Query 000937
Match_columns 1218
No_of_seqs 312 out of 4514
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 17:23:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000937.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_704-707//hhsearch_pdb/000937hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 634.6 29.1 719 4-856 449-1300(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 575.0 35.8 743 4-856 421-1254(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 402.7 29.3 204 615-858 356-561 (607)
4 2iw3_A Elongation factor 3A; a 1.0 1 1 399.6 28.6 410 3-854 465-981 (986)
5 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 394.0 26.2 217 615-869 268-486 (538)
6 3ux8_A Excinuclease ABC, A sub 1.0 1 1 392.7 29.9 198 643-856 335-636 (670)
7 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 392.0 28.9 204 615-858 286-491 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 382.0 20.0 201 644-869 361-568 (608)
9 3pih_A Uvrabc system protein A 1.0 1 1 340.1 34.6 199 644-857 598-899 (916)
10 3tui_C Methionine import ATP-b 1.0 1 1 338.6 28.3 221 615-857 23-250 (366)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=634.56 Aligned_cols=719 Identities=19% Similarity=0.237 Sum_probs=373.0
Q ss_pred CCCCCCCCCCHHHCCCCE---EEEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH
Q ss_conf 889989882021002130---3998999888506776553---0388664532458889889999977430378874135
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVPQ---KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~g~~~~~l~~~~~g---~~~G~I~lnG~~~~~~~~r---~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~~l 77 (1218)
+-|+.|||||+|.+-..| ..+|+|++||+|+++.+.+ +..+||+|++.+|. .||+||+.|+..
T Consensus 449 ivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~~---------- 517 (1321)
T 4f4c_A 449 LVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGKE---------- 517 (1321)
T ss_dssp EEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTCT----------
T ss_pred EEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEEC-CCHHHHHHHHCC----------
T ss_conf 980589857788887545651644861579965011259998504666587533207-861678864155----------
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 64321466741049998823577776765531100089999982886424430027867767723221034777773099
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~~p 157 (1218)
. ..++++.++++.++++.|+..++.++ ||.||+.+ ..||||||||++|||+++.+|
T Consensus 518 --------~----~~~~~v~~a~~~a~l~~~i~~lp~G~-----------~T~vGe~G-~~LSGGQkQRiaiARAl~~~~ 573 (1321)
T 4f4c_A 518 --------G----ITREEMVAACKMANAEKFIKTLPNGY-----------NTLVGDRG-TQLSGGQKQRIAIARALVRNP 573 (1321)
T ss_dssp --------T----CCHHHHHHHHHHTTCHHHHHHSTTTT-----------SSEESSSS-CCCCHHHHHHHHHHHHHTTCC
T ss_pred --------C----CHHHHHHHHHHHCCCHHHHHCCCCCC-----------CCEECCCC-CCCCHHHHHHHHHHHHHCCCC
T ss_conf --------2----20999999998756546887088888-----------60755898-877777879999999872599
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHHHHHHCCC
Q ss_conf 62887527998847366999999999997724997999961699357820140889819818876482248999772898
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCGF 237 (1218)
Q Consensus 158 ~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~~f~~~G~ 237 (1218)
+|++||||||+||+.++..++++++++.+ ++|+|+..|++ ++++.+|+|++|.+|+++++|+|+++++- .|
T Consensus 574 -~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrl--s~i~~aD~Iivl~~G~ive~Gth~eL~~~---~g- 644 (1321)
T 4f4c_A 574 -KILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRL--STIRNADLIISCKNGQVVEVGDHRALMAQ---QG- 644 (1321)
T ss_dssp -SEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCT--TTTTTCSEEEEEETTEEEEEECHHHHHTT---TC-
T ss_pred -CEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEECCCH--HHHHHCCEEEEEECCEEECCCCHHHHHHH---HH-
T ss_conf -98998455446887899999999999847--98899973638--78986898999639965136899999985---32-
Q ss_pred CCCCCCCCCCHHH---HHHHHHCCCC--CCCC-CCHHHHHHHHHC-CHHH---HHHH-----HHHHHHH-HHCCCCCCC-
Q ss_conf 7999987679244---5443102799--9876-777789999852-9133---5689-----9988754-200234576-
Q 000937 238 RCPDRKAVISRKD---QAQYWFHNEL--PHSF-VSVDMFHEKFKE-SPFG---KKLE-----EDLSQVY-YKSESKKSS- 300 (1218)
Q Consensus 238 ~~p~~~~~~~~~~---~~~~~~~~~~--~~~~-~~~~~~~~~~~~-~~~~---~~~~-----~~~~~~~-~~~~~~~~~- 300 (1218)
...+....+. ..+...+... .... ...........+ ++.. .... .....+. .++......
T Consensus 645 ---~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1321)
T 4f4c_A 645 ---LYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEERIGKD 721 (1321)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHCC--------------------------------------------------CCCCCC
T ss_pred ---HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHCCCH
T ss_conf ---79999996221222233233443322321112222234222222211022111013212456774025777531540
Q ss_pred ---------CCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-------HHCC-CCCCCCCHHHH
Q ss_conf ---------554544565999999999999999871647999999999999999987-------6134-68885300123
Q 000937 301 ---------VSFAVFSLSRWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMT-------LFLR-TGMEVDVFHAN 363 (1218)
Q Consensus 301 ---------~~~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~l~~al~~g~-------~f~~-~~~~~~~~~~~ 363 (1218)
........+.+ +.+...+..+..+++.++...+.+.+... .... .+.+.+.....
T Consensus 722 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1321)
T 4f4c_A 722 ALSRLKQELEENNAQKTNLF--------EILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQG 793 (1321)
T ss_dssp HHHHHHHTTTTSCCCCCCHH--------HHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTH
T ss_pred HHHHHHHHHHHCCCCCEEHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 38999999997078631099--------9999987789999999999999999999999999999987517934556678
Q ss_pred HHHHHHHHHHHH--HHHHHHCCHHHH-H-------HCCCEEEE--CCCCCCCC----HHHHHHHHHHHHH-------HHH
Q ss_conf 556789999999--998420023444-2-------00000001--03599865----4779998797982-------199
Q 000937 364 YFMGSLFYTLVI--LIVDGISEIPMS-L-------ERLAVFYK--QKEMCLYP----AWAYVIPATILKV-------PLS 420 (1218)
Q Consensus 364 ~~~~~~f~~~~~--~~~~~~~~v~~~-~-------~~~~~~~~--e~~~~~y~----~~~y~la~~l~~l-------p~~ 420 (1218)
.+....|..+.. .++......... . -+...|.+ +....++. +....+.....+. +..
T Consensus 794 ~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~ 873 (1321)
T 4f4c_A 794 HFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFR 873 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999998887349933321678884888850250599999999999
Q ss_pred H---HH---HHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9---97---96764200022243322766887989999999855689999750231011344756534568898885633
Q 000937 421 L---VE---SLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCFQLEVLQYGSSYYLVASLSH 494 (1218)
Q Consensus 421 ~---~~---~~i~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~ 494 (1218)
+ +. .++..++.-+..+ |.... ......+...+...++.
T Consensus 874 l~~~~~~~~~~i~~~~~~~~~~-----~~l~l-------------------------------v~l~~~~~~~~~~~~~~ 917 (1321)
T 4f4c_A 874 FSTVITTLVSMVAGIGLAFFYG-----WQMAL-------------------------------LIIAILPIVAFGQYLRG 917 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----HHHHH-------------------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHEEEEHHHH-----HHHHH-------------------------------HHHHHHHHHHHHHHHHH
T ss_conf 9999998653777702213786-----89999-------------------------------99998889999999999
Q ss_pred CCEECCCCCH---HHHHHCCCCCCCCCCCCCHHHHHHCCCCC--------------CCCC---CHHHH--HHHH-HHHHH
Q ss_conf 3100597600---01220244433578865277766106864--------------4775---20578--9999-99999
Q 000937 495 NVRLSSNNMI---VYFKLIHWKKILFTNTTIGREILKSRGLN--------------FDEY---FFWIS--LGAL-FGLAL 551 (1218)
Q Consensus 495 G~~~~~~~~~---~~~~~~~~~~~~~~~~~~G~~~l~~~~~~--------------~~~~---~~~~~--~~~l-~~~~i 551 (1218)
. ........ ..-....+.. ....|-..++.++.. .... ..+.. .... ....+
T Consensus 918 ~-~~~~~~~~~~~~~~~~~~~~~----e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 992 (1321)
T 4f4c_A 918 R-RFTGKNVKSASEFADSGKIAI----EAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYL 992 (1321)
T ss_dssp S-CCSSCSTTTSSHHHHHHHHHH----HHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9-999999999999888988999----99962798886141488999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCC--------------------CCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999998516998--------------------8888533-----------34776653356899988764333578
Q 000937 552 VFNFAFALALSFLKPP--------------------GSSPAMI-----------SHGKFSGIQRSKGSCDDEHVEDVDMN 600 (1218)
Q Consensus 552 ~f~~~~~~~l~~~~~~--------------------~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (1218)
....+++++....... ....... +..+.....+..++.+.. .
T Consensus 993 ~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-------~ 1065 (1321)
T 4f4c_A 993 LNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSL-------S 1065 (1321)
T ss_dssp HHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTT-------C
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------C
T ss_conf 999999875788753765421478999999998778899999999999999999999899986076657776-------6
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999776668885289999699999067001110027665410321038999687499999599981999999896999
Q 000937 601 AHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
.. . ..+.....++|+|++|+|+.. +...+|+|+|+.++|||.+||+||||||||||+++|.|.+
T Consensus 1066 ---~~-~-~~~~~~g~I~f~nVsf~Y~~~-----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1066 ---LA-G-EKKKLYGKVIFKNVRFAYPER-----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ---CC-S-BCCCCCCCEEEEEEEECCTTS-----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ---CC-C-CCCCCCCEEEEEEEEEECCCC-----------CCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf ---77-8-788888818999879857999-----------9882124516998898999998999981999999995686
Q ss_pred CCCCEEEEEEECCEECCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-----
Q ss_conf 898334599997970850---012223889506998899998999999998610399999455999999999982-----
Q 000937 681 TSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI----- 752 (1218)
Q Consensus 681 ~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l----- 752 (1218)
++. +|+|.+||.+... ..+++.++||+|++.++. -|++||+.|+. .+.+.+. +.+++.++..
T Consensus 1130 ~p~--~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~sd----~ei~~Al~~a~l~~~ 1199 (1321)
T 4f4c_A 1130 DTL--GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVTM----AQVEEAARLANIHNF 1199 (1321)
T ss_dssp CCS--SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSCH----HHHHHHHHHTTCHHH
T ss_pred CCC--CCEEEECCEEHHHCCHHHHHHHEEEECCCCEEEC-CCHHHHHHCCC---CCCCCCH----HHHHHHHHHHCCHHH
T ss_conf 389--9789999998654999999854599878997327-23999974549---9999999----999999998298499
Q ss_pred --CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf --987643333358887788989999999999995099677983999999999999999999999865988999954899
Q 000937 753 --ELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPS 830 (1218)
Q Consensus 753 --~l~~~~~~~~g~~~~~~lSgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 830 (1218)
.|++..||.+|..|. .||||||||++|||||+++|+||+||||||+||+.+...|++.|+++. +|+|+|+++|+++
T Consensus 1200 I~~Lp~GldT~vge~G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs 1277 (1321)
T 4f4c_A 1200 IAELPEGFETRVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN 1277 (1321)
T ss_dssp HHTSTTTTCSEETTTSC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS
T ss_pred HHCCCCCCCCEECCCCC-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHH
T ss_conf 97176789998238891-569999999999999971799899968111578999999999999973-9998999606899
Q ss_pred HHHHHHHCEEEEEECCCEEEEECCCC
Q ss_conf 88998515488991397999984799
Q 000937 831 IDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 831 ~~~~~~~d~~~~l~~~G~~v~~G~~~ 856 (1218)
. ...+|++++|. +|++++.|+++
T Consensus 1278 T--i~~aD~I~Vld-~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1278 T--VMNADCIAVVS-NGTIIEKGTHT 1300 (1321)
T ss_dssp T--TTTCSEEEEES-SSSEEEEECHH
T ss_pred H--HHHCCEEEEEE-CCEEEEECCHH
T ss_conf 9--99699999998-98999988889
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=575.05 Aligned_cols=743 Identities=18% Similarity=0.220 Sum_probs=362.2
Q ss_pred CCCCCCCCCCHHHCCCCEE---EEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH
Q ss_conf 8899898820210021303---99899988850677655---30388664532458889889999977430378874135
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP---QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~g~~~~~l~~~~~g~---~~G~I~lnG~~~~~~~~---r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~~l 77 (1218)
+.|+.|||||||.+...|. .+|+|.+||.++++.+. |+..+||+|++.+++. ||+||+.|+..-
T Consensus 421 ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~--------- 490 (1284)
T 3g5u_A 421 LVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRED--------- 490 (1284)
T ss_dssp EECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSS---------
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCC-CHHHHHHCCCCC---------
T ss_conf 9899999799999998078899973899999987757999998654898688753776-699997457989---------
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 64321466741049998823577776765531100089999982886424430027867767723221034777773099
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~~p 157 (1218)
..+++++++++.+.++.++.+++.+ .||.+|+.+ ..||||||||++|||+++.+|
T Consensus 491 -------------~~~~~~~~~~~~~~~~~~i~~l~~g-----------~~t~~~~~g-~~LSgGq~QriaiARal~~~p 545 (1284)
T 3g5u_A 491 -------------VTMDEIEKAVKEANAYDFIMKLPHQ-----------FDTLVGERG-AQLSGGQKQRIAIARALVRNP 545 (1284)
T ss_dssp -------------CCHHHHHHHHHHTTCHHHHHHSTTG-----------GGCCCSSSS-CSSCHHHHHHHHHHHHHHHCC
T ss_pred -------------CCHHHHHHHHHHHCCHHHHHHCCCC-----------CCCCCCCCC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf -------------9999999999982969999746563-----------345014787-865999999999999995299
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHHH----HH
Q ss_conf 62887527998847366999999999997724997999961699357820140889819818876482248999----77
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEF----FE 233 (1218)
Q Consensus 158 ~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~~----f~ 233 (1218)
+||+||||||+||+.++..+++.++.+. .|+|+|+..| +.+++..+|+|++|.+|+++++|+|++++.. ++
T Consensus 546 -~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH--~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 620 (1284)
T 3g5u_A 546 -KILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAH--RLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFK 620 (1284)
T ss_dssp -SEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECS--CHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHH
T ss_pred -CEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEEC--CHHHHHCCCEEEEEECCEEEEECCHHHHHHCCCHHHH
T ss_conf -9899979877779999999999999973--9998999940--7789974998999989999997889999867877999
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC-HHHHHHHHHCCHHHHHHHH--HHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 289879999876792445443102799987677-7789999852913356899--9887542002345765545445659
Q 000937 234 SCGFRCPDRKAVISRKDQAQYWFHNELPHSFVS-VDMFHEKFKESPFGKKLEE--DLSQVYYKSESKKSSVSFAVFSLSR 310 (1218)
Q Consensus 234 ~~G~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ 310 (1218)
-...+..... .....+... ........... ........+.......... .........+ .. .......+.
T Consensus 621 ~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~ 693 (1284)
T 3g5u_A 621 LVMTQTAGNE-IELGNEACK--SKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKE--AL--DEDVPPASF 693 (1284)
T ss_dssp HHHHTC--------------------------------------------------------------C--CCCCSCCCT
T ss_pred HHHHHHHCCC-CCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH--HH--HCCCCCHHH
T ss_conf 9997430022-111333333--2222234433333333200034543334456422332110245--55--313662589
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-------HHHH---HCCCCCCCCCHHHHHHHHHHHHHHHHH--HH
Q ss_conf 99999999999999871647999999999999999-------9876---134688853001235567899999999--98
Q 000937 311 WELFKACMSRELLLAKRNYFLYLFKTIQLIIIATM-------TMTL---FLRTGMEVDVFHANYFMGSLFYTLVIL--IV 378 (1218)
Q Consensus 311 ~~q~~~l~~R~~~~~~r~~~~~~~~~~~~l~~al~-------~g~~---f~~~~~~~~~~~~~~~~~~~f~~~~~~--~~ 378 (1218)
+. .+...++.+..+...++..++.+.+ ++.+ +...+...............+..+... .+
T Consensus 694 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 765 (1284)
T 3g5u_A 694 WR--------ILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFIT 765 (1284)
T ss_dssp TH--------HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--------HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99--------9998451579999999999999999999999999999998556850336779999999999999999999
Q ss_pred HHHCCHHH-HH-------HCCCEEEEC--CCCCCCC----HHHHH--------------HHHHHHHH---HHHHHHHHHH
Q ss_conf 42002344-42-------000000010--3599865----47799--------------98797982---1999979676
Q 000937 379 DGISEIPM-SL-------ERLAVFYKQ--KEMCLYP----AWAYV--------------IPATILKV---PLSLVESLVW 427 (1218)
Q Consensus 379 ~~~~~v~~-~~-------~~~~~~~~e--~~~~~y~----~~~y~--------------la~~l~~l---p~~~~~~~i~ 427 (1218)
........ .. .+...+.+- ....++. +.... ++..+..+ ...++..++.
T Consensus 766 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~ 845 (1284)
T 3g5u_A 766 FFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIII 845 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999983998887578998899999999999999999999999999999999999999
Q ss_pred HHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECC-CCCHHH
Q ss_conf 4200022243322766887989999999855689999750231011344756534568898885633310059-760001
Q 000937 428 TSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCFQLEVLQYGSSYYLVASLSHNVRLSS-NNMIVY 506 (1218)
Q Consensus 428 ~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~~~~-~~~~~~ 506 (1218)
....-|...+ .... ...+.+.................. .. .........-...|+.... ...-..
T Consensus 846 ~~~~~~~l~l----v~l~---~~p~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~e~l~gi~ti~a~~~e~~ 911 (1284)
T 3g5u_A 846 SLIYGWQLTL----LLLA---IVPIIAIAGVVEMKMLSGQALKDK-----KE--LEGSGKIATEAIENFRTVVSLTREQK 911 (1284)
T ss_dssp HHSSCSSSHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHHHTTCTTTTTCSSHHH
T ss_pred HHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 9999699999----9999---999999999999999999999999-----99--99999999999988999998465999
Q ss_pred HHH----------------CCCCCCCC------------CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 220----------------24443357------------88652777661068644775205789999999999999999
Q 000937 507 FKL----------------IHWKKILF------------TNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNFAFA 558 (1218)
Q Consensus 507 ~~~----------------~~~~~~~~------------~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~~~ 558 (1218)
+.. ..+..... .....|..++....++... +..+ ...+.+.....
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~------~~~~-~~~~~~~~~~~ 984 (1284)
T 3g5u_A 912 FETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFEN------VLLV-FSAIVFGAMAV 984 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTT------HHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH------HHHH-HHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999999999999909806999------9999-99999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCHHHHHCCC
Q ss_conf 99851699888885333477665335689998876433357899999776668885289999699999067001110027
Q 000937 559 LALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECG 638 (1218)
Q Consensus 559 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 638 (1218)
..+. ...+...++..+..+.....+..++.+.. ....... +.....++++|+++.|+..
T Consensus 985 ~~~~-~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-----~~~~~~~------~~~~g~i~~~~v~~~y~~~--------- 1043 (1284)
T 3g5u_A 985 GQVS-SFAPDYAKATVSASHIIRIIEKTPEIDSY-----STQGLKP------NMLEGNVQFSGVVFNYPTR--------- 1043 (1284)
T ss_dssp HHHT-SSSCCSTHHHHHHHHHHHHHHSCCSSSSC-----CSSCCCT------TTTSCCEEEEEEEBCCSCG---------
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----CCCCCCC------CCCCCCEEEEEEEEECCCC---------
T ss_conf 9999-99999999999999999998388766665-----5566545------6777857999989977999---------
Q ss_pred CCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCC---CCCCCEEEEECCCCCCC
Q ss_conf 665410321038999687499999599981999999896999898334599997970850---01222388950699889
Q 000937 639 LAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHS 715 (1218)
Q Consensus 639 ~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~q~~~~~ 715 (1218)
....+|+|+|+.+++||.+||+||||||||||+++|.|..++. +|+|.+||.+... ...++.++||+|++.++
T Consensus 1044 --~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~--~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 1119 (1284)
T 3g5u_A 1044 --PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM--AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF 1119 (1284)
T ss_dssp --GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS--EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC
T ss_pred --CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCEECCCCCHHHHHHCEEEECCCCCCC
T ss_conf --9870020305997699889998899997899999994686789--977989999800078999970268987787406
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH--H-HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 999899999999861039999945599999999--9-9829876433333588877889899999999999950996779
Q 000937 716 PHITIEESLFFSAWLRLAPQINSKTKADCVNHV--L-KTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIF 792 (1218)
Q Consensus 716 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~--l-~~l~l~~~~~~~~g~~~~~~lSgGerkrv~ia~~L~~~p~ill 792 (1218)
..||+||+.++...+ ..+.++..+..+.. . ..-.+.+..|+.+|..+ ..||||||||++|||+|+.+|++|+
T Consensus 1120 -~~ti~eNi~~~~~~~---~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G-~~LSgGq~Qrv~iARal~~~p~iLi 1194 (1284)
T 3g5u_A 1120 -DCSIAENIAYGDNSR---VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILL 1194 (1284)
T ss_dssp -SSBHHHHHTCCCSSC---CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS-CSSCHHHHHHHHHHHHHHHCCSSEE
T ss_pred -CCCHHHHHHCCCCCC---CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf -666999974668778---99999999999983959999727042456117888-9338999999999999974999999
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCC
Q ss_conf 8399999999999999999999986598899995489988998515488991397999984799
Q 000937 793 MDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 793 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 856 (1218)
|||||+|||+.+...+.+.|+++ .+|+|+|+++|+++. ...+|++++|. +|++++.|+.+
T Consensus 1195 LDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~--i~~~dri~vl~-~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1195 LDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST--IQNADLIVVIQ-NGKVKEHGTHQ 1254 (1284)
T ss_dssp EESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG--GGSCSEEEEEE-TBEEEEEECHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH--HHCCCEEEEEE-CCEEEEECCHH
T ss_conf 86875557999999999999986-799989999558799--98099899998-99899977899
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=402.69 Aligned_cols=204 Identities=23% Similarity=0.252 Sum_probs=167.9
Q ss_pred EEEEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCE
Q ss_conf 28999969999906700111002766541032103899968749999959998199999989699989833459999797
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.+. . ..|+++++.+++||+++|+||||||||||+++|+|...+. +|+|.+
T Consensus 356 ~~l~~~~l~~~~~--------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~I~~--- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDYG--------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKVEW--- 415 (607)
T ss_dssp EEEEECCEEEECS--------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BSCCCC---
T ss_pred EEEEEECEEEEEC--------------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CEEEEE---
T ss_conf 2899913098744--------------3-4899351532799899999999989999999996698888--628999---
Q ss_pred ECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 08500122238895069988999989999999986103999994559999999999829876433333588877889899
Q 000937 695 PKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 695 ~~~~~~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 774 (1218)
...++|++|+....+.+||.|++....... ....+.++++++.+++.+..+..++ .|||||
T Consensus 416 -------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe 476 (607)
T 3bk7_A 416 -------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGE 476 (607)
T ss_dssp -------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHH
T ss_pred -------EEEEEEEECCCCCCCCCCHHHHHHHHHCCC-------CCHHHHHHHHHHHCCCCHHHCCCHH-----HCCHHH
T ss_conf -------027999805766778984999997531258-------7789999999987699337549922-----379999
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEE
Q ss_conf 9999999999509967798399999999999999999999986-5988999954899889985154889913-9799998
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKT-GGRIIYS 852 (1218)
Q Consensus 775 rkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~ 852 (1218)
||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++ .|.|||+++|++. .+...+|++++|.. .|+++..
T Consensus 477 ~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~ 555 (607)
T 3bk7_A 477 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRA 555 (607)
T ss_dssp HHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEEC
T ss_conf 999999999974899899968744789999999999999999747989999909899-9998699999995983069742
Q ss_pred CCCCCC
Q ss_conf 479988
Q 000937 853 GPLGNH 858 (1218)
Q Consensus 853 G~~~~~ 858 (1218)
|++++.
T Consensus 556 g~p~~~ 561 (607)
T 3bk7_A 556 LPPMGM 561 (607)
T ss_dssp CCCEEH
T ss_pred CCHHHH
T ss_conf 898999
No 4
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=399.58 Aligned_cols=410 Identities=20% Similarity=0.232 Sum_probs=281.5
Q ss_pred CCCCCCCCCCCHHHCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCC-CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 988998988202100213039989998885067765530388664532-4588898899999774303788741356432
Q 000937 3 SLNDRIGFGLSVISWFCTGLVTGEVSYNGYKLEEFVPQKLSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRADILLEL 81 (1218)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~g~~~G~I~lnG~~~~~~~~r~~~~YV~Q~d-~l~~~lTVrEtL~faa~lk~~~~~~~l~~~~ 81 (1218)
.|.|+.|||||||.+...| |+| +|.+.... .-.+|++|+. .+++.+||.|++.+ ...+ .
T Consensus 465 ~LiGpNGsGKSTLLk~Lag---G~i--~g~~~~~~---~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~----------~ 524 (986)
T 2iw3_A 465 GICGPNGCGKSTLMRAIAN---GQV--DGFPTQEE---CRTVYVEHDIDGTHSDTSVLDFVFE--SGVG----------T 524 (986)
T ss_dssp EEECSTTSSHHHHHHHHHH---TCS--TTCCCTTT---SCEEETTCCCCCCCTTSBHHHHHHT--TCSS----------C
T ss_pred EEECCCCCCHHHHHHHHHC---CCC--CCCCCCCC---EEEEEECCCCCCCCCCCCHHHHHHH--HHCC----------H
T ss_conf 9999999879999999948---986--79766354---1699973564324557809999998--6127----------9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf 1466741049998823577776765531100089999982886-424430027867767723221034777773099628
Q 000937 82 SGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD-ICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKA 160 (1218)
Q Consensus 82 s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~-~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~~p~~I 160 (1218)
+ ..+..+++.+||. +..+..++ .||||||||++||++++.+| +|
T Consensus 525 --~---------------------------~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLArAL~~~P-~l 569 (986)
T 2iw3_A 525 --K---------------------------EAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALARAVLRNA-DI 569 (986)
T ss_dssp --H---------------------------HHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHHHHHTTC-SE
T ss_pred --H---------------------------HHHHHHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHCCC-CE
T ss_conf --9---------------------------9999999986998446439802-----07999999999999996499-99
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEE-EECCHHHHHHHHHHCCCCC
Q ss_conf 875279988473669999999999977249979999616993578201408898198188-7648224899977289879
Q 000937 161 MFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKIL-YHGPRESVLEFFESCGFRC 239 (1218)
Q Consensus 161 LlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~iv-y~G~~~~l~~~f~~~G~~~ 239 (1218)
|+|||||+|||..+...+++.|++ .|+|+|++.| ....+...+|++++|.+|+++ +.|+.++....-
T Consensus 570 LLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSH-dl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~------- 637 (986)
T 2iw3_A 570 LLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISH-DSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKC------- 637 (986)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECS-CHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHC-------
T ss_pred EEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEEC-CHHHHHHHCCEEEEEECCEEECCCCCHHHHHHHH-------
T ss_conf 999797667999999999999986----7998999979-8899998689999997994426779999998614-------
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99987679244544310279998767777899998529133568999887542002345765545445659999999999
Q 000937 240 PDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFKACMS 319 (1218)
Q Consensus 240 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~ 319 (1218)
+. .
T Consensus 638 ~~------------------------------------------------~----------------------------- 640 (986)
T 2iw3_A 638 PA------------------------------------------------A----------------------------- 640 (986)
T ss_dssp GG------------------------------------------------G-----------------------------
T ss_pred HH------------------------------------------------H-----------------------------
T ss_conf 88------------------------------------------------9-----------------------------
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCEEEECCC
Q ss_conf 99999871647999999999999999987613468885300123556789999999998420023444200000001035
Q 000937 320 RELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSLERLAVFYKQKE 399 (1218)
Q Consensus 320 R~~~~~~r~~~~~~~~~~~~l~~al~~g~~f~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~v~~~~~~~~~~~~e~~ 399 (1218)
+. ++ ....
T Consensus 641 -------~~---------------------~~--~l~~------------------------------------------ 648 (986)
T 2iw3_A 641 -------KA---------------------YE--ELSN------------------------------------------ 648 (986)
T ss_dssp -------GG---------------------SS--STTT------------------------------------------
T ss_pred -------HH---------------------HH--HHHH------------------------------------------
T ss_conf -------99---------------------98--6445------------------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99865477999879798219999796764200022243322766887989999999855689999750231011344756
Q 000937 400 MCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCFQLEV 479 (1218)
Q Consensus 400 ~~~y~~~~y~la~~l~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 479 (1218)
....
T Consensus 649 ---------------------------------------------------------------------~~~~------- 652 (986)
T 2iw3_A 649 ---------------------------------------------------------------------TDLE------- 652 (986)
T ss_dssp ---------------------------------------------------------------------CCCC-------
T ss_pred ---------------------------------------------------------------------HHHH-------
T ss_conf ---------------------------------------------------------------------4432-------
Q ss_pred HHHHHHHHHHHHHHCCCEECCCCCHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53456889888563331005976000122024443357886527776610686447752057899999999999999999
Q 000937 480 LQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNFAFAL 559 (1218)
Q Consensus 480 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~~~~ 559 (1218)
. .
T Consensus 653 ------------------~---~--------------------------------------------------------- 654 (986)
T 2iw3_A 653 ------------------F---K--------------------------------------------------------- 654 (986)
T ss_dssp ------------------C---C---------------------------------------------------------
T ss_pred ------------------C---C---------------------------------------------------------
T ss_conf ------------------0---3---------------------------------------------------------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCHHHHHCCCC
Q ss_conf 98516998888853334776653356899988764333578999997766688852899996999990670011100276
Q 000937 560 ALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGL 639 (1218)
Q Consensus 560 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 639 (1218)
.+.. .. ... .. . .....+.++|++++++.
T Consensus 655 ------~p~~--~~---------------~~~-----~~-----~-------~~~~mL~v~nLs~~Y~g----------- 683 (986)
T 2iw3_A 655 ------FPEP--GY---------------LEG-----VK-----T-------KQKAIVKVTNMEFQYPG----------- 683 (986)
T ss_dssp ------CCCC--CC---------------CTT-----CC-----S-------TTSEEEEEEEEEECCTT-----------
T ss_pred ------CCCC--CC---------------CCC-----CC-----C-------CCCCEEEEEEEEEEECC-----------
T ss_conf ------5655--54---------------334-----56-----6-------78706999846998189-----------
Q ss_pred CCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCCCCCCCEEEEECCCCCC----C
Q ss_conf 654103210389996874999995999819999998969998983345999979708500122238895069988----9
Q 000937 640 AHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIH----S 715 (1218)
Q Consensus 640 ~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~----~ 715 (1218)
..+.+|+|+|+.+++|++++|+||||||||||+++|+|...+. +|+|.++|. ..++|++|+... .
T Consensus 684 -~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~--sG~I~~~~~--------~~I~yv~Q~~~~~l~~~ 752 (986)
T 2iw3_A 684 -TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT--SGEVYTHEN--------CRIAYIKQHAFAHIESH 752 (986)
T ss_dssp -CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS--EEEEEECTT--------CCEEEECHHHHHHGGGC
T ss_pred -CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CEEEEECCC--------CCEEEECCCHHHHHHCC
T ss_conf -8741343227998289789998999987999999995798888--608998686--------42576313024332100
Q ss_pred CCCCHHHHHHHHHHHC------------CC--------------------------------------------------
Q ss_conf 9998999999998610------------39--------------------------------------------------
Q 000937 716 PHITIEESLFFSAWLR------------LA-------------------------------------------------- 733 (1218)
Q Consensus 716 ~~lTv~e~l~~~~~l~------------~~-------------------------------------------------- 733 (1218)
...|++|++.+.-... ..
T Consensus 753 ~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~ 832 (986)
T 2iw3_A 753 LDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSE 832 (986)
T ss_dssp TTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTC
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf 11479999887750450255554332103435554420001123201234444555431222002100025543200000
Q ss_pred --CC----------------------------------CCHHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHH
Q ss_conf --99----------------------------------994559999999999829876-4-333335888778898999
Q 000937 734 --PQ----------------------------------INSKTKADCVNHVLKTIELDG-I-KESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 734 --~~----------------------------------~~~~~~~~~~~~~l~~l~l~~-~-~~~~~g~~~~~~lSgGer 775 (1218)
.. .......++++++++.++|.+ . .+..+ .+||||||
T Consensus 833 ~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQk 907 (986)
T 2iw3_A 833 RWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQK 907 (986)
T ss_dssp EEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCC-----CCCCHHHH
T ss_conf 1234323443210167776667665544324555430223234799999999976998054448980-----42399999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECC
Q ss_conf 9999999995099677983999999999999999999999865988999954899889985154889913979999847
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854 (1218)
Q Consensus 776 krv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 854 (1218)
||++||++|+.+|++|+|||||+|||..+...+.+.|+++ +.|||+++|++. .+...+|++++|. +|+++..|+
T Consensus 908 QRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~-~G~Iv~~G~ 981 (986)
T 2iw3_A 908 VKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVK-DGRMTPSGH 981 (986)
T ss_dssp HHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCB-TTBCCC---
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECC
T ss_conf 9999999998399999997986577999999999999974---997999979899-9998589999998-999998687
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=393.99 Aligned_cols=217 Identities=21% Similarity=0.235 Sum_probs=168.3
Q ss_pred EEEEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCE
Q ss_conf 28999969999906700111002766541032103899968749999959998199999989699989833459999797
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..+.++|++..+. ...++.+++.+++||+++|+||||||||||+++|+|..++. +|+|.+++.
T Consensus 268 ~~l~~~~l~~~~~---------------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~~~ 330 (538)
T 3ozx_A 268 TKMKWTKIIKKLG---------------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD--EGSVTPEKQ 330 (538)
T ss_dssp EEEEECCEEEEET---------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS--BCCEESSCC
T ss_pred CEEEECCEEEEEC---------------CEEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCE
T ss_conf 0699823399979---------------88998266468899899999999998999999995788899--818999984
Q ss_pred ECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 08500122238895069988999989999999986103999994559999999999829876433333588877889899
Q 000937 695 PKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 695 ~~~~~~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 774 (1218)
.++|++|+.......||+|++.+..... .. .....++++++.+++.+..+..++ .|||||
T Consensus 331 ---------~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq 390 (538)
T 3ozx_A 331 ---------ILSYKPQRIFPNYDGTVQQYLENASKDA----LS--TSSWFFEEVTKRLNLHRLLESNVN-----DLSGGE 390 (538)
T ss_dssp ---------CEEEECSSCCCCCSSBHHHHHHHHCSST----TC--TTSHHHHHTTTTTTGGGCTTSBGG-----GCCHHH
T ss_pred ---------EEEEECHHCCCCCCCCHHHHHHHHHHHC----CC--HHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHH
T ss_conf ---------5676140003454777999998755311----21--169999999987599778628932-----279999
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEE
Q ss_conf 9999999999509967798399999999999999999999986-5988999954899889985154889913-9799998
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKT-GGRIIYS 852 (1218)
Q Consensus 775 rkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~ 852 (1218)
||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||+++|++. ++...+|++++|.. .|.....
T Consensus 391 ~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~ 469 (538)
T 3ozx_A 391 LQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLA 469 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCC
T ss_conf 999999999970899899969865799999999999999999738989999958899-9999689999996985101167
Q ss_pred CCCCCCCHHHHHHHHCC
Q ss_conf 47998851123131119
Q 000937 853 GPLGNHSSRVIEYFEGI 869 (1218)
Q Consensus 853 G~~~~~~~~~~~~f~~~ 869 (1218)
+++.+......+++..+
T Consensus 470 ~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 470 TSPVTLKTGMNEFLREL 486 (538)
T ss_dssp CCCEEHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC
T ss_conf 98477887888887416
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=392.75 Aligned_cols=198 Identities=24% Similarity=0.337 Sum_probs=143.3
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHC---------------CCC--CC--CEEEEEEECCEECCCCCCC-
Q ss_conf 103210389996874999995999819999998969---------------998--98--3345999979708500122-
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG---------------RKT--SG--CFKGEIKVNGYPKIQETFV- 702 (1218)
Q Consensus 643 ~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g---------------~~~--~~--~~~G~i~~~g~~~~~~~~~- 702 (1218)
..+|+|+|+.+++||+++|+||||||||||+++|.+ ... .+ ...|.+.+++.+.......
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred CCCCCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 01234541674589889999117988889999998998887754202454443210121246752674056677887764
Q ss_pred -------------------------------------------CEEEEECCCCCCC------------------------
Q ss_conf -------------------------------------------2388950699889------------------------
Q 000937 703 -------------------------------------------RVSGYCEQTDIHS------------------------ 715 (1218)
Q Consensus 703 -------------------------------------------~~~~yv~q~~~~~------------------------ 715 (1218)
...+++.|+..++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHEEE
T ss_conf 15342046789998612513333166611144357777565135663474202225555110565567554744442021
Q ss_pred --------CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf --------999899999999861039999945599999999998298764-33333588877889899999999999950
Q 000937 716 --------PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGIPGVSGLSTEQRKRLTIGVELVA 786 (1218)
Q Consensus 716 --------~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~g~~~~~~lSgGerkrv~ia~~L~~ 786 (1218)
..+||.|++.+.... ...+++.+.+..+++... .+..+ ..|||||||||+||++|+.
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iAraL~~ 560 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHR 560 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHCCHHHHHHHHHHH---------HHHHHHHHHHHHCCCCHHHCCCCC-----HHCCHHHHHHHHHHHHHHH
T ss_conf 57778887647799999999874---------657899999998699601204970-----1289999999999999960
Q ss_pred CC---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE-----CCCEEEEECCCC
Q ss_conf 99---67798399999999999999999999986598899995489988998515488991-----397999984799
Q 000937 787 NP---SIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK-----TGGRIIYSGPLG 856 (1218)
Q Consensus 787 ~p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~ 856 (1218)
+| ++|+|||||+|||+.+...+.+.|++++++|.|||+++|+++ ....+|++++|. ++|++++.|+++
T Consensus 561 ~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 561 RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp CCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEECCCCCCCCCEEEEECCHH
T ss_conf 88899489996987799999999999999999977998999959889--99859999996577678898899966999
No 7
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=391.99 Aligned_cols=204 Identities=22% Similarity=0.260 Sum_probs=166.7
Q ss_pred EEEEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCE
Q ss_conf 28999969999906700111002766541032103899968749999959998199999989699989833459999797
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.+. . ..++++++.+++||+++|+||||||||||+++|+|..++. +|+|.+
T Consensus 286 ~~l~~~~l~~~~~--------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~i~~--- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDYG--------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKIEW--- 345 (538)
T ss_dssp EEEEECCEEEEET--------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BCCCCC---
T ss_pred EEEEEEEEEEEEC--------------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CEEEEE---
T ss_conf 1899930799989--------------9-8999074412899899998899999999999996799899--718998---
Q ss_pred ECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 08500122238895069988999989999999986103999994559999999999829876433333588877889899
Q 000937 695 PKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 695 ~~~~~~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 774 (1218)
...++|++|+....+.+||.|++........ ...+.++++++.+++.+..+..++ .|||||
T Consensus 346 -------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe 406 (538)
T 1yqt_A 346 -------DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVN-----ELSGGE 406 (538)
T ss_dssp -------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGG-----GCCHHH
T ss_pred -------CCEEEEEECCCCCCCCCCHHHHHHHHHCCCC-------CHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHH
T ss_conf -------7469998267767888859999986403688-------789999999997499156539944-----489999
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEE
Q ss_conf 9999999999509967798399999999999999999999986-5988999954899889985154889913-9799998
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKT-GGRIIYS 852 (1218)
Q Consensus 775 rkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~ 852 (1218)
|||++||++|+.+|++|+|||||+|||..+...+.+.|+++++ .|.|||+++|++. ++...+|++++|.. .|+++..
T Consensus 407 ~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~ 485 (538)
T 1yqt_A 407 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRA 485 (538)
T ss_dssp HHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEEC
T ss_conf 999999999972899899939801089999999999999999867989999939899-9999689999990883157404
Q ss_pred CCCCCC
Q ss_conf 479988
Q 000937 853 GPLGNH 858 (1218)
Q Consensus 853 G~~~~~ 858 (1218)
|++++.
T Consensus 486 g~~~~~ 491 (538)
T 1yqt_A 486 LPPMGM 491 (538)
T ss_dssp CCCEEH
T ss_pred CCHHHH
T ss_conf 898999
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=382.05 Aligned_cols=201 Identities=20% Similarity=0.225 Sum_probs=158.5
Q ss_pred EEEECEEEEEECC-----EEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 0321038999687-----49999959998199999989699989833459999797085001222388950699889999
Q 000937 644 QLLDDVTGTLRPG-----VLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHI 718 (1218)
Q Consensus 644 ~iL~~vs~~i~~G-----~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~l 718 (1218)
.+++++++.+++| |+++|+||||||||||+++|+|..++. +|+. . ....++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~----~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQD------I----PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCCC------C----CSCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCC--CCCC------C----CCCCEEEECCCCCCCCCC
T ss_conf 446865899706851465189998888986999999996578787--8858------6----677379860544445786
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 89999999986103999994559999999999829876433333588877889899999999999950996779839999
Q 000937 719 TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798 (1218)
Q Consensus 719 Tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkrv~ia~~L~~~p~illlDEPts 798 (1218)
||+|++... .+. . ....+.++++++.+++.+..+..++ .|||||||||+||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~---~~~~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--Q---FLNPQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--T---TTSHHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--C---CCCHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--3---2468999999987498346519932-----389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCCCCHHHHHHHHCC
Q ss_conf 999999999999999998-65988999954899889985154889913-979999847998851123131119
Q 000937 799 GLDARAAAIVMRAVKNVA-DTGRTIVCTIHQPSIDIFESFDELILLKT-GGRIIYSGPLGNHSSRVIEYFEGI 869 (1218)
Q Consensus 799 gLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~G~~~~~~~~~~~~f~~~ 869 (1218)
|||+.++..+.+.|++++ +.|.|||+++|++. ++...+|++++|.. .|+++..|++++......++...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=340.06 Aligned_cols=199 Identities=26% Similarity=0.436 Sum_probs=145.2
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHH---------HHHHCCCCC-C---CEE------EEEEECCEECCCCC----
Q ss_conf 032103899968749999959998199999---------989699989-8---334------59999797085001----
Q 000937 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLL---------DVLAGRKTS-G---CFK------GEIKVNGYPKIQET---- 700 (1218)
Q Consensus 644 ~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl---------~~l~g~~~~-~---~~~------G~i~~~g~~~~~~~---- 700 (1218)
..|+|+|+.+++|++++|+||||||||||+ +.+.+.... + ... +.+.++..+.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 43365312871895999992588881545777777899987403445666533335510114257631565566555564
Q ss_pred ----------------------------------------CCCEEEEECCCCCCCC------------------------
Q ss_conf ----------------------------------------2223889506998899------------------------
Q 000937 701 ----------------------------------------FVRVSGYCEQTDIHSP------------------------ 716 (1218)
Q Consensus 701 ----------------------------------------~~~~~~yv~q~~~~~~------------------------ 716 (1218)
..+..|++.++..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 30223678899986126687750455543111146664432367634877410167615632201464356665543015
Q ss_pred --------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --------998999999998610399999455999999999982987643333358887788989999999999995099
Q 000937 717 --------HITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANP 788 (1218)
Q Consensus 717 --------~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkrv~ia~~L~~~p 788 (1218)
.+||.|++.|... .....++.++++.++|.... .+.+ ...||||||||++||++|+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~---------~~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN---------IPSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT---------CHHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHCCHHHHHHHHHC---------CHHHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 677787740779999998751---------50589999999981886333---1687-1579999999999999996287
Q ss_pred ---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE-----CCCEEEEECCCCC
Q ss_conf ---67798399999999999999999999986598899995489988998515488991-----3979999847998
Q 000937 789 ---SIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK-----TGGRIIYSGPLGN 857 (1218)
Q Consensus 789 ---~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~~ 857 (1218)
++|+|||||+|||+.+...+++.|++++++|.|||+++|++ ++...+|++++|. ++|++++.|++++
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpee 899 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPEE 899 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCHHH
T ss_conf 88978999798889999999999999999996699899993799--9997299999966877778978999769999
No 10
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=338.61 Aligned_cols=221 Identities=20% Similarity=0.282 Sum_probs=191.3
Q ss_pred EEEEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCE
Q ss_conf 28999969999906700111002766541032103899968749999959998199999989699989833459999797
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++++... .+...+|+|+|+.+++||+++|+||||||||||+++|+|...+. +|+|.++|+
T Consensus 23 ~mi~v~~ls~~y~~~----------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~--~G~I~i~G~ 90 (366)
T 3tui_C 23 HMIKLSNITKVFHQG----------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT--EGSVLVDGQ 90 (366)
T ss_dssp CCEEEEEEEEEEECS----------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTE
T ss_pred CEEEEEEEEEEECCC----------CCCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC--CEEEEECCE
T ss_conf 659998489993898----------87737887469998489899999589955999999996699999--629999999
Q ss_pred ECCCC------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 08500------122238895069988999989999999986103999994559999999999829876433333588877
Q 000937 695 PKIQE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768 (1218)
Q Consensus 695 ~~~~~------~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~ 768 (1218)
+.... ..++.++||+|+..+++.+||+||+.+....+. ....+.+++++++++.++|.+..+..+ .
T Consensus 91 ~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~ 162 (366)
T 3tui_C 91 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----S 162 (366)
T ss_dssp ECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCCT-----T
T ss_pred ECCCCCHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHCCCH-----H
T ss_conf 98758987999873868999278756888899999999998659---987899999999999769934761994-----5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCC
Q ss_conf 88989999999999995099677983999999999999999999999865-98899995489988998515488991397
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~lSgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ .+...+|++++|. +|
T Consensus 163 ~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~-~G 240 (366)
T 3tui_C 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVIS-NG 240 (366)
T ss_dssp TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TT
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CC
T ss_conf 589999999999999966999999979875689999999999999999737999999956899-9999699999998-99
Q ss_pred EEEEECCCCC
Q ss_conf 9999847998
Q 000937 848 RIIYSGPLGN 857 (1218)
Q Consensus 848 ~~v~~G~~~~ 857 (1218)
++++.|++++
T Consensus 241 ~iv~~g~~~e 250 (366)
T 3tui_C 241 ELIEQDTVSE 250 (366)
T ss_dssp EEEECCBHHH
T ss_pred EEEEECCHHH
T ss_conf 8999758999
Done!