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecC-----CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhh
Confidence 999999653 456788999999888875 58889998852 122333332221 11 2346788888999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
..|.+ |||||||||+|||+++.+|.+++|||.||+||..+.+.|...|.++++ ++|.|++.|+++ ..-.+|.++++
T Consensus 670 ERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLS--TivnAD~ILvi 745 (790)
T KOG0056|consen 670 ERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLS--TIVNADLILVI 745 (790)
T ss_pred hcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeeh--heecccEEEEE
Confidence 88764 999999999999999999999999999999999999999999999975 799999999986 35578999999
Q ss_pred ecCCEEEEEcCC
Q 000937 844 KTGGRIIYSGPL 855 (1218)
Q Consensus 844 ~~~G~~~~~g~~ 855 (1218)
. +|+|++.|..
T Consensus 746 ~-~G~IvErG~H 756 (790)
T KOG0056|consen 746 S-NGRIVERGRH 756 (790)
T ss_pred e-CCeEeecCcH
Confidence 8 6999999975
No 313
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=9.5e-34 Score=303.40 Aligned_cols=181 Identities=27% Similarity=0.357 Sum_probs=153.3
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCceeeEEEECCEe
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGCFKGEIKVNGYP 695 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~--~~~~~~G~i~~~g~~ 695 (1218)
+++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|.. +| .+|+|.+||++
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p--~~G~i~~~g~~ 65 (200)
T cd03217 2 EIKDLHVSVG--------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV--TEGEILFKGED 65 (200)
T ss_pred eEEEEEEEeC--------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC--CccEEEECCEE
Confidence 5788888763 246999999999999999999999999999999999984 44 58999999998
Q ss_pred Cccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQE---T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
.... . .++.++|++|++.+++..|+++++ +.. .+.||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l----------------------------------~~~-----~~~LS 106 (200)
T cd03217 66 ITDLPPEERARLGIFLAFQYPPEIPGVKNADFL----------------------------------RYV-----NEGFS 106 (200)
T ss_pred CCcCCHHHHhhCcEEEeecChhhccCccHHHHH----------------------------------hhc-----cccCC
Confidence 6431 1 234599999998888888887765 000 13699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHH-hhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFE-SFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~-~~d~~~~l~~~G~~~ 850 (1218)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+ .+|++++|. +|+++
T Consensus 107 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~-~G~i~ 184 (200)
T cd03217 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLY-DGRIV 184 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 3444 699999997 58999
Q ss_pred EEcCC
Q 000937 851 YSGPL 855 (1218)
Q Consensus 851 ~~g~~ 855 (1218)
..|+.
T Consensus 185 ~~~~~ 189 (200)
T cd03217 185 KSGDK 189 (200)
T ss_pred EEccH
Confidence 98853
No 314
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.6e-34 Score=356.30 Aligned_cols=211 Identities=26% Similarity=0.395 Sum_probs=174.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++|.++. ++.+|+|+|++++|||.++|+||||||||||+|+|+|+.+| .+|+|.+||.+
T Consensus 334 ~I~~~~vsf~y~~-------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~ 398 (588)
T PRK13657 334 AVEFDDVSFSYDN-------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTD 398 (588)
T ss_pred eEEEEEEEEEeCC-------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEE
Confidence 5899999999852 23589999999999999999999999999999999999887 48999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 765 (1218)
... ..+++.++|++|++.+++ -|++||+.++. ++.+. +.+.++++..++. +-.|+.+|..
T Consensus 399 i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~-----~~~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~ 468 (588)
T PRK13657 399 IRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR-----PDATD----EEMRAAAERAQAHDFIERKPDGYDTVVGER 468 (588)
T ss_pred hhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhCcccccchhcCC
Confidence 543 356778999999998875 69999998741 11222 2344455554443 3356666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
...||||||||++|||+|+++|++++||||||+||+.++..+.+.|+++. +++|+|++||++ +..+.+|++++|.
T Consensus 469 -g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~--~~~~~~D~ii~l~- 543 (588)
T PRK13657 469 -GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRL--STVRNADRILVFD- 543 (588)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecH--HHHHhCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999875 479999999997 4578899999997
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 544 ~G~i~~~g~~~ 554 (588)
T PRK13657 544 NGRVVESGSFD 554 (588)
T ss_pred CCEEEEeCCHH
Confidence 59999999853
No 315
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=4.4e-34 Score=300.83 Aligned_cols=175 Identities=30% Similarity=0.496 Sum_probs=145.8
Q ss_pred EEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc
Q 000937 619 FQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ 698 (1218)
Q Consensus 619 ~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 698 (1218)
++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~l~~~~~--------------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~ 65 (180)
T cd03214 2 VENLSVGYG--------------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLAS 65 (180)
T ss_pred eeEEEEEEC--------------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCc
Confidence 567777763 24699999999999999999999999999999999999876 48999999987532
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 699 ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 699 ---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
..+++.++|++| +++.+++.+..++. ++.||||||
T Consensus 66 ~~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~-----~~~LS~G~~ 103 (180)
T cd03214 66 LSPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRP-----FNELSGGER 103 (180)
T ss_pred CCHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCC-----cccCCHHHH
Confidence 122334666666 45566666544444 347999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|+++ ++.+.+|+++++. +|++++.|
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~-~g~i~~~~ 180 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLK-DGRIVAQG 180 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 9999999999999999999999999999999999999999876 899999999985 5668899999998 58887653
No 316
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5e-34 Score=352.44 Aligned_cols=213 Identities=25% Similarity=0.391 Sum_probs=173.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. +++++|+|+|++++|||.++|+||||||||||+++|+|..+|. +|+|.+||.+
T Consensus 316 ~i~~~~v~~~y~~------------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~ 381 (544)
T TIGR01842 316 HLSVENVTIVPPG------------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT--SGSVRLDGAD 381 (544)
T ss_pred eEEEEEEEEEcCC------------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEe
Confidence 5899999998852 1246899999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCC-------CccccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-------DGIKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~ 765 (1218)
... ..+++.++|++|++.+++. |++||+.+.. +..+.+ .+.+.++..++ .+-.|+.+|..
T Consensus 382 i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~ 451 (544)
T TIGR01842 382 LKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPE----KIIEAAKLAGVHELILRLPDGYDTVIGPG 451 (544)
T ss_pred hhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHH----HHHHHHHHhChHHHHHhCccccccccCCC
Confidence 543 3456789999999988875 9999997531 111222 22223333322 22345666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
...||||||||++|||||+++|++++|||||+|||+.++..+.+.|+++.++|+|+|+++|+++ ..+.+|++++|.
T Consensus 452 -g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~- 527 (544)
T TIGR01842 452 -GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQ- 527 (544)
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEE-
Confidence 3579999999999999999999999999999999999999999999998767899999999974 567899999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|++++.|+.+
T Consensus 528 ~G~i~~~g~~~ 538 (544)
T TIGR01842 528 DGRIARFGERD 538 (544)
T ss_pred CCEEEeeCCHH
Confidence 59999999863
No 317
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-34 Score=295.74 Aligned_cols=218 Identities=21% Similarity=0.368 Sum_probs=182.3
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
+.-+.++|++..+. +++||+|+|++|+|||-.+|+|||||||||||++++|..+|. +|.+.+.|
T Consensus 29 ~~li~l~~v~v~r~--------------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G 92 (257)
T COG1119 29 EPLIELKNVSVRRN--------------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLG 92 (257)
T ss_pred cceEEecceEEEEC--------------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeee
Confidence 34589999998773 578999999999999999999999999999999999988774 89999999
Q ss_pred EeCcc----ccccceEEEeccC--CCCCCCCCHHHHHHHHH--hhccCCCCChhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 694 YPKIQ----ETFVRVSGYCEQT--DIHSPHITIEESLFFSA--WLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 694 ~~~~~----~~~~~~~~~v~q~--~~~~~~lTv~e~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
+.... ...++.||+|.-. ..+.++.+|+|-+.-+. ..........++..+++..+++.+|+.+..|+..+
T Consensus 93 ~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~-- 170 (257)
T COG1119 93 RRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG-- 170 (257)
T ss_pred eeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh--
Confidence 87432 3467889999643 34456778888774322 12222212345566788999999999999998875
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEecCCCHHHHHhhceEEEE
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT--GRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
.||-||||||-|||||+.+|++||||||++|||...+..+.+.|.+++.. +.++|++||+++ |+-..|++++++
T Consensus 171 ---~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll 246 (257)
T COG1119 171 ---SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLL 246 (257)
T ss_pred ---hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEe
Confidence 79999999999999999999999999999999999999999999999865 889999999986 788899999999
Q ss_pred ecCCEEEEEcC
Q 000937 844 KTGGRIIYSGP 854 (1218)
Q Consensus 844 ~~~G~~~~~g~ 854 (1218)
+ +|+++++|.
T Consensus 247 ~-~g~v~~~g~ 256 (257)
T COG1119 247 K-EGEVVAQGK 256 (257)
T ss_pred e-CCceeeccc
Confidence 8 599999874
No 318
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-33 Score=303.16 Aligned_cols=198 Identities=20% Similarity=0.291 Sum_probs=160.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. ..+.+++|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~ 71 (207)
T cd03369 6 EIEVENLSVRYAP------------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE--EGKIEIDGID 71 (207)
T ss_pred eEEEEEEEEEeCC------------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCeEEECCEE
Confidence 4789999988742 1236899999999999999999999999999999999988764 8999999987
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
... ...++.++|++|++.+++ .|++||+.+.. .... +.+.+.++ + +.. +..|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~~~-----~~~LS~ 128 (207)
T cd03369 72 ISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----SEG-----GLNLSQ 128 (207)
T ss_pred hHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----cCC-----CCcCCH
Confidence 532 223567999999987776 59999996421 1111 12233333 1 222 358999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||+++ .+ ..+|++++|. +|+++..
T Consensus 129 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~-~~~d~v~~l~-~g~i~~~ 204 (207)
T cd03369 129 GQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TI-IDYDKILVMD-AGEVKEY 204 (207)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEE-CCEEEec
Confidence 99999999999999999999999999999999999999999985 4899999999975 34 4599999998 5899887
Q ss_pred cC
Q 000937 853 GP 854 (1218)
Q Consensus 853 g~ 854 (1218)
|+
T Consensus 205 g~ 206 (207)
T cd03369 205 DH 206 (207)
T ss_pred CC
Confidence 75
No 319
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=7.8e-33 Score=360.65 Aligned_cols=136 Identities=23% Similarity=0.335 Sum_probs=108.0
Q ss_pred CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCc
Q 000937 714 HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGIPGVSGLSTEQRKRLTIGVELV---ANPS 789 (1218)
Q Consensus 714 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGerqRv~ia~~L~---~~p~ 789 (1218)
.+...||.|+|.++..-.........+..+++ ++++.+||.+. .+... .+||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999886542211111123334455 47888999765 45553 479999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEEcCCCC
Q 000937 790 IIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK-----TGGRIIYSGPLGN 857 (1218)
Q Consensus 790 llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~~~~g~~~~ 857 (1218)
+++|||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|+++..|++++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~--~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH--VVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 99999999999999999999999999888999999999975 348999999995 3589999998753
No 320
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.2e-34 Score=316.29 Aligned_cols=212 Identities=22% Similarity=0.289 Sum_probs=164.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++. ..+.+++|+|++++|||+++|+||||||||||+++|+|+.++ .+|+|.++|+
T Consensus 18 ~~i~~~~l~~~~~~------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~ 83 (257)
T cd03288 18 GEIKIHDLCVRYEN------------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI--FDGKIVIDGI 83 (257)
T ss_pred ceEEEEEEEEEeCC------------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC--CCCeEEECCE
Confidence 35889999998742 124699999999999999999999999999999999998876 4899999998
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccc-------cccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK-------ESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~ 764 (1218)
++.. ...++.++|++|++.+++ .|++||+.... .... +.+.++++..++.+.. ++..+.
T Consensus 84 ~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~ 152 (257)
T cd03288 84 DISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVTE 152 (257)
T ss_pred EhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEecc
Confidence 8542 234567999999987776 59999874311 0111 1122333333332211 111221
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.++++. ++.|||+++|+++ .+ ..+|++++|.
T Consensus 153 -~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~-~~~dri~~l~ 228 (257)
T cd03288 153 -GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TI-LDADLVLVLS 228 (257)
T ss_pred -CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HH-HhCCEEEEEE
Confidence 235899999999999999999999999999999999999999999999874 4899999999986 34 4599999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|+++..|+++
T Consensus 229 -~G~i~~~g~~~ 239 (257)
T cd03288 229 -RGILVECDTPE 239 (257)
T ss_pred -CCEEEEeCCHH
Confidence 59999998763
No 321
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=6.7e-34 Score=318.78 Aligned_cols=223 Identities=27% Similarity=0.414 Sum_probs=184.7
Q ss_pred cccCCCceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceee
Q 000937 608 MILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKG 687 (1218)
Q Consensus 608 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G 687 (1218)
+.+|...-.++.+++++. + + ..++.+|+|+||++.+||.++|+||||||||||.|+|.|..+| .+|
T Consensus 326 m~LP~P~g~L~Ve~l~~~-P--P---------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p--~~G 391 (580)
T COG4618 326 MPLPAPQGALSVERLTAA-P--P---------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP--TSG 391 (580)
T ss_pred CCCCCCCceeeEeeeeec-C--C---------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc--CCC
Confidence 445555667899999882 2 2 1356899999999999999999999999999999999998877 489
Q ss_pred EEEECCEeCc---cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHH-----HHHHHHHHHcCCCcccc
Q 000937 688 EIKVNGYPKI---QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKA-----DCVNHVLKTIELDGIKE 759 (1218)
Q Consensus 688 ~i~~~g~~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~ 759 (1218)
.|++||.+.. .+.+-+.+||.||+-.+|+ -||.||+. |...+.+.++.- ..+.++ .+.+.+-.|
T Consensus 392 ~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa-----Rf~~~~d~~kIieAA~lAgvHel--Il~lP~GYd 463 (580)
T COG4618 392 SVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA-----RFGEEADPEKVIEAARLAGVHEL--ILRLPQGYD 463 (580)
T ss_pred cEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH-----hccccCCHHHHHHHHHHcChHHH--HHhCcCCcc
Confidence 9999998754 3456788999999888877 59999994 232222222111 112232 346778899
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce
Q 000937 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDE 839 (1218)
Q Consensus 760 ~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 839 (1218)
|.+|+.+ ..||||||||+++||||-.+|.+++||||-|+||.+....+.+.|..++++|.|+|+++|.|+ +...+|+
T Consensus 464 T~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dk 540 (580)
T COG4618 464 TRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDK 540 (580)
T ss_pred CccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcce
Confidence 9999765 689999999999999999999999999999999999999999999999999999999999985 6889999
Q ss_pred EEEEecCCEEEEEcCCC
Q 000937 840 LILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 840 ~~~l~~~G~~~~~g~~~ 856 (1218)
+++|. +|++..+|+.+
T Consensus 541 ilvl~-~G~~~~FG~r~ 556 (580)
T COG4618 541 ILVLQ-DGRIAAFGPRE 556 (580)
T ss_pred eeeec-CChHHhcCCHH
Confidence 99997 69999999974
No 322
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1e-33 Score=345.54 Aligned_cols=207 Identities=17% Similarity=0.220 Sum_probs=173.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+| .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p--~~G~i~~~~~~ 66 (490)
T PRK10938 3 SLQISQGTFRLS--------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL--LSGERQSQFSH 66 (490)
T ss_pred eEEEEeEEEEcC--------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCceEEECCcc
Confidence 378899999873 23599999999999999999999999999999999998876 48999999876
Q ss_pred Ccc---ccccceEEEeccCCCC--C------CCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIH--S------PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~--~------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 764 (1218)
... ...++.++|++|++.. + ..+||+|++.+. ....++++++++.+++.+..+..+
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~-- 133 (490)
T PRK10938 67 ITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF-- 133 (490)
T ss_pred cccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc--
Confidence 432 1233558999997542 1 147888876431 122456788999999987777765
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|.
T Consensus 134 ---~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~ 209 (490)
T PRK10938 134 ---KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLA 209 (490)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 479999999999999999999999999999999999999999999999888999999999985 5678899999997
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|+++..|+++
T Consensus 210 -~G~i~~~~~~~ 220 (490)
T PRK10938 210 -DCTLAETGERE 220 (490)
T ss_pred -CCEEEEeCCHH
Confidence 59999998764
No 323
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.4e-33 Score=299.30 Aligned_cols=191 Identities=21% Similarity=0.294 Sum_probs=157.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+++ +|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 l~~~~l~~~~~--------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i 64 (195)
T PRK13541 2 LSLHQLQFNIE--------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP--SSGNIYYKNCNI 64 (195)
T ss_pred eEEEEeeEEEC--------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCccc
Confidence 57889988873 134555 9999999999999999999999999999998876 489999999876
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 697 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
.... ++.++|++|+..+++.+||+||+.+..... . ..+.++++++.+++.+..++.+ +.|||||||
T Consensus 65 ~~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~ 130 (195)
T PRK13541 65 NNIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY-----N---SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQK 130 (195)
T ss_pred Chhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc-----c---cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHH
Confidence 4322 345899999988888999999998754321 0 1345677888999877666553 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceE
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDEL 840 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 840 (1218)
|++||++|+.+|++++|||||+|||+.++..+.+.|++.+++|+|+|+++|+++ ..+.+|-+
T Consensus 131 rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~ 192 (195)
T PRK13541 131 IVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES--SIKSAQIL 192 (195)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc--ccchhhee
Confidence 999999999999999999999999999999999999877777999999999975 34455543
No 324
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.3e-33 Score=290.78 Aligned_cols=164 Identities=26% Similarity=0.376 Sum_probs=142.4
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 2 ~~~~~~~~~~~-------------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~--- 63 (166)
T cd03223 2 ELENLSLATPD-------------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW--GSGRIGMPEG--- 63 (166)
T ss_pred EEEEEEEEcCC-------------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCC---
Confidence 57888887631 24699999999999999999999999999999999998776 4899999873
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000937 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKR 777 (1218)
Q Consensus 698 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqR 777 (1218)
+.++|++|++.++ ..|++||+.+. . ...||||||||
T Consensus 64 -----~~i~~~~q~~~~~-~~tv~~nl~~~---------------------------------~-----~~~LS~G~~~r 99 (166)
T cd03223 64 -----EDLLFLPQRPYLP-LGTLREQLIYP---------------------------------W-----DDVLSGGEQQR 99 (166)
T ss_pred -----ceEEEECCCCccc-cccHHHHhhcc---------------------------------C-----CCCCCHHHHHH
Confidence 5689999997654 67999998642 0 24799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 778 LTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 778 v~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
++|||+|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||+++ ....+|+++++.++|.
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCCC
Confidence 99999999999999999999999999999999999886 689999999974 4578999999987663
No 325
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.2e-33 Score=288.80 Aligned_cols=158 Identities=26% Similarity=0.440 Sum_probs=137.8
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++++++|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+.
T Consensus 1 l~~~~l~~~~~--------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~ 64 (163)
T cd03216 1 LELRGITKRFG--------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP--DSGEILVDGKEV 64 (163)
T ss_pred CEEEEEEEEEC--------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEC
Confidence 35788888773 23699999999999999999999999999999999999876 489999999875
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 697 IQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 697 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
... ..++.++|++| |||
T Consensus 65 ~~~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~ 85 (163)
T cd03216 65 SFASPRDARRAGIAMVYQ-----------------------------------------------------------LSV 85 (163)
T ss_pred CcCCHHHHHhcCeEEEEe-----------------------------------------------------------cCH
Confidence 421 12345777776 899
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.+.+|+++++. +|++++
T Consensus 86 G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~-~g~i~~ 162 (163)
T cd03216 86 GERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLR-DGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEe
Confidence 9999999999999999999999999999999999999999999877999999999974 4667899999997 588864
No 326
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=9.9e-34 Score=359.42 Aligned_cols=213 Identities=27% Similarity=0.444 Sum_probs=176.0
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|++|.++. +++.+|+|+|++++|||.+||+||||||||||+|+|+|+.+|. +|+|++||.
T Consensus 454 ~~i~~~~vsf~y~~------------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~--~G~I~idg~ 519 (694)
T TIGR01846 454 GAITFENIRFRYAP------------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ--HGQVLVDGV 519 (694)
T ss_pred CeEEEEEEEEEcCC------------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCE
Confidence 46899999999852 1246999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 764 (1218)
++.+ ..+++.++||+|++.+++ .|++||+.++. +..+ .+.+.++++..++. +-.|+.++.
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCC----HHHHHHHHHHcChHHHHHhCcCccCcEecC
Confidence 8643 356778999999988876 69999997631 1122 22344445554443 235677776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ .+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +|+|+|++||+++ ..+.+|++++|+
T Consensus 590 ~g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~ 665 (694)
T TIGR01846 590 KG-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE 665 (694)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe
Confidence 54 5799999999999999999999999999999999999999999999984 5899999999984 467799999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|+.+
T Consensus 666 -~G~i~~~g~~~ 676 (694)
T TIGR01846 666 -KGQIAESGRHE 676 (694)
T ss_pred -CCEEEEeCCHH
Confidence 59999999864
No 327
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.8e-33 Score=348.72 Aligned_cols=212 Identities=22% Similarity=0.389 Sum_probs=174.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. +++.+|+|+|+++++||.++|+||||||||||+++|+|..+|. +|+|.+||++
T Consensus 313 ~I~~~~v~~~y~~------------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~--~G~i~~~g~~ 378 (569)
T PRK10789 313 ELDVNIRQFTYPQ------------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS--EGDIRFHDIP 378 (569)
T ss_pred cEEEEEEEEECCC------------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCEEEECCEE
Confidence 5889999998852 1246899999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCC-------CccccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-------DGIKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~ 765 (1218)
... ..+++.++|++|++.+++ .|++||+.++. +..+. +.++++++..++ .+-.|+.+|..
T Consensus 379 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 448 (569)
T PRK10789 379 LTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGR-----PDATQ----QEIEHVARLASVHDDILRLPQGYDTEVGER 448 (569)
T ss_pred HhhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCC
Confidence 543 345678999999998886 59999997641 11122 234444555444 33446666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+ ..||||||||++|||+|+++|++++|||||++||+.++..+.+.|+++. +|+|+|+++|+++ ..+.+|++++|.
T Consensus 449 g-~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~- 523 (569)
T PRK10789 449 G-VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQ- 523 (569)
T ss_pred C-CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEe-
Confidence 3 5799999999999999999999999999999999999999999999975 5899999999974 467899999997
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 524 ~G~i~~~g~~~ 534 (569)
T PRK10789 524 HGHIAQRGNHD 534 (569)
T ss_pred CCEEEEecCHH
Confidence 59999999863
No 328
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.1e-34 Score=281.45 Aligned_cols=219 Identities=25% Similarity=0.377 Sum_probs=184.7
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC-
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG- 693 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g- 693 (1218)
..+..+|++++++ ...+|+|+||++.|||+-+|+|||||||||+|++|+|...| .+|+++++|
T Consensus 4 ~iL~~~~vsVsF~--------------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp--~~G~v~f~g~ 67 (249)
T COG4674 4 IILYLDGVSVSFG--------------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP--QEGEVLFDGD 67 (249)
T ss_pred ceEEEeceEEEEc--------------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC--CcceEEEcCc
Confidence 4578888888874 46799999999999999999999999999999999998776 389999999
Q ss_pred EeCcc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCC-----CCChhhHHHHHHHHHHHcCCCccccccccC
Q 000937 694 YPKIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP-----QINSKTKADCVNHVLKTIELDGIKESLVGI 764 (1218)
Q Consensus 694 ~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 764 (1218)
.++.. +..+..+|--+|.+..|+.+||+|||..+.....+- .....+.+++++++++..||.+.++...+
T Consensus 68 ~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~- 146 (249)
T COG4674 68 TDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA- 146 (249)
T ss_pred hhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh-
Confidence 55432 123456888999999999999999999875422110 01123445689999999999998888765
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.||.||||++.|++-++++|++|+||||++|+-.+...+.-++|++++. +++|+++.||+. -+-+.++++.+|.
T Consensus 147 ----~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh 220 (249)
T COG4674 147 ----LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLH 220 (249)
T ss_pred ----hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEe
Confidence 6999999999999999999999999999999999999999999999975 689999999975 3567789999997
Q ss_pred cCCEEEEEcCCCC
Q 000937 845 TGGRIIYSGPLGN 857 (1218)
Q Consensus 845 ~~G~~~~~g~~~~ 857 (1218)
.|.+...|+.++
T Consensus 221 -~G~VL~EGsld~ 232 (249)
T COG4674 221 -EGSVLAEGSLDE 232 (249)
T ss_pred -ccceeecccHHH
Confidence 599999999764
No 329
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.2e-33 Score=352.53 Aligned_cols=213 Identities=24% Similarity=0.390 Sum_probs=177.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++++++. .++.+|+|+|+++++||.++|+|+||||||||+++|+|+.+|. +|+|.+||.+
T Consensus 330 ~i~~~~v~f~y~~------------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~--~G~I~i~g~~ 395 (571)
T TIGR02203 330 DVEFRNVTFRYPG------------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD--SGQILLDGHD 395 (571)
T ss_pred eEEEEEEEEEcCC------------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCeEEECCEe
Confidence 5899999999852 1246999999999999999999999999999999999998874 8999999988
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 765 (1218)
..+ ...++.++|++|++.+++ -|++||+.++. +++. .++.++++++..++.+ -.|+.+|..
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~----~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~ 466 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQA----DRAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466 (571)
T ss_pred HHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCC----CHHHHHHHHHHcChHHHHHhCcCcccceecCC
Confidence 542 346678999999998775 59999997641 1112 2334566677666543 346667765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+ +.||||||||++|||+++++|++++||||||+||+.+++.+.+.|++++ +++|+|++||++ +..+.+|+++++.
T Consensus 467 g-~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~- 541 (571)
T TIGR02203 467 G-VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMD- 541 (571)
T ss_pred C-CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEe-
Confidence 3 5799999999999999999999999999999999999999999999875 479999999997 4678899999997
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 542 ~g~i~~~g~~~ 552 (571)
T TIGR02203 542 DGRIVERGTHN 552 (571)
T ss_pred CCEEEeeCCHH
Confidence 59999998864
No 330
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.1e-32 Score=339.89 Aligned_cols=124 Identities=27% Similarity=0.367 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCcEEE
Q 000937 717 HITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGIPGVSGLSTEQRKRLTIGVELVA---NPSIIF 792 (1218)
Q Consensus 717 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGerqRv~ia~~L~~---~p~lll 792 (1218)
++||.|.+.|...+. . .....++++.+||... .+.. .++|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~------~---i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP------S---ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc------c---hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 468888887764321 0 1124567888898753 3444 35799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEEcCCC
Q 000937 793 MDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK-----TGGRIIYSGPLG 856 (1218)
Q Consensus 793 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~~~~g~~~ 856 (1218)
|||||+|||+..+..+++.|+++.++|.|||+++|+++ +...+|+++.|. ++|++++.|+++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999874 457899999993 479999999863
No 331
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.1e-33 Score=348.89 Aligned_cols=188 Identities=28% Similarity=0.429 Sum_probs=157.5
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|++|.++. ++++|+|+|+++++||.+||+||||||||||+|+|+|..+|. +|+|.+||.
T Consensus 333 ~~I~~~~vsf~Y~~-------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~--~G~I~i~g~ 397 (529)
T TIGR02868 333 PTLELRDLSFGYPG-------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL--QGEVTLDGV 397 (529)
T ss_pred ceEEEEEEEEecCC-------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCE
Confidence 35899999999852 235999999999999999999999999999999999998874 899999998
Q ss_pred eCc--cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccCC
Q 000937 695 PKI--QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGIP 765 (1218)
Q Consensus 695 ~~~--~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 765 (1218)
++. ...+++.++||+|++.+++ -|++||+.++. ++.+ ++.++++++..++. +-.|+.+|..
T Consensus 398 ~i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 467 (529)
T TIGR02868 398 SVSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR-----PDAT----DEELWAALERVGLADWLRSLPDGLDTVLGEG 467 (529)
T ss_pred EhhhHHHHHHhheEEEccCccccc-ccHHHHHhccC-----CCCC----HHHHHHHHHHcCCHHHHHhCcccccchhccc
Confidence 854 3456778999999998876 59999998751 1112 23455666665554 3457888875
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQP 829 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 829 (1218)
+ ..||||||||++|||||+++|++|+||||||+||++++..+.+.|+++. +++|+|+++|++
T Consensus 468 G-~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 468 G-ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred c-CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 5 4699999999999999999999999999999999999999999999863 579999999974
No 332
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4.6e-33 Score=345.49 Aligned_cols=211 Identities=25% Similarity=0.333 Sum_probs=171.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. ++++|+|+|+++++||.++|+||||||||||+++|+|..+| .+|+|.+||.+
T Consensus 334 ~i~~~~v~~~y~~-------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~ 398 (585)
T TIGR01192 334 AVEFRHITFEFAN-------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP--TVGQILIDGID 398 (585)
T ss_pred eEEEEEEEEECCC-------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC--CCCEEEECCEE
Confidence 5899999998842 23589999999999999999999999999999999999887 48999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcC-------CCccccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE-------LDGIKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 765 (1218)
... ..+++.++|++|++.+++ .|++||+.++. +..+.++ +.+.++..+ +.+..|+.+|..
T Consensus 399 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~~ 468 (585)
T TIGR01192 399 INTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR-----EGATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGER 468 (585)
T ss_pred hhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhCcHHHHHhccccccchhcCC
Confidence 543 346678999999988775 69999998742 1122222 222333322 233345666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
...||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|+++. +|+|+|+++|+++ ..+.+|++++|.
T Consensus 469 -~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~- 543 (585)
T TIGR01192 469 -GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLD- 543 (585)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999874 5899999999984 457899999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 544 ~G~i~~~g~~~ 554 (585)
T TIGR01192 544 QGRLIEKGSFQ 554 (585)
T ss_pred CCEEEEECCHH
Confidence 59999999863
No 333
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.1e-33 Score=300.12 Aligned_cols=196 Identities=22% Similarity=0.371 Sum_probs=149.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 1 l~~~~l~~~~~~~~---------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~--~~G~i~~~g--- 66 (204)
T cd03250 1 ISVEDASFTWDSGE---------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK--LSGSVSVPG--- 66 (204)
T ss_pred CEEeEEEEecCCCC---------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCCeEEEcC---
Confidence 35788888763200 0013699999999999999999999999999999999998876 489999998
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccc-------cccccCCCCCC
Q 000937 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK-------ESLVGIPGVSG 769 (1218)
Q Consensus 697 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~~~ 769 (1218)
.++|++|++.++ ..|++||+.+... ... +...+.++.+++.+.. ++.... ...+
T Consensus 67 -------~i~~~~q~~~l~-~~t~~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~ 127 (204)
T cd03250 67 -------SIAYVSQEPWIQ-NGTIRENILFGKP------FDE----ERYEKVIKACALEPDLEILPDGDLTEIGE-KGIN 127 (204)
T ss_pred -------EEEEEecCchhc-cCcHHHHhccCCC------cCH----HHHHHHHHHcCcHHHHHhccCcccceecC-CCCc
Confidence 489999998877 5799999977421 111 1122333333332211 111221 2468
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR-AVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 770 LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
||+|||||++|||+|+.+|++++|||||+|||+.++..+.+ ++++++++|+|||++||+++ .+. .+|++++|.+ |+
T Consensus 128 lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~-~~d~i~~l~~-G~ 204 (204)
T cd03250 128 LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLP-HADQIVVLDN-GR 204 (204)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHh-hCCEEEEEeC-CC
Confidence 99999999999999999999999999999999999999998 56777666899999999975 344 4999999974 53
No 334
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.5e-33 Score=320.30 Aligned_cols=185 Identities=27% Similarity=0.431 Sum_probs=158.9
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChh
Q 000937 661 LMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSK 739 (1218)
Q Consensus 661 l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 739 (1218)
|+|||||||||||++|+|+.++. +|+|.++|++... ...++.++|++|+..+++++||+||+.|+...+ .....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~--~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD--SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC--ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 68999999999999999998774 8999999988643 223567999999999999999999999875432 12233
Q ss_pred hHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 000937 740 TKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT- 818 (1218)
Q Consensus 740 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 818 (1218)
+..++++++++.+++.+..++.. .+|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 44567889999999988777664 479999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 819 GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 819 g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
|+|+|++||+++ ++...+|++++|. +|+++..|++++
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~-~G~i~~~g~~~~ 187 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMR-KGKIAQIGTPEE 187 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 999999999985 6778899999998 599999998743
No 335
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-33 Score=291.08 Aligned_cols=166 Identities=33% Similarity=0.543 Sum_probs=142.5
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. .+..+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++..
T Consensus 2 ~~~~l~~~~~~------------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~ 67 (171)
T cd03228 2 EFKNVSFSYPG------------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLR 67 (171)
T ss_pred EEEEEEEEcCC------------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhh
Confidence 57788877631 113699999999999999999999999999999999999876 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 698 Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 698 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
. ...++.++|++|++.+++ .|+.||+ |||||
T Consensus 68 ~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~ 101 (171)
T cd03228 68 DLDLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQ 101 (171)
T ss_pred hcCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHH
Confidence 2 233567999999987665 5888876 89999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++||+++ ++ +.+|++++|.+ |
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~~~~l~~-g 170 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TI-RDADRIIVLDD-G 170 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-HhCCEEEEEcC-C
Confidence 9999999999999999999999999999999999999999864 799999999985 44 44999999974 5
No 336
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.7e-33 Score=301.67 Aligned_cols=188 Identities=25% Similarity=0.366 Sum_probs=148.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc-------ccccceEEEeccCCCCC
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-------ETFVRVSGYCEQTDIHS 715 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~ 715 (1218)
+.+++|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 4699999999999999999999999999999999999876 48999999986432 11345699999998777
Q ss_pred CCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcccc-------ccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000937 716 PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE-------SLVGIPGVSGLSTEQRKRLTIGVELVANP 788 (1218)
Q Consensus 716 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~~~~~~LSgGerqRv~ia~~L~~~p 788 (1218)
..|++||+.+... ... +..+++++.+++.+..+ +..+. .+..||||||||++||++|+.+|
T Consensus 92 -~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGE-RGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCccc-CCCcCCHHHHHHHHHHHHHhhCC
Confidence 5799999976421 111 12334555556543221 11111 24689999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHH--HHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 789 SIIFMDEPTTGLDARAAAIVMR--AVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 789 ~llllDEPtsgLD~~~~~~i~~--~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
++++|||||+|||+.++..+++ +++.+.++|+|+|++||+++ . ...+|++++|. +|
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~-~~~~d~i~~l~-~G 217 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-Y-LPHADWIIAMK-DG 217 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-H-HhhCCEEEEec-CC
Confidence 9999999999999999999998 67777666899999999985 3 46799999987 45
No 337
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.7e-33 Score=349.65 Aligned_cols=214 Identities=24% Similarity=0.376 Sum_probs=175.5
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++.. +++.+|+|+|++++|||.++|+||||||||||+|+|+|+.+|. +|+|.+||.
T Consensus 336 ~~i~~~~v~f~y~~~-----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~--~G~I~i~g~ 402 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR-----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ--SGRILLDGV 402 (576)
T ss_pred ceEEEEEEEEECCCC-----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCEEEECCE
Confidence 358999999998531 1246999999999999999999999999999999999998874 899999998
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 764 (1218)
++.+ ..+++.++|+||++.+++ .|++||+.++. +..+ ++.++++++..++.+ -.|+.+|.
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~-----~~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~ 472 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQDPVLFA-ASVMENIRYGR-----PDAT----DEEVEAAARAAHAHEFISALPEGYDTYLGE 472 (576)
T ss_pred EHHhcCHHHHHHhceEEccCCcccc-ccHHHHHhcCC-----CCCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCC
Confidence 8643 345678999999888765 69999997641 1111 233555666655532 23555665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
. ...||||||||++|||+++++|++++||||||+||+.+++.+.+.|+++. +++|+|++||++ +....+|+++.+.
T Consensus 473 ~-g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~ 548 (576)
T TIGR02204 473 R-GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMD 548 (576)
T ss_pred C-CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEE
Confidence 4 35799999999999999999999999999999999999999999999985 489999999987 4578899999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 549 -~g~~~~~g~~~ 559 (576)
T TIGR02204 549 -QGRIVAQGTHA 559 (576)
T ss_pred -CCEEEeeecHH
Confidence 59999999853
No 338
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8.2e-33 Score=304.46 Aligned_cols=201 Identities=20% Similarity=0.265 Sum_probs=158.2
Q ss_pred eeeeceEEEEe-----CCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCC
Q 000937 644 QLLDDVTGTLR-----PGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHI 718 (1218)
Q Consensus 644 ~iL~~vs~~i~-----~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l 718 (1218)
+.++|++++++ +||+++|+||||||||||+++|+|..+|. +|+|.++|. .++|++|+....+.+
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~--~G~i~~~g~---------~i~~~~q~~~~~~~~ 76 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD--EGDIEIELD---------TVSYKPQYIKADYEG 76 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CCeEEECCc---------eEEEecccccCCCCC
Confidence 35677777775 79999999999999999999999988764 899999884 489999998777889
Q ss_pred CHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000937 719 TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798 (1218)
Q Consensus 719 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPts 798 (1218)
||+|++.+...... . .....+++++.+++.+..++.+ .+|||||||||+||++|+.+|++++|||||+
T Consensus 77 tv~e~l~~~~~~~~-----~--~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~ 144 (246)
T cd03237 77 TVRDLLSSITKDFY-----T--HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSA 144 (246)
T ss_pred CHHHHHHHHhhhcc-----c--cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999876432110 0 1223567888999987766654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE--EEcCCCCCchhhhhhhhcC
Q 000937 799 GLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII--YSGPLGNHSSRVIEYFEGI 869 (1218)
Q Consensus 799 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~--~~g~~~~~~~~~~~~f~~~ 869 (1218)
+||+.++..+.+.|++++++ |+|||++||++. .+...+|++++|.. +..+ ..+++....+.+..|++..
T Consensus 145 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (246)
T cd03237 145 YLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEG-EPSVNGVANPPQSLRSGMNRFLKNL 216 (246)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC-CCeeEEEeCCchHHHHHHHHHHHHC
Confidence 99999999999999999764 899999999975 45668999999963 3222 2334433333455555544
No 339
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=292.77 Aligned_cols=202 Identities=27% Similarity=0.439 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc--ccccceEEEec-cCCCCCCCCC
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ--ETFVRVSGYCE-QTDIHSPHIT 719 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~lT 719 (1218)
..+++|+||+|++|++++++|||||||||+||+|+|+..| .+|.|.++|.+... +.+-+.+++|+ |...+...+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p--~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP--TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc--CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 4589999999999999999999999999999999999887 48999999987432 33445666654 4455666777
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000937 720 IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799 (1218)
Q Consensus 720 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsg 799 (1218)
+.|.+....... +.+.++-+++.+.+.+.|++++..+..+ +.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 888876654433 3455666788899999999998877775 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 800 LDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 800 LD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
||..++..+.+.|++..+ .+.||+.+||+.+ ++...||++++++ .|+++|+|+.+
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~-~Gqlv~dg~l~ 242 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLID-QGQLVFDGTLA 242 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEee-CCcEeecccHH
Confidence 999999999999999865 4999999999997 8999999999998 59999999974
No 340
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=4.2e-33 Score=343.80 Aligned_cols=200 Identities=31% Similarity=0.485 Sum_probs=166.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++|+++. +++++|+|+|++++|||.++|+||||||||||+|+|+|+.+|. +|+|.+||.+
T Consensus 320 ~i~~~~v~f~y~~------------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~I~~~g~~ 385 (529)
T TIGR02857 320 SLEFSGLSVAYPG------------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVP 385 (529)
T ss_pred eEEEEEEEEECCC------------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEe
Confidence 5899999999852 1246999999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 765 (1218)
..+ ..+++.++||+|++.+++ .|++||+.++. +..+ ++.++++++..++.+ -.|+.+|..
T Consensus 386 i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~ 455 (529)
T TIGR02857 386 LADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR-----PDAS----DAEIRRALERAGLDEFVAALPQGLDTLIGEG 455 (529)
T ss_pred hhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC-----CCCC----HHHHHHHHHHcCcHHHHHhCcccccchhccc
Confidence 643 456778999999998886 69999998742 1111 234555666666543 346777764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+ ..||||||||++|||+|+++|++++||||||+||+.+++.+.+.|+++. +++|+|+++|++ +..+.+|++++|
T Consensus 456 g-~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~--~~~~~~d~i~~l 529 (529)
T TIGR02857 456 G-AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRL--ALAERADRIVVL 529 (529)
T ss_pred c-ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCH--HHHHhCCEEEeC
Confidence 4 5799999999999999999999999999999999999999999999875 589999999997 456889999874
No 341
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=6.2e-32 Score=337.70 Aligned_cols=219 Identities=23% Similarity=0.365 Sum_probs=185.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.+||++
T Consensus 4 ~l~~~nl~~~y~~~----------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~ 71 (648)
T PRK10535 4 LLELKDIRRSYPSG----------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP--TSGTYRVAGQD 71 (648)
T ss_pred EEEEeeEEEEeCCC----------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEE
Confidence 47899999988421 1124699999999999999999999999999999999999876 48999999998
Q ss_pred Cccc---c----ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCC
Q 000937 696 KIQE---T----FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768 (1218)
Q Consensus 696 ~~~~---~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 768 (1218)
+... . .++.++|++|+..+++.+|+.||+.+..... .....+.++++.++++.+++.+..|... .
T Consensus 72 i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~ 143 (648)
T PRK10535 72 VATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----S 143 (648)
T ss_pred cCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----c
Confidence 5431 1 1457999999999999999999998764322 1223444567888999999987777664 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
.||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|+++|+++ ..+.+|++++|. +|+
T Consensus 144 ~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~-~G~ 220 (648)
T PRK10535 144 QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIR-DGE 220 (648)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEE-CCE
Confidence 79999999999999999999999999999999999999999999999877999999999874 456799999998 599
Q ss_pred EEEEcCCCC
Q 000937 849 IIYSGPLGN 857 (1218)
Q Consensus 849 ~~~~g~~~~ 857 (1218)
+++.|+.++
T Consensus 221 i~~~g~~~~ 229 (648)
T PRK10535 221 IVRNPPAQE 229 (648)
T ss_pred EEeecCccc
Confidence 999998854
No 342
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.9e-32 Score=302.02 Aligned_cols=199 Identities=21% Similarity=0.370 Sum_probs=156.3
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
+..++++|+++. . +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|
T Consensus 37 ~~~l~i~nls~~-~---------------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~--~G~I~i~g 98 (282)
T cd03291 37 DNNLFFSNLCLV-G---------------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS--EGKIKHSG 98 (282)
T ss_pred CCeEEEEEEEEe-c---------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECC
Confidence 456899999873 1 25899999999999999999999999999999999998764 89999988
Q ss_pred EeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccc-------cccccCCC
Q 000937 694 YPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK-------ESLVGIPG 766 (1218)
Q Consensus 694 ~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~ 766 (1218)
.++|++|++.+++. ||+||+.+.... .. ..+.+.++.+++.+.. ++.++. .
T Consensus 99 ----------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~ 156 (282)
T cd03291 99 ----------RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE-G 156 (282)
T ss_pred ----------EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecC-C
Confidence 28999999887774 999999864211 11 1122333333433211 222221 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAV-KNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l-~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.+ ++++ ++.|||++||+++ . ...+|++++|.
T Consensus 157 ~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~-~~~~d~i~~l~- 232 (282)
T cd03291 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-H-LKKADKILILH- 232 (282)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-H-HHhCCEEEEEE-
Confidence 3579999999999999999999999999999999999999999865 5554 5799999999975 3 46799999997
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|++++.|+++
T Consensus 233 ~G~i~~~g~~~ 243 (282)
T cd03291 233 EGSSYFYGTFS 243 (282)
T ss_pred CCEEEEECCHH
Confidence 59999998863
No 343
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.5e-32 Score=294.83 Aligned_cols=186 Identities=19% Similarity=0.208 Sum_probs=150.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE-ECCEeCccccccceEEEeccCCCCCCCCCHHHH
Q 000937 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIK-VNGYPKIQETFVRVSGYCEQTDIHSPHITIEES 723 (1218)
Q Consensus 645 iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 723 (1218)
+|+|||+++++||+++|+||||||||||+++|+|..+|. +|+|. ++|... .+.+...+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~--sG~i~~~~~~~~----------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD--EGDFIGLRGDAL----------PLGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC--CCCEEEecCcee----------ccccccccCCcCcHHHH
Confidence 799999999999999999999999999999999988764 89997 776432 12245567889999999
Q ss_pred HHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000937 724 LFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803 (1218)
Q Consensus 724 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~ 803 (1218)
+.+...... ...++ ..+.+.+.+++.+..++.+ ++||||||||++||++|+.+|++++|||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~---~~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDE---FSHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHH---HHHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 988654321 11221 2233445667776666654 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 804 AAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 804 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
++..+.+.+.+..+ ++|+|++||+++ ++...+|++++|. +|++++.|+.+
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 188 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLL-HGKITMCEDLA 188 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEE-CCeEEEeCCHH
Confidence 99999998865443 468999999985 5667899999997 59999999874
No 344
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=5.1e-32 Score=334.44 Aligned_cols=206 Identities=20% Similarity=0.260 Sum_probs=167.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++|.++. ++++|+|+|+++++||.++|+||||||||||+++|+|..+|. +|+|.+||.+
T Consensus 322 ~i~~~~v~f~y~~-------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~ 386 (547)
T PRK10522 322 TLELRNVTFAYQD-------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKP 386 (547)
T ss_pred eEEEEEEEEEeCC-------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEE
Confidence 6899999999852 236899999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
... ..+++.++|++|++.+++ .|++|| . . ...++.+++.++.+++.+..+...+......|||
T Consensus 387 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSg 452 (547)
T PRK10522 387 VTAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSK 452 (547)
T ss_pred CCCCCHHHHhhheEEEecChhHHH-Hhhccc---c------C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCH
Confidence 643 345678999999987765 467766 0 1 1223456778888888754332111001247999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||++|||||+++|++|+||||||+||+.++..+.+.|.+..+ .|+|+|+++|++ +....+|++++++ +|+++.
T Consensus 453 Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~-~G~i~e 529 (547)
T PRK10522 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMR-NGQLSE 529 (547)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEE-CCEEEE
Confidence 999999999999999999999999999999999999999986643 589999999987 4578999999998 588886
Q ss_pred Ec
Q 000937 852 SG 853 (1218)
Q Consensus 852 ~g 853 (1218)
..
T Consensus 530 ~~ 531 (547)
T PRK10522 530 LT 531 (547)
T ss_pred ec
Confidence 63
No 345
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.2e-33 Score=312.19 Aligned_cols=190 Identities=32% Similarity=0.442 Sum_probs=164.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCC--ccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEE--FVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~--~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|+|++||||||+.+...|. .+|+|.++|.+..+ ...++.+|||+|++.++|.|||+|+|+|.+++++...
T Consensus 36 llG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~----- 110 (293)
T COG1131 36 LLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK----- 110 (293)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh-----
Confidence 6899999999999999995 56999999998875 2456779999999999999999999999999986321
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
+.. +..++++++.+||.+.++..+ +++|||||||++||++|+.+|
T Consensus 111 -----~~~------------------------~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P- 155 (293)
T COG1131 111 -----EEA------------------------EERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDP- 155 (293)
T ss_pred -----hHH------------------------HHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCC-
Confidence 010 113688999999999666555 579999999999999999888
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHh
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFES 234 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~ 234 (1218)
++|+|||||+|||+.++.++++.|+++++++++||++|-|++ .++..+||+|++|++|+++++|+.+++...+..
T Consensus 156 ~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 156 ELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 899999999999999999999999999987668999997754 578888999999999999999999998876654
No 346
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=7.6e-32 Score=331.67 Aligned_cols=205 Identities=18% Similarity=0.334 Sum_probs=167.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|++++++ ++++|+|+|++|++||+++|+||||||||||||+|+|..+|. +|+|.++|.
T Consensus 2 l~i~~ls~~~~--------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~--~G~i~~~~~-- 63 (530)
T PRK15064 2 LSTANITMQFG--------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS--AGNVSLDPN-- 63 (530)
T ss_pred EEEEEEEEEeC--------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCC--
Confidence 57889998873 246999999999999999999999999999999999988764 899999872
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHHHh-hc----------cCCC------------------CChhhHHHHHHH
Q 000937 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAW-LR----------LAPQ------------------INSKTKADCVNH 747 (1218)
Q Consensus 697 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~----------~~~~------------------~~~~~~~~~~~~ 747 (1218)
+.++|++|++.+++.+||+|++.++.. .+ .... ....+.++++++
T Consensus 64 ------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (530)
T PRK15064 64 ------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGE 137 (530)
T ss_pred ------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 348999999988899999999986421 00 0000 000122356788
Q ss_pred HHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Q 000937 748 VLKTIELDGIK-ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTI 826 (1218)
Q Consensus 748 ~l~~l~l~~~~-~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~ 826 (1218)
+++.+|+.+.. +..+ .+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++|
T Consensus 138 ~l~~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivs 209 (530)
T PRK15064 138 LLLGVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIIS 209 (530)
T ss_pred HHHhCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEe
Confidence 89999997533 3333 47999999999999999999999999999999999999999999863 589999999
Q ss_pred cCCCHHHHHhhceEEEEecCCEE-EEEcCC
Q 000937 827 HQPSIDIFESFDELILLKTGGRI-IYSGPL 855 (1218)
Q Consensus 827 H~~~~~~~~~~d~~~~l~~~G~~-~~~g~~ 855 (1218)
|+++ .+.+.+|++++|. +|++ ++.|++
T Consensus 210 Hd~~-~~~~~~d~i~~l~-~g~i~~~~g~~ 237 (530)
T PRK15064 210 HDRH-FLNSVCTHMADLD-YGELRVYPGNY 237 (530)
T ss_pred CCHH-HHHhhcceEEEEe-CCEEEEecCCH
Confidence 9975 5677899999998 5888 477875
No 347
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.98 E-value=8.8e-32 Score=332.32 Aligned_cols=211 Identities=20% Similarity=0.258 Sum_probs=168.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++.+. ..++.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.+||.
T Consensus 336 ~~i~~~~v~f~y~~~~---------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~--~G~i~~~g~ 404 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE---------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ--EGEILLDGA 404 (555)
T ss_pred ceEEEEEEEEEeCCCC---------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCE
Confidence 4689999999985310 01236999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcccccc-ccCCCCCCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL-VGIPGVSGL 770 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~L 770 (1218)
++.. ..+++.++||+|++.++. -|+++|+. ....++.++++++.+++.+..+.. -|......|
T Consensus 405 ~i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~~------------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~L 471 (555)
T TIGR01194 405 AVSADSRDDYRDLFSAIFADFHLFD-DLIGPDEG------------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTAL 471 (555)
T ss_pred ECCCCCHHHHHhhCcEEccChhhhh-hhhhcccc------------cchhHHHHHHHHHHcCCchhhcccccccCCcccC
Confidence 8643 345678999999987765 47777731 112334567788888887654332 222223579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK-NVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~-~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||||++|||+|+.+|++++|||||++||+.+++.+.+.+. .++.+|+|+|+++|+++ ..+.+|++++|+ +|++
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~-~G~i 548 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLA-AGCI 548 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999998664 55567999999999874 578999999998 5888
Q ss_pred EEE
Q 000937 850 IYS 852 (1218)
Q Consensus 850 ~~~ 852 (1218)
+..
T Consensus 549 ~~~ 551 (555)
T TIGR01194 549 VKD 551 (555)
T ss_pred EEe
Confidence 753
No 348
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.4e-32 Score=292.73 Aligned_cols=185 Identities=23% Similarity=0.304 Sum_probs=160.0
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
+.|++|||||||.....+ ..+|+|.+||.++...+ .|+.+|++.|+..|+.+.||.||+.|..++.+.
T Consensus 37 IIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~--- 113 (339)
T COG1135 37 IIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV--- 113 (339)
T ss_pred EEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCC---
Confidence 358999999999998776 57899999998887654 367789999999999999999999998887641
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
++++.+ .+|.++++..||++.+|.+ ...|||||||||+||||+.
T Consensus 114 -------~k~ei~------------------------~RV~elLelVgL~dk~~~y-----P~qLSGGQKQRVaIARALa 157 (339)
T COG1135 114 -------PKAEIK------------------------QRVAELLELVGLSDKADRY-----PAQLSGGQKQRVAIARALA 157 (339)
T ss_pred -------CHHHHH------------------------HHHHHHHHHcCChhhhccC-----chhcCcchhhHHHHHHHHh
Confidence 223322 2478899999999999865 4679999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHh-ccceEEEEcCCcEEEecChhhHHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFH-LFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~-lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
.+| +||++|||||+|||.++..|++.|+++.++.|.||++..|+ .++++ .+|||.||++|++++.|+..++..
T Consensus 158 ~~P-~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHE--m~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 158 NNP-KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred cCC-CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEech--HHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 888 89999999999999999999999999999999999998876 45655 499999999999999999887763
No 349
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.98 E-value=1.8e-31 Score=329.18 Aligned_cols=207 Identities=24% Similarity=0.350 Sum_probs=168.0
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.+.. ++.+|+|+||+|++||+++|+|||||||||||++|+|..+| .+|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~~-------------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i~~~~~ 69 (556)
T PRK11819 5 YIYTMNRVSKVVPP-------------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG 69 (556)
T ss_pred EEEEEeeEEEEeCC-------------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC
Confidence 35889999998831 24799999999999999999999999999999999999876 4899999751
Q ss_pred eCccccccceEEEeccCCCCCCCCCHHHHHHHHHh-hc------------cCCCCC--------------------hhhH
Q 000937 695 PKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAW-LR------------LAPQIN--------------------SKTK 741 (1218)
Q Consensus 695 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~------------~~~~~~--------------------~~~~ 741 (1218)
..+||++|++.+++.+||.||+.++.. .+ ...... ..+.
T Consensus 70 --------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (556)
T PRK11819 70 --------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDL 141 (556)
T ss_pred --------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccch
Confidence 358999999999999999999987532 00 000000 0012
Q ss_pred HHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 000937 742 ADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT 821 (1218)
Q Consensus 742 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~t 821 (1218)
.++++++++.+|+.. .+..+ .+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|
T Consensus 142 ~~~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~t 212 (556)
T PRK11819 142 DSQLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GT 212 (556)
T ss_pred HHHHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---Ce
Confidence 345778888999853 45543 4799999999999999999999999999999999999999999999862 59
Q ss_pred EEEEecCCCHHHHHhhceEEEEecCCEEE-EEcCC
Q 000937 822 IVCTIHQPSIDIFESFDELILLKTGGRII-YSGPL 855 (1218)
Q Consensus 822 vi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g~~ 855 (1218)
||++||+++ .+.+.+|++++|. +|+++ +.|+.
T Consensus 213 viiisHd~~-~~~~~~d~i~~l~-~g~i~~~~g~~ 245 (556)
T PRK11819 213 VVAVTHDRY-FLDNVAGWILELD-RGRGIPWEGNY 245 (556)
T ss_pred EEEEeCCHH-HHHhhcCeEEEEe-CCEEEEecCCH
Confidence 999999985 5667899999998 58876 77765
No 350
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.98 E-value=1.1e-31 Score=302.87 Aligned_cols=202 Identities=19% Similarity=0.272 Sum_probs=154.3
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..+.++|++|.++. +..++++++|-+++++-+|++||||||||||||++.|...| ..|.|.-.-+
T Consensus 388 pvi~~~nv~F~y~~-------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H 452 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD-------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSH 452 (614)
T ss_pred CeEEEeccccCCCC-------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--cccccccccc
Confidence 46889999988752 22689999999999999999999999999999999998877 3787754332
Q ss_pred eCccccccceEEEeccC--CCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 695 PKIQETFVRVSGYCEQT--DIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 695 ~~~~~~~~~~~~~v~q~--~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
. .+++..|+ +.+.-+.++-|++.=. ...+...+.++.++..+||.+..+... .++||+
T Consensus 453 ~--------~~~~y~Qh~~e~ldl~~s~le~~~~~--------~~~~~~~e~~r~ilgrfgLtgd~q~~p----~~~LS~ 512 (614)
T KOG0927|consen 453 N--------KLPRYNQHLAEQLDLDKSSLEFMMPK--------FPDEKELEEMRSILGRFGLTGDAQVVP----MSQLSD 512 (614)
T ss_pred c--------cchhhhhhhHhhcCcchhHHHHHHHh--------ccccchHHHHHHHHHHhCCCccccccc----hhhccc
Confidence 2 12333332 3334456777766421 112344566888999999985443321 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||+||..|+.++.+|.+|+|||||+|||..+...+.+.|... ..+||.++||.. -+-+.++++.+..+++...+.
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecC
Confidence 9999999999999999999999999999999999998888764 358999999975 366778888888876666676
Q ss_pred cCC
Q 000937 853 GPL 855 (1218)
Q Consensus 853 g~~ 855 (1218)
|..
T Consensus 589 G~i 591 (614)
T KOG0927|consen 589 GDI 591 (614)
T ss_pred ccH
Confidence 753
No 351
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=7.4e-32 Score=254.88 Aligned_cols=180 Identities=28% Similarity=0.363 Sum_probs=156.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCEeCcc-ccccceEEEeccCCCCCCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKVNGYPKIQ-ETFVRVSGYCEQTDIHSPHIT 719 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lT 719 (1218)
...+|.|+|++|.+||++-||||||||||||+..+.|...+. ..+|++.+|+++.+. ...+|++|..+|++.+||+++
T Consensus 14 g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 357899999999999999999999999999999999976543 468999999998654 345788999999999999999
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000937 720 IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799 (1218)
Q Consensus 720 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsg 799 (1218)
|.+|+.|+ +++....+.++..++..++..||.+..+.. +.+||||||-||++-|+|+..|+.++||||+|.
T Consensus 94 Vg~Nl~fA----lp~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~ 164 (213)
T COG4136 94 VGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFSR 164 (213)
T ss_pred cccceEEe----cCcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchHHHHHHHHHHHhCcceeeeCCchhH
Confidence 99999985 455555567777889999999999887765 358999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH-HHhcCCEEEEEecCCC
Q 000937 800 LDARAAAIVMRAVKN-VADTGRTIVCTIHQPS 830 (1218)
Q Consensus 800 LD~~~~~~i~~~l~~-l~~~g~tvi~~~H~~~ 830 (1218)
||..-+.++.+.+-. +...|..+|.+|||..
T Consensus 165 LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 165 LDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 999999999987654 4556999999999864
No 352
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.4e-31 Score=282.68 Aligned_cols=190 Identities=25% Similarity=0.357 Sum_probs=158.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.+|++..++..... .......+++||||+|++||+++|+|+||||||||-|+|.|+.+| ++|+|.++|++
T Consensus 4 ll~v~~l~k~f~~~~~~-----~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p--t~G~i~f~g~~ 76 (268)
T COG4608 4 LLEVKNLKKYFPVGKGF-----GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP--TSGEILFEGKD 76 (268)
T ss_pred eEEEeccEEEEeccccc-----CcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC--CCceEEEcCcc
Confidence 46888998888754221 111135799999999999999999999999999999999999887 48999999987
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGe 774 (1218)
+.... .++..+++.++++.+|+.. ..++. +++|||||
T Consensus 77 i~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ry-----PhelSGGQ 114 (268)
T COG4608 77 ITKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYRY-----PHELSGGQ 114 (268)
T ss_pred hhhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcC-----CcccCchh
Confidence 53211 2345567889999999764 33332 36899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||+.|||||+.+|+++++|||||+||...+.+++++|+++.++ |.|.++++||.+ -+-..+|++.+|. .|+++..|
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy-~G~iVE~g 192 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMY-LGKIVEIG 192 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEe-cCceeEec
Confidence 99999999999999999999999999999999999999999866 999999999986 4566789999998 59999999
Q ss_pred CCC
Q 000937 854 PLG 856 (1218)
Q Consensus 854 ~~~ 856 (1218)
+.+
T Consensus 193 ~~~ 195 (268)
T COG4608 193 PTE 195 (268)
T ss_pred CHH
Confidence 864
No 353
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.97 E-value=2e-31 Score=355.39 Aligned_cols=213 Identities=24% Similarity=0.377 Sum_probs=170.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC-CE
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVN-GY 694 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~-g~ 694 (1218)
.++++|+++.++.. +++++|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|.+| |.
T Consensus 382 ~I~~~nVsf~Y~~~-----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~i~~g~ 448 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR-----------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT--EGDIIINDSH 448 (1466)
T ss_pred cEEEEEEEEEcCCC-----------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC--CCeEEEeCCc
Confidence 68999999998531 1246999999999999999999999999999999999998874 8999995 66
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhcc---------CC-----C----------------------
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRL---------AP-----Q---------------------- 735 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~---------~~-----~---------------------- 735 (1218)
++.. ..+++.+|||+|++.+++ .|++||+.++..... .. .
T Consensus 449 ~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1466)
T PTZ00265 449 NLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527 (1466)
T ss_pred chhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccc
Confidence 6432 335678999999998887 599999998631000 00 0
Q ss_pred ---C---------ChhhHHHHHHHHHHHcCCCc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000937 736 ---I---------NSKTKADCVNHVLKTIELDG-------IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEP 796 (1218)
Q Consensus 736 ---~---------~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEP 796 (1218)
. ......+.+.++++.+++.+ ..|+.+|.. ...||||||||++|||||+++|+||+||||
T Consensus 528 ~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEp 606 (1466)
T PTZ00265 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEA 606 (1466)
T ss_pred ccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 0 00112244666777666543 346667755 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 797 TTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 797 tsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
||+||+.++..+.+.|+++++ +|+|+|+++|+++ ..+.+|++++|.+
T Consensus 607 TSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls--~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 607 TSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS--TIRYANTIFVLSN 654 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH--HHHhCCEEEEEeC
Confidence 999999999999999999975 5899999999985 4578999999985
No 354
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=4.5e-31 Score=325.82 Aligned_cols=206 Identities=23% Similarity=0.342 Sum_probs=164.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++++++. .+.+|+|+|++|++||+++|+|||||||||||++|+|+.+| .+|+|.+++
T Consensus 4 ~i~~~nls~~~~~-------------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p--~~G~i~~~~-- 66 (552)
T TIGR03719 4 IYTMNRVSKVVPP-------------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAP-- 66 (552)
T ss_pred EEEEeeEEEecCC-------------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecC--
Confidence 4789999998731 24699999999999999999999999999999999999876 489999875
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhh-cc-----------CCCCChh---------------------hHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWL-RL-----------APQINSK---------------------TKA 742 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~~-----------~~~~~~~---------------------~~~ 742 (1218)
...+||++|++.+++++||.||+.++... +. ......+ ...
T Consensus 67 ------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (552)
T TIGR03719 67 ------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLD 140 (552)
T ss_pred ------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhH
Confidence 13589999999889999999999875321 00 0000010 011
Q ss_pred HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 000937 743 DCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTI 822 (1218)
Q Consensus 743 ~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 822 (1218)
.+++++++.+++.. .+.. +..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.||
T Consensus 141 ~~~~~~l~~~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tv 211 (552)
T TIGR03719 141 RKLEIAMDALRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTV 211 (552)
T ss_pred HHHHHHHhhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeE
Confidence 34566777777743 3444 3579999999999999999999999999999999999999999999875 3599
Q ss_pred EEEecCCCHHHHHhhceEEEEecCCEEE-EEcCC
Q 000937 823 VCTIHQPSIDIFESFDELILLKTGGRII-YSGPL 855 (1218)
Q Consensus 823 i~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g~~ 855 (1218)
|++||+++ .+...+|++++|. +|+++ +.|+.
T Consensus 212 IiisHd~~-~~~~~~d~v~~l~-~g~i~~~~g~~ 243 (552)
T TIGR03719 212 VAVTHDRY-FLDNVAGWILELD-RGRGIPWEGNY 243 (552)
T ss_pred EEEeCCHH-HHHhhcCeEEEEE-CCEEEEecCCH
Confidence 99999975 5667789999998 58865 67765
No 355
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.8e-31 Score=294.82 Aligned_cols=192 Identities=20% Similarity=0.237 Sum_probs=157.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE-----------ECCEeCccc--c-c--cceEEE
Q 000937 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIK-----------VNGYPKIQE--T-F--VRVSGY 707 (1218)
Q Consensus 644 ~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~--~-~--~~~~~~ 707 (1218)
.+|+|+| .+++||+++|+|||||||||||++|+|+.+|. +|+|. ++|.+.... . . ...++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~--~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN--LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC--CceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 5899999 59999999999999999999999999998874 89996 778765321 1 1 123689
Q ss_pred eccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000937 708 CEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVAN 787 (1218)
Q Consensus 708 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~ 787 (1218)
++|...+++ .++.+++.+.. . .....+.++++++.+++.+..+..+ ..||||||||++||++|+.+
T Consensus 92 ~~~~~~~~~-~~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIP-KAVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCc-hHHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhC
Confidence 999877777 48888887642 1 1223456788999999987666553 47999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 788 PSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 788 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+.+|+++++. |++.+.|-.
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~~ 222 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGVV 222 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCcceee
Confidence 9999999999999999999999999999877999999999975 4556799999984 567766644
No 356
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.97 E-value=1.4e-32 Score=337.77 Aligned_cols=187 Identities=28% Similarity=0.425 Sum_probs=163.6
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.||+|||||||+|...| ..+|+|++||.|+.+.+ .|+.++||+||+.+|. -||+||+.++.--
T Consensus 504 IvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~p~--------- 573 (709)
T COG2274 504 IVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGNPE--------- 573 (709)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCCCC---------
Confidence 468999999999999999 46899999999999876 4788999999999886 5999999985210
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++|+.++++.|.+|.|+.+++.++ ||.||+. +.+||||||||++|||+++.+|
T Consensus 574 -------------~~~e~i~~A~~~ag~~~fI~~lP~gy-----------~t~v~E~-G~~LSGGQrQrlalARaLl~~P 628 (709)
T COG2274 574 -------------ATDEEIIEAAQLAGAHEFIENLPMGY-----------DTPVGEG-GANLSGGQRQRLALARALLSKP 628 (709)
T ss_pred -------------CCHHHHHHHHHHhCcHHHHHhccccc-----------ccccccC-CCCCCHHHHHHHHHHHHhccCC
Confidence 23467899999999999999877666 9999985 3679999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..|.+.|+++.. |+|+|+.. ||+++++.+|+|+||.+||++++|+++|+++
T Consensus 629 -~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~Ia--HRl~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 629 -KILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIA--HRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred -CEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEE--ccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence 79999999999999999999999999863 56666655 5566999999999999999999999999997
No 357
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=5.3e-31 Score=273.05 Aligned_cols=155 Identities=22% Similarity=0.350 Sum_probs=129.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHH
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEE 722 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 722 (1218)
+.+++++ +++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.+ ++|++|+..
T Consensus 13 ~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~---------i~~~~q~~~--------- 71 (177)
T cd03222 13 FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN--GDNDEWDGIT---------PVYKPQYID--------- 71 (177)
T ss_pred EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CcEEEECCEE---------EEEEcccCC---------
Confidence 5688885 899999999999999999999999999998774 8999999853 678777421
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000937 723 SLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA 802 (1218)
Q Consensus 723 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~ 802 (1218)
||||||||++|||+|+.+|++++|||||+|||+
T Consensus 72 -----------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~ 104 (177)
T cd03222 72 -----------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI 104 (177)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC-CEEEEEecCCCHHHHHhhceEEEEecCCEEEEE--cCCCCCchhhhhhhh
Q 000937 803 RAAAIVMRAVKNVADTG-RTIVCTIHQPSIDIFESFDELILLKTGGRIIYS--GPLGNHSSRVIEYFE 867 (1218)
Q Consensus 803 ~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~--g~~~~~~~~~~~~f~ 867 (1218)
.++..+.+.++++++++ +|||++||+++ .+.+.+|+++++.+ +-.++. |++....+....|+.
T Consensus 105 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (177)
T cd03222 105 EQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEG-EPGVYGIASQPKGTREGINRFLR 170 (177)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcC-CCccceeccCCcchhHHHHHHHH
Confidence 99999999999997775 99999999974 45667999999975 444443 666544444445554
No 358
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3.6e-31 Score=266.31 Aligned_cols=205 Identities=23% Similarity=0.385 Sum_probs=165.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccc---cceEEEeccCCC--CC
Q 000937 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETF---VRVSGYCEQTDI--HS 715 (1218)
Q Consensus 641 ~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~---~~~~~~v~q~~~--~~ 715 (1218)
..+++|+++|++|..|+++-|+|.||||||||+|+|+|...+ ++|+|.++|.++++... ...++-|+|++. ..
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~--t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP--TSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc--CCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 457899999999999999999999999999999999998877 48999999999765322 234677899875 58
Q ss_pred CCCCHHHHHHHHHhhccCCCCC---hhhHHHHHHHHHHHc--CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 000937 716 PHITIEESLFFSAWLRLAPQIN---SKTKADCVNHVLKTI--ELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSI 790 (1218)
Q Consensus 716 ~~lTv~e~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~l--~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~l 790 (1218)
+.+|+.||+..+..-...+... ...+.+...+-++.+ ||++..++.+| -|||||||-++++.|-++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 9999999998865421111111 122333334444444 56677777766 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcC
Q 000937 791 IFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854 (1218)
Q Consensus 791 lllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 854 (1218)
|+|||-|++|||.++..+++.-.++.++ +.|.+++||.+. +...+-+|.++|+ +|+|+.+-.
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh-~G~IvlDv~ 232 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLH-SGKIVLDVT 232 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEe-CCeEEEEcc
Confidence 9999999999999999999999998755 789999999886 5678889999997 699997744
No 359
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=8.2e-32 Score=272.92 Aligned_cols=185 Identities=25% Similarity=0.335 Sum_probs=151.0
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCC----ccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEE----FVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~----~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
+.|++|||||||.+-..+ ..+|+|.++|.++.. ...|+.+|+|.|+-.|||.+||-||+..|-..-.
T Consensus 33 iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~------ 106 (240)
T COG1126 33 IIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVK------ 106 (240)
T ss_pred EECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHc------
Confidence 579999999999998777 468999999976642 1357789999999999999999999999753210
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
.++++|-+ ....++|+.+||.+.+|.+ ...|||||||||+|||+|..+
T Consensus 107 ---~~~k~eA~------------------------~~A~~lL~~VGL~~ka~~y-----P~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 107 ---KLSKAEAR------------------------EKALELLEKVGLADKADAY-----PAQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred ---CCCHHHHH------------------------HHHHHHHHHcCchhhhhhC-----ccccCcHHHHHHHHHHHHcCC
Confidence 11111111 1134679999999999965 467999999999999999998
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
| +|+++|||||+|||....+|.+.++++|+ .|.|.||..|- ..=.-+-+|||+.|++|++++.|++++..
T Consensus 155 P-~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHE-M~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 155 P-KVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHE-MGFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred C-CEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEech-hHHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 8 89999999999999999999999999997 57888887663 33445669999999999999999888665
No 360
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=284.32 Aligned_cols=225 Identities=22% Similarity=0.316 Sum_probs=185.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
-+..+|++..+... .+..+++++|||.+++||.+||+|+||||||-..+.+.|+.+.. ..+|+|.++
T Consensus 6 lL~v~nLsV~f~~~----------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~ 75 (534)
T COG4172 6 LLSIRNLSVAFHQE----------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFD 75 (534)
T ss_pred ceeeeccEEEEecC----------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEc
Confidence 47889999888643 24578999999999999999999999999999999999976542 247999999
Q ss_pred CEeCc---cccc----cceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcccccccc
Q 000937 693 GYPKI---QETF----VRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVG 763 (1218)
Q Consensus 693 g~~~~---~~~~----~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 763 (1218)
|.+.- +... -..|+.++|++. +.|-.|+.+-+.-..++. ...+.+..++++.++++..|+.+-...+-.
T Consensus 76 G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~ 153 (534)
T COG4172 76 GEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDA 153 (534)
T ss_pred ChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhh
Confidence 99842 2222 246899999974 678888887776554443 345566777888899999999877666655
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
.| .+|||||||||.||+||+++|++|+.||||++||...+.+|+++|++|.++ |..++++|||++. +-+.+|++.+
T Consensus 154 yP--HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADrV~V 230 (534)
T COG4172 154 YP--HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVYV 230 (534)
T ss_pred CC--cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhhEEE
Confidence 44 689999999999999999999999999999999999999999999999765 9999999999863 5566799999
Q ss_pred EecCCEEEEEcCCC
Q 000937 843 LKTGGRIIYSGPLG 856 (1218)
Q Consensus 843 l~~~G~~~~~g~~~ 856 (1218)
|. .|++++.|+.+
T Consensus 231 M~-~G~ivE~~~t~ 243 (534)
T COG4172 231 MQ-HGEIVETGTTE 243 (534)
T ss_pred Ee-ccEEeecCcHH
Confidence 98 59999999864
No 361
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-31 Score=294.65 Aligned_cols=215 Identities=26% Similarity=0.430 Sum_probs=178.7
Q ss_pred CceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC
Q 000937 613 QPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVN 692 (1218)
Q Consensus 613 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~ 692 (1218)
.+..+.|.++++.++ +++++|+++|+.+++|+.+|++||||+||||++++|-..+++. +|.|.+|
T Consensus 259 ~~g~v~F~~V~F~y~-------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~--sG~I~id 323 (497)
T COG5265 259 RLGAVAFINVSFAYD-------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITID 323 (497)
T ss_pred ccceEEEEEEEeecc-------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc--CceEEEc
Confidence 345689999999885 3578999999999999999999999999999999999988864 8999999
Q ss_pred CEeCc---cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHH-----HHHHHHHcCCCccccccccC
Q 000937 693 GYPKI---QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADC-----VNHVLKTIELDGIKESLVGI 764 (1218)
Q Consensus 693 g~~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~~ 764 (1218)
|+++. ....++.+|.|||+..++. -|...|+.|+. +..+.++..+. +.+.++ .+.+..++.+|.
T Consensus 324 ~qdir~vtq~slR~aIg~VPQDtvLFN-Dti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vge 395 (497)
T COG5265 324 GQDIRDVTQQSLRRAIGIVPQDTVLFN-DTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGE 395 (497)
T ss_pred chhHHHhHHHHHHHHhCcCcccceehh-hhHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHH--hCchhhhcccch
Confidence 99854 3456788999999888765 58889988752 22333333222 222222 456678899998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+.+ |||||||||+|||+++.+|+||+|||.||+||..+.+.+...|++++ .|+|.+++.|+++ ..-.+|++++|+
T Consensus 396 rglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls--ti~~adeiivl~ 471 (497)
T COG5265 396 RGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS--TIIDADEIIVLD 471 (497)
T ss_pred heee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh--hccCCceEEEee
Confidence 7764 99999999999999999999999999999999999999999999986 5899999999986 356789999998
Q ss_pred cCCEEEEEcCC
Q 000937 845 TGGRIIYSGPL 855 (1218)
Q Consensus 845 ~~G~~~~~g~~ 855 (1218)
+|++++.|+-
T Consensus 472 -~g~i~erg~h 481 (497)
T COG5265 472 -NGRIVERGTH 481 (497)
T ss_pred -CCEEEecCcH
Confidence 5999999985
No 362
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.3e-30 Score=269.98 Aligned_cols=154 Identities=23% Similarity=0.333 Sum_probs=127.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHH
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIE 721 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 721 (1218)
.+++|+|+|+++++||+++|+||||||||||||+|.+ .+|++.++|.... ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~~--~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLPK--FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcccc--cccccEEEEhH-----------
Confidence 3579999999999999999999999999999999963 2789999886321 11233677766
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC--CcEEEEeCCCC
Q 000937 722 ESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGIPGVSGLSTEQRKRLTIGVELVAN--PSIIFMDEPTT 798 (1218)
Q Consensus 722 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGerqRv~ia~~L~~~--p~llllDEPts 798 (1218)
.++++.+++... .+.. ++.||||||||++||++|+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 134566777642 4443 357999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 799 GLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 799 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
|||+.++..+.+.|++++++|+|||++||+++ ..+.+|++++|.+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~--~~~~~d~i~~l~~ 163 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD--VLSSADWIIDFGP 163 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEECC
Confidence 99999999999999999877999999999975 3578999999963
No 363
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=1.6e-30 Score=262.43 Aligned_cols=143 Identities=30% Similarity=0.454 Sum_probs=127.0
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.+. +.++++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~~~--- 62 (144)
T cd03221 2 ELENLSKTYG--------------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGST--- 62 (144)
T ss_pred EEEEEEEEEC--------------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCe---
Confidence 5778887663 23699999999999999999999999999999999999876 4899999984
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000937 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKR 777 (1218)
Q Consensus 698 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqR 777 (1218)
+.++|++| ||+||+||
T Consensus 63 -----~~i~~~~~-----------------------------------------------------------lS~G~~~r 78 (144)
T cd03221 63 -----VKIGYFEQ-----------------------------------------------------------LSGGEKMR 78 (144)
T ss_pred -----EEEEEEcc-----------------------------------------------------------CCHHHHHH
Confidence 45889888 89999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 778 LTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 778 v~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
++|||+|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|+++|+++ ++.+.+|+++++.+ |+
T Consensus 79 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~-g~ 144 (144)
T cd03221 79 LALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELED-GK 144 (144)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeC-CC
Confidence 99999999999999999999999999999999999986 479999999975 56677899999974 53
No 364
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.97 E-value=1.4e-30 Score=325.70 Aligned_cols=201 Identities=16% Similarity=0.261 Sum_probs=160.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.+++
T Consensus 451 ~i~~~nv~~~~~~-------------~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~--~~G~i~~~~-- 513 (659)
T TIGR00954 451 GIKFENIPLVTPN-------------GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV--YGGRLTKPA-- 513 (659)
T ss_pred eEEEEeeEEECCC-------------CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEeecC--
Confidence 5899999997631 23699999999999999999999999999999999998776 379998764
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccC----CCCCCCC
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI----PGVSGLS 771 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~----~~~~~LS 771 (1218)
++.++|++|++.+++. |++||+.++....... .....++.++++++.+++.+..++..|. .....||
T Consensus 514 ------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LS 584 (659)
T TIGR00954 514 ------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLS 584 (659)
T ss_pred ------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCC
Confidence 3568999999988776 9999998753211000 0111234567888889987655442210 0135799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
||||||++|||+|+++|++++|||||+|||+.++..+.+.+++ .|+|+|+++|+++ ..+.+|+++++..+|
T Consensus 585 gGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~~g 655 (659)
T TIGR00954 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDGRG 655 (659)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999998876 3899999999975 468899999997444
No 365
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9e-32 Score=305.07 Aligned_cols=187 Identities=21% Similarity=0.319 Sum_probs=159.9
Q ss_pred CCCCCCCCcchhhcccce--eEEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTG--LVTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g--~~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
..|++|||||+|.+..=. ..+|+|++||.++++.+ .|+.+||||||..+|.. ||-+|+.|..-
T Consensus 383 IvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~----------- 450 (591)
T KOG0057|consen 383 IVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP----------- 450 (591)
T ss_pred EECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC-----------
Confidence 358999999999876554 48999999999999765 47889999999999976 99999999632
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
. +.++|+.++||.+..|+.+.++ ++..+|.||+.+ +-||||||||||+||+++++|
T Consensus 451 -s----------as~eeV~e~~k~a~~hd~i~~l-----------~~GY~T~VGerG-~~LSGGekQrvslaRa~lKda- 506 (591)
T KOG0057|consen 451 -S----------ASDEEVVEACKRAGLHDVISRL-----------PDGYQTLVGERG-LMLSGGEKQRVSLARAFLKDA- 506 (591)
T ss_pred -C----------cCHHHHHHHHHHcCcHHHHHhc-----------cccchhhHhhcc-cccccchHHHHHHHHHHhcCC-
Confidence 1 1235688889999998877765 455599999842 339999999999999999998
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|+++|||||.||+.|+.++++.+.+.. .++|+|+..|.+ ++...||+|++|++|++.+.|+|+|++.
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 5999999999999999999999999843 589999998665 4999999999999999999999999997
No 366
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=1.6e-29 Score=324.05 Aligned_cols=216 Identities=25% Similarity=0.391 Sum_probs=188.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+..++++..+.. .+.+++++|+.|++||+.+++|||||||||++|+|+|..++ .+|++.++|.+
T Consensus 564 ~~~~~~L~k~y~~-------------~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~--t~G~a~i~g~~ 628 (885)
T KOG0059|consen 564 ALVLNNLSKVYGG-------------KDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP--TSGEALIKGHD 628 (885)
T ss_pred eEEEcceeeeecc-------------hhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC--CcceEEEecCc
Confidence 4566777766532 11299999999999999999999999999999999999887 48999999988
Q ss_pred Ccc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+.. ...++.+||+||+|.+++.+|.+|++.+.++++.- .....++.++.+++.++|.+..|+.++ .+|
T Consensus 629 i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~---~~~di~~~v~~ll~~~~L~~~~~~~~~-----~yS 700 (885)
T KOG0059|consen 629 ITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGL---PRSDIGSAIEKLLRLVGLGPYANKQVR-----TYS 700 (885)
T ss_pred cccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCC---ChhHHHHHHHHHHHHcCChhhhccchh-----hCC
Confidence 643 22567899999999999999999999999998753 334455668999999999999998865 799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
||+|||+++|.||+.+|++++|||||+|+||.+++.++++++++.++|+.||+|||.++ |...+|||+.+|. +|++..
T Consensus 701 gG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv-~G~l~c 778 (885)
T KOG0059|consen 701 GGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMV-IGQLRC 778 (885)
T ss_pred CcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheee-cCeeEE
Confidence 99999999999999999999999999999999999999999999988889999999875 5667899999998 599999
Q ss_pred EcCCC
Q 000937 852 SGPLG 856 (1218)
Q Consensus 852 ~g~~~ 856 (1218)
-|++.
T Consensus 779 iGs~q 783 (885)
T KOG0059|consen 779 IGSPQ 783 (885)
T ss_pred ecChH
Confidence 99973
No 367
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=8.3e-30 Score=265.11 Aligned_cols=229 Identities=22% Similarity=0.307 Sum_probs=188.7
Q ss_pred EEEEEeEEEEEecCchh----hhh----c--cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCce
Q 000937 616 TMVFQDLQYSIDTPLEM----RRR----E--CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCF 685 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~----~~~----~--~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~ 685 (1218)
.+.++|++..++..... ... . ........+|+||||++++||.+||+|+||||||||||+|+|.++|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 46778888777655321 000 0 11344578999999999999999999999999999999999999884
Q ss_pred eeEEEECCEeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 686 KGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 686 ~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
+|+|.++|+-...-. =.--+.|.+|.+||+.+.+.+. ..+.++.++.++++++.-+|.+..|.++
T Consensus 81 ~G~v~v~G~v~~li~---------lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 SGKVKVTGKVAPLIE---------LGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred CceEEEcceEehhhh---------cccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 899999996421110 1123457899999999876543 3456778889999999999999999886
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+.+|.||+-|++.|.+...+|++|++||-.+--|+.=+++-.+.++++.++++|||+++|+++ .+-+.||+.++|.
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~- 221 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLE- 221 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEe-
Confidence 589999999999999999999999999999999999999999999999888899999999986 6889999999998
Q ss_pred CCEEEEEcCCCCCchhhhhhhhcC
Q 000937 846 GGRIIYSGPLGNHSSRVIEYFEGI 869 (1218)
Q Consensus 846 ~G~~~~~g~~~~~~~~~~~~f~~~ 869 (1218)
.|++.+.|.+ +++.++|...
T Consensus 222 ~G~i~~~G~~----~~vi~~Y~~~ 241 (249)
T COG1134 222 HGQIRMEGSP----EEVIPAYEED 241 (249)
T ss_pred CCEEEEcCCH----HHHHHHHHHh
Confidence 5999999998 5677777653
No 368
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.6e-31 Score=259.48 Aligned_cols=177 Identities=28% Similarity=0.385 Sum_probs=155.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc--cccceEEEeccCCCCCCCC
Q 000937 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE--TFVRVSGYCEQTDIHSPHI 718 (1218)
Q Consensus 641 ~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~l 718 (1218)
+...++.++||++.+||.+-|.|||||||||||++|+|+..|. +|+|+++|.++... .+++..-|+-..+-+=+.+
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~--~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eL 90 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD--AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTEL 90 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC--CCeEEecCCCCccchhhHHHHHHHhhccccccchh
Confidence 3458999999999999999999999999999999999998874 89999999886532 2445677888888888999
Q ss_pred CHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000937 719 TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798 (1218)
Q Consensus 719 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPts 798 (1218)
||.|||.|-...... ...+.+.++++.+||.+..|.+++ .||-||||||+|||-.+..+++-+||||++
T Consensus 91 Ta~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLDEP~t 159 (209)
T COG4133 91 TALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFT 159 (209)
T ss_pred hHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeecCccc
Confidence 999999997654422 123457889999999999999875 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Q 000937 799 GLDARAAAIVMRAVKNVADTGRTIVCTIHQPS 830 (1218)
Q Consensus 799 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 830 (1218)
+||......+-.++..-+.+|-.||.+||||.
T Consensus 160 aLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 160 ALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 99999999999999998888999999999985
No 369
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-29 Score=314.75 Aligned_cols=204 Identities=24% Similarity=0.313 Sum_probs=157.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++++. .+.+|+|+||+|++||++||+||||||||||||+|+|..+|+ +|+|.++|..
T Consensus 2 i~i~nls~~~g--------------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd--~G~I~~~~~~- 64 (638)
T PRK10636 2 IVFSSLQIRRG--------------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD--GGSYTFPGNW- 64 (638)
T ss_pred EEEEEEEEEeC--------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCCC-
Confidence 67899998883 357999999999999999999999999999999999987764 8999998742
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHHH-----------------------hhcc-CCCCChhhHHHHHHHHHHHc
Q 000937 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSA-----------------------WLRL-APQINSKTKADCVNHVLKTI 752 (1218)
Q Consensus 697 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-----------------------~~~~-~~~~~~~~~~~~~~~~l~~l 752 (1218)
.++|++|+.... ..|+.+.+.-.. .+.. ...........+++++++.+
T Consensus 65 -------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 136 (638)
T PRK10636 65 -------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL 136 (638)
T ss_pred -------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Confidence 368888864332 245544432100 0000 00000112245678899999
Q ss_pred CCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCH
Q 000937 753 ELD-GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSI 831 (1218)
Q Consensus 753 ~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 831 (1218)
|+. +..+..+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||..
T Consensus 137 gl~~~~~~~~~-----~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~- 207 (638)
T PRK10636 137 GFSNEQLERPV-----SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD- 207 (638)
T ss_pred CCCchhhcCch-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-
Confidence 996 4556654 479999999999999999999999999999999999999999998875 569999999975
Q ss_pred HHHHhhceEEEEecCCEEE-EEcCC
Q 000937 832 DIFESFDELILLKTGGRII-YSGPL 855 (1218)
Q Consensus 832 ~~~~~~d~~~~l~~~G~~~-~~g~~ 855 (1218)
.+...+|++++|. +|++. |.|+.
T Consensus 208 ~l~~~~d~i~~L~-~G~i~~~~g~~ 231 (638)
T PRK10636 208 FLDPIVDKIIHIE-QQSLFEYTGNY 231 (638)
T ss_pred HHHHhcCEEEEEe-CCEEEEecCCH
Confidence 5667899999997 58885 55654
No 370
>PLN03232 ABC transporter C family member; Provisional
Probab=99.96 E-value=1.9e-29 Score=340.22 Aligned_cols=204 Identities=23% Similarity=0.363 Sum_probs=165.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++.. .++++|+|+|+++++||.++|+||||||||||+++|.|..++. +|.+.
T Consensus 614 ~I~~~~vsF~y~~~-----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~--~G~i~----- 675 (1495)
T PLN03232 614 AISIKNGYFSWDSK-----------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA--ETSSV----- 675 (1495)
T ss_pred cEEEEeeEEEcCCC-----------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc--CCCEE-----
Confidence 58999999998531 1246899999999999999999999999999999999988763 66552
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCC-------CccccccccCCCCC
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-------DGIKESLVGIPGVS 768 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~~~ 768 (1218)
..++.++||+|++.++. -|++|||.|+.. .+ +++.+++++..++ .+-.++.+|..|.
T Consensus 676 ----~~~~~Iayv~Q~p~Lf~-gTIreNI~fg~~------~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~- 739 (1495)
T PLN03232 676 ----VIRGSVAYVPQVSWIFN-ATVRENILFGSD------FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGV- 739 (1495)
T ss_pred ----EecCcEEEEcCcccccc-ccHHHHhhcCCc------cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCc-
Confidence 23567999999998875 699999998621 11 2334555555544 3345688887764
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA-VKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.||||||||++||||+.++|+|++||||||+||+.+++++.+. ++.. .+|+|+|++||+++ ....+|++++|. +|
T Consensus 740 ~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~-~G 815 (1495)
T PLN03232 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVS-EG 815 (1495)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEe-CC
Confidence 6999999999999999999999999999999999999988765 5544 36899999999974 578899999997 69
Q ss_pred EEEEEcCCCC
Q 000937 848 RIIYSGPLGN 857 (1218)
Q Consensus 848 ~~~~~g~~~~ 857 (1218)
+++..|+.++
T Consensus 816 ~i~~~Gt~~e 825 (1495)
T PLN03232 816 MIKEEGTFAE 825 (1495)
T ss_pred EEEEecCHHH
Confidence 9999998653
No 371
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=2.2e-29 Score=245.71 Aligned_cols=224 Identities=21% Similarity=0.294 Sum_probs=181.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++.+|++.++......- .+....+++.|||+++.|+.+||+|.||||||||.|+|+|..+| ++|+|++||++.
T Consensus 5 LeV~nLsKtF~~~~~lf-----~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P--TsG~il~n~~~L 77 (267)
T COG4167 5 LEVRNLSKTFRYRTGLF-----RRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGEILINDHPL 77 (267)
T ss_pred hhhhhhhhhhhhhhhhh-----hhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC--CCceEEECCccc
Confidence 35566666554332221 11235689999999999999999999999999999999999887 499999999986
Q ss_pred ccc---cccceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCC
Q 000937 697 IQE---TFVRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~~---~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~L 770 (1218)
... ...+.+-.++|++. +.|.+.+.+-|.... ++..+...+.+.+++.+.++..||.. .++.. +..|
T Consensus 78 ~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~-----~~~l 150 (267)
T COG4167 78 HFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHANYY-----PHML 150 (267)
T ss_pred cccchHhhhhheeeeecCCccccChhhhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCccccccc-----hhhc
Confidence 432 22366889999874 668888888777654 44455667778888999999999863 33433 3579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|.||||||++||||+.+|+|++.||...+||...+.++.+++-++.++ |.+-|.++.+.. -+-...|++++|. +|++
T Consensus 151 a~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~-EG~v 228 (267)
T COG4167 151 APGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMH-EGEV 228 (267)
T ss_pred CchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEe-cCce
Confidence 999999999999999999999999999999999999999999999765 999999999876 3667789999998 5999
Q ss_pred EEEcCCC
Q 000937 850 IYSGPLG 856 (1218)
Q Consensus 850 ~~~g~~~ 856 (1218)
++.|.+.
T Consensus 229 vE~G~t~ 235 (267)
T COG4167 229 VERGSTA 235 (267)
T ss_pred eecCChh
Confidence 9999874
No 372
>PLN03130 ABC transporter C family member; Provisional
Probab=99.96 E-value=2.3e-29 Score=338.88 Aligned_cols=203 Identities=21% Similarity=0.367 Sum_probs=167.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCcee-eEEEECCE
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFK-GEIKVNGY 694 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~-G~i~~~g~ 694 (1218)
.++++|+++.++.. .++.+|+|+|+++++||.++|+||||||||||+++|.|..++ .+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~-----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~GG~I~l--- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSK-----------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP--RSDASVVI--- 677 (1622)
T ss_pred ceEEEeeEEEccCC-----------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc--CCCceEEE---
Confidence 58999999998531 124689999999999999999999999999999999998876 47 89875
Q ss_pred eCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 000937 695 PKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGIPGV 767 (1218)
Q Consensus 695 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~~ 767 (1218)
++.++||+|++.++. .|++|||.|+.. . .+++.+++++..+|. +-.++.+|..+
T Consensus 678 -------~~~Iayv~Q~p~Lfn-gTIreNI~fg~~------~----d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G- 738 (1622)
T PLN03130 678 -------RGTVAYVPQVSWIFN-ATVRDNILFGSP------F----DPERYERAIDVTALQHDLDLLPGGDLTEIGERG- 738 (1622)
T ss_pred -------cCeEEEEcCccccCC-CCHHHHHhCCCc------c----cHHHHHHHHHHhCcHHHHHhCCCcccccccCCC-
Confidence 346899999998875 699999998621 1 134455666665553 33577888765
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR-AVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
..||||||||++||||+.++|+|++||||||+||+.+++++.+ .++.+. +|+|+|++||++ +....+|++++|. +
T Consensus 739 ~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l--~~l~~aD~Ii~L~-~ 814 (1622)
T PLN03130 739 VNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQL--HFLSQVDRIILVH-E 814 (1622)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCH--hHHHhCCEEEEEe-C
Confidence 4699999999999999999999999999999999999988864 566553 589999999997 4578899999998 6
Q ss_pred CEEEEEcCCCC
Q 000937 847 GRIIYSGPLGN 857 (1218)
Q Consensus 847 G~~~~~g~~~~ 857 (1218)
|+++..|+.++
T Consensus 815 G~i~e~Gt~~e 825 (1622)
T PLN03130 815 GMIKEEGTYEE 825 (1622)
T ss_pred CEEEEeCCHHH
Confidence 99999998654
No 373
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.96 E-value=2.3e-30 Score=323.62 Aligned_cols=187 Identities=24% Similarity=0.303 Sum_probs=159.1
Q ss_pred CCCCCCCCcchhhcccce--eEEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTG--LVTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g--~~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
+.|++|||||||.+...| ..+|+|++||.|+++.+ +|+.++||+|++.+|+. ||||||.|+..
T Consensus 381 IvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~----------- 448 (588)
T PRK11174 381 LVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP----------- 448 (588)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC-----------
Confidence 569999999999999988 45899999999998764 46789999999999975 99999999521
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
+ .+++|++++++.+.+++++.++ ++..||.||+. ...||||||||++|||+++.+|
T Consensus 449 -~----------~~~eei~~al~~a~l~~~i~~l-----------p~G~dT~vge~-G~~LSGGQrQRialARAll~~~- 504 (588)
T PRK11174 449 -D----------ASDEQLQQALENAWVSEFLPLL-----------PQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPC- 504 (588)
T ss_pred -C----------CCHHHHHHHHHHhCHHHHHHhc-----------ccccccccccC-CCCCCHHHHHHHHHHHHHhcCC-
Confidence 0 1224678888888888777654 44559999986 3569999999999999999988
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..|.+.|+++. .++|+|+..|++ ++.+.+|+|++|.+|++++.|+|+++++
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 7999999999999999999999999875 367777776776 6889999999999999999999999985
No 374
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=5.6e-29 Score=256.24 Aligned_cols=141 Identities=36% Similarity=0.597 Sum_probs=124.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---ccccceEEEeccCCCCCCCCC
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHIT 719 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 719 (1218)
+.+++++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~q--------- 80 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKLPLEELRRRIGYVPQ--------- 80 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccCCHHHHHhceEEEee---------
Confidence 3699999999999999999999999999999999998876 48999999987532 123456788877
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000937 720 IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799 (1218)
Q Consensus 720 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsg 799 (1218)
||+||+||++||++++.+|++++|||||+|
T Consensus 81 --------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 81 --------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG 110 (157)
T ss_pred --------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 800 LDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 800 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
||..++..+.+.++++.+.++|+++++|+++ ++...+|+++++.+
T Consensus 111 lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~ 155 (157)
T cd00267 111 LDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKD 155 (157)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 9999999999999998777899999999975 45555799999974
No 375
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.96 E-value=9.8e-31 Score=288.60 Aligned_cols=187 Identities=23% Similarity=0.352 Sum_probs=159.2
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
|.|++|+|||||.+..=- .-+|+|++||.|++... .|..+|.||||.++|.. |+--|++||-
T Consensus 569 lVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak----------- 636 (790)
T KOG0056|consen 569 LVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAK----------- 636 (790)
T ss_pred EECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecC-----------
Confidence 679999999999986653 56899999999998643 46778999999999975 9999999961
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
| + ..++|+.+++|+|..|+-+ +++++..+|+||+.+.| |||||||||+|||.+++.|
T Consensus 637 ~-~----------AsneevyaAAkAA~IHdrI-----------l~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 637 P-S----------ASNEEVYAAAKAAQIHDRI-----------LQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAP 693 (790)
T ss_pred C-C----------CChHHHHHHHHHhhHHHHH-----------hcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCC
Confidence 0 1 2346788889988777544 55666669999984332 8999999999999999998
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++|||+||+||..++++|+.+|.+++. +++|||++ ||.+++-++|.|+++++|++++.|.|+|++.
T Consensus 694 -~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvA---HRLSTivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 694 -SIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVA---HRLSTIVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred -cEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEe---eeehheecccEEEEEeCCeEeecCcHHHHHh
Confidence 79999999999999999999999999985 56777777 7888999999999999999999999999995
No 376
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=1.1e-28 Score=308.63 Aligned_cols=204 Identities=24% Similarity=0.316 Sum_probs=155.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++++. .+.+|+|+||+|++||+++|+|||||||||||++|+|..+|+ +|+|.++|..
T Consensus 3 ~l~i~~ls~~~~--------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~--~G~I~~~~~~ 66 (635)
T PRK11147 3 LISIHGAWLSFS--------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD--DGRIIYEQDL 66 (635)
T ss_pred EEEEeeEEEEeC--------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CeEEEeCCCC
Confidence 378899998883 246999999999999999999999999999999999987764 8999998731
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHH------------------------------Hhhcc-CCCCChhhHHHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFS------------------------------AWLRL-APQINSKTKADC 744 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~------------------------------~~~~~-~~~~~~~~~~~~ 744 (1218)
.++|++|.+......+|.+++..+ ..+.. ...........+
T Consensus 67 --------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 138 (635)
T PRK11147 67 --------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENR 138 (635)
T ss_pred --------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 246666654333334555543211 00000 000001122456
Q ss_pred HHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Q 000937 745 VNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVC 824 (1218)
Q Consensus 745 ~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~ 824 (1218)
++++++.+|+.. +.. +.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+
T Consensus 139 ~~~~l~~lgl~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvli 208 (635)
T PRK11147 139 INEVLAQLGLDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIF 208 (635)
T ss_pred HHHHHHhCCCCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEE
Confidence 788899999862 444 3589999999999999999999999999999999999999999999987 359999
Q ss_pred EecCCCHHHHHhhceEEEEecCCEEE-EEcCC
Q 000937 825 TIHQPSIDIFESFDELILLKTGGRII-YSGPL 855 (1218)
Q Consensus 825 ~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g~~ 855 (1218)
+|||+. .+...+|+++.|. +|+++ +.|+.
T Consensus 209 vsHd~~-~l~~~~d~i~~L~-~G~i~~~~g~~ 238 (635)
T PRK11147 209 ISHDRS-FIRNMATRIVDLD-RGKLVSYPGNY 238 (635)
T ss_pred EeCCHH-HHHHhcCeEEEEE-CCEEEEecCCH
Confidence 999975 4667799999998 58887 45654
No 377
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.96 E-value=2.7e-30 Score=321.05 Aligned_cols=187 Identities=29% Similarity=0.419 Sum_probs=159.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.||+|||||||.+...+. .+|+|++||.|+++.+ +|+.++||+|+..+|. -||+||+.|+..
T Consensus 360 iVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~---------- 428 (567)
T COG1132 360 IVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP---------- 428 (567)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC----------
Confidence 4699999999999999983 4799999999999765 4678899999999998 699999999621
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
+ .+++|+++++|++++|+++.+++ +..||.||+. +..||||||||++|||+++++|
T Consensus 429 --~----------at~eei~~a~k~a~~~d~I~~lp-----------~g~dt~vge~-G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 429 --D----------ATDEEIEEALKLANAHEFIANLP-----------DGYDTIVGER-GVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred --C----------CCHHHHHHHHHHhChHHHHHhCc-----------ccccceecCC-CccCCHHHHHHHHHHHHHhcCC
Confidence 0 12357888999999988887654 4559999953 4569999999999999999998
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..|++.++++.+ ++|+++..|++ +++..+|+|+||++|++++.|+|++++.
T Consensus 485 -~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRl--sti~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 485 -PILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRL--STIKNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred -CEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccH--hHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 69999999999999999999999998763 45655555554 6888899999999999999999999996
No 378
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2e-29 Score=244.06 Aligned_cols=209 Identities=27% Similarity=0.404 Sum_probs=155.6
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe-
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP- 695 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~- 695 (1218)
++.++++..|. ...-.+||||.+.|||+.+|+|+|||||||||++|+++..|+ .|+|.+.-.+
T Consensus 7 L~V~~lsk~Yg--------------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~--~G~v~Y~~r~~ 70 (258)
T COG4107 7 LSVSGLSKLYG--------------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDG 70 (258)
T ss_pred eeehhhhhhhC--------------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC--CCeEEEEcCCC
Confidence 56667666552 234588999999999999999999999999999999998874 8999886532
Q ss_pred --C-----cccc----ccceEEEeccCCCCCCCC------CHHHHHH-HHHhhccCCCCChhhHHHHHHHHHHHcCCCcc
Q 000937 696 --K-----IQET----FVRVSGYCEQTDIHSPHI------TIEESLF-FSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757 (1218)
Q Consensus 696 --~-----~~~~----~~~~~~~v~q~~~~~~~l------Tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 757 (1218)
. .+.+ .+...|+|.|++.-=-.+ .+.|-++ .++ | + --..++.+.++++..+++..
T Consensus 71 ~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~--R---H--YG~iR~~a~~WL~~VEI~~~ 143 (258)
T COG4107 71 QPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA--R---H--YGNIRAEAQDWLEEVEIDLD 143 (258)
T ss_pred CchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh--h---h--hhhHHHHHHHHHHhcccCcc
Confidence 1 1111 123479999986432122 2334332 111 1 1 11233446677888777532
Q ss_pred c-cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHH
Q 000937 758 K-ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFE 835 (1218)
Q Consensus 758 ~-~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~ 835 (1218)
. |.. ++..||||+||+.|||.|++.|+++|+||||.|||...+..++++++.+..+ |.+++++|||.. +..
T Consensus 144 RiDD~-----PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~--Var 216 (258)
T COG4107 144 RIDDL-----PRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA--VAR 216 (258)
T ss_pred cccCc-----ccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH--HHH
Confidence 1 221 4689999999999999999999999999999999999999999999999766 999999999864 444
Q ss_pred -hhceEEEEecCCEEEEEcCCC
Q 000937 836 -SFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 836 -~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
+.|+.++|. +|++++.|-.+
T Consensus 217 Lla~rlmvmk-~g~vve~GLTD 237 (258)
T COG4107 217 LLADRLMVMK-QGQVVESGLTD 237 (258)
T ss_pred Hhhhcceeec-CCCEecccccc
Confidence 468888887 69999999654
No 379
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=2.2e-29 Score=308.90 Aligned_cols=181 Identities=22% Similarity=0.259 Sum_probs=150.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE-----------ECCEeCccc-----cccceE
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIK-----------VNGYPKIQE-----TFVRVS 705 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~-----~~~~~~ 705 (1218)
+..+|++++ .+++||+++|+||||||||||||+|+|..+|. +|+|. ++|.++... ..+..+
T Consensus 86 ~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~--~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 162 (590)
T PRK13409 86 NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN--LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKV 162 (590)
T ss_pred CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC--CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcce
Confidence 346899999 99999999999999999999999999988874 89997 899875321 111235
Q ss_pred EEeccCCCCCCC---CCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHH
Q 000937 706 GYCEQTDIHSPH---ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGV 782 (1218)
Q Consensus 706 ~~v~q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~ 782 (1218)
++.+|.....|. .||+|++... ...+.++++++.+++.+..|+.+ .+|||||||||+||+
T Consensus 163 ~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~ia~ 225 (590)
T PRK13409 163 VHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDI-----SELSGGELQRVAIAA 225 (590)
T ss_pred eecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHH
Confidence 666665444443 3999988531 12346788999999988777765 479999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 783 ELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 783 ~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
+|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+...+|+++++.
T Consensus 226 al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~ 285 (590)
T PRK13409 226 ALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAY 285 (590)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 99999999999999999999999999999999988 999999999985 5677889999986
No 380
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=1.4e-29 Score=248.13 Aligned_cols=186 Identities=18% Similarity=0.311 Sum_probs=158.6
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
+.|.+|||||||.-..-| ..+|+|++||.+.+... .+|-++.+.||..+|+.|||+||+.+... | .+..
T Consensus 30 i~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~---P----~LkL 102 (231)
T COG3840 30 ILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS---P----GLKL 102 (231)
T ss_pred EECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC---c----cccc
Confidence 468999999999988888 46899999999998654 35778999999999999999999988532 1 1111
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
. ..+ ...++.++...||..+.+-+-| .|||||||||++||.++... +
T Consensus 103 ~--a~~-------------------------r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~-P 149 (231)
T COG3840 103 N--AEQ-------------------------REKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQ-P 149 (231)
T ss_pred C--HHH-------------------------HHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccC-C
Confidence 1 111 1246788999999999987754 49999999999999999988 4
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
||+||||-|+||+.-+.+....+.+++++++.|+++..|||. ++.+.+|+++++++|+|.++|+.++...
T Consensus 150 ilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 150 ILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred eEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 999999999999999999999999999999999999989876 7889999999999999999999987763
No 381
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.96 E-value=4.2e-28 Score=267.76 Aligned_cols=173 Identities=23% Similarity=0.317 Sum_probs=136.3
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHHHHH
Q 000937 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLF 725 (1218)
Q Consensus 646 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 725 (1218)
|.-=.+++..||+++++||||-||||+.++|+|..+|+ +|+ .. .-.++|-||--.--...||++.+.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 44445788899999999999999999999999998874 665 11 123678888655557789999876
Q ss_pred HHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000937 726 FSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAA 805 (1218)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~ 805 (1218)
-...-+.. ..-...++.+-|.|+.+.|..+ .+|||||.|||+||.+|..++++.+||||++-||.+.+
T Consensus 424 ~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFG-------SSYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhcc-------cchhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 43322111 1123457788899998888876 48999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 806 AIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 806 ~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
..+-+.||++... ++|.+++.||.-+ +--..|++++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999999865 8999999998743 223457777764
No 382
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=2.9e-29 Score=258.93 Aligned_cols=187 Identities=24% Similarity=0.302 Sum_probs=162.6
Q ss_pred CCCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 3 SLNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
.|.|++||||||+.|-... ..+|+|++||.++.+.+ +||.+|||-|+--|||.+||.||+.+--++++-+
T Consensus 31 vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~---- 106 (309)
T COG1125 31 VLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWD---- 106 (309)
T ss_pred EEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCC----
Confidence 3679999999999997776 45799999999999764 5788999999999999999999999987776421
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcc--cccceecCCcCCcCCccccchhhHHHHHh
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDI--CADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~--~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
+++. +.+++++++.+||+. .+| .+.+.|||||+|||-||||+.
T Consensus 107 ------k~~i------------------------~~r~~ELl~lvgL~p~~~~~-----RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 107 ------KERI------------------------KKRADELLDLVGLDPSEYAD-----RYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred ------HHHH------------------------HHHHHHHHHHhCCCHHHHhh-----cCchhcCcchhhHHHHHHHHh
Confidence 1111 124788999999974 455 456789999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
.+| +|+++|||-++|||.++.++++.++++-++-++|||...| -..|.++++|||++|++|+++.+|++++++.
T Consensus 152 adP-~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTH-DidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 152 ADP-PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTH-DIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred cCC-CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEec-CHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 988 6999999999999999999999999999999999999865 7899999999999999999999999999885
No 383
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-29 Score=293.06 Aligned_cols=186 Identities=27% Similarity=0.382 Sum_probs=154.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
|.|++|||||+|.....|. .+|+|++||.+.++.+ +++.++||+|++.+|+. |+|||+.++..-
T Consensus 352 lvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~--------- 421 (559)
T COG4988 352 LVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPD--------- 421 (559)
T ss_pred EECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCCc---------
Confidence 6799999999999999994 6799999999999775 67889999999999985 999999996321
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
..++++.++.+.+...++..+ ++..||.||+. ++||||||+|||++||+++.++
T Consensus 422 -------------~s~e~i~~al~~a~l~~~v~~------------p~GLdt~ige~-G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 422 -------------ASDEEIIAALDQAGLLEFVPK------------PDGLDTVIGEG-GAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred -------------CCHHHHHHHHHHhcHHHhhcC------------CCcccchhccC-CCCCCHHHHHHHHHHHHhcCCC
Confidence 112345555555544444332 45669999985 5889999999999999998876
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+++++||||++||..|+..|++.|.++++ ++|++++- |+.+.....|+|++|++|+++++|.++++.+
T Consensus 476 -~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~it--Hrl~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 476 -SLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVIT--HRLEDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred -CEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEE--cChHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 79999999999999999999999999996 34555544 6677999999999999999999999999975
No 384
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=3.8e-29 Score=263.12 Aligned_cols=174 Identities=26% Similarity=0.370 Sum_probs=146.4
Q ss_pred CCCCCCCCCcchhhcccce---eEEEEEEECCcccCCccc-------cceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000937 3 SLNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVP-------QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVG 72 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~~-------~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~ 72 (1218)
.+.|++|||||||....+| ..+|.|.++|.++...+. ++.+|||.|+-.|+|++||+||+...+..++..
T Consensus 35 aI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~ 114 (226)
T COG1136 35 AIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS 114 (226)
T ss_pred EEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC
Confidence 3579999999999999998 467999999988886542 356899999999999999999999877665421
Q ss_pred CchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCccccc-ceecCCcCCcCCccccchhhHHH
Q 000937 73 SRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICAD-TLVGDAIRRGISGGQKRRLTTGR 151 (1218)
Q Consensus 73 ~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~d-T~VG~~~~rGLSGGeKrRvSIA~ 151 (1218)
.+++ ....+.+++.+||++-.+ ..+ ..|||||||||||||
T Consensus 115 ----------~~~~------------------------~~~~~~l~~~lgl~~~~~~~~p-----~eLSGGqqQRVAIAR 155 (226)
T COG1136 115 ----------AGRR------------------------KRAAEELLEVLGLEDRLLKKKP-----SELSGGQQQRVAIAR 155 (226)
T ss_pred ----------hhHH------------------------HHHHHHHHHhcCChhhhccCCc-----hhcCHHHHHHHHHHH
Confidence 0000 113567899999997776 554 459999999999999
Q ss_pred HHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCc
Q 000937 152 EMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGK 218 (1218)
Q Consensus 152 ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ 218 (1218)
+++.+| +|++.||||..||+.++..|++.+++++++.|+|+|++. |.+++...+||++.|.+|+
T Consensus 156 AL~~~P-~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VT--Hd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 156 ALINNP-KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVT--HDPELAKYADRVIELKDGK 219 (226)
T ss_pred HHhcCC-CeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEc--CCHHHHHhCCEEEEEeCCe
Confidence 998887 899999999999999999999999999988898888886 4566899999999999999
No 385
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.1e-29 Score=279.37 Aligned_cols=187 Identities=26% Similarity=0.371 Sum_probs=164.6
Q ss_pred CCCCCCCCCcchhhccccee---EEEEEEECCcccCCccc-cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 3 SLNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~-~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
.|.|++||||||+.+..-|. .+|+|.+||.++++... +|.+++|.|...|+|.+||+||+.|..++++..
T Consensus 33 vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~------ 106 (338)
T COG3839 33 VLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVP------ 106 (338)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCc------
Confidence 37899999999999999983 67999999999998654 578999999999999999999999998887421
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
+++ + +.+|+++.+.|+|+|-.|.+. +.|||||||||||||+++++|
T Consensus 107 ----k~e----------i--------------~~rV~eva~~L~l~~lL~r~P-----~~LSGGQrQRVAlaRAlVr~P- 152 (338)
T COG3839 107 ----KAE----------I--------------DKRVKEVAKLLGLEHLLNRKP-----LQLSGGQRQRVALARALVRKP- 152 (338)
T ss_pred ----hHH----------H--------------HHHHHHHHHHcCChhHHhcCc-----ccCChhhHHHHHHHHHHhcCC-
Confidence 122 1 124788999999999999764 679999999999999999998
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++||||.|.||+......-..++++-++.+.|+|...| --.|...++|||+||.+|++...|++.++.+
T Consensus 153 ~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTH-Dq~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 153 KVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTH-DQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred CEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcC-CHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 7999999999999999999999999998878888777755 5679999999999999999999999999986
No 386
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.96 E-value=2.7e-28 Score=329.45 Aligned_cols=203 Identities=22% Similarity=0.392 Sum_probs=163.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. ..+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 636 ~i~~~~~~~~~~~------------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g-- 699 (1522)
T TIGR00957 636 SITVHNATFTWAR------------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKG-- 699 (1522)
T ss_pred cEEEEEeEEEcCC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc--CCcEEEECC--
Confidence 5899999998842 124699999999999999999999999999999999998876 489999987
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHc------CC-CccccccccCCCCC
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI------EL-DGIKESLVGIPGVS 768 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l------~l-~~~~~~~~~~~~~~ 768 (1218)
.++||+|++.++ +.|++||+.|+.. ... ++.+++++.. +. .+-.++.+|..+ .
T Consensus 700 --------~i~yv~Q~~~l~-~~Ti~eNI~~g~~------~~~----~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g-~ 759 (1522)
T TIGR00957 700 --------SVAYVPQQAWIQ-NDSLRENILFGKA------LNE----KYYQQVLEACALLPDLEILPSGDRTEIGEKG-V 759 (1522)
T ss_pred --------EEEEEcCCcccc-CCcHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhcCCCCCceecCCC-C
Confidence 389999998765 5799999988521 111 1122333332 22 223355666654 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH--HhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV--ADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l--~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
+||||||||++|||||+.+|++++||||||+||+.+++.+.+.+.+. ..+|+|+|++||+++ ....+|++++|. +
T Consensus 760 ~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~-~ 836 (1522)
T TIGR00957 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMS-G 836 (1522)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEec-C
Confidence 79999999999999999999999999999999999999999998753 235899999999975 456799999997 6
Q ss_pred CEEEEEcCCCC
Q 000937 847 GRIIYSGPLGN 857 (1218)
Q Consensus 847 G~~~~~g~~~~ 857 (1218)
|+++..|+.++
T Consensus 837 G~i~~~g~~~~ 847 (1522)
T TIGR00957 837 GKISEMGSYQE 847 (1522)
T ss_pred CeEEeeCCHHH
Confidence 99999998653
No 387
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.6e-30 Score=280.07 Aligned_cols=184 Identities=24% Similarity=0.434 Sum_probs=160.3
Q ss_pred CCCCCCCcchhhcccce---eEEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 5 NDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 5 ~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
.+.+|+|||||+...=- .-+|.|++||.|+++.. .|+.+|.|||+-+||.. |+..|+.|+-.
T Consensus 295 Vg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~----------- 362 (497)
T COG5265 295 VGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRP----------- 362 (497)
T ss_pred EeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCc-----------
Confidence 47899999999986543 46899999999999764 46788999999999965 99999999621
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCc--CCccccchhhHHHHHhhC
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRG--ISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rG--LSGGeKrRvSIA~ell~~ 156 (1218)
. ..++|+.++++++..|.+++.+++.+ ||.||+ || |||||||||+|||.++++
T Consensus 363 -~----------at~eev~aaa~~aqi~~fi~~lP~gy-----------~t~Vge---rglklSggekqrvaiar~ilk~ 417 (497)
T COG5265 363 -D----------ATAEEVGAAAEAAQIHDFIQSLPEGY-----------DTGVGE---RGLKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred -c----------ccHHHHHHHHHHhhhhHHHHhCchhh-----------hcccch---heeeccCchHHHHHHHHHHhcC
Confidence 1 13357888999999999999988877 999998 55 899999999999999999
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
| +||+|||+||+||+.++.+++.+|+++++ +++|++++ ||.+++-.+|.|+||++|++++.|+|.+++.
T Consensus 418 p-~il~~deatsaldt~te~~iq~~l~~~~~-~rttlvia---hrlsti~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 418 P-PILILDEATSALDTHTEQAIQAALREVSA-GRTTLVIA---HRLSTIIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred C-CEEEEehhhhHhhhhHHHHHHHHHHHHhC-CCeEEEEe---ehhhhccCCceEEEeeCCEEEecCcHHHHHH
Confidence 9 69999999999999999999999999984 55666666 7788999999999999999999999999996
No 388
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.6e-29 Score=287.58 Aligned_cols=186 Identities=26% Similarity=0.347 Sum_probs=158.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+.. .++.++||+|+..+||.+||+||+.|..+.++.
T Consensus 35 llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-------- 106 (356)
T PRK11650 35 LVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGM-------- 106 (356)
T ss_pred EECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCC--------
Confidence 6899999999999999994 5799999999887542 246789999999999999999999998654321
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
++.+. ...++++++.+||++..|..+ +.|||||||||+|||+++.+| +
T Consensus 107 --~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P-~ 154 (356)
T PRK11650 107 --PKAEI------------------------EERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREP-A 154 (356)
T ss_pred --CHHHH------------------------HHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCC-C
Confidence 11111 113578899999998888765 459999999999999999888 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
||+|||||||||+.+...+.+.|+++.++.|+|+|++.|++ .++..++|+|++|.+|+++..|+++++.+
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 99999999999999999999999999876688999988765 57899999999999999999999998753
No 389
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.96 E-value=4e-29 Score=268.20 Aligned_cols=190 Identities=26% Similarity=0.355 Sum_probs=158.5
Q ss_pred CCCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 3 SLNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
.+.|++|||||||.+-..|. .+|+|+++|.++.+.. ..+.++||||+....+.+||+|-..+...=. ..
T Consensus 32 ~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~---~~-- 106 (258)
T COG1120 32 GILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPH---LG-- 106 (258)
T ss_pred EEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcc---cc--
Confidence 36799999999999999983 5799999999998754 3467899999998888999999998852210 00
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
.....+++ ....++..|+.+|+.+-++..+. .|||||||||-|||++..+
T Consensus 107 ~~~~~~~~-------------------------D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~ 156 (258)
T COG1120 107 LFGRPSKE-------------------------DEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQE 156 (258)
T ss_pred cccCCCHh-------------------------HHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcC
Confidence 00000111 01146788999999999998775 4999999999999999888
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
| +||+||||||.||-....++++.+++++++.|+|+|+++|.+. -....+|++++|.+|+++.+|++.+++
T Consensus 157 ~-~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 157 T-PILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred C-CEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhc
Confidence 8 7999999999999999999999999999988999999999654 678899999999999999999998777
No 390
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.96 E-value=8.3e-29 Score=285.82 Aligned_cols=186 Identities=20% Similarity=0.310 Sum_probs=159.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+.. .++.++||+|+..+||.+||+||+.|+.+.++.
T Consensus 35 l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-------- 106 (353)
T TIGR03265 35 LLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGM-------- 106 (353)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCC--------
Confidence 6799999999999999995 5799999999887532 356789999999999999999999998654321
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
++++. +..++++++.+||++..|..+ +.|||||||||+|||+++.+| +
T Consensus 107 --~~~~~------------------------~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QRvaLARaL~~~P-~ 154 (353)
T TIGR03265 107 --GRAEV------------------------AERVAELLDLVGLPGSERKYP-----GQLSGGQQQRVALARALATSP-G 154 (353)
T ss_pred --CHHHH------------------------HHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCC-C
Confidence 11111 113678899999999888765 469999999999999999988 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|+|||||||||..+...+.+.|+++.++.++|+|++.|.+ .++..++|+|++|++|+++++|+++++.+
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999877788998888866 48899999999999999999999988874
No 391
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.96 E-value=1e-28 Score=282.85 Aligned_cols=185 Identities=21% Similarity=0.274 Sum_probs=155.8
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
+.|++|||||||.+...|. .+|+|++||.++.+.. .++.++||+|+..+++.+||+||+.|..++.+.
T Consensus 36 IiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--- 112 (343)
T TIGR02314 36 VIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT--- 112 (343)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCC---
Confidence 5799999999999999994 4799999999887543 245789999999999999999999997654321
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
++++. ...+.++++.+||.+..|... +.|||||||||+|||+++
T Consensus 113 -------~~~~~------------------------~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~ 156 (343)
T TIGR02314 113 -------PKDEI------------------------KRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALA 156 (343)
T ss_pred -------CHHHH------------------------HHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHH
Confidence 01111 113567899999999888765 469999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
.+| +||+|||||||||+.+...+++.|++++++.|.|||++.|+ ...+.+.+|+|++|++|++++.|++.++.
T Consensus 157 ~~P-~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~-~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 157 SNP-KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE-MDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred hCC-CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 887 89999999999999999999999999987668999998776 44667889999999999999999998875
No 392
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=1e-28 Score=254.40 Aligned_cols=187 Identities=22% Similarity=0.336 Sum_probs=155.5
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
..|.+|+|||||.+...|. .+|+|.++|.++.... .|+..|++.|+-.||..|||.||+.|-.+-.+
T Consensus 39 iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~---- 114 (263)
T COG1127 39 ILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT---- 114 (263)
T ss_pred EECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc----
Confidence 4689999999999999984 5899999999998654 34568999999999999999999999544221
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCccc-ccceecCCcCCcCCccccchhhHHHHH
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDIC-ADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~-~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
++ ++++ ++ ..+..-|+..||... +| .+...||||+|||+++|||+
T Consensus 115 -~l----p~~~----------i~--------------~lv~~KL~~VGL~~~~~~-----~~PsELSGGM~KRvaLARAi 160 (263)
T COG1127 115 -KL----PESL----------IR--------------ELVLMKLELVGLRGAAAD-----LYPSELSGGMRKRVALARAI 160 (263)
T ss_pred -cC----CHHH----------HH--------------HHHHHHHHhcCCChhhhh-----hCchhhcchHHHHHHHHHHH
Confidence 11 1221 11 123344788899765 44 44577999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
..+| +|+|+|||||||||.++..+.+.++++.+.-|.|+++..|+ -++++..+|++++|.+||++.+||++++..
T Consensus 161 aldP-ell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHD-l~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 161 ALDP-ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD-LDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred hcCC-CEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECC-hHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9998 89999999999999999999999999998889898887664 668999999999999999999999999985
No 393
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.96 E-value=1.2e-28 Score=280.43 Aligned_cols=185 Identities=28% Similarity=0.350 Sum_probs=157.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc--ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV--PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~--~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.... .++.++||+|++.+++.+||+|+|.|.+++++..
T Consensus 38 llGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~------ 111 (306)
T PRK13537 38 LLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS------ 111 (306)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC------
Confidence 6899999999999999995 4799999999886432 3567899999999999999999999877654311
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
.++. ...++.+++.+||.+.+|+.++ .||||||||++||++++.+|
T Consensus 112 ----~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~aL~~~P- 157 (306)
T PRK13537 112 ----AAAA------------------------RALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDP- 157 (306)
T ss_pred ----HHHH------------------------HHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHHHhCCC-
Confidence 1110 0124678999999999998875 59999999999999998887
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++|+|||||+|||+.+...+++.|+++++ .|+||+++-|++ .++...+|+|++|++|++++.|+++++..
T Consensus 158 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 158 DVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 89999999999999999999999999975 589999997764 47888999999999999999999998875
No 394
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=8.2e-29 Score=259.95 Aligned_cols=172 Identities=24% Similarity=0.343 Sum_probs=149.1
Q ss_pred CCCCCCCCCcchhhccccee---EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 3 SLNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
++.|++|||||||.....|. .+|+|.++|.+++. ....++||.|++.++|=+||+||+.|+.+.++..
T Consensus 33 silGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~------- 103 (248)
T COG1116 33 AILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKS------- 103 (248)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC--CCCCEEEEeccCcccchhhHHhhheehhhccccc-------
Confidence 57899999999999999994 67999999999854 3567899999999999999999999998876411
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
++|.+ ..+++.|+..||.+..|.. .+.|||||||||+|||+++.+| +
T Consensus 104 ---~~e~~------------------------~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQRVaiARAL~~~P-~ 150 (248)
T COG1116 104 ---KAEAR------------------------ERAKELLELVGLAGFEDKY-----PHQLSGGMRQRVAIARALATRP-K 150 (248)
T ss_pred ---hHhHH------------------------HHHHHHHHHcCCcchhhcC-----ccccChHHHHHHHHHHHHhcCC-C
Confidence 12221 1357789999999999965 5679999999999999999888 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCC
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEG 217 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G 217 (1218)
||+||||-++||+.|+..+.+.|.++.++.++|+++..|- =.|.+.+.|||+||+++
T Consensus 151 lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHd-i~EAv~LsdRivvl~~~ 207 (248)
T COG1116 151 LLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD-VDEAVYLADRVVVLSNR 207 (248)
T ss_pred EEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCC-HHHHHhhhCEEEEecCC
Confidence 9999999999999999999999999998889999988774 56889999999999984
No 395
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.95 E-value=1.7e-28 Score=282.31 Aligned_cols=186 Identities=22% Similarity=0.295 Sum_probs=157.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc-------cceEEeeccccccCCCCCHHHHHHHHhhccCCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-------QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~-------~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
|.|++|||||||.+...|. .+|+|++||.++...+. ++.++||+|+..+||.+||+||+.|..+..+.
T Consensus 24 l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~-- 101 (363)
T TIGR01186 24 IMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-- 101 (363)
T ss_pred EECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCC--
Confidence 6799999999999999984 67999999999876442 56789999999999999999999998665421
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
++++. ...+.++++.+||++..|..++ .|||||||||+|||++
T Consensus 102 --------~~~~~------------------------~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL 144 (363)
T TIGR01186 102 --------PEQER------------------------KEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARAL 144 (363)
T ss_pred --------CHHHH------------------------HHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHH
Confidence 01111 1135678999999888887664 4999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+.+| +||+|||||||||+.++..+.+.++++.+..++|||++.|.. .++..++|+|++|.+|++++.|+++++..
T Consensus 145 ~~~p-~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 145 AAEP-DILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred hcCC-CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9888 799999999999999999999999999876689999887754 46789999999999999999999988763
No 396
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.95 E-value=4.8e-29 Score=316.57 Aligned_cols=184 Identities=18% Similarity=0.286 Sum_probs=154.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ .|+.++||+|++.+|+. |+||||.++..
T Consensus 484 IvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~---------- 552 (686)
T TIGR03797 484 IVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP---------- 552 (686)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC----------
Confidence 5699999999999999994 4799999999998764 46789999999999875 99999998521
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++|+.++++.+..+.++..+ ++..||.||+.+ +.||||||||++|||+++.+|
T Consensus 553 -------------~~~e~i~~al~~a~l~~~i~~l-----------p~G~dt~ige~G-~~LSGGQrQRialARAll~~p 607 (686)
T TIGR03797 553 -------------LTLDEAWEAARMAGLAEDIRAM-----------PMGMHTVISEGG-GTLSGGQRQRLLIARALVRKP 607 (686)
T ss_pred -------------CCHHHHHHHHHHcCcHHHHHhc-----------cccccccccCCC-CCCCHHHHHHHHHHHHHhcCC
Confidence 0123466677777766665544 455699999863 679999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..+.+.|+++ ++|+|++.|++ ++.+.+|+|++|++|+++++|+++++++
T Consensus 608 -~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 608 -RILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred -CEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 799999999999999999999999875 35777666654 6899999999999999999999999874
No 397
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.1e-28 Score=281.86 Aligned_cols=186 Identities=24% Similarity=0.356 Sum_probs=158.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc-cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~-~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+... ++.++||+|+..+||.+||+||+.|..+.++..
T Consensus 37 llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~------- 109 (351)
T PRK11432 37 LLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVP------- 109 (351)
T ss_pred EECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCC-------
Confidence 6799999999999999994 57999999998875433 467899999999999999999999987654211
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
+++. +..++++++.+||.+..|... +.|||||||||+|||+|+.+| +
T Consensus 110 ---~~~~------------------------~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRVaLARaL~~~P-~ 156 (351)
T PRK11432 110 ---KEER------------------------KQRVKEALELVDLAGFEDRYV-----DQISGGQQQRVALARALILKP-K 156 (351)
T ss_pred ---HHHH------------------------HHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCC-C
Confidence 1111 113577899999998887664 469999999999999999988 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
||+|||||||||+.+..++.+.|+++.++.++|+|++.|.+ .++..++|+|++|++|+++..|+++++..
T Consensus 157 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 157 VLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999876688988887755 57889999999999999999999998753
No 398
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.3e-28 Score=261.49 Aligned_cols=189 Identities=23% Similarity=0.358 Sum_probs=159.3
Q ss_pred CCCCCCCCCcchhhccccee---EEEEEEECCc---ccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCch
Q 000937 3 SLNDRIGFGLSVISWFCTGL---VTGEVSYNGY---KLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRA 75 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~---~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~ 75 (1218)
-|+|++|||||||.+..-|. ..|.|.+||. |.+... ..+.+|||.|+-.+|+.|||.+|+.|+.+++. .
T Consensus 32 aLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~-~--- 107 (345)
T COG1118 32 ALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-E--- 107 (345)
T ss_pred EEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc-c---
Confidence 37899999999999999984 5799999999 666532 34678999999999999999999999998872 1
Q ss_pred hhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhh
Q 000937 76 DILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLV 155 (1218)
Q Consensus 76 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~ 155 (1218)
.|. ..+. +..++++|+...|++.++- +...|||||||||++||++..
T Consensus 108 -~p~---~~~~------------------------r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRVALARALA~ 154 (345)
T COG1118 108 -RPS---EAEI------------------------RARVEELLRLVQLEGLADR-----YPAQLSGGQRQRVALARALAV 154 (345)
T ss_pred -CCC---hhhH------------------------HHHHHHHHHHhcccchhhc-----CchhcChHHHHHHHHHHHhhc
Confidence 111 1111 1246788999999888775 467899999999999999999
Q ss_pred CCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 156 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 156 ~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
.| +||+||||.++||+.-..++-+.|+++-++.|.|++...| --.|+++++|+|++|++|+|...||++|+-+
T Consensus 155 eP-~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH-D~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 155 EP-KVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH-DQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred CC-CeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC-CHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 88 7999999999999999999999999988776777777655 5679999999999999999999999999875
No 399
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=8e-29 Score=254.57 Aligned_cols=196 Identities=20% Similarity=0.287 Sum_probs=159.0
Q ss_pred CCCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCC
Q 000937 3 SLNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
.+.|++|||||||.+-..| ..+|+|++||.++.... +|+.+||+.|+..+.|.+||-||+.....-+.+--
T Consensus 34 aiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~ 113 (258)
T COG3638 34 AIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTW 113 (258)
T ss_pred EEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHH
Confidence 4679999999999998887 45799999998887653 46778999999999999999999988643221000
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
..+..-.|++++. ..=+.|+.+|+.+.+-++.++ |||||+|||+|||+|
T Consensus 114 -~slfglfsk~dk~-------------------------~Al~aLervgi~~~A~qra~~-----LSGGQQQRVaIARaL 162 (258)
T COG3638 114 -RSLFGLFSKEDKA-------------------------QALDALERVGILDKAYQRAST-----LSGGQQQRVAIARAL 162 (258)
T ss_pred -HHHhCCCCHHHHH-------------------------HHHHHHHHcCcHHHHHHHhcc-----CCcchhHHHHHHHHH
Confidence 0011111222221 123458999999999998765 999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHH
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEF 231 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~y 231 (1218)
+.+| +|++-||||+.||+.++..||+.|++++++.|.|+|+.+||-- -.-+.||||+-|.+|+++|.||++++-+.
T Consensus 163 ~Q~p-kiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~G~ivfDg~~~el~~~ 238 (258)
T COG3638 163 VQQP-KIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASELTDE 238 (258)
T ss_pred hcCC-CEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEecCCcEEEeCChhhhhHH
Confidence 8888 9999999999999999999999999999999999999999843 34677999999999999999999987764
No 400
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.4e-28 Score=245.37 Aligned_cols=185 Identities=23% Similarity=0.292 Sum_probs=160.5
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|+|.+||||||+.+...+ ..+|.|++||.+..+. ..|+.+|.++-+--++.-||+||||.|.+++.+
T Consensus 33 lLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~-------- 104 (245)
T COG4555 33 LLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNG-------- 104 (245)
T ss_pred EEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhh--------
Confidence 679999999999998887 4589999999988743 346778888888889999999999999999864
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
+++++-++ ..+++.+.|+|.+|.|+++|+ +|-|+||||+|||+++.+|
T Consensus 105 --l~~~~~ka------------------------ri~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iARAlvh~P- 152 (245)
T COG4555 105 --LSRKEIKA------------------------RIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIARALVHDP- 152 (245)
T ss_pred --hhhhHHHH------------------------HHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHHHHhcCC-
Confidence 33444322 357789999999999999985 9999999999999998888
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++|||||||||-.+...+.+.++++.. .|++||.+-| -.+|+-.++|+|+++++|++|+.|+...+..
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSSH-~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSSH-IMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEecc-cHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 89999999999999999999999998864 6899999965 7888888999999999999999999987764
No 401
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.95 E-value=8.5e-28 Score=323.52 Aligned_cols=191 Identities=22% Similarity=0.385 Sum_probs=151.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHH
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEE 722 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 722 (1218)
+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++| .++||+|++.+++ .||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~--~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP--SEGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 4699999999999999999999999999999999999887 489999988 3899999998887 49999
Q ss_pred HHHHHHhhccCCCCChhhHHHHHH--HHHHHcCC-CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000937 723 SLFFSAWLRLAPQINSKTKADCVN--HVLKTIEL-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799 (1218)
Q Consensus 723 ~l~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~l-~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsg 799 (1218)
|+.|+... ..+..++..+ .+.+.++. .+..++.+|..+ ..||||||||++||||++.+|++++|||||+|
T Consensus 506 NI~~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g-~~LSgGqkqRi~lARAl~~~~~illLDep~sa 578 (1490)
T TIGR01271 506 NIIFGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG-ITLSGGQRARISLARAVYKDADLYLLDSPFTH 578 (1490)
T ss_pred HHHhcccc------chHHHHHHHHHHhHHHHHHhccccccccccCcC-CCcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 99986321 1111111111 11122222 122345566553 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 800 LDARAAAIVMRA-VKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 800 LD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
||+.++..+.+. ++++. +|+|+|++||+++ ....+|++++|. +|+++..|+.++
T Consensus 579 LD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~--~~~~ad~ii~l~-~g~i~~~g~~~~ 633 (1490)
T TIGR01271 579 LDVVTEKEIFESCLCKLM-SNKTRILVTSKLE--HLKKADKILLLH-EGVCYFYGTFSE 633 (1490)
T ss_pred CCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH--HHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 999999999984 66664 4899999999985 456799999998 699999998653
No 402
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=1.4e-27 Score=284.66 Aligned_cols=206 Identities=26% Similarity=0.357 Sum_probs=160.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.+|++..+. .+.+++|+|+++.+|+.+||+|+||||||||||+|+|...|. +|+|...+.
T Consensus 3 ~i~~~~ls~~~g--------------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~--~G~i~~~~~- 65 (530)
T COG0488 3 MITLENLSLAYG--------------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD--SGEVTRPKG- 65 (530)
T ss_pred eEEEeeeEEeeC--------------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC--CCeEeecCC-
Confidence 477889988873 468999999999999999999999999999999999988764 899976541
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhc-------------cCCC--------------CChhhHHHHHHHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLR-------------LAPQ--------------INSKTKADCVNHV 748 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~~~~~ 748 (1218)
-.++|++|+....+..||.+.+.-+..-. .+.. ....+.+.+++.+
T Consensus 66 -------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~ 138 (530)
T COG0488 66 -------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEA 138 (530)
T ss_pred -------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHH
Confidence 24899999999999999999876542100 0000 0001112456777
Q ss_pred HHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 000937 749 LKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQ 828 (1218)
Q Consensus 749 l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 828 (1218)
+..+|+.+. ++.+ .+||||||.||+||++|+.+|++|+|||||++||..+..-+-+.|++. .| |+|+||||
T Consensus 139 L~gLg~~~~-~~~~-----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD 209 (530)
T COG0488 139 LLGLGFPDE-DRPV-----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD 209 (530)
T ss_pred HhcCCCCcc-cCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC
Confidence 888888766 6665 479999999999999999999999999999999999999999999864 46 99999998
Q ss_pred CCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 829 PSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 829 ~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
-. -+-+.|++++-++.+.-..|.|..
T Consensus 210 R~-FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 210 RY-FLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred HH-HHHHHhhheEEecCCceeEecCCH
Confidence 42 344567888888753344566654
No 403
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=2.8e-27 Score=257.81 Aligned_cols=191 Identities=19% Similarity=0.300 Sum_probs=132.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHH-HHHhCCCCCCceeeEEEE------------CCEe-Ccccccc-ceEE
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLL-DVLAGRKTSGCFKGEIKV------------NGYP-KIQETFV-RVSG 706 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl-~~l~g~~~~~~~~G~i~~------------~g~~-~~~~~~~-~~~~ 706 (1218)
..++|+|+|+++++||+++|+||||||||||+ ..+.. .|++.+ .... ......+ ....
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA 79 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence 45799999999999999999999999999995 44431 121111 0000 0000111 1223
Q ss_pred EeccCCC--CCCCCCHHH---HHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHH
Q 000937 707 YCEQTDI--HSPHITIEE---SLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGLSTEQRKRLTI 780 (1218)
Q Consensus 707 ~v~q~~~--~~~~lTv~e---~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGerqRv~i 780 (1218)
+..|++. ..+..+|.. ...+...+. ......++ .+.++.+++.+ ..+... .+||||||||++|
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~l 148 (226)
T cd03270 80 IAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRL 148 (226)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCcc-----CcCCHHHHHHHHH
Confidence 3333332 234455542 222211111 11112223 46788899875 345543 5899999999999
Q ss_pred HHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE------ecCCEEEEE
Q 000937 781 GVELVANP--SIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL------KTGGRIIYS 852 (1218)
Q Consensus 781 a~~L~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l------~~~G~~~~~ 852 (1218)
|++|+.+| ++++|||||+|||+.++..+.+.|++++++|.|||++||+++ ..+.+|++++| . +|+++++
T Consensus 149 aral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~--~~~~~d~i~~l~~~~~~~-~G~iv~~ 225 (226)
T cd03270 149 ATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED--TIRAADHVIDIGPGAGVH-GGEIVAQ 225 (226)
T ss_pred HHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH--HHHhCCEEEEeCCCcccc-CCEEEec
Confidence 99999998 599999999999999999999999999878999999999975 35789999999 5 6899887
Q ss_pred c
Q 000937 853 G 853 (1218)
Q Consensus 853 g 853 (1218)
|
T Consensus 226 g 226 (226)
T cd03270 226 G 226 (226)
T ss_pred C
Confidence 6
No 404
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.8e-28 Score=267.54 Aligned_cols=186 Identities=24% Similarity=0.294 Sum_probs=152.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+.. .++.++||+|++.+++.+||+|++.+.......
T Consensus 31 l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~--- 107 (235)
T cd03261 31 IIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTR--- 107 (235)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccC---
Confidence 6799999999999999995 4799999999876432 345689999999999999999999987542110
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
.+.++. ...++.+++.+||.+..++.++ .|||||||||+|||+++
T Consensus 108 ------~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ia~al~ 152 (235)
T cd03261 108 ------LSEEEI------------------------REIVLEKLEAVGLRGAEDLYPA-----ELSGGMKKRVALARALA 152 (235)
T ss_pred ------CCHHHH------------------------HHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHh
Confidence 001110 0124667899999887777664 59999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
.+| +|++|||||+|||+.+...+++.|++++++.++|||++-|.+. ++...+|+|++|.+|++++.|+++++.
T Consensus 153 ~~p-~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 153 LDP-ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred cCC-CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 887 7999999999999999999999999998655789888877654 677889999999999999999988764
No 405
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.95 E-value=3.5e-28 Score=280.89 Aligned_cols=186 Identities=20% Similarity=0.316 Sum_probs=157.1
Q ss_pred CCCCCCCCcchhhccccee---EE--EEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VT--GEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~--G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
|.|++|||||||.+...|. .+ |+|.+||.++.+.. .++.++||+|+..+||.+||+||+.|+.+.++.
T Consensus 36 llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~------ 109 (362)
T TIGR03258 36 LIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM------ 109 (362)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC------
Confidence 6799999999999999994 46 99999999886533 245689999999999999999999998764321
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
++++. +..++++++.+||++..|..+ +.|||||||||+|||+|+.+|
T Consensus 110 ----~~~~~------------------------~~~v~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvaLARAL~~~P 156 (362)
T TIGR03258 110 ----PKADI------------------------AERVADALKLVGLGDAAAHLP-----AQLSGGMQQRIAIARAIAIEP 156 (362)
T ss_pred ----CHHHH------------------------HHHHHHHHHhcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 01111 113578899999999888876 459999999999999999888
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhc-CCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHIT-DATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~-g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++|+|||||||||+.+..++.+.|+++.++. |+|+|++.|. ..++..++|+|++|.+|+++.+|+++++..
T Consensus 157 -~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd-~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 157 -DVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHD-QDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred -CEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 8999999999999999999999999998764 7888888775 457899999999999999999999998864
No 406
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.95 E-value=2.9e-28 Score=277.71 Aligned_cols=185 Identities=26% Similarity=0.359 Sum_probs=156.0
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|.++|.++... ..++.++||+|++.+++.+||+|+|.|.+++++..
T Consensus 24 l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~------ 97 (302)
T TIGR01188 24 FLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP------ 97 (302)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC------
Confidence 6799999999999999995 479999999987542 23456899999999999999999999987654310
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
..+. ...++++++.+||.+..|+.++ .|||||||||+||++++.+|
T Consensus 98 ----~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p- 143 (302)
T TIGR01188 98 ----KDEA------------------------EERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQP- 143 (302)
T ss_pred ----HHHH------------------------HHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCC-
Confidence 1110 0125678999999998888764 59999999999999998887
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++|+|||||+|||+.+...+++.|+++++ .|+|||++-|++ .++...+|+|++|.+|++++.|+++++..
T Consensus 144 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 144 DVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 89999999999999999999999999975 488999987764 47788999999999999999999998765
No 407
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.8e-28 Score=260.63 Aligned_cols=186 Identities=24% Similarity=0.333 Sum_probs=155.9
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccC----CccccceEEeecccc-ccCCCCCHHHHHHHHhhccCCCCch
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLE----EFVPQKLSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRA 75 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~----~~~~~~~~~yV~Q~D-~l~~~LTVrEtL~Faa~lk~~~~~~ 75 (1218)
+.|++|||||||.+...|. .+|.|.++|.+.. ....++.+|||.|++ ..+-.-||.|-+.|..+..+.
T Consensus 35 i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~---- 110 (235)
T COG1122 35 LIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL---- 110 (235)
T ss_pred EECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCC----
Confidence 5689999999999999994 5699999999876 234578899999995 566677999999998776542
Q ss_pred hhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhh
Q 000937 76 DILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLV 155 (1218)
Q Consensus 76 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~ 155 (1218)
++++. +.+++.+++..||.+.+|... ..|||||||||+||..+..
T Consensus 111 ------~~~e~------------------------~~rv~~~l~~vgl~~~~~r~p-----~~LSGGqkqRvaIA~vLa~ 155 (235)
T COG1122 111 ------PREEI------------------------EERVAEALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAM 155 (235)
T ss_pred ------CHHHH------------------------HHHHHHHHHHcCchhhccCCc-----cccCCcceeeHHhhHHHHc
Confidence 11111 124788899999999988764 4599999999999988888
Q ss_pred CCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 156 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 156 ~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+| +||+|||||||||+....++++.++++...+|.|+|++-| -...+...+|++++|++|+++++|++.++.+
T Consensus 156 ~P-~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tH-d~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 156 GP-EILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTH-DLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred CC-CEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeC-cHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 87 9999999999999999999999999999877788888766 4556777799999999999999999877664
No 408
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.95 E-value=6.3e-28 Score=279.70 Aligned_cols=186 Identities=23% Similarity=0.326 Sum_probs=157.5
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.... .++.++||+|+..+||.+||+||+.|+.+.++.
T Consensus 45 LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-------- 116 (375)
T PRK09452 45 LLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKT-------- 116 (375)
T ss_pred EECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCC--------
Confidence 6899999999999999994 5799999999886533 246789999999999999999999998654321
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
++++. +..++++++.+||++..|..+ +.|||||||||+|||+++.+| +
T Consensus 117 --~~~~~------------------------~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~QRVaLARaL~~~P-~ 164 (375)
T PRK09452 117 --PAAEI------------------------TPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQRVAIARAVVNKP-K 164 (375)
T ss_pred --CHHHH------------------------HHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCC-C
Confidence 01111 113577899999999888765 469999999999999999988 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
||+|||||||||..+...+.+.|+++.++.|+|+|++.|. ..++..++|+|++|.+|+++..|+++++.+
T Consensus 165 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd-~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHD-QEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999988778888888775 457899999999999999999999988764
No 409
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.95 E-value=1.5e-28 Score=313.02 Aligned_cols=187 Identities=25% Similarity=0.385 Sum_probs=155.8
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.|+++.+ +|+.++||+|++.+|+. ||||||.+..+-.
T Consensus 505 IvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~~-------- 575 (708)
T TIGR01193 505 IVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKEN-------- 575 (708)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCCC--------
Confidence 5699999999999999984 5799999999988754 46789999999999875 9999999853100
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++++.++++.+.+++++.++ ++..||.||+. .+.||||||||++|||+++.+|
T Consensus 576 -------------~~~~~i~~a~~~a~l~~~i~~l-----------p~gldt~i~e~-G~~LSgGQrQRialARall~~p 630 (708)
T TIGR01193 576 -------------VSQDEIWAACEIAEIKDDIENM-----------PLGYQTELSEE-GSSISGGQKQRIALARALLTDS 630 (708)
T ss_pred -------------CCHHHHHHHHHHhCCHHHHHhc-----------ccccCcEecCC-CCCCCHHHHHHHHHHHHHhhCC
Confidence 1123566777777776666544 45569999985 4679999999999999999998
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..+++.|+++ .++|+|++.|++ ++...+|+|++|++|++++.|+++++++
T Consensus 631 -~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~--~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 631 -KVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL--SVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred -CEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 799999999999999999999999874 357777766665 5889999999999999999999999985
No 410
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=7.9e-28 Score=279.45 Aligned_cols=186 Identities=20% Similarity=0.286 Sum_probs=157.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+.. .++.++||+|+..+||.+||+||+.|+.+.+..
T Consensus 50 llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-------- 121 (377)
T PRK11607 50 LLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKL-------- 121 (377)
T ss_pred EECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC--------
Confidence 6899999999999999995 5899999999886532 356789999999999999999999998654321
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
++.+. ...++++++.+||.+..|..+ +.|||||||||+|||+++.+| +
T Consensus 122 --~~~~~------------------------~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~QRVaLARAL~~~P-~ 169 (377)
T PRK11607 122 --PKAEI------------------------ASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQRVALARSLAKRP-K 169 (377)
T ss_pred --CHHHH------------------------HHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCC-C
Confidence 01111 113577899999998877665 469999999999999999888 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
||+|||||||||..+...+.+.|+++.++.|.|+|++-|.+ .++..++|+|++|++|+++..|+++++.+
T Consensus 170 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 170 LLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 99999999999999999999999998876788988887754 47899999999999999999999998764
No 411
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.95 E-value=2.4e-28 Score=305.24 Aligned_cols=188 Identities=23% Similarity=0.364 Sum_probs=154.8
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ +++.++||+|++.+|+ .||||||.++.. +
T Consensus 374 IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~----~----- 443 (582)
T PRK11176 374 LVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYART----E----- 443 (582)
T ss_pred EECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCCC----C-----
Confidence 5689999999999999995 4699999999988754 4677899999999997 599999988521 0
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
. ..++|++.+++.+..++++.+ |++..||.+|+. .+.||||||||++|||+++.+|
T Consensus 444 --~----------~~~~~i~~al~~~~l~~~i~~-----------lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~ 499 (582)
T PRK11176 444 --Q----------YSREQIEEAARMAYAMDFINK-----------MDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_pred --C----------CCHHHHHHHHHHhCcHHHHHh-----------cccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCC
Confidence 0 012346666666666555544 455669999985 3669999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..+.+.|+++++ ++|+|+.-|++ ++.+.+|+|++|++|++++.|+++++++
T Consensus 500 -~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 500 -PILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred -CEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 79999999999999999999999998753 56777666665 6899999999999999999999999985
No 412
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.95 E-value=2.9e-28 Score=304.79 Aligned_cols=186 Identities=20% Similarity=0.310 Sum_probs=155.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ +++.++||+|++.+|+. |++|||.++..
T Consensus 372 IvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~---------- 440 (592)
T PRK10790 372 LVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRD---------- 440 (592)
T ss_pred EECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCC----------
Confidence 4689999999999999995 4699999999988654 46789999999999986 99999999521
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
..+++++++++++..+.++..+ ++..||.||+. ...||||||||++|||+++.+|
T Consensus 441 -------------~~d~~i~~a~~~~gl~~~i~~l-----------p~Gldt~i~e~-g~~LSGGqrQRialARaLl~~~ 495 (592)
T PRK10790 441 -------------ISEEQVWQALETVQLAELARSL-----------PDGLYTPLGEQ-GNNLSVGQKQLLALARVLVQTP 495 (592)
T ss_pred -------------CCHHHHHHHHHHcCcHHHHHhc-----------cccccccccCC-CCCCCHHHHHHHHHHHHHHhCC
Confidence 0123466677777666555543 45569999984 3569999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++||||||+||+.++..+.+.|+++++ ++|+|+..|++ +....+|+|++|++|++++.|+++++++
T Consensus 496 -~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 496 -QILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred -CEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 79999999999999999999999998763 56777776765 6888999999999999999999999984
No 413
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5.1e-28 Score=243.83 Aligned_cols=186 Identities=23% Similarity=0.334 Sum_probs=149.8
Q ss_pred CCCCCCCCcchhhcccc--------eeEEEEEEECCcccCCc-----cccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000937 4 LNDRIGFGLSVISWFCT--------GLVTGEVSYNGYKLEEF-----VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQG 70 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~--------g~~~G~V~~nG~~~~~~-----~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~ 70 (1218)
|.|++||||||+.+-.. -+++|+|.++|.++-+. .+|+.+|.|.|.+.-|| +|+.||+.|..++.+
T Consensus 38 lIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g 116 (253)
T COG1117 38 LIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG 116 (253)
T ss_pred EECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc
Confidence 67999999999988654 26899999999998764 25788999999999999 899999999999886
Q ss_pred CCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHH
Q 000937 71 VGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTG 150 (1218)
Q Consensus 71 ~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA 150 (1218)
... . + .++-++...+.|..|+..++.. | ....||||||+||++||
T Consensus 117 ~~~-~---------~------ldeiVe~sLk~AaLWdEVKDrL--------------~-----~sa~~LSGGQQQRLcIA 161 (253)
T COG1117 117 IKD-K---------E------LDEIVESSLKKAALWDEVKDRL--------------H-----KSALGLSGGQQQRLCIA 161 (253)
T ss_pred cch-H---------H------HHHHHHHHHHHhHhHHHhHHHh--------------h-----CCccCCChhHHHHHHHH
Confidence 432 0 1 0122455666666666555431 1 12357999999999999
Q ss_pred HHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 151 REMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 151 ~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
|++...| +||+||||||+|||.++..|=+.+.++.+ .-|||+..| -.....+-.|+...+..|++|++|+.+++.
T Consensus 162 RalAv~P-eVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTH-nmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 162 RALAVKP-EVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTH-NMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHhcCC-cEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeC-CHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 9998888 89999999999999999999999999974 457777656 455678889999999999999999998765
No 414
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.8e-28 Score=277.11 Aligned_cols=185 Identities=22% Similarity=0.289 Sum_probs=155.0
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|++||.++.... .++.++||+|+..+++.+||+||+.|.....+.
T Consensus 36 iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~--- 112 (343)
T PRK11153 36 VIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGT--- 112 (343)
T ss_pred EECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCC---
Confidence 6799999999999999995 5799999999886532 245689999999999999999999997654321
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
+.++. ...++++++.+||.+..|+.+ +.|||||||||+|||+++
T Consensus 113 -------~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 113 -------PKAEI------------------------KARVTELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALA 156 (343)
T ss_pred -------CHHHH------------------------HHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHH
Confidence 01110 012567899999998888765 459999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
.+| +||+|||||+|||+.+...+++.|+++++..|+|+|++.|++. ++...+|+|++|++|++++.|+++++.
T Consensus 157 ~~p-~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 157 SNP-KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred cCC-CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 887 7999999999999999999999999998766889999888654 677889999999999999999998775
No 415
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.95 E-value=9.4e-28 Score=279.42 Aligned_cols=186 Identities=20% Similarity=0.331 Sum_probs=156.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+.. .++.++||+|+..++|.+||+||+.|..+.++.
T Consensus 34 l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~-------- 105 (369)
T PRK11000 34 FVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA-------- 105 (369)
T ss_pred EECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCC--------
Confidence 6899999999999999995 4799999999886532 245689999999999999999999997654321
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
+.++. ...++++++.+||++..|..+ +.|||||||||+|||+++.+| +
T Consensus 106 --~~~~~------------------------~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAraL~~~P-~ 153 (369)
T PRK11000 106 --KKEEI------------------------NQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEP-S 153 (369)
T ss_pred --CHHHH------------------------HHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCC-C
Confidence 01111 113577899999998888766 459999999999999999888 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
||+|||||||||+.+...+.+.|+++.++.|+|+|++-|++ .++..++|+|++|.+|++++.|+++++..
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999876688988887765 47889999999999999999999988754
No 416
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.95 E-value=1.2e-27 Score=276.17 Aligned_cols=190 Identities=21% Similarity=0.306 Sum_probs=156.6
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc-cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~-~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|++||.++..... ++.++||+|+..++|.+||+||+.|..+.+....
T Consensus 33 llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~------ 106 (353)
T PRK10851 33 LLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE------ 106 (353)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc------
Confidence 6799999999999999994 57999999998865332 3568999999999999999999999865421000
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
..++++. ...++++++.+||++..|..+ +.|||||||||+|||+++.+| +
T Consensus 107 ~~~~~~~------------------------~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalArAL~~~P-~ 156 (353)
T PRK10851 107 RPNAAAI------------------------KAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVALARALAVEP-Q 156 (353)
T ss_pred CCCHHHH------------------------HHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCC-C
Confidence 0001111 113577899999998888765 459999999999999999888 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|+|||||||||+.+...+.+.|+++.++.++|+|++.|. ..++..++|+|++|++|++++.|+++++..
T Consensus 157 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd-~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD-QEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999987668888887664 467899999999999999999999988863
No 417
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.95 E-value=2.6e-28 Score=311.33 Aligned_cols=185 Identities=28% Similarity=0.376 Sum_probs=153.9
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.|+++.+ +|+.++||+|++.+|+ .||||||.++.. +
T Consensus 510 IvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~~----~----- 579 (710)
T TIGR03796 510 LVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWDP----T----- 579 (710)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCCC----C-----
Confidence 5699999999999999994 5799999999998754 4778999999999996 599999987421 0
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++++.++++.+..++++.++ ++..||.||+. ++.||||||||++|||+++.+|
T Consensus 580 -------------~~~~~i~~al~~~~l~~~i~~l-----------p~gl~t~i~e~-G~~LSGGQrQRiaLARall~~p 634 (710)
T TIGR03796 580 -------------IPDADLVRACKDAAIHDVITSR-----------PGGYDAELAEG-GANLSGGQRQRLEIARALVRNP 634 (710)
T ss_pred -------------CCHHHHHHHHHHhCCHHHHHhC-----------cCcccceeccC-CCCCCHHHHHHHHHHHHHhhCC
Confidence 1123466677777666655543 45569999976 4679999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..+.+.|++ .++|+|++-|++ ++...+|+|++|++|+++++|+++++++
T Consensus 635 -~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 635 -SILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred -CEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 79999999999999999999999986 367777776654 6889999999999999999999999985
No 418
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=1.6e-27 Score=297.50 Aligned_cols=216 Identities=18% Similarity=0.209 Sum_probs=148.4
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-CceeeEEEECC
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTS-GCFKGEIKVNG 693 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~-~~~~G~i~~~g 693 (1218)
-.|.++|+++++. .+.+|+|+|++|++||.+||+|||||||||||++|+|+... -+.+|+|.+.+
T Consensus 176 ~~I~i~nls~~y~--------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~ 241 (718)
T PLN03073 176 KDIHMENFSISVG--------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVE 241 (718)
T ss_pred eeEEEceEEEEeC--------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEe
Confidence 4689999999883 24699999999999999999999999999999999996311 12367776544
Q ss_pred EeCccc-----------------cccceEEEeccCCCCCCCCCHHHHHHHH---------------HhhccCCCCChhhH
Q 000937 694 YPKIQE-----------------TFVRVSGYCEQTDIHSPHITIEESLFFS---------------AWLRLAPQINSKTK 741 (1218)
Q Consensus 694 ~~~~~~-----------------~~~~~~~~v~q~~~~~~~lTv~e~l~~~---------------~~~~~~~~~~~~~~ 741 (1218)
+..... ..++.+++++|++.+... ++.++.... ..+..-........
T Consensus 242 Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 320 (718)
T PLN03073 242 QEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTA 320 (718)
T ss_pred ccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchH
Confidence 321000 001224555554322110 111110000 00000000001123
Q ss_pred HHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 000937 742 ADCVNHVLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGR 820 (1218)
Q Consensus 742 ~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~ 820 (1218)
++++.++++.+|+. +..++.+ .+|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ |.
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~ 392 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PK 392 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CC
Confidence 44566777888885 3345443 479999999999999999999999999999999999999999999886 68
Q ss_pred EEEEEecCCCHHHHHhhceEEEEecCCEEE-EEcCC
Q 000937 821 TIVCTIHQPSIDIFESFDELILLKTGGRII-YSGPL 855 (1218)
Q Consensus 821 tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g~~ 855 (1218)
|||+++|+.. .+.+.||++++|. +|++. |.|+.
T Consensus 393 tviivsHd~~-~l~~~~d~i~~l~-~g~i~~~~g~~ 426 (718)
T PLN03073 393 TFIVVSHARE-FLNTVVTDILHLH-GQKLVTYKGDY 426 (718)
T ss_pred EEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCCH
Confidence 9999999974 4566799999998 58886 56654
No 419
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.95 E-value=3.5e-28 Score=309.05 Aligned_cols=187 Identities=24% Similarity=0.383 Sum_probs=156.9
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.|+++.+ +|+.++||+|++.+|+. ||+|||.++..
T Consensus 496 IvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~---------- 564 (694)
T TIGR03375 496 IIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP---------- 564 (694)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC----------
Confidence 5699999999999999984 5799999999998764 46789999999999975 99999988521
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
+ .+++|+.++++.+..++++..+ ++..||.||+. ...||||||||++|||+++.+|
T Consensus 565 --~----------~~~~~i~~a~~~~~l~~~i~~l-----------p~gl~T~i~e~-G~~LSgGQrQRlalARall~~p 620 (694)
T TIGR03375 565 --Y----------ADDEEILRAAELAGVTEFVRRH-----------PDGLDMQIGER-GRSLSGGQRQAVALARALLRDP 620 (694)
T ss_pred --C----------CCHHHHHHHHHHcChHHHHHhC-----------cccccceecCC-CCCCCHHHHHHHHHHHHHhcCC
Confidence 0 1123567777777777666544 45569999985 4569999999999999999888
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++||||||+||+.++..+++.|+++.+ ++|+|++.|++ ++.+.+|+|++|++|+++++|+|+++++
T Consensus 621 -~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl--~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 621 -PILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRT--SLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 79999999999999999999999998763 56777766665 5889999999999999999999999986
No 420
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.95 E-value=3.4e-28 Score=301.63 Aligned_cols=186 Identities=26% Similarity=0.400 Sum_probs=154.8
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ +|+.++||+|++.+|+. |++||+.++..-
T Consensus 371 ivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~--------- 440 (574)
T PRK11160 371 LLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAPN--------- 440 (574)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCCc---------
Confidence 5689999999999999984 5799999999988764 46678999999988874 999999985310
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++++.++++.+..+.++.+ + +..||.||+. .+.||||||||++|||+++.+|
T Consensus 441 -------------~~~~~i~~al~~~~l~~~i~~-p-----------~GldT~vge~-g~~LSgGqrqRialARall~~~ 494 (574)
T PRK11160 441 -------------ASDEALIEVLQQVGLEKLLED-D-----------KGLNAWLGEG-GRQLSGGEQRRLGIARALLHDA 494 (574)
T ss_pred -------------cCHHHHHHHHHHcCCHHHHcC-c-----------cccCchhcCC-CCCCCHHHHHHHHHHHHHhcCC
Confidence 012345666666666655554 3 4459999985 4569999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..+.+.|+++. .++|+|++.|+++ +...+|+|++|++|++++.|+|+++++
T Consensus 495 -~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 495 -PLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLT--GLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred -CEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChh--HHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 7999999999999999999999999885 3678877777764 678899999999999999999999985
No 421
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=6e-28 Score=270.56 Aligned_cols=188 Identities=24% Similarity=0.351 Sum_probs=162.9
Q ss_pred CCCCCCCCCcchhhcccce---eEEEEEEECCcccCCccc-cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 3 SLNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVP-QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~~-~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
.|+|++||||||+.+...| ..+|+|.+||.+++..-. +|.+++|.|+-.|||+|||+||+.|..+++...
T Consensus 35 ~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~------ 108 (352)
T COG3842 35 TLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKL------ 108 (352)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCC------
Confidence 4789999999999999998 467999999999997643 678999999999999999999999998754211
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
.+++. +.++++.++.++|++-++-+. ..|||||+|||++||+|+..|
T Consensus 109 ---~~~~i------------------------~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQqQRVALARAL~~~P- 155 (352)
T COG3842 109 ---KKAEI------------------------KARVEEALELVGLEGFADRKP-----HQLSGGQQQRVALARALVPEP- 155 (352)
T ss_pred ---CHHHH------------------------HHHHHHHHHHcCchhhhhhCh-----hhhChHHHHHHHHHHHhhcCc-
Confidence 01111 124788899999999877654 569999999999999999888
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||-|+||..-..++...|+++.++.|.|.|...| .-.|...+.|||+||++|++...|+++|+-.
T Consensus 156 ~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTH-DqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 156 KVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTH-DQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred chhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEEC-CHHHHhhhccceEEccCCceeecCCHHHHhh
Confidence 8999999999999999999999999999989999888766 5679999999999999999999999998874
No 422
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2e-27 Score=253.61 Aligned_cols=187 Identities=25% Similarity=0.373 Sum_probs=154.5
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCccccceEEeeccc---cccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVPQKLSAYVSQY---DLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~~~~~~~yV~Q~---D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.|..-| ..+|+|.++|.+.+....+..+|||||. |.-|| +||+|.+....--+...
T Consensus 35 iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~----- 108 (254)
T COG1121 35 LIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGW----- 108 (254)
T ss_pred EECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccc-----
Confidence 679999999999999999 4689999999998866555689999993 67788 59999998863222110
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
....++++ ...+++.|+..|+.+.+|-.||+ |||||+|||-|||+|+.+|
T Consensus 109 ~~~~~~~d-------------------------~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~p 158 (254)
T COG1121 109 FRRLNKKD-------------------------KEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNP 158 (254)
T ss_pred cccccHHH-------------------------HHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHHhccCC
Confidence 00111111 12478899999999999999986 9999999999999998887
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++|+|||||+|+|+.++..+.+.|+++.++ |+||+++-| --..+.+.||+|+.|+ ++++++|+++++..
T Consensus 159 -~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtH-DL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 159 -DLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTH-DLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred -CEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeC-CcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 899999999999999999999999999986 999999755 5557889999999996 67889999988774
No 423
>PTZ00243 ABC transporter; Provisional
Probab=99.95 E-value=6.6e-27 Score=314.96 Aligned_cols=189 Identities=26% Similarity=0.365 Sum_probs=147.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHH
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIE 721 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 721 (1218)
.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++ +.++|++|++.++ +.||+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~--~~G~i~~~----------~~i~yv~Q~~~l~-~~Tv~ 738 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI--SEGRVWAE----------RSIAYVPQQAWIM-NATVR 738 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEEC----------CeEEEEeCCCccC-CCcHH
Confidence 35699999999999999999999999999999999998876 48999763 4589999998876 57999
Q ss_pred HHHHHHHhhccCCCCChhhHH-----HHHHHHHHHc--CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000937 722 ESLFFSAWLRLAPQINSKTKA-----DCVNHVLKTI--ELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMD 794 (1218)
Q Consensus 722 e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllD 794 (1218)
||+.|+.. ...+... ...++.++.+ |+ ++.+|.. ...|||||||||+|||||+.+|++++||
T Consensus 739 enI~~~~~------~~~~~~~~~~~~~~l~~~l~~l~~g~----~t~i~~~-g~~LSGGQkqRvaLARAl~~~p~illLD 807 (1560)
T PTZ00243 739 GNILFFDE------EDAARLADAVRVSQLEADLAQLGGGL----ETEIGEK-GVNLSGGQKARVSLARAVYANRDVYLLD 807 (1560)
T ss_pred HHHHcCCh------hhHHHHHHHHHHhhhHHHHHHhhccc----hHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99987421 0111101 1122233333 22 3344443 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 795 EPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 795 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
|||++||+.++..+++.+.....+|+|+|++||+++ ..+.+|++++|. +|++++.|+.++
T Consensus 808 EP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~-~G~i~~~G~~~~ 867 (1560)
T PTZ00243 808 DPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALG-DGRVEFSGSSAD 867 (1560)
T ss_pred CccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEE-CCEEEEecCHHH
Confidence 999999999999888754322235899999999874 467899999998 699999998643
No 424
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4e-28 Score=275.54 Aligned_cols=187 Identities=24% Similarity=0.357 Sum_probs=150.7
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.||+||||||+.....| .-+|+|++||.++...+ ++..+++++|...+|.+ |+|+||+.|..-
T Consensus 369 IlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~--------- 438 (573)
T COG4987 369 ILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANPD--------- 438 (573)
T ss_pred EECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCCC---------
Confidence 579999999999999998 46799999999988654 35678899998877765 999999997321
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++|+.++.+++--+.+..+ .++..||.+|+. ++++|||||||++|||.++.+-
T Consensus 439 -------------AsDEel~~aL~qvgL~~l~~~-----------~p~gl~t~lge~-G~~LSGGE~rRLAlAR~LL~da 493 (573)
T COG4987 439 -------------ASDEELWAALQQVGLEKLLES-----------APDGLNTWLGEG-GRRLSGGERRRLALARALLHDA 493 (573)
T ss_pred -------------CCHHHHHHHHHHcCHHHHHHh-----------ChhhhhchhccC-CCcCCchHHHHHHHHHHHHcCC
Confidence 122344444444433332222 233559999986 4779999999999999999877
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++++|||||.|||+.|+.++++.+.+.++ ++|+++..|+-+ =.+.||+|+||.+||+++.|.+.+++.
T Consensus 494 -pl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 494 -PLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred -CeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccc--cHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 69999999999999999999999998764 788888876544 678999999999999999999999985
No 425
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.9e-27 Score=261.18 Aligned_cols=189 Identities=23% Similarity=0.326 Sum_probs=152.7
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc-cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~-~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|++||.++..... ++.++||+|++.+++.+||+|++.|+.........
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~----- 107 (239)
T cd03296 33 LLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSER----- 107 (239)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhcccccc-----
Confidence 6799999999999999995 57999999998764322 34689999999999999999999987543211000
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
....+. ...++.+++.+||.+..+..++ .|||||||||+|||+++.+| +
T Consensus 108 -~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p-~ 156 (239)
T cd03296 108 -PPEAEI------------------------RAKVHELLKLVQLDWLADRYPA-----QLSGGQRQRVALARALAVEP-K 156 (239)
T ss_pred -CCHHHH------------------------HHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCC-C
Confidence 000000 0124667899999887777654 59999999999999999888 7
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
||+|||||+|||+.+...+.+.|++++++.|+|+|++-|++ .++...+|++++|.+|++++.|+++++.
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 157 VLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999999999999875588999988876 4577889999999999999999988764
No 426
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=2.2e-27 Score=238.74 Aligned_cols=134 Identities=33% Similarity=0.564 Sum_probs=118.5
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---ccccceEEEeccCCCCCCCCCHHH
Q 000937 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHITIEE 722 (1218)
Q Consensus 646 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e 722 (1218)
|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP--DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE--SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999998876 48999999998754 345678999999999999999999
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000937 723 SLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798 (1218)
Q Consensus 723 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPts 798 (1218)
+ ...++++++++.+++.+..++.++.+ ...||+|||||++||++|+.+|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------cccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 8 12345788999999988888877554 36899999999999999999999999999996
No 427
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.95 E-value=3.9e-28 Score=307.84 Aligned_cols=185 Identities=24% Similarity=0.368 Sum_probs=152.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.|+++.+ .|+.++||+|++.+|+ .||||||.+...-
T Consensus 512 IvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~~~--------- 581 (711)
T TIGR00958 512 LVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGLTD--------- 581 (711)
T ss_pred EECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCCCC---------
Confidence 5699999999999999984 4799999999998754 4567899999999887 5999999985210
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++++.++++.+.++.++.++ ++..||.+|+. .+.||||||||++|||+++.+|
T Consensus 582 -------------~~~e~i~~al~~a~l~~~i~~l-----------p~GldT~ige~-G~~LSGGQkQRlalARALl~~p 636 (711)
T TIGR00958 582 -------------TPDEEIMAAAKAANAHDFIMEF-----------PNGYDTEVGEK-GSQLSGGQKQRIAIARALVRKP 636 (711)
T ss_pred -------------CCHHHHHHHHHHcCCHHHHHhC-----------CCccCCcccCC-CCcCCHHHHHHHHHHHHHhcCC
Confidence 0123566777777776666543 45569999975 4669999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..+.+ ... ..++|+|+..|++ ++.+.+|+|++|++|++++.|+|+++++
T Consensus 637 -~ILILDEpTSaLD~~te~~i~~-~~~---~~~~TvIiItHrl--~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 637 -RVLILDEATSALDAECEQLLQE-SRS---RASRTVLLIAHRL--STVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred -CEEEEEccccccCHHHHHHHHH-hhc---cCCCeEEEEeccH--HHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 7999999999999999999888 222 2467877777665 5889999999999999999999999985
No 428
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.95 E-value=2.5e-27 Score=271.92 Aligned_cols=186 Identities=24% Similarity=0.320 Sum_probs=155.7
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+.. .++.++||+|+..++|.+||+||+.|..+.++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~-------- 72 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKV-------- 72 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCC--------
Confidence 5799999999999999994 4799999999876432 245689999999999999999999997654321
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
+.++. +..++++++.+||.+..|..+ +.|||||||||+|||+++.+| +
T Consensus 73 --~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p-~ 120 (325)
T TIGR01187 73 --PRAEI------------------------KPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKP-K 120 (325)
T ss_pred --CHHHH------------------------HHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCC-C
Confidence 00110 012567899999998888765 459999999999999999888 7
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|+|||||+|||+.+...+.+.|+++.++.|+|+|++.|.+ .++..++|+|++|.+|++++.|+++++.+
T Consensus 121 lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999876688999887765 47889999999999999999999988764
No 429
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=1.4e-26 Score=254.13 Aligned_cols=197 Identities=26% Similarity=0.352 Sum_probs=149.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh--------CCC--CCC---------ceeeEEEECCEeCcccc---
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLA--------GRK--TSG---------CFKGEIKVNGYPKIQET--- 700 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~--------g~~--~~~---------~~~G~i~~~g~~~~~~~--- 700 (1218)
..-|+|||..|+.|++++|.|+||||||||++.+. +.. .++ ...--|.++..|+....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 35699999999999999999999999999998552 110 010 01124677766542100
Q ss_pred -------c----------------c---ceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCC
Q 000937 701 -------F----------------V---RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL 754 (1218)
Q Consensus 701 -------~----------------~---~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 754 (1218)
+ . ..+.|..++......+||.|++.|...+. ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 0 0 01345555555567899999998865432 12346678999999
Q ss_pred Ccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Q 000937 755 DGI-KESLVGIPGVSGLSTEQRKRLTIGVELVAN---PSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPS 830 (1218)
Q Consensus 755 ~~~-~~~~~~~~~~~~LSgGerqRv~ia~~L~~~---p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 830 (1218)
... .+.. ..+||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|||+++|+++
T Consensus 159 ~~l~l~~~-----~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcCc-----cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 763 4444 358999999999999999996 7999999999999999999999999999888999999999874
Q ss_pred HHHHHhhceEEEEe-----cCCEEEEEcCC
Q 000937 831 IDIFESFDELILLK-----TGGRIIYSGPL 855 (1218)
Q Consensus 831 ~~~~~~~d~~~~l~-----~~G~~~~~g~~ 855 (1218)
..+.+|+++.|. ++|++++.|++
T Consensus 234 --~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 --VIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred --HHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 457899999993 47999999874
No 430
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.94 E-value=3.5e-27 Score=258.11 Aligned_cols=182 Identities=31% Similarity=0.517 Sum_probs=149.2
Q ss_pred CCCCCCCCcchhhccccee------EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL------VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~------~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.....++.++||+|++.+++.+||+||+.|++........
T Consensus 38 l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~--- 114 (226)
T cd03234 38 ILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKS--- 114 (226)
T ss_pred EECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhccccc---
Confidence 6799999999999999984 4799999999876544566789999999999999999999997654321100
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHH-HHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDY-NLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~-vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
. .... ....+. .++.+++.+..|+.+ +.|||||||||+|||+++.+
T Consensus 115 ~----~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~ 161 (226)
T cd03234 115 S----DAIR------------------------KKRVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSIAVQLLWD 161 (226)
T ss_pred c----hHHH------------------------HHHHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHHHHHHHhC
Confidence 0 0000 001233 688888887777654 46999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
| +||+|||||+|||+.+...+.+.++++++ .++|+|++.|++..++.+.+|++++|.+|+++++|
T Consensus 162 p-~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 162 P-KVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred C-CEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 7 89999999999999999999999999875 47899999999988999999999999999999876
No 431
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.94 E-value=3.1e-27 Score=271.38 Aligned_cols=185 Identities=28% Similarity=0.343 Sum_probs=156.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|.++|.++.+. ..++.++||+|+..+++.+||+|++.|.+.+.+..
T Consensus 72 LlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~------ 145 (340)
T PRK13536 72 LLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS------ 145 (340)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC------
Confidence 6799999999999999994 579999999987643 23567899999999999999999999866543210
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
..+. ...++.+++.+||.+..|+.++ .||||||||++||++++.+|
T Consensus 146 ----~~~~------------------------~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~lA~aL~~~P- 191 (340)
T PRK13536 146 ----TREI------------------------EAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTLARALINDP- 191 (340)
T ss_pred ----HHHH------------------------HHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHHHHHHhcCC-
Confidence 1110 0124567899999999998875 59999999999999998888
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++|+|||||+|||+.+...+++.|+++++ .|+|||++-|.. .++-+.+|+|++|++|+++++|+++++..
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 89999999999999999999999999975 589999997754 57889999999999999999999999875
No 432
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.7e-27 Score=264.25 Aligned_cols=186 Identities=25% Similarity=0.327 Sum_probs=153.6
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc-------cceEEeeccccccCCCCCHHHHHHHHhhccCCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-------QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~-------~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+... ++.++||+|++.+++.+||+|++.+....++..
T Consensus 55 l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~- 133 (269)
T cd03294 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP- 133 (269)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCC-
Confidence 6799999999999999995 47999999998764321 245899999999999999999999875433100
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
..+. ...++++++.+||.+..|+.++ .|||||||||+|||++
T Consensus 134 ---------~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral 175 (269)
T cd03294 134 ---------RAER------------------------EERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARAL 175 (269)
T ss_pred ---------HHHH------------------------HHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHH
Confidence 0000 0124677899999988888764 5999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+.+| +||+|||||+|||..+...+.+.|+++++..|+|+|++.|++. ++...+|++++|.+|+++++|+++++.+
T Consensus 176 ~~~p-~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 176 AVDP-DILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred hcCC-CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 9888 8999999999999999999999999998656889999887654 6778899999999999999999887753
No 433
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.5e-27 Score=228.04 Aligned_cols=211 Identities=21% Similarity=0.288 Sum_probs=162.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+..+|++.++....+ ..-+.++++|+|++++.||++++=||||+||||||++|-|-+.++ +|+|.+.-..
T Consensus 4 ~l~v~~~~KtFtlH~q-------~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d--~G~I~v~H~g 74 (235)
T COG4778 4 PLNVSNVSKTFTLHQQ-------GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD--EGQILVRHEG 74 (235)
T ss_pred eeeeecchhheEeeec-------CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC--CceEEEEeCc
Confidence 3556677665533211 112457999999999999999999999999999999999977764 8999886432
Q ss_pred --C-----cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccC
Q 000937 696 --K-----IQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764 (1218)
Q Consensus 696 --~-----~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 764 (1218)
+ .. ...++.+|||.|.-...|..+..|-++-.+.-+ ....+...+++.+++..|++.+..=.+.
T Consensus 75 ~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~La-- 149 (235)
T COG4778 75 EWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSLA-- 149 (235)
T ss_pred chhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcCC--
Confidence 1 11 123456899999888888887777665443322 3445666777889999999875332221
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHH-HhhceEEEE
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIF-ESFDELILL 843 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~-~~~d~~~~l 843 (1218)
+.+.||||+|||.|||.++.|-+||+|||||+.||..++..++++|++-+.+|..+|=+-||- ++- ..+||++-+
T Consensus 150 --PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe--evre~vadR~~~~ 225 (235)
T COG4778 150 --PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE--EVREAVADRLLDV 225 (235)
T ss_pred --CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH--HHHHHHhhheeec
Confidence 358999999999999999999999999999999999999999999999888899999999973 443 356887766
Q ss_pred e
Q 000937 844 K 844 (1218)
Q Consensus 844 ~ 844 (1218)
.
T Consensus 226 ~ 226 (235)
T COG4778 226 S 226 (235)
T ss_pred c
Confidence 4
No 434
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.8e-27 Score=274.33 Aligned_cols=186 Identities=23% Similarity=0.331 Sum_probs=155.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc-------cceEEeeccccccCCCCCHHHHHHHHhhccCCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-------QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~-------~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+... ++.++||+|+..+++.+||+||+.|..+.++..
T Consensus 59 LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~- 137 (400)
T PRK10070 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGIN- 137 (400)
T ss_pred EECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCC-
Confidence 6799999999999999995 47999999998865321 246899999999999999999999986544210
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
.++. ...++++++.+||.+..|..+ +.|||||||||+|||++
T Consensus 138 ---------~~~~------------------------~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL 179 (400)
T PRK10070 138 ---------AEER------------------------REKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARAL 179 (400)
T ss_pred ---------HHHH------------------------HHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHH
Confidence 1111 012467899999998888765 45999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+.+| +||+|||||+|||+.+...+++.|+++.++.++|||++.|.+ .++..++|+|++|.+|++++.|+++++..
T Consensus 180 ~~~P-~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 180 AINP-DILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred hcCC-CEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 9888 799999999999999999999999999866688999888765 46788999999999999999999987753
No 435
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.94 E-value=3.9e-27 Score=259.85 Aligned_cols=194 Identities=21% Similarity=0.293 Sum_probs=152.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc----cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP----QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~----~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+... +..++||+|++.+++.+||+|++.+............
T Consensus 31 l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~ 110 (236)
T cd03219 31 LIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLL 110 (236)
T ss_pred EECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccccccc
Confidence 6799999999999999995 47999999998765331 2358999999999999999999998754321000000
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
........+ ....++++++.+||++..|+.+ +.|||||||||+|||+++.+
T Consensus 111 ~~~~~~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~ 161 (236)
T cd03219 111 ARARREERE------------------------ARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATD 161 (236)
T ss_pred ccccccHHH------------------------HHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcC
Confidence 000000000 0113567889999988777765 45999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
| ++++|||||+|||..+...+.+.|+++++ .|+|+|++-|++. ++...+|++++|.+|++++.|+++++.
T Consensus 162 p-~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 162 P-KLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred C-CEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 7 79999999999999999999999999986 6889888877654 667889999999999999999988764
No 436
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.94 E-value=3.7e-27 Score=233.43 Aligned_cols=180 Identities=22% Similarity=0.311 Sum_probs=151.7
Q ss_pred CCCCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000937 2 SSLNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVG 72 (1218)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~ 72 (1218)
-.|.|.+||||||+.+...+ ...|+|++||+++.... .|+.+|+|.||-.+++..||.||..|+.+..+..
T Consensus 31 ~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~ 110 (223)
T COG2884 31 VFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKP 110 (223)
T ss_pred EEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCC
Confidence 35789999999999998887 46799999999998653 4788999999999999999999999999887632
Q ss_pred CchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHH
Q 000937 73 SRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGRE 152 (1218)
Q Consensus 73 ~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~e 152 (1218)
+++. +..|.++|+..||.|.++.. ...|||||+|||+||||
T Consensus 111 ----------~~~i------------------------~~rV~~~L~~VgL~~k~~~l-----P~~LSGGEQQRvaIARA 151 (223)
T COG2884 111 ----------PREI------------------------RRRVSEVLDLVGLKHKARAL-----PSQLSGGEQQRVAIARA 151 (223)
T ss_pred ----------HHHH------------------------HHHHHHHHHHhccchhhhcC-----ccccCchHHHHHHHHHH
Confidence 1221 12467889999999999854 46799999999999999
Q ss_pred HhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhc-cceEEEEcCCcEEEecC
Q 000937 153 MLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHL-FDDIILMAEGKILYHGP 224 (1218)
Q Consensus 153 ll~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~l-FD~IlvL~~G~ivy~G~ 224 (1218)
++-+| ++|+-||||-.||+..+.+|++.+.++.+ .|+||+++.| ..+++.. =-+++.|++|+++....
T Consensus 152 iV~~P-~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATH--d~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 152 IVNQP-AVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATH--DLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HccCC-CeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEec--cHHHHHhccCcEEEEeCCEEEeccc
Confidence 87776 89999999999999999999999999986 6999999975 3455554 45899999999987654
No 437
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.5e-27 Score=255.87 Aligned_cols=179 Identities=24% Similarity=0.332 Sum_probs=146.7
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+.. .++.++||+|++.+++.+||+|++.++....+.
T Consensus 31 i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-------- 102 (213)
T cd03259 31 LLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGV-------- 102 (213)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCC--------
Confidence 6799999999999999995 5799999999876432 245689999999999999999999987543210
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
...+. ...++.+++.+||.+..|..++ .||||||||++|||+++.+| +
T Consensus 103 --~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p-~ 150 (213)
T cd03259 103 --PKAEI------------------------RARVRELLELVGLEGLLNRYPH-----ELSGGQQQRVALARALAREP-S 150 (213)
T ss_pred --CHHHH------------------------HHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCC-C
Confidence 00000 0124667899999888887664 59999999999999999887 7
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
|++|||||+|||+.+...+++.|++++++.|+|||++-|.+ .++...+|++++|.+|++++.|
T Consensus 151 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 151 LLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999865688998887765 4677889999999999999876
No 438
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.94 E-value=3.7e-27 Score=268.78 Aligned_cols=185 Identities=29% Similarity=0.351 Sum_probs=153.7
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|.++|.++... ..++.++||+|++.+++.+||+|++.+.+...+.
T Consensus 35 l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~------- 107 (303)
T TIGR01288 35 LLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM------- 107 (303)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCC-------
Confidence 6799999999999999994 479999999987532 1345689999999999999999999976543210
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
+.++. ...++.+++.+||.+..|+.++ .|||||||||+||++++.+|
T Consensus 108 ---~~~~~------------------------~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p- 154 (303)
T TIGR01288 108 ---STREI------------------------EAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLTLARALINDP- 154 (303)
T ss_pred ---CHHHH------------------------HHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCC-
Confidence 00000 0124567899999998888764 59999999999999998887
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++|+|||||+|||+.+...+.+.|+++++ .|+|||++-|++. ++...+|+|++|.+|++++.|+++++..
T Consensus 155 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 89999999999999999999999999975 5889999887654 7778899999999999999999998864
No 439
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.3e-27 Score=258.92 Aligned_cols=185 Identities=25% Similarity=0.316 Sum_probs=152.7
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.... .++.++||+|++.+++.+||+||+.+.+..++..
T Consensus 36 l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~-- 113 (233)
T cd03258 36 IIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVP-- 113 (233)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCC--
Confidence 6799999999999999995 4799999999876432 2456899999999999999999999875433110
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
..+. ...++.+++.+||.+..+..+ +.|||||||||+|||+++
T Consensus 114 --------~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 114 --------KAEI------------------------EERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALA 156 (233)
T ss_pred --------HHHH------------------------HHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHh
Confidence 0000 012467799999988877765 469999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
.+| ++++|||||+|||+.+...+.+.|+++++..|+|+|++.|++ .++...+|++++|.+|++++.|+.+++.
T Consensus 157 ~~p-~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 157 NNP-KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred cCC-CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 887 799999999999999999999999999876688999988875 4667889999999999999999987764
No 440
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=5.3e-27 Score=233.82 Aligned_cols=187 Identities=21% Similarity=0.327 Sum_probs=161.1
Q ss_pred CCCCCCCCcchhhcccceeE---EEEEEECCcccCCccc----cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGLV---TGEVSYNGYKLEEFVP----QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~~---~G~V~~nG~~~~~~~~----~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|+|++||||||.=....|.+ +|.|.+||.|++.+-. |.-+||.|||...|-.|||+||++-..+.+..+.+
T Consensus 35 LLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~-- 112 (243)
T COG1137 35 LLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLK-- 112 (243)
T ss_pred EECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchh--
Confidence 78999999999999888865 6999999999997643 23468999999999999999999998877632111
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
.+++ +...+.+|++|+|.|++|..- -.||||||||+-|||+|..+
T Consensus 113 ------~~~~------------------------~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 113 ------KAER------------------------KEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAAN 157 (243)
T ss_pred ------HHHH------------------------HHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcC
Confidence 0111 123578999999999999864 34999999999999999998
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
| +.++||||-+|.||.+-.+|.+.++.+.. +|.-|++|=|.-+ |+....||.+++++|+++.+|+++++.+
T Consensus 158 P-~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 158 P-KFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred C-CEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 8 89999999999999999999999999986 5899999988776 8999999999999999999999999885
No 441
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.9e-27 Score=255.98 Aligned_cols=180 Identities=26% Similarity=0.363 Sum_probs=149.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLE 80 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~~ 80 (1218)
|.|++|||||||.+...|. .+|+|.++|.++.. .++.++||+|++.+++.+||+|++.+....++..
T Consensus 35 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~-------- 104 (220)
T cd03293 35 LVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVP-------- 104 (220)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcCCC--------
Confidence 6799999999999999995 47999999998764 3456899999999999999999999875543210
Q ss_pred hhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCceE
Q 000937 81 LSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKA 160 (1218)
Q Consensus 81 ~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~I 160 (1218)
..+. ...++.+++.+||.+..+..+ +.||||||||++|||+++.+| ++
T Consensus 105 --~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p-~l 152 (220)
T cd03293 105 --KAEA------------------------RERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDP-DV 152 (220)
T ss_pred --HHHH------------------------HHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCC-CE
Confidence 0000 012467789999988878765 459999999999999999888 79
Q ss_pred EEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEc--CCcEEEecChh
Q 000937 161 MFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMA--EGKILYHGPRE 226 (1218)
Q Consensus 161 LlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~--~G~ivy~G~~~ 226 (1218)
++|||||+|||+.+...+++.|+++.+..++|||++-|++. ++...+|++++|. +|++++.++.+
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 99999999999999999999999987656889998887654 6678899999999 79999998764
No 442
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5e-27 Score=255.94 Aligned_cols=184 Identities=28% Similarity=0.319 Sum_probs=151.0
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|++||.++... ..++.++||+|+..+++.+||+|++.+..+.++..
T Consensus 31 i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~------ 104 (220)
T cd03265 31 LLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP------ 104 (220)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCC------
Confidence 6799999999999999995 579999999877532 22456899999999999999999999875443210
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
.++. ...++.+++.+||++..|+.++ .|||||||||+||++++.+|
T Consensus 105 ----~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~la~al~~~p- 150 (220)
T cd03265 105 ----GAER------------------------RERIDELLDFVGLLEAADRLVK-----TYSGGMRRRLEIARSLVHRP- 150 (220)
T ss_pred ----HHHH------------------------HHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCC-
Confidence 0000 0124677999999988887764 59999999999999999888
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESV 228 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l 228 (1218)
++++|||||+|||+.+...+.+.|++++++.++|+|++-|.+. ++...+|++++|.+|++++.|+++++
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 151 EVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 7999999999999999999999999998655788888877544 67788999999999999999987753
No 443
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.94 E-value=5.3e-27 Score=258.09 Aligned_cols=184 Identities=22% Similarity=0.322 Sum_probs=151.5
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV----PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~----~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|++||.++.... .++.++||+|++.+++.+||+|++.+....++.
T Consensus 31 l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----- 105 (232)
T cd03218 31 LLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGL----- 105 (232)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCC-----
Confidence 6799999999999999995 5799999999875432 134589999999999999999999986433210
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
...+. ...++.+++.+||.+..++.+ +.|||||||||+||++++.+
T Consensus 106 -----~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 106 -----SKKER------------------------EEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATN 151 (232)
T ss_pred -----CHHHH------------------------HHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcC
Confidence 00000 112467889999988888765 45999999999999999888
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
| ++|+|||||+|||+.+...+.+.|+++++ .++|+|++-|++. ++...+|++++|++|++++.|+.+++.
T Consensus 152 p-~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 152 P-KFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred C-CEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 7 89999999999999999999999999875 5788888877654 788999999999999999999988764
No 444
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.2e-27 Score=263.62 Aligned_cols=186 Identities=27% Similarity=0.374 Sum_probs=150.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-----cccceEEeecccc-ccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-----VPQKLSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-----~~~~~~~yV~Q~D-~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+. ..++.++||+|++ ..+...||+|++.|.....+.
T Consensus 38 i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~--- 114 (287)
T PRK13637 38 LIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL--- 114 (287)
T ss_pred EECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCC---
Confidence 6799999999999999995 579999999988642 2345789999985 234457999999986543210
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCc--ccccceecCCcCCcCCccccchhhHHHH
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD--ICADTLVGDAIRRGISGGQKRRLTTGRE 152 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~--~~~dT~VG~~~~rGLSGGeKrRvSIA~e 152 (1218)
++++. ...++++++.+||. +..|+.+ +.||||||||++|||+
T Consensus 115 -------~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~~~-----~~LSgGq~qrv~iAra 158 (287)
T PRK13637 115 -------SEEEI------------------------ENRVKRAMNIVGLDYEDYKDKSP-----FELSGGQKRRVAIAGV 158 (287)
T ss_pred -------CHHHH------------------------HHHHHHHHHHcCCCchhhccCCc-----ccCCHHHHHHHHHHHH
Confidence 11111 11356789999997 5666654 5699999999999999
Q ss_pred HhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 153 MLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 153 ll~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++.+| +||+|||||+|||+.+...+++.|+++++..|+|||++.|.+ .++...+|+|++|++|++++.|+++++.+
T Consensus 159 L~~~P-~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 159 VAMEP-KILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHcCC-CEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 98888 799999999999999999999999999876688999988865 46678899999999999999999988753
No 445
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.94 E-value=3.9e-27 Score=258.21 Aligned_cols=183 Identities=21% Similarity=0.281 Sum_probs=147.8
Q ss_pred CCCCCCCCcchhhcccceeE--------EEEEEECCcccCCcc-----ccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000937 4 LNDRIGFGLSVISWFCTGLV--------TGEVSYNGYKLEEFV-----PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQG 70 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~~--------~G~V~~nG~~~~~~~-----~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~ 70 (1218)
|.|++|||||||.+...|.. +|+|+++|.++.+.. .++.++||+|++.++ .+||+||+.++....+
T Consensus 31 i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~ 109 (227)
T cd03260 31 LIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG 109 (227)
T ss_pred EECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC
Confidence 67999999999999999865 699999999876432 245689999998888 7999999998755331
Q ss_pred CCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHH
Q 000937 71 VGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTG 150 (1218)
Q Consensus 71 ~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA 150 (1218)
.. ...+. ...++++++.+||.+..+..+. .+.||||||||++||
T Consensus 110 ~~---------~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la 153 (227)
T cd03260 110 IK---------LKEEL------------------------DERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLA 153 (227)
T ss_pred CC---------cHHHH------------------------HHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHH
Confidence 00 00000 0124677899999887776531 256999999999999
Q ss_pred HHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhh
Q 000937 151 REMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRES 227 (1218)
Q Consensus 151 ~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~ 227 (1218)
|+++.+| ++|+|||||+|||+.+...+++.|+++++ . +|+|++.|++. ++...+|++++|.+|++++.|++++
T Consensus 154 ~al~~~p-~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 154 RALANEP-EVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHhcCC-CEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999887 79999999999999999999999999976 3 78888877654 6778899999999999999999875
No 446
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=1.6e-26 Score=294.20 Aligned_cols=205 Identities=24% Similarity=0.415 Sum_probs=169.6
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|.+++-+.+ ...+.|+|||++|++|+++||+||-|||||+||.+|.|..+. .+|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~~-----------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~--~sG~v~v~gs 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE-----------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK--LSGSVAVNGS 583 (1381)
T ss_pred ceEEEeeeeEecCCC-----------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc--ccceEEEcCe
Confidence 457889988876431 123489999999999999999999999999999999997765 5899999984
Q ss_pred eCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccCCCC
Q 000937 695 PKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGIPGV 767 (1218)
Q Consensus 695 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~ 767 (1218)
++||+|++-++. -|||||+.|+.. -.+++.+++++...|.+ ...|.+|..|+
T Consensus 584 ----------iaYv~Q~pWI~n-gTvreNILFG~~----------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi 642 (1381)
T KOG0054|consen 584 ----------VAYVPQQPWIQN-GTVRENILFGSP----------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGI 642 (1381)
T ss_pred ----------EEEeccccHhhC-CcHHHhhhcCcc----------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc
Confidence 799999988764 699999999632 12345666776665543 33466888776
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
+||||||||+++|||+-+|++|++||.|.|++|++..+++.+..-+-.-+++|+|++|||. +..+.+|.+++|+ +|
T Consensus 643 -nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~-~G 718 (1381)
T KOG0054|consen 643 -NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLK-DG 718 (1381)
T ss_pred -CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEec-CC
Confidence 6999999999999999999999999999999999999999865444444689999999985 6789999999998 69
Q ss_pred EEEEEcCCCC
Q 000937 848 RIIYSGPLGN 857 (1218)
Q Consensus 848 ~~~~~g~~~~ 857 (1218)
++...|+.++
T Consensus 719 ~I~~~Gty~e 728 (1381)
T KOG0054|consen 719 KIVESGTYEE 728 (1381)
T ss_pred eEecccCHHH
Confidence 9999999864
No 447
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.6e-27 Score=258.76 Aligned_cols=185 Identities=26% Similarity=0.330 Sum_probs=151.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.... .++.++||+|++.+++.+||+||+.+..+..+..
T Consensus 32 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----- 106 (242)
T cd03295 32 LIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWP----- 106 (242)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCC-----
Confidence 6799999999999999995 4799999999876432 2456799999999999999999999875432110
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcc--cccceecCCcCCcCCccccchhhHHHHHhh
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDI--CADTLVGDAIRRGISGGQKRRLTTGREMLV 155 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~--~~dT~VG~~~~rGLSGGeKrRvSIA~ell~ 155 (1218)
..+. ...+.++++.+||.+ ..|..+ +.|||||||||+|||+++.
T Consensus 107 -----~~~~------------------------~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 107 -----KEKI------------------------RERADELLALVGLDPAEFADRYP-----HELSGGQQQRVGVARALAA 152 (242)
T ss_pred -----HHHH------------------------HHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHHHHHHHHhc
Confidence 0000 012467789999985 556544 5699999999999999998
Q ss_pred CCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 156 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 156 ~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
+| ++++|||||+|||+.+...+.+.|+++++..|+|+|++.|++. ++...+|+|++|.+|++++.|+++++.
T Consensus 153 ~p-~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 153 DP-PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred CC-CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 88 7999999999999999999999999998655889999888764 667889999999999999999988764
No 448
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6.6e-26 Score=254.92 Aligned_cols=198 Identities=21% Similarity=0.276 Sum_probs=148.9
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
+..+.+.++++.++.. +. +++.+++..++.-+-.+++|+||+||||++|++.|...| ..|.+.+++
T Consensus 360 ~p~l~i~~V~f~y~p~-----------~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~ 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPS-----------EY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP 425 (582)
T ss_pred CCeeEEEeeeccCCCc-----------ch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc
Confidence 4567888888776421 11 688999999999999999999999999999999996654 367765543
Q ss_pred EeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCH
Q 000937 694 YPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGIPGVSGLST 772 (1218)
Q Consensus 694 ~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSg 772 (1218)
+.+++|..|...-+..+.|.+- .+-..++ +.. .++.+++-+..+||+.- +... +.+|||
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~--pG~----~~ee~r~hl~~~Gl~g~la~~s-----i~~LSG 485 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF--PGK----TEEEIRRHLGSFGLSGELALQS-----IASLSG 485 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHHH-HHHHHhC--CCC----CHHHHHHHHHhcCCCchhhhcc-----ccccCC
Confidence 4568888887655545555443 3333222 111 23446678889999742 2222 458999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||-||++|.....+|.+|+|||||+.||-.+-..+.+.|+.. +..||++||+.+ -+-..|+.+.+.. +|++.
T Consensus 486 GQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve-~g~vt 558 (582)
T KOG0062|consen 486 GQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVE-DGKVT 558 (582)
T ss_pred cchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEc-CCcEE
Confidence 9999999999999999999999999999999999988888875 458999999854 3455688888887 57765
No 449
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=6.1e-27 Score=241.43 Aligned_cols=186 Identities=23% Similarity=0.362 Sum_probs=154.3
Q ss_pred CCCCCCCCCcchhhccccee---EEEEEEECCcccCCccc----cceEEeeccccccCCCCCHHHHHHHHhhccCCCCch
Q 000937 3 SLNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP----QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRA 75 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~----~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~ 75 (1218)
.|.||+||||||+.+..+|. .+|+|.++|.|++.... |.-++||||..-.||.|||+|||..++..+..
T Consensus 33 ~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~---- 108 (237)
T COG0410 33 ALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD---- 108 (237)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----
Confidence 47899999999999999994 47999999999996542 35578999999999999999999987654310
Q ss_pred hhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhC-CcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 76 DILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILG-LDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 76 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lg-L~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
++.++ ...|.+.+.|= |..-++.+-|+ |||||+|=++|||+|+
T Consensus 109 -------~~~~~------------------------~~~e~v~~lFP~Lker~~~~aG~-----LSGGEQQMLAiaRALm 152 (237)
T COG0410 109 -------KEAQE------------------------RDLEEVYELFPRLKERRNQRAGT-----LSGGEQQMLAIARALM 152 (237)
T ss_pred -------ccccc------------------------ccHHHHHHHChhHHHHhcCcccC-----CChHHHHHHHHHHHHh
Confidence 00000 00244444443 55666777665 9999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
.+| ++|+|||||.||-|.-..+|.++++++.++.|.||+.. .|--....+.+|+.+||..|++++.|+.+++.+
T Consensus 153 ~~P-klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLV-EQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 153 SRP-KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLV-EQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred cCC-CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEE-eccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 998 99999999999999999999999999998777777775 899999999999999999999999999999885
No 450
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.94 E-value=7.2e-27 Score=253.55 Aligned_cols=179 Identities=24% Similarity=0.325 Sum_probs=148.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|.++|.++.... .++.++||+|++.+++.+||+|++.+.++.++..
T Consensus 31 l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~------- 103 (213)
T cd03301 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP------- 103 (213)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCC-------
Confidence 6799999999999999995 4799999999876432 2346899999999999999999999875433100
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
.++. ...++.+++.+||.+..|..++ .||||||||++|||+++.+| +
T Consensus 104 ---~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~laral~~~p-~ 150 (213)
T cd03301 104 ---KDEI------------------------DERVREVAELLQIEHLLDRKPK-----QLSGGQRQRVALGRAIVREP-K 150 (213)
T ss_pred ---HHHH------------------------HHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHHHHHHHHHhcCC-C
Confidence 0000 0124677899999988887764 59999999999999998887 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
+++|||||+|||+.+...+.+.|++++++.++|+|++.|++ .++...+|+|++|.+|+++++|
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 151 VFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999876688999998876 3667789999999999999887
No 451
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.6e-27 Score=271.20 Aligned_cols=180 Identities=27% Similarity=0.396 Sum_probs=153.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-------cccceEEeeccccccCCCCCHHHHHHHHhhccCCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-------VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-------~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+. ..++.++||+|+..++|.+||+||+.|..+-
T Consensus 29 l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~----- 103 (352)
T PRK11144 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK----- 103 (352)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh-----
Confidence 6799999999999999995 479999999887531 1245689999999999999999999985320
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
.. ...++++++.+||++..|..+ +.|||||||||+|||++
T Consensus 104 -----------~~------------------------~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL 143 (352)
T PRK11144 104 -----------SM------------------------VAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRAL 143 (352)
T ss_pred -----------hh------------------------HHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHH
Confidence 00 012467799999998888765 45999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+.+| ++|+|||||+|||+.+...+.+.|++++++.++|+|++-|.+ .++..++|++++|.+|+++++|+++++..
T Consensus 144 ~~~p-~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 144 LTAP-ELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred HcCC-CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9888 899999999999999999999999999876688888887765 47889999999999999999999998864
No 452
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.7e-27 Score=243.86 Aligned_cols=185 Identities=25% Similarity=0.298 Sum_probs=153.5
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc----ccceEEeecccc--ccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV----PQKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~----~~~~~~yV~Q~D--~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
+.|++|||||||+...-| ..+|+|+++|.+..... .++.+-+|.||+ .+-|..||++.|.=+.+..+..
T Consensus 38 ivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~-- 115 (252)
T COG1124 38 IVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLS-- 115 (252)
T ss_pred EEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCcc--
Confidence 568999999999999998 46799999998877643 456788999997 6789999999998776653211
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
..++ .+.++++.+||....=. .+...|||||||||+|||||.
T Consensus 116 --------~~~~--------------------------~i~~~L~~VgL~~~~l~----R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 116 --------KSQQ--------------------------RIAELLDQVGLPPSFLD----RRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred --------HHHH--------------------------HHHHHHHHcCCCHHHHh----cCchhcChhHHHHHHHHHHhc
Confidence 1111 14677899999864332 234569999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
.+| ++|+||||||+||+...-+|++.|.++.+..+.|.++.-| -..-+..++|||+||.+|++++.+|..++.+
T Consensus 158 ~~P-klLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsH-dl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 158 PEP-KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH-DLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred cCC-CEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeC-cHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 998 8999999999999999999999999999888888888755 4556788999999999999999999999886
No 453
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=7.3e-27 Score=258.64 Aligned_cols=193 Identities=22% Similarity=0.302 Sum_probs=151.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+.. .++.++||+|++.+++.+||+|++.++...... ..
T Consensus 32 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~ 110 (241)
T cd03256 32 LIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRS-TW 110 (241)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccch-hh
Confidence 6799999999999999985 4799999999876432 245689999999999999999999886431100 00
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
.... .....+ ....++.+++.+||.+..+..+ +.|||||||||+|||+++
T Consensus 111 ~~~~-~~~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 111 RSLF-GLFPKE------------------------EKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALM 160 (241)
T ss_pred hhhc-ccCcHH------------------------HHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHh
Confidence 0000 000000 0112466789999987777654 469999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
.+| +||+|||||+|||+.+...+.+.|++++++.|+|||++.|++. ++...+|++++|.+|++++.|+++++.
T Consensus 161 ~~p-~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 161 QQP-KLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred cCC-CEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 887 7999999999999999999999999998666889999888655 567799999999999999999988764
No 454
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.94 E-value=7.2e-27 Score=271.40 Aligned_cols=184 Identities=25% Similarity=0.408 Sum_probs=153.8
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-------cccceEEeeccccccCCCCCHHHHHHHHhhccCCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-------VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-------~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
|.|++|||||||.+...|. .+|+|++||.++... ..++.++||+|++.+++.+||+||+.|+.+...
T Consensus 28 l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~--- 104 (354)
T TIGR02142 28 IFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRAR--- 104 (354)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhccC---
Confidence 6799999999999999995 479999999887532 124568999999999999999999998653210
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
..+. ...++++++.+||++..|..+ +.|||||||||+|||++
T Consensus 105 ---------~~~~------------------------~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL 146 (354)
T TIGR02142 105 ---------PSER------------------------RISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRAL 146 (354)
T ss_pred ---------hhHH------------------------HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHH
Confidence 0000 012467899999998888765 45999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+.+| ++|+|||||+|||+.+...+.+.|++++++.|+|+|++.|++. ++..++|+|++|.+|++++.|+++++..
T Consensus 147 ~~~p-~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 147 LSSP-RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred HcCC-CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 9888 7999999999999999999999999998766889888887654 6788899999999999999999988764
No 455
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=9e-27 Score=263.72 Aligned_cols=184 Identities=21% Similarity=0.294 Sum_probs=149.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-------cccceEEeecccc--ccCCCCCHHHHHHHHhhccCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-------VPQKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGV 71 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-------~~~~~~~yV~Q~D--~l~~~LTVrEtL~Faa~lk~~ 71 (1218)
|.|++|||||||.+...|. .+|+|.+||.++... ..++.++||+|++ .++ ..||+||+.|..+..+.
T Consensus 38 i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~ 116 (290)
T PRK13634 38 IIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGV 116 (290)
T ss_pred EECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCC
Confidence 6799999999999999995 579999999987521 2245689999985 344 47999999987543211
Q ss_pred CCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCc-ccccceecCCcCCcCCccccchhhHH
Q 000937 72 GSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD-ICADTLVGDAIRRGISGGQKRRLTTG 150 (1218)
Q Consensus 72 ~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGeKrRvSIA 150 (1218)
+.++. ...++.+++.+||. +..|+.+ +.|||||||||+||
T Consensus 117 ----------~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~lA 157 (290)
T PRK13634 117 ----------SEEDA------------------------KQKAREMIELVGLPEELLARSP-----FELSGGQMRRVAIA 157 (290)
T ss_pred ----------CHHHH------------------------HHHHHHHHHHCCCChhhhhCCc-----ccCCHHHHHHHHHH
Confidence 01110 01356789999997 5677665 45999999999999
Q ss_pred HHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 151 REMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 151 ~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
|+++.+| +||+|||||+|||+.+...+++.|++++++.|+|||++.|.+. ++...+|+|++|++|++++.|+++++.
T Consensus 158 raL~~~P-~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 158 GVLAMEP-EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HHHHcCC-CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999888 8999999999999999999999999998766889999887655 677889999999999999999988764
No 456
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.94 E-value=7.7e-27 Score=265.71 Aligned_cols=184 Identities=23% Similarity=0.329 Sum_probs=155.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+. ..++.++||+|++.+++.+||+|+|.|.+++.+..
T Consensus 33 l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~------ 106 (301)
T TIGR03522 33 FLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK------ 106 (301)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC------
Confidence 6899999999999999995 589999999987642 23456899999999999999999999987654310
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
+++. ...++.+++.+||.+..|..++ .|||||||||+||++++.+|
T Consensus 107 ----~~~~------------------------~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~al~~~p- 152 (301)
T TIGR03522 107 ----GQLL------------------------KQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVGLAQALIHDP- 152 (301)
T ss_pred ----HHHH------------------------HHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHHHHHHHhcCC-
Confidence 1110 0124678999999999988764 59999999999999998888
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++|+|||||+|||+.+...+++.|+++++ ++|||++-|++ .++-+++|+|++|++|++++.|+.+++..
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 89999999999999999999999999863 68888887754 47888999999999999999999999875
No 457
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=9.8e-27 Score=255.88 Aligned_cols=181 Identities=19% Similarity=0.300 Sum_probs=147.5
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc-------cceEEeeccccccCCCCCHHHHHHHHhhccCCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-------QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~-------~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+... ++.++||+|+..+++.+||+||+.|.....+.
T Consensus 40 l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-- 117 (233)
T PRK11629 40 IVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKK-- 117 (233)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCC--
Confidence 6799999999999999995 58999999998865431 24589999999999999999999997543210
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
..++. ...++++++.+||++..++.+ +.||||||||++|||++
T Consensus 118 --------~~~~~------------------------~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrl~la~al 160 (233)
T PRK11629 118 --------KPAEI------------------------NSRALEMLAAVGLEHRANHRP-----SELSGGERQRVAIARAL 160 (233)
T ss_pred --------CHHHH------------------------HHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHH
Confidence 00010 012467789999988777765 45999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChh
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRE 226 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~ 226 (1218)
+.+| +||+|||||+|||+.+...+.+.|+++++..|+|+|++-|++. + ...+|++++|.+|++++.|+.-
T Consensus 161 ~~~p-~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~-~~~~~~~~~l~~G~i~~~~~~~ 230 (233)
T PRK11629 161 VNNP-RLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-L-AKRMSRQLEMRDGRLTAELSLM 230 (233)
T ss_pred hcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-H-HHhhCEEEEEECCEEEEEeccC
Confidence 9887 8999999999999999999999999987656889999888764 3 4457999999999999998753
No 458
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-26 Score=262.71 Aligned_cols=195 Identities=20% Similarity=0.312 Sum_probs=154.5
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-------cccceEEeecccc--ccCCCCCHHHHHHHHhhccCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-------VPQKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGV 71 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-------~~~~~~~yV~Q~D--~l~~~LTVrEtL~Faa~lk~~ 71 (1218)
+.|++|||||||.+...|. .+|+|++||.++... ..++.++||+|++ .+++ .||.|++.|..+..+.
T Consensus 37 i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~ 115 (288)
T PRK13643 37 LIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGI 115 (288)
T ss_pred EECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCC
Confidence 6799999999999999995 579999999987521 2345689999985 4555 6999999997653321
Q ss_pred CCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCc-ccccceecCCcCCcCCccccchhhHH
Q 000937 72 GSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD-ICADTLVGDAIRRGISGGQKRRLTTG 150 (1218)
Q Consensus 72 ~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGeKrRvSIA 150 (1218)
++.+. +..++++++.+||. +..+..+ +.||||||||++||
T Consensus 116 ----------~~~~~------------------------~~~~~~~l~~~~L~~~~~~~~~-----~~LSgGqkqrvaiA 156 (288)
T PRK13643 116 ----------PKEKA------------------------EKIAAEKLEMVGLADEFWEKSP-----FELSGGQMRRVAIA 156 (288)
T ss_pred ----------CHHHH------------------------HHHHHHHHHHcCCChhhccCCc-----ccCCHHHHHHHHHH
Confidence 01111 11356778999996 4556543 56999999999999
Q ss_pred HHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 151 REMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 151 ~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
|+++.+| +||+|||||+|||+.+...+.+.|+++++ .|+|||++.|.+ .++...+|+|++|.+|+++++|+++++.+
T Consensus 157 ~aL~~~p-~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 157 GILAMEP-EVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHhCC-CEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999888 79999999999999999999999999875 588999988765 56778999999999999999999998753
Q ss_pred ---HHHhCCCCCCC
Q 000937 231 ---FFESCGFRCPD 241 (1218)
Q Consensus 231 ---yF~~lG~~~p~ 241 (1218)
+++..|+.+|.
T Consensus 234 ~~~~~~~~~~~~p~ 247 (288)
T PRK13643 234 EVDFLKAHELGVPK 247 (288)
T ss_pred CHHHHHHcCCCCCh
Confidence 34556666555
No 459
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.94 E-value=7.6e-27 Score=254.69 Aligned_cols=182 Identities=27% Similarity=0.410 Sum_probs=149.6
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|++||.++... ..++.++||+|++.+++.+||+|++.+..+..+..
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~------ 106 (220)
T cd03263 33 LLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP------ 106 (220)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC------
Confidence 6799999999999999994 479999999987542 23456899999999999999999999875543210
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
.++. ...++++++.+||.+..++.++ .||||||||++|||+++.+|
T Consensus 107 ----~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p- 152 (220)
T cd03263 107 ----KSEI------------------------KEEVELLLRVLGLTDKANKRAR-----TLSGGMKRKLSLAIALIGGP- 152 (220)
T ss_pred ----HHHH------------------------HHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCC-
Confidence 0000 0124677899999888887764 59999999999999999887
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESV 228 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l 228 (1218)
++++|||||+|||+.+...+.+.|+++++ ++|+|++-|++. ++...+|++++|.+|++++.|+++++
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 89999999999999999999999999874 488888877655 56678999999999999999998764
No 460
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.94 E-value=3.5e-27 Score=299.65 Aligned_cols=187 Identities=22% Similarity=0.349 Sum_probs=154.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ +|+.++||+|++.+|+ .||+|||.++.. +
T Consensus 488 ivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~~----~----- 557 (694)
T TIGR01846 488 IVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCNP----G----- 557 (694)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCCC----C-----
Confidence 5689999999999999994 5799999999998764 4677899999998887 599999988421 0
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++++.++++.+..++++.+ |++..||.+|+. .+.||||||||++|||+++.+|
T Consensus 558 -------------~~~~~i~~a~~~~~l~~~i~~-----------lp~gl~t~i~~~-g~~LSgGq~qri~lARall~~~ 612 (694)
T TIGR01846 558 -------------APFEHVIHAAKLAGAHDFISE-----------LPQGYNTEVGEK-GANLSGGQRQRIAIARALVGNP 612 (694)
T ss_pred -------------CCHHHHHHHHHHcChHHHHHh-----------CcCccCcEecCC-CCCCCHHHHHHHHHHHHHHhCC
Confidence 011345556666655554443 345669999986 4679999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+|||||||||+.++..+.+.|+++. .++|+|++.|++ ++...+|+|++|++|+++++|+++++++
T Consensus 613 -~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~--~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 613 -RILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRL--STVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred -CEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCCh--HHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 7999999999999999999999999875 467888877766 5778899999999999999999999885
No 461
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.94 E-value=1.3e-26 Score=265.62 Aligned_cols=190 Identities=21% Similarity=0.263 Sum_probs=152.4
Q ss_pred CCCCCCCCcchhhcccceeE------EEEEEECCcccCCccc------c-ceEEeecccc--ccCCCCCHHHHHHHHhhc
Q 000937 4 LNDRIGFGLSVISWFCTGLV------TGEVSYNGYKLEEFVP------Q-KLSAYVSQYD--LHIPEMTVRETLDFSTYC 68 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~~------~G~V~~nG~~~~~~~~------~-~~~~yV~Q~D--~l~~~LTVrEtL~Faa~l 68 (1218)
|.|++|||||||.+...|.. +|+|.+||.++..... | +.++||+|++ .+.|.+||.|++.+....
T Consensus 47 ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~ 126 (330)
T PRK09473 47 IVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML 126 (330)
T ss_pred EECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHH
Confidence 67999999999999999853 8999999999865431 2 3689999997 788999999999876543
Q ss_pred cCCCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhh
Q 000937 69 QGVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLT 148 (1218)
Q Consensus 69 k~~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvS 148 (1218)
... .+.++. ...+.++++.+||.+..+. + +.+.+.|||||||||+
T Consensus 127 ~~~---------~~~~~~------------------------~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~QRv~ 171 (330)
T PRK09473 127 HKG---------MSKAEA------------------------FEESVRMLDAVKMPEARKR-M-KMYPHEFSGGMRQRVM 171 (330)
T ss_pred hcC---------CCHHHH------------------------HHHHHHHHHHcCCCChHHH-h-cCCcccCCHHHHHHHH
Confidence 210 001110 0124667888999764433 2 2456789999999999
Q ss_pred HHHHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhH
Q 000937 149 TGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESV 228 (1218)
Q Consensus 149 IA~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l 228 (1218)
|||+++.+| ++|++||||||||..+..++++.|+++.++.|+|+|++.|... .+..++|+|+||++|++++.|+++++
T Consensus 172 IArAL~~~P-~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i 249 (330)
T PRK09473 172 IAMALLCRP-KLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDV 249 (330)
T ss_pred HHHHHHcCC-CEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999988 8999999999999999999999999998766889988877654 55678999999999999999999988
Q ss_pred HH
Q 000937 229 LE 230 (1218)
Q Consensus 229 ~~ 230 (1218)
..
T Consensus 250 ~~ 251 (330)
T PRK09473 250 FY 251 (330)
T ss_pred Hh
Confidence 64
No 462
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.94 E-value=4.9e-27 Score=293.22 Aligned_cols=187 Identities=20% Similarity=0.322 Sum_probs=152.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ .|+.++||+|++.+|+ .|+||||.++.. +
T Consensus 366 IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~----~----- 435 (588)
T PRK13657 366 IVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGRP----D----- 435 (588)
T ss_pred EECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCCC----C-----
Confidence 5689999999999999995 5799999999988754 4567999999999886 599999988521 0
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++++..+++.+..+.++.+ |++..||.+|+. .+.||||||||++|||+++.+|
T Consensus 436 -------------~~d~~i~~al~~~~l~~~i~~-----------lp~gldt~i~~~-g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 436 -------------ATDEEMRAAAERAQAHDFIER-----------KPDGYDTVVGER-GRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred -------------CCHHHHHHHHHHhCHHHHHHh-----------CcccccchhcCC-CCCCCHHHHHHHHHHHHHhcCC
Confidence 011245555555554444433 455669999985 4569999999999999999888
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++||||||+||+.++..+.+.|+++. .++|+|++-|++ ++.+.+|+|++|.+|++++.|+++++++
T Consensus 491 -~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 491 -PILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRL--STVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred -CEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecH--HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 7999999999999999999999999875 367777777776 5789999999999999999999999874
No 463
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.5e-26 Score=264.14 Aligned_cols=195 Identities=22% Similarity=0.353 Sum_probs=150.9
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-------------------cccceEEeecccc--ccCCCCCHH
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-------------------VPQKLSAYVSQYD--LHIPEMTVR 59 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-------------------~~~~~~~yV~Q~D--~l~~~LTVr 59 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+. ..++.++||+|++ .+++ .||+
T Consensus 57 I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~ 135 (320)
T PRK13631 57 IIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIE 135 (320)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHH
Confidence 5799999999999999995 579999999887532 2346689999986 4665 5999
Q ss_pred HHHHHHhhccCCCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCc-ccccceecCCcCCc
Q 000937 60 ETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD-ICADTLVGDAIRRG 138 (1218)
Q Consensus 60 EtL~Faa~lk~~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~-~~~dT~VG~~~~rG 138 (1218)
|++.|.....+. +.++. ...++++++.+||. +..+.. .+.
T Consensus 136 eni~~~~~~~~~----------~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~-----~~~ 176 (320)
T PRK13631 136 KDIMFGPVALGV----------KKSEA------------------------KKLAKFYLNKMGLDDSYLERS-----PFG 176 (320)
T ss_pred HHHHhhHHhcCC----------CHHHH------------------------HHHHHHHHHHcCCChhHhcCC-----ccc
Confidence 999986532210 01110 01246678999996 455544 356
Q ss_pred CCccccchhhHHHHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCc
Q 000937 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGK 218 (1218)
Q Consensus 139 LSGGeKrRvSIA~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ 218 (1218)
|||||||||+|||+++.+| +||+|||||+|||+.++..+++.|+++++ .|+|||++.|.+. ++...+|+|++|.+|+
T Consensus 177 LSgGqkqRvaiAraL~~~p-~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~-~~~~~adri~vl~~G~ 253 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQP-EILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTME-HVLEVADEVIVMDKGK 253 (320)
T ss_pred CCHHHHHHHHHHHHHHcCC-CEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 9999999999999999888 79999999999999999999999999875 5889888877643 5678899999999999
Q ss_pred EEEecChhhHHH---HHHhCCCCCCC
Q 000937 219 ILYHGPRESVLE---FFESCGFRCPD 241 (1218)
Q Consensus 219 ivy~G~~~~l~~---yF~~lG~~~p~ 241 (1218)
+++.|+++++.. .++..|...|.
T Consensus 254 i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 254 ILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred EEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 999999987752 23444544433
No 464
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.1e-26 Score=251.57 Aligned_cols=177 Identities=22% Similarity=0.318 Sum_probs=146.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLE 80 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~~ 80 (1218)
|.|++|||||||.+...|. .+|+|++||.++.. ..++.++||+|+..+++.+||+|++.+..+.++..
T Consensus 31 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~-------- 101 (210)
T cd03269 31 LLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK-------- 101 (210)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCC--------
Confidence 6799999999999999984 57999999998764 34567899999999999999999999875543210
Q ss_pred hhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCceE
Q 000937 81 LSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKA 160 (1218)
Q Consensus 81 ~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~I 160 (1218)
..+. ...++++++.+||.+..++.+ +.||||||||++||++++.+| ++
T Consensus 102 --~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p-~~ 149 (210)
T cd03269 102 --KEEA------------------------RRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDP-EL 149 (210)
T ss_pred --hHHH------------------------HHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCC-CE
Confidence 0000 012467789999988888765 459999999999999999887 79
Q ss_pred EEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 161 MFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 161 LlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
++|||||+|||+.+...+.+.|+++++ .++|++++-|++. ++.+.+|++++|.+|++++.|
T Consensus 150 lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 150 LILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999875 4788888877654 567789999999999999875
No 465
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.94 E-value=1.9e-26 Score=258.78 Aligned_cols=186 Identities=20% Similarity=0.284 Sum_probs=151.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+.. .++.++||+|+..+++.+||+||+.+.......
T Consensus 38 i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~--- 114 (269)
T PRK11831 38 IMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQ--- 114 (269)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccC---
Confidence 6799999999999999995 4799999998876432 244689999999999999999999886432100
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
.+..+. ...+..+++.+||.+..|..++ .|||||||||+|||+++
T Consensus 115 ------~~~~~~------------------------~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~laral~ 159 (269)
T PRK11831 115 ------LPAPLL------------------------HSTVMMKLEAVGLRGAAKLMPS-----ELSGGMARRAALARAIA 159 (269)
T ss_pred ------CCHHHH------------------------HHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHh
Confidence 000000 0124567899999988887764 59999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
.+| ++|+|||||+|||+.+...+.+.|+++++..|+|||++.|.+ .++...+|++++|.+|++++.|+++++.
T Consensus 160 ~~p-~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 160 LEP-DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred cCC-CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 887 799999999999999999999999999865578988887764 4677889999999999999999988764
No 466
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.94 E-value=1.3e-26 Score=253.86 Aligned_cols=184 Identities=25% Similarity=0.319 Sum_probs=148.6
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLE 80 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~~ 80 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+...+ .+||+|++.+++.+||+|++.+........
T Consensus 16 i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~--~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-------- 85 (230)
T TIGR01184 16 LIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD--RMVVFQNYSLLPWLTVRENIALAVDRVLPD-------- 85 (230)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--heEEecCcccCCCCCHHHHHHHHHHhcccC--------
Confidence 6799999999999999985 479999999988654322 489999999999999999999863210000
Q ss_pred hhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCceE
Q 000937 81 LSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKA 160 (1218)
Q Consensus 81 ~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~I 160 (1218)
....+. ...++++++.+||++..++.+ +.||||||||++|||+++.+| ++
T Consensus 86 ~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p-~l 135 (230)
T TIGR01184 86 LSKSER------------------------RAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRP-KV 135 (230)
T ss_pred CCHHHH------------------------HHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCC-CE
Confidence 000000 012467789999998888765 459999999999999999888 89
Q ss_pred EEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhH
Q 000937 161 MFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESV 228 (1218)
Q Consensus 161 LlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l 228 (1218)
++|||||+|||+.+...+.+.|++++++.|+|||++-|++. ++...+|++++|.+|++++.|+..++
T Consensus 136 llLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 136 LLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999999999999999999998766889988877654 67788999999999999999976544
No 467
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.94 E-value=1.8e-26 Score=245.22 Aligned_cols=168 Identities=18% Similarity=0.233 Sum_probs=131.1
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-------ceeeEEEECCEeCccccccceEEEeccCCCCCCCCC
Q 000937 647 DDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-------CFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHIT 719 (1218)
Q Consensus 647 ~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-------~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 719 (1218)
+++++++++| +++|+||||||||||+++|+|..++. ...|++.++|++.......+.+++++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999875431 12357878877643333356799999987665
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh----hCCcEEEEeC
Q 000937 720 IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELV----ANPSIIFMDE 795 (1218)
Q Consensus 720 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~----~~p~llllDE 795 (1218)
|. .. ..++++++++. .+..++.+ ..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~----~~-------~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YS----II-------SQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------ee----EE-------ehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 11 00 12345566665 34444443 579999999999999997 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 796 PTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 796 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
||+|||+..+..+.+.|+++++ +.|||++||+++ ..+.+|+++.+...+
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~~~ 192 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTMQE 192 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEecc
Confidence 9999999999999999999865 789999999974 467899999987654
No 468
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.94 E-value=1.1e-26 Score=253.07 Aligned_cols=178 Identities=22% Similarity=0.364 Sum_probs=146.6
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|++||.++... ..++.++||+|++.+++.+||+|++.+....++.
T Consensus 36 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~------- 108 (218)
T cd03266 36 LLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL------- 108 (218)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCC-------
Confidence 6799999999999999995 479999999987642 2345689999999999999999999986543211
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
...+. ...++++++.+||.+..+..+ +.||||||||++|||+++.+|
T Consensus 109 ---~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p- 155 (218)
T cd03266 109 ---KGDEL------------------------TARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIARALVHDP- 155 (218)
T ss_pred ---CHHHH------------------------HHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHHHHhcCC-
Confidence 00000 112467899999988888765 459999999999999998887
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
++|+|||||+|||+.+...+.+.|+++++ .++|+|++.|++ .++...+|++++|++|++++.|
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 79999999999999999999999999875 578999888866 4677889999999999998875
No 469
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.94 E-value=1.9e-26 Score=266.52 Aligned_cols=186 Identities=25% Similarity=0.313 Sum_probs=153.6
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCc----ccCCcc------cc-ceEEeeccccccCCCCCHHHHHHHHhhcc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGY----KLEEFV------PQ-KLSAYVSQYDLHIPEMTVRETLDFSTYCQ 69 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~----~~~~~~------~~-~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk 69 (1218)
|.|++|||||||.+...|. .+|+|+++|. ++...+ .| +.++||+|+..++|.+||+||+.|..+.+
T Consensus 55 I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~ 134 (382)
T TIGR03415 55 LMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ 134 (382)
T ss_pred EECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc
Confidence 6799999999999999995 4799999996 333221 11 46899999999999999999999986543
Q ss_pred CCCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhH
Q 000937 70 GVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTT 149 (1218)
Q Consensus 70 ~~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSI 149 (1218)
+.. +.+. ...++++++.+||++..|..++ .|||||||||+|
T Consensus 135 g~~----------~~~~------------------------~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~L 175 (382)
T TIGR03415 135 GMP----------EAER------------------------RKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGL 175 (382)
T ss_pred CCC----------HHHH------------------------HHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHH
Confidence 210 1111 0124677999999988887764 499999999999
Q ss_pred HHHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 150 GREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 150 A~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
||+++.+| +||+|||||||||+.+..++++.|+++.++.++|||++.|.+. ++.+++|+|++|.+|+++..|+++++.
T Consensus 176 ARALa~~P-~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 176 ARAFAMDA-DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HHHHhcCC-CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99998887 8999999999999999999999999998766889999887644 678999999999999999999998886
Q ss_pred H
Q 000937 230 E 230 (1218)
Q Consensus 230 ~ 230 (1218)
.
T Consensus 254 ~ 254 (382)
T TIGR03415 254 L 254 (382)
T ss_pred h
Confidence 3
No 470
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.94 E-value=1.1e-26 Score=252.62 Aligned_cols=174 Identities=22% Similarity=0.317 Sum_probs=142.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+.. .++.++||+|++.+++.+||+|++.|..+.++..
T Consensus 34 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~-- 111 (216)
T TIGR00960 34 LVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVP-- 111 (216)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCC--
Confidence 6799999999999999995 4799999999875422 3456899999999999999999999975533210
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
.++. ...++++++.+||++..|..++ .|||||||||+|||+++
T Consensus 112 --------~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~ 154 (216)
T TIGR00960 112 --------PRDA------------------------NERVSAALEKVGLEGKAHALPM-----QLSGGEQQRVAIARAIV 154 (216)
T ss_pred --------HHHH------------------------HHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHh
Confidence 0000 0124677899999888887654 59999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcE
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKI 219 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~i 219 (1218)
.+| +||+|||||+|||+.+...+.+.|+++++ .++|+|++-|.+ .++...+|++++|.+|++
T Consensus 155 ~~p-~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 155 HKP-PLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred cCC-CEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 887 89999999999999999999999999875 478888887765 366678999999999974
No 471
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.94 E-value=1.4e-26 Score=252.98 Aligned_cols=182 Identities=22% Similarity=0.391 Sum_probs=147.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc----cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP----QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~----~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|+++|.++..... ++.++||+|++.+++.+||+|++.+...... .
T Consensus 31 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~---~-- 105 (222)
T cd03224 31 LLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR---R-- 105 (222)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC---c--
Confidence 6799999999999999995 47999999988765331 3458999999999999999999998754321 0
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHh-CCcccccceecCCcCCcCCccccchhhHHHHHhh
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKIL-GLDICADTLVGDAIRRGISGGQKRRLTTGREMLV 155 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~l-gL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~ 155 (1218)
.+. ...++.+++.+ +|.+..|+.+ +.||||||||++|||+++.
T Consensus 106 -------~~~------------------------~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 106 -------AKR------------------------KARLERVYELFPRLKERRKQLA-----GTLSGGEQQMLAIARALMS 149 (222)
T ss_pred -------hhH------------------------HHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHHHHHHHHHhc
Confidence 000 00134556666 4766667654 4599999999999999998
Q ss_pred CCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 156 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 156 ~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
+| ++++|||||+|||+.+...+++.|+++++ .++|+|++.|.+ .++...+|++++|.+|++++.|+.+++.
T Consensus 150 ~p-~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 150 RP-KLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CC-CEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 87 79999999999999999999999999876 578988887765 4667889999999999999999987754
No 472
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.94 E-value=1.4e-26 Score=256.68 Aligned_cols=192 Identities=21% Similarity=0.245 Sum_probs=150.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+.. .++.++||+|++.+++.+||+||+.++...... ..
T Consensus 33 l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~ 111 (243)
T TIGR02315 33 IIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKP-TW 111 (243)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhccccccc-ch
Confidence 6799999999999999995 4799999998876421 245689999999999999999999875321100 00
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
..+.. ...++ ....++++++.+||.+..|..+ +.|||||||||+|||+++
T Consensus 112 ~~~~~-~~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~ 161 (243)
T TIGR02315 112 RSLLG-RFSEE------------------------DKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALA 161 (243)
T ss_pred hhhhc-cccHH------------------------HHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHh
Confidence 00000 00000 0112466789999988777654 459999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESV 228 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l 228 (1218)
.+| +||+|||||+|||+.+...+.+.|++++++.++|+|++.|++. ++...+|++++|.+|++++.|+++++
T Consensus 162 ~~p-~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 162 QQP-DLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred cCC-CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 887 7999999999999999999999999987656889998888654 56688999999999999999998765
No 473
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.94 E-value=1.3e-26 Score=252.45 Aligned_cols=174 Identities=25% Similarity=0.378 Sum_probs=142.7
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.... .++.++||+|++.+++.+||+|++.|.+..++..
T Consensus 35 l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~- 113 (218)
T cd03255 35 IVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVP- 113 (218)
T ss_pred EEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCC-
Confidence 6799999999999999995 4799999999876432 1346899999999999999999999976543210
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
..+. ...++.+++.+||.+..|..+ +.|||||||||+|||++
T Consensus 114 ---------~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al 155 (218)
T cd03255 114 ---------KKER------------------------RERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARAL 155 (218)
T ss_pred ---------HHHH------------------------HHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHH
Confidence 0000 112467799999988777765 45999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcE
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKI 219 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~i 219 (1218)
+.+| +||+|||||+|||+.+...+.+.|++++++.++|||++-|++.. + ..+|++++|.+|++
T Consensus 156 ~~~p-~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~G~i 218 (218)
T cd03255 156 ANDP-KIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRDGKI 218 (218)
T ss_pred ccCC-CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeCCcC
Confidence 9887 79999999999999999999999999986568899999888753 4 48999999999974
No 474
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.3e-26 Score=259.17 Aligned_cols=184 Identities=20% Similarity=0.287 Sum_probs=151.5
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeecccc-ccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D-~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+.. .++.++||+|++ ..++..||+||+.|..+..+.
T Consensus 38 i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~----- 112 (279)
T PRK13650 38 IIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGI----- 112 (279)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCC-----
Confidence 6799999999999999995 5799999999886432 345689999996 467788999999987543211
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
++++. ...++++++.+||++-.|..+ +.||||||||++|||+++.+
T Consensus 113 -----~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qrv~lAral~~~ 158 (279)
T PRK13650 113 -----PHEEM------------------------KERVNEALELVGMQDFKEREP-----ARLSGGQKQRVAIAGAVAMR 158 (279)
T ss_pred -----CHHHH------------------------HHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcC
Confidence 01110 112567899999998878765 45999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
| +||+|||||+|||+.+...+++.|+++++..|+|||++.|++. ++ ..+|+|++|.+|+++..|++++..
T Consensus 159 p-~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 159 P-KIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred C-CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 8 7999999999999999999999999998766899999988865 34 579999999999999999988765
No 475
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.94 E-value=2.4e-26 Score=263.43 Aligned_cols=187 Identities=23% Similarity=0.266 Sum_probs=150.8
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeecccc--ccCCCCCHHHHHHHHhhccCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVG 72 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D--~l~~~LTVrEtL~Faa~lk~~~ 72 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+.. .++.++||+|++ .++|.+||+|++.+..+....+
T Consensus 52 lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~ 131 (331)
T PRK15079 52 VVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPK 131 (331)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccC
Confidence 6799999999999999984 5799999999987542 245689999997 6899999999999865432100
Q ss_pred CchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCc-ccccceecCCcCCcCCccccchhhHHH
Q 000937 73 SRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD-ICADTLVGDAIRRGISGGQKRRLTTGR 151 (1218)
Q Consensus 73 ~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGeKrRvSIA~ 151 (1218)
.++++. ...+.++++.+||. +..|... ..|||||||||+|||
T Consensus 132 --------~~~~~~------------------------~~~~~~~l~~vgl~~~~~~~~p-----~~LSgG~~QRv~iAr 174 (331)
T PRK15079 132 --------LSRQEV------------------------KDRVKAMMLKVGLLPNLINRYP-----HEFSGGQCQRIGIAR 174 (331)
T ss_pred --------CCHHHH------------------------HHHHHHHHHHcCCChHHhcCCc-----ccCCHHHHHHHHHHH
Confidence 011111 11246778999994 4556544 569999999999999
Q ss_pred HHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 152 EMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 152 ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
+++.+| ++|++||||+|||..+..++++.|+++.++.+.|+|++.|.. ..+...+|+|++|.+|++++.|+.+++.
T Consensus 175 AL~~~P-~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 175 ALILEP-KLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred HHhcCC-CEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999988 899999999999999999999999999876688888887643 4566789999999999999999998876
No 476
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.94 E-value=2.8e-26 Score=252.73 Aligned_cols=185 Identities=24% Similarity=0.305 Sum_probs=150.7
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc--ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV--PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~--~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
+.|++|||||||.+...|. .+|+|++||.++.+.. .++.++||+|++.+++.+||+|++.+.+..+..
T Consensus 32 i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~------- 104 (236)
T TIGR03864 32 LLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGL------- 104 (236)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCC-------
Confidence 6799999999999999995 4799999999876432 224689999999888999999999886543210
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
...+. ...++++++.+||++..|+.++ .||||||||++|||+++.+|
T Consensus 105 ---~~~~~------------------------~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~~p- 151 (236)
T TIGR03864 105 ---SRAEA------------------------RERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIARALLHRP- 151 (236)
T ss_pred ---CHHHH------------------------HHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCC-
Confidence 00000 0124667889999888887664 59999999999999999888
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++|||||+|||+.+...+.+.|+++++..|+|+|++-|.+.. + ..+|++++|.+|++++.|+++++..
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 79999999999999999999999999986568899998887763 3 4599999999999999999887764
No 477
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.94 E-value=1.3e-26 Score=250.36 Aligned_cols=174 Identities=26% Similarity=0.332 Sum_probs=144.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
+.|++|||||||.+...|. .+|+|.+||.++.+. ..++.++||+|++.+++.+||+|++.+.......
T Consensus 31 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-------- 102 (208)
T cd03268 31 FLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI-------- 102 (208)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC--------
Confidence 6799999999999999985 589999999987542 2245689999999999999999999886532210
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
. +..++++++.+||.+..|..++ .|||||||||+||++++.+| +
T Consensus 103 ---~---------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p-~ 146 (208)
T cd03268 103 ---R---------------------------KKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLGNP-D 146 (208)
T ss_pred ---c---------------------------HHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHHHHHHHHHhcCC-C
Confidence 0 0124667899999888777654 59999999999999998887 7
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
+++|||||+|||+.+...+.+.|+++++ .++|+|++.|++. ++...+|++++|.+|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999876 5789888877654 566789999999999999876
No 478
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.93 E-value=2.5e-26 Score=254.97 Aligned_cols=183 Identities=22% Similarity=0.321 Sum_probs=147.5
Q ss_pred CCCCCCCCcchhhcccceeE--------EEEEEECCcccCCc-----cccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000937 4 LNDRIGFGLSVISWFCTGLV--------TGEVSYNGYKLEEF-----VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQG 70 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~~--------~G~V~~nG~~~~~~-----~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~ 70 (1218)
|.|++|||||||.+...|.. +|+|++||.++.+. ..++.++||+|+..+++ +||+||+.+..+.++
T Consensus 32 i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~ 110 (247)
T TIGR00972 32 LIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG 110 (247)
T ss_pred EECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC
Confidence 67999999999999999854 89999999987642 12456899999998898 999999998754331
Q ss_pred CCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCc----ccccceecCCcCCcCCccccch
Q 000937 71 VGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD----ICADTLVGDAIRRGISGGQKRR 146 (1218)
Q Consensus 71 ~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~----~~~dT~VG~~~~rGLSGGeKrR 146 (1218)
.. +.++. ...+..+++.+||. +..|..+ +.||||||||
T Consensus 111 ~~---------~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG~~qr 152 (247)
T TIGR00972 111 IK---------DKKEL------------------------DEIVEESLKKAALWDEVKDRLHDSA-----LGLSGGQQQR 152 (247)
T ss_pred CC---------CHHHH------------------------HHHHHHHHHHcCCCcchhhHhhCCc-----ccCCHHHHHH
Confidence 00 00010 01246678899997 5555544 4699999999
Q ss_pred hhHHHHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChh
Q 000937 147 LTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRE 226 (1218)
Q Consensus 147 vSIA~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~ 226 (1218)
++|||+++.+| ++++|||||+|||+.+...+.+.|+++++ ++|+|++-|++. ++...+|++++|++|+++++|+++
T Consensus 153 v~laral~~~p-~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 228 (247)
T TIGR00972 153 LCIARALAVEP-EVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTE 228 (247)
T ss_pred HHHHHHHhcCC-CEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999887 89999999999999999999999999875 378888877544 667889999999999999999988
Q ss_pred hHH
Q 000937 227 SVL 229 (1218)
Q Consensus 227 ~l~ 229 (1218)
++.
T Consensus 229 ~~~ 231 (247)
T TIGR00972 229 QIF 231 (247)
T ss_pred HHH
Confidence 764
No 479
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3e-26 Score=251.82 Aligned_cols=186 Identities=17% Similarity=0.286 Sum_probs=152.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.... .++.++||+|++.+++.+||+||+.+...... . .
T Consensus 30 l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~----~-- 102 (232)
T PRK10771 30 ILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL-K----L-- 102 (232)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc-C----C--
Confidence 6799999999999999995 5799999999876432 23468999999999999999999988532110 0 0
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
.+.. +..++++++.+||++..|+.++ .||||||||++|||+++.+| +
T Consensus 103 ---~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p-~ 149 (232)
T PRK10771 103 ---NAAQ------------------------REKLHAIARQMGIEDLLARLPG-----QLSGGQRQRVALARCLVREQ-P 149 (232)
T ss_pred ---CHHH------------------------HHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCC-C
Confidence 0000 1125677999999988888764 59999999999999999888 7
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+++|||||+|||..+...+.+.|+++++..|+|+|++-|++. ++.+.+|++++|.+|++++.|+.+++.+
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999988656889998877654 6678899999999999999999887663
No 480
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.93 E-value=7.1e-27 Score=291.76 Aligned_cols=188 Identities=23% Similarity=0.370 Sum_probs=153.0
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ .++.++||+|++.+|+. |+||||.+...-
T Consensus 363 IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~--------- 432 (571)
T TIGR02203 363 LVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRTE--------- 432 (571)
T ss_pred EECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCCC---------
Confidence 4689999999999999995 4699999999988654 35678999999988865 999999885210
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
+ .++++++.+++.+..+.++.+ |++..||.||+. .+.||||||||++|||+++.+|
T Consensus 433 --~----------~~~~~i~~~l~~~~l~~~i~~-----------lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~ 488 (571)
T TIGR02203 433 --Q----------ADRAEIERALAAAYAQDFVDK-----------LPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDA 488 (571)
T ss_pred --C----------CCHHHHHHHHHHcChHHHHHh-----------CcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCC
Confidence 0 112345556666555544443 445569999986 4679999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++||||||+||+.++..+.+.|++.+ .++|+|+.-|+| +..+.+|+|++|++|+++..|+++++++
T Consensus 489 -~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 489 -PILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred -CEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 7999999999999999999999999875 357777776766 6789999999999999999999999874
No 481
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=2.7e-26 Score=253.62 Aligned_cols=184 Identities=24% Similarity=0.341 Sum_probs=150.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-----cccceEEeeccccccCCCCCHHHHHHHHhh-ccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-----VPQKLSAYVSQYDLHIPEMTVRETLDFSTY-CQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-----~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~-lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+. ..++.++||+|++.+++.+||+|++.|+.. .++.
T Consensus 32 l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~--- 108 (240)
T PRK09493 32 IIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGA--- 108 (240)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCC---
Confidence 6799999999999999995 479999999987642 224568999999999999999999988642 1110
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
..++. ...++++++.+||++..|..+ +.||||||||++|||+++
T Consensus 109 -------~~~~~------------------------~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 109 -------SKEEA------------------------EKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALA 152 (240)
T ss_pred -------CHHHH------------------------HHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHh
Confidence 00000 112467889999987777655 469999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
.+| +|++|||||+|||..+...+.+.|+++++ .++|+|++.|++. ++...+|++++|.+|++++.|+.+++.
T Consensus 153 ~~p-~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 153 VKP-KLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred cCC-CEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 888 79999999999999999999999999875 4789888887654 567789999999999999999988765
No 482
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.6e-26 Score=256.44 Aligned_cols=185 Identities=23% Similarity=0.317 Sum_probs=152.0
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeecccc-ccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D-~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+.. .++.++||+|++ ..++.+||+||+.|..+..+.
T Consensus 38 i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~----- 112 (279)
T PRK13635 38 IVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGV----- 112 (279)
T ss_pred EECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCC-----
Confidence 6799999999999999995 5799999999886532 245689999997 467778999999987543210
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
..++. ...++++++.+||.+..++.++ .|||||||||+|||+++.+
T Consensus 113 -----~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrv~laral~~~ 158 (279)
T PRK13635 113 -----PREEM------------------------VERVDQALRQVGMEDFLNREPH-----RLSGGQKQRVAIAGVLALQ 158 (279)
T ss_pred -----CHHHH------------------------HHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcC
Confidence 01110 1135778899999988887764 5999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
| +||+|||||+|||+.+...+++.|+++++..|+||+++.|++.. + ..+|++++|.+|++++.|+.+++..
T Consensus 159 p-~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 159 P-DIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred C-CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHhc
Confidence 8 89999999999999999999999999987668999999888653 3 4699999999999999999887763
No 483
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.4e-26 Score=258.31 Aligned_cols=186 Identities=21% Similarity=0.283 Sum_probs=149.5
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCC--c---cccceEEeeccccc-cCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEE--F---VPQKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~--~---~~~~~~~yV~Q~D~-l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.. . ..++.++||+|++. .+...||+|++.|.....+.
T Consensus 37 i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~--- 113 (283)
T PRK13636 37 ILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKL--- 113 (283)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCC---
Confidence 6799999999999999995 57999999998741 1 23456899999863 33457999999986432210
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
+.++. ...++++++.+||.+..|+.+ +.||||||||++|||+++
T Consensus 114 -------~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrl~laraL~ 157 (283)
T PRK13636 114 -------PEDEV------------------------RKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLV 157 (283)
T ss_pred -------CHHHH------------------------HHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHHHHHHHHHH
Confidence 11111 012577899999998877765 459999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
.+| +||+|||||+|||+.+...+.+.|+++++..|+||+++-|++. ++...+|++++|++|++++.|+++++..
T Consensus 158 ~~p-~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 158 MEP-KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred cCC-CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 888 7999999999999999999999999998755889998877544 4566899999999999999999988764
No 484
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.6e-26 Score=255.95 Aligned_cols=183 Identities=20% Similarity=0.235 Sum_probs=147.8
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeecccc-ccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D-~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+.. .++.++||+|++ ..++..||+|++.|..+..+.
T Consensus 36 i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~----- 110 (274)
T PRK13647 36 LLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGL----- 110 (274)
T ss_pred EECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCC-----
Confidence 6799999999999999995 5799999999886432 235689999986 245568999999986442210
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
++.+. ...++++++.+||.+..|..++ .|||||||||+|||+++.+
T Consensus 111 -----~~~~~------------------------~~~~~~~l~~~~L~~~~~~~~~-----~LSgG~~qrv~laraL~~~ 156 (274)
T PRK13647 111 -----DKDEV------------------------ERRVEEALKAVRMWDFRDKPPY-----HLSYGQKKRVAIAGVLAMD 156 (274)
T ss_pred -----CHHHH------------------------HHHHHHHHHHCCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcC
Confidence 01110 0124677999999988887764 5999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESV 228 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l 228 (1218)
| ++|+|||||+|||+.+...+++.|+++++ .|+||+++-|.+. ++.+.+|+|++|++|++++.|+++++
T Consensus 157 p-~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 157 P-DVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred C-CEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 8 89999999999999999999999999986 4889888877643 56688999999999999999998653
No 485
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=1.4e-26 Score=286.19 Aligned_cols=188 Identities=25% Similarity=0.366 Sum_probs=151.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ .++.++||+|++.+|+. |++||+.+... .
T Consensus 349 ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~----~----- 418 (544)
T TIGR01842 349 IIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE----N----- 418 (544)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC----C-----
Confidence 5689999999999999984 5799999999987654 45678999999999976 99999985321 0
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
. .++++.++++.+.++++... |++..||.+|+. .+.||||||||++|||+++.+|
T Consensus 419 ---~----------~~~~~~~~~~~~~~~~~i~~-----------l~~gl~t~~~~~-g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 419 ---A----------DPEKIIEAAKLAGVHELILR-----------LPDGYDTVIGPG-GATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred ---C----------CHHHHHHHHHHhChHHHHHh-----------CccccccccCCC-cCCCCHHHHHHHHHHHHHhcCC
Confidence 0 01234445555544433332 345569999875 4669999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+|||||||||+.++..+.+.|+++.. .++|+|++.|+++ +.+.+|+|++|++|++++.|+++++.+
T Consensus 474 -~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 474 -KLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred -CEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 79999999999999999999999998853 4788888888774 678899999999999999999998864
No 486
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.8e-26 Score=253.33 Aligned_cols=185 Identities=23% Similarity=0.318 Sum_probs=147.7
Q ss_pred CCCCCCCCcchhhcccceeE--------EEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000937 4 LNDRIGFGLSVISWFCTGLV--------TGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVG 72 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~~--------~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~ 72 (1218)
|.|++|||||||.+...|.. +|+|++||.++.+.. .++.++||+|++.+++.+||+||+.+..+.+...
T Consensus 34 i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~ 113 (250)
T PRK14247 34 LMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLV 113 (250)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcccc
Confidence 67999999999999999963 899999999876432 3456899999998899999999999875432100
Q ss_pred CchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcc----cccceecCCcCCcCCccccchhh
Q 000937 73 SRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDI----CADTLVGDAIRRGISGGQKRRLT 148 (1218)
Q Consensus 73 ~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~----~~dT~VG~~~~rGLSGGeKrRvS 148 (1218)
. +.++. ...+.++++.+||.+ ..|+.+ +.|||||||||+
T Consensus 114 ~--------~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG~~qrv~ 156 (250)
T PRK14247 114 K--------SKKEL------------------------QERVRWALEKAQLWDEVKDRLDAPA-----GKLSGGQQQRLC 156 (250)
T ss_pred C--------CHHHH------------------------HHHHHHHHHHcCCCcchhhhhcCCc-----ccCCHHHHHHHH
Confidence 0 00000 012466788899864 334443 569999999999
Q ss_pred HHHHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhH
Q 000937 149 TGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESV 228 (1218)
Q Consensus 149 IA~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l 228 (1218)
|||+++.+| +|++|||||+|||+.+...+.+.|+++++ ++|+|++.|++. ++...+|++++|++|++++.|+++++
T Consensus 157 laral~~~p-~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 157 IARALAFQP-EVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHhcCC-CEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999998877 89999999999999999999999999863 688888887654 66788999999999999999998877
Q ss_pred H
Q 000937 229 L 229 (1218)
Q Consensus 229 ~ 229 (1218)
.
T Consensus 233 ~ 233 (250)
T PRK14247 233 F 233 (250)
T ss_pred H
Confidence 5
No 487
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.7e-26 Score=245.02 Aligned_cols=157 Identities=36% Similarity=0.647 Sum_probs=135.3
Q ss_pred CCCCCCCCcchhhccccee------EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCch
Q 000937 4 LNDRIGFGLSVISWFCTGL------VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRA 75 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~------~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~ 75 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+. ..++.++||+|++.+++.+||+||+.+++++.
T Consensus 38 i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------ 111 (202)
T cd03233 38 VLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------ 111 (202)
T ss_pred EECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc------
Confidence 6799999999999999995 379999999987643 23556899999999999999999998863210
Q ss_pred hhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhh
Q 000937 76 DILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLV 155 (1218)
Q Consensus 76 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~ 155 (1218)
.|. ..+.||||||||++||++++.
T Consensus 112 ---------------------------------------------------~~~-----~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 112 ---------------------------------------------------GNE-----FVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ---------------------------------------------------ccc-----chhhCCHHHHHHHHHHHHHhh
Confidence 121 235699999999999999998
Q ss_pred CCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 156 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 156 ~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
+| ++++|||||+|||+.+...+++.++++++..++|+|++.||+..++.+.+|++++|++|++++.|
T Consensus 136 ~p-~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RA-SVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CC-CEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 88 79999999999999999999999999987557788888898888999999999999999999876
No 488
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.8e-26 Score=248.48 Aligned_cols=179 Identities=20% Similarity=0.292 Sum_probs=145.8
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|++||.++.... .++.++||+|++.+++.+||+||+.++......
T Consensus 29 l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-------- 100 (211)
T cd03298 29 IVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK-------- 100 (211)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccC--------
Confidence 6799999999999999984 5799999999876432 245689999999999999999999886432100
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
..+ +. +..++++++.+||.+..|+.+ +.||||||||++|||+++.+| +
T Consensus 101 -~~~-~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p-~ 148 (211)
T cd03298 101 -LTA-ED------------------------RQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDK-P 148 (211)
T ss_pred -ccH-HH------------------------HHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCC-C
Confidence 000 00 112467899999988888765 469999999999999999887 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
+++|||||+|||..+...+++.|++++++.++|+|++-|++ .++-+.+|++++|.+|++++.|
T Consensus 149 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 149 VLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999865688988887654 4666889999999999998865
No 489
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.93 E-value=2.4e-26 Score=267.79 Aligned_cols=188 Identities=21% Similarity=0.311 Sum_probs=153.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+.. .++.++||+|+..+++.+||+|++.+...-... . .
T Consensus 34 liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~--~--~ 109 (402)
T PRK09536 34 LVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS--R--F 109 (402)
T ss_pred EECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcc--c--c
Confidence 6799999999999999994 4899999999887532 345689999999998999999999985321100 0 0
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
. ..+. + ....++++++.+||.+-.|..+ +.|||||||||.|||+|+.+|
T Consensus 110 ~-~~~~-~------------------------~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~IArAL~~~P 158 (402)
T PRK09536 110 D-TWTE-T------------------------DRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVLLARALAQAT 158 (402)
T ss_pred c-CCCH-H------------------------HHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCC
Confidence 0 0000 0 0123578899999998888765 459999999999999999888
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
+||+|||||+|||+.+..++++.|+++++ .|+|||++.|. ..++.+.+|++++|++|++++.|++++++
T Consensus 159 -~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHd-l~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 159 -PVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHD-LDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred -CEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECC-HHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 79999999999999999999999999986 58899998875 44677899999999999999999998765
No 490
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.8e-26 Score=259.34 Aligned_cols=185 Identities=22% Similarity=0.248 Sum_probs=149.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-------cccceEEeecccc--ccCCCCCHHHHHHHHhhccCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-------VPQKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGV 71 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-------~~~~~~~yV~Q~D--~l~~~LTVrEtL~Faa~lk~~ 71 (1218)
|.|++|||||||.+...|. .+|+|++||.++... ..++.++||+|++ .+++ .||+|++.|.....+.
T Consensus 38 i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~ 116 (286)
T PRK13646 38 IVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKM 116 (286)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCC
Confidence 6799999999999999995 469999999987532 2355789999985 4665 5999999986542210
Q ss_pred CCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCc-ccccceecCCcCCcCCccccchhhHH
Q 000937 72 GSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD-ICADTLVGDAIRRGISGGQKRRLTTG 150 (1218)
Q Consensus 72 ~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGeKrRvSIA 150 (1218)
+.++. ...++++++.+||. +..|+.+ +.|||||||||+||
T Consensus 117 ----------~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~la 157 (286)
T PRK13646 117 ----------NLDEV------------------------KNYAHRLLMDLGFSRDVMSQSP-----FQMSGGQMRKIAIV 157 (286)
T ss_pred ----------CHHHH------------------------HHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHH
Confidence 01110 01246778999997 6777654 46999999999999
Q ss_pred HHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 151 REMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 151 ~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
|+++.+| +||+|||||+|||+.+...+.+.|+++++..|+|||++.|++. ++...+|+|++|++|++++.|+++++..
T Consensus 158 raL~~~p-~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 158 SILAMNP-DIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHhCC-CEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999888 8999999999999999999999999998766889999877654 5678899999999999999999887653
No 491
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.7e-26 Score=248.62 Aligned_cols=177 Identities=23% Similarity=0.400 Sum_probs=144.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc--ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV--PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~--~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+.. .++.++||+|++.+++.+||+|++.+....++..
T Consensus 30 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~------ 103 (211)
T cd03264 30 LLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP------ 103 (211)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC------
Confidence 6799999999999999984 5799999998876432 3456899999999999999999999865433110
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
+.+. ...++.+++.+||.+..|+.++ .|||||||||+|||+++.+|
T Consensus 104 ----~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p- 149 (211)
T cd03264 104 ----SKEV------------------------KARVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDP- 149 (211)
T ss_pred ----HHHH------------------------HHHHHHHHHHCCCHHHHhCchh-----hCCHHHHHHHHHHHHHhcCC-
Confidence 0000 0124677899999988887664 59999999999999999887
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
++++|||||+|||+.+...+.+.|+++++ ++|+|++-|++. ++...+|++++|.+|++++.|
T Consensus 150 ~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 150 SILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 89999999999999999999999999875 478888766543 566789999999999999876
No 492
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=6.9e-26 Score=249.25 Aligned_cols=186 Identities=24% Similarity=0.357 Sum_probs=153.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||+|.+...|. .+|+|+++|.++.+.. .++.++||+|++.+++.+||+|++.++....+..
T Consensus 30 i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~------- 102 (235)
T cd03299 30 ILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVD------- 102 (235)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCC-------
Confidence 6799999999999999994 5799999999886532 2456899999999999999999999864332100
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
..+. ...+++.++.+||.+..++.+ +.||||||||++|||+++.+| +
T Consensus 103 ---~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p-~ 149 (235)
T cd03299 103 ---KKEI------------------------ERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNP-K 149 (235)
T ss_pred ---HHHH------------------------HHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCC-C
Confidence 0000 012356788999988888776 459999999999999999988 7
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+++|||||+|||+.+...+.+.|++++...++|++++.|++ .++...+|++++|++|++++.|+++++..
T Consensus 150 llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 150 ILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999998765588999998876 45677899999999999999999887653
No 493
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.93 E-value=4.7e-26 Score=249.87 Aligned_cols=185 Identities=21% Similarity=0.265 Sum_probs=148.6
Q ss_pred CCCCCCCCcchhhccccee-------EEEEEEECCcccCCcccc-ceEEeeccccc--cCCCCCHHHHHHHHhhccCCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL-------VTGEVSYNGYKLEEFVPQ-KLSAYVSQYDL--HIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~-------~~G~V~~nG~~~~~~~~~-~~~~yV~Q~D~--l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
|.|++|||||||.+...|. .+|+|++||.++.....+ +.++||+|++. +.+.+|++|++.+.....+..
T Consensus 17 i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~- 95 (230)
T TIGR02770 17 LVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKL- 95 (230)
T ss_pred EECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcCcc-
Confidence 6799999999999999994 489999999988654332 46899999974 567899999998764322100
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcc---cccceecCCcCCcCCccccchhhHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDI---CADTLVGDAIRRGISGGQKRRLTTG 150 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~---~~dT~VG~~~~rGLSGGeKrRvSIA 150 (1218)
. .+. ...++++++.+||.+ ..+..+ +.|||||||||+||
T Consensus 96 --------~-~~~------------------------~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~la 137 (230)
T TIGR02770 96 --------S-KQA------------------------RALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIA 137 (230)
T ss_pred --------H-HHH------------------------HHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHH
Confidence 0 000 112567899999984 344443 45999999999999
Q ss_pred HHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 151 REMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 151 ~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
|+++.+| +||+|||||+|||..+...+.+.|++++++.++|||++-|++. ++...+|++++|.+|++++.|+++++.
T Consensus 138 ral~~~p-~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 138 LALLLEP-PFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHhcCC-CEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999888 7999999999999999999999999998656889998877655 677889999999999999999988775
No 494
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.93 E-value=1.4e-26 Score=287.31 Aligned_cols=187 Identities=23% Similarity=0.331 Sum_probs=151.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ +++.++||+|++.+|+. |++||+.+... .
T Consensus 346 ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~----~----- 415 (569)
T PRK10789 346 ICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP----D----- 415 (569)
T ss_pred EECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC----C-----
Confidence 5799999999999999984 5799999999987653 35678999999998875 99999988521 0
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
. ++++++.+++.+..+.++ ..|++..||.+|+. ...||||||||++|||+++.+|
T Consensus 416 ---~----------~~~~~~~~~~~~~l~~~i-----------~~lp~gl~t~~~~~-g~~LSgGq~qRi~lARall~~~ 470 (569)
T PRK10789 416 ---A----------TQQEIEHVARLASVHDDI-----------LRLPQGYDTEVGER-GVMLSGGQKQRISIARALLLNA 470 (569)
T ss_pred ---C----------CHHHHHHHHHHcCCHHHH-----------HhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCC
Confidence 0 112234444444333322 24566779999985 4569999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++|||||||||+.++..+++.|+++. .++|+|++.|++ ++.+.+|+|++|++|+++++|+++++.+
T Consensus 471 -~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~--~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 471 -EILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRL--SALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred -CEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--hHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 7999999999999999999999999875 478888888876 4778899999999999999999999874
No 495
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=6.5e-27 Score=227.10 Aligned_cols=195 Identities=26% Similarity=0.413 Sum_probs=165.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---ccccceEEEeccCCCCCCCCCHH
Q 000937 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHITIE 721 (1218)
Q Consensus 645 iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~ 721 (1218)
-|-.+|+++..||+.-++|||||||||||..++|+.+. +|+|.++|.+... ....|..+|..|+..-...+.|.
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~---sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~ 90 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVW 90 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC---CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhh
Confidence 36789999999999999999999999999999998764 8999999998643 23456678999988777788998
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-----CC--cEEEEe
Q 000937 722 ESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVA-----NP--SIIFMD 794 (1218)
Q Consensus 722 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~-----~p--~llllD 794 (1218)
..+... . +.+++...++++.+.+++++...+.+ ..|||||-|||-+|...+. || ++|+||
T Consensus 91 ~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD 157 (248)
T COG4138 91 HYLTLH----Q----PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD 157 (248)
T ss_pred hhhhhc----C----chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEec
Confidence 887642 2 23456667888888999886665543 5899999999999987664 44 699999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 795 EPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 795 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
||.++||...+..+-.+|.+++.+|++||++.||.+ ...+.+|++.+++ .|++...|..++
T Consensus 158 EP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~-rG~l~~~G~~~e 218 (248)
T COG4138 158 EPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-RGKLLASGRREE 218 (248)
T ss_pred CCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHh-cCeEEeecchhh
Confidence 999999999999999999999999999999999998 6788999999998 499999998765
No 496
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.3e-26 Score=251.48 Aligned_cols=185 Identities=18% Similarity=0.327 Sum_probs=150.7
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV----PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~----~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.... .++.++||+|++.+++.+||+||+.+..+....
T Consensus 34 l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~----- 108 (241)
T PRK10895 34 LLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDD----- 108 (241)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccc-----
Confidence 6799999999999999995 5799999999876432 245689999999999999999999886543210
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
....+. ...++.+++.+||.+..|..+ +.|||||||||+|||+++.+
T Consensus 109 ----~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~ 155 (241)
T PRK10895 109 ----LSAEQR------------------------EDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAAN 155 (241)
T ss_pred ----cCHHHH------------------------HHHHHHHHHHcCCHHHhhcch-----hhCCHHHHHHHHHHHHHhcC
Confidence 000000 112466789999987766654 46999999999999999888
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
| ++|+|||||+|||+.+...+.+.++++++ .|+|+|++-|++ .++...+|++++|.+|++++.|+++++.
T Consensus 156 p-~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 156 P-KFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred C-CEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 7 89999999999999999999999999875 578988887765 4788899999999999999999988764
No 497
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.93 E-value=5.2e-26 Score=253.13 Aligned_cols=184 Identities=21% Similarity=0.292 Sum_probs=149.0
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-----------cccceEEeeccccccCCCCCHHHHHHHHhhc-
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-----------VPQKLSAYVSQYDLHIPEMTVRETLDFSTYC- 68 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-----------~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~l- 68 (1218)
|.|++|||||||.+...|. .+|+|.++|.++... ..++.++||+|++.+++.+||+||+.++...
T Consensus 34 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (250)
T PRK11264 34 IIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV 113 (250)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHh
Confidence 6799999999999999995 479999999887531 1245689999999999999999999885421
Q ss_pred cCCCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhh
Q 000937 69 QGVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLT 148 (1218)
Q Consensus 69 k~~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvS 148 (1218)
+.. ...+. ...+..+++.+||.+..|+.+ +.|||||||||+
T Consensus 114 ~~~----------~~~~~------------------------~~~~~~~l~~~gl~~~~~~~~-----~~LS~Gq~qrv~ 154 (250)
T PRK11264 114 KGE----------PKEEA------------------------TARARELLAKVGLAGKETSYP-----RRLSGGQQQRVA 154 (250)
T ss_pred cCC----------CHHHH------------------------HHHHHHHHHHcCCcchhhCCh-----hhCChHHHHHHH
Confidence 110 00000 012456788999988777654 469999999999
Q ss_pred HHHHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhH
Q 000937 149 TGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESV 228 (1218)
Q Consensus 149 IA~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l 228 (1218)
|||+++.+| +||+|||||+|||+.+...+.+.|+++++ .|+|+|++-|.+. ++...+|++++|.+|++++.|+++++
T Consensus 155 la~al~~~p-~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 155 IARALAMRP-EVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMS-FARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred HHHHHhcCC-CEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999887 79999999999999999999999999875 4788888877654 67788999999999999999998876
Q ss_pred H
Q 000937 229 L 229 (1218)
Q Consensus 229 ~ 229 (1218)
.
T Consensus 232 ~ 232 (250)
T PRK11264 232 F 232 (250)
T ss_pred h
Confidence 4
No 498
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.9e-26 Score=259.43 Aligned_cols=187 Identities=21% Similarity=0.288 Sum_probs=151.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeecccc--ccCCCCCHHHHHHHHhhccCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVG 72 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D--~l~~~LTVrEtL~Faa~lk~~~ 72 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+.. .++.++||+|++ .+.|.+||.+++.+......
T Consensus 46 IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~-- 123 (327)
T PRK11308 46 VVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT-- 123 (327)
T ss_pred EECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--
Confidence 6799999999999999995 4799999999886542 245689999997 68999999999987654321
Q ss_pred CchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCc-ccccceecCCcCCcCCccccchhhHHH
Q 000937 73 SRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD-ICADTLVGDAIRRGISGGQKRRLTTGR 151 (1218)
Q Consensus 73 ~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGeKrRvSIA~ 151 (1218)
.+.+++. ...+.++++.+||. +..|..+ +.|||||||||+|||
T Consensus 124 -------~~~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~p-----~~LSgGq~QRv~iAr 167 (327)
T PRK11308 124 -------SLSAAER------------------------REKALAMMAKVGLRPEHYDRYP-----HMFSGGQRQRIAIAR 167 (327)
T ss_pred -------CCCHHHH------------------------HHHHHHHHHHCCCChHHhcCCC-----ccCCHHHHHHHHHHH
Confidence 0011111 11356789999996 3566654 569999999999999
Q ss_pred HHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 152 EMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 152 ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+++.+| +||++||||+|||..+..++++.|+++.++.|+|+|++.|. ...+...+|+|++|++|++++.|+.+++.+
T Consensus 168 AL~~~P-~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd-l~~~~~~adrv~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 168 ALMLDP-DVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD-LSVVEHIADEVMVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred HHHcCC-CEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999988 89999999999999999999999999987678888887664 335567899999999999999999988864
No 499
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6e-26 Score=259.87 Aligned_cols=187 Identities=19% Similarity=0.245 Sum_probs=147.1
Q ss_pred CCCCCCCCcchhhcccceeE--------EEEEEECCcccCCc-----cccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000937 4 LNDRIGFGLSVISWFCTGLV--------TGEVSYNGYKLEEF-----VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQG 70 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~~--------~G~V~~nG~~~~~~-----~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~ 70 (1218)
+.||+|||||+|.+...|.. +|+|.+||.++.+. ..++.++||+|++.+++ .||+||+.|.....+
T Consensus 113 IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~ 191 (329)
T PRK14257 113 FIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG 191 (329)
T ss_pred EECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC
Confidence 57999999999999999864 89999999998632 34567899999998885 799999998643211
Q ss_pred CCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHH
Q 000937 71 VGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTG 150 (1218)
Q Consensus 71 ~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA 150 (1218)
.+.++.. +..+..+++..+|.+..++.++. ....|||||||||+||
T Consensus 192 ----------~~~~~~~-----------------------~~~~~~~l~~~~L~~~l~~~~~~-~~~~LSgGqkqRl~LA 237 (329)
T PRK14257 192 ----------INDRKIL-----------------------EKIVEKSLKSAALWDEVKDDLDK-AGNALSGGQQQRLCIA 237 (329)
T ss_pred ----------CChHHHH-----------------------HHHHHHHHHHcCCcchhhhhhhC-CcccCCHHHHHHHHHH
Confidence 0001100 01134557777776555566654 3466999999999999
Q ss_pred HHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 151 REMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 151 ~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
|+++.+| +||+|||||+|||+.+...+.+.|+++++ ++|+|++.|++. .+...+|+|++|.+|+++++|++.++.
T Consensus 238 RAl~~~p-~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 238 RAIALEP-EVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHhCC-CEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999888 79999999999999999999999999874 578888877643 445669999999999999999999886
No 500
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.93 E-value=4e-26 Score=253.10 Aligned_cols=174 Identities=23% Similarity=0.280 Sum_probs=145.5
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLE 80 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~~ 80 (1218)
|.|++|||||||.+...|. .+|+|.++|.++.+ .++.++||+|++.+++.+||+||+.+....
T Consensus 43 I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~------------ 108 (257)
T PRK11247 43 VVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVIDNVGLGLKG------------ 108 (257)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHHHHHhcccc------------
Confidence 6799999999999999995 47999999987653 355689999999999999999999884210
Q ss_pred hhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCceE
Q 000937 81 LSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKA 160 (1218)
Q Consensus 81 ~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~I 160 (1218)
..+ ..++.+++.+||.+..+..+ +.|||||||||+|||+++.+| ++
T Consensus 109 --~~~--------------------------~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkqrl~laraL~~~p-~l 154 (257)
T PRK11247 109 --QWR--------------------------DAALQALAAVGLADRANEWP-----AALSGGQKQRVALARALIHRP-GL 154 (257)
T ss_pred --hHH--------------------------HHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCC-CE
Confidence 000 02356788999988777665 459999999999999999887 79
Q ss_pred EEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChh
Q 000937 161 MFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRE 226 (1218)
Q Consensus 161 LlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~ 226 (1218)
++|||||+|||+.+...+.+.|+++++..++|+|++-|++. ++...+|+|++|.+|++++.|+.+
T Consensus 155 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 155 LLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999987666889888877655 567889999999999999988764
Done!