Query 000938
Match_columns 1218
No_of_seqs 299 out of 1393
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 11:10:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 6.4E-48 1.4E-52 450.7 17.2 336 867-1217 112-531 (635)
2 TIGR02250 FCP1_euk FCP1-like p 100.0 7.9E-34 1.7E-38 285.0 13.2 155 899-1063 1-156 (156)
3 KOG1605 TFIIF-interacting CTD 100.0 1.7E-33 3.7E-38 303.4 9.4 175 897-1122 82-258 (262)
4 TIGR02251 HIF-SF_euk Dullard-l 100.0 6E-30 1.3E-34 256.9 13.7 158 904-1103 1-159 (162)
5 PF03031 NIF: NLI interacting 100.0 2.1E-29 4.5E-34 247.7 13.2 157 905-1117 1-159 (159)
6 TIGR02245 HAD_IIID1 HAD-superf 99.9 3.7E-27 8.1E-32 245.5 13.2 162 900-1122 17-190 (195)
7 KOG2832 TFIIF-interacting CTD 99.9 3.5E-23 7.5E-28 229.6 12.6 160 900-1125 185-345 (393)
8 smart00577 CPDc catalytic doma 99.8 2.1E-20 4.5E-25 184.6 13.1 144 903-1064 1-145 (148)
9 COG5190 FCP1 TFIIF-interacting 99.8 6E-20 1.3E-24 207.6 9.4 180 892-1122 200-380 (390)
10 COG5190 FCP1 TFIIF-interacting 99.5 7.7E-15 1.7E-19 166.6 9.1 274 896-1201 18-350 (390)
11 PF12738 PTCB-BRCT: twin BRCT 99.4 8.2E-13 1.8E-17 113.7 6.7 63 1131-1198 1-63 (63)
12 PF00533 BRCT: BRCA1 C Terminu 99.3 2.8E-12 6.1E-17 111.2 7.2 75 1124-1203 2-78 (78)
13 KOG3226 DNA repair protein [Re 99.3 2.7E-12 5.9E-17 143.3 4.9 88 1125-1217 315-402 (508)
14 smart00292 BRCT breast cancer 99.2 8.2E-11 1.8E-15 99.6 7.3 77 1126-1206 1-80 (80)
15 cd00027 BRCT Breast Cancer Sup 99.1 1.8E-10 3.8E-15 95.4 7.9 71 1130-1204 1-72 (72)
16 KOG0323 TFIIF-interacting CTD 99.1 4.8E-12 1E-16 150.7 -3.0 586 139-988 23-634 (635)
17 PLN03122 Poly [ADP-ribose] pol 98.5 2.4E-07 5.2E-12 114.4 7.4 87 1124-1216 186-277 (815)
18 PLN03123 poly [ADP-ribose] pol 98.4 4.3E-07 9.4E-12 114.0 7.1 89 1123-1216 389-480 (981)
19 KOG1929 Nucleotide excision re 98.0 4.2E-06 9.1E-11 103.3 5.2 100 1114-1218 90-190 (811)
20 PRK14350 ligA NAD-dependent DN 97.8 6.5E-05 1.4E-09 92.0 10.3 73 1126-1202 592-664 (669)
21 PRK07956 ligA NAD-dependent DN 97.7 0.00014 3.1E-09 89.2 10.4 74 1127-1204 590-663 (665)
22 KOG1929 Nucleotide excision re 97.7 1.9E-05 4.1E-10 97.7 2.5 97 1115-1216 481-577 (811)
23 PRK14351 ligA NAD-dependent DN 97.6 0.00026 5.6E-09 87.3 11.0 75 1126-1204 608-683 (689)
24 PRK06063 DNA polymerase III su 97.6 0.00017 3.7E-09 81.2 7.8 72 1127-1203 232-305 (313)
25 KOG3524 Predicted guanine nucl 97.5 3.8E-05 8.3E-10 92.6 1.2 82 1125-1216 116-197 (850)
26 COG0272 Lig NAD-dependent DNA 97.4 0.00039 8.4E-09 84.8 9.1 72 1126-1201 593-664 (667)
27 PRK06195 DNA polymerase III su 97.4 0.00038 8.2E-09 78.0 8.0 71 1126-1200 219-303 (309)
28 cd01427 HAD_like Haloacid deha 97.3 0.00032 6.9E-09 64.3 5.6 62 906-996 1-63 (139)
29 TIGR00575 dnlj DNA ligase, NAD 97.2 0.00051 1.1E-08 84.3 6.9 69 1126-1198 583-651 (652)
30 KOG3548 DNA damage checkpoint 97.0 0.00051 1.1E-08 85.2 4.1 93 1119-1217 916-1036(1176)
31 TIGR01684 viral_ppase viral ph 96.9 0.0021 4.6E-08 72.6 7.2 75 898-1009 120-196 (301)
32 TIGR01681 HAD-SF-IIIC HAD-supe 96.8 0.00081 1.8E-08 66.0 3.3 81 958-1046 29-120 (128)
33 KOG0966 ATP-dependent DNA liga 96.7 0.0034 7.4E-08 77.5 7.9 84 1125-1212 631-717 (881)
34 PHA03398 viral phosphatase sup 96.7 0.0034 7.3E-08 71.1 6.8 74 898-1008 122-197 (303)
35 COG5275 BRCT domain type II [G 96.6 0.0041 8.8E-08 67.5 6.6 80 1120-1203 149-229 (276)
36 KOG2043 Signaling protein SWIF 96.5 0.0031 6.8E-08 79.8 6.1 79 1131-1217 660-739 (896)
37 TIGR01662 HAD-SF-IIIA HAD-supe 96.5 0.012 2.7E-07 56.8 8.7 101 905-1043 1-112 (132)
38 TIGR01685 MDP-1 magnesium-depe 96.5 0.0045 9.8E-08 64.9 6.0 99 955-1057 42-153 (174)
39 KOG4362 Transcriptional regula 96.3 0.0043 9.4E-08 76.1 5.3 79 1130-1216 478-562 (684)
40 TIGR01261 hisB_Nterm histidino 96.1 0.018 3.8E-07 59.4 7.7 108 905-1044 2-130 (161)
41 TIGR01686 FkbH FkbH-like domai 95.9 0.0096 2.1E-07 66.8 5.4 107 903-1045 2-114 (320)
42 TIGR01664 DNA-3'-Pase DNA 3'-p 95.9 0.03 6.5E-07 57.8 8.5 110 903-1044 12-137 (166)
43 KOG2481 Protein required for n 95.9 0.007 1.5E-07 72.0 4.2 80 1125-1216 325-415 (570)
44 PHA02530 pseT polynucleotide k 95.9 0.0073 1.6E-07 66.0 4.0 130 901-1057 155-292 (300)
45 PF05152 DUF705: Protein of un 95.7 0.027 5.8E-07 63.7 7.6 75 898-1009 116-192 (297)
46 TIGR01656 Histidinol-ppas hist 95.6 0.049 1.1E-06 54.4 8.3 65 905-996 1-81 (147)
47 COG4996 Predicted phosphatase 95.5 0.025 5.4E-07 58.1 5.7 117 906-1048 2-130 (164)
48 TIGR01672 AphA HAD superfamily 95.5 0.024 5.2E-07 62.2 6.0 101 899-1009 58-168 (237)
49 COG5163 NOP7 Protein required 95.4 0.014 3E-07 67.8 4.2 93 1113-1216 333-439 (591)
50 PRK08942 D,D-heptose 1,7-bisph 95.3 0.085 1.8E-06 54.1 9.0 53 904-984 3-56 (181)
51 TIGR00213 GmhB_yaeD D,D-heptos 95.3 0.046 9.9E-07 56.1 7.0 28 957-984 25-53 (176)
52 TIGR01533 lipo_e_P4 5'-nucleot 95.3 0.048 1E-06 60.9 7.7 89 901-1009 72-172 (266)
53 PF12689 Acid_PPase: Acid Phos 95.0 0.038 8.2E-07 58.1 5.7 121 904-1045 3-135 (169)
54 PRK11009 aphA acid phosphatase 93.4 0.14 2.9E-06 56.5 5.9 53 955-1008 111-169 (237)
55 PRK05446 imidazole glycerol-ph 93.3 0.33 7.2E-06 56.4 9.1 54 903-982 1-55 (354)
56 TIGR02253 CTE7 HAD superfamily 92.9 0.12 2.5E-06 53.8 4.2 84 956-1044 92-177 (221)
57 PRK08238 hypothetical protein; 92.8 0.15 3.2E-06 61.3 5.5 91 957-1058 71-165 (479)
58 KOG3524 Predicted guanine nucl 92.7 0.03 6.5E-07 68.8 -0.2 95 1116-1216 199-293 (850)
59 PF13419 HAD_2: Haloacid dehal 92.3 0.17 3.6E-06 49.0 4.4 86 955-1045 74-161 (176)
60 TIGR01689 EcbF-BcbF capsule bi 92.0 0.38 8.2E-06 48.6 6.5 50 958-1008 24-86 (126)
61 TIGR02254 YjjG/YfnB HAD superf 91.0 0.32 7E-06 50.3 5.1 84 956-1044 95-180 (224)
62 TIGR01663 PNK-3'Pase polynucle 90.9 0.55 1.2E-05 57.3 7.6 114 901-1044 165-294 (526)
63 TIGR01449 PGP_bact 2-phosphogl 90.8 0.34 7.3E-06 50.0 4.9 97 956-1057 83-181 (213)
64 PF08645 PNK3P: Polynucleotide 90.6 0.42 9.1E-06 49.4 5.4 53 905-982 1-54 (159)
65 TIGR01509 HAD-SF-IA-v3 haloaci 90.2 0.4 8.6E-06 47.8 4.7 83 957-1045 84-168 (183)
66 TIGR01668 YqeG_hyp_ppase HAD s 90.1 0.62 1.4E-05 48.1 6.2 93 902-1044 23-118 (170)
67 PLN02770 haloacid dehalogenase 89.7 0.46 1E-05 51.4 5.0 97 956-1057 106-204 (248)
68 TIGR01428 HAD_type_II 2-haloal 89.4 0.46 1E-05 48.9 4.6 84 957-1045 91-176 (198)
69 PRK13288 pyrophosphatase PpaX; 89.4 0.75 1.6E-05 48.0 6.1 95 956-1055 80-176 (214)
70 PRK13222 phosphoglycolate phos 89.2 0.69 1.5E-05 48.0 5.7 87 956-1047 91-179 (226)
71 TIGR01454 AHBA_synth_RP 3-amin 89.1 0.68 1.5E-05 48.0 5.6 97 956-1057 73-171 (205)
72 PLN03243 haloacid dehalogenase 88.5 0.55 1.2E-05 51.9 4.6 86 957-1047 108-195 (260)
73 TIGR01993 Pyr-5-nucltdase pyri 88.0 0.42 9.1E-06 48.8 3.1 83 957-1045 83-169 (184)
74 PRK06769 hypothetical protein; 87.9 1.2 2.5E-05 46.2 6.3 28 957-984 27-55 (173)
75 PRK09449 dUMP phosphatase; Pro 87.6 0.71 1.5E-05 48.3 4.6 83 957-1044 94-178 (224)
76 TIGR01422 phosphonatase phosph 87.5 0.83 1.8E-05 49.1 5.1 96 957-1056 98-196 (253)
77 TIGR01491 HAD-SF-IB-PSPlk HAD- 87.1 0.95 2.1E-05 46.1 5.1 50 957-1007 79-129 (201)
78 PRK10563 6-phosphogluconate ph 87.0 0.45 9.7E-06 49.8 2.8 96 956-1057 86-182 (221)
79 TIGR00338 serB phosphoserine p 86.1 1.1 2.5E-05 46.6 5.2 48 957-1005 84-132 (219)
80 COG2179 Predicted hydrolase of 86.1 1.3 2.9E-05 47.3 5.6 115 897-1061 21-141 (175)
81 PRK00192 mannosyl-3-phosphogly 85.9 1.5 3.2E-05 48.1 6.1 57 904-997 4-61 (273)
82 PF13344 Hydrolase_6: Haloacid 85.6 1.5 3.3E-05 42.1 5.3 34 961-994 17-51 (101)
83 TIGR01675 plant-AP plant acid 85.2 3.2 7E-05 46.0 8.3 116 874-1009 47-172 (229)
84 TIGR01459 HAD-SF-IIA-hyp4 HAD- 84.9 1.6 3.4E-05 47.2 5.7 67 903-1008 7-76 (242)
85 TIGR01489 DKMTPPase-SF 2,3-dik 84.6 2.1 4.6E-05 43.0 6.1 49 957-1007 71-120 (188)
86 PRK10826 2-deoxyglucose-6-phos 84.3 1.3 2.8E-05 46.7 4.5 94 957-1055 91-186 (222)
87 PRK13226 phosphoglycolate phos 84.0 1.8 3.9E-05 46.3 5.6 87 956-1047 93-181 (229)
88 PF08282 Hydrolase_3: haloacid 83.8 1.3 2.8E-05 45.6 4.2 35 961-995 18-53 (254)
89 TIGR03333 salvage_mtnX 2-hydro 83.7 2 4.3E-05 45.5 5.7 51 956-1006 68-119 (214)
90 PTZ00445 p36-lilke protein; Pr 83.3 2.3 5E-05 47.1 6.0 64 899-986 38-104 (219)
91 PRK14988 GMP/IMP nucleotidase; 83.2 1.1 2.3E-05 48.1 3.5 94 957-1055 92-187 (224)
92 PRK11587 putative phosphatase; 83.2 1.9 4.2E-05 45.4 5.4 86 956-1047 81-168 (218)
93 COG0561 Cof Predicted hydrolas 82.9 2.7 5.9E-05 45.4 6.4 59 903-998 2-61 (264)
94 PRK13223 phosphoglycolate phos 82.7 2 4.3E-05 47.6 5.4 86 957-1047 100-187 (272)
95 TIGR01670 YrbI-phosphatas 3-de 82.0 3.7 8.1E-05 41.8 6.7 75 957-1047 29-105 (154)
96 PRK10725 fructose-1-P/6-phosph 82.0 1.4 3E-05 44.8 3.6 86 957-1048 87-173 (188)
97 TIGR01488 HAD-SF-IB Haloacid D 81.5 2.4 5.2E-05 42.4 5.1 49 957-1006 72-121 (177)
98 PLN02575 haloacid dehalogenase 81.3 1.8 3.9E-05 51.1 4.6 86 957-1047 215-302 (381)
99 TIGR01456 CECR5 HAD-superfamil 80.9 2.7 5.8E-05 47.8 5.7 15 905-919 1-15 (321)
100 TIGR02009 PGMB-YQAB-SF beta-ph 80.5 1.5 3.3E-05 44.1 3.3 83 957-1046 87-171 (185)
101 COG2503 Predicted secreted aci 80.2 2.6 5.5E-05 47.6 5.1 24 896-919 71-94 (274)
102 TIGR02463 MPGP_rel mannosyl-3- 79.9 2.7 5.9E-05 44.2 5.0 34 963-996 21-55 (221)
103 PRK09456 ?-D-glucose-1-phospha 79.6 1.2 2.7E-05 46.2 2.4 89 955-1047 81-171 (199)
104 TIGR01487 SPP-like sucrose-pho 79.5 3.9 8.4E-05 43.0 6.0 39 960-998 20-59 (215)
105 TIGR02461 osmo_MPG_phos mannos 79.2 4.4 9.5E-05 43.9 6.5 36 961-996 18-54 (225)
106 COG1011 Predicted hydrolase (H 79.1 4 8.6E-05 42.5 5.9 85 957-1046 98-183 (229)
107 PLN02779 haloacid dehalogenase 79.0 2.5 5.4E-05 47.3 4.7 96 957-1056 143-241 (286)
108 TIGR01549 HAD-SF-IA-v1 haloaci 78.8 4.6 0.0001 39.8 6.0 82 956-1044 62-144 (154)
109 TIGR01544 HAD-SF-IE haloacid d 78.1 3 6.4E-05 47.5 4.9 52 956-1007 119-174 (277)
110 PRK03669 mannosyl-3-phosphogly 77.6 4.8 0.0001 44.1 6.3 58 902-996 5-63 (271)
111 TIGR01548 HAD-SF-IA-hyp1 haloa 77.4 3.8 8.1E-05 42.6 5.1 81 958-1044 106-188 (197)
112 TIGR00099 Cof-subfamily Cof su 77.3 4.6 0.0001 43.5 6.0 37 961-997 19-56 (256)
113 PF11019 DUF2608: Protein of u 77.2 2.9 6.2E-05 46.6 4.4 159 903-1062 19-210 (252)
114 TIGR02252 DREG-2 REG-2-like, H 76.9 4.1 8.8E-05 42.1 5.2 82 957-1044 104-187 (203)
115 PRK10513 sugar phosphate phosp 76.4 4.9 0.00011 43.5 5.9 57 904-997 3-60 (270)
116 TIGR01484 HAD-SF-IIB HAD-super 76.3 4 8.7E-05 42.3 5.0 37 959-995 18-55 (204)
117 PRK10530 pyridoxal phosphate ( 76.3 7.2 0.00016 42.0 7.0 57 904-997 3-60 (272)
118 PRK13478 phosphonoacetaldehyde 75.8 4.8 0.0001 44.0 5.6 95 957-1055 100-197 (267)
119 PRK05601 DNA polymerase III su 74.6 6 0.00013 47.0 6.3 74 1127-1205 294-369 (377)
120 PRK13582 thrH phosphoserine ph 74.5 3.8 8.3E-05 42.3 4.3 49 956-1005 66-114 (205)
121 TIGR02137 HSK-PSP phosphoserin 74.4 4.4 9.5E-05 43.5 4.8 50 957-1007 67-116 (203)
122 PRK01158 phosphoglycolate phos 73.9 8.1 0.00018 40.6 6.5 57 905-998 4-61 (230)
123 PTZ00174 phosphomannomutase; P 73.5 3 6.5E-05 45.4 3.3 23 903-927 4-26 (247)
124 PRK09552 mtnX 2-hydroxy-3-keto 73.4 4.4 9.5E-05 43.0 4.5 38 957-994 73-111 (219)
125 TIGR02247 HAD-1A3-hyp Epoxide 73.1 2.1 4.6E-05 44.5 2.0 87 956-1047 92-182 (211)
126 PLN02940 riboflavin kinase 72.9 3.1 6.7E-05 48.6 3.5 86 957-1047 92-180 (382)
127 TIGR01486 HAD-SF-IIB-MPGP mann 72.8 7 0.00015 42.4 5.9 34 963-996 21-55 (256)
128 TIGR03351 PhnX-like phosphonat 72.3 5.8 0.00013 41.5 5.0 85 957-1045 86-174 (220)
129 KOG0966 ATP-dependent DNA liga 71.3 8.9 0.00019 49.0 6.9 63 1153-1215 807-881 (881)
130 COG0637 Predicted phosphatase/ 70.8 3.7 8E-05 44.2 3.2 85 957-1046 85-171 (221)
131 PRK15126 thiamin pyrimidine py 69.8 10 0.00022 41.4 6.4 38 1149-1186 191-239 (272)
132 PRK13225 phosphoglycolate phos 69.7 6.3 0.00014 44.2 4.8 81 957-1045 141-223 (273)
133 PRK10444 UMP phosphatase; Prov 69.5 7.8 0.00017 42.9 5.4 14 906-919 3-16 (248)
134 TIGR01482 SPP-subfamily Sucros 69.2 9.6 0.00021 39.9 5.8 32 964-995 21-53 (225)
135 PLN02645 phosphoglycolate phos 69.0 6.8 0.00015 44.4 5.0 55 903-995 27-82 (311)
136 TIGR01691 enolase-ppase 2,3-di 68.8 6.5 0.00014 43.0 4.6 86 956-1047 93-182 (220)
137 PRK06698 bifunctional 5'-methy 68.0 7.4 0.00016 46.3 5.2 84 957-1047 329-413 (459)
138 KOG3109 Haloacid dehalogenase- 67.9 6.9 0.00015 43.8 4.5 84 957-1047 99-191 (244)
139 TIGR01458 HAD-SF-IIA-hyp3 HAD- 67.4 7.6 0.00017 42.8 4.8 47 905-985 2-49 (257)
140 PHA02597 30.2 hypothetical pro 67.1 5.4 0.00012 41.2 3.5 95 956-1058 72-171 (197)
141 PLN02954 phosphoserine phospha 66.8 11 0.00024 39.6 5.7 50 957-1006 83-134 (224)
142 COG0241 HisB Histidinol phosph 66.6 23 0.0005 38.4 8.0 108 904-1044 5-132 (181)
143 smart00775 LNS2 LNS2 domain. T 65.2 12 0.00025 38.9 5.4 30 959-988 28-58 (157)
144 PRK10187 trehalose-6-phosphate 64.2 9.5 0.00021 42.4 4.9 60 903-994 13-74 (266)
145 PRK10976 putative hydrolase; P 64.2 14 0.00031 39.9 6.1 15 905-919 3-17 (266)
146 PRK09484 3-deoxy-D-manno-octul 63.0 28 0.0006 36.6 7.7 60 972-1045 63-123 (183)
147 TIGR01990 bPGM beta-phosphoglu 62.8 8.2 0.00018 38.9 3.7 82 957-1045 86-169 (185)
148 PLN03017 trehalose-phosphatase 62.6 12 0.00026 44.3 5.5 63 897-991 104-166 (366)
149 PF09419 PGP_phosphatase: Mito 61.7 13 0.00027 39.8 5.0 61 899-995 36-106 (168)
150 TIGR01452 PGP_euk phosphoglyco 61.7 13 0.00029 41.1 5.5 23 961-983 21-44 (279)
151 TIGR01493 HAD-SF-IA-v2 Haloaci 61.2 2.7 5.9E-05 42.2 0.0 77 957-1044 89-166 (175)
152 TIGR01680 Veg_Stor_Prot vegeta 60.5 32 0.0007 39.5 8.2 50 960-1009 147-197 (275)
153 TIGR01485 SPP_plant-cyano sucr 57.7 16 0.00035 39.6 5.1 15 904-918 1-15 (249)
154 PLN02919 haloacid dehalogenase 56.6 14 0.00031 48.9 5.2 85 959-1047 162-248 (1057)
155 TIGR01490 HAD-SF-IB-hyp1 HAD-s 56.4 17 0.00036 37.6 4.7 49 957-1006 86-135 (202)
156 TIGR01457 HAD-SF-IIA-hyp2 HAD- 55.9 19 0.00042 39.5 5.4 14 906-919 3-16 (249)
157 PLN02811 hydrolase 55.6 12 0.00026 39.7 3.6 86 957-1047 77-170 (220)
158 COG3882 FkbH Predicted enzyme 55.4 6.4 0.00014 48.1 1.7 116 899-1048 217-341 (574)
159 TIGR00685 T6PP trehalose-phosp 54.8 8.6 0.00019 41.8 2.5 62 903-997 2-63 (244)
160 COG0647 NagD Predicted sugar p 53.8 18 0.00039 41.2 4.9 55 902-994 6-61 (269)
161 PRK11133 serB phosphoserine ph 52.2 16 0.00035 42.2 4.3 88 957-1045 180-275 (322)
162 PF03767 Acid_phosphat_B: HAD 51.8 13 0.00028 40.9 3.2 78 901-998 69-156 (229)
163 PLN02423 phosphomannomutase 51.3 27 0.00058 38.4 5.6 17 903-919 6-22 (245)
164 PLN02887 hydrolase family prot 50.3 27 0.00059 43.7 6.0 60 900-996 304-364 (580)
165 PLN02151 trehalose-phosphatase 50.2 28 0.00061 41.2 5.8 62 899-992 93-154 (354)
166 COG4359 Uncharacterized conser 50.0 31 0.00066 38.2 5.5 39 957-995 72-111 (220)
167 PRK12702 mannosyl-3-phosphogly 48.8 36 0.00078 39.7 6.2 35 963-997 23-58 (302)
168 TIGR01460 HAD-SF-IIA Haloacid 48.3 21 0.00045 38.9 4.1 32 961-992 17-53 (236)
169 PRK14502 bifunctional mannosyl 48.1 35 0.00075 43.7 6.4 59 902-997 414-473 (694)
170 PLN03243 haloacid dehalogenase 45.7 16 0.00035 40.6 2.9 23 896-919 17-39 (260)
171 KOG3548 DNA damage checkpoint 44.9 22 0.00048 46.4 4.1 98 1113-1210 1045-1159(1176)
172 PLN02580 trehalose-phosphatase 44.6 36 0.00078 40.7 5.6 63 898-992 113-175 (384)
173 TIGR01548 HAD-SF-IA-hyp1 haloa 43.3 13 0.00028 38.6 1.6 14 906-919 2-15 (197)
174 PRK10725 fructose-1-P/6-phosph 42.9 14 0.0003 37.7 1.6 43 1145-1195 142-184 (188)
175 COG0560 SerB Phosphoserine pho 42.8 43 0.00094 36.5 5.5 50 956-1006 75-125 (212)
176 PF06941 NT5C: 5' nucleotidase 42.6 13 0.00027 39.0 1.4 79 957-1055 72-156 (191)
177 PHA02597 30.2 hypothetical pro 42.1 15 0.00032 38.1 1.7 43 1149-1201 134-178 (197)
178 PRK11587 putative phosphatase; 41.2 14 0.0003 39.1 1.5 16 904-919 3-18 (218)
179 COG0546 Gph Predicted phosphat 40.5 59 0.0013 34.9 6.0 83 957-1047 88-175 (220)
180 PRK11590 hypothetical protein; 40.1 16 0.00036 38.8 1.8 39 957-995 94-134 (211)
181 COG1105 FruK Fructose-1-phosph 39.0 59 0.0013 38.0 6.1 56 1112-1167 112-167 (310)
182 TIGR02253 CTE7 HAD superfamily 39.0 16 0.00036 38.0 1.6 15 905-919 3-17 (221)
183 TIGR02244 HAD-IG-Ncltidse HAD 39.0 43 0.00094 39.5 5.0 42 954-995 180-223 (343)
184 TIGR01993 Pyr-5-nucltdase pyri 38.2 16 0.00035 37.4 1.3 14 906-919 2-15 (184)
185 TIGR03351 PhnX-like phosphonat 38.2 19 0.00041 37.8 1.8 15 905-919 2-16 (220)
186 PRK13288 pyrophosphatase PpaX; 38.2 17 0.00038 38.0 1.6 16 904-919 3-18 (214)
187 COG1877 OtsB Trehalose-6-phosp 37.0 83 0.0018 36.0 6.7 64 897-992 11-76 (266)
188 PRK13223 phosphoglycolate phos 36.0 18 0.00039 40.2 1.4 16 904-919 13-28 (272)
189 PRK11590 hypothetical protein; 35.9 47 0.001 35.4 4.3 17 903-919 5-21 (211)
190 TIGR02252 DREG-2 REG-2-like, H 34.9 22 0.00049 36.7 1.8 14 906-919 2-15 (203)
191 PF13419 HAD_2: Haloacid dehal 33.9 20 0.00044 34.7 1.2 90 1094-1195 82-175 (176)
192 TIGR02009 PGMB-YQAB-SF beta-ph 33.7 20 0.00044 36.1 1.2 15 905-919 2-16 (185)
193 PRK13226 phosphoglycolate phos 33.4 20 0.00044 38.4 1.2 15 905-919 13-27 (229)
194 PF00702 Hydrolase: haloacid d 32.7 86 0.0019 32.1 5.5 42 956-997 125-167 (215)
195 TIGR01549 HAD-SF-IA-v1 haloaci 32.6 18 0.0004 35.6 0.7 14 906-919 1-14 (154)
196 PRK13478 phosphonoacetaldehyde 32.3 25 0.00055 38.5 1.7 15 905-919 5-19 (267)
197 TIGR01511 ATPase-IB1_Cu copper 31.8 84 0.0018 38.9 6.1 40 957-996 404-444 (562)
198 TIGR00338 serB phosphoserine p 31.3 26 0.00057 36.7 1.6 17 903-919 13-29 (219)
199 TIGR01545 YfhB_g-proteo haloac 31.1 63 0.0014 35.0 4.4 37 957-993 93-131 (210)
200 TIGR01509 HAD-SF-IA-v3 haloaci 31.1 24 0.00051 35.3 1.2 14 906-919 1-14 (183)
201 PF12710 HAD: haloacid dehalog 31.0 49 0.0011 33.5 3.4 47 959-1005 86-138 (192)
202 PLN02770 haloacid dehalogenase 30.7 24 0.00052 38.5 1.2 15 905-919 23-37 (248)
203 KOG3120 Predicted haloacid deh 30.7 78 0.0017 36.0 5.0 40 957-996 83-124 (256)
204 TIGR01990 bPGM beta-phosphoglu 30.5 23 0.0005 35.8 0.9 14 906-919 1-14 (185)
205 TIGR01422 phosphonatase phosph 30.3 31 0.00068 37.3 2.0 15 905-919 3-17 (253)
206 PLN02382 probable sucrose-phos 29.7 27 0.00059 41.6 1.5 21 898-918 3-23 (413)
207 TIGR01428 HAD_type_II 2-haloal 29.4 27 0.00058 36.1 1.3 14 906-919 3-16 (198)
208 COG0546 Gph Predicted phosphat 29.0 32 0.00068 36.9 1.7 17 903-919 3-19 (220)
209 TIGR02247 HAD-1A3-hyp Epoxide 28.9 34 0.00073 35.8 1.9 15 905-919 3-17 (211)
210 TIGR02254 YjjG/YfnB HAD superf 28.9 28 0.0006 36.2 1.3 93 1094-1199 102-200 (224)
211 TIGR01454 AHBA_synth_RP 3-amin 28.7 22 0.00048 37.0 0.5 13 907-919 1-13 (205)
212 PRK10826 2-deoxyglucose-6-phos 28.4 31 0.00068 36.5 1.6 17 903-919 6-22 (222)
213 TIGR01489 DKMTPPase-SF 2,3-dik 28.4 33 0.00071 34.6 1.6 16 904-919 1-16 (188)
214 PRK13225 phosphoglycolate phos 28.3 27 0.00058 39.3 1.1 17 903-919 61-77 (273)
215 COG3769 Predicted hydrolase (H 28.2 1.4E+02 0.003 34.3 6.3 30 971-1000 37-66 (274)
216 PRK10748 flavin mononucleotide 28.0 50 0.0011 35.7 3.1 83 957-1049 112-197 (238)
217 PRK10748 flavin mononucleotide 27.9 28 0.00062 37.6 1.2 15 905-919 11-25 (238)
218 PRK13222 phosphoglycolate phos 27.6 31 0.00066 36.0 1.3 16 904-919 6-21 (226)
219 PRK09449 dUMP phosphatase; Pro 27.1 29 0.00063 36.5 1.1 47 1145-1197 150-196 (224)
220 TIGR01491 HAD-SF-IB-PSPlk HAD- 27.1 35 0.00075 34.9 1.6 15 905-919 5-19 (201)
221 PRK14501 putative bifunctional 26.3 79 0.0017 40.2 4.7 61 901-993 489-551 (726)
222 PF13701 DDE_Tnp_1_4: Transpos 25.7 1.6E+02 0.0035 35.9 6.9 129 858-1001 99-244 (448)
223 TIGR01493 HAD-SF-IA-v2 Haloaci 25.6 32 0.0007 34.7 1.0 13 907-919 2-14 (175)
224 PF04147 Nop14: Nop14-like fam 25.3 37 0.0008 44.2 1.7 68 188-268 415-482 (840)
225 PRK14988 GMP/IMP nucleotidase; 24.8 39 0.00083 36.5 1.5 16 904-919 10-25 (224)
226 PLN02779 haloacid dehalogenase 24.0 46 0.00099 37.5 1.9 18 902-919 38-55 (286)
227 PF08235 LNS2: LNS2 (Lipin/Ned 21.8 1.5E+02 0.0032 31.8 5.0 38 958-995 27-65 (157)
228 PRK13582 thrH phosphoserine ph 21.7 49 0.0011 34.3 1.5 13 905-917 2-14 (205)
229 PRK10563 6-phosphogluconate ph 21.2 48 0.0011 34.9 1.3 16 904-919 4-19 (221)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=6.4e-48 Score=450.67 Aligned_cols=336 Identities=36% Similarity=0.536 Sum_probs=271.9
Q ss_pred ccccchhccCCchHHHHHHhHHHHHhhHHhhhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcce
Q 000938 867 WGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRH 946 (1218)
Q Consensus 867 ~~~f~~l~~G~~~~q~a~I~ke~akrL~~q~rLLs~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~ 946 (1218)
..-|.+++.+....+... ...+++..+..++..++|+||+|||+||+|+.....+.... .+.. ++......+..
T Consensus 112 ~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~e~~--~~l~-~~~~~~~sn~d 185 (635)
T KOG0323|consen 112 GRSFDYLVKGLQLSNEMV---AFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLSETE--KYLK-EEAESVESNKD 185 (635)
T ss_pred ccchhcccchhhhhhhhh---hhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhhhhh--hhcc-ccccccccccc
Confidence 444566666666555433 25677777888888889999999999999998644333221 1111 11110001233
Q ss_pred eeeec----cceEEEEecCCHHHHHHHHhccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCC
Q 000938 947 LFRFP----HMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVP 1022 (1218)
Q Consensus 947 lF~~~----~~~~YVKlRPGLdEFLeeLSk~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~ 1022 (1218)
+|+++ ...||||+||++.+||++++++|||||||+|++.||..|+++|||+|.||++|||+|++... .
T Consensus 186 l~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~~--------~ 257 (635)
T KOG0323|consen 186 LFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESPF--------F 257 (635)
T ss_pred ceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCCc--------c
Confidence 44443 24689999999999999999999999999999999999999999999999999999987432 4
Q ss_pred cccccccccCCC-CcEEEEeCCCCccccCcCCcccccccccccCcccccCC-----------------------------
Q 000938 1023 KSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGL----------------------------- 1072 (1218)
Q Consensus 1023 yiKDLsrVLGRD-srVVIVDDspdVW~~qpdN~I~IkPY~yF~~s~~q~Gl----------------------------- 1072 (1218)
..+||..++.+. ++||||||+.+||.+++.|+|.|.||.||.+..+.+..
T Consensus 258 kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~gd~nap~~~~~~~~~~~~~~~~~~k~~~~s~~~~~ 337 (635)
T KOG0323|consen 258 KTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQGDINAPPPLHVLRNVACSVRGAFFKEFDPSLKSRI 337 (635)
T ss_pred cccccccCCCCCCccEEEEeCccccccCCCcceEEeeeeecccCcccccCCcccccccchhcccccccccccCccccccc
Confidence 568888767776 99999999999999998899999999999987643321
Q ss_pred --------------------------------------------CCCCcccccccCCCcchhhHhHHHHHHHHHhhcccc
Q 000938 1073 --------------------------------------------LGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSH 1108 (1218)
Q Consensus 1073 --------------------------------------------pgPSl~Ei~~DEdpeD~eLlsLLpfLe~IHq~FFs~ 1108 (1218)
-..++.+...|+.+.|++|..++++|+.||..||..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~~ 417 (635)
T KOG0323|consen 338 SEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEENAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFAK 417 (635)
T ss_pred ccccccccccccCcccccccccccCcccccccccccccccchhhcccccccccccccccchhHHHHhhhhcccchhhhhc
Confidence 123444555677888999999999999999999997
Q ss_pred C-----CCCchhhHHHHHHHhhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHH
Q 000938 1109 Q-----SLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKV 1183 (1218)
Q Consensus 1109 ~-----~L~~~DVR~IL~eiRrqILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~gTeKV 1183 (1218)
. .+...|||.+|+++|.++|+||.++|||++|.+.+ ..+..+...+..+|+..+.+++.++||+|+.+.+|.|+
T Consensus 418 ~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~-~~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~ 496 (635)
T KOG0323|consen 418 YDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGST-DESADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKV 496 (635)
T ss_pred cccccccccCCChhhhhhhhhhHHhhccceeecccccCcCC-cchhhhhhhhhcccceecccccchhhhHHhhccCccee
Confidence 5 34679999999999999999999999999998753 23456666799999999999999999999999999999
Q ss_pred HHHHHcC-CcEEcHHHHHHHHHhcccCCCCCCCCC
Q 000938 1184 NWALSTG-RFVVHPGWVEASALLYRRANEQDFAIK 1217 (1218)
Q Consensus 1184 k~Alk~G-IkIVSPdWLedCl~~wkRVDEsdYlL~ 1217 (1218)
.+|...+ ++||++.||+.|+..|.++.|..|.+.
T Consensus 497 ~~a~~~~~~~Vv~~~wl~~~~e~w~~v~ek~~~l~ 531 (635)
T KOG0323|consen 497 YKAVVSGSAKVVNAAWLWRSLEKWGKVEEKLEPLD 531 (635)
T ss_pred eccccccceeEechhHHHHHHHHhcchhccccccc
Confidence 9998866 999999999999999999999999863
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=7.9e-34 Score=284.96 Aligned_cols=155 Identities=43% Similarity=0.704 Sum_probs=127.3
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhccceEEE
Q 000938 899 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHL 978 (1218)
Q Consensus 899 LLs~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~YEIVI 978 (1218)
|+.++|++||||||||||||+..+.... .+.+...+......+....|.+....+|+++|||+.+||+++++.||++|
T Consensus 1 ~~~~~kl~LVLDLDeTLihs~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I 78 (156)
T TIGR02250 1 LLREKKLHLVLDLDQTLIHTTKDPTLSE--WEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHV 78 (156)
T ss_pred CCcCCceEEEEeCCCCcccccccCccch--hhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEE
Confidence 5788999999999999999986442221 11110000011112334567766778999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEeCCCCccccCcCCcccc
Q 000938 979 YTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVV 1057 (1218)
Q Consensus 979 FTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-srVVIVDDspdVW~~qpdN~I~I 1057 (1218)
||++.+.||++|++.|||.+.+|++|+++|++|. | .++|||++++|++ ++||||||++.+|..||+|+|+|
T Consensus 79 ~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~----~----~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i 150 (156)
T TIGR02250 79 YTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESG----S----PHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQI 150 (156)
T ss_pred EeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCC----C----CccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEe
Confidence 9999999999999999999999999999998764 2 5789998899998 99999999999999999999999
Q ss_pred cccccc
Q 000938 1058 ERYTYF 1063 (1218)
Q Consensus 1058 kPY~yF 1063 (1218)
+||.||
T Consensus 151 ~~~~~f 156 (156)
T TIGR02250 151 EPYNYF 156 (156)
T ss_pred CCcccC
Confidence 999997
No 3
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=1.7e-33 Score=303.44 Aligned_cols=175 Identities=30% Similarity=0.392 Sum_probs=144.3
Q ss_pred hhhhcCCCeEEEEeCCCceeeccc-CCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhccce
Q 000938 897 KKMFSARKLCLVLDLDHTLLNSAK-FHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFE 975 (1218)
Q Consensus 897 ~rLLs~kKLTLVLDLDETLIHSs~-~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~YE 975 (1218)
.++...+|+||||||||||||++. ++...+ .+.... ..+....+.+||.+|||+++||+.++++||
T Consensus 82 ~~~~~~~kk~lVLDLDeTLvHss~~~~~~~~-~d~~~~------------v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e 148 (262)
T KOG1605|consen 82 LRLATVGRKTLVLDLDETLVHSSLNLKPIVN-ADFTVP------------VEIDGHIHQVYVRKRPHVDEFLSRVSKWYE 148 (262)
T ss_pred cccccCCCceEEEeCCCcccccccccCCCCC-cceeee------------eeeCCcceEEEEEcCCCHHHHHHHhHHHHH
Confidence 344578999999999999999984 221111 111111 111111357899999999999999999999
Q ss_pred EEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEeCCCCccccCcCCc
Q 000938 976 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNL 1054 (1218)
Q Consensus 976 IVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-srVVIVDDspdVW~~qpdN~ 1054 (1218)
++||||+.+.||++|+++|||.+++|.+|+| |++| .+.+| .|+|||. ++|++ ++||||||+|.+|.+||+|+
T Consensus 149 ~v~FTAs~~~Ya~~v~D~LD~~~~i~~~Rly-R~~C-~~~~g----~yvKdls-~~~~dL~~viIiDNsP~sy~~~p~Ng 221 (262)
T KOG1605|consen 149 LVLFTASLEVYADPLLDILDPDRKIISHRLY-RDSC-TLKDG----NYVKDLS-VLGRDLSKVIIVDNSPQSYRLQPENG 221 (262)
T ss_pred HHHHHhhhHHHHHHHHHHccCCCCeeeeeec-ccce-EeECC----cEEEEcc-eeccCcccEEEEcCChHHhccCccCC
Confidence 9999999999999999999998889999998 5545 46677 6999998 68888 89999999999999999999
Q ss_pred ccccccccccCcccccCCCCCCcccccccCCCcchhhHhHHHHHHHHHhhccccCCCCchhhHHHHHH
Q 000938 1055 IVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 1122 (1218)
Q Consensus 1055 I~IkPY~yF~~s~~q~GlpgPSl~Ei~~DEdpeD~eLlsLLpfLe~IHq~FFs~~~L~~~DVR~IL~e 1122 (1218)
|+|++|.. ++.|.+|++|+|||+.|.. ..|||.+|+.
T Consensus 222 IpI~sw~~----------------------d~~D~eLL~LlpfLe~L~~---------~~Dvr~~l~~ 258 (262)
T KOG1605|consen 222 IPIKSWFD----------------------DPTDTELLKLLPFLEALAF---------VDDVRPILAR 258 (262)
T ss_pred Cccccccc----------------------CCChHHHHHHHHHHHHhcc---------cccHHHHHHH
Confidence 99999962 6789999999999999974 5899999974
No 4
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.96 E-value=6e-30 Score=256.94 Aligned_cols=158 Identities=29% Similarity=0.336 Sum_probs=127.6
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhccceEEEEcCCc
Q 000938 904 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGN 983 (1218)
Q Consensus 904 KLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~YEIVIFTAGt 983 (1218)
|+|||||||||||||...+ .....+. +....++.....+||++|||+.+||++|+++|||+|||+++
T Consensus 1 k~~lvlDLDeTLi~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~ 67 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKM-PKVDADF------------KVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASL 67 (162)
T ss_pred CcEEEEcCCCCcCCCCCCC-CCCCCce------------EEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCc
Confidence 6899999999999997422 1000000 00001111235789999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEeCCCCccccCcCCccccccccc
Q 000938 984 KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTY 1062 (1218)
Q Consensus 984 reYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-srVVIVDDspdVW~~qpdN~I~IkPY~y 1062 (1218)
+.||++|++.|||.+.+|.++++ |++|.. ..| .+.|||+ .+|++ +++|||||++..|..++.|+|+|.+|.+
T Consensus 68 ~~yA~~il~~ldp~~~~f~~~l~-r~~~~~-~~~----~~~K~L~-~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~ 140 (162)
T TIGR02251 68 EEYADPVLDILDRGGKVISRRLY-RESCVF-TNG----KYVKDLS-LVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWFG 140 (162)
T ss_pred HHHHHHHHHHHCcCCCEEeEEEE-ccccEE-eCC----CEEeEch-hcCCChhhEEEEeCChhhhccCccCEeecCCCCC
Confidence 99999999999999889998777 565542 233 4899999 58998 9999999999999999999999999973
Q ss_pred ccCcccccCCCCCCcccccccCCCcchhhHhHHHHHHHHHh
Q 000938 1063 FPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHK 1103 (1218)
Q Consensus 1063 F~~s~~q~GlpgPSl~Ei~~DEdpeD~eLlsLLpfLe~IHq 1103 (1218)
+.+|.+|..|+++|+.|+.
T Consensus 141 ----------------------~~~D~~L~~l~~~L~~l~~ 159 (162)
T TIGR02251 141 ----------------------DPNDTELLNLIPFLEGLRF 159 (162)
T ss_pred ----------------------CCCHHHHHHHHHHHHHHhc
Confidence 4679999999999999985
No 5
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.96 E-value=2.1e-29 Score=247.70 Aligned_cols=157 Identities=39% Similarity=0.536 Sum_probs=113.5
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhccceEEEEcCCcH
Q 000938 905 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNK 984 (1218)
Q Consensus 905 LTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~YEIVIFTAGtr 984 (1218)
++|||||||||||+...... +. + ..... ...+++|++|||+++||++++++|||+|||++++
T Consensus 1 k~LVlDLD~TLv~~~~~~~~-~~-----------~-----~~~~~-~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~ 62 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPL-PY-----------D-----FKIID-QRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASE 62 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCT-T------------S-----EEEET-EEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-H
T ss_pred CEEEEeCCCcEEEEeecCCC-Cc-----------c-----cceec-cccceeEeeCchHHHHHHHHHHhceEEEEEeehh
Confidence 68999999999999853211 00 0 00001 2356899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEeCCCCccccCcCCcccccccccc
Q 000938 985 LYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYF 1063 (1218)
Q Consensus 985 eYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-srVVIVDDspdVW~~qpdN~I~IkPY~yF 1063 (1218)
.||.+|++.|||++.+|.++++ |++|. ...| .+.|||++ +|++ ++||||||++.+|..++.|+|+|++|..
T Consensus 63 ~ya~~v~~~ldp~~~~~~~~~~-r~~~~-~~~~----~~~KdL~~-l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~~- 134 (159)
T PF03031_consen 63 EYAEPVLDALDPNGKLFSRRLY-RDDCT-FDKG----SYIKDLSK-LGRDLDNVVIVDDSPRKWALQPDNGIPVPPFFG- 134 (159)
T ss_dssp HHHHHHHHHHTTTTSSEEEEEE-GGGSE-EETT----EEE--GGG-SSS-GGGEEEEES-GGGGTTSGGGEEE----SS-
T ss_pred hhhhHHHHhhhhhccccccccc-ccccc-cccc----ccccchHH-HhhccccEEEEeCCHHHeeccCCceEEeccccC-
Confidence 9999999999999889987665 66564 2222 45799995 6887 9999999999999999999999999862
Q ss_pred cCcccccCCCCCCcccccccCC-CcchhhHhHHHHHHHHHhhccccCCCCchhhH
Q 000938 1064 PCSRRQFGLLGPSLLEIDHDER-SEDGTLASSLGVIERLHKIFFSHQSLDDVDVR 1117 (1218)
Q Consensus 1064 ~~s~~q~GlpgPSl~Ei~~DEd-peD~eLlsLLpfLe~IHq~FFs~~~L~~~DVR 1117 (1218)
+ +.|.+|..|+++|+.|++ ..|||
T Consensus 135 ---------------------~~~~D~~L~~l~~~L~~l~~---------~~Dvr 159 (159)
T PF03031_consen 135 ---------------------DTPNDRELLRLLPFLEELAK---------EDDVR 159 (159)
T ss_dssp ---------------------CHTT--HHHHHHHHHHHHHT---------HS-CH
T ss_pred ---------------------CCcchhHHHHHHHHHHHhCc---------ccCCC
Confidence 3 679999999999999985 57887
No 6
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.94 E-value=3.7e-27 Score=245.49 Aligned_cols=162 Identities=17% Similarity=0.159 Sum_probs=127.0
Q ss_pred hcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhccceEEEE
Q 000938 900 FSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLY 979 (1218)
Q Consensus 900 Ls~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~YEIVIF 979 (1218)
...+|++|||||||||||+.. +. ..+|+.+||||++||+.|+++|||+||
T Consensus 17 ~~~~kklLVLDLDeTLvh~~~-----~~-------------------------~~~~~~kRP~l~eFL~~~~~~feIvVw 66 (195)
T TIGR02245 17 PREGKKLLVLDIDYTLFDHRS-----PA-------------------------ETGEELMRPYLHEFLTSAYEDYDIVIW 66 (195)
T ss_pred CCCCCcEEEEeCCCceEcccc-----cC-------------------------CCceEEeCCCHHHHHHHHHhCCEEEEE
Confidence 357889999999999999742 10 124789999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHcCCC-ceeeeeeeecCCCCCC-----CCCCCCCCccccccccc---CC--C-CcEEEEeCCCCcc
Q 000938 980 TMGNKLYATEMAKVLDPKG-VLFAGRVISRGDDGDP-----FDGDERVPKSKDLEGVL---GM--E-SAVVIIDDSVRVW 1047 (1218)
Q Consensus 980 TAGtreYAd~VLdiLDP~g-~LF~~RIySRDdc~~~-----~dG~Er~~yiKDLsrVL---GR--D-srVVIVDDspdVW 1047 (1218)
||+++.||+.+++.|++.+ ..+..+++ .+.|+.. ..| ..++|||+.+. |+ + +++|||||+|.++
T Consensus 67 TAa~~~ya~~~l~~l~~~~~~~~~i~~~-ld~~~~~~~~~~~~g---~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~ 142 (195)
T TIGR02245 67 SATSMKWIEIKMTELGVLTNPNYKITFL-LDSTAMITVHTPRRG---KFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNF 142 (195)
T ss_pred ecCCHHHHHHHHHHhcccCCccceEEEE-eccccceeeEeeccC---cEEEeecHHhhhhcccCCCcccEEEEeCCHHHH
Confidence 9999999999999997643 22333444 4555311 122 13589999653 33 4 7999999999999
Q ss_pred ccCcCCcccccccccccCcccccCCCCCCcccccccCCCcchhhHhHHHHHHHHHhhccccCCCCchhhHHHHHH
Q 000938 1048 PHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 1122 (1218)
Q Consensus 1048 ~~qpdN~I~IkPY~yF~~s~~q~GlpgPSl~Ei~~DEdpeD~eLlsLLpfLe~IHq~FFs~~~L~~~DVR~IL~e 1122 (1218)
..||.|+|+|++|.+- +..++.|.+|..|+++|+.|+. .+|||.++..
T Consensus 143 ~~~P~N~i~I~~f~~~------------------~~~~~~D~eL~~L~~yL~~la~---------~~Dvr~~~~~ 190 (195)
T TIGR02245 143 LMNPQNGLKIRPFKKA------------------HANRGTDQELLKLTQYLKTIAE---------LEDFSSLDHK 190 (195)
T ss_pred hcCCCCccccCCcccc------------------CCCCcccHHHHHHHHHHHHHhc---------Ccccchhhhc
Confidence 9999999999999631 1125789999999999999995 7899999863
No 7
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.89 E-value=3.5e-23 Score=229.57 Aligned_cols=160 Identities=24% Similarity=0.401 Sum_probs=142.1
Q ss_pred hcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhccceEEEE
Q 000938 900 FSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLY 979 (1218)
Q Consensus 900 Ls~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~YEIVIF 979 (1218)
..+.++||||||.++|||..|. + ..+|.+++|||++.||..++++||||||
T Consensus 185 y~Qp~yTLVleledvLVhpdws--------------------------~---~tGwRf~kRPgvD~FL~~~a~~yEIVi~ 235 (393)
T KOG2832|consen 185 YEQPPYTLVLELEDVLVHPDWS--------------------------Y---KTGWRFKKRPGVDYFLGHLAKYYEIVVY 235 (393)
T ss_pred ccCCCceEEEEeeeeEeccchh--------------------------h---hcCceeccCchHHHHHHhhcccceEEEE
Confidence 3578999999999999999651 0 0357899999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEeCCCCccccCcCCccccc
Q 000938 980 TMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVE 1058 (1218)
Q Consensus 980 TAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-srVVIVDDspdVW~~qpdN~I~Ik 1058 (1218)
|.....||.+|++.|||+| ++++|+|+ + |+.+++| +++|||+ -|+|| .+||+||-.+..+..||+|.|.++
T Consensus 236 sse~gmt~~pl~d~lDP~g-~IsYkLfr-~-~t~y~~G----~HvKdls-~LNRdl~kVivVd~d~~~~~l~P~N~l~l~ 307 (393)
T KOG2832|consen 236 SSEQGMTVFPLLDALDPKG-YISYKLFR-G-ATKYEEG----HHVKDLS-KLNRDLQKVIVVDFDANSYKLQPENMLPLE 307 (393)
T ss_pred ecCCccchhhhHhhcCCcc-eEEEEEec-C-cccccCc----cchhhhh-hhccccceeEEEEccccccccCcccccccC
Confidence 9999999999999999997 78899994 4 5677787 7899999 58999 999999999999999999999999
Q ss_pred ccccccCcccccCCCCCCcccccccCCCcchhhHhHHHHHHHHHhhccccCCCCchhhHHHHHHHhh
Q 000938 1059 RYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQR 1125 (1218)
Q Consensus 1059 PY~yF~~s~~q~GlpgPSl~Ei~~DEdpeD~eLlsLLpfLe~IHq~FFs~~~L~~~DVR~IL~eiRr 1125 (1218)
||.. +++|+.|.+|++||+.||+ -+.+|||++|..+..
T Consensus 308 ~W~G----------------------n~dDt~L~dL~~FL~~ia~-------~~~eDvR~vL~~y~~ 345 (393)
T KOG2832|consen 308 PWSG----------------------NDDDTSLFDLLAFLEYIAQ-------QQVEDVRPVLQSYSQ 345 (393)
T ss_pred cCCC----------------------CcccchhhhHHHHHHHHHH-------ccHHHHHHHHHHhcc
Confidence 9972 5778999999999999997 357999999987765
No 8
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.83 E-value=2.1e-20 Score=184.60 Aligned_cols=144 Identities=38% Similarity=0.508 Sum_probs=111.6
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhccceEEEEcCC
Q 000938 903 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMG 982 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~YEIVIFTAG 982 (1218)
||++|||||||||||+...+.. + +. ....+-...+......+++++|||+.+||++|.+.|+|+|||++
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~-~----~~------~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~ 69 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFK-E----WT------NRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAG 69 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCC-C----CC------ccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCC
Confidence 6899999999999999631110 1 10 00111112222334578899999999999999999999999999
Q ss_pred cHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEeCCCCccccCcCCcccccccc
Q 000938 983 NKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYT 1061 (1218)
Q Consensus 983 treYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-srVVIVDDspdVW~~qpdN~I~IkPY~ 1061 (1218)
.+.||+.+++.|++.+.+| .+++++++|.. .++ .+.|+|+ .+|++ +.+|+|||++..|..++.|+|.|+||.
T Consensus 70 ~~~~~~~il~~l~~~~~~f-~~i~~~~d~~~-~KP----~~~k~l~-~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~ 142 (148)
T smart00577 70 LRMYADPVLDLLDPKKYFG-YRRLFRDECVF-VKG----KYVKDLS-LLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWF 142 (148)
T ss_pred cHHHHHHHHHHhCcCCCEe-eeEEECccccc-cCC----eEeecHH-HcCCChhcEEEEECCHHHhhcCccCEEEecCcC
Confidence 9999999999999976445 46888876642 222 3889998 57887 999999999999999999999999998
Q ss_pred ccc
Q 000938 1062 YFP 1064 (1218)
Q Consensus 1062 yF~ 1064 (1218)
++.
T Consensus 143 ~~~ 145 (148)
T smart00577 143 GDP 145 (148)
T ss_pred CCC
Confidence 754
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.80 E-value=6e-20 Score=207.59 Aligned_cols=180 Identities=28% Similarity=0.350 Sum_probs=143.8
Q ss_pred hhHHhhhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHh
Q 000938 892 RLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS 971 (1218)
Q Consensus 892 rL~~q~rLLs~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLS 971 (1218)
.+..+..--...+.||++|||+||+|+.... ....+++... ........+||.+||+|++||..++
T Consensus 200 ~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~---~~~~df~~~~-----------e~~~~~~~~~v~kRp~l~~fl~~ls 265 (390)
T COG5190 200 TLEPPVSKSTSPKKTLVLDLDETLVHSSFRY---ITLLDFLVKV-----------EISLLQHLVYVSKRPELDYFLGKLS 265 (390)
T ss_pred cccchhhcCCCCccccccCCCccceeecccc---ccccchhhcc-----------ccccceeEEEEcCChHHHHHHhhhh
Confidence 3444444446789999999999999998532 1111111110 1111125789999999999999999
Q ss_pred ccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEeCCCCccccC
Q 000938 972 KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHN 1050 (1218)
Q Consensus 972 k~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-srVVIVDDspdVW~~q 1050 (1218)
++|++++||++.+.||++|+++||+.+ .|++|+|++ .| ....| .|+|||. .++++ ..+||||++|..|..+
T Consensus 266 ~~~~l~~ft~s~~~y~~~v~d~l~~~k-~~~~~lfr~-sc-~~~~G----~~ikDis-~i~r~l~~viiId~~p~SY~~~ 337 (390)
T COG5190 266 KIHELVYFTASVKRYADPVLDILDSDK-VFSHRLFRE-SC-VSYLG----VYIKDIS-KIGRSLDKVIIIDNSPASYEFH 337 (390)
T ss_pred hhEEEEEEecchhhhcchHHHhccccc-eeehhhhcc-cc-eeccC----chhhhHH-hhccCCCceEEeeCChhhhhhC
Confidence 999999999999999999999999998 899999965 34 45667 5999999 57888 9999999999999999
Q ss_pred cCCcccccccccccCcccccCCCCCCcccccccCCCcchhhHhHHHHHHHHHhhccccCCCCchhhHHHHHH
Q 000938 1051 KLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 1122 (1218)
Q Consensus 1051 pdN~I~IkPY~yF~~s~~q~GlpgPSl~Ei~~DEdpeD~eLlsLLpfLe~IHq~FFs~~~L~~~DVR~IL~e 1122 (1218)
|.|+|+|.+|.. ++.|..|.++++||+.|.. -+..||+.+|..
T Consensus 338 p~~~i~i~~W~~----------------------d~~d~el~~ll~~le~L~~-------~~~~d~~~~l~~ 380 (390)
T COG5190 338 PENAIPIEKWIS----------------------DEHDDELLNLLPFLEDLPD-------RDLKDVSSILQS 380 (390)
T ss_pred ccceeccCcccc----------------------cccchhhhhhccccccccc-------ccchhhhhhhhh
Confidence 999999999972 4678999999999999974 247899998863
No 10
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.55 E-value=7.7e-15 Score=166.58 Aligned_cols=274 Identities=25% Similarity=0.404 Sum_probs=187.8
Q ss_pred hhhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhccce
Q 000938 896 QKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFE 975 (1218)
Q Consensus 896 q~rLLs~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~YE 975 (1218)
+..+...+++.||+|||.|.+|+.... .+|.... .. -+..........+......+++++||++..|+...++.||
T Consensus 18 ~~~l~q~~~~~l~~~~~~~~~h~~~~~-~~p~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e 93 (390)
T COG5190 18 MEALRQDKKLILVVDLDQTIIHTTVDP-NDPNNVN-QS--LERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYE 93 (390)
T ss_pred HHHhhcCcccccccccccceecccccC-CCCCchh-hh--hhccccchhccccccccccceeeecccccchhhhhchhcc
Confidence 345567899999999999999998532 2332110 00 0000000001111122356899999999999999999999
Q ss_pred EEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEeCCCCcc---ccCc
Q 000938 976 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVW---PHNK 1051 (1218)
Q Consensus 976 IVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-srVVIVDDspdVW---~~qp 1051 (1218)
+++||+|++.||..+++++||.|.+|..|+..++.... ...|-+++++..+ ..++|+||++++| ..+
T Consensus 94 ~~~~~~~~~~~~~~~~~i~d~~g~~~~d~~~~~~~~~~--------~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~~- 164 (390)
T COG5190 94 LHIYTMGTRAYAERIAKIIDPTGKLFNDRILSRDESGS--------LSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDMN- 164 (390)
T ss_pred eeeEeeccccchhhhhhccccccccccccccccccccc--------chhhhhhhcCccccccccccccccccCCccchh-
Confidence 99999999999999999999999999999998875432 4568899888888 8999999999999 443
Q ss_pred CCcccccccccccCccc----------ccCCCC-----C----------------------Cccc--------ccccCC-
Q 000938 1052 LNLIVVERYTYFPCSRR----------QFGLLG-----P----------------------SLLE--------IDHDER- 1085 (1218)
Q Consensus 1052 dN~I~IkPY~yF~~s~~----------q~Glpg-----P----------------------Sl~E--------i~~DEd- 1085 (1218)
.|.+...++..+..... .....+ + |++. ...+..
T Consensus 165 ~~~v~~~~~~~~~~~~~i~d~~~~~~~~~r~~~~~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~ 244 (390)
T COG5190 165 SNFVAKSPFSKYESDKDIVDLPRLERKLSREAGIDTLEPPVSKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISL 244 (390)
T ss_pred hhhhcccccccccccccccCcccccchhhhhcccccccchhhcCCCCccccccCCCccceeeccccccccchhhcccccc
Confidence 68888888543332210 111001 0 0000 001111
Q ss_pred -------CcchhhHhHHHHHHHHHhhccccCC--CCchhhHHHHHHHhhhhccCceeeeeccccCCCCCCCCchHHHHHH
Q 000938 1086 -------SEDGTLASSLGVIERLHKIFFSHQS--LDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAE 1156 (1218)
Q Consensus 1086 -------peD~eLlsLLpfLe~IHq~FFs~~~--L~~~DVR~IL~eiRrqILkGCvIvFSGIfP~g~~nPer~~LwkLAe 1156 (1218)
..|.+|..++..|.++|.-+|-... .-...|..+|...+ +|.+|.+-++++++.|. ....|.
T Consensus 245 ~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k--~~~~~lfr~sc~~~~G~---~ikDis---- 315 (390)
T COG5190 245 LQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVLDILDSDK--VFSHRLFRESCVSYLGV---YIKDIS---- 315 (390)
T ss_pred ceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHHHhccccc--eeehhhhcccceeccCc---hhhhHH----
Confidence 2467889999999999987776432 22455999998877 99999999999987652 111222
Q ss_pred HhCCEEecccCCCccEEEeCCCCCHHHHHHHHcCCcEEcHHHHHH
Q 000938 1157 QFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEA 1201 (1218)
Q Consensus 1157 qLGAtVssdVd~kVTHLVAss~gTeKVk~Alk~GIkIVSPdWLed 1201 (1218)
..| ..-.-||+|+.++.+- +....+.|+.+.|+.+
T Consensus 316 ~i~------r~l~~viiId~~p~SY----~~~p~~~i~i~~W~~d 350 (390)
T COG5190 316 KIG------RSLDKVIIIDNSPASY----EFHPENAIPIEKWISD 350 (390)
T ss_pred hhc------cCCCceEEeeCChhhh----hhCccceeccCccccc
Confidence 222 3336699999887655 5566789999999998
No 11
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.37 E-value=8.2e-13 Score=113.68 Aligned_cols=63 Identities=27% Similarity=0.330 Sum_probs=54.0
Q ss_pred ceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHHcCCcEEcHHH
Q 000938 1131 CRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGW 1198 (1218)
Q Consensus 1131 CvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~gTeKVk~Alk~GIkIVSPdW 1198 (1218)
|+|||||+.+. ++..++++++.+||.|..+++.+||||||....+.||++|+++||+||+++|
T Consensus 1 ~~i~~sg~~~~-----~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGK-----ERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TT-----TCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHH-----HHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 68999998654 4789999999999999999999999999999999999999999999999999
No 12
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.32 E-value=2.8e-12 Score=111.19 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=67.1
Q ss_pred hhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCC--CCHHHHHHHHcCCcEEcHHHHHH
Q 000938 1124 QRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSL--GTDKVNWALSTGRFVVHPGWVEA 1201 (1218)
Q Consensus 1124 RrqILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~--gTeKVk~Alk~GIkIVSPdWLed 1201 (1218)
+.++|+||.|+|+++ + ...+..+.++++.+||++...+++.|||||+... .+.|+..|...|++||+++||++
T Consensus 2 ~~~~F~g~~f~i~~~-~----~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ 76 (78)
T PF00533_consen 2 KPKIFEGCTFCISGF-D----SDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIED 76 (78)
T ss_dssp STTTTTTEEEEESST-S----SSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHH
T ss_pred CCCCCCCEEEEEccC-C----CCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHH
Confidence 467999999999554 2 2356789999999999999999999999999987 89999999999999999999999
Q ss_pred HH
Q 000938 1202 SA 1203 (1218)
Q Consensus 1202 Cl 1203 (1218)
|+
T Consensus 77 ci 78 (78)
T PF00533_consen 77 CI 78 (78)
T ss_dssp HH
T ss_pred hC
Confidence 96
No 13
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=99.27 E-value=2.7e-12 Score=143.31 Aligned_cols=88 Identities=20% Similarity=0.272 Sum_probs=84.2
Q ss_pred hhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHHcCCcEEcHHHHHHHHH
Q 000938 1125 RKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASAL 1204 (1218)
Q Consensus 1125 rqILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~gTeKVk~Alk~GIkIVSPdWLedCl~ 1204 (1218)
.++|+|+++++||| .||++..|...|..|||+|..|++..+|||||+.++|.||++.+-.|-.||+-+||.+|..
T Consensus 315 ~klL~GVV~VlSGf-----qNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~~Cy~ 389 (508)
T KOG3226|consen 315 SKLLEGVVFVLSGF-----QNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEGNGGTIVSKEWITECYA 389 (508)
T ss_pred HHhhhceEEEEecc-----cCchHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhcccCCceEeeHHHHHHHHH
Confidence 57899999999998 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCC
Q 000938 1205 LYRRANEQDFAIK 1217 (1218)
Q Consensus 1205 ~wkRVDEsdYlL~ 1217 (1218)
..++++-..|+|.
T Consensus 390 ~kk~lp~rrYlm~ 402 (508)
T KOG3226|consen 390 QKKLLPIRRYLMH 402 (508)
T ss_pred HHhhccHHHHHhc
Confidence 9999999999873
No 14
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.15 E-value=8.2e-11 Score=99.56 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=65.1
Q ss_pred hhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCC-CccEEEeCCCCCHH--HHHHHHcCCcEEcHHHHHHH
Q 000938 1126 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDD-QVTHVVANSLGTDK--VNWALSTGRFVVHPGWVEAS 1202 (1218)
Q Consensus 1126 qILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~-kVTHLVAss~gTeK--Vk~Alk~GIkIVSPdWLedC 1202 (1218)
.+|+||+|+|+|-+ ..+.+..+++++..+||++...+++ .+||+|+......+ +..|...+++||+++||.+|
T Consensus 1 ~~f~g~~~~~~g~~----~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~ 76 (80)
T smart00292 1 KLFKGKVFVITGKF----DKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDC 76 (80)
T ss_pred CccCCeEEEEeCCC----CCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHH
Confidence 47999999999922 2345678999999999999999999 99999999866554 57778899999999999999
Q ss_pred HHhc
Q 000938 1203 ALLY 1206 (1218)
Q Consensus 1203 l~~w 1206 (1218)
+..+
T Consensus 77 ~~~~ 80 (80)
T smart00292 77 LKAG 80 (80)
T ss_pred HHCc
Confidence 8754
No 15
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.12 E-value=1.8e-10 Score=95.41 Aligned_cols=71 Identities=24% Similarity=0.343 Sum_probs=62.6
Q ss_pred CceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHH-HHHHHHcCCcEEcHHHHHHHHH
Q 000938 1130 GCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDK-VNWALSTGRFVVHPGWVEASAL 1204 (1218)
Q Consensus 1130 GCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~gTeK-Vk~Alk~GIkIVSPdWLedCl~ 1204 (1218)
||.|+|+|..+. ..+..+.+++..+||++..+++..+||||+......+ +..|...|++||+++||.+|+.
T Consensus 1 ~~~~~i~g~~~~----~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPS----EERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCC----cCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHhC
Confidence 789999998642 3467899999999999999999999999999877665 8888899999999999999973
No 16
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.11 E-value=4.8e-12 Score=150.73 Aligned_cols=586 Identities=23% Similarity=0.198 Sum_probs=335.0
Q ss_pred cccccccccccccccccccc----------ccccchhh------hHhhhchh-hHHHHHHHHHhhh--hccchhHhhhhh
Q 000938 139 IEKEEGELEEGEIELDLESE----------SNEKVSEQ------VKEEMKLI-NVESIREALESVL--RGDISFEGVCSK 199 (1218)
Q Consensus 139 ~ekeegeleegeid~d~~~~----------~~~~~~~~------~~e~~~~~-~~~~i~~~le~v~--~~~~sf~~~c~~ 199 (1218)
..++.+.+.+|.++.-.++. +.+..... ...+++.. .|..+++++.+.+ +...-|.|.|..
T Consensus 23 ~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~v~~~~~~~~~~~~C~H~~v~~GlC~~ 102 (635)
T KOG0323|consen 23 DLAELTALASGASDGVLESSDDSLVEKDLESFVAICRSKVEGAVVLLGRDLEKKVALISGVSSSTSCCEHFTVFGGLCAS 102 (635)
T ss_pred chhhhhhhhhhccccccccccccchhhcccchhheecccccchhhccccchhhhhccccccccccCCccceeecccHHHH
Confidence 36888899999887643311 11111111 11235555 6677777777644 788899999999
Q ss_pred HHHHHHHHHHhhccCCCcchhHHHHHHHhhhhheeeeeeccChhhhhhhHHHHHHHHHhhhccCCCCCChhHHHHHHHHh
Q 000938 200 LEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAML 279 (1218)
Q Consensus 200 ~~~~~~~l~~~~~~~~~~~~d~l~~~~~~~~~~~~~v~~s~~~~~~~~nk~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 279 (1218)
.-..|+++..... .+-.....|.+..+..++++++.||+|++.. |.++..+...++...+...|..+.
T Consensus 103 Cg~~l~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------L~lv~Dld~tllh~~~~~~l~e~~ 170 (635)
T KOG0323|consen 103 CGKDLESLQGRSF-DYLVKGLQLSNEMVAFTKTLTTQFSSLNRKK-----------LHLVLDLDHTLLHTILKSDLSETE 170 (635)
T ss_pred HHHHHHHhhccch-hcccchhhhhhhhhhhhhHHHHHHHHHhhhc-----------ceeehhhhhHHHHhhccchhhhhh
Confidence 9888888665554 4447888999999999999999999998766 222222222222223333333222
Q ss_pred hhhhhcccchhhhhhhhccccCCCCCccccccccccccccCCCCCccccccCCCccCCCCCCCCccccccccccCCCCCc
Q 000938 280 SSLVTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKV 359 (1218)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~~~~~~plldlh~~ 359 (1218)
..+.... . .++...+.+.-++. .+++.-..|-|-.+.++|..|+
T Consensus 171 ~~l~~~~----------------------~----------~~~sn~dl~~~~~~---~~~~~~~vKlRP~~~efL~~~s- 214 (635)
T KOG0323|consen 171 KYLKEEA----------------------E----------SVESNKDLFRFNPL---GHDTEYLVKLRPFVHEFLKEAN- 214 (635)
T ss_pred hhccccc----------------------c----------cccccccceeeccc---CCCceEEEEeCccHHHHHHHHH-
Confidence 2221111 0 00223333333333 4446666688988999999888
Q ss_pred CCCCCCCCCCCCCCCCcccccccccccccccccccccccccCccccccCCCchhhhHHHhHHHhhhcCcccccCCCCCCC
Q 000938 360 HDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSP 439 (1218)
Q Consensus 360 ~d~~slpspt~~~~~~~pv~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~dalkavs~yqqk~~~~s~f~~~~~psp 439 (1218)
..++.++...++.-++...+. |..+..... +.++..++. +.+|.+.+|+.+
T Consensus 215 ---klfemhVyTmg~R~YA~~i~~----liDP~~~lF-------~dRIisrde---------------~~~~kt~dL~~~ 265 (635)
T KOG0323|consen 215 ---KLFEMHVYTMGTRDYALEIAK----LIDPEGKYF-------GDRIISRDE---------------SPFFKTLDLVLL 265 (635)
T ss_pred ---hhceeEEEeccchHHHHHHHH----HhCCCCccc-------cceEEEecC---------------CCcccccccccC
Confidence 677888888777777666655 544443311 133344333 889999999999
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhccccCCCCCCCCCCCCCCCCCc
Q 000938 440 TPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYNPVVKPNPV 519 (1218)
Q Consensus 440 tps~~~~~~~~d~~~evss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 519 (1218)
+|.|++-.=-+| .++-.-..... |.++..--|--+....+..+ +-..++.+-+....|+ -...
T Consensus 266 ~p~g~smvvIID----Dr~dVW~~~~~--nLI~i~~y~yF~~~gd~nap------~~~~~~~~~~~~~~~~-----~~k~ 328 (635)
T KOG0323|consen 266 FPCGDSMVVIID----DRSDVWPDHKR--NLIQIAPYPYFSGQGDINAP------PPLHVLRNVACSVRGA-----FFKE 328 (635)
T ss_pred CCCCCccEEEEe----CccccccCCCc--ceEEeeeeecccCcccccCC------cccccccchhcccccc-----cccc
Confidence 999987633333 33322211111 22221111111111110000 1111344444445554 5667
Q ss_pred ccCCCccCCcccccccCcccccCCCCCcCCCCCCCccccccccccccccccCCCCCCchhhhhhhccCCCCccccccccc
Q 000938 520 VKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNI 599 (1218)
Q Consensus 520 ~k~~~ksrdprlr~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~d~~~~kr~~~~~~~~~~~~~~~~~ 599 (1218)
.++|+++|++++|+.+.|.+.--.++ ++..|... .+++++.++.
T Consensus 329 ~~~s~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-p~~~~~~~~~-------------------------- 372 (635)
T KOG0323|consen 329 FDPSLKSRISEVRYEDDDESNPTSYS---------VELSANPG-PLKQDGMDEF-------------------------- 372 (635)
T ss_pred cCcccccccccccccccccccCcccc---------cccccccC-cccccccccc--------------------------
Confidence 79999999999999999863211111 12222111 2222222222
Q ss_pred cCCCCcccccCCCcccccccccccccccccccccCCCCCCCcccCCcccccCCCCCCCcccCccccchHHHhhhhccChH
Q 000938 600 YGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPT 679 (1218)
Q Consensus 600 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~iavnp~ 679 (1218)
+|..
T Consensus 373 -------------------------------------------------------------------~~~~--------- 376 (635)
T KOG0323|consen 373 -------------------------------------------------------------------VPEE--------- 376 (635)
T ss_pred -------------------------------------------------------------------cccc---------
Confidence 0000
Q ss_pred HHHHHHHhhhhhhhHHHhhhccCCCCCCcCCCCCCCCCCCCcCCccccccCCCcccccccccccc--CCCCCccccCCCC
Q 000938 680 MLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSIPPDELGKVRMKPRDPRRVLHGNALQRS--GSLGPEFKTDGPS 757 (1218)
Q Consensus 680 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~g~irmkprdprr~lh~~~~~~~--~~~~~~~~~~~~~ 757 (1218)
.++..++|+++||++|++|.-+.-.-+-. .-.....+.-..
T Consensus 377 ------------------------------------~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~~~~- 419 (635)
T KOG0323|consen 377 ------------------------------------NAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFAKYD- 419 (635)
T ss_pred ------------------------------------cchhhcccccccccccccccchhHHHHhhhhcccchhhhhccc-
Confidence 24467899999999999997543322211 111111111111
Q ss_pred CCCCCCCccchhhhccCCCCCCCcccccccCC----CcchhHhhhcccccccccccCccCCCCCCCCCCCCCCCCCCccc
Q 000938 758 APCTQGSKENLNFQKQLGAPEAKPVLSQSVLQ----PDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSG 833 (1218)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~~~~~~~t~~~~~i~d~~s~s~~~~~~~~~~~~~~~~~~~~~~~ 833 (1218)
...+.-+..|++..-.+..++.+-.--... |....+++ +|++-++|+.....++. ++...-+.+
T Consensus 420 --~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~~~------s~~~~~~~~~g~vs~~~----~~~~~th~i 487 (635)
T KOG0323|consen 420 --EVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTDES------ADILGVAQQLGAVSAPD----VSDKTTHLI 487 (635)
T ss_pred --cccccccCCChhhhhhhhhhHHhhccceeecccccCcCCcch------hhhhhhhhcccceeccc----ccchhhhHH
Confidence 112223334555544444433332222222 33333333 77877777665222211 111111111
Q ss_pred cccccccccCCCcCCCCCCCCCCC-CCCCCCCCcccccchhccCCchHHHHHHhHHHHHhhHHhhhhhcCCCeEEEEeCC
Q 000938 834 ADMKAVVTNHDDKQTGTGSGPEAG-PVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLD 912 (1218)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pq~~~~~f~~l~~G~~~~q~a~I~ke~akrL~~q~rLLs~kKLTLVLDLD 912 (1218)
..+++.......+.-.. +..+. ......+..|+...+.+.++.+.+++.+.++.-.+...+..+.. .++.++.++|
T Consensus 488 -~~~~gt~k~~~a~~~~~-~~Vv~~~wl~~~~e~w~~v~ek~~~l~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 564 (635)
T KOG0323|consen 488 -AANAGTKKVYKAVVSGS-AKVVNAAWLWRSLEKWGKVEEKLEPLDDDQRAAIRRESLARLYEQEKVFP-PKLSLVAPLD 564 (635)
T ss_pred -hhccCcceeeccccccc-eeEechhHHHHHHHHhcchhcccccccccccchhcccchhhhhhhhcccc-hhhhccCccc
Confidence 12333333333333222 44444 56677788899999999999999998888877777777777777 8999999999
Q ss_pred CceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhccceEEEEcCCcHHHHH
Q 000938 913 HTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYAT 988 (1218)
Q Consensus 913 ETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~YEIVIFTAGtreYAd 988 (1218)
++++-+..+..++-.+..++...++.+...++..+|+...++.+++.+ ++.....|+...||++.+.||.
T Consensus 565 ~~~~~~~~~n~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~s~~~~~~~ 634 (635)
T KOG0323|consen 565 NELQESGKENEVNSRTELLDETGEDVSSEPPDRHLERELPSSMWIKLL------LEKASKLYELHLYTSGNKHRAE 634 (635)
T ss_pred hhhhhccccchhcccchhhccccCcccCCCCCccchhhccccCccccc------hhhhhhHHHhccCCcccccccC
Confidence 999988765544544445555555555556667777777778888888 8888999999999999888764
No 17
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.45 E-value=2.4e-07 Score=114.36 Aligned_cols=87 Identities=20% Similarity=0.255 Sum_probs=77.5
Q ss_pred hhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCC-----CCHHHHHHHHcCCcEEcHHH
Q 000938 1124 QRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSL-----GTDKVNWALSTGRFVVHPGW 1198 (1218)
Q Consensus 1124 RrqILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~-----gTeKVk~Alk~GIkIVSPdW 1198 (1218)
..++|.|++|||+|.++. .+..+.++++.+||+|...| .++||+|++.. ++.|+++|++.||+||+.+|
T Consensus 186 ~~kpL~G~~fviTGtl~~-----sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~ 259 (815)
T PLN03122 186 PGKPFSGMMISLSGRLSR-----THQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAW 259 (815)
T ss_pred cCCCcCCcEEEEeCCCCC-----CHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHH
Confidence 456899999999998753 35688999999999999999 77889999862 35899999999999999999
Q ss_pred HHHHHHhcccCCCCCCCC
Q 000938 1199 VEASALLYRRANEQDFAI 1216 (1218)
Q Consensus 1199 LedCl~~wkRVDEsdYlL 1216 (1218)
|.+|+...+.+++..|.+
T Consensus 260 L~d~i~~~k~~~~~~y~l 277 (815)
T PLN03122 260 LIDSIEKQEAQPLEAYDV 277 (815)
T ss_pred HHHHHhcCCcccchhhhh
Confidence 999999999999999987
No 18
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=98.37 E-value=4.3e-07 Score=114.03 Aligned_cols=89 Identities=8% Similarity=0.072 Sum_probs=78.3
Q ss_pred HhhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCC---CCCHHHHHHHHcCCcEEcHHHH
Q 000938 1123 EQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS---LGTDKVNWALSTGRFVVHPGWV 1199 (1218)
Q Consensus 1123 iRrqILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss---~gTeKVk~Alk~GIkIVSPdWL 1199 (1218)
...++|.|++|+++|.|+. ...++.++++.+||++...++..|||||++. ....|+++|.+.||+||+.+||
T Consensus 389 ~~~~~l~~~~i~i~G~~~~-----~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL 463 (981)
T PLN03123 389 SESEFLGDLKVSIVGASKE-----KVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYL 463 (981)
T ss_pred ccCCCcCCeEEEEecCCCC-----cHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHH
Confidence 3467899999999998853 2356778899999999999999999999985 4568899999999999999999
Q ss_pred HHHHHhcccCCCCCCCC
Q 000938 1200 EASALLYRRANEQDFAI 1216 (1218)
Q Consensus 1200 edCl~~wkRVDEsdYlL 1216 (1218)
.+|+....++++..|.+
T Consensus 464 ~ds~~~~~~~p~~~y~~ 480 (981)
T PLN03123 464 VDCFKKKKKLPFDKYKL 480 (981)
T ss_pred HHHHhccccCcchhhhh
Confidence 99999999999998866
No 19
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.03 E-value=4.2e-06 Score=103.33 Aligned_cols=100 Identities=12% Similarity=0.097 Sum_probs=87.9
Q ss_pred hhhHHHHHHHhhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCC-CCCHHHHHHHHcCCc
Q 000938 1114 VDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-LGTDKVNWALSTGRF 1192 (1218)
Q Consensus 1114 ~DVR~IL~eiRrqILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss-~gTeKVk~Alk~GIk 1192 (1218)
.+.+..-..++..+|.||.||.+|+- ..+++.+..++..|||++...++..|+|++... ..|+||++|++|+++
T Consensus 90 ~~~~~l~~~~~~p~~~~~~Vc~tgl~-----~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~wn~~ 164 (811)
T KOG1929|consen 90 RLLDPLRDTMKCPGFFGLKVCLTGLS-----GDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKWNIP 164 (811)
T ss_pred ccCccchhhhcCCcccceEEEecccc-----hHHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhhCCc
Confidence 34555667789999999999999983 335788999999999999999999998888875 566999999999999
Q ss_pred EEcHHHHHHHHHhcccCCCCCCCCCC
Q 000938 1193 VVHPGWVEASALLYRRANEQDFAIKP 1218 (1218)
Q Consensus 1193 IVSPdWLedCl~~wkRVDEsdYlL~p 1218 (1218)
||+.+|+++|......++...|.+.|
T Consensus 165 v~~~~w~~~s~~~~~~~~~~~~e~~~ 190 (811)
T KOG1929|consen 165 VVSDDWLFDSIEKTAVLETKPYEGAP 190 (811)
T ss_pred cccHHHHhhhhccccccccccccccc
Confidence 99999999999999999999998754
No 20
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.82 E-value=6.5e-05 Score=92.05 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=65.7
Q ss_pred hhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHHcCCcEEcHHHHHHH
Q 000938 1126 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEAS 1202 (1218)
Q Consensus 1126 qILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~gTeKVk~Alk~GIkIVSPdWLedC 1202 (1218)
.+|.|.++||||.|+. ..|.++.++++.+||++...|++++++|||....+.|..+|.+.||+|++.+.+.+-
T Consensus 592 ~~l~gktfV~TG~l~~----~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~~~ 664 (669)
T PRK14350 592 SFLFGKKFCITGSFNG----YSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANNLGIKIMSLFDIKSY 664 (669)
T ss_pred CccCCcEEEEecccCC----CCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHHcCCEEecHHHHHHH
Confidence 4699999999998864 247889999999999999999999999999987779999999999999999888764
No 21
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=97.69 E-value=0.00014 Score=89.17 Aligned_cols=74 Identities=19% Similarity=0.100 Sum_probs=65.8
Q ss_pred hccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHHcCCcEEcHHHHHHHHH
Q 000938 1127 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASAL 1204 (1218)
Q Consensus 1127 ILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~gTeKVk~Alk~GIkIVSPdWLedCl~ 1204 (1218)
.|.|.++||||.+.. -.+.+++.+++.+||+|+..|+++++.|||....+.|.++|.+.||+|++.+.+.+.+.
T Consensus 590 ~~~g~~~v~TG~l~~----~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA~~lgI~ii~E~~f~~~l~ 663 (665)
T PRK07956 590 DLAGKTVVLTGTLEQ----LSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKAQELGIEVLDEEEFLRLLG 663 (665)
T ss_pred CccccEEEEeCCCCC----CCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHHHHcCCeEEcHHHHHHHHh
Confidence 389999999998854 24778999999999999999999999999998777999999999999999988877654
No 22
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=97.66 E-value=1.9e-05 Score=97.72 Aligned_cols=97 Identities=20% Similarity=0.201 Sum_probs=84.8
Q ss_pred hhHHHHHHHhhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHHcCCcEE
Q 000938 1115 DVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVV 1194 (1218)
Q Consensus 1115 DVR~IL~eiRrqILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~gTeKVk~Alk~GIkIV 1194 (1218)
-+|.++...=.++|.||+|++++. +.+++.-+...+..+||.....|....|||||++....|+..|.+|+++||
T Consensus 481 ~~~~vp~~~l~~~~e~~~~~~s~~-----~~~~~e~ln~~~~~~gas~~~~f~r~~~~l~~~~~k~s~~~~~~kw~ip~v 555 (811)
T KOG1929|consen 481 NLRPVPAAALSQPFENLTISNSQS-----AEAEREKLNNLANDLGASNVKTFTRKSTTLLTTSAKGSKYEIAGKWSIPIV 555 (811)
T ss_pred hcCcchhhcccccccCceEEeeec-----hHHHHHHHhHhhhhccccccceeeecccEEeccccccchhhhccccCCCcc
Confidence 356677777788999999999874 123455567789999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcccCCCCCCCC
Q 000938 1195 HPGWVEASALLYRRANEQDFAI 1216 (1218)
Q Consensus 1195 SPdWLedCl~~wkRVDEsdYlL 1216 (1218)
+++||+.|.++.+..+...|++
T Consensus 556 T~~wL~e~~rq~~~~~~e~~l~ 577 (811)
T KOG1929|consen 556 TPDWLYECVRQNKGERNEGFLN 577 (811)
T ss_pred ChhHHHhhccccCcccceeecc
Confidence 9999999999999999998876
No 23
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.61 E-value=0.00026 Score=87.27 Aligned_cols=75 Identities=15% Similarity=0.047 Sum_probs=65.4
Q ss_pred hhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCC-HHHHHHHHcCCcEEcHHHHHHHHH
Q 000938 1126 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGT-DKVNWALSTGRFVVHPGWVEASAL 1204 (1218)
Q Consensus 1126 qILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~gT-eKVk~Alk~GIkIVSPdWLedCl~ 1204 (1218)
..|.|.++||||.+... .+.++.++++.+||++...|++++++||+...-+ .|.++|.+.||+|++.+.+.+-+.
T Consensus 608 ~~l~g~~~v~TG~l~~~----~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~ 683 (689)
T PRK14351 608 DALDGLTFVFTGSLSGY----TRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLA 683 (689)
T ss_pred CCCCCcEEEEccCCCCC----CHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHH
Confidence 35999999999988542 4788999999999999999999999999987544 899999999999999988777554
No 24
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=97.55 E-value=0.00017 Score=81.20 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=62.5
Q ss_pred hccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCC--HHHHHHHHcCCcEEcHHHHHHHH
Q 000938 1127 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGT--DKVNWALSTGRFVVHPGWVEASA 1203 (1218)
Q Consensus 1127 ILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~gT--eKVk~Alk~GIkIVSPdWLedCl 1203 (1218)
+|.|.+|||||.+.. .+.+++++++.+||+|.+.|+++++.|||....+ .|.++|.+.||+|++.+=+.+-+
T Consensus 232 l~~g~~~v~TG~l~~-----~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~ll 305 (313)
T PRK06063 232 LVQGMRVALSAEVSR-----THEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLELL 305 (313)
T ss_pred ccCCCEEEEecCCCC-----CHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHHH
Confidence 479999999998752 4688999999999999999999999999997544 79999999999999987665543
No 25
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=97.46 E-value=3.8e-05 Score=92.57 Aligned_cols=82 Identities=20% Similarity=0.342 Sum_probs=71.7
Q ss_pred hhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHHcCCcEEcHHHHHHHHH
Q 000938 1125 RKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASAL 1204 (1218)
Q Consensus 1125 rqILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~gTeKVk~Alk~GIkIVSPdWLedCl~ 1204 (1218)
...|+|+++||+|+.+.. ..+..+++.|||.|..+...++||+||...+.+|+..|+-. .+++.|+|+.+|
T Consensus 116 ~~~m~~vvlcfTg~rkk~------e~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~t~-~~~~rp~wv~~a-- 186 (850)
T KOG3524|consen 116 CELMKDVVMCFTGERKKK------EELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIALVG-VPTMRPDWVTEA-- 186 (850)
T ss_pred chhhcCceeeeeccchhh------HHHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEeec-cceechHhhhhh--
Confidence 347999999999987652 27999999999999999999999999999999999877666 999999999999
Q ss_pred hcccCCCCCCCC
Q 000938 1205 LYRRANEQDFAI 1216 (1218)
Q Consensus 1205 ~wkRVDEsdYlL 1216 (1218)
|++.++..|.+
T Consensus 187 -w~~rn~~yfda 197 (850)
T KOG3524|consen 187 -WKHRNDSYFDA 197 (850)
T ss_pred -hcCcchhhhhh
Confidence 88888776654
No 26
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.00039 Score=84.75 Aligned_cols=72 Identities=19% Similarity=0.124 Sum_probs=65.2
Q ss_pred hhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHHcCCcEEcHHHHHH
Q 000938 1126 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEA 1201 (1218)
Q Consensus 1126 qILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~gTeKVk~Alk~GIkIVSPdWLed 1201 (1218)
.+|.|.++||||.++. -.|.++..+++.+||+|+..|++++..||+...-+.|+.+|++.||+|.+.+|+.+
T Consensus 593 ~~l~gkt~V~TGtL~~----~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~~ 664 (667)
T COG0272 593 SPLAGKTFVLTGTLEG----MSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEFLA 664 (667)
T ss_pred cccCCCEEEEeccCCC----CCHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHHcCCeEecHHHHHH
Confidence 5699999999999863 24678899999999999999999999999999888899999999999999988765
No 27
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=97.40 E-value=0.00038 Score=78.01 Aligned_cols=71 Identities=11% Similarity=0.081 Sum_probs=60.1
Q ss_pred hhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCC---------CCCHHHHHHHHc-----CC
Q 000938 1126 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS---------LGTDKVNWALST-----GR 1191 (1218)
Q Consensus 1126 qILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss---------~gTeKVk~Alk~-----GI 1191 (1218)
.+|.|-++||||.+.. -.+.+++++++.+||+|.+.|+.++++||+.. ..+.|+++|.+. ||
T Consensus 219 ~~l~g~~~vfTG~l~~----~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i 294 (309)
T PRK06195 219 TAFKEEVVVFTGGLAS----MTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNI 294 (309)
T ss_pred ccccCCEEEEccccCC----CCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCc
Confidence 3699999999998853 24788999999999999999999999999984 346899999886 89
Q ss_pred cEEcHHHHH
Q 000938 1192 FVVHPGWVE 1200 (1218)
Q Consensus 1192 kIVSPdWLe 1200 (1218)
+|++.+=++
T Consensus 295 ~ii~E~~f~ 303 (309)
T PRK06195 295 KFLNEEEFL 303 (309)
T ss_pred EEecHHHHH
Confidence 999875433
No 28
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.35 E-value=0.00032 Score=64.31 Aligned_cols=62 Identities=24% Similarity=0.202 Sum_probs=49.8
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhcc-ceEEEEcCCcH
Q 000938 906 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMGNK 984 (1218)
Q Consensus 906 TLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~-YEIVIFTAGtr 984 (1218)
++|+|+|+||+...... . . ...+..+|++.+||+++.+. +.++|+|++.+
T Consensus 1 ~~vfD~D~tl~~~~~~~------~-----------------~------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~ 51 (139)
T cd01427 1 AVLFDLDGTLLDSEPGI------A-----------------E------IEELELYPGVKEALKELKEKGIKLALATNKSR 51 (139)
T ss_pred CeEEccCCceEccCccc------c-----------------c------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchH
Confidence 48999999999775210 0 0 12367899999999999976 99999999999
Q ss_pred HHHHHHHHHHcC
Q 000938 985 LYATEMAKVLDP 996 (1218)
Q Consensus 985 eYAd~VLdiLDP 996 (1218)
.++..+++.+.-
T Consensus 52 ~~~~~~~~~~~~ 63 (139)
T cd01427 52 REVLELLEELGL 63 (139)
T ss_pred HHHHHHHHHcCC
Confidence 999999988754
No 29
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=97.21 E-value=0.00051 Score=84.27 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=61.4
Q ss_pred hhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHHcCCcEEcHHH
Q 000938 1126 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGW 1198 (1218)
Q Consensus 1126 qILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~gTeKVk~Alk~GIkIVSPdW 1198 (1218)
.+|.|.++||||.+.. ..+.++..+++.+||++...|++++++||+....+.|+++|.+.||+|++.+.
T Consensus 583 ~~l~gk~~v~TG~l~~----~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~lgi~ii~E~~ 651 (652)
T TIGR00575 583 SPLAGKTFVLTGTLSQ----MSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQELGIPIINEEE 651 (652)
T ss_pred CCccCcEEEEeccCCC----CCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHHcCCcEechhh
Confidence 4699999999998864 24778999999999999999999999999998666799999999999998764
No 30
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=97.00 E-value=0.00051 Score=85.22 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=65.9
Q ss_pred HHHHHhh-hhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCC-cc-------------------------
Q 000938 1119 ILAAEQR-KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQ-VT------------------------- 1171 (1218)
Q Consensus 1119 IL~eiRr-qILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~k-VT------------------------- 1171 (1218)
.+.+.+. .||.||+++|++.+-. ......-.+.+||.|....-.. .+
T Consensus 916 ~lEe~~gkniFd~cvF~lTsa~~s------d~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qa 989 (1176)
T KOG3548|consen 916 MLEEAIGKNIFDGCVFMLTSANRS------DSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQA 989 (1176)
T ss_pred cchhhhCcchhcceeEEEeccccc------hhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccce
Confidence 4444444 7999999999997543 2344444555777764432111 11
Q ss_pred EEEeCC-CCCHHHHHHHHcCCcEEcHHHHHHHHHhcccCCCCCCCCC
Q 000938 1172 HVVANS-LGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIK 1217 (1218)
Q Consensus 1172 HLVAss-~gTeKVk~Alk~GIkIVSPdWLedCl~~wkRVDEsdYlL~ 1217 (1218)
-||+-. ..|-||-.|++.||++||+.||.+|++.++.+|-.+|+|-
T Consensus 990 lLIsdth~Rt~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLLp 1036 (1176)
T KOG3548|consen 990 LLISDTHYRTHKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYLLP 1036 (1176)
T ss_pred eEeehhhhHHHHHHHHHHcCCCcccHHHHHHHHhccccccchhhccc
Confidence 222222 3578999999999999999999999999999999999983
No 31
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=96.87 E-value=0.0021 Score=72.59 Aligned_cols=75 Identities=24% Similarity=0.353 Sum_probs=61.0
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEec-CCHHHHHHHHhcc-ce
Q 000938 898 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLR-PGIWTFLERASKL-FE 975 (1218)
Q Consensus 898 rLLs~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlR-PGLdEFLeeLSk~-YE 975 (1218)
.+.-+....+|+|||+|||.... -|.+| ||+.++|++|.+. +-
T Consensus 120 ~~~~~~~kvIvFDLDgTLi~~~~-----------------------------------~v~irdPgV~EaL~~LkekGik 164 (301)
T TIGR01684 120 SKVFEPPHVVVFDLDSTLITDEE-----------------------------------PVRIRDPRIYDSLTELKKRGCI 164 (301)
T ss_pred ccccccceEEEEecCCCCcCCCC-----------------------------------ccccCCHHHHHHHHHHHHCCCE
Confidence 35567788999999999996531 15688 9999999999975 89
Q ss_pred EEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecC
Q 000938 976 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1009 (1218)
Q Consensus 976 IVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRD 1009 (1218)
+.|+|.+.+.++..+++.++-.+ +|. .|++.+
T Consensus 165 LaIaTS~~Re~v~~~L~~lGLd~-YFd-vIIs~G 196 (301)
T TIGR01684 165 LVLWSYGDRDHVVESMRKVKLDR-YFD-IIISGG 196 (301)
T ss_pred EEEEECCCHHHHHHHHHHcCCCc-ccC-EEEECC
Confidence 99999999999999999988875 664 355443
No 32
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.84 E-value=0.00081 Score=66.03 Aligned_cols=81 Identities=15% Similarity=0.076 Sum_probs=53.8
Q ss_pred EecCCHHHHHHHHh-ccceEEEEcCC-cHHHHHHHHHHHcCCC------ceeeeeeeecCCCCCCCCCCCCCCccccccc
Q 000938 958 KLRPGIWTFLERAS-KLFEMHLYTMG-NKLYATEMAKVLDPKG------VLFAGRVISRGDDGDPFDGDERVPKSKDLEG 1029 (1218)
Q Consensus 958 KlRPGLdEFLeeLS-k~YEIVIFTAG-treYAd~VLdiLDP~g------~LF~~RIySRDdc~~~~dG~Er~~yiKDLsr 1029 (1218)
++.||+.++|+++. ..+.++|.|++ .+.|+..+++.+.+.+ .+|.. ++..++. + .+..+.+=+.
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~-~~~~~~~-----p-kp~~~~~a~~- 100 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDP-LTIGYWL-----P-KSPRLVEIAL- 100 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhh-hhhcCCC-----c-HHHHHHHHHH-
Confidence 57899999999996 47999999999 9999999998876311 23332 2211110 0 1112333333
Q ss_pred ccC--CC-CcEEEEeCCCCc
Q 000938 1030 VLG--ME-SAVVIIDDSVRV 1046 (1218)
Q Consensus 1030 VLG--RD-srVVIVDDspdV 1046 (1218)
.+| .. +.+++|||++..
T Consensus 101 ~lg~~~~p~~~l~igDs~~n 120 (128)
T TIGR01681 101 KLNGVLKPKSILFVDDRPDN 120 (128)
T ss_pred HhcCCCCcceEEEECCCHhH
Confidence 457 65 899999999643
No 33
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=96.72 E-value=0.0034 Score=77.52 Aligned_cols=84 Identities=17% Similarity=0.118 Sum_probs=66.6
Q ss_pred hhhccCcee-eeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeC--CCCCHHHHHHHHcCCcEEcHHHHHH
Q 000938 1125 RKILAGCRI-VFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVAN--SLGTDKVNWALSTGRFVVHPGWVEA 1201 (1218)
Q Consensus 1125 rqILkGCvI-vFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAs--s~gTeKVk~Alk~GIkIVSPdWLed 1201 (1218)
..+|.|+.+ +|+|+- ..+..+.+.+++-.+||++...+.+.+||.|+. ...+.+-.+|++.++-||+|.||++
T Consensus 631 s~if~gl~f~Vlsgt~----~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlld 706 (881)
T KOG0966|consen 631 SNIFDGLEFCVLSGTS----ETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLD 706 (881)
T ss_pred hhhhcCeeEEEecCCc----ccccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHH
Confidence 358999998 556642 122347899999999999999999999999973 4556666778888999999999999
Q ss_pred HHHhcccCCCC
Q 000938 1202 SALLYRRANEQ 1212 (1218)
Q Consensus 1202 Cl~~wkRVDEs 1212 (1218)
|+...+-++-.
T Consensus 707 cc~~~~l~p~~ 717 (881)
T KOG0966|consen 707 CCKKQRLLPWL 717 (881)
T ss_pred HHhhhhccccc
Confidence 99977655533
No 34
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=96.66 E-value=0.0034 Score=71.10 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=60.0
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEec-CCHHHHHHHHhc-cce
Q 000938 898 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLR-PGIWTFLERASK-LFE 975 (1218)
Q Consensus 898 rLLs~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlR-PGLdEFLeeLSk-~YE 975 (1218)
.+.-..+..+|+|||+|||.... -|.+| |++.++|++|.+ .+.
T Consensus 122 ~~~~~~~~~i~~D~D~TL~~~~~-----------------------------------~v~irdp~V~EtL~eLkekGik 166 (303)
T PHA03398 122 SLVWEIPHVIVFDLDSTLITDEE-----------------------------------PVRIRDPFVYDSLDELKERGCV 166 (303)
T ss_pred eeEeeeccEEEEecCCCccCCCC-----------------------------------ccccCChhHHHHHHHHHHCCCE
Confidence 44557788999999999996631 15688 999999999997 599
Q ss_pred EEEEcCCcHHHHHHHHHHHcCCCceeeeeeeec
Q 000938 976 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISR 1008 (1218)
Q Consensus 976 IVIFTAGtreYAd~VLdiLDP~g~LF~~RIySR 1008 (1218)
+.|+|++.+.++..+++.+.-.+ +|.. +++.
T Consensus 167 LaIvTNg~Re~v~~~Le~lgL~~-yFDv-II~~ 197 (303)
T PHA03398 167 LVLWSYGNREHVVHSLKETKLEG-YFDI-IICG 197 (303)
T ss_pred EEEEcCCChHHHHHHHHHcCCCc-cccE-EEEC
Confidence 99999999999999999888764 6643 5543
No 35
>COG5275 BRCT domain type II [General function prediction only]
Probab=96.59 E-value=0.0041 Score=67.55 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=68.3
Q ss_pred HHHHhhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCC-CCCHHHHHHHHcCCcEEcHHH
Q 000938 1120 LAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-LGTDKVNWALSTGRFVVHPGW 1198 (1218)
Q Consensus 1120 L~eiRrqILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss-~gTeKVk~Alk~GIkIVSPdW 1198 (1218)
..+..+.+|.|.+|+|+|+++. ..+.+...++..+||+|+.-...++|.||+.. .|..|+..+++.+|+++..+=
T Consensus 149 ~peg~~~cL~G~~fVfTG~l~T----lsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidEeg 224 (276)
T COG5275 149 VPEGERECLKGKVFVFTGDLKT----LSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEG 224 (276)
T ss_pred CCCCCcccccccEEEEeccccc----ccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCCccccHHH
Confidence 4566788999999999999873 24667788899999999999999999999986 688899999999999999887
Q ss_pred HHHHH
Q 000938 1199 VEASA 1203 (1218)
Q Consensus 1199 LedCl 1203 (1218)
+..-+
T Consensus 225 f~~LI 229 (276)
T COG5275 225 FDSLI 229 (276)
T ss_pred HHHHH
Confidence 75533
No 36
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.54 E-value=0.0031 Score=79.75 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=65.7
Q ss_pred ceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCC-CCCHHHHHHHHcCCcEEcHHHHHHHHHhcccC
Q 000938 1131 CRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-LGTDKVNWALSTGRFVVHPGWVEASALLYRRA 1209 (1218)
Q Consensus 1131 CvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss-~gTeKVk~Alk~GIkIVSPdWLedCl~~wkRV 1209 (1218)
..+.|+++.. ...+...++.+|+.|.... .+.||+|+.+ ..|.|.-.|+..|++||+++||.+|......+
T Consensus 660 ~~~lfs~~~~-------~~~~k~~~k~lg~s~~ss~-~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~ 731 (896)
T KOG2043|consen 660 IEVLFSDKND-------GKNYKLAKKFLGGSVASSD-SEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKL 731 (896)
T ss_pred eeeeeeeccC-------chhhhhHHhhccceeeccc-ccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccc
Confidence 6678888632 2335566788888887654 5899999997 57899999999999999999999999999999
Q ss_pred CCCCCCCC
Q 000938 1210 NEQDFAIK 1217 (1218)
Q Consensus 1210 DEsdYlL~ 1217 (1218)
+|..|.+.
T Consensus 732 dek~yil~ 739 (896)
T KOG2043|consen 732 DEKPYILH 739 (896)
T ss_pred cCcccccc
Confidence 99999873
No 37
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=96.51 E-value=0.012 Score=56.80 Aligned_cols=101 Identities=17% Similarity=0.078 Sum_probs=63.7
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhc-cceEEEEcCCc
Q 000938 905 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGN 983 (1218)
Q Consensus 905 LTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk-~YEIVIFTAGt 983 (1218)
+.|+||+|+||++... ..++. -+..+.|++.++|++|.+ .|.++|.|++.
T Consensus 1 k~~~~D~dgtL~~~~~--~~~~~---------------------------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVP--YVDDE---------------------------DERILYPEVPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred CEEEEeCCCceecCCC--CCCCH---------------------------HHheeCCCHHHHHHHHHHCCCEEEEEECCc
Confidence 3689999999996421 11110 024578999999999974 59999999999
Q ss_pred --------HHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCccccccccc-CCC-CcEEEEeCC
Q 000938 984 --------KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL-GME-SAVVIIDDS 1043 (1218)
Q Consensus 984 --------reYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVL-GRD-srVVIVDDs 1043 (1218)
..++..+++.+.-. ++. ++....+ .+. ....+.+=++ .+ +.+ +.+|+|+|+
T Consensus 52 ~~~~~~~~~~~~~~~l~~~~l~--~~~--~~~~~~~---~KP-~~~~~~~~~~-~~~~~~~~~~v~IGD~ 112 (132)
T TIGR01662 52 GIGRGKFSSGRVARRLEELGVP--IDV--LYACPHC---RKP-KPGMFLEALK-RFNEIDPEESVYVGDQ 112 (132)
T ss_pred cccccHHHHHHHHHHHHHCCCC--EEE--EEECCCC---CCC-ChHHHHHHHH-HcCCCChhheEEEcCC
Confidence 88888888887643 222 2222111 111 1112222233 45 355 889999994
No 38
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=96.48 E-value=0.0045 Score=64.89 Aligned_cols=99 Identities=11% Similarity=-0.012 Sum_probs=63.8
Q ss_pred EEEEecCCHHHHHHHHh-ccceEEEEcCC-cHHHHHHHHHHHcCC--C------ceeeeeeeecCCCCCCCCCCCCCCcc
Q 000938 955 MWTKLRPGIWTFLERAS-KLFEMHLYTMG-NKLYATEMAKVLDPK--G------VLFAGRVISRGDDGDPFDGDERVPKS 1024 (1218)
Q Consensus 955 ~YVKlRPGLdEFLeeLS-k~YEIVIFTAG-treYAd~VLdiLDP~--g------~LF~~RIySRDdc~~~~dG~Er~~yi 1024 (1218)
.-+.++||+.++|+.|. +.+.+.|.|+. ...|+..+++.++-. | .+|.. ++.-++. ...... ....
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~-iv~~~~~-~~~kp~--~~i~ 117 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDD-RIEIYKP-NKAKQL--EMIL 117 (174)
T ss_pred CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhcee-eeeccCC-chHHHH--HHHH
Confidence 35789999999999997 56999999988 999999999998854 2 46765 3332211 000000 0001
Q ss_pred ccccccc--CCC-CcEEEEeCCCCccccCcCCcccc
Q 000938 1025 KDLEGVL--GME-SAVVIIDDSVRVWPHNKLNLIVV 1057 (1218)
Q Consensus 1025 KDLsrVL--GRD-srVVIVDDspdVW~~qpdN~I~I 1057 (1218)
+.+...+ |.. +.+|+|||++.-...-..+++.+
T Consensus 118 ~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~ 153 (174)
T TIGR01685 118 QKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTS 153 (174)
T ss_pred HHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEE
Confidence 2222222 355 89999999997665434555544
No 39
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=96.31 E-value=0.0043 Score=76.11 Aligned_cols=79 Identities=27% Similarity=0.343 Sum_probs=65.3
Q ss_pred CceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCC------CCCHHHHHHHHcCCcEEcHHHHHHHH
Q 000938 1130 GCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS------LGTDKVNWALSTGRFVVHPGWVEASA 1203 (1218)
Q Consensus 1130 GCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss------~gTeKVk~Alk~GIkIVSPdWLedCl 1203 (1218)
-.+.+.+|.-|. +...+.+.|.. ++...+++.|||+|++- .+|.||..++..|.+|++.+|+.+|+
T Consensus 478 k~~~~~s~l~p~-----ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~ 549 (684)
T KOG4362|consen 478 KLVLLVSGLTPS-----EKQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASL 549 (684)
T ss_pred ceeeeeccCCcc-----hHHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHH
Confidence 345577777554 23456666665 77788899999999984 47899999999999999999999999
Q ss_pred HhcccCCCCCCCC
Q 000938 1204 LLYRRANEQDFAI 1216 (1218)
Q Consensus 1204 ~~wkRVDEsdYlL 1216 (1218)
...+.++|..|.|
T Consensus 550 k~~~~~~eepfEl 562 (684)
T KOG4362|consen 550 KLRKWVSEEPFEL 562 (684)
T ss_pred HhcCCCCCCCeeE
Confidence 9999999999987
No 40
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.08 E-value=0.018 Score=59.35 Aligned_cols=108 Identities=13% Similarity=0.077 Sum_probs=66.4
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhc-cceEEEEcCC-
Q 000938 905 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG- 982 (1218)
Q Consensus 905 LTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk-~YEIVIFTAG- 982 (1218)
+.|.||.|+||++...+ .. ..... -++++-||+.++|++|.+ .|.++|.|+.
T Consensus 2 ~~~~~d~dg~l~~~~~~----~~---------------------~~~~~-~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~ 55 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS----DF---------------------QVDAL-EKLRFEKGVIPALLKLKKAGYKFVMVTNQD 55 (161)
T ss_pred CEEEEeCCCCccccCCC----cc---------------------ccCCH-HHeeECCCHHHHHHHHHHCCCeEEEEeCCc
Confidence 57999999999985321 00 00000 146788999999999986 5999999996
Q ss_pred --------------cHHHHHHHHHHHcCCCceeeeeeee----cCCCCCCCCCCCCCCcccccccccCCC-CcEEEEeCC
Q 000938 983 --------------NKLYATEMAKVLDPKGVLFAGRVIS----RGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDS 1043 (1218)
Q Consensus 983 --------------treYAd~VLdiLDP~g~LF~~RIyS----RDdc~~~~dG~Er~~yiKDLsrVLGRD-srVVIVDDs 1043 (1218)
...|+..+++.++-. |...+++ .+++ .+.++. . ..+..+.+.++.+ +.+++|+|+
T Consensus 56 g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~-~~~KP~-~-~~~~~~~~~~~~~~~e~l~IGD~ 129 (161)
T TIGR01261 56 GLGTPSFPQADFDGPHNLMLQIFRSQGII---FDDVLICPHFPDDNC-DCRKPK-I-KLLEPYLKKNLIDKARSYVIGDR 129 (161)
T ss_pred cccCCcCCHHHHHHHHHHHHHHHHHCCCc---eeEEEECCCCCCCCC-CCCCCC-H-HHHHHHHHHcCCCHHHeEEEeCC
Confidence 366777777777664 6554454 1222 112211 0 0111222234555 789999998
Q ss_pred C
Q 000938 1044 V 1044 (1218)
Q Consensus 1044 p 1044 (1218)
.
T Consensus 130 ~ 130 (161)
T TIGR01261 130 E 130 (161)
T ss_pred H
Confidence 4
No 41
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.93 E-value=0.0096 Score=66.79 Aligned_cols=107 Identities=20% Similarity=0.181 Sum_probs=66.4
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhc-cceEEEEcC
Q 000938 903 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM 981 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk-~YEIVIFTA 981 (1218)
.+++||||||+||....... + .+ .-.. +....|++.++|+.+.+ .+-+.|.|+
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e----------------~--g~--~~i~------~~~~~~~~~e~L~~L~~~Gi~lai~S~ 55 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGE----------------D--GI--DNLN------LSPLHKTLQEKIKTLKKQGFLLALASK 55 (320)
T ss_pred CeEEEEEcCCCCCCCCEEcc----------------C--Cc--cccc------cCccHHHHHHHHHHHHhCCCEEEEEcC
Confidence 47899999999999664210 0 00 0000 12347899999999974 589999999
Q ss_pred CcHHHHHHHHHH----HcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEeCCCC
Q 000938 982 GNKLYATEMAKV----LDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 1045 (1218)
Q Consensus 982 GtreYAd~VLdi----LDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-srVVIVDDspd 1045 (1218)
....+|..+++. +.... +|..-... + +. .. ..++-+..-+|.. +.+|+|||++.
T Consensus 56 n~~~~a~~~l~~~~~~~~~~~-~f~~~~~~------~-~p-k~-~~i~~~~~~l~i~~~~~vfidD~~~ 114 (320)
T TIGR01686 56 NDEDDAKKVFERRKDFILQAE-DFDARSIN------W-GP-KS-ESLRKIAKKLNLGTDSFLFIDDNPA 114 (320)
T ss_pred CCHHHHHHHHHhCccccCcHH-HeeEEEEe------c-Cc-hH-HHHHHHHHHhCCCcCcEEEECCCHH
Confidence 999999999986 43332 45431111 1 10 00 1122222235655 78999999885
No 42
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=95.91 E-value=0.03 Score=57.78 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=62.5
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHh-ccceEEEEcC
Q 000938 903 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTM 981 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLS-k~YEIVIFTA 981 (1218)
++++++||+|+||+-+.... ..+. .| .-|..+-||+.++|++|. +.|.+.|.|+
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~-~~~~--------------~~----------~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN 66 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGK-VFPT--------------SA----------SDWRFLYPEIPAKLQELDDEGYKIVIFTN 66 (166)
T ss_pred cCcEEEEeCCCceEecCCCC-cccC--------------Ch----------HHeEEecCCHHHHHHHHHHCCCEEEEEeC
Confidence 45678999999999753210 0000 01 013445699999999996 6799999999
Q ss_pred CcHH------------HHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccC--CC-CcEEEEeCCC
Q 000938 982 GNKL------------YATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG--ME-SAVVIIDDSV 1044 (1218)
Q Consensus 982 Gtre------------YAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLG--RD-srVVIVDDsp 1044 (1218)
+... ++..+++.++-. + .-++.-+.. ...+.. +. .++-+-..+| .+ +.+++|.|++
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~---~-~~ii~~~~~-~~~KP~-p~-~~~~~~~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 67 QSGIGRGKLSAESFKNKIEAFLEKLKVP---I-QVLAATHAG-LYRKPM-TG-MWEYLQSQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred CcccccCcccHHHHHHHHHHHHHHcCCC---E-EEEEecCCC-CCCCCc-cH-HHHHHHHHcCCCCCchhcEEEECCC
Confidence 8763 455666665542 2 223332211 111110 00 1111212345 44 7899999986
No 43
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=95.89 E-value=0.007 Score=72.03 Aligned_cols=80 Identities=23% Similarity=0.378 Sum_probs=63.9
Q ss_pred hhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEeccc----------CCCccEEEeCCCCC-HHHHHHHHcCCcE
Q 000938 1125 RKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHI----------DDQVTHVVANSLGT-DKVNWALSTGRFV 1193 (1218)
Q Consensus 1125 rqILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdV----------d~kVTHLVAss~gT-eKVk~Alk~GIkI 1193 (1218)
+.+|+||++.++.-+|. ..|.-+|..+||.|..+= +..+||=|+..++- .+| .|..-
T Consensus 325 kslF~glkFfl~reVPr-------esL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v-----~gR~Y 392 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREVPR-------ESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSV-----IGRTY 392 (570)
T ss_pred HHHhhcceeeeeccCch-------HHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCcccee-----eeeee
Confidence 35899999999987664 467778999999998882 34579999987651 122 47789
Q ss_pred EcHHHHHHHHHhcccCCCCCCCC
Q 000938 1194 VHPGWVEASALLYRRANEQDFAI 1216 (1218)
Q Consensus 1194 VSPdWLedCl~~wkRVDEsdYlL 1216 (1218)
|.|+||+||+....+++-..|..
T Consensus 393 vQPQWvfDsvNar~llpt~~Y~~ 415 (570)
T KOG2481|consen 393 VQPQWVFDSVNARLLLPTEKYFP 415 (570)
T ss_pred ecchhhhhhccchhhccHhhhCC
Confidence 99999999999999999888864
No 44
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.87 E-value=0.0073 Score=65.99 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=83.4
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhcc-ceEEEE
Q 000938 901 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLY 979 (1218)
Q Consensus 901 s~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~-YEIVIF 979 (1218)
..++..+++|+|+||....... |. +|.. ..-....|++.++|+++.+. +.++|.
T Consensus 155 ~~~~~~~~~D~dgtl~~~~~~~---~~--~~~~--------------------~~~~~~~~~~~~~l~~l~~~g~~i~i~ 209 (300)
T PHA02530 155 PGLPKAVIFDIDGTLAKMGGRS---PY--DWTK--------------------VKEDKPNPMVVELVKMYKAAGYEIIVV 209 (300)
T ss_pred CCCCCEEEEECCCcCcCCCCCC---cc--chhh--------------------cccCCCChhHHHHHHHHHhCCCEEEEE
Confidence 4557899999999999664211 10 1110 01245789999999999764 999999
Q ss_pred cCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCC----CC-CCCCCcccccccccCC-C-CcEEEEeCCCCccccCcC
Q 000938 980 TMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPF----DG-DERVPKSKDLEGVLGM-E-SAVVIIDDSVRVWPHNKL 1052 (1218)
Q Consensus 980 TAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~----dG-~Er~~yiKDLsrVLGR-D-srVVIVDDspdVW~~qpd 1052 (1218)
|+....++..+++.|+..+.+|.. ++..+....+. .+ ..+..+.+-|.+ ++. . ..+|+|||++..-..-..
T Consensus 210 T~r~~~~~~~~l~~l~~~~~~f~~-i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~-~~~~~~~~~~~vgD~~~d~~~a~~ 287 (300)
T PHA02530 210 SGRDGVCEEDTVEWLRQTDIWFDD-LIGRPPDMHFQREQGDKRPDDVVKEEIFWE-KIAPKYDVLLAVDDRDQVVDMWRR 287 (300)
T ss_pred eCCChhhHHHHHHHHHHcCCchhh-hhCCcchhhhcccCCCCCCcHHHHHHHHHH-HhccCceEEEEEcCcHHHHHHHHH
Confidence 999999999999999988767754 55444110000 00 001122333443 355 3 789999999976554445
Q ss_pred Ccccc
Q 000938 1053 NLIVV 1057 (1218)
Q Consensus 1053 N~I~I 1057 (1218)
++|.+
T Consensus 288 ~Gi~~ 292 (300)
T PHA02530 288 IGLEC 292 (300)
T ss_pred hCCeE
Confidence 56554
No 45
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=95.72 E-value=0.027 Score=63.70 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=59.3
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEE-ecCCHHHHHHHHhccc-e
Q 000938 898 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTK-LRPGIWTFLERASKLF-E 975 (1218)
Q Consensus 898 rLLs~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVK-lRPGLdEFLeeLSk~Y-E 975 (1218)
.+.-..+-++|+|||+|||.... + +. .-|.+.+.|.++.+.+ -
T Consensus 116 ~~~~~~phVIVfDlD~TLItd~~-----~------------------------------v~Ir~~~v~~sL~~Lk~~g~v 160 (297)
T PF05152_consen 116 SLVWEPPHVIVFDLDSTLITDEG-----D------------------------------VRIRDPAVYDSLRELKEQGCV 160 (297)
T ss_pred hccCCCCcEEEEECCCcccccCC-----c------------------------------cccCChHHHHHHHHHHHcCCE
Confidence 44557888999999999996642 0 11 2378889999999776 8
Q ss_pred EEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecC
Q 000938 976 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1009 (1218)
Q Consensus 976 IVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRD 1009 (1218)
+++|+.|.++|+..-++.+.-.+ +|.- |+++.
T Consensus 161 LvLWSyG~~eHV~~sl~~~~L~~-~Fd~-ii~~G 192 (297)
T PF05152_consen 161 LVLWSYGNREHVRHSLKELKLEG-YFDI-IICGG 192 (297)
T ss_pred EEEecCCCHHHHHHHHHHhCCcc-ccEE-EEeCC
Confidence 99999999999999999998775 7764 77654
No 46
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=95.61 E-value=0.049 Score=54.41 Aligned_cols=65 Identities=18% Similarity=0.094 Sum_probs=46.1
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHh-ccceEEEEcCCc
Q 000938 905 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTMGN 983 (1218)
Q Consensus 905 LTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLS-k~YEIVIFTAGt 983 (1218)
.+|++|+|+||+...... ....| . -+.+.||+.++|+.|. +.|.++|.|++.
T Consensus 1 ~~~~~d~dgtl~~~~~~~----~~~~~---------------------~--~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSD----YPRSL---------------------D--DWQLRPGAVPALLTLRAAGYTVVVVTNQS 53 (147)
T ss_pred CeEEEeCCCceeccCCcc----cCCCH---------------------H--HeEEcCChHHHHHHHHHCCCEEEEEeCCC
Confidence 378999999999875310 00000 0 1467899999999997 569999999987
Q ss_pred H---------------HHHHHHHHHHcC
Q 000938 984 K---------------LYATEMAKVLDP 996 (1218)
Q Consensus 984 r---------------eYAd~VLdiLDP 996 (1218)
+ .++..+++.++-
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l 81 (147)
T TIGR01656 54 GIGRGYFSAEAFRAPNGRVLELLRQLGV 81 (147)
T ss_pred cccCCcCCHHHHHHHHHHHHHHHHhCCC
Confidence 4 566666666654
No 47
>COG4996 Predicted phosphatase [General function prediction only]
Probab=95.48 E-value=0.025 Score=58.13 Aligned_cols=117 Identities=21% Similarity=0.201 Sum_probs=77.4
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeec-cceEEEEecCCHHHHHHHHhc-cceEEEEcCCc
Q 000938 906 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFP-HMGMWTKLRPGIWTFLERASK-LFEMHLYTMGN 983 (1218)
Q Consensus 906 TLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~-~~~~YVKlRPGLdEFLeeLSk-~YEIVIFTAGt 983 (1218)
.+|||+|+||..-...+.+.|-...+ ..-.+. ..+.-|.+||++.+||+++.. .|-+-.+|=..
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rV--------------s~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~ 67 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRV--------------SSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNF 67 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceec--------------CccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCc
Confidence 47999999998554333333321100 000111 246679999999999999984 68888999999
Q ss_pred HHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccC-----C-----CCcEEEEeCCCCccc
Q 000938 984 KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG-----M-----ESAVVIIDDSVRVWP 1048 (1218)
Q Consensus 984 reYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLG-----R-----DsrVVIVDDspdVW~ 1048 (1218)
..-|-++++.||-.. ||.+-++-. +. .++ +=|.+++. | ++++|.+|||.-.+.
T Consensus 68 ~~kA~~aLral~~~~-yFhy~VieP--hP--~K~-------~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~ 130 (164)
T COG4996 68 EDKAIKALRALDLLQ-YFHYIVIEP--HP--YKF-------LMLSQLLREINTERNQKIKPSEIVYLDDRRIHFG 130 (164)
T ss_pred hHHHHHHHHHhchhh-hEEEEEecC--CC--hhH-------HHHHHHHHHHHHhhccccCcceEEEEecccccHH
Confidence 999999999999987 898755522 21 111 11222221 1 378999999986553
No 48
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=95.46 E-value=0.024 Score=62.22 Aligned_cols=101 Identities=10% Similarity=0.109 Sum_probs=58.6
Q ss_pred hhcCCCeEEEEeCCCceeecccCC-----CCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhc-
Q 000938 899 MFSARKLCLVLDLDHTLLNSAKFH-----EVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK- 972 (1218)
Q Consensus 899 LLs~kKLTLVLDLDETLIHSs~~~-----evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk- 972 (1218)
|-.++++.++|||||||+.+...- ..++..-.++. ..++...+. ....-.....|++.+||+++.+
T Consensus 58 ~~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~-------g~~~w~~~~-~~~~~~s~p~~~a~elL~~l~~~ 129 (237)
T TIGR01672 58 LEGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLK-------NQVFWEKVN-NGWDEFSIPKEVARQLIDMHQRR 129 (237)
T ss_pred cCCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhc-------ChHHHHHHH-HhcccCCcchhHHHHHHHHHHHC
Confidence 334566799999999999997410 00110000000 000000000 0011223444559999999975
Q ss_pred cceEEEEcCC----cHHHHHHHHHHHcCCCceeeeeeeecC
Q 000938 973 LFEMHLYTMG----NKLYATEMAKVLDPKGVLFAGRVISRG 1009 (1218)
Q Consensus 973 ~YEIVIFTAG----treYAd~VLdiLDP~g~LF~~RIySRD 1009 (1218)
.+.|+|.|+. .+.++..+++.+.-.. +|. -++..+
T Consensus 130 G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~-~f~-~i~~~d 168 (237)
T TIGR01672 130 GDAIFFVTGRTPGKTDTVSKTLAKNFHIPA-MNP-VIFAGD 168 (237)
T ss_pred CCEEEEEeCCCCCcCHHHHHHHHHHhCCch-hee-EEECCC
Confidence 5999999998 7779999998887654 564 355543
No 49
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=95.41 E-value=0.014 Score=67.82 Aligned_cols=93 Identities=18% Similarity=0.309 Sum_probs=68.9
Q ss_pred chhhHHHHHHHh---hhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEe-----------cccCCCccEEEeCCC
Q 000938 1113 DVDVRNILAAEQ---RKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCT-----------KHIDDQVTHVVANSL 1178 (1218)
Q Consensus 1113 ~~DVR~IL~eiR---rqILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVs-----------sdVd~kVTHLVAss~ 1178 (1218)
..|.......+- ..+|+|.++++|.-+|. ..|.-++..+||.|. .+++..|||-||-.+
T Consensus 333 n~d~~~~vsk~~Ss~~slFS~f~FyisreVp~-------dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp 405 (591)
T COG5163 333 NKDIMEMVSKPCSSLKSLFSGFKFYISREVPG-------DSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRP 405 (591)
T ss_pred chhhhhhccCcCcchhhhhhceEEEEeccccc-------hHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccch
Confidence 346555544333 34799999999987775 245666899999884 456778999999875
Q ss_pred CCHHHHHHHHcCCcEEcHHHHHHHHHhcccCCCCCCCC
Q 000938 1179 GTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAI 1216 (1218)
Q Consensus 1179 gTeKVk~Alk~GIkIVSPdWLedCl~~wkRVDEsdYlL 1216 (1218)
- ..-+-.|...|.|+||++|+..++++.-..|.+
T Consensus 406 ~----~~~kvegrtYiQPQw~fDsiNkG~l~~~~~Y~~ 439 (591)
T COG5163 406 V----MKNKVEGRTYIQPQWLFDSINKGKLACVENYCV 439 (591)
T ss_pred h----hhhhhcceeeechHHHHhhhccccchhhhhccc
Confidence 3 111225889999999999999999998888864
No 50
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=95.28 E-value=0.085 Score=54.13 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=38.1
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhcc-ceEEEEcCC
Q 000938 904 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMG 982 (1218)
Q Consensus 904 KLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~-YEIVIFTAG 982 (1218)
.+.|+||+|+||+-... .... . .. .+...||+.++|++|.+. |.+.|.|++
T Consensus 3 ~~~~~~d~~~t~~~~~~-----~~~~-~---------------------~~-~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~ 54 (181)
T PRK08942 3 MKAIFLDRDGVINVDSD-----GYVK-S---------------------PD-EWIPIPGSIEAIARLKQAGYRVVVATNQ 54 (181)
T ss_pred ccEEEEECCCCcccCCc-----cccC-C---------------------HH-HeEECCCHHHHHHHHHHCCCEEEEEeCC
Confidence 46899999999875431 1100 0 00 245789999999999874 999999998
Q ss_pred cH
Q 000938 983 NK 984 (1218)
Q Consensus 983 tr 984 (1218)
..
T Consensus 55 ~~ 56 (181)
T PRK08942 55 SG 56 (181)
T ss_pred cc
Confidence 73
No 51
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=95.27 E-value=0.046 Score=56.05 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=24.5
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcH
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNK 984 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtr 984 (1218)
+.+-||+.++|++|.+ .|.++|.|+...
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4567999999999985 599999999985
No 52
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=95.26 E-value=0.048 Score=60.91 Aligned_cols=89 Identities=22% Similarity=0.306 Sum_probs=56.9
Q ss_pred cCCCeEEEEeCCCceeecccC--------CCCCCc-hhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHh
Q 000938 901 SARKLCLVLDLDHTLLNSAKF--------HEVDPV-HDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS 971 (1218)
Q Consensus 901 s~kKLTLVLDLDETLIHSs~~--------~evdP~-~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLS 971 (1218)
..+++.+|||||||++..+.. ...++. .++|.. .--...-||+.+||+.+.
T Consensus 72 ~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~--------------------~~~a~~ipGA~e~L~~L~ 131 (266)
T TIGR01533 72 KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQ--------------------AAQAKPVAGALDFLNYAN 131 (266)
T ss_pred CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHH--------------------cCCCCcCccHHHHHHHHH
Confidence 578999999999999977521 001110 111110 012446799999999996
Q ss_pred -ccceEEEEcCCcHHHHHHHHHHHcCCCc--eeeeeeeecC
Q 000938 972 -KLFEMHLYTMGNKLYATEMAKVLDPKGV--LFAGRVISRG 1009 (1218)
Q Consensus 972 -k~YEIVIFTAGtreYAd~VLdiLDP~g~--LF~~RIySRD 1009 (1218)
+.+.|+|.|+....+.+..++.|...|- .+...|+.|+
T Consensus 132 ~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~ 172 (266)
T TIGR01533 132 SKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKK 172 (266)
T ss_pred HCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCC
Confidence 4589999999988877766666655442 1223455554
No 53
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=95.04 E-value=0.038 Score=58.12 Aligned_cols=121 Identities=20% Similarity=0.210 Sum_probs=63.0
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhc-cceEEEEc-C
Q 000938 904 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYT-M 981 (1218)
Q Consensus 904 KLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk-~YEIVIFT-A 981 (1218)
.+.+|+|||.||-.......+.|-.. . . .... -.....+.-|.+-|++.+.|++|.. ..+|.|-+ .
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~----~----~--~~~~--~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt 70 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFK----K----I--SNGN--VVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRT 70 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EE----E-------TTS----EEETT--EE---TTHHHHHHHHHHCT--EEEEE--
T ss_pred CcEEEEcCcCCCCchhHhhccCCCce----e----c--CCCC--EEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECC
Confidence 45789999999986653222222100 0 0 0000 1112345568999999999999985 78888888 5
Q ss_pred CcHHHHHHHHHHHcCC---------CceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEeCCCC
Q 000938 982 GNKLYATEMAKVLDPK---------GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 1045 (1218)
Q Consensus 982 GtreYAd~VLdiLDP~---------g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-srVVIVDDspd 1045 (1218)
....+|.++++.|+-. ..+|.+--+... + ...+.+.|.+-.|-+ +.+|.+||...
T Consensus 71 ~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g-s--------K~~Hf~~i~~~tgI~y~eMlFFDDe~~ 135 (169)
T PF12689_consen 71 DEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG-S--------KTTHFRRIHRKTGIPYEEMLFFDDESR 135 (169)
T ss_dssp S-HHHHHHHHHHTT-C----------CCECEEEESSS----------HHHHHHHHHHHH---GGGEEEEES-HH
T ss_pred CChHHHHHHHHhcCCCccccccccchhhcchhheecC-c--------hHHHHHHHHHhcCCChhHEEEecCchh
Confidence 6789999999998866 124443222221 1 113455566556777 88999999854
No 54
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=93.38 E-value=0.14 Score=56.50 Aligned_cols=53 Identities=4% Similarity=-0.028 Sum_probs=38.1
Q ss_pred EEEEecCCHHHHHHHH-hccceEEEEcC----CcHHHHHHHHHHHcC-CCceeeeeeeec
Q 000938 955 MWTKLRPGIWTFLERA-SKLFEMHLYTM----GNKLYATEMAKVLDP-KGVLFAGRVISR 1008 (1218)
Q Consensus 955 ~YVKlRPGLdEFLeeL-Sk~YEIVIFTA----GtreYAd~VLdiLDP-~g~LF~~RIySR 1008 (1218)
.+....||+.+||+.+ .+-++|++-|+ ....++..+++.+.- ...+|.- ++..
T Consensus 111 ~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~v-il~g 169 (237)
T PRK11009 111 EFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPV-IFAG 169 (237)
T ss_pred ccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeE-EEcC
Confidence 3566677799999999 56799999999 457788888886653 2335643 5543
No 55
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=93.27 E-value=0.33 Score=56.43 Aligned_cols=54 Identities=19% Similarity=0.157 Sum_probs=40.2
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhc-cceEEEEcC
Q 000938 903 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM 981 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk-~YEIVIFTA 981 (1218)
+|.+|+||=|+||+..... .. . ...-..+.+.||+.+||++|.+ .|.++|.|+
T Consensus 1 ~~k~l~lDrDgtl~~~~~~----~y----~------------------~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTN 54 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPT----DF----Q------------------VDSLDKLAFEPGVIPALLKLQKAGYKLVMVTN 54 (354)
T ss_pred CCcEEEEeCCCCccCCCCc----cc----c------------------ccCcccceECcCHHHHHHHHHhCCCeEEEEEC
Confidence 4789999999999987420 00 0 0011247899999999999985 599999999
Q ss_pred C
Q 000938 982 G 982 (1218)
Q Consensus 982 G 982 (1218)
.
T Consensus 55 q 55 (354)
T PRK05446 55 Q 55 (354)
T ss_pred C
Confidence 4
No 56
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=92.85 E-value=0.12 Score=53.77 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=59.8
Q ss_pred EEEecCCHHHHHHHHhcc-ceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC
Q 000938 956 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1034 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLSk~-YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD 1034 (1218)
++.+.||+.+||++|.+. +.+.|.|++...++...++.++-.. +|.. ++..++.+. .+.+ +..+.+=++ .+|.+
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f~~-i~~~~~~~~-~KP~-~~~~~~~~~-~~~~~ 166 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FFDA-VITSEEEGV-EKPH-PKIFYAALK-RLGVK 166 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hccE-EEEeccCCC-CCCC-HHHHHHHHH-HcCCC
Confidence 468999999999999865 9999999999999999999887654 7764 565443321 1110 112333343 45665
Q ss_pred -CcEEEEeCCC
Q 000938 1035 -SAVVIIDDSV 1044 (1218)
Q Consensus 1035 -srVVIVDDsp 1044 (1218)
+.+|+|+|++
T Consensus 167 ~~~~~~igDs~ 177 (221)
T TIGR02253 167 PEEAVMVGDRL 177 (221)
T ss_pred hhhEEEECCCh
Confidence 7899999997
No 57
>PRK08238 hypothetical protein; Validated
Probab=92.78 E-value=0.15 Score=61.30 Aligned_cols=91 Identities=21% Similarity=0.279 Sum_probs=56.2
Q ss_pred EEecCCHHHHHHHHh-ccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCCC
Q 000938 957 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMES 1035 (1218)
Q Consensus 957 VKlRPGLdEFLeeLS-k~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRDs 1035 (1218)
..++|++.++|+++. +.+.++|-|++.+.|++++++.+. +|. .++..++..+ ..|. ++..-|...++. .
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lG----lFd-~Vigsd~~~~-~kg~---~K~~~l~~~l~~-~ 140 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLG----LFD-GVFASDGTTN-LKGA---AKAAALVEAFGE-R 140 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC----CCC-EEEeCCCccc-cCCc---hHHHHHHHHhCc-c
Confidence 357899999999986 569999999999999999999885 354 3665443211 1121 111112222332 3
Q ss_pred cEEEEeCCC---CccccCcCCccccc
Q 000938 1036 AVVIIDDSV---RVWPHNKLNLIVVE 1058 (1218)
Q Consensus 1036 rVVIVDDsp---dVW~~qpdN~I~Ik 1058 (1218)
.++.+-|+. ..|.. -+|.+.|.
T Consensus 141 ~~~yvGDS~~Dlp~~~~-A~~av~Vn 165 (479)
T PRK08238 141 GFDYAGNSAADLPVWAA-ARRAIVVG 165 (479)
T ss_pred CeeEecCCHHHHHHHHh-CCCeEEEC
Confidence 466777776 34443 34566554
No 58
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=92.74 E-value=0.03 Score=68.78 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=75.6
Q ss_pred hHHHHHHHhhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHHcCCcEEc
Q 000938 1116 VRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVH 1195 (1218)
Q Consensus 1116 VR~IL~eiRrqILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~gTeKVk~Alk~GIkIVS 1195 (1218)
++....++|..+|.||.|+|-|+ + ..+...+....+.-||++.. =+..|||||.....+.-.-.+......+|.
T Consensus 199 ~~~f~d~hrl~~feg~~~~f~gF-~----~ee~~~m~~sle~~gg~~a~-~d~~cthvvv~e~~~~~~p~~~s~~~~~vk 272 (850)
T KOG3524|consen 199 EPCFVDKHRLGVFEGLSLFFHGF-K----QEEIDDMLRSLENTGGKLAP-SDTLCTHVVVNEDNDEVEPLAVSSNQVHVK 272 (850)
T ss_pred ccchhhhhccccccCCeEeecCC-c----HHHHHHHHHHHHhcCCcccC-CCCCceeEeecCCccccccccccccceeec
Confidence 45567788999999999999996 2 23445677888999999999 667899999987655433345556678999
Q ss_pred HHHHHHHHHhcccCCCCCCCC
Q 000938 1196 PGWVEASALLYRRANEQDFAI 1216 (1218)
Q Consensus 1196 PdWLedCl~~wkRVDEsdYlL 1216 (1218)
.+|.|-++....+.-|.+|++
T Consensus 273 ~ewfw~siq~g~~a~e~~yl~ 293 (850)
T KOG3524|consen 273 KEWFWVSIQRGCCAIEDNYLL 293 (850)
T ss_pred ccceEEEEecchhccccceec
Confidence 999999998888888988875
No 59
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=92.34 E-value=0.17 Score=49.01 Aligned_cols=86 Identities=23% Similarity=0.307 Sum_probs=60.7
Q ss_pred EEEEecCCHHHHHHHHh-ccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCC
Q 000938 955 MWTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM 1033 (1218)
Q Consensus 955 ~YVKlRPGLdEFLeeLS-k~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGR 1033 (1218)
......|++.+||+.+. +.|.++|+|++...++..+++.+.-. .+|.. ++..++... .+.+ +..+.+=+. -+|.
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~~-i~~~~~~~~-~Kp~-~~~~~~~~~-~~~~ 148 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFDE-IISSDDVGS-RKPD-PDAYRRALE-KLGI 148 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCSE-EEEGGGSSS-STTS-HHHHHHHHH-HHTS
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-ccccc-ccccchhhh-hhhH-HHHHHHHHH-HcCC
Confidence 35889999999999999 88999999999999999999988655 46764 665543321 1110 001222222 3465
Q ss_pred C-CcEEEEeCCCC
Q 000938 1034 E-SAVVIIDDSVR 1045 (1218)
Q Consensus 1034 D-srVVIVDDspd 1045 (1218)
. +.+|.|||++.
T Consensus 149 ~p~~~~~vgD~~~ 161 (176)
T PF13419_consen 149 PPEEILFVGDSPS 161 (176)
T ss_dssp SGGGEEEEESSHH
T ss_pred CcceEEEEeCCHH
Confidence 5 88999999973
No 60
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=92.01 E-value=0.38 Score=48.65 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=38.1
Q ss_pred EecCCHHHHHHHH-hccceEEEEcCCcHHHHH------------HHHHHHcCCCceeeeeeeec
Q 000938 958 KLRPGIWTFLERA-SKLFEMHLYTMGNKLYAT------------EMAKVLDPKGVLFAGRVISR 1008 (1218)
Q Consensus 958 KlRPGLdEFLeeL-Sk~YEIVIFTAGtreYAd------------~VLdiLDP~g~LF~~RIySR 1008 (1218)
...+.+.+.|+++ .+.++|++.|+-...+.. .++++|+..+.-| +.|+-|
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipY-d~l~~~ 86 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPY-DEIYVG 86 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCC-ceEEeC
Confidence 4678888889988 568999999998888876 7888998877444 345544
No 61
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=91.03 E-value=0.32 Score=50.25 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=60.0
Q ss_pred EEEecCCHHHHHHHHhccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCccccccccc-CCC
Q 000938 956 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL-GME 1034 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLSk~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVL-GRD 1034 (1218)
.+.++||+.++|+++.+.|.++|-|++...++..+++.+.-.+ +|.. +++.++... .+.+ +..+.+=+. .+ |..
T Consensus 95 ~~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~fd~-i~~~~~~~~-~KP~-~~~~~~~~~-~~~~~~ 169 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FFDD-IFVSEDAGI-QKPD-KEIFNYALE-RMPKFS 169 (224)
T ss_pred cCeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hcCE-EEEcCccCC-CCCC-HHHHHHHHH-HhcCCC
Confidence 3689999999999998779999999999999999998876554 6764 665443321 1211 112333344 45 655
Q ss_pred -CcEEEEeCCC
Q 000938 1035 -SAVVIIDDSV 1044 (1218)
Q Consensus 1035 -srVVIVDDsp 1044 (1218)
+.+|+|+|++
T Consensus 170 ~~~~v~igD~~ 180 (224)
T TIGR02254 170 KEEVLMIGDSL 180 (224)
T ss_pred chheEEECCCc
Confidence 7899999986
No 62
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=90.94 E-value=0.55 Score=57.27 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=66.8
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhc-cceEEEE
Q 000938 901 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLY 979 (1218)
Q Consensus 901 s~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk-~YEIVIF 979 (1218)
..+.+++.||||+|||.+.....+ +. .+. . |..+-||+.+.|++|.+ .|.|+|+
T Consensus 165 ~~~~Kia~fD~DGTLi~t~sg~~~-~~--------------~~~---------d-~~~l~pgV~e~L~~L~~~Gy~IvIv 219 (526)
T TIGR01663 165 KGQEKIAGFDLDGTIIKTKSGKVF-PK--------------GPD---------D-WQIIFPEIPEKLKELEADGFKICIF 219 (526)
T ss_pred CccCcEEEEECCCCccccCCCccC-CC--------------CHH---------H-eeecccCHHHHHHHHHHCCCEEEEE
Confidence 356789999999999976421000 00 000 0 33356999999999985 5999999
Q ss_pred cCCcH------------HHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCC-CCC-CcccccccccCCC-CcEEEEeCCC
Q 000938 980 TMGNK------------LYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGD-ERV-PKSKDLEGVLGME-SAVVIIDDSV 1044 (1218)
Q Consensus 980 TAGtr------------eYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~-Er~-~yiKDLsrVLGRD-srVVIVDDsp 1044 (1218)
|+... .++..|++.|+- .|. -+++.++| .+.+.. +.. ...+++..-++.+ +..++|-|..
T Consensus 220 TNQ~gI~~G~~~~~~~~~ki~~iL~~lgi---pfd-viia~~~~-~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 220 TNQGGIARGKINADDFKAKIEAIVAKLGV---PFQ-VFIAIGAG-FYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAA 294 (526)
T ss_pred ECCcccccCcccHHHHHHHHHHHHHHcCC---ceE-EEEeCCCC-CCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence 99776 467777877763 354 35544332 222210 000 0112221111345 7899999987
No 63
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=90.82 E-value=0.34 Score=49.98 Aligned_cols=97 Identities=18% Similarity=0.106 Sum_probs=64.0
Q ss_pred EEEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC
Q 000938 956 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1034 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD 1034 (1218)
.+.++||+.++|+.+.+ .|.++|.|++.+.++..+++.++=.+ +|. .+++.++... .++ .+..+.+-+. .+|..
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~~-~Kp-~p~~~~~~~~-~~~~~ 157 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YFS-VLIGGDSLAQ-RKP-HPDPLLLAAE-RLGVA 157 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hCc-EEEecCCCCC-CCC-ChHHHHHHHH-HcCCC
Confidence 36789999999999975 59999999999999999999887654 665 3665443211 111 0111233333 35665
Q ss_pred -CcEEEEeCCCCccccCcCCcccc
Q 000938 1035 -SAVVIIDDSVRVWPHNKLNLIVV 1057 (1218)
Q Consensus 1035 -srVVIVDDspdVW~~qpdN~I~I 1057 (1218)
+.+++|+|+..-...-...++.+
T Consensus 158 ~~~~~~igDs~~d~~aa~~aG~~~ 181 (213)
T TIGR01449 158 PQQMVYVGDSRVDIQAARAAGCPS 181 (213)
T ss_pred hhHeEEeCCCHHHHHHHHHCCCeE
Confidence 78999999975553323344443
No 64
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=90.59 E-value=0.42 Score=49.40 Aligned_cols=53 Identities=25% Similarity=0.379 Sum_probs=34.1
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhc-cceEEEEcCC
Q 000938 905 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG 982 (1218)
Q Consensus 905 LTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk-~YEIVIFTAG 982 (1218)
+++.+|||+|||........ . .+ +. =|..+-|++-+-|+++.+ -|.|+|+|+.
T Consensus 1 Kia~fD~DgTLi~~~s~~~f--------~----~~---~~----------D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKF--------P----KD---PD----------DWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-------------SS---TC----------GGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred CEEEEeCCCCccCCCCCCcC--------c----CC---HH----------HhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 46899999999988532100 0 00 10 045577899999999875 7999999986
No 65
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=90.17 E-value=0.4 Score=47.81 Aligned_cols=83 Identities=27% Similarity=0.252 Sum_probs=53.8
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD- 1034 (1218)
+.+.||+.+||+.+.+ .|.++|.|++...+ ..++..++-.. +|.. ++..++... .+.+ +..+.+=+ +.+|.+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f~~-i~~~~~~~~-~KP~-~~~~~~~~-~~~~~~~ 157 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LFDV-VIFSGDVGR-GKPD-PDIYLLAL-KKLGLKP 157 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HCCE-EEEcCCCCC-CCCC-HHHHHHHH-HHcCCCc
Confidence 6789999999999975 69999999999999 66665565544 5664 443332221 1110 11122222 235665
Q ss_pred CcEEEEeCCCC
Q 000938 1035 SAVVIIDDSVR 1045 (1218)
Q Consensus 1035 srVVIVDDspd 1045 (1218)
+.+|+|||++.
T Consensus 158 ~~~~~vgD~~~ 168 (183)
T TIGR01509 158 EECLFVDDSPA 168 (183)
T ss_pred ceEEEEcCCHH
Confidence 88999999974
No 66
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=90.13 E-value=0.62 Score=48.05 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=60.8
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhcc-ceEEEEc
Q 000938 902 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYT 980 (1218)
Q Consensus 902 ~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~-YEIVIFT 980 (1218)
..-..||+|+|+||..... ...-|++.++|++|.+. +.++|.|
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~------------------------------------~~~~pgv~e~L~~Lk~~g~~l~I~S 66 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH------------------------------------NEAYPALRDWIEELKAAGRKLLIVS 66 (170)
T ss_pred CCCCEEEEecCCccccCCC------------------------------------CCcChhHHHHHHHHHHcCCEEEEEe
Confidence 4667899999999985421 12458999999999865 9999999
Q ss_pred CCc-HHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEeCCC
Q 000938 981 MGN-KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSV 1044 (1218)
Q Consensus 981 AGt-reYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-srVVIVDDsp 1044 (1218)
++. ..++..+++.++-. .+. . +. +.. + ...+.+-+-+|.. +.+++|+|+.
T Consensus 67 n~~~~~~~~~~~~~~gl~-------~~~-~-~~---KP~-p-~~~~~~l~~~~~~~~~~l~IGDs~ 118 (170)
T TIGR01668 67 NNAGEQRAKAVEKALGIP-------VLP-H-AV---KPP-G-CAFRRAHPEMGLTSEQVAVVGDRL 118 (170)
T ss_pred CCchHHHHHHHHHHcCCE-------EEc-C-CC---CCC-h-HHHHHHHHHcCCCHHHEEEECCcc
Confidence 999 67777777766522 111 1 11 110 0 1122222234655 7899999996
No 67
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=89.68 E-value=0.46 Score=51.45 Aligned_cols=97 Identities=20% Similarity=0.153 Sum_probs=65.6
Q ss_pred EEEecCCHHHHHHHHh-ccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC
Q 000938 956 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1034 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLS-k~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD 1034 (1218)
.+.+.||+.++|++|. +.|.+.|-|++.+.++..+++.++-.. +|.. ++..+++.. .+.+ +..+.+=+. .+|..
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~-iv~~~~~~~-~KP~-p~~~~~a~~-~~~~~ 180 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FFQA-VIIGSECEH-AKPH-PDPYLKALE-VLKVS 180 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hCcE-EEecCcCCC-CCCC-hHHHHHHHH-HhCCC
Confidence 3667899999999996 569999999999999999999988664 7765 665554322 1211 112334444 35655
Q ss_pred -CcEEEEeCCCCccccCcCCcccc
Q 000938 1035 -SAVVIIDDSVRVWPHNKLNLIVV 1057 (1218)
Q Consensus 1035 -srVVIVDDspdVW~~qpdN~I~I 1057 (1218)
+.+|+|+|++.-...-...++.+
T Consensus 181 ~~~~l~vgDs~~Di~aA~~aGi~~ 204 (248)
T PLN02770 181 KDHTFVFEDSVSGIKAGVAAGMPV 204 (248)
T ss_pred hhHEEEEcCCHHHHHHHHHCCCEE
Confidence 78999999984333223445543
No 68
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=89.41 E-value=0.46 Score=48.89 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=57.4
Q ss_pred EEecCCHHHHHHHHhcc-ceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-
Q 000938 957 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk~-YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD- 1034 (1218)
+...||+.++|+.+.+. |.++|.|++...++..+++.+.-. .+|.. +++.++.. ..+.+ +..|.+=++ .+|..
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~fd~-i~~s~~~~-~~KP~-~~~~~~~~~-~~~~~p 165 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPFDA-VLSADAVR-AYKPA-PQVYQLALE-ALGVPP 165 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhhhe-eEehhhcC-CCCCC-HHHHHHHHH-HhCCCh
Confidence 56789999999999986 999999999999999999887533 36764 66544322 11111 111222222 35655
Q ss_pred CcEEEEeCCCC
Q 000938 1035 SAVVIIDDSVR 1045 (1218)
Q Consensus 1035 srVVIVDDspd 1045 (1218)
+.+|+|+|++.
T Consensus 166 ~~~~~vgD~~~ 176 (198)
T TIGR01428 166 DEVLFVASNPW 176 (198)
T ss_pred hhEEEEeCCHH
Confidence 88999999973
No 69
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=89.36 E-value=0.75 Score=48.04 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=63.5
Q ss_pred EEEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC
Q 000938 956 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1034 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD 1034 (1218)
.+.+.||+.++|+.+.+ .+.++|.|++.+.++..+++.++=.. +|.. ++..+++.. .+. .+..+.+-+. -++..
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f~~-i~~~~~~~~-~Kp-~p~~~~~~~~-~~~~~ 154 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FFDV-VITLDDVEH-AKP-DPEPVLKALE-LLGAK 154 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-ceeE-EEecCcCCC-CCC-CcHHHHHHHH-HcCCC
Confidence 36788999999999975 69999999999999999999987654 7764 666543321 111 0111223233 34555
Q ss_pred -CcEEEEeCCCCccccCcCCcc
Q 000938 1035 -SAVVIIDDSVRVWPHNKLNLI 1055 (1218)
Q Consensus 1035 -srVVIVDDspdVW~~qpdN~I 1055 (1218)
+++|+|+|++.-...-...++
T Consensus 155 ~~~~~~iGDs~~Di~aa~~aG~ 176 (214)
T PRK13288 155 PEEALMVGDNHHDILAGKNAGT 176 (214)
T ss_pred HHHEEEECCCHHHHHHHHHCCC
Confidence 889999999754432223444
No 70
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=89.21 E-value=0.69 Score=48.03 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=58.8
Q ss_pred EEEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC
Q 000938 956 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1034 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD 1034 (1218)
.+..+||+.+||+.+.+ .+.++|.|++...++..+++.++-.. +|. .+++.++.. ..+. .+..+.+ +...++..
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~-~~kp-~~~~~~~-~~~~~~~~ 165 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YFS-VVIGGDSLP-NKKP-DPAPLLL-ACEKLGLD 165 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-Ccc-EEEcCCCCC-CCCc-ChHHHHH-HHHHcCCC
Confidence 36789999999999985 69999999999999999999887554 564 366543221 1111 0001122 22245555
Q ss_pred -CcEEEEeCCCCcc
Q 000938 1035 -SAVVIIDDSVRVW 1047 (1218)
Q Consensus 1035 -srVVIVDDspdVW 1047 (1218)
+.+|+|+|+..-.
T Consensus 166 ~~~~i~igD~~~Di 179 (226)
T PRK13222 166 PEEMLFVGDSRNDI 179 (226)
T ss_pred hhheEEECCCHHHH
Confidence 8899999997544
No 71
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=89.14 E-value=0.68 Score=48.01 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=64.2
Q ss_pred EEEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC
Q 000938 956 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1034 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD 1034 (1218)
.+.+.||+.++|+++.+ .|.++|.|++...++..+++.++-.+ +|.. ++..+++. ..+.. +..+ +.+...+|.+
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~~-i~~~~~~~-~~KP~-~~~~-~~~~~~~~~~ 147 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LFDH-VIGSDEVP-RPKPA-PDIV-REALRLLDVP 147 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-heee-EEecCcCC-CCCCC-hHHH-HHHHHHcCCC
Confidence 36788999999999975 69999999999999999999888765 6764 66554332 11110 1111 2222235655
Q ss_pred -CcEEEEeCCCCccccCcCCcccc
Q 000938 1035 -SAVVIIDDSVRVWPHNKLNLIVV 1057 (1218)
Q Consensus 1035 -srVVIVDDspdVW~~qpdN~I~I 1057 (1218)
+.+|+|+|+..-...-...++.+
T Consensus 148 ~~~~l~igD~~~Di~aA~~~Gi~~ 171 (205)
T TIGR01454 148 PEDAVMVGDAVTDLASARAAGTAT 171 (205)
T ss_pred hhheEEEcCCHHHHHHHHHcCCeE
Confidence 78999999975443223445543
No 72
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=88.45 E-value=0.55 Score=51.92 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=61.2
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD- 1034 (1218)
+.+.||+.++|+.|.+ .|-++|.|++.+.|+..+++.++-.. +|.. +++.+++. ..+.. +..+.+=+. .+|..
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~-ii~~~d~~-~~KP~-Pe~~~~a~~-~l~~~p 182 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FFSV-VLAAEDVY-RGKPD-PEMFMYAAE-RLGFIP 182 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hCcE-EEecccCC-CCCCC-HHHHHHHHH-HhCCCh
Confidence 5679999999999985 59999999999999999999887544 6765 66554432 11211 112334444 45665
Q ss_pred CcEEEEeCCCCcc
Q 000938 1035 SAVVIIDDSVRVW 1047 (1218)
Q Consensus 1035 srVVIVDDspdVW 1047 (1218)
+.+|+|+|+..-.
T Consensus 183 ~~~l~IgDs~~Di 195 (260)
T PLN03243 183 ERCIVFGNSNSSV 195 (260)
T ss_pred HHeEEEcCCHHHH
Confidence 8899999997544
No 73
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=87.99 E-value=0.42 Score=48.75 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=56.0
Q ss_pred EEecCCHHHHHHHHhccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCC---CCCCCCCCcccccccccCC
Q 000938 957 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDP---FDGDERVPKSKDLEGVLGM 1033 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~---~dG~Er~~yiKDLsrVLGR 1033 (1218)
++..||+.++|++|. +.++|.|++.+.++..+++.++-.. +|.. ++..++.... .+. .+..+.+=+. .+|.
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~fd~-i~~~~~~~~~~~~~KP-~p~~~~~~~~-~~~~ 156 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CFDG-IFCFDTANPDYLLPKP-SPQAYEKALR-EAGV 156 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hhCe-EEEeecccCccCCCCC-CHHHHHHHHH-HhCC
Confidence 456799999999997 7899999999999999999886543 7765 6654332110 111 1112223333 3465
Q ss_pred C-CcEEEEeCCCC
Q 000938 1034 E-SAVVIIDDSVR 1045 (1218)
Q Consensus 1034 D-srVVIVDDspd 1045 (1218)
+ +.+++|+|++.
T Consensus 157 ~~~~~l~vgD~~~ 169 (184)
T TIGR01993 157 DPERAIFFDDSAR 169 (184)
T ss_pred CccceEEEeCCHH
Confidence 5 78999999863
No 74
>PRK06769 hypothetical protein; Validated
Probab=87.90 E-value=1.2 Score=46.23 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=24.0
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcH
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNK 984 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtr 984 (1218)
+.+-||+.++|++|.+ .|.+.|.|+...
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCch
Confidence 4567999999999975 699999999875
No 75
>PRK09449 dUMP phosphatase; Provisional
Probab=87.60 E-value=0.71 Score=48.33 Aligned_cols=83 Identities=18% Similarity=0.171 Sum_probs=58.7
Q ss_pred EEecCCHHHHHHHHhccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCC-C-
Q 000938 957 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-E- 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGR-D- 1034 (1218)
+...||+.++|+.|.+.|.+.|.|++...++..+++.+.-.+ +|.. ++..++... .+++ +..+.+-+. -+|. +
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~-v~~~~~~~~-~KP~-p~~~~~~~~-~~~~~~~ 168 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YFDL-LVISEQVGV-AKPD-VAIFDYALE-QMGNPDR 168 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-HcCE-EEEECccCC-CCCC-HHHHHHHHH-HcCCCCc
Confidence 568999999999999889999999999999999998876554 6754 665443321 2221 112333344 3553 4
Q ss_pred CcEEEEeCCC
Q 000938 1035 SAVVIIDDSV 1044 (1218)
Q Consensus 1035 srVVIVDDsp 1044 (1218)
+.+|+|+|++
T Consensus 169 ~~~~~vgD~~ 178 (224)
T PRK09449 169 SRVLMVGDNL 178 (224)
T ss_pred ccEEEEcCCc
Confidence 6799999996
No 76
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=87.46 E-value=0.83 Score=49.10 Aligned_cols=96 Identities=14% Similarity=0.019 Sum_probs=63.9
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCC--
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-- 1033 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGR-- 1033 (1218)
+.+.||+.++|+.|.+ .+.+.|-|++.+.+++.+++.+.-.+ +|-+.+++.++.. ..++ .+..+.+-+. .+|.
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~d~ii~~~~~~-~~KP-~p~~~~~a~~-~l~~~~ 173 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YRPDYNVTTDDVP-AGRP-APWMALKNAI-ELGVYD 173 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CCCceEEccccCC-CCCC-CHHHHHHHHH-HcCCCC
Confidence 5788999999999975 59999999999999999999887665 4434577655421 1121 1112334444 3564
Q ss_pred CCcEEEEeCCCCccccCcCCccc
Q 000938 1034 ESAVVIIDDSVRVWPHNKLNLIV 1056 (1218)
Q Consensus 1034 DsrVVIVDDspdVW~~qpdN~I~ 1056 (1218)
.+.+|+|.|++.-...-...++.
T Consensus 174 ~~~~l~IGDs~~Di~aA~~aGi~ 196 (253)
T TIGR01422 174 VAACVKVGDTVPDIEEGRNAGMW 196 (253)
T ss_pred chheEEECCcHHHHHHHHHCCCe
Confidence 37899999997544322234443
No 77
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=87.11 E-value=0.95 Score=46.05 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=42.7
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeee
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 1007 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIyS 1007 (1218)
+.++||+.++|+.+.+ -+.++|.|++...++..+++.+.... +|...+..
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~~~~~~~ 129 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VYSNELVF 129 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EEEEEEEE
Confidence 6789999999999974 69999999999999999999987654 67665554
No 78
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=87.04 E-value=0.45 Score=49.79 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=61.8
Q ss_pred EEEecCCHHHHHHHHhccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-
Q 000938 956 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1034 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLSk~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD- 1034 (1218)
.+...||+.+||+.+. +.++|.|++.+.+++.+++.++-.. +|...+++.++... .+.+ +..+.+=+. .+|..
T Consensus 86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F~~~v~~~~~~~~-~KP~-p~~~~~a~~-~~~~~p 159 (221)
T PRK10563 86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YFPDKLFSGYDIQR-WKPD-PALMFHAAE-AMNVNV 159 (221)
T ss_pred cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hCcceEeeHHhcCC-CCCC-hHHHHHHHH-HcCCCH
Confidence 3577899999999994 8999999999999999998776544 66544665433221 1110 111222233 34555
Q ss_pred CcEEEEeCCCCccccCcCCcccc
Q 000938 1035 SAVVIIDDSVRVWPHNKLNLIVV 1057 (1218)
Q Consensus 1035 srVVIVDDspdVW~~qpdN~I~I 1057 (1218)
+.+|+|+|++.-...-..-++.+
T Consensus 160 ~~~l~igDs~~di~aA~~aG~~~ 182 (221)
T PRK10563 160 ENCILVDDSSAGAQSGIAAGMEV 182 (221)
T ss_pred HHeEEEeCcHhhHHHHHHCCCEE
Confidence 78999999986554323344443
No 79
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=86.12 E-value=1.1 Score=46.64 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=41.1
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeee
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRV 1005 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RI 1005 (1218)
+.++||+.+||+.+.+ .+.++|.|++...++..+++.+.-.. +|..++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~ 132 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRL 132 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEE
Confidence 5689999999999986 69999999999999999999876554 666544
No 80
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=86.06 E-value=1.3 Score=47.29 Aligned_cols=115 Identities=19% Similarity=0.283 Sum_probs=75.9
Q ss_pred hhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhcc-ce
Q 000938 897 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FE 975 (1218)
Q Consensus 897 ~rLLs~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~-YE 975 (1218)
..|..+.-.++|||||+|||-=.. | ..-|-+++.|.++.+. --
T Consensus 21 ~~L~~~Gikgvi~DlDNTLv~wd~-----~-------------------------------~~tpe~~~W~~e~k~~gi~ 64 (175)
T COG2179 21 DILKAHGIKGVILDLDNTLVPWDN-----P-------------------------------DATPELRAWLAELKEAGIK 64 (175)
T ss_pred HHHHHcCCcEEEEeccCceecccC-----C-------------------------------CCCHHHHHHHHHHHhcCCE
Confidence 567778999999999999994321 1 1346778888888865 88
Q ss_pred EEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEeCCC--CccccCcC
Q 000938 976 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSV--RVWPHNKL 1052 (1218)
Q Consensus 976 IVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-srVVIVDDsp--dVW~~qpd 1052 (1218)
++|.++.++.-+..++..||-.- |++- ...+. ..+-|-|. .++.+ +.||+|-|+- ++...|..
T Consensus 65 v~vvSNn~e~RV~~~~~~l~v~f------i~~A---~KP~~----~~fr~Al~-~m~l~~~~vvmVGDqL~TDVlggnr~ 130 (175)
T COG2179 65 VVVVSNNKESRVARAAEKLGVPF------IYRA---KKPFG----RAFRRALK-EMNLPPEEVVMVGDQLFTDVLGGNRA 130 (175)
T ss_pred EEEEeCCCHHHHHhhhhhcCCce------eecc---cCccH----HHHHHHHH-HcCCChhHEEEEcchhhhhhhccccc
Confidence 99999999999999999888553 2221 11000 01223333 34555 7899999986 46655432
Q ss_pred --Ccccccccc
Q 000938 1053 --NLIVVERYT 1061 (1218)
Q Consensus 1053 --N~I~IkPY~ 1061 (1218)
..|.|+|-.
T Consensus 131 G~~tIlV~Pl~ 141 (175)
T COG2179 131 GMRTILVEPLV 141 (175)
T ss_pred CcEEEEEEEec
Confidence 356666653
No 81
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=85.95 E-value=1.5 Score=48.15 Aligned_cols=57 Identities=21% Similarity=0.096 Sum_probs=44.9
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhcc-ceEEEEcCC
Q 000938 904 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMG 982 (1218)
Q Consensus 904 KLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~-YEIVIFTAG 982 (1218)
.+.|++||||||+.... ...|...+.|+++.+. +.++|.|.-
T Consensus 4 ~kli~~DlDGTLl~~~~-------------------------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR 46 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-------------------------------------YSYEPAKPALKALKEKGIPVIPCTSK 46 (273)
T ss_pred ceEEEEcCcccCcCCCC-------------------------------------cCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 56899999999996521 1235677888888764 899999999
Q ss_pred cHHHHHHHHHHHcCC
Q 000938 983 NKLYATEMAKVLDPK 997 (1218)
Q Consensus 983 treYAd~VLdiLDP~ 997 (1218)
...++..+++.|+-.
T Consensus 47 ~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 47 TAAEVEVLRKELGLE 61 (273)
T ss_pred CHHHHHHHHHHcCCC
Confidence 999999999988744
No 82
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=85.58 E-value=1.5 Score=42.15 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=24.6
Q ss_pred CCHHHHHHHHhcc-ceEEEEcCCcHHHHHHHHHHH
Q 000938 961 PGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVL 994 (1218)
Q Consensus 961 PGLdEFLeeLSk~-YEIVIFTAGtreYAd~VLdiL 994 (1218)
||..+||+.|.+. ..+++.|+.+..-...+++.|
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 8999999999875 999999999844444444433
No 83
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=85.23 E-value=3.2 Score=46.02 Aligned_cols=116 Identities=14% Similarity=0.068 Sum_probs=69.3
Q ss_pred ccCCchHHHHHHhHHHHHhhHHhhhhhcCCCeEEEEeCCCceeecccC------C--CCCCc-hhhhhhhhcccccCCCc
Q 000938 874 FEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKF------H--EVDPV-HDEILRKKEEQDREKPH 944 (1218)
Q Consensus 874 ~~G~~~~q~a~I~ke~akrL~~q~rLLs~kKLTLVLDLDETLIHSs~~------~--evdP~-~dEil~~~Ee~D~~~P~ 944 (1218)
..|-+.......-.+++.....+..+-..+|..+|||+|||++..... . ..++. .++|+..
T Consensus 47 ~~~~~Y~~D~~~v~~~a~~y~~~~~~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~---------- 116 (229)
T TIGR01675 47 MTSKQYKRDVKRVVDEAYFYAKSLALSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGK---------- 116 (229)
T ss_pred hcccccHHHHHHHHHHHHHHHHHhhccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHc----------
Confidence 345454433333334555555554455679999999999999976520 0 01110 1112110
Q ss_pred ceeeeeccceEEEEecCCHHHHHHHHh-ccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecC
Q 000938 945 RHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1009 (1218)
Q Consensus 945 ~~lF~~~~~~~YVKlRPGLdEFLeeLS-k~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRD 1009 (1218)
. =...-|+..+|++.+. +-++|++.|.-........++.|.-.|--.-.+++-|.
T Consensus 117 --------~--~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~ 172 (229)
T TIGR01675 117 --------G--AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRG 172 (229)
T ss_pred --------C--CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecC
Confidence 0 0235689999999985 57999999999988877777777655521113555553
No 84
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=84.94 E-value=1.6 Score=47.19 Aligned_cols=67 Identities=16% Similarity=0.090 Sum_probs=48.4
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhc-cceEEEEcC
Q 000938 903 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM 981 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk-~YEIVIFTA 981 (1218)
+-..+++|+|+||.+.. ..-||+.++|++|.+ .+.++|.|+
T Consensus 7 ~~~~~~~D~dG~l~~~~--------------------------------------~~~pga~e~L~~L~~~G~~~~ivTN 48 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGN--------------------------------------HTYPGAVQNLNKIIAQGKPVYFVSN 48 (242)
T ss_pred cCCEEEEecccccccCC--------------------------------------ccCccHHHHHHHHHHCCCEEEEEeC
Confidence 34578999999998653 135999999999985 689999999
Q ss_pred CcHHHHH--HHHHHHcCCCceeeeeeeec
Q 000938 982 GNKLYAT--EMAKVLDPKGVLFAGRVISR 1008 (1218)
Q Consensus 982 GtreYAd--~VLdiLDP~g~LF~~RIySR 1008 (1218)
+.+.++. +.++.+.-...+|.. |++.
T Consensus 49 ~~~~~~~~~~~L~~~gl~~~~~~~-Ii~s 76 (242)
T TIGR01459 49 SPRNIFSLHKTLKSLGINADLPEM-IISS 76 (242)
T ss_pred CCCChHHHHHHHHHCCCCccccce-EEcc
Confidence 9988776 566666544214443 5543
No 85
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=84.63 E-value=2.1 Score=43.00 Aligned_cols=49 Identities=16% Similarity=0.355 Sum_probs=40.2
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeee
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 1007 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIyS 1007 (1218)
+.++||+.++|+.+.+ .+.++|.|++...+++.+++.++-.. +|.. +++
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-i~~ 120 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKD-VFIE-IYS 120 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChh-heeE-Eec
Confidence 6899999999999975 59999999999999999998876433 5543 443
No 86
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=84.27 E-value=1.3 Score=46.70 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=62.9
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD- 1034 (1218)
+.+.||+.++|+.+.+ .|.++|.|++.+.+++.+++.+.-.+ +|.. +++.++.. ..+++ +..+..=+. .+|..
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-~~~~~~~~-~~Kp~-~~~~~~~~~-~~~~~~ 165 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YFDA-LASAEKLP-YSKPH-PEVYLNCAA-KLGVDP 165 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-cccE-EEEcccCC-CCCCC-HHHHHHHHH-HcCCCH
Confidence 5678999999999975 59999999999999999999877554 6764 66554321 11110 112222233 35666
Q ss_pred CcEEEEeCCCCccccCcCCcc
Q 000938 1035 SAVVIIDDSVRVWPHNKLNLI 1055 (1218)
Q Consensus 1035 srVVIVDDspdVW~~qpdN~I 1055 (1218)
+.+|+|+|+..-...-...++
T Consensus 166 ~~~~~igDs~~Di~aA~~aG~ 186 (222)
T PRK10826 166 LTCVALEDSFNGMIAAKAARM 186 (222)
T ss_pred HHeEEEcCChhhHHHHHHcCC
Confidence 889999999865543333343
No 87
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=84.02 E-value=1.8 Score=46.26 Aligned_cols=87 Identities=17% Similarity=0.084 Sum_probs=59.4
Q ss_pred EEEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC
Q 000938 956 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1034 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD 1034 (1218)
++.+.||+.++|+.|.+ .+.+.|.|++...++..+++.++-.. +|. .+++.+++. ..+.+ +..+.+-++ .+|..
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f~-~i~~~~~~~-~~KP~-p~~~~~~~~-~l~~~ 167 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RCA-VLIGGDTLA-ERKPH-PLPLLVAAE-RIGVA 167 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-ccc-EEEecCcCC-CCCCC-HHHHHHHHH-HhCCC
Confidence 46889999999999976 48999999999999999998876544 564 355544321 11111 112333333 45665
Q ss_pred -CcEEEEeCCCCcc
Q 000938 1035 -SAVVIIDDSVRVW 1047 (1218)
Q Consensus 1035 -srVVIVDDspdVW 1047 (1218)
+.+|+|+|++.-.
T Consensus 168 p~~~l~IGDs~~Di 181 (229)
T PRK13226 168 PTDCVYVGDDERDI 181 (229)
T ss_pred hhhEEEeCCCHHHH
Confidence 8899999997544
No 88
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=83.77 E-value=1.3 Score=45.60 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=27.1
Q ss_pred CCHHHHHHHHh-ccceEEEEcCCcHHHHHHHHHHHc
Q 000938 961 PGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLD 995 (1218)
Q Consensus 961 PGLdEFLeeLS-k~YEIVIFTAGtreYAd~VLdiLD 995 (1218)
|...+.|+++. +.+.++|.|.-....+..+++.+.
T Consensus 18 ~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 53 (254)
T PF08282_consen 18 PETIEALKELQEKGIKLVIATGRSYSSIKRLLKELG 53 (254)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcccceEEEEEccCccccccccccccc
Confidence 44556777766 678999999999999888888654
No 89
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=83.71 E-value=2 Score=45.50 Aligned_cols=51 Identities=10% Similarity=0.186 Sum_probs=41.9
Q ss_pred EEEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeee
Q 000938 956 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 1006 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIy 1006 (1218)
.+.+|||+.+||+.+.+ .+.++|.|++...|++.+++.+.+...++.+++.
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~ 119 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEAD 119 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeE
Confidence 47899999999999987 5999999999999999999988654445554433
No 90
>PTZ00445 p36-lilke protein; Provisional
Probab=83.31 E-value=2.3 Score=47.06 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=46.2
Q ss_pred hhcCCCeEEEEeCCCceee--cccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhc-cce
Q 000938 899 MFSARKLCLVLDLDHTLLN--SAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFE 975 (1218)
Q Consensus 899 LLs~kKLTLVLDLDETLIH--Ss~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk-~YE 975 (1218)
|...+=+.+++|||.|||- |.. ..+|.. | ...+.-..||.+..++++|.+ .+-
T Consensus 38 L~~~GIk~Va~D~DnTlI~~HsgG--~~~~~~----------~------------~~~~~~~~tpefk~~~~~l~~~~I~ 93 (219)
T PTZ00445 38 LNECGIKVIASDFDLTMITKHSGG--YIDPDN----------D------------DIRVLTSVTPDFKILGKRLKNSNIK 93 (219)
T ss_pred HHHcCCeEEEecchhhhhhhhccc--ccCCCc----------c------------hhhhhccCCHHHHHHHHHHHHCCCe
Confidence 5567888999999999984 432 122210 0 012346689999999999974 799
Q ss_pred EEEEcCCcHHH
Q 000938 976 MHLYTMGNKLY 986 (1218)
Q Consensus 976 IVIFTAGtreY 986 (1218)
|+|-|-+.+.-
T Consensus 94 v~VVTfSd~~~ 104 (219)
T PTZ00445 94 ISVVTFSDKEL 104 (219)
T ss_pred EEEEEccchhh
Confidence 99999998865
No 91
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=83.20 E-value=1.1 Score=48.12 Aligned_cols=94 Identities=17% Similarity=0.032 Sum_probs=61.6
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD- 1034 (1218)
+.+.||+.++|+.+.+ .|.+.|-|++.+.++..+++.+.-.. +|.. +++-++... .+. ++..|.+=+. .+|.+
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~-iv~s~~~~~-~KP-~p~~~~~~~~-~~~~~p 166 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDA-HLDL-LLSTHTFGY-PKE-DQRLWQAVAE-HTGLKA 166 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHH-HCCE-EEEeeeCCC-CCC-CHHHHHHHHH-HcCCCh
Confidence 6788999999999986 59999999999999999988765433 6765 554332211 111 0111233333 35665
Q ss_pred CcEEEEeCCCCccccCcCCcc
Q 000938 1035 SAVVIIDDSVRVWPHNKLNLI 1055 (1218)
Q Consensus 1035 srVVIVDDspdVW~~qpdN~I 1055 (1218)
+.+|+|+|++.-...-...++
T Consensus 167 ~~~l~igDs~~di~aA~~aG~ 187 (224)
T PRK14988 167 ERTLFIDDSEPILDAAAQFGI 187 (224)
T ss_pred HHEEEEcCCHHHHHHHHHcCC
Confidence 889999999854432233444
No 92
>PRK11587 putative phosphatase; Provisional
Probab=83.19 E-value=1.9 Score=45.41 Aligned_cols=86 Identities=14% Similarity=0.053 Sum_probs=57.6
Q ss_pred EEEecCCHHHHHHHHh-ccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC
Q 000938 956 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1034 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLS-k~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD 1034 (1218)
.+.+.||+.+||+.|. +.|.+.|-|++...++..+++.+.- . +|. -+++.++.. ..++ ++..+.+-+. .+|..
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~-~~~-~i~~~~~~~-~~KP-~p~~~~~~~~-~~g~~ 154 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-P-APE-VFVTAERVK-RGKP-EPDAYLLGAQ-LLGLA 154 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-C-Ccc-EEEEHHHhc-CCCC-CcHHHHHHHH-HcCCC
Confidence 3678999999999997 5699999999999988777775543 2 343 355544322 1122 1223444444 35665
Q ss_pred -CcEEEEeCCCCcc
Q 000938 1035 -SAVVIIDDSVRVW 1047 (1218)
Q Consensus 1035 -srVVIVDDspdVW 1047 (1218)
+.+|+|+|++.-.
T Consensus 155 p~~~l~igDs~~di 168 (218)
T PRK11587 155 PQECVVVEDAPAGV 168 (218)
T ss_pred cccEEEEecchhhh
Confidence 8899999998544
No 93
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=82.87 E-value=2.7 Score=45.42 Aligned_cols=59 Identities=29% Similarity=0.223 Sum_probs=48.2
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHH-hccceEEEEcC
Q 000938 903 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERA-SKLFEMHLYTM 981 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeL-Sk~YEIVIFTA 981 (1218)
..+.|++||||||+.... ..+|...+.|+++ .+.+.++|-|.
T Consensus 2 ~~kli~~DlDGTLl~~~~-------------------------------------~i~~~~~~al~~~~~~g~~v~iaTG 44 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNK-------------------------------------TISPETKEALARLREKGVKVVLATG 44 (264)
T ss_pred CeeEEEEcCCCCccCCCC-------------------------------------ccCHHHHHHHHHHHHCCCEEEEECC
Confidence 357899999999997742 1566777788877 57899999999
Q ss_pred CcHHHHHHHHHHHcCCC
Q 000938 982 GNKLYATEMAKVLDPKG 998 (1218)
Q Consensus 982 GtreYAd~VLdiLDP~g 998 (1218)
..-..+.++++.|...+
T Consensus 45 R~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 45 RPLPDVLSILEELGLDG 61 (264)
T ss_pred CChHHHHHHHHHcCCCc
Confidence 99999999999988776
No 94
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=82.72 E-value=2 Score=47.56 Aligned_cols=86 Identities=19% Similarity=0.146 Sum_probs=58.3
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD- 1034 (1218)
+.++||+.++|+.+.+ .+.++|.|++...++..+++.++-.+ +|. .+++.++.. ..+.. . ..++.+.+.+|..
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~-~f~-~i~~~d~~~-~~Kp~-p-~~~~~~~~~~g~~~ 174 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR-YFR-WIIGGDTLP-QKKPD-P-AALLFVMKMAGVPP 174 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh-hCe-EEEecCCCC-CCCCC-c-HHHHHHHHHhCCCh
Confidence 5679999999999974 69999999999999999999876543 675 466544321 11110 0 0122222345655
Q ss_pred CcEEEEeCCCCcc
Q 000938 1035 SAVVIIDDSVRVW 1047 (1218)
Q Consensus 1035 srVVIVDDspdVW 1047 (1218)
+.+|+|+|+..-.
T Consensus 175 ~~~l~IGD~~~Di 187 (272)
T PRK13223 175 SQSLFVGDSRSDV 187 (272)
T ss_pred hHEEEECCCHHHH
Confidence 8899999996443
No 95
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=82.05 E-value=3.7 Score=41.78 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=48.3
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD- 1034 (1218)
+.++|+. -|++|.+ .+.++|.|+..+..+..+++.+.-.. +|... .. +. ..++.+..-+|.+
T Consensus 29 ~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~-~~~~~---~~------k~----~~~~~~~~~~~~~~ 92 (154)
T TIGR01670 29 FNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITH-LYQGQ---SN------KL----IAFSDILEKLALAP 92 (154)
T ss_pred EechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCE-EEecc---cc------hH----HHHHHHHHHcCCCH
Confidence 4677776 6777764 69999999999999999998876543 44321 00 00 1223332234555
Q ss_pred CcEEEEeCCCCcc
Q 000938 1035 SAVVIIDDSVRVW 1047 (1218)
Q Consensus 1035 srVVIVDDspdVW 1047 (1218)
+.++.|-|+..=.
T Consensus 93 ~~~~~vGDs~~D~ 105 (154)
T TIGR01670 93 ENVAYIGDDLIDW 105 (154)
T ss_pred HHEEEECCCHHHH
Confidence 7899998886443
No 96
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=81.97 E-value=1.4 Score=44.79 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=58.2
Q ss_pred EEecCCHHHHHHHHhccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-C
Q 000938 957 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1035 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-s 1035 (1218)
+..-|+ .++|+.+.+.+.+.|-|++.+.+++.+++.+.=.+ +|.. +++.++... .+.+ +..+.+-++ .+|.. +
T Consensus 87 ~~~~~~-~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~fd~-i~~~~~~~~-~KP~-p~~~~~~~~-~~~~~~~ 160 (188)
T PRK10725 87 VEPLPL-IEVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YFDA-VVAADDVQH-HKPA-PDTFLRCAQ-LMGVQPT 160 (188)
T ss_pred CCCccH-HHHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-HceE-EEehhhccC-CCCC-hHHHHHHHH-HcCCCHH
Confidence 345576 48999998879999999999999999999887554 7764 776654321 1211 112233333 35665 7
Q ss_pred cEEEEeCCCCccc
Q 000938 1036 AVVIIDDSVRVWP 1048 (1218)
Q Consensus 1036 rVVIVDDspdVW~ 1048 (1218)
.+|+|+|++.-..
T Consensus 161 ~~l~igDs~~di~ 173 (188)
T PRK10725 161 QCVVFEDADFGIQ 173 (188)
T ss_pred HeEEEeccHhhHH
Confidence 8999999965543
No 97
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=81.48 E-value=2.4 Score=42.40 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=40.9
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeee
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 1006 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIy 1006 (1218)
+.+|||+.++|+.+.+ .+.++|.|++.+.|+..+++.+.-. .+|..++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~~~~~ 121 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID-DVFANRLE 121 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc-hheeeeEE
Confidence 5689999999999975 5899999999999999999988654 36666544
No 98
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=81.28 E-value=1.8 Score=51.14 Aligned_cols=86 Identities=14% Similarity=0.138 Sum_probs=61.4
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD- 1034 (1218)
+.+.||+.+||+.|.+ .+.+.|-|++.+.|++.+++.+.=.. ||.. |+..+++.. .+.+ +..+.+-+. .+|..
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yFd~-Iv~sddv~~-~KP~-Peifl~A~~-~lgl~P 289 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FFSV-IVAAEDVYR-GKPD-PEMFIYAAQ-LLNFIP 289 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-HceE-EEecCcCCC-CCCC-HHHHHHHHH-HcCCCc
Confidence 4578999999999975 59999999999999999999887654 7874 776554321 1211 112333444 45665
Q ss_pred CcEEEEeCCCCcc
Q 000938 1035 SAVVIIDDSVRVW 1047 (1218)
Q Consensus 1035 srVVIVDDspdVW 1047 (1218)
+.+|+|+|+..-.
T Consensus 290 eecl~IGDS~~DI 302 (381)
T PLN02575 290 ERCIVFGNSNQTV 302 (381)
T ss_pred ccEEEEcCCHHHH
Confidence 8899999987544
No 99
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=80.87 E-value=2.7 Score=47.77 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=12.9
Q ss_pred eEEEEeCCCceeecc
Q 000938 905 LCLVLDLDHTLLNSA 919 (1218)
Q Consensus 905 LTLVLDLDETLIHSs 919 (1218)
+.+++||||||+++.
T Consensus 1 ~~~ifD~DGvL~~g~ 15 (321)
T TIGR01456 1 FGFAFDIDGVLFRGK 15 (321)
T ss_pred CEEEEeCcCceECCc
Confidence 468999999999874
No 100
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=80.46 E-value=1.5 Score=44.11 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=53.4
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD- 1034 (1218)
+.+.||+.+||+.|.+ .|.++|.|++ .++..+++.+.-.+ +|.. ++..++... .+.. +..+.+=++ -+|..
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f~~-v~~~~~~~~-~kp~-~~~~~~~~~-~~~~~~ 159 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YFDA-IVDADEVKE-GKPH-PETFLLAAE-LLGVSP 159 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HCCE-eeehhhCCC-CCCC-hHHHHHHHH-HcCCCH
Confidence 6789999999999975 5899999988 78888888765543 6765 454332211 1110 001222233 34555
Q ss_pred CcEEEEeCCCCc
Q 000938 1035 SAVVIIDDSVRV 1046 (1218)
Q Consensus 1035 srVVIVDDspdV 1046 (1218)
+.+|+|+|+..-
T Consensus 160 ~~~v~IgD~~~d 171 (185)
T TIGR02009 160 NECVVFEDALAG 171 (185)
T ss_pred HHeEEEeCcHhh
Confidence 789999999643
No 101
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=80.24 E-value=2.6 Score=47.61 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=19.5
Q ss_pred hhhhhcCCCeEEEEeCCCceeecc
Q 000938 896 QKKMFSARKLCLVLDLDHTLLNSA 919 (1218)
Q Consensus 896 q~rLLs~kKLTLVLDLDETLIHSs 919 (1218)
+-+.-+.+++.+|||||||++..+
T Consensus 71 ~~k~~k~K~~aVvlDlDETvLdNs 94 (274)
T COG2503 71 QAKKKKGKKKAVVLDLDETVLDNS 94 (274)
T ss_pred hhccccCCCceEEEecchHhhcCc
Confidence 445556788899999999999875
No 102
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=79.89 E-value=2.7 Score=44.16 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=28.4
Q ss_pred HHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcC
Q 000938 963 IWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDP 996 (1218)
Q Consensus 963 LdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP 996 (1218)
..+.|+++.+ ...++|.|......+..+++.|.-
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~ 55 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGL 55 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 5678888775 489999999999999999998764
No 103
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=79.57 E-value=1.2 Score=46.24 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=55.6
Q ss_pred EEEEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCC
Q 000938 955 MWTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM 1033 (1218)
Q Consensus 955 ~YVKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGR 1033 (1218)
++..++||+.++|+.+.+ .|.++|.|++.+.....++....--..+|.. +++-+++.. .+++ +..|.+=++ .+|.
T Consensus 81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~-v~~s~~~~~-~KP~-p~~~~~~~~-~~~~ 156 (199)
T PRK09456 81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADH-IYLSQDLGM-RKPE-ARIYQHVLQ-AEGF 156 (199)
T ss_pred HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCE-EEEecccCC-CCCC-HHHHHHHHH-HcCC
Confidence 346789999999999975 5999999999988766544321111235654 555443321 2221 112333344 4566
Q ss_pred C-CcEEEEeCCCCcc
Q 000938 1034 E-SAVVIIDDSVRVW 1047 (1218)
Q Consensus 1034 D-srVVIVDDspdVW 1047 (1218)
. +.+|+|||++.-.
T Consensus 157 ~p~~~l~vgD~~~di 171 (199)
T PRK09456 157 SAADAVFFDDNADNI 171 (199)
T ss_pred ChhHeEEeCCCHHHH
Confidence 5 8899999997543
No 104
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=79.50 E-value=3.9 Score=43.03 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCC
Q 000938 960 RPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKG 998 (1218)
Q Consensus 960 RPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g 998 (1218)
.|...+-|+++.+ .+.++|.|.-....+..+++.|+..+
T Consensus 20 ~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~ 59 (215)
T TIGR01487 20 SERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSG 59 (215)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCC
Confidence 3455566666664 48899999998888888988888764
No 105
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=79.24 E-value=4.4 Score=43.88 Aligned_cols=36 Identities=11% Similarity=-0.007 Sum_probs=27.6
Q ss_pred CCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcC
Q 000938 961 PGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDP 996 (1218)
Q Consensus 961 PGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP 996 (1218)
|...++|+++.+ ...++|.|.-+...+..+++.|.-
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 346778888875 488999998888887888877763
No 106
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=79.05 E-value=4 Score=42.49 Aligned_cols=85 Identities=20% Similarity=0.184 Sum_probs=58.8
Q ss_pred EEecCCHHHHHHHHhccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-C
Q 000938 957 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1035 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-s 1035 (1218)
+...|++.++|+.+.+.|.++|.|+|...++...+..+- =..+|.. ++.-++.+ ..+.+ +..|..=+. .+|.+ +
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~g-l~~~Fd~-v~~s~~~g-~~KP~-~~~f~~~~~-~~g~~p~ 172 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLG-LLDYFDA-VFISEDVG-VAKPD-PEIFEYALE-KLGVPPE 172 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcC-Chhhhhe-EEEecccc-cCCCC-cHHHHHHHH-HcCCCcc
Confidence 678899999999999889999999999999999999776 3347776 44434332 12211 111222233 34655 7
Q ss_pred cEEEEeCCCCc
Q 000938 1036 AVVIIDDSVRV 1046 (1218)
Q Consensus 1036 rVVIVDDspdV 1046 (1218)
.++.|||+...
T Consensus 173 ~~l~VgD~~~~ 183 (229)
T COG1011 173 EALFVGDSLEN 183 (229)
T ss_pred eEEEECCChhh
Confidence 89999999753
No 107
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=78.98 E-value=2.5 Score=47.27 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=59.3
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeee-eeeecCCCCCCCCCCCCCCcccccccccCCC
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAG-RVISRGDDGDPFDGDERVPKSKDLEGVLGME 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~-RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD 1034 (1218)
+.+.||+.+||+.+.+ .|.++|.|++...++..+++.+.-.+ +|.. .++..+++. ..+. ++..+.+=+. .+|.+
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~-~~KP-~p~~~~~a~~-~~~~~ 218 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPE-RAQGLDVFAGDDVP-KKKP-DPDIYNLAAE-TLGVD 218 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcccc-ccCceEEEeccccC-CCCC-CHHHHHHHHH-HhCcC
Confidence 5789999999999975 69999999999999999998662111 2321 233333321 1111 0011222233 45665
Q ss_pred -CcEEEEeCCCCccccCcCCccc
Q 000938 1035 -SAVVIIDDSVRVWPHNKLNLIV 1056 (1218)
Q Consensus 1035 -srVVIVDDspdVW~~qpdN~I~ 1056 (1218)
+.+|+|+|++.-+..-...++.
T Consensus 219 p~~~l~IGDs~~Di~aA~~aG~~ 241 (286)
T PLN02779 219 PSRCVVVEDSVIGLQAAKAAGMR 241 (286)
T ss_pred hHHEEEEeCCHHhHHHHHHcCCE
Confidence 7899999998655433334443
No 108
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=78.80 E-value=4.6 Score=39.79 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=53.7
Q ss_pred EEEecCCHHHHHHHHh-ccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC
Q 000938 956 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1034 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLS-k~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD 1034 (1218)
.....||+.++|+.+. +.+.++|.|++.+.++..+++.+ -..+|. .++..++.. .+. .+..+.+=+. .+|..
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~--l~~~f~-~i~~~~~~~--~Kp-~~~~~~~~~~-~~~~~ 134 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH--LGDYFD-LILGSDEFG--AKP-EPEIFLAALE-SLGLP 134 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH--HHhcCc-EEEecCCCC--CCc-CHHHHHHHHH-HcCCC
Confidence 3455699999999995 56999999999999999999984 123565 466654321 121 1112222232 23443
Q ss_pred CcEEEEeCCC
Q 000938 1035 SAVVIIDDSV 1044 (1218)
Q Consensus 1035 srVVIVDDsp 1044 (1218)
..+|+|.|++
T Consensus 135 ~~~l~iGDs~ 144 (154)
T TIGR01549 135 PEVLHVGDNL 144 (154)
T ss_pred CCEEEEeCCH
Confidence 3799999984
No 109
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=78.06 E-value=3 Score=47.49 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=43.1
Q ss_pred EEEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHH---cCCCceeeeeeee
Q 000938 956 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVL---DPKGVLFAGRVIS 1007 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiL---DP~g~LF~~RIyS 1007 (1218)
-+.+|||+.+||+.|.+ .+.++|+|+|...++..+++.+ ++...++++++.-
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f 174 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDF 174 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEE
Confidence 47899999999999975 5999999999999999999953 3555677777653
No 110
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=77.62 E-value=4.8 Score=44.14 Aligned_cols=58 Identities=21% Similarity=0.150 Sum_probs=37.8
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHh-ccceEEEEc
Q 000938 902 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYT 980 (1218)
Q Consensus 902 ~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLS-k~YEIVIFT 980 (1218)
+.++.+++||||||++... .+ -|-..+-|+++. +...++|.|
T Consensus 5 ~~~~lI~~DlDGTLL~~~~--~i-----------------------------------~~~~~~ai~~l~~~Gi~~viaT 47 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHT--YD-----------------------------------WQPAAPWLTRLREAQVPVILCS 47 (271)
T ss_pred CCCeEEEEeCccCCcCCCC--cC-----------------------------------cHHHHHHHHHHHHcCCeEEEEc
Confidence 4577899999999997632 01 112334455554 346777777
Q ss_pred CCcHHHHHHHHHHHcC
Q 000938 981 MGNKLYATEMAKVLDP 996 (1218)
Q Consensus 981 AGtreYAd~VLdiLDP 996 (1218)
.-....+..+++.|+.
T Consensus 48 GR~~~~i~~~~~~l~~ 63 (271)
T PRK03669 48 SKTAAEMLPLQQTLGL 63 (271)
T ss_pred CCCHHHHHHHHHHhCC
Confidence 7777777777777654
No 111
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=77.36 E-value=3.8 Score=42.55 Aligned_cols=81 Identities=17% Similarity=0.077 Sum_probs=55.0
Q ss_pred EecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-C
Q 000938 958 KLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1035 (1218)
Q Consensus 958 KlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-s 1035 (1218)
+..|+..++|+.|.+ .+.+.|.|++.+.++..+++.+.-.. +|.. +++.++... +. .+..+.+-+. -+|.+ +
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f~~-~~~~~~~~~--KP-~p~~~~~~~~-~~~~~~~ 179 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI-LFPV-QIWMEDCPP--KP-NPEPLILAAK-ALGVEAC 179 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh-hCCE-EEeecCCCC--Cc-CHHHHHHHHH-HhCcCcc
Confidence 345566999999985 59999999999999999999887554 6754 555443221 21 1112233333 34655 7
Q ss_pred cEEEEeCCC
Q 000938 1036 AVVIIDDSV 1044 (1218)
Q Consensus 1036 rVVIVDDsp 1044 (1218)
.+|+|+|++
T Consensus 180 ~~i~vGD~~ 188 (197)
T TIGR01548 180 HAAMVGDTV 188 (197)
T ss_pred cEEEEeCCH
Confidence 899999986
No 112
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=77.35 E-value=4.6 Score=43.49 Aligned_cols=37 Identities=16% Similarity=0.033 Sum_probs=27.8
Q ss_pred CCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCC
Q 000938 961 PGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPK 997 (1218)
Q Consensus 961 PGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~ 997 (1218)
|...+.|+++.+ .+.++|-|......+..+++.|...
T Consensus 19 ~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 19 PSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 445566777664 5889999999988888888877655
No 113
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=77.20 E-value=2.9 Score=46.59 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=85.8
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhc---ccccCCCcceee--e---eccceEEEEecCCHHHHHHHHh-cc
Q 000938 903 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKE---EQDREKPHRHLF--R---FPHMGMWTKLRPGIWTFLERAS-KL 973 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~E---e~D~~~P~~~lF--~---~~~~~~YVKlRPGLdEFLeeLS-k~ 973 (1218)
....+|+|+|+||+-....- ..+.+..|....- ..+...+....| . +....-+...-|.+-.|++.++ +.
T Consensus 19 ~~tLvvfDiDdTLi~~~~~l-g~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~ 97 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPL-GSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKG 97 (252)
T ss_pred CCeEEEEEcchhhhcCcccc-CCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCC
Confidence 77889999999999765211 1222222221110 000001111111 0 1112235677899999999998 45
Q ss_pred ceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCC------CC-------CCCCC------CCCCCcccccccccCCC
Q 000938 974 FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGD------DG-------DPFDG------DERVPKSKDLEGVLGME 1034 (1218)
Q Consensus 974 YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDd------c~-------~~~dG------~Er~~yiKDLsrVLGRD 1034 (1218)
.-++.+|+....|...-++.|---|--|..+.+..+. ++ -+.+| ...+..++.+-..+|..
T Consensus 98 ~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~~~~ 177 (252)
T PF11019_consen 98 IPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKINQS 177 (252)
T ss_pred CcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHcCCC
Confidence 9999999999999999888875555445544221110 00 01111 11111122222233555
Q ss_pred -CcEEEEeCCCCccc----cCcCCccccccccc
Q 000938 1035 -SAVVIIDDSVRVWP----HNKLNLIVVERYTY 1062 (1218)
Q Consensus 1035 -srVVIVDDspdVW~----~qpdN~I~IkPY~y 1062 (1218)
+.||+|||+.+.-. .+....|..--|+|
T Consensus 178 pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Y 210 (252)
T PF11019_consen 178 PKKIIFIDDNKENLKSVEKACKKSGIDFIGFHY 210 (252)
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEE
Confidence 89999999976442 22345666666665
No 114
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=76.91 E-value=4.1 Score=42.12 Aligned_cols=82 Identities=16% Similarity=0.136 Sum_probs=52.4
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD- 1034 (1218)
+.+-||+.++|++|.+ .|.++|.|++...+ ..+++.+.-.+ +|.. ++..++.. ..+.+ +..+.+-++ -+|.+
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~~-~fd~-i~~s~~~~-~~KP~-~~~~~~~~~-~~~~~~ 177 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLLE-YFDF-VVTSYEVG-AEKPD-PKIFQEALE-RAGISP 177 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcHH-hcce-EEeecccC-CCCCC-HHHHHHHHH-HcCCCh
Confidence 3678999999999986 59999999998764 66676654432 6654 55433322 11211 111223333 35665
Q ss_pred CcEEEEeCCC
Q 000938 1035 SAVVIIDDSV 1044 (1218)
Q Consensus 1035 srVVIVDDsp 1044 (1218)
+.+|+|+|+.
T Consensus 178 ~~~~~IgD~~ 187 (203)
T TIGR02252 178 EEALHIGDSL 187 (203)
T ss_pred hHEEEECCCc
Confidence 8899999985
No 115
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=76.44 E-value=4.9 Score=43.45 Aligned_cols=57 Identities=19% Similarity=0.134 Sum_probs=38.7
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhc-cceEEEEcCC
Q 000938 904 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG 982 (1218)
Q Consensus 904 KLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk-~YEIVIFTAG 982 (1218)
.+.+++||||||++... .+ -|...+-|+++.+ -+.++|-|.-
T Consensus 3 ~kli~~DlDGTLl~~~~--~i-----------------------------------~~~~~~ai~~l~~~G~~~~iaTGR 45 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH--TI-----------------------------------SPAVKQAIAAARAKGVNVVLTTGR 45 (270)
T ss_pred eEEEEEecCCcCcCCCC--cc-----------------------------------CHHHHHHHHHHHHCCCEEEEecCC
Confidence 46789999999997632 12 2233455666654 4778888887
Q ss_pred cHHHHHHHHHHHcCC
Q 000938 983 NKLYATEMAKVLDPK 997 (1218)
Q Consensus 983 treYAd~VLdiLDP~ 997 (1218)
....+..+++.|...
T Consensus 46 ~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 46 PYAGVHRYLKELHME 60 (270)
T ss_pred ChHHHHHHHHHhCCC
Confidence 777777777777643
No 116
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=76.34 E-value=4 Score=42.30 Aligned_cols=37 Identities=27% Similarity=0.208 Sum_probs=30.1
Q ss_pred ecCCHHHHHHHHhcc-ceEEEEcCCcHHHHHHHHHHHc
Q 000938 959 LRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLD 995 (1218)
Q Consensus 959 lRPGLdEFLeeLSk~-YEIVIFTAGtreYAd~VLdiLD 995 (1218)
..|.+.+.|+++.+. ..++|-|.....++..+++.++
T Consensus 18 ~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 18 LSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 346777888888865 7899999999999999988653
No 117
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=76.30 E-value=7.2 Score=41.99 Aligned_cols=57 Identities=25% Similarity=0.258 Sum_probs=34.6
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHh-ccceEEEEcCC
Q 000938 904 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTMG 982 (1218)
Q Consensus 904 KLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLS-k~YEIVIFTAG 982 (1218)
.+.+++||||||+.... .+.| ...+-|+++. +...++|-|.-
T Consensus 3 ~kli~~DlDGTLl~~~~--~i~~-----------------------------------~~~~ai~~~~~~G~~~~iaTGR 45 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK--TILP-----------------------------------ESLEALARAREAGYKVIIVTGR 45 (272)
T ss_pred ccEEEEeCCCceECCCC--ccCH-----------------------------------HHHHHHHHHHHCCCEEEEEcCC
Confidence 35789999999997642 1222 2233444444 34666666666
Q ss_pred cHHHHHHHHHHHcCC
Q 000938 983 NKLYATEMAKVLDPK 997 (1218)
Q Consensus 983 treYAd~VLdiLDP~ 997 (1218)
....+..+++.|...
T Consensus 46 ~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 46 HHVAIHPFYQALALD 60 (272)
T ss_pred ChHHHHHHHHhcCCC
Confidence 666666666666544
No 118
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=75.78 E-value=4.8 Score=44.01 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=61.8
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCC-C
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-E 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGR-D 1034 (1218)
+.+-||+.++|+.|.+ .|.+.|-|++.+.++..+++.+.-.+ +|...+++.++... .+. .+..+.+-+. .+|. +
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~d~i~~~~~~~~-~KP-~p~~~~~a~~-~l~~~~ 175 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQG-YRPDHVVTTDDVPA-GRP-YPWMALKNAI-ELGVYD 175 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCceEEEcCCcCCC-CCC-ChHHHHHHHH-HcCCCC
Confidence 5678999999999975 69999999999999999998766554 43244666554321 111 1112334444 3564 3
Q ss_pred -CcEEEEeCCCCccccCcCCcc
Q 000938 1035 -SAVVIIDDSVRVWPHNKLNLI 1055 (1218)
Q Consensus 1035 -srVVIVDDspdVW~~qpdN~I 1055 (1218)
+.+|+|+|++.-...-...++
T Consensus 176 ~~e~l~IGDs~~Di~aA~~aG~ 197 (267)
T PRK13478 176 VAACVKVDDTVPGIEEGLNAGM 197 (267)
T ss_pred CcceEEEcCcHHHHHHHHHCCC
Confidence 679999999844332233444
No 119
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=74.63 E-value=6 Score=46.96 Aligned_cols=74 Identities=18% Similarity=0.134 Sum_probs=62.5
Q ss_pred hccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCC--CCHHHHHHHHcCCcEEcHHHHHHHHH
Q 000938 1127 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSL--GTDKVNWALSTGRFVVHPGWVEASAL 1204 (1218)
Q Consensus 1127 ILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~--gTeKVk~Alk~GIkIVSPdWLedCl~ 1204 (1218)
.-+|-.|+|+|-+-. ++..|...+-..|-.|+..++..+.-|||+.. .+-|...|...||++|+-.=+.+++.
T Consensus 294 lv~Gm~v~~~~e~~~-----~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~ 368 (377)
T PRK05601 294 LVAGMEVVVAPEITM-----DPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVE 368 (377)
T ss_pred cccCcEEEEeCCccC-----CHHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHH
Confidence 567889999985432 35678889999999999999999999999975 46799999999999999888877765
Q ss_pred h
Q 000938 1205 L 1205 (1218)
Q Consensus 1205 ~ 1205 (1218)
.
T Consensus 369 ~ 369 (377)
T PRK05601 369 R 369 (377)
T ss_pred H
Confidence 4
No 120
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=74.45 E-value=3.8 Score=42.26 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=41.1
Q ss_pred EEEecCCHHHHHHHHhccceEEEEcCCcHHHHHHHHHHHcCCCceeeeee
Q 000938 956 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRV 1005 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLSk~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RI 1005 (1218)
.+.++||+.+||+.+.+.+.++|.|++...|++.+++.+.-.. +|.+++
T Consensus 66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f~~~~ 114 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LFCHSL 114 (205)
T ss_pred hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hhcceE
Confidence 3567899999999998779999999999999999999887543 565544
No 121
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=74.39 E-value=4.4 Score=43.49 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=43.4
Q ss_pred EEecCCHHHHHHHHhccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeee
Q 000938 957 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 1007 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIyS 1007 (1218)
+.++||+.+||+.+.+.+.++|-|++...|+.++++.|.-+. +|.+++..
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~an~l~~ 116 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLEI 116 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hhceeeEE
Confidence 578999999999999888999999999999999999987654 67766554
No 122
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=73.88 E-value=8.1 Score=40.65 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=39.9
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhc-cceEEEEcCCc
Q 000938 905 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGN 983 (1218)
Q Consensus 905 LTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk-~YEIVIFTAGt 983 (1218)
+.|++||||||+.... .+.|...+-|+++.+ ...++|-|.-.
T Consensus 4 kli~~DlDGTLl~~~~-------------------------------------~i~~~~~~al~~l~~~G~~~~iaTGR~ 46 (230)
T PRK01158 4 KAIAIDIDGTITDKDR-------------------------------------RLSLKAVEAIRKAEKLGIPVILATGNV 46 (230)
T ss_pred eEEEEecCCCcCCCCC-------------------------------------ccCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 5789999999996531 123444555666654 46888888888
Q ss_pred HHHHHHHHHHHcCCC
Q 000938 984 KLYATEMAKVLDPKG 998 (1218)
Q Consensus 984 reYAd~VLdiLDP~g 998 (1218)
...+.++++.|...+
T Consensus 47 ~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 47 LCFARAAAKLIGTSG 61 (230)
T ss_pred hHHHHHHHHHhCCCC
Confidence 888888888776553
No 123
>PTZ00174 phosphomannomutase; Provisional
Probab=73.55 E-value=3 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=17.1
Q ss_pred CCeEEEEeCCCceeecccCCCCCCc
Q 000938 903 RKLCLVLDLDHTLLNSAKFHEVDPV 927 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs~~~evdP~ 927 (1218)
..+.+++||||||+++.. +++|.
T Consensus 4 ~~klia~DlDGTLL~~~~--~is~~ 26 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRN--PITQE 26 (247)
T ss_pred CCeEEEEECcCCCcCCCC--CCCHH
Confidence 456799999999998853 34543
No 124
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=73.40 E-value=4.4 Score=43.01 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=35.1
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHH
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVL 994 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiL 994 (1218)
+.++||+.+||+.+.+ .+.++|.|++.+.|+..+++.+
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 6899999999999975 5999999999999999999876
No 125
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=73.15 E-value=2.1 Score=44.53 Aligned_cols=87 Identities=25% Similarity=0.158 Sum_probs=50.4
Q ss_pred EEEecCCHHHHHHHHhc-cceEEEEcCCcHHH--HHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccC
Q 000938 956 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLY--ATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG 1032 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLSk-~YEIVIFTAGtreY--Ad~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLG 1032 (1218)
.+.+.||+.+||+.|.+ .|.++|.|++...+ +...+..++- ..+|.. ++.-++.. ..+.+ +..|.+-++ .+|
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l-~~~fd~-v~~s~~~~-~~KP~-p~~~~~~~~-~~g 166 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDI-MALFDA-VVESCLEG-LRKPD-PRIYQLMLE-RLG 166 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhh-HhhCCE-EEEeeecC-CCCCC-HHHHHHHHH-HcC
Confidence 36689999999999985 59999999987654 2222221211 135654 55433221 11211 112333333 356
Q ss_pred CC-CcEEEEeCCCCcc
Q 000938 1033 ME-SAVVIIDDSVRVW 1047 (1218)
Q Consensus 1033 RD-srVVIVDDspdVW 1047 (1218)
.. +.+|+|||+..-.
T Consensus 167 ~~~~~~l~i~D~~~di 182 (211)
T TIGR02247 167 VAPEECVFLDDLGSNL 182 (211)
T ss_pred CCHHHeEEEcCCHHHH
Confidence 65 7889999986543
No 126
>PLN02940 riboflavin kinase
Probab=72.92 E-value=3.1 Score=48.63 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=57.1
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHH-HHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAK-VLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLd-iLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD 1034 (1218)
+.+.||+.++|+.|.+ .+.+.|-|++.+.++..+++ .++=. .+|.. +++.+++.. .+. .+..+.+-++ .+|..
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd~-ii~~d~v~~-~KP-~p~~~~~a~~-~lgv~ 166 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFSV-IVGGDEVEK-GKP-SPDIFLEAAK-RLNVE 166 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCCE-EEehhhcCC-CCC-CHHHHHHHHH-HcCCC
Confidence 5678999999999975 59999999999999998876 44433 36765 665554321 111 1112233333 34555
Q ss_pred -CcEEEEeCCCCcc
Q 000938 1035 -SAVVIIDDSVRVW 1047 (1218)
Q Consensus 1035 -srVVIVDDspdVW 1047 (1218)
+++|+|+|+..--
T Consensus 167 p~~~l~VGDs~~Di 180 (382)
T PLN02940 167 PSNCLVIEDSLPGV 180 (382)
T ss_pred hhHEEEEeCCHHHH
Confidence 7899999998533
No 127
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=72.84 E-value=7 Score=42.42 Aligned_cols=34 Identities=21% Similarity=0.082 Sum_probs=27.6
Q ss_pred HHHHHHHHhcc-ceEEEEcCCcHHHHHHHHHHHcC
Q 000938 963 IWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDP 996 (1218)
Q Consensus 963 LdEFLeeLSk~-YEIVIFTAGtreYAd~VLdiLDP 996 (1218)
..++|+++.+. +.++|.|.-....+..+++.|+.
T Consensus 21 ~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~ 55 (256)
T TIGR01486 21 AKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGL 55 (256)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 57788888764 88999998888888888888764
No 128
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=72.31 E-value=5.8 Score=41.50 Aligned_cols=85 Identities=15% Similarity=0.073 Sum_probs=58.2
Q ss_pred EEecCCHHHHHHHHh-ccceEEEEcCCcHHHHHHHHHHHcCC-CceeeeeeeecCCCCCCCCCCCCCCcccccccccCC-
Q 000938 957 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPK-GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM- 1033 (1218)
Q Consensus 957 VKlRPGLdEFLeeLS-k~YEIVIFTAGtreYAd~VLdiLDP~-g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGR- 1033 (1218)
+.+.||+.+||+.|. +.|.+.|.|++...++..+++.++-. +.+|.. +++.++-. ..+. .+..+.+=+. .+|.
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~-i~~~~~~~-~~KP-~p~~~~~a~~-~~~~~ 161 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDA-VVCPSDVA-AGRP-APDLILRAME-LTGVQ 161 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCE-EEcCCcCC-CCCC-CHHHHHHHHH-HcCCC
Confidence 478999999999996 56999999999999999999988754 257764 66554321 1111 0111222233 2454
Q ss_pred -CCcEEEEeCCCC
Q 000938 1034 -ESAVVIIDDSVR 1045 (1218)
Q Consensus 1034 -DsrVVIVDDspd 1045 (1218)
.+.+|+|+|++.
T Consensus 162 ~~~~~~~igD~~~ 174 (220)
T TIGR03351 162 DVQSVAVAGDTPN 174 (220)
T ss_pred ChhHeEEeCCCHH
Confidence 278999999974
No 129
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=71.27 E-value=8.9 Score=49.03 Aligned_cols=63 Identities=29% Similarity=0.371 Sum_probs=45.6
Q ss_pred HHHHHhCCEEecccC------CCccEEEeCCCC--CHHH--HHHHH--cCCcEEcHHHHHHHHHhcccCCCCCCC
Q 000938 1153 QTAEQFGAVCTKHID------DQVTHVVANSLG--TDKV--NWALS--TGRFVVHPGWVEASALLYRRANEQDFA 1215 (1218)
Q Consensus 1153 kLAeqLGAtVssdVd------~kVTHLVAss~g--TeKV--k~Alk--~GIkIVSPdWLedCl~~wkRVDEsdYl 1215 (1218)
-.++.+|+.+...-. .++||+|+.-.+ +.+. ..|.. ...+||.|.|+.+|+.....++|..|+
T Consensus 807 l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt~~rkv~~~~wv~~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 807 LKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLTIKRKVVAPSWVDHSINENCLLPEEDFP 881 (881)
T ss_pred HHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhcccccccCHHHHHHhhcccccCccccCC
Confidence 347788999865433 478999998432 2332 23322 234999999999999999999999985
No 130
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=70.76 E-value=3.7 Score=44.25 Aligned_cols=85 Identities=19% Similarity=0.159 Sum_probs=63.9
Q ss_pred EEecCCHHHHHHHHhcc-ceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-
Q 000938 957 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk~-YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD- 1034 (1218)
++..||+.+||+.|... .-+.+-|.+.+..+..+++.+.-.. +|...+++ ++.... +. .+-.|.+-.. .||..
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v~~-~dv~~~-KP-~Pd~yL~Aa~-~Lgv~P 159 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIVTA-DDVARG-KP-APDIYLLAAE-RLGVDP 159 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hcchhccH-HHHhcC-CC-CCHHHHHHHH-HcCCCh
Confidence 68999999999999977 9999999999999999998887665 78775654 332211 11 1234666676 36766
Q ss_pred CcEEEEeCCCCc
Q 000938 1035 SAVVIIDDSVRV 1046 (1218)
Q Consensus 1035 srVVIVDDspdV 1046 (1218)
.++|+|+|++.-
T Consensus 160 ~~CvviEDs~~G 171 (221)
T COG0637 160 EECVVVEDSPAG 171 (221)
T ss_pred HHeEEEecchhH
Confidence 899999999753
No 131
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=69.83 E-value=10 Score=41.38 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=22.7
Q ss_pred chHHHHHHHhCCEEecccC-----------CCccEEEeCCCCCHHHHHH
Q 000938 1149 HPLWQTAEQFGAVCTKHID-----------DQVTHVVANSLGTDKVNWA 1186 (1218)
Q Consensus 1149 ~~LwkLAeqLGAtVssdVd-----------~kVTHLVAss~gTeKVk~A 1186 (1218)
..+..+++.+|-....-+. ..+.|=||-....+.++.+
T Consensus 191 ~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~vK~~ 239 (272)
T PRK15126 191 AALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNAMPQLRAE 239 (272)
T ss_pred HHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCChHHHHHh
Confidence 4588889999854322211 2355666666666666654
No 132
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=69.68 E-value=6.3 Score=44.16 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=55.2
Q ss_pred EEecCCHHHHHHHHh-ccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-
Q 000938 957 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLS-k~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD- 1034 (1218)
+.+.||+.++|+.|. +.+.+.|.|++.+.++..+++.++-.. +|.. +++.++. .. .+..+.+=+. .++..
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F~~-vi~~~~~---~~--k~~~~~~~l~-~~~~~p 212 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LFSV-VQAGTPI---LS--KRRALSQLVA-REGWQP 212 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-heEE-EEecCCC---CC--CHHHHHHHHH-HhCcCh
Confidence 566899999999997 468999999999999999999987654 6764 5443221 00 0001111122 23444
Q ss_pred CcEEEEeCCCC
Q 000938 1035 SAVVIIDDSVR 1045 (1218)
Q Consensus 1035 srVVIVDDspd 1045 (1218)
+.+|+|+|++.
T Consensus 213 ~~~l~IGDs~~ 223 (273)
T PRK13225 213 AAVMYVGDETR 223 (273)
T ss_pred hHEEEECCCHH
Confidence 78999999974
No 133
>PRK10444 UMP phosphatase; Provisional
Probab=69.47 E-value=7.8 Score=42.86 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=12.2
Q ss_pred EEEEeCCCceeecc
Q 000938 906 CLVLDLDHTLLNSA 919 (1218)
Q Consensus 906 TLVLDLDETLIHSs 919 (1218)
.+++||||||++..
T Consensus 3 ~v~~DlDGtL~~~~ 16 (248)
T PRK10444 3 NVICDIDGVLMHDN 16 (248)
T ss_pred EEEEeCCCceEeCC
Confidence 68899999999874
No 134
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=69.20 E-value=9.6 Score=39.86 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=19.2
Q ss_pred HHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHc
Q 000938 964 WTFLERASK-LFEMHLYTMGNKLYATEMAKVLD 995 (1218)
Q Consensus 964 dEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLD 995 (1218)
.+-|+++.+ -..++|.|.-....+.++++.|.
T Consensus 21 ~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~ 53 (225)
T TIGR01482 21 LEAIRKAESVGIPVVLVTGNSVQFARALAKLIG 53 (225)
T ss_pred HHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhC
Confidence 344455443 36677777766666666666665
No 135
>PLN02645 phosphoglycolate phosphatase
Probab=69.04 E-value=6.8 Score=44.36 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=39.1
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHh-ccceEEEEcC
Q 000938 903 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTM 981 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLS-k~YEIVIFTA 981 (1218)
+-.++++|+||||++... + + ||..++|+++. +...+++.|+
T Consensus 27 ~~~~~~~D~DGtl~~~~~------------------------------------~-~-~ga~e~l~~lr~~g~~~~~~TN 68 (311)
T PLN02645 27 SVETFIFDCDGVIWKGDK------------------------------------L-I-EGVPETLDMLRSMGKKLVFVTN 68 (311)
T ss_pred hCCEEEEeCcCCeEeCCc------------------------------------c-C-cCHHHHHHHHHHCCCEEEEEeC
Confidence 345889999999997531 1 1 78888888886 4688888888
Q ss_pred CcHHHHHHHHHHHc
Q 000938 982 GNKLYATEMAKVLD 995 (1218)
Q Consensus 982 GtreYAd~VLdiLD 995 (1218)
....-...+++.|.
T Consensus 69 ~~~~~~~~~~~~l~ 82 (311)
T PLN02645 69 NSTKSRAQYGKKFE 82 (311)
T ss_pred CCCCCHHHHHHHHH
Confidence 77555555555544
No 136
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=68.83 E-value=6.5 Score=43.01 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=55.5
Q ss_pred EEEecCCHHHHHHHHh-ccceEEEEcCCcHHHHHHHHHHHcCC--CceeeeeeeecCCCCCCCCCCCCCCcccccccccC
Q 000938 956 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPK--GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG 1032 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLS-k~YEIVIFTAGtreYAd~VLdiLDP~--g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLG 1032 (1218)
...+.|++.++|+++. +.|.++|+|++...+...+++.++-. ..+|.. +|... .+ .+. ++..|.+=+. -+|
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~-~fd~~-~g--~KP-~p~~y~~i~~-~lg 166 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSG-YFDTT-VG--LKT-EAQSYVKIAG-QLG 166 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcce-EEEeC-cc--cCC-CHHHHHHHHH-HhC
Confidence 3568999999999996 46999999999999999888775311 124543 33211 11 111 1112333344 356
Q ss_pred CC-CcEEEEeCCCCcc
Q 000938 1033 ME-SAVVIIDDSVRVW 1047 (1218)
Q Consensus 1033 RD-srVVIVDDspdVW 1047 (1218)
.+ +.+++|+|+..-.
T Consensus 167 v~p~e~lfVgDs~~Di 182 (220)
T TIGR01691 167 SPPREILFLSDIINEL 182 (220)
T ss_pred cChhHEEEEeCCHHHH
Confidence 65 8899999997543
No 137
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=68.01 E-value=7.4 Score=46.27 Aligned_cols=84 Identities=10% Similarity=0.043 Sum_probs=56.9
Q ss_pred EEecCCHHHHHHHHh-ccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCCC
Q 000938 957 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMES 1035 (1218)
Q Consensus 957 VKlRPGLdEFLeeLS-k~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRDs 1035 (1218)
+.+.||+.++|+++. +.+.+.|.|++.+.|+..+++.++=.. +|.. +++.++... .+ .+..+.+-+.+ ++ .+
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f~~-i~~~d~v~~--~~-kP~~~~~al~~-l~-~~ 401 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WVTE-TFSIEQINS--LN-KSDLVKSILNK-YD-IK 401 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hcce-eEecCCCCC--CC-CcHHHHHHHHh-cC-cc
Confidence 567899999999997 569999999999999999999887654 6764 565443210 01 01122222322 22 26
Q ss_pred cEEEEeCCCCcc
Q 000938 1036 AVVIIDDSVRVW 1047 (1218)
Q Consensus 1036 rVVIVDDspdVW 1047 (1218)
.+|+|.|++.-.
T Consensus 402 ~~v~VGDs~~Di 413 (459)
T PRK06698 402 EAAVVGDRLSDI 413 (459)
T ss_pred eEEEEeCCHHHH
Confidence 799999997433
No 138
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=67.91 E-value=6.9 Score=43.79 Aligned_cols=84 Identities=25% Similarity=0.262 Sum_probs=55.5
Q ss_pred EEecCCHHHHHHHHhccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccc-------c
Q 000938 957 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLE-------G 1029 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLs-------r 1029 (1218)
+|.-|-|++||-.|.+.+ .+|||+|.+..|..+++.|--.. .|.. |++-+ .....+.....|-.. +
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cFeg-ii~~e----~~np~~~~~vcKP~~~afE~a~k 171 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CFEG-IICFE----TLNPIEKTVVCKPSEEAFEKAMK 171 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hccc-eeEee----ccCCCCCceeecCCHHHHHHHHH
Confidence 777888999999999888 99999999999999999987654 4654 44221 111100001112111 1
Q ss_pred ccCCC--CcEEEEeCCCCcc
Q 000938 1030 VLGME--SAVVIIDDSVRVW 1047 (1218)
Q Consensus 1030 VLGRD--srVVIVDDspdVW 1047 (1218)
+.|-+ .+++.+||+...-
T Consensus 172 ~agi~~p~~t~FfDDS~~NI 191 (244)
T KOG3109|consen 172 VAGIDSPRNTYFFDDSERNI 191 (244)
T ss_pred HhCCCCcCceEEEcCchhhH
Confidence 33543 7899999996544
No 139
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=67.39 E-value=7.6 Score=42.82 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=32.4
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhc-cceEEEEcCCc
Q 000938 905 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGN 983 (1218)
Q Consensus 905 LTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk-~YEIVIFTAGt 983 (1218)
.++++||||||++..... =..=|+..+||+++.+ -..+++.|+.+
T Consensus 2 k~i~~D~DGtl~~~~~~~----------------------------------~~~~~~a~~al~~l~~~G~~~~~~Tn~~ 47 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKS----------------------------------GVAVPGSQEAVKRLRGASVKVRFVTNTT 47 (257)
T ss_pred CEEEEeCCCeEEeCCCcc----------------------------------cCcCCCHHHHHHHHHHCCCeEEEEECCC
Confidence 378999999999774200 0024688888888875 47888888654
Q ss_pred HH
Q 000938 984 KL 985 (1218)
Q Consensus 984 re 985 (1218)
..
T Consensus 48 ~~ 49 (257)
T TIGR01458 48 KE 49 (257)
T ss_pred CC
Confidence 44
No 140
>PHA02597 30.2 hypothetical protein; Provisional
Probab=67.12 E-value=5.4 Score=41.20 Aligned_cols=95 Identities=13% Similarity=0.134 Sum_probs=56.7
Q ss_pred EEEecCCHHHHHHHHhccceEEEEcCCcHHHHHHHHHHHcCCC---ceeeeeeeecCCCCCCCCCCCCCCcccccccccC
Q 000938 956 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKG---VLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG 1032 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLSk~YEIVIFTAGtreYAd~VLdiLDP~g---~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLG 1032 (1218)
+++..||+.++|++|.+.|.+++-|++.......+++.+.-.+ .+|.+ +++.++. .+. +..+.+-+. .+|
T Consensus 72 ~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~-i~~~~~~----~~k-p~~~~~a~~-~~~ 144 (197)
T PHA02597 72 YLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSE-VLMCGHD----ESK-EKLFIKAKE-KYG 144 (197)
T ss_pred hccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccE-EEEeccC----ccc-HHHHHHHHH-HhC
Confidence 3678999999999999888888888877665555665553222 14543 4443322 111 112222232 345
Q ss_pred CCCcEEEEeCCCCccccCcCC--ccccc
Q 000938 1033 MESAVVIIDDSVRVWPHNKLN--LIVVE 1058 (1218)
Q Consensus 1033 RDsrVVIVDDspdVW~~qpdN--~I~Ik 1058 (1218)
.+.+|+|||+..-...-... +|.+-
T Consensus 145 -~~~~v~vgDs~~di~aA~~a~~Gi~~i 171 (197)
T PHA02597 145 -DRVVCFVDDLAHNLDAAHEALSQLPVI 171 (197)
T ss_pred -CCcEEEeCCCHHHHHHHHHHHcCCcEE
Confidence 56799999998765443344 55543
No 141
>PLN02954 phosphoserine phosphatase
Probab=66.83 E-value=11 Score=39.60 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=40.6
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCC-ceeeeeee
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKG-VLFAGRVI 1006 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g-~LF~~RIy 1006 (1218)
..++||+.+||+.+.+ .+.++|-|++.+.|++.+++.+.-.. .+|..++.
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~ 134 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQIL 134 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEE
Confidence 5688999999999975 58999999999999999999876432 36665443
No 142
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=66.61 E-value=23 Score=38.39 Aligned_cols=108 Identities=22% Similarity=0.285 Sum_probs=65.6
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHh-ccceEEEEcC-
Q 000938 904 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTM- 981 (1218)
Q Consensus 904 KLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLS-k~YEIVIFTA- 981 (1218)
.++|+||.||||+--.. +..+.+ . -..+.||+.+=|..+. ..|-++|+|+
T Consensus 5 ~k~lflDRDGtin~d~~-----~yv~~~------~-----------------~~~~~~g~i~al~~l~~~gy~lVvvTNQ 56 (181)
T COG0241 5 QKALFLDRDGTINIDKG-----DYVDSL------D-----------------DFQFIPGVIPALLKLQRAGYKLVVVTNQ 56 (181)
T ss_pred CcEEEEcCCCceecCCC-----cccCcH------H-----------------HhccCccHHHHHHHHHhCCCeEEEEECC
Confidence 67999999999994321 010000 0 1457899999999986 5699999999
Q ss_pred ---CcH--------HHHHHHHHHHcCCCceeeeeeeecC---CCCCCCCCCCCCCcccccccc---cCCC-CcEEEEeCC
Q 000938 982 ---GNK--------LYATEMAKVLDPKGVLFAGRVISRG---DDGDPFDGDERVPKSKDLEGV---LGME-SAVVIIDDS 1043 (1218)
Q Consensus 982 ---Gtr--------eYAd~VLdiLDP~g~LF~~RIySRD---dc~~~~dG~Er~~yiKDLsrV---LGRD-srVVIVDDs 1043 (1218)
++. .+-..|..+|--.|.-|.+.+|+.+ +.|.+.+ +..+=|..+ ++.+ .+.++|=|+
T Consensus 57 sGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRK-----P~~gm~~~~~~~~~iD~~~s~~VGD~ 131 (181)
T COG0241 57 SGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRK-----PKPGMLLSALKEYNIDLSRSYVVGDR 131 (181)
T ss_pred CCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccC-----CChHHHHHHHHHhCCCccceEEecCc
Confidence 222 2333466677777777787666543 1123332 222222222 2345 778888888
Q ss_pred C
Q 000938 1044 V 1044 (1218)
Q Consensus 1044 p 1044 (1218)
.
T Consensus 132 ~ 132 (181)
T COG0241 132 L 132 (181)
T ss_pred H
Confidence 5
No 143
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=65.21 E-value=12 Score=38.89 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=24.1
Q ss_pred ecCCHHHHHHHHhc-cceEEEEcCCcHHHHH
Q 000938 959 LRPGIWTFLERASK-LFEMHLYTMGNKLYAT 988 (1218)
Q Consensus 959 lRPGLdEFLeeLSk-~YEIVIFTAGtreYAd 988 (1218)
..|++.++++++.+ -|.+++.|.....-+.
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~ 58 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQAD 58 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHH
Confidence 47999999999885 5888888887766665
No 144
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=64.23 E-value=9.5 Score=42.41 Aligned_cols=60 Identities=18% Similarity=0.121 Sum_probs=41.1
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhc--cceEEEEc
Q 000938 903 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK--LFEMHLYT 980 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk--~YEIVIFT 980 (1218)
.++.|++|+||||+.... +|.. ..+-|.+.+-|+.|.+ ...++|.|
T Consensus 13 ~~~li~~D~DGTLl~~~~----~p~~----------------------------~~i~~~~~~~L~~L~~~~g~~v~i~S 60 (266)
T PRK10187 13 ANYAWFFDLDGTLAEIKP----HPDQ----------------------------VVVPDNILQGLQLLATANDGALALIS 60 (266)
T ss_pred CCEEEEEecCCCCCCCCC----Cccc----------------------------ccCCHHHHHHHHHHHhCCCCcEEEEe
Confidence 368899999999997642 2210 1234778888888876 46778887
Q ss_pred CCcHHHHHHHHHHH
Q 000938 981 MGNKLYATEMAKVL 994 (1218)
Q Consensus 981 AGtreYAd~VLdiL 994 (1218)
--...-+..+++.+
T Consensus 61 GR~~~~~~~~~~~~ 74 (266)
T PRK10187 61 GRSMVELDALAKPY 74 (266)
T ss_pred CCCHHHHHHhcCcc
Confidence 77777666665544
No 145
>PRK10976 putative hydrolase; Provisional
Probab=64.20 E-value=14 Score=39.95 Aligned_cols=15 Identities=40% Similarity=0.483 Sum_probs=13.0
Q ss_pred eEEEEeCCCceeecc
Q 000938 905 LCLVLDLDHTLLNSA 919 (1218)
Q Consensus 905 LTLVLDLDETLIHSs 919 (1218)
+.+++||||||++..
T Consensus 3 kli~~DlDGTLl~~~ 17 (266)
T PRK10976 3 QVVASDLDGTLLSPD 17 (266)
T ss_pred eEEEEeCCCCCcCCC
Confidence 578999999999764
No 146
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=62.96 E-value=28 Score=36.57 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=38.6
Q ss_pred ccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEeCCCC
Q 000938 972 KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 1045 (1218)
Q Consensus 972 k~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-srVVIVDDspd 1045 (1218)
+.++++|.|.....++..+++.|.-.. +|.. +.. .. ..++.+..-+|.. +.+++|-|+..
T Consensus 63 ~Gi~v~I~T~~~~~~v~~~l~~lgl~~-~f~g-------~~~--k~----~~l~~~~~~~gl~~~ev~~VGDs~~ 123 (183)
T PRK09484 63 SGIEVAIITGRKSKLVEDRMTTLGITH-LYQG-------QSN--KL----IAFSDLLEKLAIAPEQVAYIGDDLI 123 (183)
T ss_pred CCCEEEEEeCCCcHHHHHHHHHcCCce-eecC-------CCc--HH----HHHHHHHHHhCCCHHHEEEECCCHH
Confidence 679999999999999999999876432 3321 100 00 1223332345665 78999988864
No 147
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=62.80 E-value=8.2 Score=38.93 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=51.1
Q ss_pred EEecCCHHHHHHHHh-ccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-
Q 000938 957 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1034 (1218)
Q Consensus 957 VKlRPGLdEFLeeLS-k~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD- 1034 (1218)
+.+.||+.++|+.|. ..+.+.|-|++. .+..+++.+.-.. +|.. ++..++-. ..+. .+..+.+-++ .++.+
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~-~f~~-~~~~~~~~-~~kp-~p~~~~~~~~-~~~~~~ 158 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLID-YFDA-IVDPAEIK-KGKP-DPEIFLAAAE-GLGVSP 158 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHh-hCcE-EEehhhcC-CCCC-ChHHHHHHHH-HcCCCH
Confidence 467899999999997 459999999864 3566777765543 6754 55433211 1111 1112233333 34655
Q ss_pred CcEEEEeCCCC
Q 000938 1035 SAVVIIDDSVR 1045 (1218)
Q Consensus 1035 srVVIVDDspd 1045 (1218)
+.+|+|+|++.
T Consensus 159 ~~~v~vgD~~~ 169 (185)
T TIGR01990 159 SECIGIEDAQA 169 (185)
T ss_pred HHeEEEecCHH
Confidence 78999999964
No 148
>PLN03017 trehalose-phosphatase
Probab=62.63 E-value=12 Score=44.32 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=45.8
Q ss_pred hhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhccceE
Q 000938 897 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEM 976 (1218)
Q Consensus 897 ~rLLs~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~YEI 976 (1218)
......+++.|+||+||||+--.. +|. ....-|.+.+-|++|++.+.+
T Consensus 104 ~~~~~~k~~llflD~DGTL~Piv~----~p~----------------------------~a~i~~~~~~aL~~La~~~~v 151 (366)
T PLN03017 104 MEASRGKQIVMFLDYDGTLSPIVD----DPD----------------------------KAFMSSKMRRTVKKLAKCFPT 151 (366)
T ss_pred HHHhcCCCeEEEEecCCcCcCCcC----Ccc----------------------------cccCCHHHHHHHHHHhcCCcE
Confidence 345678899999999999993221 111 123457788889999999999
Q ss_pred EEEcCCcHHHHHHHH
Q 000938 977 HLYTMGNKLYATEMA 991 (1218)
Q Consensus 977 VIFTAGtreYAd~VL 991 (1218)
+|-|--...-+..++
T Consensus 152 aIvSGR~~~~l~~~~ 166 (366)
T PLN03017 152 AIVTGRCIDKVYNFV 166 (366)
T ss_pred EEEeCCCHHHHHHhh
Confidence 999887777766664
No 149
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=61.72 E-value=13 Score=39.80 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=44.5
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhccc-e--
Q 000938 899 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLF-E-- 975 (1218)
Q Consensus 899 LLs~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~Y-E-- 975 (1218)
|...+=..||+|+|+||+.-.. -.+-|.+.+.|+++.+.| +
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~------------------------------------~~i~~~~~~~~~~l~~~~~~~~ 79 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYE------------------------------------DEIPPEYAEWLNELKKQFGKDR 79 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCc------------------------------------CcCCHHHHHHHHHHHHHCCCCe
Confidence 3446778999999999984421 114466778888888765 3
Q ss_pred EEEEcCC-------cHHHHHHHHHHHc
Q 000938 976 MHLYTMG-------NKLYATEMAKVLD 995 (1218)
Q Consensus 976 IVIFTAG-------treYAd~VLdiLD 995 (1218)
|+|++++ ...-|..+-+.|.
T Consensus 80 v~IvSNsaGs~~d~~~~~a~~~~~~lg 106 (168)
T PF09419_consen 80 VLIVSNSAGSSDDPDGERAEALEKALG 106 (168)
T ss_pred EEEEECCCCcccCccHHHHHHHHHhhC
Confidence 9999998 3666777888777
No 150
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=61.70 E-value=13 Score=41.13 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=16.8
Q ss_pred CCHHHHHHHHhc-cceEEEEcCCc
Q 000938 961 PGIWTFLERASK-LFEMHLYTMGN 983 (1218)
Q Consensus 961 PGLdEFLeeLSk-~YEIVIFTAGt 983 (1218)
||..++|+++.+ ...+++.|+..
T Consensus 21 ~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 21 PGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCC
Confidence 677888888774 56788888743
No 151
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=61.20 E-value=2.7 Score=42.25 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=52.6
Q ss_pred EEecCCHHHHHHHHhccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-C
Q 000938 957 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1035 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-s 1035 (1218)
+..+||+.++|+. +.|.|++.+.|...+++.+.-.. +|.. +++.++.. ..+++ +..|.+=++ .+|.+ +
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~~-~fd~-v~~~~~~~-~~KP~-p~~f~~~~~-~~~~~p~ 157 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLPW-YFDR-AFSVDTVR-AYKPD-PVVYELVFD-TVGLPPD 157 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCHH-HHhh-hccHhhcC-CCCCC-HHHHHHHHH-HHCCCHH
Confidence 5689999999994 78999999999999998876443 6764 66544322 12221 112333444 35666 8
Q ss_pred cEEEEeCCC
Q 000938 1036 AVVIIDDSV 1044 (1218)
Q Consensus 1036 rVVIVDDsp 1044 (1218)
.+|+|+|++
T Consensus 158 ~~l~vgD~~ 166 (175)
T TIGR01493 158 RVLMVAAHQ 166 (175)
T ss_pred HeEeEecCh
Confidence 899999995
No 152
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=60.52 E-value=32 Score=39.55 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHh-ccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecC
Q 000938 960 RPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1009 (1218)
Q Consensus 960 RPGLdEFLeeLS-k~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRD 1009 (1218)
=|+..+|++++. .-+.|++.|.-....-..=++.|--.|--.-.+++=|+
T Consensus 147 lp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~ 197 (275)
T TIGR01680 147 LPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKD 197 (275)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecC
Confidence 478899999986 57999999999887766666777666621223555553
No 153
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=57.67 E-value=16 Score=39.58 Aligned_cols=15 Identities=53% Similarity=0.786 Sum_probs=12.8
Q ss_pred CeEEEEeCCCceeec
Q 000938 904 KLCLVLDLDHTLLNS 918 (1218)
Q Consensus 904 KLTLVLDLDETLIHS 918 (1218)
++.++.|||+||+..
T Consensus 1 ~~li~tDlDGTLl~~ 15 (249)
T TIGR01485 1 RLLLVSDLDNTLVDH 15 (249)
T ss_pred CeEEEEcCCCcCcCC
Confidence 468899999999964
No 154
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=56.58 E-value=14 Score=48.88 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=58.7
Q ss_pred ecCCHHHHHHHHh-ccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-Cc
Q 000938 959 LRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SA 1036 (1218)
Q Consensus 959 lRPGLdEFLeeLS-k~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-sr 1036 (1218)
+.||+.+||++|. +.|.+.|.|++.+.+++.+++.+.-...+|.. +++.+++. ..+.+ +..+.+-++ .+|.. +.
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~-iv~~~~~~-~~KP~-Pe~~~~a~~-~lgv~p~e 237 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDA-IVSADAFE-NLKPA-PDIFLAAAK-ILGVPTSE 237 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCE-EEECcccc-cCCCC-HHHHHHHHH-HcCcCccc
Confidence 5799999999997 46999999999999999999987654346764 66554432 11211 112333343 45665 78
Q ss_pred EEEEeCCCCcc
Q 000938 1037 VVIIDDSVRVW 1047 (1218)
Q Consensus 1037 VVIVDDspdVW 1047 (1218)
+|+|+|++.-.
T Consensus 238 ~v~IgDs~~Di 248 (1057)
T PLN02919 238 CVVIEDALAGV 248 (1057)
T ss_pred EEEEcCCHHHH
Confidence 99999997443
No 155
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=56.44 E-value=17 Score=37.59 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=41.5
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeee
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 1006 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIy 1006 (1218)
..++|++.++|+.+.+ .+.++|.|++...|+..+++.+.-+. +|..++.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~~l~ 135 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AIGTRLE 135 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEecceE
Confidence 4689999999999875 68999999999999999999887654 6666554
No 156
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=55.89 E-value=19 Score=39.48 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=12.2
Q ss_pred EEEEeCCCceeecc
Q 000938 906 CLVLDLDHTLLNSA 919 (1218)
Q Consensus 906 TLVLDLDETLIHSs 919 (1218)
.+++|||+||++..
T Consensus 3 ~~~~D~DGtl~~~~ 16 (249)
T TIGR01457 3 GYLIDLDGTMYKGK 16 (249)
T ss_pred EEEEeCCCceEcCC
Confidence 68999999999764
No 157
>PLN02811 hydrolase
Probab=55.56 E-value=12 Score=39.73 Aligned_cols=86 Identities=10% Similarity=0.023 Sum_probs=52.5
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHH-HHHHHcCCCceeeeeeeecC--CCCCCCCCCCCCCcccccccccC
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATE-MAKVLDPKGVLFAGRVISRG--DDGDPFDGDERVPKSKDLEGVLG 1032 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~-VLdiLDP~g~LF~~RIySRD--dc~~~~dG~Er~~yiKDLsrVLG 1032 (1218)
+.+.||+.+||+.|.+ .|.+.|-|++.+.+... +.+...-. .+|.. +++.+ ++.. .+. ++..|.+=+.+ ++
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~~-i~~~~~~~~~~-~KP-~p~~~~~a~~~-~~ 151 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMHH-VVTGDDPEVKQ-GKP-APDIFLAAARR-FE 151 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCCE-EEECChhhccC-CCC-CcHHHHHHHHH-hC
Confidence 5678999999999975 69999999999876654 33222111 25654 55555 3321 111 11123333442 33
Q ss_pred ---CC-CcEEEEeCCCCcc
Q 000938 1033 ---ME-SAVVIIDDSVRVW 1047 (1218)
Q Consensus 1033 ---RD-srVVIVDDspdVW 1047 (1218)
.. +.+|+|+|+..-.
T Consensus 152 ~~~~~~~~~v~IgDs~~di 170 (220)
T PLN02811 152 DGPVDPGKVLVFEDAPSGV 170 (220)
T ss_pred CCCCCccceEEEeccHhhH
Confidence 54 7899999998544
No 158
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.43 E-value=6.4 Score=48.11 Aligned_cols=116 Identities=21% Similarity=0.231 Sum_probs=60.5
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeecc---ceEEEEecCCHHHHHHHHhc-cc
Q 000938 899 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPH---MGMWTKLRPGIWTFLERASK-LF 974 (1218)
Q Consensus 899 LLs~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~---~~~YVKlRPGLdEFLeeLSk-~Y 974 (1218)
+....|++||||||+||.--.... |-. .-+++.. ..-| =-+++|.+.+.+ -+
T Consensus 217 ~~g~~kK~LVLDLDNTLWGGVIGe--dGv------------------~GI~Ls~~~~G~~f----k~fQ~~Ik~l~kqGV 272 (574)
T COG3882 217 MSGKSKKALVLDLDNTLWGGVIGE--DGV------------------DGIRLSNSAEGEAF----KTFQNFIKGLKKQGV 272 (574)
T ss_pred hhCcccceEEEecCCccccccccc--ccc------------------cceeecCCCCchhH----HHHHHHHHHHHhccE
Confidence 346789999999999998665311 000 0011100 0000 024556666664 46
Q ss_pred eEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCC----CCCCCCCCCCCCcccccccccCCC-CcEEEEeCCCCccc
Q 000938 975 EMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGD----DGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWP 1048 (1218)
Q Consensus 975 EIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDd----c~~~~dG~Er~~yiKDLsrVLGRD-srVVIVDDspdVW~ 1048 (1218)
=+.|++..+..-|.+|... -| |-|+..++ .++|-+ ....++-+.+-|+-. ...|.|||+|.--.
T Consensus 273 lLav~SKN~~~da~evF~k-hp------~MiLkeedfa~~~iNW~~---K~eNirkIAkklNlg~dSmvFiDD~p~ErE 341 (574)
T COG3882 273 LLAVCSKNTEKDAKEVFRK-HP------DMILKEEDFAVFQINWDP---KAENIRKIAKKLNLGLDSMVFIDDNPAERE 341 (574)
T ss_pred EEEEecCCchhhHHHHHhh-CC------CeEeeHhhhhhheecCCc---chhhHHHHHHHhCCCccceEEecCCHHHHH
Confidence 6788888888888887752 22 22443332 112211 001122222234443 56789999986543
No 159
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=54.80 E-value=8.6 Score=41.82 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=38.3
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhccceEEEEcCC
Q 000938 903 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMG 982 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~YEIVIFTAG 982 (1218)
+|..|+||+|+||+-... +|. ..+.-|++.+.|+.|++....+||=.+
T Consensus 2 ~~~~l~lD~DGTL~~~~~----~p~----------------------------~~~~~~~~~~~L~~L~~~~~~~v~ivS 49 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVP----DPD----------------------------AAVVSDRLLTILQKLAARPHNAIWIIS 49 (244)
T ss_pred CcEEEEEecCccccCCcC----CCc----------------------------ccCCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 678999999999995421 221 133558899999999987655433333
Q ss_pred cHHHHHHHHHHHcCC
Q 000938 983 NKLYATEMAKVLDPK 997 (1218)
Q Consensus 983 treYAd~VLdiLDP~ 997 (1218)
.+.+. .+...+.+.
T Consensus 50 GR~~~-~~~~~~~~~ 63 (244)
T TIGR00685 50 GRKFL-EKWLGVKLP 63 (244)
T ss_pred CCChh-hccccCCCC
Confidence 33443 333444443
No 160
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=53.81 E-value=18 Score=41.18 Aligned_cols=55 Identities=20% Similarity=0.165 Sum_probs=37.0
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhcc-ceEEEEc
Q 000938 902 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYT 980 (1218)
Q Consensus 902 ~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~-YEIVIFT 980 (1218)
.+.-+..+|||+||++... .=||..+||+++.+. --+++.|
T Consensus 6 ~~y~~~l~DlDGvl~~G~~--------------------------------------~ipga~e~l~~L~~~g~~~iflT 47 (269)
T COG0647 6 DKYDGFLFDLDGVLYRGNE--------------------------------------AIPGAAEALKRLKAAGKPVIFLT 47 (269)
T ss_pred hhcCEEEEcCcCceEeCCc--------------------------------------cCchHHHHHHHHHHcCCeEEEEe
Confidence 3456789999999998742 127778888887755 6677777
Q ss_pred CCcHHHHHHHHHHH
Q 000938 981 MGNKLYATEMAKVL 994 (1218)
Q Consensus 981 AGtreYAd~VLdiL 994 (1218)
++...-.+.+...|
T Consensus 48 Nn~~~s~~~~~~~L 61 (269)
T COG0647 48 NNSTRSREVVAARL 61 (269)
T ss_pred CCCCCCHHHHHHHH
Confidence 77655444433333
No 161
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=52.21 E-value=16 Score=42.16 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=55.0
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecC------CCCCCCCCCCCCCccccccc
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG------DDGDPFDGDERVPKSKDLEG 1029 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRD------dc~~~~dG~Er~~yiKDLsr 1029 (1218)
+.++||+.+||+.+.+ .|.+.|.|.|...|++.+++.|+-.. +|.+++--.+ .++....+......++-+..
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~ 258 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA-AVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQ 258 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe-EEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHH
Confidence 6789999999999985 49999999999999999999876543 3333221110 01111111101112233333
Q ss_pred ccCCC-CcEEEEeCCCC
Q 000938 1030 VLGME-SAVVIIDDSVR 1045 (1218)
Q Consensus 1030 VLGRD-srVVIVDDspd 1045 (1218)
-+|.+ +.+|.|-|...
T Consensus 259 ~lgi~~~qtIaVGDg~N 275 (322)
T PRK11133 259 EYEIPLAQTVAIGDGAN 275 (322)
T ss_pred HcCCChhhEEEEECCHH
Confidence 45655 78999999863
No 162
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=51.84 E-value=13 Score=40.89 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=48.5
Q ss_pred cCCCeEEEEeCCCceeecccCC--------CCCCc-hhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHh
Q 000938 901 SARKLCLVLDLDHTLLNSAKFH--------EVDPV-HDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS 971 (1218)
Q Consensus 901 s~kKLTLVLDLDETLIHSs~~~--------evdP~-~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLS 971 (1218)
..++..+||||||||+....+. .+++. .++|+. ... -..=|+..+|++.+.
T Consensus 69 ~~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~-----------------~~~---~~aip~a~~l~~~~~ 128 (229)
T PF03767_consen 69 ADKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVA-----------------SGK---APAIPGALELYNYAR 128 (229)
T ss_dssp HTSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHH-----------------CTG---GEEETTHHHHHHHHH
T ss_pred cCCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHh-----------------ccc---CcccHHHHHHHHHHH
Confidence 4899999999999999654210 00110 011111 011 145588999999987
Q ss_pred c-cceEEEEcCCcHHHHHHHHHHHcCCC
Q 000938 972 K-LFEMHLYTMGNKLYATEMAKVLDPKG 998 (1218)
Q Consensus 972 k-~YEIVIFTAGtreYAd~VLdiLDP~g 998 (1218)
+ .++|++-|.-....-+.-++.|.-.|
T Consensus 129 ~~G~~V~~iT~R~~~~r~~T~~nL~~~G 156 (229)
T PF03767_consen 129 SRGVKVFFITGRPESQREATEKNLKKAG 156 (229)
T ss_dssp HTTEEEEEEEEEETTCHHHHHHHHHHHT
T ss_pred HCCCeEEEEecCCchhHHHHHHHHHHcC
Confidence 5 59999999877775555555555444
No 163
>PLN02423 phosphomannomutase
Probab=51.28 E-value=27 Score=38.43 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=13.3
Q ss_pred CCeEEEEeCCCceeecc
Q 000938 903 RKLCLVLDLDHTLLNSA 919 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs 919 (1218)
-|..+++||||||+...
T Consensus 6 ~~~i~~~D~DGTLl~~~ 22 (245)
T PLN02423 6 PGVIALFDVDGTLTAPR 22 (245)
T ss_pred cceEEEEeccCCCcCCC
Confidence 45566699999999764
No 164
>PLN02887 hydrolase family protein
Probab=50.31 E-value=27 Score=43.65 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=38.5
Q ss_pred hcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHh-ccceEEE
Q 000938 900 FSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHL 978 (1218)
Q Consensus 900 Ls~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLS-k~YEIVI 978 (1218)
+..+.+.+++||||||++... ++.+ ...+-|+++. +.+.++|
T Consensus 304 ~~~~iKLIa~DLDGTLLn~d~--~Is~-----------------------------------~t~eAI~kl~ekGi~~vI 346 (580)
T PLN02887 304 YKPKFSYIFCDMDGTLLNSKS--QISE-----------------------------------TNAKALKEALSRGVKVVI 346 (580)
T ss_pred hccCccEEEEeCCCCCCCCCC--ccCH-----------------------------------HHHHHHHHHHHCCCeEEE
Confidence 445677899999999997642 1222 2233455544 4477777
Q ss_pred EcCCcHHHHHHHHHHHcC
Q 000938 979 YTMGNKLYATEMAKVLDP 996 (1218)
Q Consensus 979 FTAGtreYAd~VLdiLDP 996 (1218)
-|.-...-+..+++.|+.
T Consensus 347 ATGR~~~~i~~~l~~L~l 364 (580)
T PLN02887 347 ATGKARPAVIDILKMVDL 364 (580)
T ss_pred EcCCCHHHHHHHHHHhCc
Confidence 777777767777776654
No 165
>PLN02151 trehalose-phosphatase
Probab=50.21 E-value=28 Score=41.20 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=46.7
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhccceEEE
Q 000938 899 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHL 978 (1218)
Q Consensus 899 LLs~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~YEIVI 978 (1218)
+...+++.|+||+|+||+--.. +|. -+..-|.+.+-|+.|++.+.++|
T Consensus 93 ~~~~~~~ll~lDyDGTL~PIv~----~P~----------------------------~A~~~~~~~~aL~~La~~~~vaI 140 (354)
T PLN02151 93 KSEGKQIVMFLDYDGTLSPIVD----DPD----------------------------RAFMSKKMRNTVRKLAKCFPTAI 140 (354)
T ss_pred hhcCCceEEEEecCccCCCCCC----Ccc----------------------------cccCCHHHHHHHHHHhcCCCEEE
Confidence 4567899999999999993221 121 24466899999999999999999
Q ss_pred EcCCcHHHHHHHHH
Q 000938 979 YTMGNKLYATEMAK 992 (1218)
Q Consensus 979 FTAGtreYAd~VLd 992 (1218)
-|--...-.+.++.
T Consensus 141 vSGR~~~~l~~~~~ 154 (354)
T PLN02151 141 VSGRCREKVSSFVK 154 (354)
T ss_pred EECCCHHHHHHHcC
Confidence 98877776666553
No 166
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=49.97 E-value=31 Score=38.18 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=35.2
Q ss_pred EEecCCHHHHHHHHhcc-ceEEEEcCCcHHHHHHHHHHHc
Q 000938 957 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLD 995 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk~-YEIVIFTAGtreYAd~VLdiLD 995 (1218)
+++|||.++|.+++.++ --++|-++|+..|..+++..|=
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence 88999999999999865 7899999999999999998654
No 167
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=48.82 E-value=36 Score=39.66 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=22.4
Q ss_pred HHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCC
Q 000938 963 IWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPK 997 (1218)
Q Consensus 963 LdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~ 997 (1218)
..+-|+++.+ ...|++.|.-+..=...+.+.|.-.
T Consensus 23 a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 23 ARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 4445666653 4777788777666666666666543
No 168
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=48.33 E-value=21 Score=38.90 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=19.8
Q ss_pred CCHHHHHHHHhc-cceEEEEcCCc----HHHHHHHHH
Q 000938 961 PGIWTFLERASK-LFEMHLYTMGN----KLYATEMAK 992 (1218)
Q Consensus 961 PGLdEFLeeLSk-~YEIVIFTAGt----reYAd~VLd 992 (1218)
|+..++|+.+.+ .+.+++.|+.+ ..|++.+.+
T Consensus 17 ~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~ 53 (236)
T TIGR01460 17 PGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSS 53 (236)
T ss_pred cCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 466777777764 37777776444 455555555
No 169
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=48.08 E-value=35 Score=43.67 Aligned_cols=59 Identities=20% Similarity=0.100 Sum_probs=40.2
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHh-ccceEEEEc
Q 000938 902 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYT 980 (1218)
Q Consensus 902 ~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLS-k~YEIVIFT 980 (1218)
.+++.+++|||+||++... ++. +...+-|+++. +.+.++|.|
T Consensus 414 ~~~KLIfsDLDGTLLd~d~-----------------------------------~i~--~~t~eAL~~L~ekGI~~VIAT 456 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLT-----------------------------------YSY--STALDALRLLKDKELPLVFCS 456 (694)
T ss_pred ceeeEEEEECcCCCcCCCC-----------------------------------ccC--HHHHHHHHHHHHcCCeEEEEe
Confidence 5677899999999997632 011 11234455555 347888888
Q ss_pred CCcHHHHHHHHHHHcCC
Q 000938 981 MGNKLYATEMAKVLDPK 997 (1218)
Q Consensus 981 AGtreYAd~VLdiLDP~ 997 (1218)
.-+...+..+++.|+..
T Consensus 457 GRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 457 AKTMGEQDLYRNELGIK 473 (694)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 88888888888877643
No 170
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=45.65 E-value=16 Score=40.62 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=17.7
Q ss_pred hhhhhcCCCeEEEEeCCCceeecc
Q 000938 896 QKKMFSARKLCLVLDLDHTLLNSA 919 (1218)
Q Consensus 896 q~rLLs~kKLTLVLDLDETLIHSs 919 (1218)
|++ +...-+.+++||||||+.|.
T Consensus 17 ~~~-~~~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 17 QHR-LGCGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred HHH-hcCCceEEEEeCCCceeCCc
Confidence 444 45566679999999999984
No 171
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=44.94 E-value=22 Score=46.42 Aligned_cols=98 Identities=13% Similarity=0.206 Sum_probs=60.5
Q ss_pred chhhHHHHHHHhhhhccCceeeeeccccCC---CCCC--CCchHHHHHHHhCCEEecccC------------CCccEEEe
Q 000938 1113 DVDVRNILAAEQRKILAGCRIVFSRVFPVG---EANP--HLHPLWQTAEQFGAVCTKHID------------DQVTHVVA 1175 (1218)
Q Consensus 1113 ~~DVR~IL~eiRrqILkGCvIvFSGIfP~g---~~nP--er~~LwkLAeqLGAtVssdVd------------~kVTHLVA 1175 (1218)
..+-..|+++.+..-|++-++...+.+... ...| .--.+|.-+...|+.-.-++. .-.-||++
T Consensus 1045 s~l~~~i~~fn~~~nLkd~~l~vk~~l~~~~v~q~gp~~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d 1124 (1176)
T KOG3548|consen 1045 SQLMPAIEPFNPSENLKDTTLYVKSTLSAREVTQTGPGGTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVD 1124 (1176)
T ss_pred cccccCccccCchhhccceeeEeeccccceeEEEecCCcchHHHHHHHHHhhchheecccccccccccccccceeEEEec
Confidence 444445555555666666666655542110 0011 123577777777776655542 12346666
Q ss_pred CCCCCHHHHHHHHcCCcEEcHHHHHHHHHhcccCC
Q 000938 1176 NSLGTDKVNWALSTGRFVVHPGWVEASALLYRRAN 1210 (1218)
Q Consensus 1176 ss~gTeKVk~Alk~GIkIVSPdWLedCl~~wkRVD 1210 (1218)
...++.-.+.|-..++++|+++||.+|+-..++..
T Consensus 1125 ~~~~~svmk~ad~l~~pvvs~EWvIQtiI~~~~i~ 1159 (1176)
T KOG3548|consen 1125 GTFRDSVMKYADTLGAPVVSSEWVIQTIILGKAIE 1159 (1176)
T ss_pred CccHHHHHHHHHHhCCCccChhHhheeeeccccCC
Confidence 66666667778888999999999999998776654
No 172
>PLN02580 trehalose-phosphatase
Probab=44.59 E-value=36 Score=40.72 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=48.1
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhccceEE
Q 000938 898 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMH 977 (1218)
Q Consensus 898 rLLs~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~YEIV 977 (1218)
.....+++.|+||.||||.--.. +|. -+..-|.+.+-|+.|++.+-++
T Consensus 113 ~~~~~k~~~LfLDyDGTLaPIv~----~Pd----------------------------~A~~s~~~~~aL~~La~~~~VA 160 (384)
T PLN02580 113 NFAKGKKIALFLDYDGTLSPIVD----DPD----------------------------RALMSDAMRSAVKNVAKYFPTA 160 (384)
T ss_pred HHhhcCCeEEEEecCCccCCCCC----Ccc----------------------------cccCCHHHHHHHHHHhhCCCEE
Confidence 34567899999999999983321 221 1446689999999999999999
Q ss_pred EEcCCcHHHHHHHHH
Q 000938 978 LYTMGNKLYATEMAK 992 (1218)
Q Consensus 978 IFTAGtreYAd~VLd 992 (1218)
|-|--...-.+..+.
T Consensus 161 IVSGR~~~~L~~~l~ 175 (384)
T PLN02580 161 IISGRSRDKVYELVG 175 (384)
T ss_pred EEeCCCHHHHHHHhC
Confidence 999888877666554
No 173
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=43.26 E-value=13 Score=38.63 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=12.5
Q ss_pred EEEEeCCCceeecc
Q 000938 906 CLVLDLDHTLLNSA 919 (1218)
Q Consensus 906 TLVLDLDETLIHSs 919 (1218)
.+++|||||||.|.
T Consensus 2 ~viFD~DGTLiDs~ 15 (197)
T TIGR01548 2 ALVLDMDGVMADVS 15 (197)
T ss_pred ceEEecCceEEech
Confidence 47999999999985
No 174
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=42.88 E-value=14 Score=37.65 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=26.7
Q ss_pred CCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHHcCCcEEc
Q 000938 1145 NPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVH 1195 (1218)
Q Consensus 1145 nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~gTeKVk~Alk~GIkIVS 1195 (1218)
.|+...+...++.+|.. -.|+|.-.....=+..|++.|++.|-
T Consensus 142 KP~p~~~~~~~~~~~~~--------~~~~l~igDs~~di~aA~~aG~~~i~ 184 (188)
T PRK10725 142 KPAPDTFLRCAQLMGVQ--------PTQCVVFEDADFGIQAARAAGMDAVD 184 (188)
T ss_pred CCChHHHHHHHHHcCCC--------HHHeEEEeccHhhHHHHHHCCCEEEe
Confidence 55556677778888742 23344444344557778888887663
No 175
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=42.81 E-value=43 Score=36.48 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=43.0
Q ss_pred EEEecCCHHHHHHHHhcc-ceEEEEcCCcHHHHHHHHHHHcCCCceeeeeee
Q 000938 956 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 1006 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLSk~-YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIy 1006 (1218)
+++++||..+.++.+.+. +.++|.|+|-..|+++|.+.|.-+. .+.+++.
T Consensus 75 ~~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l~ 125 (212)
T COG0560 75 FLRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANELE 125 (212)
T ss_pred cCcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEEE
Confidence 388999999999999865 9999999999999999999998775 4555444
No 176
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=42.64 E-value=13 Score=39.02 Aligned_cols=79 Identities=23% Similarity=0.189 Sum_probs=43.7
Q ss_pred EEecCCHHHHHHHHhcc-ceEEEEcCCcHH-H---HHHHHHHHcCC-CceeeeeeeecCCCCCCCCCCCCCCcccccccc
Q 000938 957 TKLRPGIWTFLERASKL-FEMHLYTMGNKL-Y---ATEMAKVLDPK-GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGV 1030 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk~-YEIVIFTAGtre-Y---Ad~VLdiLDP~-g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrV 1030 (1218)
...=||+.+.|++|.+. |++++.|+.... | +..=.+.|+-. +.++.++++--. -|.+
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~--------------~K~~--- 134 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTG--------------DKTL--- 134 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEES--------------SGGG---
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEec--------------CCCe---
Confidence 56779999999999987 577777776655 2 34445666644 223333333211 1332
Q ss_pred cCCCCcEEEEeCCCCccccCcCCcc
Q 000938 1031 LGMESAVVIIDDSVRVWPHNKLNLI 1055 (1218)
Q Consensus 1031 LGRDsrVVIVDDspdVW~~qpdN~I 1055 (1218)
++.| |+|||++.....-...++
T Consensus 135 v~~D---vlIDD~~~n~~~~~~~g~ 156 (191)
T PF06941_consen 135 VGGD---VLIDDRPHNLEQFANAGI 156 (191)
T ss_dssp C--S---EEEESSSHHHSS-SSESS
T ss_pred Eecc---EEecCChHHHHhccCCCc
Confidence 2333 789999987654444443
No 177
>PHA02597 30.2 hypothetical protein; Provisional
Probab=42.11 E-value=15 Score=38.09 Aligned_cols=43 Identities=19% Similarity=0.086 Sum_probs=27.4
Q ss_pred chHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHHc--CCcEEcHHHHHH
Q 000938 1149 HPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALST--GRFVVHPGWVEA 1201 (1218)
Q Consensus 1149 ~~LwkLAeqLGAtVssdVd~kVTHLVAss~gTeKVk~Alk~--GIkIVSPdWLed 1201 (1218)
..+...++.+| + .++|.-.....=+..|++. |++.|...|-..
T Consensus 134 ~~~~~a~~~~~--------~--~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~ 178 (197)
T PHA02597 134 KLFIKAKEKYG--------D--RVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER 178 (197)
T ss_pred HHHHHHHHHhC--------C--CcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh
Confidence 34556677787 1 2233333333347788887 999998888765
No 178
>PRK11587 putative phosphatase; Provisional
Probab=41.17 E-value=14 Score=39.08 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.9
Q ss_pred CeEEEEeCCCceeecc
Q 000938 904 KLCLVLDLDHTLLNSA 919 (1218)
Q Consensus 904 KLTLVLDLDETLIHSs 919 (1218)
...+++||||||+.|.
T Consensus 3 ~k~viFDlDGTL~Ds~ 18 (218)
T PRK11587 3 CKGFLFDLDGTLVDSL 18 (218)
T ss_pred CCEEEEcCCCCcCcCH
Confidence 3579999999999985
No 179
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=40.50 E-value=59 Score=34.90 Aligned_cols=83 Identities=19% Similarity=0.291 Sum_probs=57.0
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCccccccc---ccC
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEG---VLG 1032 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsr---VLG 1032 (1218)
...-||+.+.|..+.+ .|.+.|.|+.....++.+++.++-.. +|.. ++.-++. ...+ +.-..|.. -+|
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~~-i~g~~~~-~~~K-----P~P~~l~~~~~~~~ 159 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YFDV-IVGGDDV-PPPK-----PDPEPLLLLLEKLG 159 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccce-EEcCCCC-CCCC-----cCHHHHHHHHHHhC
Confidence 5678999999999985 68999999999999999999988765 7764 4442211 1111 12122221 234
Q ss_pred CC-CcEEEEeCCCCcc
Q 000938 1033 ME-SAVVIIDDSVRVW 1047 (1218)
Q Consensus 1033 RD-srVVIVDDspdVW 1047 (1218)
.+ +++|+|=|+..=-
T Consensus 160 ~~~~~~l~VGDs~~Di 175 (220)
T COG0546 160 LDPEEALMVGDSLNDI 175 (220)
T ss_pred CChhheEEECCCHHHH
Confidence 44 5899999887533
No 180
>PRK11590 hypothetical protein; Provisional
Probab=40.06 E-value=16 Score=38.77 Aligned_cols=39 Identities=10% Similarity=-0.107 Sum_probs=34.1
Q ss_pred EEecCCHHHHH-HHHh-ccceEEEEcCCcHHHHHHHHHHHc
Q 000938 957 TKLRPGIWTFL-ERAS-KLFEMHLYTMGNKLYATEMAKVLD 995 (1218)
Q Consensus 957 VKlRPGLdEFL-eeLS-k~YEIVIFTAGtreYAd~VLdiLD 995 (1218)
+..+||+.+.| +.+. ..+.++|-|++.+.|+.++++.+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 46799999999 5676 589999999999999999998755
No 181
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=39.04 E-value=59 Score=38.04 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=42.1
Q ss_pred CchhhHHHHHHHhhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccC
Q 000938 1112 DDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHID 1167 (1218)
Q Consensus 1112 ~~~DVR~IL~eiRrqILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd 1167 (1218)
...+++.++..+++.+-++-.++++|-+|.+.......++.+++++.|+.|.-|.+
T Consensus 112 s~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~S 167 (310)
T COG1105 112 SEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTS 167 (310)
T ss_pred CHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECC
Confidence 34567777777777777777799999999886433345688889999999887755
No 182
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=39.04 E-value=16 Score=38.04 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=13.3
Q ss_pred eEEEEeCCCceeecc
Q 000938 905 LCLVLDLDHTLLNSA 919 (1218)
Q Consensus 905 LTLVLDLDETLIHSs 919 (1218)
..+++||||||+.+.
T Consensus 3 ~~viFDlDGTL~ds~ 17 (221)
T TIGR02253 3 KAIFFDLDDTLIDTS 17 (221)
T ss_pred eEEEEeCCCCCcCCC
Confidence 478999999999985
No 183
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=39.00 E-value=43 Score=39.48 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=38.1
Q ss_pred eEEEEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHH-c
Q 000938 954 GMWTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVL-D 995 (1218)
Q Consensus 954 ~~YVKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiL-D 995 (1218)
.-||.+-||+.++|+.+.+ .+.+.|-|++...|++.+++.| +
T Consensus 180 ~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred HHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 3588999999999999975 5899999999999999999997 6
No 184
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=38.24 E-value=16 Score=37.39 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=12.4
Q ss_pred EEEEeCCCceeecc
Q 000938 906 CLVLDLDHTLLNSA 919 (1218)
Q Consensus 906 TLVLDLDETLIHSs 919 (1218)
.+++||||||+.+.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 58999999999875
No 185
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=38.22 E-value=19 Score=37.79 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=13.3
Q ss_pred eEEEEeCCCceeecc
Q 000938 905 LCLVLDLDHTLLNSA 919 (1218)
Q Consensus 905 LTLVLDLDETLIHSs 919 (1218)
.++++||||||+.+.
T Consensus 2 k~iiFD~DGTL~ds~ 16 (220)
T TIGR03351 2 SLVVLDMAGTTVDED 16 (220)
T ss_pred cEEEEecCCCeeccC
Confidence 478999999999986
No 186
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=38.15 E-value=17 Score=38.03 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=13.9
Q ss_pred CeEEEEeCCCceeecc
Q 000938 904 KLCLVLDLDHTLLNSA 919 (1218)
Q Consensus 904 KLTLVLDLDETLIHSs 919 (1218)
...+++||||||+++.
T Consensus 3 ~~~viFD~DGTL~ds~ 18 (214)
T PRK13288 3 INTVLFDLDGTLINTN 18 (214)
T ss_pred ccEEEEeCCCcCccCH
Confidence 3578999999999986
No 187
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=36.97 E-value=83 Score=36.04 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=48.7
Q ss_pred hhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhccce-
Q 000938 897 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFE- 975 (1218)
Q Consensus 897 ~rLLs~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk~YE- 975 (1218)
...+..+|..|+||.|+||++-.. +|. -+..=+++.+.|..|+..+.
T Consensus 11 ~~~~~a~~~~~~lDyDGTl~~i~~----~p~----------------------------~a~~~~~l~~lL~~Las~~~~ 58 (266)
T COG1877 11 EPYLNARKRLLFLDYDGTLTEIVP----HPE----------------------------AAVPDDRLLSLLQDLASDPRN 58 (266)
T ss_pred cccccccceEEEEecccccccccc----Ccc----------------------------ccCCCHHHHHHHHHHHhcCCC
Confidence 345678999999999999998764 221 02244778899999999998
Q ss_pred -EEEEcCCcHHHHHHHHH
Q 000938 976 -MHLYTMGNKLYATEMAK 992 (1218)
Q Consensus 976 -IVIFTAGtreYAd~VLd 992 (1218)
++|.|--...-.+..+.
T Consensus 59 ~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 59 VVAIISGRSLAELERLFG 76 (266)
T ss_pred eEEEEeCCCHHHHHHhcC
Confidence 88888888777666665
No 188
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=35.97 E-value=18 Score=40.20 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=14.0
Q ss_pred CeEEEEeCCCceeecc
Q 000938 904 KLCLVLDLDHTLLNSA 919 (1218)
Q Consensus 904 KLTLVLDLDETLIHSs 919 (1218)
.+.+++|||+||+++.
T Consensus 13 ~k~viFDlDGTL~Ds~ 28 (272)
T PRK13223 13 PRLVMFDLDGTLVDSV 28 (272)
T ss_pred CCEEEEcCCCccccCH
Confidence 3489999999999985
No 189
>PRK11590 hypothetical protein; Provisional
Probab=35.87 E-value=47 Score=35.41 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=14.2
Q ss_pred CCeEEEEeCCCceeecc
Q 000938 903 RKLCLVLDLDHTLLNSA 919 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs 919 (1218)
.+..+++||||||++..
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 56689999999999554
No 190
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=34.92 E-value=22 Score=36.75 Aligned_cols=14 Identities=29% Similarity=0.244 Sum_probs=12.5
Q ss_pred EEEEeCCCceeecc
Q 000938 906 CLVLDLDHTLLNSA 919 (1218)
Q Consensus 906 TLVLDLDETLIHSs 919 (1218)
.+++|||+||+.+.
T Consensus 2 ~viFDlDGTL~d~~ 15 (203)
T TIGR02252 2 LITFDAVGTLLALK 15 (203)
T ss_pred eEEEecCCceeeeC
Confidence 68999999999875
No 191
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=33.86 E-value=20 Score=34.72 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhccccC---CCCchhhHHHHHHHhhh-hccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCC
Q 000938 1094 SLGVIERLHKIFFSHQ---SLDDVDVRNILAAEQRK-ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQ 1169 (1218)
Q Consensus 1094 LLpfLe~IHq~FFs~~---~L~~~DVR~IL~eiRrq-ILkGCvIvFSGIfP~g~~nPer~~LwkLAeqLGAtVssdVd~k 1169 (1218)
+.++|..+.+.-+.-. +.....++.++..+.-. .|. .|+.+.-. +...|+...+.++++.+|. .+.
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~--~i~~~~~~--~~~Kp~~~~~~~~~~~~~~------~p~ 151 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFD--EIISSDDV--GSRKPDPDAYRRALEKLGI------PPE 151 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCS--EEEEGGGS--SSSTTSHHHHHHHHHHHTS------SGG
T ss_pred hhhhhhhcccccceeEEeecCCcccccccccccccccccc--cccccchh--hhhhhHHHHHHHHHHHcCC------Ccc
Confidence 4555666654333221 11234455555544333 233 12233222 2234555556677777753 233
Q ss_pred ccEEEeCCCCCHHHHHHHHcCCcEEc
Q 000938 1170 VTHVVANSLGTDKVNWALSTGRFVVH 1195 (1218)
Q Consensus 1170 VTHLVAss~gTeKVk~Alk~GIkIVS 1195 (1218)
-+-+|-... .-++.|++.|++.|.
T Consensus 152 ~~~~vgD~~--~d~~~A~~~G~~~i~ 175 (176)
T PF13419_consen 152 EILFVGDSP--SDVEAAKEAGIKTIW 175 (176)
T ss_dssp GEEEEESSH--HHHHHHHHTTSEEEE
T ss_pred eEEEEeCCH--HHHHHHHHcCCeEEe
Confidence 333333322 556777888877653
No 192
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=33.66 E-value=20 Score=36.14 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 000938 905 LCLVLDLDHTLLNSA 919 (1218)
Q Consensus 905 LTLVLDLDETLIHSs 919 (1218)
..+++||||||+.+.
T Consensus 2 ~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 2 KAVIFDMDGVIVDTA 16 (185)
T ss_pred CeEEEcCCCcccCCh
Confidence 468999999999885
No 193
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=33.43 E-value=20 Score=38.39 Aligned_cols=15 Identities=53% Similarity=0.738 Sum_probs=13.6
Q ss_pred eEEEEeCCCceeecc
Q 000938 905 LCLVLDLDHTLLNSA 919 (1218)
Q Consensus 905 LTLVLDLDETLIHSs 919 (1218)
..+++||||||+.|.
T Consensus 13 k~viFD~DGTL~Ds~ 27 (229)
T PRK13226 13 RAVLFDLDGTLLDSA 27 (229)
T ss_pred CEEEEcCcCccccCH
Confidence 489999999999986
No 194
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=32.65 E-value=86 Score=32.05 Aligned_cols=42 Identities=26% Similarity=0.268 Sum_probs=38.1
Q ss_pred EEEecCCHHHHHHHHhcc-ceEEEEcCCcHHHHHHHHHHHcCC
Q 000938 956 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPK 997 (1218)
Q Consensus 956 YVKlRPGLdEFLeeLSk~-YEIVIFTAGtreYAd~VLdiLDP~ 997 (1218)
.-.+||++.++|++|.+. +.++|.|......|..+++.|.-.
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~ 167 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF 167 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC
T ss_pred cCcchhhhhhhhhhhhccCcceeeeeccccccccccccccccc
Confidence 457899999999999976 899999999999999999998763
No 195
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=32.58 E-value=18 Score=35.63 Aligned_cols=14 Identities=36% Similarity=0.755 Sum_probs=12.3
Q ss_pred EEEEeCCCceeecc
Q 000938 906 CLVLDLDHTLLNSA 919 (1218)
Q Consensus 906 TLVLDLDETLIHSs 919 (1218)
++++|+|+||+.+.
T Consensus 1 ~iifD~DGTL~d~~ 14 (154)
T TIGR01549 1 AILFDIDGTLVDSS 14 (154)
T ss_pred CeEecCCCcccccH
Confidence 47999999999985
No 196
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=32.31 E-value=25 Score=38.49 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=13.4
Q ss_pred eEEEEeCCCceeecc
Q 000938 905 LCLVLDLDHTLLNSA 919 (1218)
Q Consensus 905 LTLVLDLDETLIHSs 919 (1218)
.++++|||||||.+.
T Consensus 5 k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 5 QAVIFDWAGTTVDFG 19 (267)
T ss_pred EEEEEcCCCCeecCC
Confidence 589999999999984
No 197
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=31.79 E-value=84 Score=38.94 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=36.2
Q ss_pred EEecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHcC
Q 000938 957 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDP 996 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLDP 996 (1218)
-.+||++.++|++|.+ .++++|.|...+.+|+.+++.+.-
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi 444 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGI 444 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 4589999999999986 599999999999999999998765
No 198
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=31.25 E-value=26 Score=36.69 Aligned_cols=17 Identities=41% Similarity=0.643 Sum_probs=14.3
Q ss_pred CCeEEEEeCCCceeecc
Q 000938 903 RKLCLVLDLDHTLLNSA 919 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs 919 (1218)
.++.+++|+||||+++.
T Consensus 13 ~~k~iiFD~DGTL~~~~ 29 (219)
T TIGR00338 13 SKKLVVFDMDSTLINAE 29 (219)
T ss_pred cCCEEEEeCcccCCCch
Confidence 35589999999999874
No 199
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=31.10 E-value=63 Score=34.96 Aligned_cols=37 Identities=11% Similarity=-0.095 Sum_probs=33.1
Q ss_pred EEecCCHHHHHH-HHh-ccceEEEEcCCcHHHHHHHHHH
Q 000938 957 TKLRPGIWTFLE-RAS-KLFEMHLYTMGNKLYATEMAKV 993 (1218)
Q Consensus 957 VKlRPGLdEFLe-eLS-k~YEIVIFTAGtreYAd~VLdi 993 (1218)
+.++|++.+.|+ .+. +.+.|+|-|++...|+.++++.
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHh
Confidence 367999999996 777 5899999999999999999976
No 200
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=31.09 E-value=24 Score=35.33 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=12.2
Q ss_pred EEEEeCCCceeecc
Q 000938 906 CLVLDLDHTLLNSA 919 (1218)
Q Consensus 906 TLVLDLDETLIHSs 919 (1218)
.+++|||+|||.+.
T Consensus 1 ~vlFDlDgtLv~~~ 14 (183)
T TIGR01509 1 AILFDLDGVLVDTS 14 (183)
T ss_pred CeeeccCCceechH
Confidence 37999999999884
No 201
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=30.97 E-value=49 Score=33.48 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=36.6
Q ss_pred ecCCHH----HHHHHH-hccceEEEEcCCcHHHHHHHHHHHcCCC-ceeeeee
Q 000938 959 LRPGIW----TFLERA-SKLFEMHLYTMGNKLYATEMAKVLDPKG-VLFAGRV 1005 (1218)
Q Consensus 959 lRPGLd----EFLeeL-Sk~YEIVIFTAGtreYAd~VLdiLDP~g-~LF~~RI 1005 (1218)
++|++. +||+++ ...++++|-|++...|+..+++.+.-.. .++..++
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 456666 999997 5789999999999999999998776443 2445444
No 202
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=30.72 E-value=24 Score=38.51 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=13.5
Q ss_pred eEEEEeCCCceeecc
Q 000938 905 LCLVLDLDHTLLNSA 919 (1218)
Q Consensus 905 LTLVLDLDETLIHSs 919 (1218)
..+++|||+||+.|.
T Consensus 23 k~viFDlDGTLiDs~ 37 (248)
T PLN02770 23 EAVLFDVDGTLCDSD 37 (248)
T ss_pred CEEEEcCCCccCcCH
Confidence 579999999999986
No 203
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=30.69 E-value=78 Score=36.03 Aligned_cols=40 Identities=20% Similarity=0.409 Sum_probs=34.0
Q ss_pred EEecCCHHHHHHHHhc--cceEEEEcCCcHHHHHHHHHHHcC
Q 000938 957 TKLRPGIWTFLERASK--LFEMHLYTMGNKLYATEMAKVLDP 996 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk--~YEIVIFTAGtreYAd~VLdiLDP 996 (1218)
+-.-||+-+.++.+++ .||++|-+.++.-+.+.+++..+-
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~ 124 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGI 124 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccH
Confidence 5567999998888875 389999999999999999987754
No 204
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=30.46 E-value=23 Score=35.79 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=12.3
Q ss_pred EEEEeCCCceeecc
Q 000938 906 CLVLDLDHTLLNSA 919 (1218)
Q Consensus 906 TLVLDLDETLIHSs 919 (1218)
.+++|+|+||+.+.
T Consensus 1 ~iiFD~DGTL~ds~ 14 (185)
T TIGR01990 1 AVIFDLDGVITDTA 14 (185)
T ss_pred CeEEcCCCccccCh
Confidence 37999999999886
No 205
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=30.28 E-value=31 Score=37.27 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 000938 905 LCLVLDLDHTLLNSA 919 (1218)
Q Consensus 905 LTLVLDLDETLIHSs 919 (1218)
.++++|||+|||.+.
T Consensus 3 k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 3 EAVIFDWAGTTVDFG 17 (253)
T ss_pred eEEEEeCCCCeecCC
Confidence 478999999999974
No 206
>PLN02382 probable sucrose-phosphatase
Probab=29.67 E-value=27 Score=41.61 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=17.9
Q ss_pred hhhcCCCeEEEEeCCCceeec
Q 000938 898 KMFSARKLCLVLDLDHTLLNS 918 (1218)
Q Consensus 898 rLLs~kKLTLVLDLDETLIHS 918 (1218)
+|-...++.||.||||||+..
T Consensus 3 ~~~~~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 3 RLSGSPRLMIVSDLDHTMVDH 23 (413)
T ss_pred cccCCCCEEEEEcCCCcCcCC
Confidence 456678999999999999955
No 207
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=29.37 E-value=27 Score=36.12 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=12.6
Q ss_pred EEEEeCCCceeecc
Q 000938 906 CLVLDLDHTLLNSA 919 (1218)
Q Consensus 906 TLVLDLDETLIHSs 919 (1218)
.+++|||+|||.+.
T Consensus 3 ~viFD~dgTLiD~~ 16 (198)
T TIGR01428 3 ALVFDVYGTLFDVH 16 (198)
T ss_pred EEEEeCCCcCccHH
Confidence 68999999999875
No 208
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=28.99 E-value=32 Score=36.91 Aligned_cols=17 Identities=41% Similarity=0.555 Sum_probs=14.7
Q ss_pred CCeEEEEeCCCceeecc
Q 000938 903 RKLCLVLDLDHTLLNSA 919 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs 919 (1218)
...++++||||||+.+.
T Consensus 3 ~~~~iiFDlDGTL~Ds~ 19 (220)
T COG0546 3 MIKAILFDLDGTLVDSA 19 (220)
T ss_pred CCCEEEEeCCCccccCh
Confidence 35689999999999986
No 209
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=28.94 E-value=34 Score=35.78 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=13.0
Q ss_pred eEEEEeCCCceeecc
Q 000938 905 LCLVLDLDHTLLNSA 919 (1218)
Q Consensus 905 LTLVLDLDETLIHSs 919 (1218)
.++++|||+||+++.
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 379999999999873
No 210
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=28.91 E-value=28 Score=36.20 Aligned_cols=93 Identities=12% Similarity=-0.024 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhccccCC---CCchhhHHHHHHHhh-hhccCceeeeeccccCCCCCCCCchHHHHHHHh-CCEEecccCC
Q 000938 1094 SLGVIERLHKIFFSHQS---LDDVDVRNILAAEQR-KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQF-GAVCTKHIDD 1168 (1218)
Q Consensus 1094 LLpfLe~IHq~FFs~~~---L~~~DVR~IL~eiRr-qILkGCvIvFSGIfP~g~~nPer~~LwkLAeqL-GAtVssdVd~ 1168 (1218)
+..+|+.++.. +.-.- -....++.+++...- ..|. .+++ ++-+ +...|+..-+.+.++.+ |..
T Consensus 102 ~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd-~i~~-~~~~--~~~KP~~~~~~~~~~~~~~~~------- 169 (224)
T TIGR02254 102 AFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFD-DIFV-SEDA--GIQKPDKEIFNYALERMPKFS------- 169 (224)
T ss_pred HHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcC-EEEE-cCcc--CCCCCCHHHHHHHHHHhcCCC-------
Confidence 45566666665 44321 123444555544332 2343 2222 2221 12245444556667777 533
Q ss_pred CccEEEeCCCCC-HHHHHHHHcCCcEEcHHHH
Q 000938 1169 QVTHVVANSLGT-DKVNWALSTGRFVVHPGWV 1199 (1218)
Q Consensus 1169 kVTHLVAss~gT-eKVk~Alk~GIkIVSPdWL 1199 (1218)
..+.|.-.... .=+..|++.|++.|...|-
T Consensus 170 -~~~~v~igD~~~~di~~A~~~G~~~i~~~~~ 200 (224)
T TIGR02254 170 -KEEVLMIGDSLTADIKGGQNAGLDTCWMNPD 200 (224)
T ss_pred -chheEEECCCcHHHHHHHHHCCCcEEEECCC
Confidence 12344443333 4577888899877766663
No 211
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=28.66 E-value=22 Score=37.04 Aligned_cols=13 Identities=46% Similarity=0.695 Sum_probs=11.7
Q ss_pred EEEeCCCceeecc
Q 000938 907 LVLDLDHTLLNSA 919 (1218)
Q Consensus 907 LVLDLDETLIHSs 919 (1218)
+|+||||||+.|.
T Consensus 1 iiFDlDGTL~Ds~ 13 (205)
T TIGR01454 1 VVFDLDGVLVDSF 13 (205)
T ss_pred CeecCcCccccCH
Confidence 5899999999885
No 212
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=28.42 E-value=31 Score=36.45 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=14.6
Q ss_pred CCeEEEEeCCCceeecc
Q 000938 903 RKLCLVLDLDHTLLNSA 919 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs 919 (1218)
.-..+++|+||||+++.
T Consensus 6 ~~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 6 QILAAIFDMDGLLIDSE 22 (222)
T ss_pred cCcEEEEcCCCCCCcCH
Confidence 45688999999999885
No 213
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=28.39 E-value=33 Score=34.60 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=14.0
Q ss_pred CeEEEEeCCCceeecc
Q 000938 904 KLCLVLDLDHTLLNSA 919 (1218)
Q Consensus 904 KLTLVLDLDETLIHSs 919 (1218)
|..+|+|+|+||+...
T Consensus 1 ~~~iiFD~dgTL~~~~ 16 (188)
T TIGR01489 1 KVVVVSDFDGTITLND 16 (188)
T ss_pred CeEEEEeCCCcccCCC
Confidence 6789999999999774
No 214
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=28.33 E-value=27 Score=39.26 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=14.5
Q ss_pred CCeEEEEeCCCceeecc
Q 000938 903 RKLCLVLDLDHTLLNSA 919 (1218)
Q Consensus 903 kKLTLVLDLDETLIHSs 919 (1218)
.-..+++||||||+.|.
T Consensus 61 ~~k~vIFDlDGTLiDS~ 77 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSL 77 (273)
T ss_pred hcCEEEECCcCccccCH
Confidence 34579999999999996
No 215
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=28.18 E-value=1.4e+02 Score=34.25 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=23.2
Q ss_pred hccceEEEEcCCcHHHHHHHHHHHcCCCce
Q 000938 971 SKLFEMHLYTMGNKLYATEMAKVLDPKGVL 1000 (1218)
Q Consensus 971 Sk~YEIVIFTAGtreYAd~VLdiLDP~g~L 1000 (1218)
-..|+|+++|.-++.=-....+-|+-++..
T Consensus 37 d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p 66 (274)
T COG3769 37 DAGVPVILCSSKTRAEMLYLQKSLGVQGLP 66 (274)
T ss_pred HcCCeEEEeccchHHHHHHHHHhcCCCCCc
Confidence 357999999988877666777888877643
No 216
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=27.95 E-value=50 Score=35.75 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=48.9
Q ss_pred EEecCCHHHHHHHHhccceEEEEcCCcHHHHHHHHHHHcCCCceeeeeeeecCCCCCCCCCCCCCCcccccccccCCC-C
Q 000938 957 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1035 (1218)
Q Consensus 957 VKlRPGLdEFLeeLSk~YEIVIFTAGtreYAd~VLdiLDP~g~LF~~RIySRDdc~~~~dG~Er~~yiKDLsrVLGRD-s 1035 (1218)
+..-||+.++|+.|.+.|.++|.|++... ++.+.- ..+|.. ++.-++.. ..+.. +..+.+=+. .+|.+ +
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl-~~~fd~-i~~~~~~~-~~KP~-p~~~~~a~~-~~~~~~~ 181 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGL-GDYFEF-VLRAGPHG-RSKPF-SDMYHLAAE-KLNVPIG 181 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCc-HHhhce-eEecccCC-cCCCc-HHHHHHHHH-HcCCChh
Confidence 45569999999999988999999998865 222222 235654 55433221 11111 112223333 35665 7
Q ss_pred cEEEEeCCC--Ccccc
Q 000938 1036 AVVIIDDSV--RVWPH 1049 (1218)
Q Consensus 1036 rVVIVDDsp--dVW~~ 1049 (1218)
.+|+|.|++ ++-..
T Consensus 182 ~~~~VGD~~~~Di~~A 197 (238)
T PRK10748 182 EILHVGDDLTTDVAGA 197 (238)
T ss_pred HEEEEcCCcHHHHHHH
Confidence 899998874 55443
No 217
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=27.94 E-value=28 Score=37.62 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=13.3
Q ss_pred eEEEEeCCCceeecc
Q 000938 905 LCLVLDLDHTLLNSA 919 (1218)
Q Consensus 905 LTLVLDLDETLIHSs 919 (1218)
..+++|||+||+.+.
T Consensus 11 k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 11 SALTFDLDDTLYDNR 25 (238)
T ss_pred eeEEEcCcccccCCh
Confidence 479999999999884
No 218
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=27.59 E-value=31 Score=36.04 Aligned_cols=16 Identities=44% Similarity=0.567 Sum_probs=13.6
Q ss_pred CeEEEEeCCCceeecc
Q 000938 904 KLCLVLDLDHTLLNSA 919 (1218)
Q Consensus 904 KLTLVLDLDETLIHSs 919 (1218)
-..+++|+|+||+++.
T Consensus 6 ~~~iiFD~DGTL~d~~ 21 (226)
T PRK13222 6 IRAVAFDLDGTLVDSA 21 (226)
T ss_pred CcEEEEcCCcccccCH
Confidence 3479999999999875
No 219
>PRK09449 dUMP phosphatase; Provisional
Probab=27.15 E-value=29 Score=36.48 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=25.0
Q ss_pred CCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHHcCCcEEcHH
Q 000938 1145 NPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPG 1197 (1218)
Q Consensus 1145 nPer~~LwkLAeqLGAtVssdVd~kVTHLVAss~gTeKVk~Alk~GIkIVSPd 1197 (1218)
.|+...+...++.+|.. +.-..++..+.-..=+..|++.|++.|...
T Consensus 150 KP~p~~~~~~~~~~~~~------~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 150 KPDVAIFDYALEQMGNP------DRSRVLMVGDNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred CCCHHHHHHHHHHcCCC------CcccEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence 45555566667777731 111233333322234677888888766544
No 220
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=27.11 E-value=35 Score=34.89 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=12.9
Q ss_pred eEEEEeCCCceeecc
Q 000938 905 LCLVLDLDHTLLNSA 919 (1218)
Q Consensus 905 LTLVLDLDETLIHSs 919 (1218)
.++|+|||+||+.+.
T Consensus 5 k~viFD~DGTLid~~ 19 (201)
T TIGR01491 5 KLIIFDLDGTLTDVM 19 (201)
T ss_pred eEEEEeCCCCCcCCc
Confidence 479999999999864
No 221
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=26.26 E-value=79 Score=40.22 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=43.2
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhcccccCCCcceeeeeccceEEEEecCCHHHHHHHHhc--cceEEE
Q 000938 901 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK--LFEMHL 978 (1218)
Q Consensus 901 s~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~Ee~D~~~P~~~lF~~~~~~~YVKlRPGLdEFLeeLSk--~YEIVI 978 (1218)
..++..|++|+|+||+-... +|. .....|.+.+.|++|.+ ...|+|
T Consensus 489 ~~~~rLi~~D~DGTL~~~~~----~~~----------------------------~~~~~~~~~~~L~~L~~d~g~~V~i 536 (726)
T PRK14501 489 AASRRLLLLDYDGTLVPFAP----DPE----------------------------LAVPDKELRDLLRRLAADPNTDVAI 536 (726)
T ss_pred hccceEEEEecCccccCCCC----Ccc----------------------------cCCCCHHHHHHHHHHHcCCCCeEEE
Confidence 35678999999999995421 110 01235678889999987 688999
Q ss_pred EcCCcHHHHHHHHHH
Q 000938 979 YTMGNKLYATEMAKV 993 (1218)
Q Consensus 979 FTAGtreYAd~VLdi 993 (1218)
.|.-.......++..
T Consensus 537 vSGR~~~~l~~~~~~ 551 (726)
T PRK14501 537 ISGRDRDTLERWFGD 551 (726)
T ss_pred EeCCCHHHHHHHhCC
Confidence 998887776665543
No 222
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=25.69 E-value=1.6e+02 Score=35.85 Aligned_cols=129 Identities=19% Similarity=0.192 Sum_probs=66.3
Q ss_pred CCCCCCCCcccccchhccCCchHHHHHHhHHHHHhhHHh-hhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhc
Q 000938 858 PVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQ-KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKE 936 (1218)
Q Consensus 858 ~~~~~pq~~~~~f~~l~~G~~~~q~a~I~ke~akrL~~q-~rLLs~kKLTLVLDLDETLIHSs~~~evdP~~dEil~~~E 936 (1218)
.+....|..+.+|.+...--...+ ..+.+.+. ..-+...+..+|||||.|..-....++.--.+. + ++
T Consensus 99 ~~~Las~~t~sR~e~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~LDiD~T~~~~~G~Qe~~~~n~--y-~g- 167 (448)
T PF13701_consen 99 SDRLASQPTLSRLENRPDERDLKR-------LRRALVDLFLASYKKPPKEIVLDIDSTVDDVHGEQEGAVFNT--Y-YG- 167 (448)
T ss_pred cccccchhhHHHHHccccHHHHHH-------HHHHHHHHHHHHhccccceEEEecccccccchhhcccccccc--c-CC-
Confidence 333566778888887766322111 11222221 111245678999999999853332111000000 0 00
Q ss_pred ccccCCCcceeeee---ccceEEEEecCC-------HHHHHHHHhccc-----eE-EEEcCCcHHHHHHHHHHHcCCCce
Q 000938 937 EQDREKPHRHLFRF---PHMGMWTKLRPG-------IWTFLERASKLF-----EM-HLYTMGNKLYATEMAKVLDPKGVL 1000 (1218)
Q Consensus 937 e~D~~~P~~~lF~~---~~~~~YVKlRPG-------LdEFLeeLSk~Y-----EI-VIFTAGtreYAd~VLdiLDP~g~L 1000 (1218)
. ..+.-++.+ .+.-+-..+||| ..+||+++-..+ +. +++=+-+--|...|++.++-.|..
T Consensus 168 -~---~gY~PL~~f~g~~G~~l~a~LRpGn~~sa~g~~~fL~~~l~~lr~~~~~~~ILvR~DSgF~~~el~~~ce~~g~~ 243 (448)
T PF13701_consen 168 -E---DGYHPLVAFDGQTGYLLAAELRPGNVHSAKGAAEFLKRVLRRLRQRWPDTRILVRGDSGFASPELMDWCEAEGVD 243 (448)
T ss_pred -C---cccccceeccCCCCceEEEEccCCCCChHHHHHHHHHHHHHHHhhhCccceEEEEecCccCcHHHHHHHHhCCCe
Confidence 0 111112222 123345789998 667777754332 32 456566666777799999887754
Q ss_pred e
Q 000938 1001 F 1001 (1218)
Q Consensus 1001 F 1001 (1218)
|
T Consensus 244 y 244 (448)
T PF13701_consen 244 Y 244 (448)
T ss_pred E
Confidence 3
No 223
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=25.63 E-value=32 Score=34.69 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=11.7
Q ss_pred EEEeCCCceeecc
Q 000938 907 LVLDLDHTLLNSA 919 (1218)
Q Consensus 907 LVLDLDETLIHSs 919 (1218)
|++|||||||.+.
T Consensus 2 viFD~DGTL~D~~ 14 (175)
T TIGR01493 2 MVFDVYGTLVDVH 14 (175)
T ss_pred eEEecCCcCcccH
Confidence 7999999999875
No 224
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=25.29 E-value=37 Score=44.17 Aligned_cols=68 Identities=24% Similarity=0.344 Sum_probs=38.3
Q ss_pred hccchhHhhhhhHHHHHHHHHHhhccCCCcchhHHHHHHHhhhhheeeeeeccChhhhhhhHHHHHHHHHhhhccCCCCC
Q 000938 188 RGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLF 267 (1218)
Q Consensus 188 ~~~~sf~~~c~~~~~~~~~l~~~~~~~~~~~~d~l~~~~~~~~~~~~~v~~s~~~~~~~~nk~~~~~~~~~~~~~~~~~~ 267 (1218)
..+.-|.=.|-.-+ +.|.+++.+......-.+| .-|++. +.....+.||..|.+|+.+|-.|+-.+.
T Consensus 415 ~~elPftf~~P~s~---eel~~lL~~~~~~~~~~iI----~RIrk~------~hpsLa~~NK~Kl~~f~~vLlq~i~~la 481 (840)
T PF04147_consen 415 KSELPFTFPCPSSH---EELLELLDGYSPEDQPTII----QRIRKC------YHPSLAEGNKEKLQVFFGVLLQHILYLA 481 (840)
T ss_pred ccCCCceecCCCCH---HHHHHHHhcCCHHHHhHHH----HHHHHh------CCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 56667777788754 4555677766533333333 344443 4445566777777666655554444433
Q ss_pred C
Q 000938 268 S 268 (1218)
Q Consensus 268 ~ 268 (1218)
+
T Consensus 482 ~ 482 (840)
T PF04147_consen 482 S 482 (840)
T ss_pred c
Confidence 3
No 225
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=24.85 E-value=39 Score=36.51 Aligned_cols=16 Identities=44% Similarity=0.526 Sum_probs=13.5
Q ss_pred CeEEEEeCCCceeecc
Q 000938 904 KLCLVLDLDHTLLNSA 919 (1218)
Q Consensus 904 KLTLVLDLDETLIHSs 919 (1218)
-+.+++||||||+.+.
T Consensus 10 ~k~vIFDlDGTL~d~~ 25 (224)
T PRK14988 10 VDTVLLDMDGTLLDLA 25 (224)
T ss_pred CCEEEEcCCCCccchh
Confidence 4579999999999863
No 226
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=24.02 E-value=46 Score=37.51 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.0
Q ss_pred CCCeEEEEeCCCceeecc
Q 000938 902 ARKLCLVLDLDHTLLNSA 919 (1218)
Q Consensus 902 ~kKLTLVLDLDETLIHSs 919 (1218)
.+-..+|+||||||+.+.
T Consensus 38 ~~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 38 ALPEALLFDCDGVLVETE 55 (286)
T ss_pred cCCcEEEEeCceeEEccc
Confidence 344589999999999986
No 227
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=21.78 E-value=1.5e+02 Score=31.79 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=29.8
Q ss_pred EecCCHHHHHHHHhc-cceEEEEcCCcHHHHHHHHHHHc
Q 000938 958 KLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLD 995 (1218)
Q Consensus 958 KlRPGLdEFLeeLSk-~YEIVIFTAGtreYAd~VLdiLD 995 (1218)
+.|||+.+|+..+.+ -|.++-.|+-.-..|...-.+|-
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~ 65 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLA 65 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHH
Confidence 689999999999885 58888888877667776666554
No 228
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=21.65 E-value=49 Score=34.28 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=11.1
Q ss_pred eEEEEeCCCceee
Q 000938 905 LCLVLDLDHTLLN 917 (1218)
Q Consensus 905 LTLVLDLDETLIH 917 (1218)
..+|+|||+||+.
T Consensus 2 ~~v~FD~DGTL~~ 14 (205)
T PRK13582 2 EIVCLDLEGVLVP 14 (205)
T ss_pred eEEEEeCCCCChh
Confidence 3689999999993
No 229
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=21.19 E-value=48 Score=34.87 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.6
Q ss_pred CeEEEEeCCCceeecc
Q 000938 904 KLCLVLDLDHTLLNSA 919 (1218)
Q Consensus 904 KLTLVLDLDETLIHSs 919 (1218)
-..+++||||||+-+.
T Consensus 4 ~~~viFD~DGTL~d~~ 19 (221)
T PRK10563 4 IEAVFFDCDGTLVDSE 19 (221)
T ss_pred CCEEEECCCCCCCCCh
Confidence 4578999999999874
Done!