Query 000940
Match_columns 1216
No_of_seqs 500 out of 1587
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 11:14:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0998 Synaptic vesicle prote 100.0 6.9E-47 1.5E-51 463.4 41.0 585 5-797 6-600 (847)
2 KOG1029 Endocytic adaptor prot 100.0 6.9E-42 1.5E-46 397.5 42.1 293 427-750 184-526 (1118)
3 KOG1029 Endocytic adaptor prot 99.9 3.2E-19 6.9E-24 209.9 32.1 93 426-520 4-96 (1118)
4 PF12763 EF-hand_4: Cytoskelet 99.8 1.3E-20 2.9E-25 181.0 7.6 97 1-99 1-99 (104)
5 PF12763 EF-hand_4: Cytoskelet 99.8 6.3E-20 1.4E-24 176.3 7.0 92 431-523 2-95 (104)
6 smart00027 EH Eps15 homology d 99.6 2.3E-15 4.9E-20 141.0 11.2 93 429-522 1-93 (96)
7 KOG1955 Ral-GTPase effector RA 99.5 1.2E-14 2.6E-19 166.2 8.0 100 422-522 215-314 (737)
8 KOG0998 Synaptic vesicle prote 99.5 9.4E-13 2E-17 163.9 24.1 100 423-524 114-215 (847)
9 KOG1955 Ral-GTPase effector RA 99.4 4.7E-14 1E-18 161.4 5.2 88 5-93 226-313 (737)
10 smart00027 EH Eps15 homology d 99.3 1E-11 2.2E-16 116.5 9.8 90 5-95 5-94 (96)
11 KOG1954 Endocytosis/signaling 99.3 4.7E-12 1E-16 142.8 5.8 90 7-98 441-530 (532)
12 KOG1954 Endocytosis/signaling 99.1 1.8E-10 3.8E-15 130.3 7.0 95 425-522 432-526 (532)
13 cd00052 EH Eps15 homology doma 99.0 1.8E-09 3.9E-14 92.9 8.0 67 441-507 1-67 (67)
14 cd00052 EH Eps15 homology doma 98.9 2.5E-09 5.5E-14 92.0 8.2 67 12-78 1-67 (67)
15 PF13499 EF-hand_7: EF-hand do 98.8 1.5E-08 3.3E-13 87.9 6.6 60 440-499 1-66 (66)
16 cd05022 S-100A13 S-100A13: S-1 98.7 3.4E-08 7.4E-13 93.2 8.5 72 437-508 6-82 (89)
17 KOG0027 Calmodulin and related 98.6 6.4E-08 1.4E-12 97.7 7.5 65 436-500 82-148 (151)
18 COG5126 FRQ1 Ca2+-binding prot 98.6 9.7E-08 2.1E-12 99.0 7.7 63 437-499 90-154 (160)
19 KOG0027 Calmodulin and related 98.6 2E-07 4.3E-12 94.2 9.2 71 433-503 2-74 (151)
20 PF13499 EF-hand_7: EF-hand do 98.5 1.7E-07 3.7E-12 81.4 6.6 60 11-70 1-66 (66)
21 cd05027 S-100B S-100B: S-100B 98.5 4E-07 8.7E-12 85.6 9.5 69 437-505 6-83 (88)
22 cd05025 S-100A1 S-100A1: S-100 98.5 4.2E-07 9.1E-12 84.9 9.1 71 438-508 8-87 (92)
23 cd05026 S-100Z S-100Z: S-100Z 98.5 5.9E-07 1.3E-11 84.8 9.5 69 437-505 8-85 (93)
24 cd05029 S-100A6 S-100A6: S-100 98.5 6.3E-07 1.4E-11 84.3 9.3 69 437-505 8-83 (88)
25 cd05031 S-100A10_like S-100A10 98.5 6.9E-07 1.5E-11 83.9 9.4 69 437-505 6-83 (94)
26 cd00213 S-100 S-100: S-100 dom 98.5 6.8E-07 1.5E-11 82.4 9.0 69 435-503 4-81 (88)
27 PTZ00183 centrin; Provisional 98.4 1.7E-06 3.6E-11 85.5 9.7 71 431-501 9-81 (158)
28 cd05023 S-100A11 S-100A11: S-1 98.3 2.1E-06 4.6E-11 81.0 9.2 70 436-505 6-84 (89)
29 PTZ00184 calmodulin; Provision 98.3 2.7E-06 5.8E-11 82.7 9.5 71 432-502 4-76 (149)
30 PRK11637 AmiB activator; Provi 98.3 6.3E-05 1.4E-09 88.4 20.8 14 936-949 365-378 (428)
31 COG5126 FRQ1 Ca2+-binding prot 98.2 3.9E-06 8.4E-11 87.3 8.7 71 432-503 13-85 (160)
32 PRK09039 hypothetical protein; 98.2 4.7E-05 1E-09 87.6 18.0 66 663-730 117-182 (343)
33 cd05022 S-100A13 S-100A13: S-1 98.2 4.8E-06 1E-10 78.8 8.2 71 9-79 7-82 (89)
34 cd00051 EFh EF-hand, calcium b 98.2 5.9E-06 1.3E-10 67.4 7.2 58 441-498 2-61 (63)
35 cd00252 SPARC_EC SPARC_EC; ext 98.2 6.8E-06 1.5E-10 81.4 8.4 64 434-499 43-106 (116)
36 PF00038 Filament: Intermediat 98.1 0.00012 2.6E-09 82.0 19.2 117 590-709 171-288 (312)
37 cd05025 S-100A1 S-100A1: S-100 98.1 1.1E-05 2.5E-10 75.4 8.8 70 10-79 9-87 (92)
38 cd05027 S-100B S-100B: S-100B 98.1 1.5E-05 3.3E-10 75.1 9.0 71 9-79 7-86 (88)
39 PF13833 EF-hand_8: EF-hand do 98.1 6.6E-06 1.4E-10 69.3 5.7 49 452-500 1-52 (54)
40 COG1579 Zn-ribbon protein, pos 98.1 0.00022 4.9E-09 78.5 18.6 158 590-747 22-192 (239)
41 PTZ00184 calmodulin; Provision 98.1 1.5E-05 3.2E-10 77.6 8.6 72 1-72 1-75 (149)
42 cd05029 S-100A6 S-100A6: S-100 98.1 1.6E-05 3.4E-10 75.0 8.4 77 1-77 1-84 (88)
43 KOG0041 Predicted Ca2+-binding 98.0 9.1E-06 2E-10 86.7 7.1 77 427-509 89-168 (244)
44 cd05031 S-100A10_like S-100A10 98.0 2.4E-05 5.2E-10 73.6 8.9 70 9-78 7-85 (94)
45 PTZ00183 centrin; Provisional 98.0 1.8E-05 3.9E-10 78.2 8.4 61 439-499 90-152 (158)
46 PRK09039 hypothetical protein; 98.0 0.00033 7.2E-09 80.8 19.7 98 611-708 79-183 (343)
47 TIGR02169 SMC_prok_A chromosom 98.0 0.00033 7.1E-09 90.0 21.5 6 432-437 149-154 (1164)
48 KOG0028 Ca2+-binding protein ( 98.0 1.6E-05 3.4E-10 82.5 7.7 64 437-500 104-169 (172)
49 TIGR02169 SMC_prok_A chromosom 98.0 0.00041 8.9E-09 89.1 22.1 17 725-741 467-483 (1164)
50 PF08317 Spc7: Spc7 kinetochor 98.0 0.00053 1.2E-08 78.4 20.5 86 659-750 213-299 (325)
51 COG1340 Uncharacterized archae 98.0 0.00052 1.1E-08 77.4 19.8 122 609-730 154-275 (294)
52 cd05030 calgranulins Calgranul 98.0 3.2E-05 7E-10 72.5 8.5 69 437-505 6-83 (88)
53 TIGR02168 SMC_prok_B chromosom 98.0 0.00042 9.2E-09 88.6 21.3 59 648-706 838-896 (1179)
54 cd05026 S-100Z S-100Z: S-100Z 97.9 4.1E-05 9E-10 72.5 9.1 70 9-78 9-87 (93)
55 KOG0250 DNA repair protein RAD 97.9 0.00033 7.2E-09 88.8 19.1 32 435-466 161-192 (1074)
56 cd00213 S-100 S-100: S-100 dom 97.9 4.1E-05 8.9E-10 70.7 8.6 69 7-75 5-82 (88)
57 PF09726 Macoilin: Transmembra 97.9 0.00036 7.8E-09 86.9 19.3 144 600-745 461-633 (697)
58 KOG0034 Ca2+/calmodulin-depend 97.9 3.6E-05 7.9E-10 82.0 8.4 64 438-501 103-175 (187)
59 PF00038 Filament: Intermediat 97.9 0.00057 1.2E-08 76.6 17.9 96 613-708 169-273 (312)
60 PF14658 EF-hand_9: EF-hand do 97.9 3.3E-05 7.1E-10 69.9 6.4 59 443-501 2-64 (66)
61 cd05023 S-100A11 S-100A11: S-1 97.9 7.4E-05 1.6E-09 70.7 9.0 70 9-78 8-86 (89)
62 smart00787 Spc7 Spc7 kinetocho 97.8 0.0015 3.2E-08 74.8 21.0 82 660-751 209-295 (312)
63 PF12718 Tropomyosin_1: Tropom 97.8 0.00092 2E-08 68.7 17.3 130 605-738 6-140 (143)
64 KOG0028 Ca2+-binding protein ( 97.8 4.3E-05 9.3E-10 79.4 7.6 72 432-506 26-99 (172)
65 PF12718 Tropomyosin_1: Tropom 97.8 0.0012 2.7E-08 67.7 17.8 120 611-732 19-141 (143)
66 KOG0250 DNA repair protein RAD 97.8 0.0011 2.4E-08 84.2 20.6 16 428-445 179-194 (1074)
67 PF09726 Macoilin: Transmembra 97.7 0.00049 1.1E-08 85.7 16.4 58 631-688 457-514 (697)
68 cd00252 SPARC_EC SPARC_EC; ext 97.7 8.9E-05 1.9E-09 73.6 7.8 62 7-70 45-106 (116)
69 PF08317 Spc7: Spc7 kinetochor 97.7 0.0039 8.4E-08 71.4 21.9 116 613-737 149-268 (325)
70 PRK02224 chromosome segregatio 97.7 0.0019 4.1E-08 82.0 21.2 43 668-710 598-640 (880)
71 TIGR01843 type_I_hlyD type I s 97.7 0.0017 3.7E-08 74.6 18.4 72 669-741 196-267 (423)
72 PRK04863 mukB cell division pr 97.7 0.0021 4.6E-08 85.8 21.4 129 642-771 356-506 (1486)
73 PHA02562 46 endonuclease subun 97.7 0.0029 6.4E-08 76.0 21.0 68 667-736 328-395 (562)
74 cd00051 EFh EF-hand, calcium b 97.6 0.00018 3.9E-09 58.6 7.2 59 12-70 2-62 (63)
75 KOG0971 Microtubule-associated 97.6 0.0016 3.4E-08 81.1 17.7 125 607-733 333-475 (1243)
76 COG1579 Zn-ribbon protein, pos 97.6 0.0026 5.7E-08 70.3 17.7 99 610-708 28-128 (239)
77 PHA02562 46 endonuclease subun 97.6 0.0037 8E-08 75.2 20.6 67 643-709 215-281 (562)
78 PRK03918 chromosome segregatio 97.6 0.0031 6.7E-08 79.9 20.6 16 768-783 747-762 (880)
79 PF13833 EF-hand_8: EF-hand do 97.6 0.00013 2.8E-09 61.5 5.7 49 23-71 1-52 (54)
80 PF07888 CALCOCO1: Calcium bin 97.6 0.0054 1.2E-07 74.4 20.7 16 715-730 285-300 (546)
81 KOG0977 Nuclear envelope prote 97.5 0.0038 8.3E-08 75.6 18.9 92 597-688 90-188 (546)
82 PF10168 Nup88: Nuclear pore c 97.5 0.0059 1.3E-07 76.7 21.1 152 591-745 546-717 (717)
83 KOG0037 Ca2+-binding protein, 97.5 0.0003 6.4E-09 76.3 8.5 65 438-502 123-189 (221)
84 PF04849 HAP1_N: HAP1 N-termin 97.5 0.0035 7.6E-08 71.4 17.0 126 612-742 166-298 (306)
85 COG1196 Smc Chromosome segrega 97.5 0.0052 1.1E-07 80.9 21.2 14 719-732 890-903 (1163)
86 PRK04863 mukB cell division pr 97.5 0.0046 1E-07 82.7 20.8 73 659-733 352-424 (1486)
87 KOG0031 Myosin regulatory ligh 97.5 0.00038 8.3E-09 72.2 8.5 74 430-510 23-98 (171)
88 PF00261 Tropomyosin: Tropomyo 97.5 0.0053 1.1E-07 67.4 17.6 50 692-743 171-220 (237)
89 COG1196 Smc Chromosome segrega 97.5 0.0061 1.3E-07 80.2 21.2 9 512-520 569-577 (1163)
90 PF15070 GOLGA2L5: Putative go 97.4 0.01 2.2E-07 73.5 21.7 22 691-712 161-182 (617)
91 PF10473 CENP-F_leu_zip: Leuci 97.4 0.0071 1.5E-07 62.3 17.1 98 611-708 22-119 (140)
92 PRK02224 chromosome segregatio 97.4 0.0071 1.5E-07 76.9 20.8 12 676-687 627-638 (880)
93 TIGR01843 type_I_hlyD type I s 97.4 0.01 2.2E-07 68.4 20.1 76 660-737 194-270 (423)
94 KOG0031 Myosin regulatory ligh 97.4 0.0004 8.6E-09 72.1 7.8 61 438-498 100-162 (171)
95 PF10186 Atg14: UV radiation r 97.4 0.0063 1.4E-07 67.1 17.7 24 615-638 22-45 (302)
96 PF06008 Laminin_I: Laminin Do 97.4 0.0083 1.8E-07 66.7 18.7 135 607-741 60-206 (264)
97 COG4942 Membrane-bound metallo 97.4 0.0078 1.7E-07 71.1 19.1 71 600-670 39-109 (420)
98 PF12128 DUF3584: Protein of u 97.4 0.013 2.8E-07 77.5 23.0 47 698-747 751-798 (1201)
99 PF04111 APG6: Autophagy prote 97.4 0.00096 2.1E-08 76.3 10.9 82 614-696 10-91 (314)
100 PF07888 CALCOCO1: Calcium bin 97.4 0.0047 1E-07 74.9 17.0 29 606-634 150-178 (546)
101 TIGR03017 EpsF chain length de 97.4 0.01 2.2E-07 69.7 19.5 56 580-635 140-200 (444)
102 KOG0377 Protein serine/threoni 97.4 0.00037 7.9E-09 81.3 7.3 68 439-506 547-620 (631)
103 KOG0030 Myosin essential light 97.4 0.00039 8.4E-09 71.1 6.7 74 433-506 5-82 (152)
104 COG3883 Uncharacterized protei 97.3 0.0084 1.8E-07 67.2 17.5 20 691-710 149-168 (265)
105 PLN02964 phosphatidylserine de 97.3 0.00044 9.5E-09 85.3 8.3 71 426-500 130-206 (644)
106 KOG0161 Myosin class II heavy 97.3 0.0086 1.9E-07 81.1 20.1 25 473-497 770-794 (1930)
107 KOG0980 Actin-binding protein 97.3 0.011 2.4E-07 74.0 19.4 26 623-648 382-407 (980)
108 TIGR03007 pepcterm_ChnLen poly 97.3 0.013 2.8E-07 70.0 19.5 54 581-634 131-189 (498)
109 PF13851 GAS: Growth-arrest sp 97.3 0.04 8.7E-07 59.7 21.4 68 591-665 12-79 (201)
110 TIGR01005 eps_transp_fam exopo 97.3 0.0036 7.9E-08 78.5 15.6 100 578-677 161-266 (754)
111 KOG0041 Predicted Ca2+-binding 97.3 0.0006 1.3E-08 73.3 7.3 69 7-75 96-166 (244)
112 TIGR00606 rad50 rad50. This fa 97.3 0.0096 2.1E-07 79.3 19.9 13 932-945 1149-1162(1311)
113 KOG0980 Actin-binding protein 97.3 0.0098 2.1E-07 74.5 18.4 72 619-690 395-466 (980)
114 PF04156 IncA: IncA protein; 97.2 0.012 2.5E-07 62.0 16.4 61 611-671 86-146 (191)
115 KOG0996 Structural maintenance 97.2 0.0077 1.7E-07 77.2 17.4 118 624-741 437-570 (1293)
116 KOG0161 Myosin class II heavy 97.2 0.013 2.7E-07 79.6 20.3 18 36-53 329-346 (1930)
117 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.2 0.0085 1.8E-07 60.5 14.5 11 665-675 41-51 (132)
118 KOG0030 Myosin essential light 97.2 0.00065 1.4E-08 69.5 6.5 59 438-497 87-147 (152)
119 TIGR00606 rad50 rad50. This fa 97.2 0.011 2.4E-07 78.8 19.5 14 668-681 849-862 (1311)
120 KOG0996 Structural maintenance 97.2 0.017 3.6E-07 74.3 19.5 123 623-745 380-504 (1293)
121 PF04111 APG6: Autophagy prote 97.2 0.015 3.3E-07 66.6 17.8 143 616-767 46-211 (314)
122 KOG0804 Cytoplasmic Zn-finger 97.2 0.0084 1.8E-07 70.7 15.5 37 635-671 383-419 (493)
123 COG4372 Uncharacterized protei 97.2 0.042 9.2E-07 64.0 20.7 57 611-667 135-191 (499)
124 PRK11281 hypothetical protein; 97.2 0.0055 1.2E-07 80.0 15.5 26 716-741 230-255 (1113)
125 cd05030 calgranulins Calgranul 97.1 0.0019 4.2E-08 60.7 8.4 68 10-77 8-84 (88)
126 PF15619 Lebercilin: Ciliary p 97.1 0.04 8.7E-07 59.5 19.4 139 602-745 8-150 (194)
127 KOG0995 Centromere-associated 97.1 0.021 4.5E-07 69.2 18.7 67 612-678 258-324 (581)
128 PF12128 DUF3584: Protein of u 97.1 0.024 5.1E-07 75.2 21.2 31 717-747 740-770 (1201)
129 smart00787 Spc7 Spc7 kinetocho 97.1 0.054 1.2E-06 62.4 21.4 58 677-736 205-262 (312)
130 COG4372 Uncharacterized protei 97.1 0.054 1.2E-06 63.1 21.0 20 648-667 151-170 (499)
131 PRK09841 cryptic autophosphory 97.1 0.015 3.2E-07 73.3 18.3 161 579-745 235-402 (726)
132 PF04156 IncA: IncA protein; 97.1 0.021 4.6E-07 60.1 16.8 26 614-639 82-107 (191)
133 cd05024 S-100A10 S-100A10: A s 97.1 0.0034 7.5E-08 60.3 9.8 67 438-505 7-80 (91)
134 PF12761 End3: Actin cytoskele 97.1 0.0044 9.6E-08 66.7 11.6 93 598-696 98-194 (195)
135 TIGR03007 pepcterm_ChnLen poly 97.1 0.011 2.4E-07 70.5 16.4 58 683-740 317-382 (498)
136 PRK04778 septation ring format 97.1 0.014 3E-07 71.6 17.5 61 611-671 280-340 (569)
137 KOG0034 Ca2+/calmodulin-depend 97.1 0.0016 3.4E-08 69.8 8.2 64 10-73 104-176 (187)
138 KOG0977 Nuclear envelope prote 97.1 0.0036 7.7E-08 75.9 12.1 64 611-674 247-315 (546)
139 TIGR02680 conserved hypothetic 97.1 0.022 4.9E-07 76.2 20.5 107 636-744 278-392 (1353)
140 PF05667 DUF812: Protein of un 97.1 0.033 7.2E-07 68.9 20.3 128 606-733 328-460 (594)
141 PF00261 Tropomyosin: Tropomyo 97.0 0.046 1E-06 60.2 19.3 50 635-684 79-128 (237)
142 COG1340 Uncharacterized archae 97.0 0.024 5.2E-07 64.5 17.2 70 606-675 20-89 (294)
143 PRK11519 tyrosine kinase; Prov 97.0 0.024 5.1E-07 71.4 19.1 161 579-745 235-402 (719)
144 PF04012 PspA_IM30: PspA/IM30 97.0 0.084 1.8E-06 57.1 20.8 142 589-733 27-178 (221)
145 PF12325 TMF_TATA_bd: TATA ele 97.0 0.021 4.4E-07 57.6 14.9 94 611-705 21-118 (120)
146 KOG0044 Ca2+ sensor (EF-Hand s 97.0 0.001 2.2E-08 71.5 5.9 61 440-500 101-174 (193)
147 PLN02964 phosphatidylserine de 97.0 0.0023 4.9E-08 79.3 9.6 68 433-500 173-242 (644)
148 KOG0994 Extracellular matrix g 97.0 0.043 9.3E-07 70.3 20.2 23 719-741 1723-1745(1758)
149 PF12795 MscS_porin: Mechanose 97.0 0.029 6.2E-07 61.7 17.0 55 688-742 155-214 (240)
150 KOG4674 Uncharacterized conser 97.0 0.021 4.6E-07 76.6 18.3 25 718-742 1358-1382(1822)
151 KOG0933 Structural maintenance 97.0 0.054 1.2E-06 69.0 20.7 80 629-708 796-875 (1174)
152 PF11932 DUF3450: Protein of u 96.9 0.044 9.6E-07 60.6 18.2 24 764-790 201-227 (251)
153 PF05701 WEMBL: Weak chloropla 96.9 0.061 1.3E-06 65.7 20.9 86 647-732 294-384 (522)
154 KOG0963 Transcription factor/C 96.9 0.023 5.1E-07 69.3 17.1 118 650-771 237-371 (629)
155 PF14662 CCDC155: Coiled-coil 96.9 0.06 1.3E-06 58.0 18.1 95 615-713 31-125 (193)
156 KOG2991 Splicing regulator [RN 96.9 0.1 2.2E-06 58.3 20.2 124 619-742 142-307 (330)
157 COG3883 Uncharacterized protei 96.9 0.12 2.6E-06 58.3 21.2 32 679-710 172-203 (265)
158 TIGR01000 bacteriocin_acc bact 96.9 0.069 1.5E-06 63.8 20.8 27 717-743 288-314 (457)
159 PF15070 GOLGA2L5: Putative go 96.9 0.045 9.8E-07 68.0 19.6 13 758-770 245-257 (617)
160 KOG0999 Microtubule-associated 96.9 0.044 9.6E-07 66.0 18.5 25 610-634 47-71 (772)
161 PF14658 EF-hand_9: EF-hand do 96.9 0.002 4.3E-08 58.6 5.9 59 14-72 2-64 (66)
162 PF13851 GAS: Growth-arrest sp 96.9 0.034 7.4E-07 60.2 16.3 31 716-746 146-176 (201)
163 KOG0044 Ca2+ sensor (EF-Hand s 96.9 0.0024 5.2E-08 68.7 7.3 70 439-508 64-135 (193)
164 KOG1853 LIS1-interacting prote 96.9 0.075 1.6E-06 59.1 18.6 74 655-728 66-148 (333)
165 PRK12309 transaldolase/EF-hand 96.9 0.0023 5E-08 75.2 7.7 56 438-504 333-388 (391)
166 KOG4360 Uncharacterized coiled 96.8 0.017 3.8E-07 68.9 14.6 97 611-708 164-265 (596)
167 KOG0964 Structural maintenance 96.8 0.051 1.1E-06 69.0 19.2 85 606-690 265-370 (1200)
168 PF15397 DUF4618: Domain of un 96.8 0.11 2.5E-06 58.3 20.2 69 601-672 68-137 (258)
169 KOG0933 Structural maintenance 96.8 0.069 1.5E-06 68.1 20.3 46 665-710 811-856 (1174)
170 PLN02939 transferase, transfer 96.8 0.021 4.5E-07 73.5 16.0 87 588-674 145-252 (977)
171 PF10174 Cast: RIM-binding pro 96.8 0.068 1.5E-06 67.9 20.3 121 613-742 287-414 (775)
172 PRK10929 putative mechanosensi 96.8 0.031 6.8E-07 73.1 17.8 56 688-743 178-238 (1109)
173 TIGR01005 eps_transp_fam exopo 96.8 0.035 7.5E-07 69.9 17.9 29 716-744 379-407 (754)
174 PF10186 Atg14: UV radiation r 96.8 0.11 2.4E-06 57.5 19.8 100 637-745 59-159 (302)
175 PF09730 BicD: Microtubule-ass 96.8 0.068 1.5E-06 67.2 19.9 126 611-746 32-176 (717)
176 PF07111 HCR: Alpha helical co 96.8 0.032 6.9E-07 69.0 16.5 123 617-743 475-605 (739)
177 PRK12704 phosphodiesterase; Pr 96.8 0.069 1.5E-06 65.2 19.5 25 734-758 192-219 (520)
178 TIGR01010 BexC_CtrB_KpsE polys 96.8 0.018 4E-07 66.3 14.0 25 611-635 175-199 (362)
179 PF00036 EF-hand_1: EF hand; 96.7 0.0013 2.8E-08 50.6 3.1 27 474-500 1-27 (29)
180 KOG0046 Ca2+-binding actin-bun 96.7 0.0036 7.8E-08 74.8 8.1 73 428-501 6-85 (627)
181 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.7 0.13 2.8E-06 52.1 18.1 22 613-634 17-38 (132)
182 TIGR02977 phageshock_pspA phag 96.7 0.18 4E-06 55.0 20.5 80 654-733 91-179 (219)
183 PF15619 Lebercilin: Ciliary p 96.7 0.085 1.8E-06 57.1 17.7 92 616-707 57-149 (194)
184 PF11559 ADIP: Afadin- and alp 96.7 0.07 1.5E-06 54.7 16.4 96 630-737 55-150 (151)
185 KOG4643 Uncharacterized coiled 96.7 0.036 7.7E-07 70.5 16.7 52 597-648 182-233 (1195)
186 TIGR03319 YmdA_YtgF conserved 96.7 0.08 1.7E-06 64.6 19.5 25 734-758 186-213 (514)
187 KOG1853 LIS1-interacting prote 96.7 0.06 1.3E-06 59.9 16.3 29 656-684 92-120 (333)
188 TIGR00634 recN DNA repair prot 96.7 0.048 1E-06 66.8 17.3 67 676-742 301-375 (563)
189 KOG0978 E3 ubiquitin ligase in 96.6 0.16 3.5E-06 63.6 21.3 73 638-710 528-600 (698)
190 PRK00106 hypothetical protein; 96.6 0.1 2.3E-06 63.9 19.4 24 735-758 208-234 (535)
191 COG2433 Uncharacterized conser 96.6 0.043 9.3E-07 67.0 15.8 75 676-759 474-556 (652)
192 KOG4302 Microtubule-associated 96.6 0.081 1.7E-06 65.9 18.3 84 667-750 101-204 (660)
193 KOG0971 Microtubule-associated 96.6 0.073 1.6E-06 67.1 17.6 69 618-686 373-441 (1243)
194 KOG0976 Rho/Rac1-interacting s 96.5 0.12 2.6E-06 64.5 19.0 33 635-667 271-303 (1265)
195 PF13870 DUF4201: Domain of un 96.5 0.31 6.7E-06 51.4 20.0 57 657-713 79-135 (177)
196 KOG4673 Transcription factor T 96.5 0.074 1.6E-06 65.5 17.0 131 611-745 407-569 (961)
197 PF10481 CENP-F_N: Cenp-F N-te 96.5 0.074 1.6E-06 59.8 15.8 97 611-707 16-119 (307)
198 PF14915 CCDC144C: CCDC144C pr 96.5 0.22 4.7E-06 56.9 19.6 68 605-672 30-101 (305)
199 PF13514 AAA_27: AAA domain 96.5 0.1 2.3E-06 68.7 19.8 61 672-732 892-952 (1111)
200 PF06818 Fez1: Fez1; InterPro 96.5 0.13 2.9E-06 56.0 17.1 90 613-702 17-106 (202)
201 KOG0994 Extracellular matrix g 96.5 0.18 3.9E-06 65.0 20.4 44 687-732 1658-1701(1758)
202 COG5185 HEC1 Protein involved 96.5 0.14 2.9E-06 61.2 18.3 30 717-746 397-429 (622)
203 COG1842 PspA Phage shock prote 96.5 0.44 9.5E-06 52.8 21.3 116 589-707 28-144 (225)
204 PF05701 WEMBL: Weak chloropla 96.5 0.15 3.2E-06 62.4 19.4 7 628-634 310-316 (522)
205 PF10498 IFT57: Intra-flagella 96.5 0.063 1.4E-06 62.9 15.6 103 596-708 217-319 (359)
206 PRK01156 chromosome segregatio 96.4 0.084 1.8E-06 67.7 18.2 12 718-729 714-725 (895)
207 PF15397 DUF4618: Domain of un 96.4 0.17 3.6E-06 57.0 18.1 28 607-634 82-109 (258)
208 KOG0976 Rho/Rac1-interacting s 96.4 0.26 5.6E-06 61.8 20.9 19 761-779 504-522 (1265)
209 KOG0037 Ca2+-binding protein, 96.4 0.0093 2E-07 65.1 8.1 70 438-507 56-128 (221)
210 PF00036 EF-hand_1: EF hand; 96.4 0.0031 6.8E-08 48.5 3.3 27 440-466 1-27 (29)
211 PF09789 DUF2353: Uncharacteri 96.4 0.13 2.9E-06 59.3 17.2 135 591-734 71-217 (319)
212 PF05010 TACC: Transforming ac 96.3 0.45 9.8E-06 52.2 20.4 26 717-742 179-204 (207)
213 KOG0964 Structural maintenance 96.3 0.092 2E-06 66.8 16.8 109 635-745 259-381 (1200)
214 KOG0946 ER-Golgi vesicle-tethe 96.3 0.18 3.9E-06 63.3 19.1 11 317-327 344-354 (970)
215 PF14915 CCDC144C: CCDC144C pr 96.3 0.32 7E-06 55.6 19.6 117 622-740 139-255 (305)
216 KOG2129 Uncharacterized conser 96.3 0.18 3.9E-06 59.4 17.9 42 658-699 182-224 (552)
217 PF10473 CENP-F_leu_zip: Leuci 96.3 0.25 5.4E-06 51.2 17.2 24 614-637 11-34 (140)
218 PRK01156 chromosome segregatio 96.3 0.3 6.4E-06 62.9 21.8 18 686-703 308-325 (895)
219 KOG3478 Prefoldin subunit 6, K 96.3 0.11 2.5E-06 51.6 13.9 97 611-711 3-111 (120)
220 KOG0979 Structural maintenance 96.3 0.19 4.1E-06 64.4 19.3 22 613-634 202-223 (1072)
221 PRK11281 hypothetical protein; 96.3 0.038 8.3E-07 72.5 13.9 51 658-708 131-181 (1113)
222 PF13405 EF-hand_6: EF-hand do 96.3 0.004 8.7E-08 47.7 3.2 27 440-466 1-27 (31)
223 PF13870 DUF4201: Domain of un 96.3 0.099 2.1E-06 55.1 14.5 82 661-751 62-143 (177)
224 PRK10869 recombination and rep 96.2 0.15 3.2E-06 62.7 18.0 54 691-744 318-372 (553)
225 PRK12309 transaldolase/EF-hand 96.2 0.0093 2E-07 70.3 7.4 55 9-74 333-387 (391)
226 PF06160 EzrA: Septation ring 96.2 0.27 5.8E-06 60.7 20.0 125 613-741 82-215 (560)
227 PRK10698 phage shock protein P 96.2 0.34 7.3E-06 53.4 18.8 46 659-704 96-141 (222)
228 KOG0995 Centromere-associated 96.2 0.098 2.1E-06 63.7 15.8 98 584-685 217-324 (581)
229 PF09304 Cortex-I_coil: Cortex 96.2 0.19 4.1E-06 49.9 14.8 86 611-710 7-92 (107)
230 KOG0999 Microtubule-associated 96.2 0.18 4E-06 61.0 17.5 129 611-746 105-249 (772)
231 TIGR03017 EpsF chain length de 96.2 0.14 3.1E-06 60.3 16.7 39 651-689 257-295 (444)
232 PF10146 zf-C4H2: Zinc finger- 96.2 0.058 1.3E-06 59.7 12.6 57 689-747 52-109 (230)
233 KOG4673 Transcription factor T 96.2 0.28 6.2E-06 60.6 19.1 16 483-498 245-260 (961)
234 COG4942 Membrane-bound metallo 96.2 0.2 4.3E-06 59.7 17.5 18 932-949 350-370 (420)
235 PF09789 DUF2353: Uncharacteri 96.1 0.3 6.5E-06 56.5 18.5 85 648-732 72-180 (319)
236 KOG0038 Ca2+-binding kinase in 96.1 0.0072 1.6E-07 62.6 5.1 62 441-505 110-178 (189)
237 TIGR02680 conserved hypothetic 96.1 0.28 6.1E-06 66.1 20.9 119 627-747 276-402 (1353)
238 PF04849 HAP1_N: HAP1 N-termin 96.1 0.23 5.1E-06 57.0 17.2 94 638-733 210-303 (306)
239 KOG0377 Protein serine/threoni 96.1 0.012 2.7E-07 69.1 7.3 68 9-76 546-619 (631)
240 KOG0018 Structural maintenance 96.1 0.2 4.3E-06 64.6 18.1 79 607-685 677-755 (1141)
241 KOG4807 F-actin binding protei 96.1 0.23 4.9E-06 58.2 17.1 50 654-703 420-469 (593)
242 KOG0804 Cytoplasmic Zn-finger 96.1 0.15 3.3E-06 60.6 16.0 32 651-682 371-402 (493)
243 PRK03947 prefoldin subunit alp 96.1 0.13 2.9E-06 52.1 13.7 36 613-648 6-41 (140)
244 TIGR01000 bacteriocin_acc bact 96.0 0.2 4.4E-06 59.8 17.3 21 721-741 237-257 (457)
245 PF10174 Cast: RIM-binding pro 96.0 0.42 9.2E-06 61.0 20.7 82 659-741 375-457 (775)
246 PF05667 DUF812: Protein of un 96.0 0.15 3.2E-06 63.4 16.3 11 129-139 75-85 (594)
247 PF06008 Laminin_I: Laminin Do 96.0 0.24 5.1E-06 55.3 16.5 72 612-683 44-115 (264)
248 PF13514 AAA_27: AAA domain 96.0 0.25 5.5E-06 65.2 19.4 29 716-744 299-327 (1111)
249 PRK10884 SH3 domain-containing 96.0 0.085 1.8E-06 57.6 12.6 40 659-698 129-168 (206)
250 cd05024 S-100A10 S-100A10: A s 96.0 0.046 9.9E-07 52.8 9.3 69 10-79 8-83 (91)
251 KOG0036 Predicted mitochondria 95.9 0.017 3.7E-07 67.8 7.2 65 437-501 80-146 (463)
252 PF10481 CENP-F_N: Cenp-F N-te 95.9 0.51 1.1E-05 53.4 18.2 102 607-708 33-134 (307)
253 KOG0243 Kinesin-like protein [ 95.9 0.46 1E-05 61.7 20.1 18 719-736 566-583 (1041)
254 TIGR02338 gimC_beta prefoldin, 95.9 0.18 4E-06 49.5 13.3 34 615-648 5-38 (110)
255 KOG0040 Ca2+-binding actin-bun 95.9 0.015 3.3E-07 75.6 7.2 68 432-499 2246-2322(2399)
256 PF04012 PspA_IM30: PspA/IM30 95.8 0.32 7E-06 52.6 16.4 34 677-710 99-132 (221)
257 KOG0036 Predicted mitochondria 95.8 0.03 6.6E-07 65.8 9.0 71 433-503 8-81 (463)
258 PRK10476 multidrug resistance 95.8 0.25 5.4E-06 56.7 16.4 26 680-705 156-181 (346)
259 KOG0946 ER-Golgi vesicle-tethe 95.8 0.25 5.5E-06 62.1 17.1 42 631-672 675-716 (970)
260 PF14662 CCDC155: Coiled-coil 95.8 1.1 2.4E-05 48.6 19.8 32 595-626 21-56 (193)
261 PF07106 TBPIP: Tat binding pr 95.8 0.14 3.1E-06 53.5 13.1 93 648-741 72-166 (169)
262 COG2433 Uncharacterized conser 95.8 0.15 3.2E-06 62.7 14.7 30 716-745 484-513 (652)
263 KOG4674 Uncharacterized conser 95.8 0.44 9.6E-06 64.8 20.3 117 597-713 956-1090(1822)
264 PF15290 Syntaphilin: Golgi-lo 95.8 0.12 2.6E-06 58.3 13.0 52 691-742 118-173 (305)
265 PF06120 Phage_HK97_TLTM: Tail 95.8 0.21 4.5E-06 57.4 15.2 42 692-735 129-170 (301)
266 COG4717 Uncharacterized conser 95.8 0.3 6.6E-06 61.9 17.5 31 605-635 619-649 (984)
267 PF10146 zf-C4H2: Zinc finger- 95.8 0.21 4.6E-06 55.4 14.7 40 629-668 34-73 (230)
268 PF05278 PEARLI-4: Arabidopsis 95.7 0.35 7.6E-06 54.8 16.4 95 628-732 167-261 (269)
269 cd00632 Prefoldin_beta Prefold 95.7 0.19 4E-06 49.0 12.6 31 618-648 4-34 (105)
270 KOG0979 Structural maintenance 95.7 0.32 6.9E-06 62.5 17.6 57 611-667 274-330 (1072)
271 KOG4302 Microtubule-associated 95.7 0.25 5.4E-06 61.8 16.4 79 611-689 52-137 (660)
272 PF06785 UPF0242: Uncharacteri 95.7 0.7 1.5E-05 53.5 18.6 54 657-710 136-189 (401)
273 KOG4643 Uncharacterized coiled 95.7 0.9 1.9E-05 58.6 21.0 63 642-704 496-558 (1195)
274 PF11932 DUF3450: Protein of u 95.7 1.1 2.4E-05 49.8 19.9 49 659-707 67-115 (251)
275 KOG0612 Rho-associated, coiled 95.7 0.25 5.5E-06 64.4 16.6 23 474-496 311-336 (1317)
276 TIGR02971 heterocyst_DevB ABC 95.6 0.51 1.1E-05 53.5 17.6 25 720-744 179-203 (327)
277 KOG4593 Mitotic checkpoint pro 95.6 0.77 1.7E-05 57.4 19.9 22 716-737 278-299 (716)
278 PF15066 CAGE1: Cancer-associa 95.6 0.93 2E-05 54.5 19.7 65 677-741 447-513 (527)
279 PRK09841 cryptic autophosphory 95.6 0.28 6.2E-06 62.0 16.9 126 623-748 263-401 (726)
280 PF11559 ADIP: Afadin- and alp 95.6 0.21 4.6E-06 51.3 13.0 48 659-706 63-110 (151)
281 KOG4223 Reticulocalbin, calume 95.6 0.015 3.2E-07 66.5 5.1 63 9-71 76-140 (325)
282 COG0497 RecN ATPase involved i 95.6 0.89 1.9E-05 56.2 20.1 52 692-743 320-372 (557)
283 KOG0963 Transcription factor/C 95.5 0.6 1.3E-05 57.7 18.5 18 773-791 345-362 (629)
284 PF05911 DUF869: Plant protein 95.5 0.37 7.9E-06 61.5 17.4 75 669-743 673-756 (769)
285 PF10168 Nup88: Nuclear pore c 95.5 0.16 3.5E-06 64.2 14.4 19 691-709 640-658 (717)
286 PF13805 Pil1: Eisosome compon 95.5 1 2.3E-05 51.2 18.9 95 636-730 84-182 (271)
287 PF05911 DUF869: Plant protein 95.5 0.86 1.9E-05 58.3 20.3 88 614-708 604-691 (769)
288 PF10475 DUF2450: Protein of u 95.5 0.88 1.9E-05 51.6 18.6 67 676-742 125-194 (291)
289 PF13202 EF-hand_5: EF hand; P 95.5 0.015 3.3E-07 43.3 3.1 24 441-464 1-24 (25)
290 PRK10361 DNA recombination pro 95.4 1.3 2.9E-05 53.8 20.8 36 691-726 141-178 (475)
291 PF00769 ERM: Ezrin/radixin/mo 95.4 0.4 8.6E-06 53.6 15.4 41 688-730 80-120 (246)
292 KOG2129 Uncharacterized conser 95.4 0.57 1.2E-05 55.4 16.9 25 651-675 204-228 (552)
293 PF14988 DUF4515: Domain of un 95.4 2.5 5.4E-05 46.4 21.0 64 602-665 35-102 (206)
294 PF09731 Mitofilin: Mitochondr 95.4 1.7 3.6E-05 53.7 22.0 27 752-779 453-480 (582)
295 PRK09343 prefoldin subunit bet 95.4 0.43 9.3E-06 48.0 14.0 36 613-648 7-42 (121)
296 PRK10884 SH3 domain-containing 95.3 0.15 3.3E-06 55.7 11.5 9 617-625 97-105 (206)
297 PF06160 EzrA: Septation ring 95.3 0.5 1.1E-05 58.3 17.4 24 718-741 405-428 (560)
298 PRK15178 Vi polysaccharide exp 95.3 0.27 6E-06 59.0 14.6 135 611-752 247-397 (434)
299 KOG0612 Rho-associated, coiled 95.3 0.34 7.5E-06 63.2 16.2 77 605-681 615-693 (1317)
300 KOG3091 Nuclear pore complex, 95.3 0.82 1.8E-05 55.3 18.3 86 611-700 360-445 (508)
301 TIGR02977 phageshock_pspA phag 95.3 0.79 1.7E-05 50.2 17.0 36 676-711 99-134 (219)
302 PF09731 Mitofilin: Mitochondr 95.3 1.2 2.5E-05 55.0 20.4 23 719-741 377-399 (582)
303 PF12252 SidE: Dot/Icm substra 95.3 0.75 1.6E-05 59.4 18.6 36 715-750 1199-1234(1439)
304 COG5185 HEC1 Protein involved 95.3 0.38 8.1E-06 57.6 15.1 24 605-628 287-310 (622)
305 KOG1899 LAR transmembrane tyro 95.3 0.44 9.5E-06 58.6 15.9 124 614-744 140-269 (861)
306 PF15272 BBP1_C: Spindle pole 95.3 1.7 3.6E-05 47.5 18.9 114 666-782 69-191 (196)
307 PF10591 SPARC_Ca_bdg: Secrete 95.2 0.008 1.7E-07 59.5 1.4 61 437-497 52-112 (113)
308 COG3206 GumC Uncharacterized p 95.2 0.49 1.1E-05 56.6 16.5 44 664-707 287-330 (458)
309 PF04949 Transcrip_act: Transc 95.2 1.2 2.6E-05 46.6 16.8 49 659-707 81-129 (159)
310 PF04582 Reo_sigmaC: Reovirus 95.2 0.015 3.2E-07 66.9 3.6 124 607-733 29-153 (326)
311 PF08580 KAR9: Yeast cortical 95.2 0.68 1.5E-05 58.6 18.1 110 638-750 221-347 (683)
312 KOG4460 Nuclear pore complex, 95.2 0.78 1.7E-05 55.9 17.5 127 611-741 586-730 (741)
313 PRK11519 tyrosine kinase; Prov 95.2 0.53 1.1E-05 59.7 17.3 122 625-746 265-399 (719)
314 PF12795 MscS_porin: Mechanose 95.1 0.57 1.2E-05 51.7 15.5 99 609-709 41-139 (240)
315 KOG0018 Structural maintenance 95.1 1.4 3.1E-05 57.2 20.5 104 585-689 649-752 (1141)
316 COG1730 GIM5 Predicted prefold 95.1 0.76 1.6E-05 48.0 15.2 35 613-647 6-40 (145)
317 PRK10698 phage shock protein P 95.1 1 2.2E-05 49.8 17.1 86 643-733 94-179 (222)
318 PF09730 BicD: Microtubule-ass 95.1 0.65 1.4E-05 58.8 17.5 47 686-732 100-147 (717)
319 PF10212 TTKRSYEDQ: Predicted 95.1 0.35 7.6E-06 58.8 14.5 74 627-703 441-514 (518)
320 PF05010 TACC: Transforming ac 95.1 1.6 3.4E-05 48.1 18.3 41 697-737 143-185 (207)
321 PF12072 DUF3552: Domain of un 95.1 2.8 6.1E-05 45.5 20.1 14 617-630 57-70 (201)
322 TIGR00998 8a0101 efflux pump m 95.0 0.63 1.4E-05 52.7 15.8 8 723-730 189-196 (334)
323 PF13405 EF-hand_6: EF-hand do 95.0 0.029 6.3E-07 43.0 3.6 27 12-38 2-28 (31)
324 PF07111 HCR: Alpha helical co 95.0 1.8 4E-05 54.3 20.5 118 593-710 482-616 (739)
325 KOG4572 Predicted DNA-binding 95.0 1.1 2.3E-05 56.7 18.3 70 623-694 964-1034(1424)
326 PF02050 FliJ: Flagellar FliJ 95.0 1.6 3.6E-05 41.2 16.2 63 612-674 18-85 (123)
327 TIGR00634 recN DNA repair prot 95.0 0.9 1.9E-05 56.0 18.1 48 690-746 346-394 (563)
328 PF12325 TMF_TATA_bd: TATA ele 95.0 0.6 1.3E-05 47.3 13.7 49 685-742 70-118 (120)
329 KOG0288 WD40 repeat protein Ti 95.0 0.45 9.8E-06 56.3 14.6 56 611-666 25-80 (459)
330 PF06818 Fez1: Fez1; InterPro 95.0 1 2.2E-05 49.4 16.3 64 595-658 20-83 (202)
331 PF09755 DUF2046: Uncharacteri 95.0 1.3 2.7E-05 51.3 17.8 55 656-710 114-169 (310)
332 PF09304 Cortex-I_coil: Cortex 94.9 0.55 1.2E-05 46.7 12.9 22 718-739 84-105 (107)
333 KOG2751 Beclin-like protein [S 94.9 1.3 2.7E-05 53.1 18.1 154 635-793 198-386 (447)
334 KOG1003 Actin filament-coating 94.9 2.6 5.7E-05 46.0 19.0 40 646-685 58-97 (205)
335 COG3096 MukB Uncharacterized p 94.9 0.66 1.4E-05 58.0 16.0 94 668-761 382-497 (1480)
336 KOG0243 Kinesin-like protein [ 94.8 1.8 3.9E-05 56.6 20.5 14 439-452 166-179 (1041)
337 PF03148 Tektin: Tektin family 94.8 3.3 7.2E-05 49.1 21.5 73 612-684 228-301 (384)
338 PRK03947 prefoldin subunit alp 94.8 0.58 1.3E-05 47.5 13.4 29 611-639 11-39 (140)
339 KOG2751 Beclin-like protein [S 94.8 0.58 1.3E-05 55.8 15.0 123 611-735 141-268 (447)
340 PF05483 SCP-1: Synaptonemal c 94.8 1.7 3.6E-05 54.5 19.2 97 617-713 517-617 (786)
341 KOG0982 Centrosomal protein Nu 94.8 2.2 4.7E-05 51.0 19.3 27 725-751 372-398 (502)
342 PF09787 Golgin_A5: Golgin sub 94.7 0.61 1.3E-05 57.0 15.6 62 638-699 236-311 (511)
343 KOG0978 E3 ubiquitin ligase in 94.7 0.83 1.8E-05 57.6 16.8 17 717-733 598-614 (698)
344 KOG4593 Mitotic checkpoint pro 94.7 3.2 6.9E-05 52.2 21.4 18 724-741 279-296 (716)
345 smart00502 BBC B-Box C-termina 94.6 2.7 5.8E-05 40.4 16.9 20 689-708 78-97 (127)
346 TIGR03794 NHPM_micro_HlyD NHPM 94.6 1.6 3.4E-05 51.8 18.4 24 720-743 227-250 (421)
347 PF01920 Prefoldin_2: Prefoldi 94.6 0.51 1.1E-05 44.9 11.8 30 619-648 4-33 (106)
348 PF13166 AAA_13: AAA domain 94.6 2.1 4.6E-05 53.7 20.4 14 485-498 176-189 (712)
349 PF15294 Leu_zip: Leucine zipp 94.6 0.67 1.5E-05 52.8 14.4 124 611-737 144-277 (278)
350 PRK10361 DNA recombination pro 94.6 4.3 9.3E-05 49.7 21.8 19 716-734 143-161 (475)
351 PF05384 DegS: Sensor protein 94.6 2.1 4.5E-05 45.4 17.0 37 598-634 19-55 (159)
352 KOG4223 Reticulocalbin, calume 94.5 0.065 1.4E-06 61.5 6.4 65 439-503 163-230 (325)
353 PF13202 EF-hand_5: EF hand; P 94.5 0.04 8.6E-07 41.1 3.1 24 13-36 2-25 (25)
354 PRK12704 phosphodiesterase; Pr 94.5 3.5 7.5E-05 50.9 21.4 14 617-630 61-74 (520)
355 PRK00409 recombination and DNA 94.5 1.1 2.3E-05 57.6 17.8 16 719-734 606-621 (782)
356 COG4717 Uncharacterized conser 94.5 2.2 4.7E-05 54.7 19.7 48 676-723 774-821 (984)
357 COG1842 PspA Phage shock prote 94.5 1.5 3.3E-05 48.7 16.6 18 613-630 31-48 (225)
358 PF07798 DUF1640: Protein of u 94.5 2.7 5.9E-05 44.7 18.0 23 650-672 75-97 (177)
359 PRK10476 multidrug resistance 94.5 1.3 2.8E-05 50.9 16.9 18 690-707 159-176 (346)
360 PRK10246 exonuclease subunit S 94.5 1.9 4.2E-05 57.0 20.4 27 719-745 737-763 (1047)
361 cd00176 SPEC Spectrin repeats, 94.5 1.9 4.1E-05 44.0 16.3 57 686-742 149-208 (213)
362 PF10591 SPARC_Ca_bdg: Secrete 94.5 0.018 4E-07 57.0 1.7 62 7-68 51-112 (113)
363 KOG0240 Kinesin (SMY1 subfamil 94.5 1.2 2.7E-05 54.6 17.0 86 660-747 412-504 (607)
364 COG4026 Uncharacterized protei 94.5 0.44 9.5E-06 52.6 12.1 67 646-712 140-206 (290)
365 PRK12705 hypothetical protein; 94.4 1.6 3.6E-05 53.6 18.2 31 734-764 180-213 (508)
366 PRK10929 putative mechanosensi 94.4 2.4 5.1E-05 56.5 20.8 22 722-743 288-309 (1109)
367 PF09728 Taxilin: Myosin-like 94.4 1.1 2.3E-05 51.8 15.8 40 689-730 113-152 (309)
368 KOG0962 DNA repair protein RAD 94.4 1.2 2.6E-05 59.2 17.8 98 613-710 192-295 (1294)
369 COG0419 SbcC ATPase involved i 94.4 2.7 5.9E-05 54.7 21.1 6 460-465 144-149 (908)
370 KOG0239 Kinesin (KAR3 subfamil 94.4 1 2.2E-05 57.0 16.6 24 722-745 302-325 (670)
371 PF15254 CCDC14: Coiled-coil d 94.4 1.1 2.4E-05 56.6 16.6 79 658-738 465-550 (861)
372 PF06120 Phage_HK97_TLTM: Tail 94.3 1.1 2.3E-05 51.9 15.4 82 611-692 86-171 (301)
373 PRK10246 exonuclease subunit S 94.3 3.9 8.6E-05 54.2 22.6 32 677-708 778-809 (1047)
374 PRK00286 xseA exodeoxyribonucl 94.3 1.7 3.7E-05 51.9 17.8 61 668-736 326-388 (438)
375 TIGR01010 BexC_CtrB_KpsE polys 94.3 4 8.6E-05 47.5 20.3 58 582-641 141-198 (362)
376 PRK03598 putative efflux pump 94.3 1.1 2.4E-05 51.1 15.6 54 685-742 147-200 (331)
377 PF07851 TMPIT: TMPIT-like pro 94.3 0.27 5.9E-06 57.1 10.7 88 613-706 4-91 (330)
378 PLN03229 acetyl-coenzyme A car 94.3 3.5 7.5E-05 52.5 20.7 36 694-730 670-705 (762)
379 PF09787 Golgin_A5: Golgin sub 94.3 1.3 2.8E-05 54.2 17.0 32 606-637 214-245 (511)
380 PRK10869 recombination and rep 94.2 3.3 7.1E-05 51.4 20.5 42 601-642 159-200 (553)
381 KOG4677 Golgi integral membran 94.2 0.66 1.4E-05 55.4 13.6 135 600-743 242-384 (554)
382 PF05622 HOOK: HOOK protein; 94.2 0.013 2.8E-07 73.6 0.0 60 614-674 268-327 (713)
383 TIGR03319 YmdA_YtgF conserved 94.2 5.2 0.00011 49.4 21.9 8 762-769 191-198 (514)
384 KOG4403 Cell surface glycoprot 94.2 2.7 5.9E-05 50.2 18.4 27 439-465 68-94 (575)
385 PF06248 Zw10: Centromere/kine 94.1 1.3 2.8E-05 54.9 16.9 61 649-710 77-142 (593)
386 COG3206 GumC Uncharacterized p 94.1 2.1 4.5E-05 51.4 18.1 45 689-733 341-386 (458)
387 PF05266 DUF724: Protein of un 94.1 1.9 4.2E-05 46.8 16.0 32 676-707 131-162 (190)
388 cd00890 Prefoldin Prefoldin is 94.1 0.76 1.7E-05 45.3 12.0 33 676-708 94-126 (129)
389 COG4477 EzrA Negative regulato 94.1 1.7 3.7E-05 53.2 17.0 32 679-710 378-409 (570)
390 TIGR02231 conserved hypothetic 94.1 0.31 6.8E-06 59.3 11.2 98 611-711 76-173 (525)
391 cd07648 F-BAR_FCHO The F-BAR ( 94.0 5.3 0.00012 44.6 19.9 30 681-710 114-143 (261)
392 PRK00106 hypothetical protein; 94.0 7.7 0.00017 48.2 22.7 9 762-770 212-220 (535)
393 PF10267 Tmemb_cc2: Predicted 94.0 1.1 2.3E-05 53.6 14.9 14 690-703 305-318 (395)
394 KOG1937 Uncharacterized conser 93.9 2.6 5.7E-05 50.7 17.7 25 717-741 386-414 (521)
395 PF02994 Transposase_22: L1 tr 93.9 0.063 1.4E-06 63.0 4.8 44 667-710 142-185 (370)
396 TIGR02473 flagell_FliJ flagell 93.9 1.9 4.1E-05 43.1 14.5 18 613-630 27-44 (141)
397 TIGR02338 gimC_beta prefoldin, 93.9 0.93 2E-05 44.7 12.1 32 613-644 10-41 (110)
398 PF08581 Tup_N: Tup N-terminal 93.9 0.3 6.5E-06 46.2 8.3 67 659-730 8-74 (79)
399 KOG4360 Uncharacterized coiled 93.8 1.5 3.2E-05 53.3 15.7 108 635-744 206-318 (596)
400 PF12072 DUF3552: Domain of un 93.8 9.2 0.0002 41.6 20.6 11 613-623 38-48 (201)
401 KOG2685 Cystoskeletal protein 93.8 3 6.6E-05 49.8 18.0 65 611-675 254-319 (421)
402 KOG0239 Kinesin (KAR3 subfamil 93.8 0.81 1.8E-05 57.8 14.3 50 659-708 224-273 (670)
403 PLN03229 acetyl-coenzyme A car 93.8 1.5 3.3E-05 55.5 16.3 60 695-758 576-639 (762)
404 KOG1850 Myosin-like coiled-coi 93.8 5 0.00011 46.7 18.9 22 605-626 107-129 (391)
405 PF14282 FlxA: FlxA-like prote 93.7 0.25 5.4E-06 48.7 7.9 32 674-705 49-80 (106)
406 KOG0042 Glycerol-3-phosphate d 93.7 0.12 2.6E-06 63.0 6.7 79 424-503 579-659 (680)
407 PF01576 Myosin_tail_1: Myosin 93.7 0.018 4E-07 73.8 0.0 38 752-794 555-592 (859)
408 PF05335 DUF745: Protein of un 93.7 4.1 8.9E-05 44.4 17.5 13 719-731 157-169 (188)
409 TIGR03545 conserved hypothetic 93.7 1.7 3.8E-05 53.9 16.7 47 626-672 190-236 (555)
410 TIGR02231 conserved hypothetic 93.7 0.51 1.1E-05 57.5 12.1 15 719-733 158-172 (525)
411 PF14362 DUF4407: Domain of un 93.7 1.3 2.8E-05 50.2 14.5 29 679-707 185-213 (301)
412 COG4913 Uncharacterized protei 93.6 2.6 5.7E-05 53.1 17.6 127 650-783 350-493 (1104)
413 COG4026 Uncharacterized protei 93.6 1.2 2.7E-05 49.2 13.5 43 663-705 164-206 (290)
414 COG0497 RecN ATPase involved i 93.6 2.1 4.5E-05 53.1 16.9 122 608-745 257-389 (557)
415 PRK09343 prefoldin subunit bet 93.6 1.7 3.8E-05 43.8 13.7 30 618-647 5-34 (121)
416 PRK14011 prefoldin subunit alp 93.6 1.6 3.5E-05 45.6 13.7 36 613-648 3-38 (144)
417 PF05557 MAD: Mitotic checkpoi 93.6 0.02 4.4E-07 72.0 0.0 10 613-622 93-102 (722)
418 PF13166 AAA_13: AAA domain 93.5 3.3 7.1E-05 52.0 19.1 55 690-746 410-474 (712)
419 COG5293 Predicted ATPase [Gene 93.5 1.5 3.3E-05 52.7 14.9 48 690-741 316-363 (591)
420 COG1730 GIM5 Predicted prefold 93.5 1.6 3.5E-05 45.7 13.5 21 689-709 93-113 (145)
421 KOG1103 Predicted coiled-coil 93.5 2.7 5.8E-05 49.1 16.3 55 689-745 244-298 (561)
422 PF05557 MAD: Mitotic checkpoi 93.5 0.62 1.3E-05 59.1 12.7 53 689-741 565-627 (722)
423 PF01920 Prefoldin_2: Prefoldi 93.4 0.92 2E-05 43.2 11.0 33 678-710 7-39 (106)
424 PF09728 Taxilin: Myosin-like 93.4 7.2 0.00016 45.3 20.0 61 676-738 244-304 (309)
425 KOG1854 Mitochondrial inner me 93.3 3.4 7.3E-05 51.6 17.9 42 679-721 392-436 (657)
426 PF07106 TBPIP: Tat binding pr 93.2 0.41 9E-06 50.1 9.0 64 678-741 74-137 (169)
427 PF10498 IFT57: Intra-flagella 93.2 5.7 0.00012 47.1 19.1 68 640-707 240-311 (359)
428 PTZ00464 SNF-7-like protein; P 93.2 8.8 0.00019 42.5 19.3 20 689-708 130-149 (211)
429 TIGR03794 NHPM_micro_HlyD NHPM 93.2 3.7 8.1E-05 48.7 17.8 22 716-737 230-251 (421)
430 PF15294 Leu_zip: Leucine zipp 93.2 0.66 1.4E-05 52.9 11.0 31 676-706 190-220 (278)
431 PF05700 BCAS2: Breast carcino 93.2 0.88 1.9E-05 50.0 11.8 28 683-710 175-202 (221)
432 KOG2991 Splicing regulator [RN 93.2 3.9 8.5E-05 46.3 16.5 115 588-707 169-309 (330)
433 cd07673 F-BAR_FCHO2 The F-BAR 93.2 9 0.00019 43.5 19.9 29 681-709 121-149 (269)
434 PF15066 CAGE1: Cancer-associa 93.1 4.8 0.0001 48.7 18.2 72 611-682 343-424 (527)
435 PF05384 DegS: Sensor protein 93.1 11 0.00023 40.2 19.1 92 616-707 23-115 (159)
436 TIGR00293 prefoldin, archaeal 93.1 0.69 1.5E-05 46.0 10.0 32 617-648 3-34 (126)
437 KOG1962 B-cell receptor-associ 93.1 0.9 1.9E-05 50.2 11.5 63 646-708 149-211 (216)
438 KOG0962 DNA repair protein RAD 93.1 3.2 7E-05 55.4 18.3 11 772-782 1092-1102(1294)
439 KOG1003 Actin filament-coating 93.1 8.3 0.00018 42.3 18.4 66 601-666 30-99 (205)
440 PF14992 TMCO5: TMCO5 family 93.1 2.1 4.5E-05 49.0 14.6 26 714-739 152-179 (280)
441 KOG3809 Microtubule-binding pr 93.1 1.7 3.8E-05 51.8 14.4 52 624-675 476-527 (583)
442 PF12329 TMF_DNA_bd: TATA elem 93.0 0.67 1.4E-05 43.2 9.0 62 649-710 6-67 (74)
443 PF15556 Zwint: ZW10 interacto 93.0 4 8.6E-05 44.9 15.9 26 605-630 58-83 (252)
444 TIGR00998 8a0101 efflux pump m 93.0 1.9 4.1E-05 48.9 14.6 17 726-742 185-201 (334)
445 PF07200 Mod_r: Modifier of ru 93.0 11 0.00024 38.7 18.8 85 622-706 29-115 (150)
446 PF07200 Mod_r: Modifier of ru 93.0 1.5 3.3E-05 44.9 12.5 31 659-689 52-82 (150)
447 PF09602 PhaP_Bmeg: Polyhydrox 93.0 4.7 0.0001 43.1 16.1 91 589-685 9-101 (165)
448 PF15450 DUF4631: Domain of un 93.0 0.91 2E-05 55.3 12.3 129 613-741 20-152 (531)
449 COG1382 GimC Prefoldin, chaper 92.9 1.3 2.7E-05 45.1 11.4 32 679-710 80-111 (119)
450 PF13863 DUF4200: Domain of un 92.9 5 0.00011 39.8 15.6 38 670-707 68-105 (126)
451 TIGR01541 tape_meas_lam_C phag 92.9 2.8 6E-05 49.1 15.8 6 784-789 204-209 (332)
452 PF05278 PEARLI-4: Arabidopsis 92.9 4.6 0.0001 46.1 16.9 50 659-708 204-253 (269)
453 TIGR03752 conj_TIGR03752 integ 92.8 0.83 1.8E-05 55.2 11.8 16 965-980 346-361 (472)
454 COG5283 Phage-related tail pro 92.8 3.4 7.4E-05 54.6 17.8 75 635-709 58-132 (1213)
455 PF07889 DUF1664: Protein of u 92.8 1.6 3.5E-05 44.7 12.1 75 617-694 47-121 (126)
456 KOG4657 Uncharacterized conser 92.8 4 8.6E-05 45.5 15.8 11 767-777 150-160 (246)
457 PF05622 HOOK: HOOK protein; 92.8 0.031 6.8E-07 70.3 0.0 50 659-708 329-381 (713)
458 PF14992 TMCO5: TMCO5 family 92.8 1.2 2.6E-05 50.9 12.2 27 684-710 110-136 (280)
459 TIGR00237 xseA exodeoxyribonuc 92.8 4.8 0.0001 48.5 18.0 7 779-785 393-399 (432)
460 PF13863 DUF4200: Domain of un 92.7 6.2 0.00013 39.1 16.0 69 632-700 37-105 (126)
461 cd07653 F-BAR_CIP4-like The F- 92.7 19 0.0004 39.8 21.9 23 440-465 6-28 (251)
462 TIGR02971 heterocyst_DevB ABC 92.7 6.1 0.00013 45.0 18.0 29 718-750 184-212 (327)
463 PF04912 Dynamitin: Dynamitin 92.7 2.5 5.4E-05 50.0 15.4 56 677-737 330-385 (388)
464 cd00584 Prefoldin_alpha Prefol 92.7 1.8 4E-05 43.2 12.3 32 676-707 94-125 (129)
465 KOG2891 Surface glycoprotein [ 92.7 3.9 8.5E-05 46.6 15.9 12 438-449 175-186 (445)
466 PRK05689 fliJ flagellar biosyn 92.6 4 8.6E-05 41.7 14.8 36 664-699 73-108 (147)
467 PF14073 Cep57_CLD: Centrosome 92.6 6.3 0.00014 42.7 16.6 32 643-674 59-90 (178)
468 KOG3215 Uncharacterized conser 92.6 7.1 0.00015 43.1 17.1 83 659-744 86-181 (222)
469 PF15254 CCDC14: Coiled-coil d 92.6 4.4 9.6E-05 51.6 17.6 103 607-709 449-555 (861)
470 COG2882 FliJ Flagellar biosynt 92.5 4.3 9.4E-05 42.7 15.1 36 613-648 16-51 (148)
471 PF14788 EF-hand_10: EF hand; 92.5 0.25 5.5E-06 43.3 5.2 46 455-500 1-48 (51)
472 PF11180 DUF2968: Protein of u 92.5 1.1 2.5E-05 48.5 11.2 16 719-734 167-182 (192)
473 KOG3215 Uncharacterized conser 92.5 2.6 5.7E-05 46.3 13.8 42 600-641 83-124 (222)
474 cd00176 SPEC Spectrin repeats, 92.5 7 0.00015 39.9 16.6 30 659-688 76-105 (213)
475 PF06810 Phage_GP20: Phage min 92.5 1.8 4E-05 45.5 12.5 16 730-745 119-134 (155)
476 PRK12705 hypothetical protein; 92.5 10 0.00023 46.9 20.5 7 762-768 185-191 (508)
477 KOG0249 LAR-interacting protei 92.5 3.3 7.2E-05 52.1 16.3 54 641-694 216-269 (916)
478 PF05769 DUF837: Protein of un 92.5 14 0.00029 40.1 19.2 47 691-737 129-177 (181)
479 PF07889 DUF1664: Protein of u 92.5 2.2 4.7E-05 43.8 12.5 57 634-690 68-124 (126)
480 PF06705 SF-assemblin: SF-asse 92.5 20 0.00044 39.9 21.2 20 689-708 120-139 (247)
481 PRK15178 Vi polysaccharide exp 92.5 2.2 4.8E-05 51.5 14.6 24 659-682 283-306 (434)
482 PRK07720 fliJ flagellar biosyn 92.4 4.3 9.3E-05 41.5 14.8 118 611-732 14-137 (146)
483 KOG4572 Predicted DNA-binding 92.4 3.2 7E-05 52.7 16.0 24 648-671 1009-1032(1424)
484 PF04582 Reo_sigmaC: Reovirus 92.4 0.11 2.3E-06 60.1 3.6 13 887-899 265-277 (326)
485 PRK00286 xseA exodeoxyribonucl 92.4 3.2 6.9E-05 49.7 15.9 41 689-736 326-366 (438)
486 smart00502 BBC B-Box C-termina 92.4 6.5 0.00014 37.8 15.3 31 678-708 74-104 (127)
487 KOG0046 Ca2+-binding actin-bun 92.4 0.28 6E-06 59.5 7.0 69 5-74 14-87 (627)
488 PF06785 UPF0242: Uncharacteri 92.3 5.1 0.00011 46.8 16.5 141 596-741 82-222 (401)
489 cd07651 F-BAR_PombeCdc15_like 92.3 11 0.00024 41.5 18.9 143 588-741 60-210 (236)
490 PF02403 Seryl_tRNA_N: Seryl-t 92.3 1.9 4.2E-05 41.8 11.6 93 585-681 2-100 (108)
491 PF10046 BLOC1_2: Biogenesis o 92.3 2.5 5.4E-05 41.2 12.3 85 625-709 12-99 (99)
492 TIGR03752 conj_TIGR03752 integ 92.3 1.1 2.3E-05 54.4 11.7 81 615-695 61-142 (472)
493 KOG2008 BTK-associated SH3-dom 92.3 3.5 7.6E-05 47.7 15.0 162 584-754 18-193 (426)
494 PF02994 Transposase_22: L1 tr 92.3 0.21 4.6E-06 58.7 6.0 125 592-718 65-193 (370)
495 PF06005 DUF904: Protein of un 92.3 1.6 3.5E-05 40.7 10.4 67 615-681 6-72 (72)
496 PF03962 Mnd1: Mnd1 family; I 92.3 3.7 8E-05 44.4 14.7 102 606-708 62-167 (188)
497 PF00435 Spectrin: Spectrin re 92.3 1.8 3.8E-05 39.4 10.7 100 628-743 2-103 (105)
498 PF14197 Cep57_CLD_2: Centroso 92.2 1.2 2.6E-05 41.2 9.4 67 611-677 3-69 (69)
499 KOG4065 Uncharacterized conser 92.2 0.22 4.7E-06 50.3 5.0 54 445-498 73-142 (144)
500 KOG2196 Nuclear porin [Nuclear 92.2 25 0.00053 39.9 20.9 164 580-743 66-249 (254)
No 1
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-47 Score=463.37 Aligned_cols=585 Identities=29% Similarity=0.391 Sum_probs=374.1
Q ss_pred CcccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhcCCCCCh
Q 000940 5 TATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKRELTP 84 (1216)
Q Consensus 5 taee~~~Y~~vF~~lD~DgDGkISg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G~elsp 84 (1216)
.+.+..+|+.+|+.+|+.++|+|+|.+++.||..+||+..+|++||.++|..+.|+|++.+||+|||||+++|+|++++.
T Consensus 6 ~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~ 85 (847)
T KOG0998|consen 6 SPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSA 85 (847)
T ss_pred CCCccchHHHhhhccCcccCCcccHHHhhhhhhccccchhhhhccccccccccCCccccccccccchHhhhhhcccCcCc
Confidence 56777999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred hhhhhccCCCccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 000940 85 DIVKAALYGPASARIPAPQINLAAMPSSHSRVGAPASQVSGAPSPQNVSVRGPQGLGNASTNQQSPPSQSNHFVRTPQAV 164 (1216)
Q Consensus 85 e~Lp~~L~~Ps~~~iP~P~l~~~~~p~p~~~~~~~~~~~~~~~~~q~~~~~g~~~~~~~~~~qq~~p~~~~~~~r~~~~~ 164 (1216)
+.+ .++....|+|+++....|.++.+..++. ++ ..+....+++....+. ++
T Consensus 86 ~~~-----~~~~~~pp~~~~~~~~~~~~~~~~~~s~---------------~~-~~p~~~~qe~aky~q~------f~-- 136 (847)
T KOG0998|consen 86 KKV-----LPASAVPPPPKISHDTSPPSRPSSSTSA---------------AP-FVPAITPQEQAKYDQI------FR-- 136 (847)
T ss_pred ccc-----ccccCCCCCCccCccCCCcccCCCCCCC---------------cc-cCCCCCHHHHHHHHHH------Hh--
Confidence 765 3456777777777766665544322111 00 1112222222221111 11
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCCCCCCCCCcccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCC
Q 000940 165 LPGTTLHPQQVLSGQSMPSGGTMTAPRPPTSNVSTDWLGGSTVSPLAGSTTQLPNRGSSPSLPQEGFGLPASSLAPSVQP 244 (1216)
Q Consensus 165 ~~~~~~~P~~~~~~~g~~~gG~~~~~~~~~s~l~~~~l~~~~~~~p~g~~~~~~~~~~~p~~~~~~f~~~~~~~~~~~~~ 244 (1216)
.+.|. +|+ +.|+.+++++++++|+.+|||.+| .++++++.+.+++.+|.++|.++.-.+..
T Consensus 137 ----s~~p~-----~g~-~sg~~~~pil~~s~Lp~~~l~~iw---------~l~d~d~~g~Ld~~ef~~am~l~~~~l~~ 197 (847)
T KOG0998|consen 137 ----SLSPS-----NGL-LSGDKAKPILLNSKLPSDVLGRIW---------ELSDIDKDGNLDRDEFAVAMHLINDLLNG 197 (847)
T ss_pred ----ccCCC-----CCc-cccchhhhhhhcCCCChhhhcccc---------ccccccccCCCChhhhhhhhhHHHHHhhc
Confidence 22222 677 899999999999999999999998 68999999999988888755554322111
Q ss_pred CCCCCCCCCCCCCCCCccccccCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceeccCCCC
Q 000940 245 RPPITSGGRAGSPLAGTTSQVSDRGISASSTLDRFGLPASSVAPSVQPRPPGTSAQTPATAPKPQAPDSKSLVVSGNGFS 324 (1216)
Q Consensus 245 ~~~~~~~~~~~~p~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~~~~~~~~~s~~~~p~~~~~~~~~~~k~~~~~gng~~ 324 (1216)
. ..++|. -+....++| .. ..+...+..++
T Consensus 198 ~-------------------------------------~~p~P~-----~~p~~lIpp--------s~-~~~~~~~~~~~ 226 (847)
T KOG0998|consen 198 N-------------------------------------SEPVPS-----RLPPSLIPP--------SK-SELSANSSSKA 226 (847)
T ss_pred c-------------------------------------cCCCCc-----cCCcccCCc--------ch-hcccccCcccc
Confidence 0 112221 000011222 11 11122222233
Q ss_pred CCCccCCcccCCCCCCCCCCccCCCCCCCCCccCCCCCCCCCCCCCCCCccccccCCCCCCCccccCCcccccccccccc
Q 000940 325 SDSLFGDVFSASPVQPKQDVAISGSVPTSTASVPASPAPKPSLKAGPVEPVQHAFSQPPVGGQYQQGQSAGKQNQQFAVK 404 (1216)
Q Consensus 325 S~~~~gd~fsa~p~~~~~~~~~~~~~p~s~~~~p~s~~~~p~~~~~~~d~lq~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 404 (1216)
.+...+. .+.+..+ ...+++.+.+ ++.+..++......
T Consensus 227 ~~~~~~~------~~~~~~~------~~~~~l~~~s--------------------------~~~~~~s~~~~~~~---- 264 (847)
T KOG0998|consen 227 IPFSQPF------LASMASP------TTLSSLVDLS--------------------------ALNSNPSLSSLSLA---- 264 (847)
T ss_pred ccccccc------ccccccc------cccccccchh--------------------------cccCCccccccccc----
Confidence 3222221 0011110 0111111111 11112222211110
Q ss_pred CCCCCCCCCccccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhC
Q 000940 405 STPAAASTGFPIGALNSTSSQSHVPW-PKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSD 483 (1216)
Q Consensus 405 ~~~~~~sp~~p~g~~~~~~~~~~~~W-p~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~flgs~LpeeeL~qIW~LaD 483 (1216)
...+....| ++|++.++.+|.+||..+|++.+|+|++.+++.+|+.++|++..|++||.++|
T Consensus 265 -----------------~~~q~~~s~~~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d 327 (847)
T KOG0998|consen 265 -----------------SSMQLIVSWSPKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLAD 327 (847)
T ss_pred -----------------cccccccccCcccChHHHHHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhhcc
Confidence 122334445 46899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCHHHHHHHHHHHHHH-hcCCCCCCCCCCCCCCCcccccCCCCCCCC--CCCCCCCCCCCCCCCCCC-----CC
Q 000940 484 QDNDGMLSLKEFCTALYLMERY-REGRPLPTMLPSTIMPDEALFSTTSQPQAP--HVSGTWGPVAGVQQPHAS-----RP 555 (1216)
Q Consensus 484 iD~DGkLdfdEFvvAM~LI~~~-l~G~~LP~~LPp~L~Pp~~~~~~~~~P~~~--~~~~~~~~~~g~~Q~~g~-----~p 555 (1216)
++++|+|+++|||++||++.++ ++|+.||.+||.+|+|+.. +.+..+... ++ ..|....+-.++..+ ..
T Consensus 328 ~~n~~~ls~~ef~~~~~~~~~~~~~g~~lP~vl~~s~~p~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 404 (847)
T KOG0998|consen 328 TQNTGTLSKDEFALAMHLLEQKRAEGRSLPSVLPSSLIPSEN--RKQTNPTTRASTA-ESPSSEQSSLAELKSLALSIAS 404 (847)
T ss_pred hhccCcccccccchhhhhhhhhhhcCCCCcccccccccCccc--cccCCcccccccc-ccCCcccccccccccccccccc
Confidence 9999999999999999999999 8999999999999999842 222222211 11 122222111111111 11
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 556 PT-GKPPRPFPVPQADRSVQTTPQKSKVPELEKHLMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCST 634 (1216)
Q Consensus 556 ~~-~rpp~p~l~pq~d~~~~~~~~ks~~P~ldd~lL~ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrt 634 (1216)
.. .|+.+ .+.+......+.....+.++ +.+++..++....+-.++..+ .+.++.|+.+++..++++...++.
T Consensus 405 ~~~~k~~~----~~~~~~~~~~~~~~~s~~~~--~~~~l~~~~s~~~~l~~~~~~-~~~k~~e~~~~~s~s~~~~~~~~~ 477 (847)
T KOG0998|consen 405 NPREKPRL----EQSSSEAPRTTPVKTSPVLE--LANELSNLASTSQQLPAQKDT-VQDKLNELDAQKSQSKEKFSTTRK 477 (847)
T ss_pred cccccccc----ccccccccccCccccccccc--chhhhhhcchhhhccccccch-hhhhhhhhhhhhhHHHhhhhhhhh
Confidence 11 13311 12222122222222222222 245666666655544332222 568999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000940 635 KMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESG 714 (1216)
Q Consensus 635 QmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~e 714 (1216)
+|+++.++.++|.++|+++..++..+++||+.++.+|+++++|+..|...|...|.+++
T Consensus 478 k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~~~~~ln~~~qq~~~l~~~v~~~~~~ve--------------------- 536 (847)
T KOG0998|consen 478 KKQEEPQWISSLDNDLNLLPLQLSNDNREISSLEKELNELQQQLSVLEGSVKAIESQVE--------------------- 536 (847)
T ss_pred hhhccccccccccchhhhcccccccchhhHHHHHHHHhhhHHHHhHHhhhhhhhhhhhh---------------------
Confidence 99999999999999999999999999999999999998777777665555555554433
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCcccccccccCcccCcccccchhccchhcccccccchhhhhhhcccc
Q 000940 715 DGTLQQHADHIQNELEELVKILNDRCKQYGLRAKPTLLVELPFGWQPGIQEGTADWDEDWDKLEDEGFTFVKELTLEVQN 794 (1216)
Q Consensus 715 da~LQeRlk~iQ~kL~eLEKaL~earkq~GL~aK~~~~vElp~g~~~~~qe~a~~w~edw~~~~d~gf~~~~~~t~~~~~ 794 (1216)
+|.+.|+++|.++....|..+..++.|.|+..++|....|.++|++.+. ...++|...+++
T Consensus 537 ----------------~l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~k~~n~~~~---~s~~~l~~~~e~ 597 (847)
T KOG0998|consen 537 ----------------NLQKELLDLIYEMADTRSKSTLLDDSFKVGMELFEQLLKGSKLVNGKDQ---NSSTELAGYLEG 597 (847)
T ss_pred ----------------hhHhHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhhhhhccccccc---cchhhhhhhccc
Confidence 3444444444444444444444455555555555555555555555422 344444444444
Q ss_pred cCC
Q 000940 795 VVA 797 (1216)
Q Consensus 795 ~~~ 797 (1216)
++.
T Consensus 598 ~~~ 600 (847)
T KOG0998|consen 598 TIN 600 (847)
T ss_pred ccc
Confidence 443
No 2
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-42 Score=397.54 Aligned_cols=293 Identities=28% Similarity=0.418 Sum_probs=176.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHHh
Q 000940 427 HVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYR 506 (1216)
Q Consensus 427 ~~~Wp~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~flgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~l 506 (1216)
...| .+....+.+|+++|+.+|+.+.|||++.++|.+|+.++|+..+|++||.|.|+|+||+|+.+||++|||||+.++
T Consensus 184 ~~eW-AVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liema~ 262 (1118)
T KOG1029|consen 184 LEEW-AVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEMAK 262 (1118)
T ss_pred hhhc-cccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHHHHh
Confidence 4579 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCch
Q 000940 507 EGRPLPTMLPSTIMPDEALFSTTSQPQAPHVSGTWGPVAGVQQPHASRPPTGKPPRP--FPVPQADRSVQTTPQKSKVPE 584 (1216)
Q Consensus 507 ~G~~LP~~LPp~L~Pp~~~~~~~~~P~~~~~~~~~~~~~g~~Q~~g~~p~~~rpp~p--~l~pq~d~~~~~~~~ks~~P~ 584 (1216)
.|.+||.+||+.|+|| .++....+... ++.....-++.+. .|+ .+-|.| +. |. .+.|..|..+ +
T Consensus 263 sGq~lP~tlP~E~Vpp--~~r~~rs~~si--s~~~p~~~~~~~a---ep~-kklP~~~TFE----DK-rkeNy~kGqa-E 328 (1118)
T KOG1029|consen 263 SGQPLPKTLPPELVPP--SFRSSRSANSI--SGLEPGGVGVVDA---EPP-KKLPAPVTFE----DK-RKENYEKGQA-E 328 (1118)
T ss_pred cCCCCCCCCChhhcCc--ccccccCCCCc--cccccCccccccc---Ccc-ccCCCCcchh----hh-hHHhHhhhhH-H
Confidence 9999999999999999 44433322111 1101000111100 111 111111 11 11 2233333332 5
Q ss_pred hhH-------------HHHhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------------------------
Q 000940 585 LEK-------------HLMDQLSKEEQESLNAKLKEATEADKKVEELEKEILT--------------------------- 624 (1216)
Q Consensus 585 ldd-------------~lL~ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~--------------------------- 624 (1216)
||+ .-+.++.++|+++-+++|+|+|. ++-.||++++++
T Consensus 329 LerRRq~leeqqqreree~eqkEreE~ekkererqEqEr--k~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElE 406 (1118)
T KOG1029|consen 329 LERRRQALEEQQQREREEVEQKEREEEEKKERERQEQER--KAQLELEKQLERQREIERQREEERKKEIERREAAREELE 406 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 23566677777777777777773 222233332211
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 625 SREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQ 704 (1216)
Q Consensus 625 lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqa 704 (1216)
-+.+++|.+.+.|||..+++|.+.++- .|..+..+++.++..|+.+|+.|++.|+|++-.+..+.+
T Consensus 407 kqRqlewErar~qem~~Qk~reqe~iv--------------~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt 472 (1118)
T KOG1029|consen 407 KQRQLEWERARRQEMLNQKNREQEWIV--------------YLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKT 472 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHH
Confidence 111222333333333333333322222 233344444455555555555555555655555555555
Q ss_pred HHHHHhcCC-----CCccHHHHHHHHHHHHHHH---HHHHHHHHHhhCcccCcc
Q 000940 705 AILKMEGES-----GDGTLQQHADHIQNELEEL---VKILNDRCKQYGLRAKPT 750 (1216)
Q Consensus 705 ALa~lE~r~-----eda~LQeRlk~iQ~kL~eL---EKaL~earkq~GL~aK~~ 750 (1216)
+|+.+..+. +...||.||++.|++|..| ...|++..||++-..|.+
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~ 526 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKET 526 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCc
Confidence 555444221 3355666666666666665 244555555555444433
No 3
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.2e-19 Score=209.90 Aligned_cols=93 Identities=41% Similarity=0.679 Sum_probs=88.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHH
Q 000940 426 SHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1216)
Q Consensus 426 ~~~~Wp~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~flgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~ 505 (1216)
+..+| .|+.+|+.++.+.|..+ +-+.|||+++++|.||+.++||..+|.+||.|+|.|+||+||..||.+||+||..+
T Consensus 4 ~~n~W-avT~~Er~K~~~qF~~L-kp~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lk 81 (1118)
T KOG1029|consen 4 MTNPW-AVTDEERQKHDAQFGQL-KPGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLK 81 (1118)
T ss_pred CCCcc-ccchHHHHHHHHHHhcc-CCCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHH
Confidence 45689 79999999999999999 57889999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCC
Q 000940 506 REGRPLPTMLPSTIM 520 (1216)
Q Consensus 506 l~G~~LP~~LPp~L~ 520 (1216)
+.|++||.+|||+|+
T Consensus 82 LqG~~lP~~LPPsll 96 (1118)
T KOG1029|consen 82 LQGIQLPPVLPPSLL 96 (1118)
T ss_pred hcCCcCCCCCChHHh
Confidence 999999999999653
No 4
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.82 E-value=1.3e-20 Score=180.99 Aligned_cols=97 Identities=32% Similarity=0.535 Sum_probs=82.4
Q ss_pred CCCcCcccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhcCC
Q 000940 1 MAGQTATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKR 80 (1216)
Q Consensus 1 Ma~ktaee~~~Y~~vF~~lD~DgDGkISg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G~ 80 (1216)
|..=|++|+..|+.+|+.+|+ .+|+|+|.+++.||.+||||.++|++||+|+|.++||+|+++||++|||||..+++|+
T Consensus 1 ~~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~ 79 (104)
T PF12763_consen 1 MPKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGN 79 (104)
T ss_dssp ----SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCC
Confidence 333388999999999999996 6899999999999999999999999999999999999999999999999999988764
Q ss_pred --CCChhhhhhccCCCccCCC
Q 000940 81 --ELTPDIVKAALYGPASARI 99 (1216)
Q Consensus 81 --elspe~Lp~~L~~Ps~~~i 99 (1216)
+| |+.||+.|++|+.+.+
T Consensus 80 ~~~l-P~~LP~~L~p~s~~~~ 99 (104)
T PF12763_consen 80 GKPL-PSSLPPSLIPPSKRPL 99 (104)
T ss_dssp TS----SSSSGGGSSSCG---
T ss_pred CCCC-chhcCHHHCCCCcccc
Confidence 66 9999999999988754
No 5
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.80 E-value=6.3e-20 Score=176.32 Aligned_cols=92 Identities=46% Similarity=0.889 Sum_probs=80.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHHhcC--
Q 000940 431 PKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG-- 508 (1216)
Q Consensus 431 p~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~flgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~l~G-- 508 (1216)
|+|+++|+++|.++|..+|. .+|+|++++++.+|++++|+.++|.+||.++|.|+||+|+++|||+|||||.+.++|
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~ 80 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNG 80 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCC
Confidence 57999999999999999985 689999999999999999999999999999999999999999999999999998755
Q ss_pred CCCCCCCCCCCCCCc
Q 000940 509 RPLPTMLPSTIMPDE 523 (1216)
Q Consensus 509 ~~LP~~LPp~L~Pp~ 523 (1216)
.+||.+||+.|+|++
T Consensus 81 ~~lP~~LP~~L~p~s 95 (104)
T PF12763_consen 81 KPLPSSLPPSLIPPS 95 (104)
T ss_dssp S---SSSSGGGSSSC
T ss_pred CCCchhcCHHHCCCC
Confidence 699999999999993
No 6
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.62 E-value=2.3e-15 Score=141.03 Aligned_cols=93 Identities=37% Similarity=0.752 Sum_probs=90.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHHhcC
Q 000940 429 PWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG 508 (1216)
Q Consensus 429 ~Wp~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~flgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~l~G 508 (1216)
+| .|+.+++.+|+++|..+|+|++|+|+.+|++.+|...+++++++.+||.++|.+++|.|+|+||+.+|+++.+.+.|
T Consensus 1 ~~-~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g 79 (96)
T smart00027 1 DW-AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNG 79 (96)
T ss_pred CC-CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcC
Confidence 58 79999999999999999999999999999999998788999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCC
Q 000940 509 RPLPTMLPSTIMPD 522 (1216)
Q Consensus 509 ~~LP~~LPp~L~Pp 522 (1216)
.+||..||+.|+|+
T Consensus 80 ~~~~~~~~~~~~~~ 93 (96)
T smart00027 80 YPIPASLPPSLIPP 93 (96)
T ss_pred CCCCccCCHhhcCC
Confidence 99999999999997
No 7
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.2e-14 Score=166.18 Aligned_cols=100 Identities=40% Similarity=0.739 Sum_probs=96.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHH
Q 000940 422 TSSQSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYL 501 (1216)
Q Consensus 422 ~~~~~~~~Wp~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~flgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~L 501 (1216)
+++....+| +|++++++.|-+.|+.+-.|-.|+|+|.-+++||.+++|+.++|.+||.|+|.|.||-|++.|||+||||
T Consensus 215 nsS~~d~pw-~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 215 NSSELDTPW-QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred cccccCCcc-ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 355678899 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCCCC
Q 000940 502 MERYREGRPLPTMLPSTIMPD 522 (1216)
Q Consensus 502 I~~~l~G~~LP~~LPp~L~Pp 522 (1216)
|..+++|++||..||..|.|-
T Consensus 294 VVaRkNgypLPe~LP~~L~P~ 314 (737)
T KOG1955|consen 294 VVARKNGYPLPESLPHCLHPN 314 (737)
T ss_pred eeecccCCCCCCCCccccChh
Confidence 999999999999999999986
No 8
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=9.4e-13 Score=163.94 Aligned_cols=100 Identities=32% Similarity=0.638 Sum_probs=92.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHH
Q 000940 423 SSQSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLM 502 (1216)
Q Consensus 423 ~~~~~~~Wp~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~flgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI 502 (1216)
.......| .+++.++.+|..+|..+.+. .|+++++.++.+|+.++|+.+.|.+||.++|+|.+|.|++.||.+||||+
T Consensus 114 ~s~~~~~p-~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~ 191 (847)
T KOG0998|consen 114 TSAAPFVP-AITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLI 191 (847)
T ss_pred CCCcccCC-CCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHH
Confidence 34556779 69999999999999999865 89999999999999999999999999999999999999999999999999
Q ss_pred HHHhcC--CCCCCCCCCCCCCCcc
Q 000940 503 ERYREG--RPLPTMLPSTIMPDEA 524 (1216)
Q Consensus 503 ~~~l~G--~~LP~~LPp~L~Pp~~ 524 (1216)
...+.| .++|..||+.+||+.+
T Consensus 192 ~~~l~~~~~p~P~~~p~~lIpps~ 215 (847)
T KOG0998|consen 192 NDLLNGNSEPVPSRLPPSLIPPSK 215 (847)
T ss_pred HHHhhcccCCCCccCCcccCCcch
Confidence 999994 7999999999999964
No 9
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=4.7e-14 Score=161.42 Aligned_cols=88 Identities=31% Similarity=0.509 Sum_probs=85.2
Q ss_pred CcccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhcCCCCCh
Q 000940 5 TATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKRELTP 84 (1216)
Q Consensus 5 taee~~~Y~~vF~~lD~DgDGkISg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G~elsp 84 (1216)
|.|+++||.+-|+.+.+|-.|.|+|..|+.||.+|.||..+|..||+|+|.|+||-|+..|||.|||||-...+|++| |
T Consensus 226 T~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgypL-P 304 (737)
T KOG1955|consen 226 TPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGYPL-P 304 (737)
T ss_pred CHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCCCC-C
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hhhhhccCC
Q 000940 85 DIVKAALYG 93 (1216)
Q Consensus 85 e~Lp~~L~~ 93 (1216)
+.|+.+|.|
T Consensus 305 e~LP~~L~P 313 (737)
T KOG1955|consen 305 ESLPHCLHP 313 (737)
T ss_pred CCCccccCh
Confidence 999988643
No 10
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.30 E-value=1e-11 Score=116.53 Aligned_cols=90 Identities=29% Similarity=0.523 Sum_probs=84.3
Q ss_pred CcccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhcCCCCCh
Q 000940 5 TATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKRELTP 84 (1216)
Q Consensus 5 taee~~~Y~~vF~~lD~DgDGkISg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G~elsp 84 (1216)
|.++...|.++|..+|.|++|+|+..+++.+|...|++.+.+.+||.++|.+++|+|+++||+.+|+++...+.|++| |
T Consensus 5 s~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~-~ 83 (96)
T smart00027 5 SPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPI-P 83 (96)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCC-C
Confidence 567889999999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred hhhhhccCCCc
Q 000940 85 DIVKAALYGPA 95 (1216)
Q Consensus 85 e~Lp~~L~~Ps 95 (1216)
..||+.|.++.
T Consensus 84 ~~~~~~~~~~~ 94 (96)
T smart00027 84 ASLPPSLIPPS 94 (96)
T ss_pred ccCCHhhcCCC
Confidence 77888876654
No 11
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=4.7e-12 Score=142.77 Aligned_cols=90 Identities=28% Similarity=0.444 Sum_probs=85.8
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhcCCCCChhh
Q 000940 7 TNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKRELTPDI 86 (1216)
Q Consensus 7 ee~~~Y~~vF~~lD~DgDGkISg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G~elspe~ 86 (1216)
.++..|+++|..+-+ -+|+|+|..|+..+.+|.||+.+|.+||.|+|+|+||+|+-+||++|-|||.+...|++| |..
T Consensus 441 ~dk~~yde~fy~l~p-~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli~~kleghel-p~~ 518 (532)
T KOG1954|consen 441 KDKPTYDEIFYTLSP-VNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKLKLEGHEL-PSE 518 (532)
T ss_pred cCCcchHhhhhcccc-cCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHHheecccccC-ccc
Confidence 567889999999987 689999999999999999999999999999999999999999999999999999999999 999
Q ss_pred hhhccCCCccCC
Q 000940 87 VKAALYGPASAR 98 (1216)
Q Consensus 87 Lp~~L~~Ps~~~ 98 (1216)
||++|+||+.+.
T Consensus 519 lp~hl~pps~r~ 530 (532)
T KOG1954|consen 519 LPKHLVPPSKRG 530 (532)
T ss_pred cCcccCCccccc
Confidence 999999998764
No 12
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.8e-10 Score=130.33 Aligned_cols=95 Identities=32% Similarity=0.633 Sum_probs=88.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHH
Q 000940 425 QSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMER 504 (1216)
Q Consensus 425 ~~~~~Wp~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~flgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~ 504 (1216)
.-+..| .++ .++-.|+++|..+- .-+|+|+|..++.-|.+++|+..+|.+||.++|+|+||+|+-+||+.|-|||..
T Consensus 432 ~d~~ew-vv~-~dk~~yde~fy~l~-p~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli~~ 508 (532)
T KOG1954|consen 432 ADEAEW-VVS-KDKPTYDEIFYTLS-PVNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKL 508 (532)
T ss_pred Ccccce-eee-cCCcchHhhhhccc-ccCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHHhe
Confidence 567889 344 46889999999995 578999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCCCCC
Q 000940 505 YREGRPLPTMLPSTIMPD 522 (1216)
Q Consensus 505 ~l~G~~LP~~LPp~L~Pp 522 (1216)
+++|..||..||+.|+||
T Consensus 509 kleghelp~~lp~hl~pp 526 (532)
T KOG1954|consen 509 KLEGHELPSELPKHLVPP 526 (532)
T ss_pred ecccccCccccCcccCCc
Confidence 999999999999999999
No 13
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.97 E-value=1.8e-09 Score=92.88 Aligned_cols=67 Identities=40% Similarity=0.683 Sum_probs=63.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHHhc
Q 000940 441 YTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYRE 507 (1216)
Q Consensus 441 y~eaF~~fDkDgDG~ISgdELr~~flgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~l~ 507 (1216)
|+++|..+|+|++|+|+.+|++.+|...+++++++.+||..+|.+++|.|+|+||+.+|+++.++++
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999877889999999999999999999999999999999988763
No 14
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.95 E-value=2.5e-09 Score=91.96 Aligned_cols=67 Identities=46% Similarity=0.767 Sum_probs=64.7
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhc
Q 000940 12 FEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQS 78 (1216)
Q Consensus 12 Y~~vF~~lD~DgDGkISg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~ 78 (1216)
|+++|..+|+|++|+|+..|++.+|...|++...+.+||..+|.+++|.|+.+||+.+|++|.++|+
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 6889999999999999999999999999999999999999999999999999999999999999874
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.76 E-value=1.5e-08 Score=87.94 Aligned_cols=60 Identities=27% Similarity=0.458 Sum_probs=51.8
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHcCC--C----CHHHHHHHHHHhCCCCCCccCHHHHHHHH
Q 000940 440 KYTKVFVQVDIDRDGKITGEQAYNLFLSWR--L----PREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (1216)
Q Consensus 440 ey~eaF~~fDkDgDG~ISgdELr~~flgs~--L----peeeL~qIW~LaDiD~DGkLdfdEFvvAM 499 (1216)
+|+++|..+|+|++|+|+.+|++.++.... + ..+.+..||..+|.|+||.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 589999999999999999999999995433 3 34566677999999999999999999766
No 16
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.73 E-value=3.4e-08 Score=93.21 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhCC-CCCCcccHHHHHHHHH---cCCCCH-HHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHHhcC
Q 000940 437 EVQKYTKVFVQVDI-DRDGKITGEQAYNLFL---SWRLPR-EVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG 508 (1216)
Q Consensus 437 Ek~ey~eaF~~fDk-DgDG~ISgdELr~~fl---gs~Lpe-eeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~l~G 508 (1216)
-+..|.++|..||+ +++|+|+.+||+.+|. +..++. +++..|+..+|.|+||+|+|+||+.+|--+..+..+
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~~ 82 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVKG 82 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 46789999999999 9999999999999994 455887 999999999999999999999999877766655443
No 17
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.63 E-value=6.4e-08 Score=97.74 Aligned_cols=65 Identities=25% Similarity=0.381 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHH
Q 000940 436 SEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (1216)
Q Consensus 436 eEk~ey~eaF~~fDkDgDG~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~ 500 (1216)
....+++++|+.||+|++|+|+..||+.+| ++.+++.+++..||..+|.|+||+|+|+||+.+|.
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 457789999999999999999999999999 68899999999999999999999999999997664
No 18
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.59 E-value=9.7e-08 Score=99.00 Aligned_cols=63 Identities=25% Similarity=0.393 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHH
Q 000940 437 EVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (1216)
Q Consensus 437 Ek~ey~eaF~~fDkDgDG~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM 499 (1216)
..++|+.+|+.||+|++|+|+..+|+.++ ++.++++++|..|+.++|.|+||+|+|+||+.+|
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 46899999999999999999999999999 7899999999999999999999999999999543
No 19
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.57 E-value=2e-07 Score=94.22 Aligned_cols=71 Identities=24% Similarity=0.377 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHH
Q 000940 433 MTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 503 (1216)
Q Consensus 433 LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~ 503 (1216)
++.++..+|+++|..||+|++|+|+..||..+| ++..+++++|..|+..+|.|++|.|+++||+.+|....
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhh
Confidence 577889999999999999999999999999999 67889999999999999999999999999996554443
No 20
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.54 E-value=1.7e-07 Score=81.44 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=53.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhCCCC------HHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q 000940 11 LFEAYFRRADLDGDGQISGAEAVAFFQGSNLP------KQVLAQVWSHADQRKAGFLNRAEFFNAL 70 (1216)
Q Consensus 11 ~Y~~vF~~lD~DgDGkISg~Ea~~fL~~SgLP------~~~L~qIW~LAD~d~DG~LdrdEF~vAM 70 (1216)
.++++|+.+|.|++|+|+..|++.++...+.. ...+..||..+|.++||+|+++||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 37899999999999999999999999998743 3566777999999999999999999886
No 21
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.54 E-value=4e-07 Score=85.59 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHc-------CCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHH
Q 000940 437 EVQKYTKVFVQVD-IDRDG-KITGEQAYNLFLS-------WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1216)
Q Consensus 437 Ek~ey~eaF~~fD-kDgDG-~ISgdELr~~flg-------s~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~ 505 (1216)
-+..++++|+.|| +|++| +|+.+||+.+|.. ...++++|..||+.+|.|++|+|+|+||+..|.-+..+
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~ 83 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTA 83 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 3678999999998 89999 5999999999954 45788999999999999999999999998766555443
No 22
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.52 E-value=4.2e-07 Score=84.94 Aligned_cols=71 Identities=13% Similarity=0.239 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhC-CCCCCc-ccHHHHHHHHHc-------CCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHHhcC
Q 000940 438 VQKYTKVFVQVD-IDRDGK-ITGEQAYNLFLS-------WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG 508 (1216)
Q Consensus 438 k~ey~eaF~~fD-kDgDG~-ISgdELr~~flg-------s~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~l~G 508 (1216)
+..++++|..|| ++++|+ |+..|++.+|.. ..++.+++.+|+..+|.|++|.|+|+||+.+|..+..+..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~~~ 87 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACNN 87 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 468999999997 999995 999999999942 24588999999999999999999999999887776655433
No 23
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.49 E-value=5.9e-07 Score=84.83 Aligned_cols=69 Identities=12% Similarity=0.214 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHc-------CCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHH
Q 000940 437 EVQKYTKVFVQVD-IDRDG-KITGEQAYNLFLS-------WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1216)
Q Consensus 437 Ek~ey~eaF~~fD-kDgDG-~ISgdELr~~flg-------s~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~ 505 (1216)
-+..+.++|..|| +|++| +|+..||+.+|.. ...+..+|.+|+..+|.|+||.|+|+||+.+|.-+..+
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~ 85 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVA 85 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3578999999998 78998 5999999999933 34578899999999999999999999999876655444
No 24
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.48 E-value=6.3e-07 Score=84.29 Aligned_cols=69 Identities=12% Similarity=0.201 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhCC-CC-CCcccHHHHHHHHH-----cCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHH
Q 000940 437 EVQKYTKVFVQVDI-DR-DGKITGEQAYNLFL-----SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1216)
Q Consensus 437 Ek~ey~eaF~~fDk-Dg-DG~ISgdELr~~fl-----gs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~ 505 (1216)
-+..+-++|.++|. ++ +|+|+.+||+.+|. +.+++.++|.+||+.+|.|++|+|+|+||+..|--+..+
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~ 83 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALI 83 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 35678899999997 77 89999999999993 778999999999999999999999999998766555443
No 25
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.47 E-value=6.9e-07 Score=83.93 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhCC-CC-CCcccHHHHHHHHH-------cCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHH
Q 000940 437 EVQKYTKVFVQVDI-DR-DGKITGEQAYNLFL-------SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1216)
Q Consensus 437 Ek~ey~eaF~~fDk-Dg-DG~ISgdELr~~fl-------gs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~ 505 (1216)
-...|+++|..||. |+ +|+|+.+||+.+|. +..++.+++..|+..+|.+++|.|+|+||+.+|.-+.-.
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 36789999999997 97 69999999999983 457799999999999999999999999999776655443
No 26
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.47 E-value=6.8e-07 Score=82.42 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhCC--CCCCcccHHHHHHHHH---cCCC----CHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHH
Q 000940 435 HSEVQKYTKVFVQVDI--DRDGKITGEQAYNLFL---SWRL----PREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 503 (1216)
Q Consensus 435 ~eEk~ey~eaF~~fDk--DgDG~ISgdELr~~fl---gs~L----peeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~ 503 (1216)
+++++.++++|..+|+ |++|+|+.+|++.+|. +..+ +.+++..||..+|.+++|.|+|+||+.+|.-+.
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 4578899999999999 8999999999999983 3333 489999999999999999999999997655443
No 27
>PTZ00183 centrin; Provisional
Probab=98.37 E-value=1.7e-06 Score=85.54 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHH
Q 000940 431 PKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYL 501 (1216)
Q Consensus 431 p~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~fl--gs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~L 501 (1216)
+.++++++.++..+|..+|.+++|+|+..|++.+|. +..+...++..||..+|.+++|.|+|+||+.+|+.
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 368899999999999999999999999999999994 56688999999999999999999999999976654
No 28
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.34 E-value=2.1e-06 Score=80.96 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHH-hCCCCCC-cccHHHHHHHHHc-------CCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHH
Q 000940 436 SEVQKYTKVFVQ-VDIDRDG-KITGEQAYNLFLS-------WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1216)
Q Consensus 436 eEk~ey~eaF~~-fDkDgDG-~ISgdELr~~flg-------s~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~ 505 (1216)
..+..+..+|.. +|+|++| +|+.+|++.+|.. ......++.+||..+|.|+||.|+|+||+..|--+..+
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~ 84 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVA 84 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 346789999999 7898986 9999999999943 35678999999999999999999999999766655444
No 29
>PTZ00184 calmodulin; Provisional
Probab=98.31 E-value=2.7e-06 Score=82.73 Aligned_cols=71 Identities=23% Similarity=0.385 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHH
Q 000940 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLM 502 (1216)
Q Consensus 432 ~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI 502 (1216)
.++.+++.+++++|..+|.+++|.|+..|++.++ ++..+..+++..||..+|.+++|.|+|+||+.+|..+
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 3678899999999999999999999999999988 4566788899999999999999999999999776643
No 30
>PRK11637 AmiB activator; Provisional
Probab=98.25 E-value=6.3e-05 Score=88.37 Aligned_cols=14 Identities=14% Similarity=0.449 Sum_probs=7.5
Q ss_pred CCCCCCCcccccCC
Q 000940 936 FDTHYDAESVWGFD 949 (1216)
Q Consensus 936 fd~~~d~~s~w~~~ 949 (1216)
-||++..-+||+-+
T Consensus 365 i~hg~g~~t~Y~~~ 378 (428)
T PRK11637 365 VEHGKGDMSLYGYN 378 (428)
T ss_pred EEeCCCcEEEccCC
Confidence 35555555666543
No 31
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.22 E-value=3.9e-06 Score=87.31 Aligned_cols=71 Identities=18% Similarity=0.361 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHH
Q 000940 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 503 (1216)
Q Consensus 432 ~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~ 503 (1216)
.++.+++++++++|..+|+|++|.|+..+|..+| ++.+++..++.+|+...|. +.+.|+|.||+.+|...-
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 5899999999999999999999999999999998 7899999999999999999 999999999997665544
No 32
>PRK09039 hypothetical protein; Validated
Probab=98.20 E-value=4.7e-05 Score=87.65 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 000940 663 EVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE 730 (1216)
Q Consensus 663 EiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~ 730 (1216)
.+..|+.++.+++...++.+.+|+.|..+|..+++|+..|+++|..+|.+. +.++++|.+++.+|+
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~--~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD--RESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 333445555555555555556666666666666666666666666666555 444555555554444
No 33
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.20 E-value=4.8e-06 Score=78.83 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhCC-CCCCcccHHHHHHHHHh-CC--CCH-HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhcC
Q 000940 9 SDLFEAYFRRADL-DGDGQISGAEAVAFFQG-SN--LPK-QVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSK 79 (1216)
Q Consensus 9 ~~~Y~~vF~~lD~-DgDGkISg~Ea~~fL~~-Sg--LP~-~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G 79 (1216)
...+..+|..+|. +++|+|+..|++.+|.. -| |.. ..+.++...+|.|+||.|+++||+..|.-++.+..+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~~ 82 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVKG 82 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4568999999999 99999999999999988 44 777 899999999999999999999999999998888765
No 34
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.17 E-value=5.9e-06 Score=67.43 Aligned_cols=58 Identities=26% Similarity=0.413 Sum_probs=53.4
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHH
Q 000940 441 YTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTA 498 (1216)
Q Consensus 441 y~eaF~~fDkDgDG~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvA 498 (1216)
+..+|..+|.+++|.|+..|+..++ ++...+.+.+..+|..+|.+++|.|+++||+..
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 5788999999999999999999999 466788999999999999999999999999854
No 35
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.15 E-value=6.8e-06 Score=81.39 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHH
Q 000940 434 THSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (1216)
Q Consensus 434 S~eEk~ey~eaF~~fDkDgDG~ISgdELr~~flgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM 499 (1216)
.+..+.++.-+|..+|+|+||+|+.+||..++ ....+..+..++..+|.|+||+|+++||+.++
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 45567889999999999999999999999987 34557888999999999999999999999655
No 36
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.14 E-value=0.00012 Score=82.00 Aligned_cols=117 Identities=14% Similarity=0.243 Sum_probs=83.7
Q ss_pred HhhhcHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHH
Q 000940 590 MDQLSKEEQESLNAKLKEATE-ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLA 668 (1216)
Q Consensus 590 L~ql~~Eee~~ln~~rqEAeE-~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr 668 (1216)
|.+++.+|+..+.+.++++++ |..|+.+++.++......+...+..+.++.+..+.+..+|..+..+...|++.|..|+
T Consensus 171 L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 171 LREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 467778888888777777775 7777777777777767777767777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 669 KKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKM 709 (1216)
Q Consensus 669 ~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~l 709 (1216)
.+|+ .++..++..|..+|.+|++++.++..+...+.+|
T Consensus 251 ~~~~---~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~L 288 (312)
T PF00038_consen 251 QRLD---EEREEYQAEIAELEEELAELREEMARQLREYQEL 288 (312)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 7776 5666666677777777777777777666666653
No 37
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.12 E-value=1.1e-05 Score=75.40 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=63.0
Q ss_pred HHHHHHHHhhC-CCCCC-cccHHHHHHHHHh-C------CCCHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhcC
Q 000940 10 DLFEAYFRRAD-LDGDG-QISGAEAVAFFQG-S------NLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSK 79 (1216)
Q Consensus 10 ~~Y~~vF~~lD-~DgDG-kISg~Ea~~fL~~-S------gLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G 79 (1216)
..++++|..+| .|++| +|+..|++.+|.. - ..+...+.+|+..+|.+++|.|+++||+..|..++.|+.+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~~~ 87 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACNN 87 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 56899999997 99999 5999999999975 2 3478999999999999999999999999999999988765
No 38
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.09 E-value=1.5e-05 Score=75.06 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh-----CC--CCHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhcC
Q 000940 9 SDLFEAYFRRAD-LDGDG-QISGAEAVAFFQG-----SN--LPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSK 79 (1216)
Q Consensus 9 ~~~Y~~vF~~lD-~DgDG-kISg~Ea~~fL~~-----Sg--LP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G 79 (1216)
...+.++|+.+| .|+|| +|+..|++.+|+. .| .+++.+..+++.+|.|++|.|+++||+..|.-++.++.+
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~~~~ 86 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTACHE 86 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHhh
Confidence 456889999998 79999 5999999999998 55 678889999999999999999999999998888887643
No 39
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.07 E-value=6.6e-06 Score=69.34 Aligned_cols=49 Identities=33% Similarity=0.544 Sum_probs=44.7
Q ss_pred CCCcccHHHHHHHH--HcCC-CCHHHHHHHHHHhCCCCCCccCHHHHHHHHH
Q 000940 452 RDGKITGEQAYNLF--LSWR-LPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (1216)
Q Consensus 452 gDG~ISgdELr~~f--lgs~-LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~ 500 (1216)
.+|+|+.++++.+| ++.+ ++.+++..|+..+|.|++|+|+|+||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37999999999999 4677 9999999999999999999999999997654
No 40
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.06 E-value=0.00022 Score=78.54 Aligned_cols=158 Identities=15% Similarity=0.249 Sum_probs=101.3
Q ss_pred HhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HHHhcHHHHHHH
Q 000940 590 MDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITE--RVSGDKREVELL 667 (1216)
Q Consensus 590 L~ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~e--Evs~lKrEiE~L 667 (1216)
+.....+..+.+.+.+.+.+.+.+.+.+++.++..+.+++-.+...++++.....+.+..|..++. +..+|.+|++.+
T Consensus 22 l~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~a 101 (239)
T COG1579 22 LEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIA 101 (239)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 445555666666666667777777777777778887777777777777777777777776655532 334677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHHHHHHH--------HHHH
Q 000940 668 AKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD--GTLQQHADHIQNELEELV--------KILN 737 (1216)
Q Consensus 668 r~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~ed--a~LQeRlk~iQ~kL~eLE--------KaL~ 737 (1216)
+.+...+..++.+|...+..++.++.+++.++..++..+.+++..-+. +.+.+....+..+.++|. +.-.
T Consensus 102 k~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~ye 181 (239)
T COG1579 102 KERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYE 181 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666666667777777777777777777777777777777766533322 333444444445555553 3334
Q ss_pred HHHHhh-Cccc
Q 000940 738 DRCKQY-GLRA 747 (1216)
Q Consensus 738 earkq~-GL~a 747 (1216)
..|+.+ |+.+
T Consensus 182 ri~~~~kg~gv 192 (239)
T COG1579 182 RIRKNKKGVGV 192 (239)
T ss_pred HHHhcCCCceE
Confidence 455544 6644
No 41
>PTZ00184 calmodulin; Provisional
Probab=98.06 E-value=1.5e-05 Score=77.64 Aligned_cols=72 Identities=25% Similarity=0.330 Sum_probs=65.3
Q ss_pred CCCc-CcccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH
Q 000940 1 MAGQ-TATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSN--LPKQVLAQVWSHADQRKAGFLNRAEFFNALKL 72 (1216)
Q Consensus 1 Ma~k-taee~~~Y~~vF~~lD~DgDGkISg~Ea~~fL~~Sg--LP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~L 72 (1216)
||.. |.++...+.++|..+|.+++|.|+..|+..+|...+ +....+..||.++|.+++|.|+++||+.+|..
T Consensus 1 ~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 6777 778889999999999999999999999999998765 67789999999999999999999999988765
No 42
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.05 E-value=1.6e-05 Score=74.96 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=64.1
Q ss_pred CCCcCcccHHHHHHHHHhhCC-CC-CCcccHHHHHHHHHh-----CCCCHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 000940 1 MAGQTATNSDLFEAYFRRADL-DG-DGQISGAEAVAFFQG-----SNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLV 73 (1216)
Q Consensus 1 Ma~ktaee~~~Y~~vF~~lD~-Dg-DGkISg~Ea~~fL~~-----SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LV 73 (1216)
|+....+......++|.++|. |+ +|+|+.+|++.+|.+ -.++.+++.+||+-+|.|++|.|+++||+..|.-+
T Consensus 1 ~~~~~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 1 MASPLDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CCcHHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 444444445677889999998 67 899999999999963 34899999999999999999999999999887777
Q ss_pred HHHh
Q 000940 74 TVAQ 77 (1216)
Q Consensus 74 alAQ 77 (1216)
+.|.
T Consensus 81 ~~~~ 84 (88)
T cd05029 81 ALIY 84 (88)
T ss_pred HHHH
Confidence 6653
No 43
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.03 E-value=9.1e-06 Score=86.70 Aligned_cols=77 Identities=29% Similarity=0.386 Sum_probs=65.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHH--HHHHHHHhCCCCCCccCHHHHHHHHHHHHH
Q 000940 427 HVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREV--LKQVWDLSDQDNDGMLSLKEFCTALYLMER 504 (1216)
Q Consensus 427 ~~~Wp~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~flgs~Lpeee--L~qIW~LaDiD~DGkLdfdEFvvAM~LI~~ 504 (1216)
...| .+..+++.|..+|..+|.+.||||+..||+.+|.+.+.++.. |++|+..+|.|.||+|+|.||+ ||.+
T Consensus 89 eF~e--FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfrefl----LIfr 162 (244)
T KOG0041|consen 89 EFSE--FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFL----LIFR 162 (244)
T ss_pred hhhH--HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHH----HHHH
Confidence 4456 899999999999999999999999999999999777777665 5799999999999999999999 4544
Q ss_pred H-hcCC
Q 000940 505 Y-REGR 509 (1216)
Q Consensus 505 ~-l~G~ 509 (1216)
. ..|.
T Consensus 163 kaaagE 168 (244)
T KOG0041|consen 163 KAAAGE 168 (244)
T ss_pred HHhccc
Confidence 4 4453
No 44
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.01 E-value=2.4e-05 Score=73.64 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhCC-CC-CCcccHHHHHHHHHh-------CCCCHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhc
Q 000940 9 SDLFEAYFRRADL-DG-DGQISGAEAVAFFQG-------SNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQS 78 (1216)
Q Consensus 9 ~~~Y~~vF~~lD~-Dg-DGkISg~Ea~~fL~~-------SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~ 78 (1216)
...+..+|..+|. |+ +|+|+..|++.+|.. .+++...+.+|++.+|.+++|.|+++||+..|.-++++..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~~~ 85 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIACE 85 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 4568899999997 97 699999999999875 2568899999999999999999999999998888777653
No 45
>PTZ00183 centrin; Provisional
Probab=98.01 E-value=1.8e-05 Score=78.23 Aligned_cols=61 Identities=26% Similarity=0.366 Sum_probs=55.8
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHH
Q 000940 439 QKYTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (1216)
Q Consensus 439 ~ey~eaF~~fDkDgDG~ISgdELr~~fl--gs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM 499 (1216)
..++.+|..+|++++|+|+.+|++.++. +..++.+++..|+..+|.+++|.|+|+||+.+|
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 4578999999999999999999999995 567999999999999999999999999998654
No 46
>PRK09039 hypothetical protein; Validated
Probab=98.01 E-value=0.00033 Score=80.77 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQ-------ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVAS 683 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQ-------EL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqs 683 (1216)
++.+|.+++.++...+.+.+.++..++ +++.....++++|.+.+.+.++..++++.|+++++.+..|+..|+.
T Consensus 79 l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~ 158 (343)
T PRK09039 79 LQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA 158 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666665444444443333322 4445555555556666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 684 KLTLEEATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 684 qIA~lEaeLqDiQ~Q~~eLqaALa~ 708 (1216)
.|..+|.+.++++.|+..|+..|..
T Consensus 159 ~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 159 ALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666556666665555555554
No 47
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.99 E-value=0.00033 Score=90.00 Aligned_cols=6 Identities=33% Similarity=0.412 Sum_probs=2.6
Q ss_pred CCCHHH
Q 000940 432 KMTHSE 437 (1216)
Q Consensus 432 ~LS~eE 437 (1216)
.+.+.+
T Consensus 149 ~~~~~~ 154 (1164)
T TIGR02169 149 SMSPVE 154 (1164)
T ss_pred CCCHHH
Confidence 344444
No 48
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=1.6e-05 Score=82.54 Aligned_cols=64 Identities=27% Similarity=0.363 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHH
Q 000940 437 EVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (1216)
Q Consensus 437 Ek~ey~eaF~~fDkDgDG~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~ 500 (1216)
.+.+++.+|+.+|-|++|+|+..+|+.++ ++..|+.++|..|+.++|.|+||.|+-+||...|.
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 46789999999999999999999999999 79999999999999999999999999999996554
No 49
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.98 E-value=0.00041 Score=89.13 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000940 725 IQNELEELVKILNDRCK 741 (1216)
Q Consensus 725 iQ~kL~eLEKaL~eark 741 (1216)
++.++..|++.+.+..+
T Consensus 467 ~~~~l~~~~~~l~~l~~ 483 (1164)
T TIGR02169 467 YEQELYDLKEEYDRVEK 483 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 50
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.98 E-value=0.00053 Score=78.35 Aligned_cols=86 Identities=19% Similarity=0.228 Sum_probs=41.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH-HHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADH-IQNELEELVKILN 737 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~-iQ~kL~eLEKaL~ 737 (1216)
++|.++..+..+++...+++.+|+.+++.++..++.+.+++.+++++|.+++...+. .+. -..+|..|...+.
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~------~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREE------CRGWTRSEVKRLKAKVD 286 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCHHHHHHHHHHHH
Confidence 334444444444444444444444444444445555555555555555443311000 000 1145666677777
Q ss_pred HHHHhhCcccCcc
Q 000940 738 DRCKQYGLRAKPT 750 (1216)
Q Consensus 738 earkq~GL~aK~~ 750 (1216)
..++..|++....
T Consensus 287 ~Le~~~gw~~~~~ 299 (325)
T PF08317_consen 287 ALEKLTGWKIVSI 299 (325)
T ss_pred HHHHHHCcEEEEE
Confidence 7777888766444
No 51
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.97 E-value=0.00052 Score=77.39 Aligned_cols=122 Identities=18% Similarity=0.246 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 609 TEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 688 (1216)
Q Consensus 609 eE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~l 688 (1216)
.+...++.+|.+++..++.+...|+.++++|..+.+.|.++|...-.++-.+|.++..++.++.+..+++.++...+-.+
T Consensus 154 ~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~ 233 (294)
T COG1340 154 LEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNL 233 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999998989999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 000940 689 EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE 730 (1216)
Q Consensus 689 EaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~ 730 (1216)
...|.++...+..|..+..++.-+.....|++|+..|-.++.
T Consensus 234 ~~elre~~k~ik~l~~~~~~~~~~~~~ee~kera~ei~EKfk 275 (294)
T COG1340 234 QNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFK 275 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999888887766666689999999988887
No 52
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.95 E-value=3.2e-05 Score=72.49 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhCCC--CCCcccHHHHHHHHH---cCCCC----HHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHH
Q 000940 437 EVQKYTKVFVQVDID--RDGKITGEQAYNLFL---SWRLP----REVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1216)
Q Consensus 437 Ek~ey~eaF~~fDkD--gDG~ISgdELr~~fl---gs~Lp----eeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~ 505 (1216)
-+..+..+|..++.. .+|+|+.+||+.+|. +..++ ++++..||..+|.|++|.|+|+||+.+|.-+..+
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~ 83 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVA 83 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 467888999999855 479999999999994 34455 8999999999999999999999999776655443
No 53
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.95 E-value=0.00042 Score=88.60 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 648 NRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAI 706 (1216)
Q Consensus 648 deLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaAL 706 (1216)
.++..+..++..++.+++.++.++++..+++.+|..++..++.++..++.++.++++.+
T Consensus 838 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 896 (1179)
T TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333
No 54
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.94 E-value=4.1e-05 Score=72.46 Aligned_cols=70 Identities=21% Similarity=0.269 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh------C-CCCHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhc
Q 000940 9 SDLFEAYFRRAD-LDGDG-QISGAEAVAFFQG------S-NLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQS 78 (1216)
Q Consensus 9 ~~~Y~~vF~~lD-~DgDG-kISg~Ea~~fL~~------S-gLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~ 78 (1216)
...+.++|..+| .|+|| +|+..|++.+|.. . ......+.+|...+|.|+||.|+++||+..|.-++.+..
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~~~ 87 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVACN 87 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 346788899999 78998 5999999999966 2 347789999999999999999999999999988877654
No 55
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.93 E-value=0.00033 Score=88.79 Aligned_cols=32 Identities=6% Similarity=0.013 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 000940 435 HSEVQKYTKVFVQVDIDRDGKITGEQAYNLFL 466 (1216)
Q Consensus 435 ~eEk~ey~eaF~~fDkDgDG~ISgdELr~~fl 466 (1216)
.+|+..+-..|..-=.|.--.+|-+..|.||.
T Consensus 161 k~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~ 192 (1074)
T KOG0250|consen 161 KEDLDTVVDHFNIQVENPMFVLSQDAARSFLA 192 (1074)
T ss_pred HHHHHHHHHHhCcCCCCcchhhcHHHHHHHHh
Confidence 44555555555554334445666666777663
No 56
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.93 E-value=4.1e-05 Score=70.67 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=59.7
Q ss_pred ccHHHHHHHHHhhCC--CCCCcccHHHHHHHHHh-CC--C----CHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHH
Q 000940 7 TNSDLFEAYFRRADL--DGDGQISGAEAVAFFQG-SN--L----PKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTV 75 (1216)
Q Consensus 7 ee~~~Y~~vF~~lD~--DgDGkISg~Ea~~fL~~-Sg--L----P~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LVal 75 (1216)
++...+.++|..+|. |++|+|+..+++.+|.. .| + ....+.+||..+|.+++|.|+++||+..|.-++.
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 456779999999999 89999999999999975 33 3 4899999999999999999999999887765543
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.92 E-value=0.00036 Score=86.90 Aligned_cols=144 Identities=15% Similarity=0.222 Sum_probs=73.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHH---------H
Q 000940 600 SLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAK---------K 670 (1216)
Q Consensus 600 ~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~---------k 670 (1216)
.|.+.++|-++++.|+.+|.+..+.-++-+..+.+++.+.+..+..++.+|.+.+.+. .+.|....+. +
T Consensus 461 eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r--~~ee~~aar~~~~~~~~r~e 538 (697)
T PF09726_consen 461 ELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKAR--KEEEEKAARALAQAQATRQE 538 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHhhhhccccchhccch
Confidence 3444555666666777776666666666666777777777777776666665543221 1111111111 2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC----Cc-------cHHHHHHHHH------HHHH-
Q 000940 671 YEE-KYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGE-SG----DG-------TLQQHADHIQ------NELE- 730 (1216)
Q Consensus 671 YEE-~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r-~e----da-------~LQeRlk~iQ------~kL~- 730 (1216)
+.| ......+|+..|..|+.+|+...+++..|+..++++... .| -+ .||++-.++. .+|+
T Consensus 539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKl 618 (697)
T PF09726_consen 539 CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKL 618 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 222 122334455555555555555555555555555433321 11 12 3344444333 3344
Q ss_pred HHHHHHHHHHHhhCc
Q 000940 731 ELVKILNDRCKQYGL 745 (1216)
Q Consensus 731 eLEKaL~earkq~GL 745 (1216)
+|-.+|-+++.|+-+
T Consensus 619 dLfsaLg~akrq~ei 633 (697)
T PF09726_consen 619 DLFSALGDAKRQLEI 633 (697)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555677777776543
No 58
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.88 E-value=3.6e-05 Score=81.98 Aligned_cols=64 Identities=28% Similarity=0.450 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHH---HcCCCC--HHHH----HHHHHHhCCCCCCccCHHHHHHHHHH
Q 000940 438 VQKYTKVFVQVDIDRDGKITGEQAYNLF---LSWRLP--REVL----KQVWDLSDQDNDGMLSLKEFCTALYL 501 (1216)
Q Consensus 438 k~ey~eaF~~fDkDgDG~ISgdELr~~f---lgs~Lp--eeeL----~qIW~LaDiD~DGkLdfdEFvvAM~L 501 (1216)
+.+++=+|+.+|.+++|+|+.+|++.++ .+.+.. ++.+ ..++.++|.|+||+|+|+||+.++.-
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 3688889999999999999999999988 455565 5554 45678999999999999999966543
No 59
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.86 E-value=0.00057 Score=76.60 Aligned_cols=96 Identities=17% Similarity=0.281 Sum_probs=78.3
Q ss_pred HHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 613 KKVEELEKE----ILTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTL 687 (1216)
Q Consensus 613 kKL~ELeaE----i~~lrqEIE-~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~ 687 (1216)
..|.+++++ +...+++++ ||+.++++|.....+....+.....++..+++.++.|+.+++.+..+...|+.+|..
T Consensus 169 ~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 169 AALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Confidence 445555444 467788888 999999999999999999999999999999999999999999999999999999988
Q ss_pred HHH----HHHHHHHHHHHHHHHHHH
Q 000940 688 EEA----TFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 688 lEa----eLqDiQ~Q~~eLqaALa~ 708 (1216)
+|. ++++.+..+..++..|.+
T Consensus 249 le~~~~~~~~~~~~~i~~le~el~~ 273 (312)
T PF00038_consen 249 LEQRLDEEREEYQAEIAELEEELAE 273 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccchhHHH
Confidence 875 444455556666666655
No 60
>PF14658 EF-hand_9: EF-hand domain
Probab=97.86 E-value=3.3e-05 Score=69.93 Aligned_cols=59 Identities=12% Similarity=0.236 Sum_probs=54.0
Q ss_pred HHHHHhCCCCCCcccHHHHHHHH--HcC-CCCHHHHHHHHHHhCCCCC-CccCHHHHHHHHHH
Q 000940 443 KVFVQVDIDRDGKITGEQAYNLF--LSW-RLPREVLKQVWDLSDQDND-GMLSLKEFCTALYL 501 (1216)
Q Consensus 443 eaF~~fDkDgDG~ISgdELr~~f--lgs-~LpeeeL~qIW~LaDiD~D-GkLdfdEFvvAM~L 501 (1216)
.+|+.||+++.|.|...+|+.+| ++. ..++.+|..+.+++|.++. |.|+|+.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 37999999999999999999999 455 7889999999999999988 99999999988864
No 61
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.85 E-value=7.4e-05 Score=70.68 Aligned_cols=70 Identities=29% Similarity=0.384 Sum_probs=61.7
Q ss_pred HHHHHHHHHh-hCCCCCC-cccHHHHHHHHHhC-------CCCHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhc
Q 000940 9 SDLFEAYFRR-ADLDGDG-QISGAEAVAFFQGS-------NLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQS 78 (1216)
Q Consensus 9 ~~~Y~~vF~~-lD~DgDG-kISg~Ea~~fL~~S-------gLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~ 78 (1216)
......+|.. +|.|++| +|+..|++.+|.+- ...+..+.+||..+|.|+||.|+++||+..|.-++.+..
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~~~ 86 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVACH 86 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 4567889999 8888987 99999999999885 577899999999999999999999999998888877754
No 62
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.85 E-value=0.0015 Score=74.80 Aligned_cols=82 Identities=22% Similarity=0.189 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCccHHHHHHHHHHHHHHHHH
Q 000940 660 DKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEG-----ESGDGTLQQHADHIQNELEELVK 734 (1216)
Q Consensus 660 lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~-----r~eda~LQeRlk~iQ~kL~eLEK 734 (1216)
+|.++..+..+++.+.+++.+++.+++.++..|++..+++.+++.+|.+++. ++... .++..|..
T Consensus 209 lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~----------~Ei~~Lk~ 278 (312)
T smart00787 209 AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTF----------KEIEKLKE 278 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH----------HHHHHHHH
Confidence 3333333444444444444555555555555555555555555555555442 33222 34444444
Q ss_pred HHHHHHHhhCcccCccc
Q 000940 735 ILNDRCKQYGLRAKPTL 751 (1216)
Q Consensus 735 aL~earkq~GL~aK~~~ 751 (1216)
.+.-.=+..|++.....
T Consensus 279 ~~~~Le~l~g~~~~~~~ 295 (312)
T smart00787 279 QLKLLQSLTGWKITKLS 295 (312)
T ss_pred HHHHHHHHhCCeeEecc
Confidence 44444456777664443
No 63
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.83 E-value=0.00092 Score=68.65 Aligned_cols=130 Identities=18% Similarity=0.270 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 605 LKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK 684 (1216)
Q Consensus 605 rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsq 684 (1216)
+.|++.+..++.++++++-.+-++..-...+++.|+..++.++++|+.+.+++...+..++...... ..+..|+++
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~----~~~E~l~rr 81 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK----SNAEQLNRR 81 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HhHHHHHhh
Confidence 3455555555555555555555555555555556666666666666666666666666666543322 222355666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----ccHHHHHHHHHHHHHHHHHHHHH
Q 000940 685 LTLEEATFRDIQEKKMELYQAILKMEGESGD-----GTLQQHADHIQNELEELVKILND 738 (1216)
Q Consensus 685 IA~lEaeLqDiQ~Q~~eLqaALa~lE~r~ed-----a~LQeRlk~iQ~kL~eLEKaL~e 738 (1216)
|+.||.+|..+..++.....-|..+...-+. ..|..+..+...+|++|++.+.+
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 6666665555555555555555443322211 33444444444555555544443
No 64
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=4.3e-05 Score=79.41 Aligned_cols=72 Identities=21% Similarity=0.310 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHHh
Q 000940 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYR 506 (1216)
Q Consensus 432 ~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~l 506 (1216)
.++++++++++.+|..||.+++|+|.++||+.+| +|..+.++++.+|+..+|.++.|+|+|++|. +.|..++
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~---~~mt~k~ 99 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFR---RVMTVKL 99 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHH---HHHHHHH
Confidence 5889999999999999999999999999998888 6899999999999999999999999999999 4555443
No 65
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.82 E-value=0.0012 Score=67.73 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH---hcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS---GDKREVELLAKKYEEKYKQSGDVASKLTL 687 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs---~lKrEiE~Lr~kYEE~~kQIsELqsqIA~ 687 (1216)
+..++.+++.+....-++|..|+.+++.|....-.+...|...+..+. .....++.|..++..+..++.....+|..
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444333333333322 11122223333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Q 000940 688 EEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 732 (1216)
Q Consensus 688 lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eL 732 (1216)
+...|+++..+...++.....|+.+. ..+.+|+..+..+|.++
T Consensus 99 ~~ekl~e~d~~ae~~eRkv~~le~~~--~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 99 TTEKLREADVKAEHFERKVKALEQER--DQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444333 33445555566555554
No 66
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.80 E-value=0.0011 Score=84.19 Aligned_cols=16 Identities=0% Similarity=0.030 Sum_probs=9.8
Q ss_pred CCCCCCCHHHHHHHHHHH
Q 000940 428 VPWPKMTHSEVQKYTKVF 445 (1216)
Q Consensus 428 ~~Wp~LS~eEk~ey~eaF 445 (1216)
+-| |+++.-.+|..-|
T Consensus 179 ~~~--lsQD~aR~FL~~~ 194 (1074)
T KOG0250|consen 179 MFV--LSQDAARSFLANS 194 (1074)
T ss_pred chh--hcHHHHHHHHhcC
Confidence 347 8888766655433
No 67
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.75 E-value=0.00049 Score=85.74 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 631 FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 688 (1216)
Q Consensus 631 ~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~l 688 (1216)
.++..+++|+.++..++++|.++.....+.|..++.||++|.+++++-.+|+.+|+.+
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eE 514 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEE 514 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666666666666666666666666666666666666665555555555444
No 68
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.73 E-value=8.9e-05 Score=73.58 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=54.7
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q 000940 7 TNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNAL 70 (1216)
Q Consensus 7 ee~~~Y~~vF~~lD~DgDGkISg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM 70 (1216)
+.+....-.|..+|.|+||+|+..|+..++ ......-+.++++.+|.|+||+|+++||+..+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 445567778999999999999999999987 45567888999999999999999999999887
No 69
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.72 E-value=0.0039 Score=71.44 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHH---H-HHHHHHHHHHHHHHHHHHHHH
Q 000940 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVEL---L-AKKYEEKYKQSGDVASKLTLE 688 (1216)
Q Consensus 613 kKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~---L-r~kYEE~~kQIsELqsqIA~l 688 (1216)
..+..|+..+..++++.+.+...++.|.-...++..+.+.+..++..+|...++ . +.+++..+.+|.++..+|+..
T Consensus 149 gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~ 228 (325)
T PF08317_consen 149 GLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAK 228 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433333333333333333333322222221 1 333333334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH
Q 000940 689 EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILN 737 (1216)
Q Consensus 689 EaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~ 737 (1216)
+.+|.+++.++.++++.|.+ |.+++.+++.+|.++++.+.
T Consensus 229 k~~l~el~~el~~l~~~i~~---------~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 229 KKELAELQEELEELEEKIEE---------LEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433 34445555555555555554
No 70
>PRK02224 chromosome segregation protein; Provisional
Probab=97.71 E-value=0.0019 Score=81.97 Aligned_cols=43 Identities=9% Similarity=-0.004 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 668 AKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 668 r~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
..++++...++.+|+..+..++....++++++.++.+.|.+++
T Consensus 598 ~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~ 640 (880)
T PRK02224 598 LAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELE 640 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444445555444443
No 71
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.68 E-value=0.0017 Score=74.61 Aligned_cols=72 Identities=18% Similarity=0.137 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 669 KKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 741 (1216)
Q Consensus 669 ~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~eark 741 (1216)
.+|++.+.++.+++..++.++++|..++.++.+++.++..++... ...+++++.+++.+|.+++..+..+..
T Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 196 LELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTF-REEVLEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555566666666666666655555544211 134556677777888877776666555
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.67 E-value=0.0021 Score=85.79 Aligned_cols=129 Identities=16% Similarity=0.116 Sum_probs=71.3
Q ss_pred HHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCC----
Q 000940 642 YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME--GESGD---- 715 (1216)
Q Consensus 642 ~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE--~r~ed---- 715 (1216)
....+..+|++..+++..++.+++.++.++++...++.+|+.+++.++.++..++.++.+++.++..++ ..-|.
T Consensus 356 ~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~ 435 (1486)
T PRK04863 356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDL 435 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 333444444444555555555555566666666666666666676667777777777777777777665 22232
Q ss_pred --ccHHHHHHHHHHHHH--------------HHHHHHHHHHHhhCcccCcccccccccCcccCcccccchhc
Q 000940 716 --GTLQQHADHIQNELE--------------ELVKILNDRCKQYGLRAKPTLLVELPFGWQPGIQEGTADWD 771 (1216)
Q Consensus 716 --a~LQeRlk~iQ~kL~--------------eLEKaL~earkq~GL~aK~~~~vElp~g~~~~~qe~a~~w~ 771 (1216)
..|+..+.++..+++ .+++++...++++++.-+..--|+=+-+|+.+ .|.--.|.
T Consensus 436 SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~-~~~~~~~~ 506 (1486)
T PRK04863 436 TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVA-RELLRRLR 506 (1486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH-HHHHHHhH
Confidence 445554444443333 33455555555666544444457767777632 33333444
No 73
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.67 E-value=0.0029 Score=76.02 Aligned_cols=68 Identities=19% Similarity=0.332 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH
Q 000940 667 LAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKIL 736 (1216)
Q Consensus 667 Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL 736 (1216)
.+.+|+++...+.++++.|...+.+|..++.+...|+..|.+++.+.++ +.++|+++..+|++|...+
T Consensus 328 ~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~--~~~~l~~l~~~l~~~~~~~ 395 (562)
T PHA02562 328 IMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVD--NAEELAKLQDELDKIVKTK 395 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--hHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666777878888888888888888866533 4556666666666664333
No 74
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.65 E-value=0.00018 Score=58.63 Aligned_cols=59 Identities=27% Similarity=0.433 Sum_probs=53.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhC--CCCHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q 000940 12 FEAYFRRADLDGDGQISGAEAVAFFQGS--NLPKQVLAQVWSHADQRKAGFLNRAEFFNAL 70 (1216)
Q Consensus 12 Y~~vF~~lD~DgDGkISg~Ea~~fL~~S--gLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM 70 (1216)
...+|..+|.+++|.|+..++..++... ..+...+..||..+|.+++|.|+.+||+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999886 5888999999999999999999999998654
No 75
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.63 E-value=0.0016 Score=81.07 Aligned_cols=125 Identities=18% Similarity=0.275 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhhHHHHHHHHHHHhcHH-------HHHHHHHHH
Q 000940 607 EATEADKKVEELEKEILTSREKIQFC--------STKMQELILYKSRCDNRLNEITERVSGDKR-------EVELLAKKY 671 (1216)
Q Consensus 607 EAeE~dkKL~ELeaEi~~lrqEIE~l--------rtQmQEL~m~kqR~edeLnei~eEvs~lKr-------EiE~Lr~kY 671 (1216)
|.+.++.++.||+.++.=|+.|++.- .-++.+|..++.|+.+-|-.+..-.+..|. |+|.++.++
T Consensus 333 eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~ 412 (1243)
T KOG0971|consen 333 EVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSEL 412 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHH
Confidence 55555566666666665555555421 115667888888877765554433334444 444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCCccHHHHHHHHHHHHHHHH
Q 000940 672 EEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL---KMEGESGDGTLQQHADHIQNELEELV 733 (1216)
Q Consensus 672 EE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa---~lE~r~eda~LQeRlk~iQ~kL~eLE 733 (1216)
+++..+..-|.++|..+|..|.++|+|+..---|.+ .|-+++ -+|.+|++.+...+.+||
T Consensus 413 ~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdkn--lnlEekVklLeetv~dlE 475 (1243)
T KOG0971|consen 413 EELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKN--LNLEEKVKLLEETVGDLE 475 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhc--cCHHHHHHHHHHHHHHHH
Confidence 444455555556667778888888887764433333 222444 667788888776666664
No 76
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.61 E-value=0.0026 Score=70.33 Aligned_cols=99 Identities=13% Similarity=0.200 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 000940 610 EADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELL--AKKYEEKYKQSGDVASKLTL 687 (1216)
Q Consensus 610 E~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~L--r~kYEE~~kQIsELqsqIA~ 687 (1216)
+..+-|..+++++..+++.++.++..+.+|..++.+.+.+|+++.+++...+..+-.. ..+|..+..++..+++++..
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINS 107 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667777777777777777888888888888888888877777554444332 44455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000940 688 EEATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 688 lEaeLqDiQ~Q~~eLqaALa~ 708 (1216)
+|.+|.++.+++..|+..+..
T Consensus 108 le~el~~l~~~~~~l~~~i~~ 128 (239)
T COG1579 108 LEDELAELMEEIEKLEKEIED 128 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544
No 77
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.61 E-value=0.0037 Score=75.21 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=34.6
Q ss_pred HhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 643 KSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKM 709 (1216)
Q Consensus 643 kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~l 709 (1216)
...++++++++..++..++.+++.|+.++.++..++.++...|..++.++.+++.++..++..+.-+
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444554555555555555555555554544444555555555555555555555555544
No 78
>PRK03918 chromosome segregation protein; Provisional
Probab=97.59 E-value=0.0031 Score=79.86 Aligned_cols=16 Identities=13% Similarity=0.246 Sum_probs=9.9
Q ss_pred chhccchhcccccccc
Q 000940 768 ADWDEDWDKLEDEGFT 783 (1216)
Q Consensus 768 ~~w~edw~~~~d~gf~ 783 (1216)
..+++-|++|.+.+|.
T Consensus 747 ~~~~~if~~l~~~~~~ 762 (880)
T PRK03918 747 EIASEIFEELTEGKYS 762 (880)
T ss_pred HHHHHHHHHHcCCCee
Confidence 3446667777665555
No 79
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.59 E-value=0.00013 Score=61.53 Aligned_cols=49 Identities=18% Similarity=0.376 Sum_probs=44.8
Q ss_pred CCCcccHHHHHHHHHhC--C-CCHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Q 000940 23 GDGQISGAEAVAFFQGS--N-LPKQVLAQVWSHADQRKAGFLNRAEFFNALK 71 (1216)
Q Consensus 23 gDGkISg~Ea~~fL~~S--g-LP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~ 71 (1216)
.+|+|+.++++.+|... + ++.+++..|+..+|.+++|+|+++||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37999999999999654 4 8899999999999999999999999999885
No 80
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.56 E-value=0.0054 Score=74.38 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=9.6
Q ss_pred CccHHHHHHHHHHHHH
Q 000940 715 DGTLQQHADHIQNELE 730 (1216)
Q Consensus 715 da~LQeRlk~iQ~kL~ 730 (1216)
+..|++.|+.++.+|.
T Consensus 285 ~e~LkeqLr~~qe~lq 300 (546)
T PF07888_consen 285 NEALKEQLRSAQEQLQ 300 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556666666665554
No 81
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.52 E-value=0.0038 Score=75.64 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=43.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHhcHHHHHHHHH
Q 000940 597 EQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRC-------DNRLNEITERVSGDKREVELLAK 669 (1216)
Q Consensus 597 ee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~-------edeLnei~eEvs~lKrEiE~Lr~ 669 (1216)
|+..+...++.+++..+.+.+++.+|..++++++-|+.++.+.......+ ...|.++.+++.-+|+.+..|+.
T Consensus 90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 90 YEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 33334444444445556666677777777777776666554332222111 22233334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000940 670 KYEEKYKQSGDVASKLTLE 688 (1216)
Q Consensus 670 kYEE~~kQIsELqsqIA~l 688 (1216)
+...+++++..|...|+.+
T Consensus 170 e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELARA 188 (546)
T ss_pred HHHHHHHHhhhhHHHHHHH
Confidence 4444444444444444333
No 82
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.51 E-value=0.0059 Score=76.74 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=88.6
Q ss_pred hhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHH
Q 000940 591 DQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKK 670 (1216)
Q Consensus 591 ~ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~k 670 (1216)
..++.+|-....+ ..+++++++.-|+.+++...++|+.++.++..|+....++.++++++.++-+.+.+-++.+.+.
T Consensus 546 ~vlreeYi~~~~~---ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 546 KVLREEYIEKQDL---AREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455444433 2334556776666666666666666666555555555555555555554444444444433221
Q ss_pred H----------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------ccHHHHHHHHHHHHH
Q 000940 671 Y----------E-EKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD---------GTLQQHADHIQNELE 730 (1216)
Q Consensus 671 Y----------E-E~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~ed---------a~LQeRlk~iQ~kL~ 730 (1216)
. | +..+++..++.+|..+.+.|++++.+++.++..++.-+..... ..+++-|++--.+|+
T Consensus 623 l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~ 702 (717)
T PF10168_consen 623 LNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEID 702 (717)
T ss_pred HhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1236777777888888889999999888877766643322211 334445555557777
Q ss_pred HHHHHHHHHHHhhCc
Q 000940 731 ELVKILNDRCKQYGL 745 (1216)
Q Consensus 731 eLEKaL~earkq~GL 745 (1216)
+|.|.++...++.|+
T Consensus 703 ~~v~~ik~i~~~~~~ 717 (717)
T PF10168_consen 703 ELVKQIKNIKKIVNF 717 (717)
T ss_pred HHHHHHHHHHHhhCC
Confidence 888888877777653
No 83
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=97.51 E-value=0.0003 Score=76.34 Aligned_cols=65 Identities=20% Similarity=0.399 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHH
Q 000940 438 VQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLM 502 (1216)
Q Consensus 438 k~ey~eaF~~fDkDgDG~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI 502 (1216)
++..+++|+.+|+|++|.|+..||+.+| +|..|+.+.+..|++.+|...+|.|.|++|+.++-.+
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 5677889999999999999999999999 7899999999999999998889999999998764433
No 84
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.49 E-value=0.0035 Score=71.39 Aligned_cols=126 Identities=17% Similarity=0.264 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 612 DKKVEELEKEILTSREKIQFC-------STKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK 684 (1216)
Q Consensus 612 dkKL~ELeaEi~~lrqEIE~l-------rtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsq 684 (1216)
++|+..|+.+-..+|.++..+ ..+-|.|.+. |-.+|.+...+|+.+..|+..-..++...+.+|..|.++
T Consensus 166 q~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~d---cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 166 QEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLD---CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHH---HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544444444444 4455555443 666788888888888888888877888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 685 LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQ 742 (1216)
Q Consensus 685 IA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~earkq 742 (1216)
|..++..++.+=.+..+|++.|....+-. ..|+..+++++.++.|....|.|+...
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~ske~Q--~~L~aEL~elqdkY~E~~~mL~EaQEE 298 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQASKESQ--RQLQAELQELQDKYAECMAMLHEAQEE 298 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998866333 468888999998888888888877763
No 85
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.49 E-value=0.0052 Score=80.88 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 000940 719 QQHADHIQNELEEL 732 (1216)
Q Consensus 719 QeRlk~iQ~kL~eL 732 (1216)
..+|+.+..++.++
T Consensus 890 ~~~l~~~~~~~~~~ 903 (1163)
T COG1196 890 EEELRELESELAEL 903 (1163)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344333333333
No 86
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.49 E-value=0.0046 Score=82.74 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=29.9
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 733 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLE 733 (1216)
.+...++.|+.++++....+.+++.++..++.++..+++++.+|+..+.+++..- ..++.++.+++..+..|+
T Consensus 352 ~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel--~elQ~el~q~qq~i~~Le 424 (1486)
T PRK04863 352 RYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAL--DVQQTRAIQYQQAVQALE 424 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444433322111 233444444444444443
No 87
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.48 E-value=0.00038 Score=72.19 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=66.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHHhc
Q 000940 430 WPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYRE 507 (1216)
Q Consensus 430 Wp~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~l~ 507 (1216)
+..+++.++++|+++|..+|.|+||+|..++|+.+| +|...++++|..|+.++ .|-|+|--|+ .|+..++.
T Consensus 23 Famf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FL---TmfGekL~ 95 (171)
T KOG0031|consen 23 FAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFL---TMFGEKLN 95 (171)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHH---HHHHHHhc
Confidence 445789999999999999999999999999999999 78889999999999886 4789999998 68888888
Q ss_pred CCC
Q 000940 508 GRP 510 (1216)
Q Consensus 508 G~~ 510 (1216)
|..
T Consensus 96 gtd 98 (171)
T KOG0031|consen 96 GTD 98 (171)
T ss_pred CCC
Confidence 874
No 88
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.46 E-value=0.0053 Score=67.44 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000940 692 FRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQY 743 (1216)
Q Consensus 692 LqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~earkq~ 743 (1216)
...+..++..|.+.|..++.|.+.+ ..++..++.+|+.|+..|.....+|
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~a--E~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFA--ERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666443 4566666677777766665544433
No 89
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.45 E-value=0.0061 Score=80.21 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q 000940 512 PTMLPSTIM 520 (1216)
Q Consensus 512 P~~LPp~L~ 520 (1216)
...||..-+
T Consensus 569 ~tflpl~~i 577 (1163)
T COG1196 569 ATFLPLDRI 577 (1163)
T ss_pred cccCchhhh
Confidence 334444433
No 90
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.45 E-value=0.01 Score=73.49 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 000940 691 TFRDIQEKKMELYQAILKMEGE 712 (1216)
Q Consensus 691 eLqDiQ~Q~~eLqaALa~lE~r 712 (1216)
+=+++|+|+.+|+.+..+|-+.
T Consensus 161 QN~eLK~QL~Elq~~Fv~ltne 182 (617)
T PF15070_consen 161 QNRELKEQLAELQDAFVKLTNE 182 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556666666666655533
No 91
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.44 E-value=0.0071 Score=62.27 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEa 690 (1216)
+..+|..|++++..++...+.+......-...+.++..+|..++.++..++.++..|+.+-+.+.+++...+.+|..||.
T Consensus 22 le~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 22 LEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444444444433333444444555555555555566666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000940 691 TFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 691 eLqDiQ~Q~~eLqaALa~ 708 (1216)
...++.+.+..+++...+
T Consensus 102 ~~~~~~~~l~~~E~ek~q 119 (140)
T PF10473_consen 102 LNSSLENLLQEKEQEKVQ 119 (140)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 666666666666666444
No 92
>PRK02224 chromosome segregation protein; Provisional
Probab=97.43 E-value=0.0071 Score=76.87 Aligned_cols=12 Identities=0% Similarity=-0.017 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 000940 676 KQSGDVASKLTL 687 (1216)
Q Consensus 676 kQIsELqsqIA~ 687 (1216)
.++.+++.+|..
T Consensus 627 ~~l~~~r~~i~~ 638 (880)
T PRK02224 627 ERLAEKRERKRE 638 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 93
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.42 E-value=0.01 Score=68.38 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCccHHHHHHHHHHHHHHHHHHHH
Q 000940 660 DKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKM-EGESGDGTLQQHADHIQNELEELVKILN 737 (1216)
Q Consensus 660 lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~l-E~r~eda~LQeRlk~iQ~kL~eLEKaL~ 737 (1216)
.++++...+.+|.+.+.++.+++.+|+.++.+++.++.++..+....... +.. -..+++++.+++.+|+.++..+.
T Consensus 194 s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~--l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 194 SRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEE--LTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555666667777777777777777777777777766666554443321 111 24456777778877777665553
No 94
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.42 E-value=0.0004 Score=72.09 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHH
Q 000940 438 VQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTA 498 (1216)
Q Consensus 438 k~ey~eaF~~fDkDgDG~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvA 498 (1216)
.+-+..+|..||.+++|+|..+.|+++| ++-+++.++|.+||+.+=+|..|.|+|.+||.+
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ 162 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYI 162 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHH
Confidence 4678999999999999999999999999 688999999999999999999999999999943
No 95
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=97.42 E-value=0.0063 Score=67.10 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 615 VEELEKEILTSREKIQFCSTKMQE 638 (1216)
Q Consensus 615 L~ELeaEi~~lrqEIE~lrtQmQE 638 (1216)
+.+++.++.+++++.+.++.++++
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 96
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=97.42 E-value=0.0083 Score=66.66 Aligned_cols=135 Identities=12% Similarity=0.205 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHH-----HHHHHHHHHHHHHHHHHHH
Q 000940 607 EATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKR-----EVELLAKKYEEKYKQSGDV 681 (1216)
Q Consensus 607 EAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKr-----EiE~Lr~kYEE~~kQIsEL 681 (1216)
+++.+.+|+..+....+.+....+....+.++|..++......+.++.+++..+.. .-+.|...+++.+..+.++
T Consensus 60 d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~em 139 (264)
T PF06008_consen 60 DVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEM 139 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 34444445544444555555555555556667777777777777777776665544 2223444444444444444
Q ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 682 A-----SKLTLEEATFRDIQEKKMELYQAILKMEGESGD--GTLQQHADHIQNELEELVKILNDRCK 741 (1216)
Q Consensus 682 q-----sqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~ed--a~LQeRlk~iQ~kL~eLEKaL~eark 741 (1216)
+ .+.+..|.++..++.=+..+++.+.+-.+..+. ..++++|.+++.+|.+|..+|+++..
T Consensus 140 r~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~ 206 (264)
T PF06008_consen 140 RKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQN 206 (264)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 224455667777777777777776653322211 44677888999999999888887654
No 97
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.41 E-value=0.0078 Score=71.08 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=42.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHH
Q 000940 600 SLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKK 670 (1216)
Q Consensus 600 ~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~k 670 (1216)
.+++-.+|+++.+++|.+.+.+...+..+|..+++.+..|.....+..++|+.+..+|+.+...++.|+.+
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444455555556666666666666666666666666666666666666666666666666666665333
No 98
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.38 E-value=0.013 Score=77.50 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=25.6
Q ss_pred HHHHHHHHHH-HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Q 000940 698 KKMELYQAIL-KMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGLRA 747 (1216)
Q Consensus 698 Q~~eLqaALa-~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~earkq~GL~a 747 (1216)
++.+|++++. +|.+++.|. ++|.++..+|++|++.|..+.+.-.++.
T Consensus 751 ~~~~le~~~~~eL~~~GvD~---~~I~~l~~~i~~L~~~l~~ie~~r~~V~ 798 (1201)
T PF12128_consen 751 QLKELEQQYNQELAGKGVDP---ERIQQLKQEIEQLEKELKRIEERRAEVI 798 (1201)
T ss_pred HHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3334444443 455677664 3466666666666666666555444443
No 99
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=97.37 E-value=0.00096 Score=76.26 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 614 KVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFR 693 (1216)
Q Consensus 614 KL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLq 693 (1216)
-+.+++.++.....|.+.|..=+.+|+.. .....++..+.+++..++.|.++|.++++++.++..+|.+.|..+|.++.
T Consensus 10 l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~-~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 10 LLEQLDKQLEQAEKERDTYQEFLKKLEEE-SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp ---------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666555444411 11122234444444444444444444444444444444444444444444
Q ss_pred HHH
Q 000940 694 DIQ 696 (1216)
Q Consensus 694 DiQ 696 (1216)
+++
T Consensus 89 ~l~ 91 (314)
T PF04111_consen 89 ELD 91 (314)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 100
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.36 E-value=0.0047 Score=74.89 Aligned_cols=29 Identities=34% Similarity=0.383 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 606 KEATEADKKVEELEKEILTSREKIQFCST 634 (1216)
Q Consensus 606 qEAeE~dkKL~ELeaEi~~lrqEIE~lrt 634 (1216)
+|.+++.+....|+.++..++.+++.++.
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~ 178 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEA 178 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444334444444444444444443333
No 101
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=97.36 E-value=0.01 Score=69.72 Aligned_cols=56 Identities=9% Similarity=0.117 Sum_probs=35.3
Q ss_pred CCCchhhHHHHhhhcHHHHHHHHHhHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 580 SKVPELEKHLMDQLSKEEQESLNAKLKE-A----TEADKKVEELEKEILTSREKIQFCSTK 635 (1216)
Q Consensus 580 s~~P~ldd~lL~ql~~Eee~~ln~~rqE-A----eE~dkKL~ELeaEi~~lrqEIE~lrtQ 635 (1216)
+.-|.+-..+++.+-..|.+.....+.+ + +.++.++.+++.++....++++.|+.+
T Consensus 140 ~~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 140 GVDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777766666533222222 2 237788888888888888887776663
No 102
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.35 E-value=0.00037 Score=81.34 Aligned_cols=68 Identities=22% Similarity=0.404 Sum_probs=61.5
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHH------HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHHh
Q 000940 439 QKYTKVFVQVDIDRDGKITGEQAYNLF------LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYR 506 (1216)
Q Consensus 439 ~ey~eaF~~fDkDgDG~ISgdELr~~f------lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~l 506 (1216)
..+..+|+.+|+|++|.|+.+|++.++ +.-.++++++.++-+..|.|+||+|++.||+.|.+|+++.+
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~~ 620 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRRR 620 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcchh
Confidence 357789999999999999999999887 34578899999999999999999999999999999999854
No 103
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.35 E-value=0.00039 Score=71.13 Aligned_cols=74 Identities=20% Similarity=0.342 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCC--CCCccCHHHHHHHHHHHHHHh
Q 000940 433 MTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQD--NDGMLSLKEFCTALYLMERYR 506 (1216)
Q Consensus 433 LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD--~DGkLdfdEFvvAM~LI~~~l 506 (1216)
.+++++.++++||..||+.+||+|++.++..+| +|.+.++.+|.+.....+.+ +--.|+|++|+-++.-+.+.+
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 467788999999999999999999999999999 79999999999998888877 557899999996555555443
No 104
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.0084 Score=67.23 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 000940 691 TFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 691 eLqDiQ~Q~~eLqaALa~lE 710 (1216)
-|.+.+.++..|+..-..++
T Consensus 149 ile~qk~dk~~Le~kq~~l~ 168 (265)
T COG3883 149 ILEQQKEDKKSLEEKQAALE 168 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 105
>PLN02964 phosphatidylserine decarboxylase
Probab=97.34 E-value=0.00044 Score=85.31 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=60.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--Hc-CCCCHHH---HHHHHHHhCCCCCCccCHHHHHHHH
Q 000940 426 SHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LS-WRLPREV---LKQVWDLSDQDNDGMLSLKEFCTAL 499 (1216)
Q Consensus 426 ~~~~Wp~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~f--lg-s~Lpeee---L~qIW~LaDiD~DGkLdfdEFvvAM 499 (1216)
+..+|-.++..|+++++++|+.+|+|++|+| +..+| ++ ...++++ +..|+.++|.|++|.|+|+||+.+|
T Consensus 130 ~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL 205 (644)
T PLN02964 130 CELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLI 205 (644)
T ss_pred eeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 4667877889999999999999999999998 67777 45 3566666 8999999999999999999999766
Q ss_pred H
Q 000940 500 Y 500 (1216)
Q Consensus 500 ~ 500 (1216)
.
T Consensus 206 ~ 206 (644)
T PLN02964 206 K 206 (644)
T ss_pred H
Confidence 5
No 106
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.31 E-value=0.0086 Score=81.10 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCCCCCCccCHHHHHH
Q 000940 473 EVLKQVWDLSDQDNDGMLSLKEFCT 497 (1216)
Q Consensus 473 eeL~qIW~LaDiD~DGkLdfdEFvv 497 (1216)
+.|..|+..+-.--.|+|...+|..
T Consensus 770 ~~ls~ii~~fQA~~Rg~l~r~~~~k 794 (1930)
T KOG0161|consen 770 EKLSQIITLFQAAIRGYLARKEFKK 794 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666566677888888853
No 107
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.30 E-value=0.011 Score=73.99 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000940 623 LTSREKIQFCSTKMQELILYKSRCDN 648 (1216)
Q Consensus 623 ~~lrqEIE~lrtQmQEL~m~kqR~ed 648 (1216)
++.++|.+.++.++.+|......|+.
T Consensus 382 qe~~~e~eqLr~elaql~a~r~q~ek 407 (980)
T KOG0980|consen 382 QENREEQEQLRNELAQLLASRTQLEK 407 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666655555555544443
No 108
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=97.29 E-value=0.013 Score=70.05 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=30.2
Q ss_pred CCchhhHHHHhhhcHHHHHHHHH-hHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 581 KVPELEKHLMDQLSKEEQESLNA-KLKEAT----EADKKVEELEKEILTSREKIQFCST 634 (1216)
Q Consensus 581 ~~P~ldd~lL~ql~~Eee~~ln~-~rqEAe----E~dkKL~ELeaEi~~lrqEIE~lrt 634 (1216)
.-|++-..+++.+-..|.+.... ++++++ .+++++.+++.++....+++..|+.
T Consensus 131 ~dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 131 KDPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665555543221 112222 2667777777777777777776654
No 109
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.28 E-value=0.04 Score=59.68 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=36.3
Q ss_pred hhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHH
Q 000940 591 DQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVE 665 (1216)
Q Consensus 591 ~ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE 665 (1216)
.++++-|-++...++.- |..|..+|..++.+.+..++.|+++...+.|+-.-|.....++..|++++.
T Consensus 12 ~~iK~YYndIT~~NL~l-------IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 12 QEIKNYYNDITLNNLEL-------IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45555555544443333 334555555555555556666666666666655555555555554444444
No 110
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.28 E-value=0.0036 Score=78.48 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=56.4
Q ss_pred CCCCCchhhHHHHhhhcHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHH
Q 000940 578 QKSKVPELEKHLMDQLSKEEQESLNAKLKE-----ATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSR-CDNRLN 651 (1216)
Q Consensus 578 ~ks~~P~ldd~lL~ql~~Eee~~ln~~rqE-----AeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR-~edeLn 651 (1216)
..+.-|++-..++|.+-..|.+.-...+.+ .+.+++++.+++.++.....+++.|+.+-..+...... ...+|.
T Consensus 161 ~~~~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~ 240 (754)
T TIGR01005 161 FRSEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLA 240 (754)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHH
Confidence 455667888888888887776543222222 23377888888888877777777776643222111111 113455
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHH
Q 000940 652 EITERVSGDKREVELLAKKYEEKYKQ 677 (1216)
Q Consensus 652 ei~eEvs~lKrEiE~Lr~kYEE~~kQ 677 (1216)
++..++...+.++...+.+|+.++.+
T Consensus 241 ~l~~ql~~a~~~~~~a~a~~~~l~~~ 266 (754)
T TIGR01005 241 ELNTELSRARANRAAAEGTADSVKKA 266 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555544433
No 111
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.28 E-value=0.0006 Score=73.27 Aligned_cols=69 Identities=22% Similarity=0.254 Sum_probs=62.0
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHH--HHHHHHhhcCCCCCCCCHHHHHHHHHHHHH
Q 000940 7 TNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQV--LAQVWSHADQRKAGFLNRAEFFNALKLVTV 75 (1216)
Q Consensus 7 ee~~~Y~~vF~~lD~DgDGkISg~Ea~~fL~~SgLP~~~--L~qIW~LAD~d~DG~LdrdEF~vAM~LVal 75 (1216)
.+...|..+|.++|.|.||+|+..|++.+|.+-|.|+.- |+++...+|-|.||+|++.||++..++++-
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 456778999999999999999999999999999999865 578999999999999999999998877643
No 112
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.26 E-value=0.0096 Score=79.31 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=7.9
Q ss_pred Ccc-CCCCCCCCccc
Q 000940 932 SWG-TFDTHYDAESV 945 (1216)
Q Consensus 932 ~wg-~fd~~~d~~s~ 945 (1216)
-|. +|. +.|.|-|
T Consensus 1149 ~w~~~~~-~~~~~~i 1162 (1311)
T TIGR00606 1149 LWRSTYR-GQDIEYI 1162 (1311)
T ss_pred HHHHHcC-ccHHHHh
Confidence 476 666 5566655
No 113
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.26 E-value=0.0098 Score=74.46 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 619 EKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (1216)
Q Consensus 619 eaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEa 690 (1216)
.+++...|.+.+.-+..++++..+..-.+++.+.+++..+.++.+=..|-.||.+.+||+..-+..|-.++.
T Consensus 395 laql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~ 466 (980)
T KOG0980|consen 395 LAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEE 466 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333333333333333335566666666677777777777777777777777777777766555444433333
No 114
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=97.23 E-value=0.012 Score=62.04 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKY 671 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kY 671 (1216)
.++++.+++.|+..+++++..+...+..+......+...++...+++..++..++.+.+++
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~ 146 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEI 146 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554444444444333333333333333333333333333
No 115
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.23 E-value=0.0077 Score=77.18 Aligned_cols=118 Identities=23% Similarity=0.301 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 624 TSREKIQFCSTKMQELILYKSRCDNRLNEITERV----SGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKK 699 (1216)
Q Consensus 624 ~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEv----s~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~ 699 (1216)
+++.+++..++++..|.....+|+.+|+++...+ ...+.|++.++.++....+++.++..+++..|.+|..+...+
T Consensus 437 ~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~ 516 (1293)
T KOG0996|consen 437 KARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRH 516 (1293)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444555554555444333 366667777777777777788888877777777766665554
Q ss_pred HHHHH-------HHHHHh-----cCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 700 MELYQ-------AILKME-----GESGDGTLQQHADHIQNELEELVKILNDRCK 741 (1216)
Q Consensus 700 ~eLqa-------ALa~lE-----~r~eda~LQeRlk~iQ~kL~eLEKaL~eark 741 (1216)
+.+.. .|.++. ...+-..|++.|.+...++.+++|.|...++
T Consensus 517 ~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~ 570 (1293)
T KOG0996|consen 517 ETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRK 570 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHH
Confidence 44443 333322 1222234455555555555555444444443
No 116
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.23 E-value=0.013 Score=79.59 Aligned_cols=18 Identities=0% Similarity=0.028 Sum_probs=12.5
Q ss_pred HHhCCCCHHHHHHHHHhh
Q 000940 36 FQGSNLPKQVLAQVWSHA 53 (1216)
Q Consensus 36 L~~SgLP~~~L~qIW~LA 53 (1216)
|...|++.+...-||.++
T Consensus 329 ~~ilgfs~~E~~~~~~i~ 346 (1930)
T KOG0161|consen 329 MDILGFSEEEKISIFRIV 346 (1930)
T ss_pred HHHhCCCHHHHHHHHHHH
Confidence 444688888877777654
No 117
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=97.21 E-value=0.0085 Score=60.52 Aligned_cols=11 Identities=27% Similarity=0.462 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 000940 665 ELLAKKYEEKY 675 (1216)
Q Consensus 665 E~Lr~kYEE~~ 675 (1216)
...+.+|+.+.
T Consensus 41 ~~Aq~~YE~El 51 (132)
T PF07926_consen 41 QEAQQKYEREL 51 (132)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 118
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.21 E-value=0.00065 Score=69.55 Aligned_cols=59 Identities=17% Similarity=0.386 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHH
Q 000940 438 VQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCT 497 (1216)
Q Consensus 438 k~ey~eaF~~fDkDgDG~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvv 497 (1216)
.+.|-+-.+.||++++|+|.+.|||.+| +|.+|+++++.+++.-.. |.+|.|+|+.|+.
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk 147 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVK 147 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHH
Confidence 4678888999999999999999999999 799999999999987654 7889999999995
No 119
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.21 E-value=0.011 Score=78.80 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 000940 668 AKKYEEKYKQSGDV 681 (1216)
Q Consensus 668 r~kYEE~~kQIsEL 681 (1216)
+.+++....+|.+|
T Consensus 849 ~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 849 RKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333444444
No 120
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.18 E-value=0.017 Score=74.29 Aligned_cols=123 Identities=14% Similarity=0.196 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMEL 702 (1216)
Q Consensus 623 ~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eL 702 (1216)
...+++.+.++.+++++.....+.+..|..+...+.++++++|..+.+.++..+.....+..|+.+..++.+++..+..+
T Consensus 380 ~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~ 459 (1293)
T KOG0996|consen 380 KELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKE 459 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHH
Confidence 44445566677778888887777788888888888888888888888877777777777777777766666666666665
Q ss_pred HHHHHHHh--cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 000940 703 YQAILKME--GESGDGTLQQHADHIQNELEELVKILNDRCKQYGL 745 (1216)
Q Consensus 703 qaALa~lE--~r~eda~LQeRlk~iQ~kL~eLEKaL~earkq~GL 745 (1216)
+..|.+.. =..+-+.+++++..++.+|..+.+.+++++-++.+
T Consensus 460 ~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~v 504 (1293)
T KOG0996|consen 460 ERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDV 504 (1293)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555433 11233556677777777777666666666655544
No 121
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=97.17 E-value=0.015 Score=66.63 Aligned_cols=143 Identities=14% Similarity=0.176 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 616 EELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDI 695 (1216)
Q Consensus 616 ~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDi 695 (1216)
.+++.++..+.++.+.+..++.+|+....+ +.+++..++.+++.|..+-++..++.+.++..+...+.+++.+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~-------l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl 118 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREE-------LDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSL 118 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333 3344444444444444444444455666666666666777777
Q ss_pred HHHHHHHHHHHHHHhcCC--CC---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCcccc
Q 000940 696 QEKKMELYQAILKMEGES--GD---------------------GTLQQHADHIQNELEELVKILNDRCKQYGLRAKPTLL 752 (1216)
Q Consensus 696 Q~Q~~eLqaALa~lE~r~--ed---------------------a~LQeRlk~iQ~kL~eLEKaL~earkq~GL~aK~~~~ 752 (1216)
+.|+..+++.|..++.-+ .+ ...++.-.+||+-+.++-=.|.=.++++++..+. |
T Consensus 119 ~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~--y 196 (314)
T PF04111_consen 119 KNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQR--Y 196 (314)
T ss_dssp HHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SS--E
T ss_pred HHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccc--c
Confidence 777777777777666433 22 3356778999999999999999999998887542 4
Q ss_pred cccccCcccCccccc
Q 000940 753 VELPFGWQPGIQEGT 767 (1216)
Q Consensus 753 vElp~g~~~~~qe~a 767 (1216)
.=.|.|-.--|....
T Consensus 197 ~l~P~Gs~S~I~~~~ 211 (314)
T PF04111_consen 197 RLVPMGSFSKIEKLE 211 (314)
T ss_dssp EEE--GGG-EEEECS
T ss_pred eeEecCCCCEEEEec
Confidence 444555544444433
No 122
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.16 E-value=0.0084 Score=70.71 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHH
Q 000940 635 KMQELILYKSRCDNRLNEITERVSGDKREVELLAKKY 671 (1216)
Q Consensus 635 QmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kY 671 (1216)
++|+++.+..+|.+||+.++++=..|+++...++.++
T Consensus 383 k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl 419 (493)
T KOG0804|consen 383 KLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKL 419 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444444444444333333333333333333
No 123
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.15 E-value=0.042 Score=63.97 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELL 667 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~L 667 (1216)
+++.+..+++++++++.++..+-.+.+.|+.+++.+.++-+++..-+..+|-+..+|
T Consensus 135 AqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L 191 (499)
T COG4372 135 AQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDL 191 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555666666665555655666555555544444443333444444444
No 124
>PRK11281 hypothetical protein; Provisional
Probab=97.15 E-value=0.0055 Score=79.99 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=18.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 716 GTLQQHADHIQNELEELVKILNDRCK 741 (1216)
Q Consensus 716 a~LQeRlk~iQ~kL~eLEKaL~eark 741 (1216)
..++.++++++.++..|..+++++|.
T Consensus 230 d~~~~~~~~~~~~~~~lq~~in~kr~ 255 (1113)
T PRK11281 230 DYLTARIQRLEHQLQLLQEAINSKRL 255 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777666
No 125
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.13 E-value=0.0019 Score=60.67 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=56.8
Q ss_pred HHHHHHHHhhCCC--CCCcccHHHHHHHHHhC---CCC----HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHh
Q 000940 10 DLFEAYFRRADLD--GDGQISGAEAVAFFQGS---NLP----KQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQ 77 (1216)
Q Consensus 10 ~~Y~~vF~~lD~D--gDGkISg~Ea~~fL~~S---gLP----~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ 77 (1216)
.....+|..++.. .+|+|+.+|++.+|.+. .++ ...+.+||..+|.+++|.|+++||+..|..++.+.
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~~ 84 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVAA 84 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHh
Confidence 3456788888765 47899999999999742 244 89999999999999999999999999988776653
No 126
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.13 E-value=0.04 Score=59.50 Aligned_cols=139 Identities=18% Similarity=0.270 Sum_probs=75.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 000940 602 NAKLKEATEADKKVEELEKEILTSREKIQFCSTK--MQ--ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQ 677 (1216)
Q Consensus 602 n~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQ--mQ--EL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQ 677 (1216)
...+..+.++...|.+++.++++++.|..+|+.. .| .|..+... +++|-.++ ..-..||-.|+.++-..+.+
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~-e~~Lpqll---~~h~eEvr~Lr~~LR~~q~~ 83 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDT-EAELPQLL---QRHNEEVRVLRERLRKSQEQ 83 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3334455556677777777777777776666551 12 23333222 22233332 34555566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 000940 678 SGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGL 745 (1216)
Q Consensus 678 IsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~earkq~GL 745 (1216)
+.+++++|...+++|..++.++..|++-..+ .+-.+-..|+.+|..++.+|.+-++.+...-++.-|
T Consensus 84 ~r~~~~klk~~~~el~k~~~~l~~L~~L~~d-knL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 84 ERELERKLKDKDEELLKTKDELKHLKKLSED-KNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777766666665554331 111122456666666666555555555554444443
No 127
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.12 E-value=0.021 Score=69.24 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 000940 612 DKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQS 678 (1216)
Q Consensus 612 dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQI 678 (1216)
.++++-|+.++..++.++.-|+.=|.++...++..+..|..+..++.+-.-|+|.|+++.++++++|
T Consensus 258 ~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 258 PGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555555555555555555555554444333
No 128
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.12 E-value=0.024 Score=75.15 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Q 000940 717 TLQQHADHIQNELEELVKILNDRCKQYGLRA 747 (1216)
Q Consensus 717 ~LQeRlk~iQ~kL~eLEKaL~earkq~GL~a 747 (1216)
.++++-.++..++++|+++++...+..|+..
T Consensus 740 ~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~ 770 (1201)
T PF12128_consen 740 EIAAAKQEAKEQLKELEQQYNQELAGKGVDP 770 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3344444555666677777777777777754
No 129
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.12 E-value=0.054 Score=62.36 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH
Q 000940 677 QSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKIL 736 (1216)
Q Consensus 677 QIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL 736 (1216)
++..|.++|+.+..++...++++.++++.+.+++..= +.+.+++.+++.+|.++++.+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I--~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKI--EDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433222 122344455555555555543
No 130
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.11 E-value=0.054 Score=63.13 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhcHHHHHHH
Q 000940 648 NRLNEITERVSGDKREVELL 667 (1216)
Q Consensus 648 deLnei~eEvs~lKrEiE~L 667 (1216)
.+|..+.++-.++..+.+.|
T Consensus 151 trl~~l~~qr~ql~aq~qsl 170 (499)
T COG4372 151 TRLKTLAEQRRQLEAQAQSL 170 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 131
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=97.11 E-value=0.015 Score=73.26 Aligned_cols=161 Identities=8% Similarity=0.108 Sum_probs=81.6
Q ss_pred CCCCchhhHHHHhhhcHHHHH-HHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhHHHH
Q 000940 579 KSKVPELEKHLMDQLSKEEQE-SLNAKLKEAT----EADKKVEELEKEILTSREKIQFCSTKMQ--ELILYKSRCDNRLN 651 (1216)
Q Consensus 579 ks~~P~ldd~lL~ql~~Eee~-~ln~~rqEAe----E~dkKL~ELeaEi~~lrqEIE~lrtQmQ--EL~m~kqR~edeLn 651 (1216)
.+..|..-..++|.+-..|-+ .++.+.+++. .+++++.+++.++....++++.|+++-. .+....+...+++.
T Consensus 235 ~~~dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~ 314 (726)
T PRK09841 235 TGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIV 314 (726)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 556777777888887777763 3443333333 2777777777777777777776666432 11111111122233
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 000940 652 EITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEE 731 (1216)
Q Consensus 652 ei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~e 731 (1216)
++.++++.++.....|...|.+.+=++.+|+.+++.++.++..++.++.++-+...+ -..|+...+-.+.-+..
T Consensus 315 ~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~------~~~L~R~~~~~~~lY~~ 388 (726)
T PRK09841 315 NVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQE------VLRLSRDVEAGRAVYLQ 388 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH------HHHHHHHHHHHHHHHHH
Confidence 344444444444444444454444555555555555555544444444433322222 12344444444455555
Q ss_pred HHHHHHHHHHhhCc
Q 000940 732 LVKILNDRCKQYGL 745 (1216)
Q Consensus 732 LEKaL~earkq~GL 745 (1216)
|-+.++|+.-+..+
T Consensus 389 lL~r~~e~~i~~a~ 402 (726)
T PRK09841 389 LLNRQQELSISKSS 402 (726)
T ss_pred HHHHHHHHHHHhcc
Confidence 55555555554443
No 132
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=97.11 E-value=0.021 Score=60.11 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 614 KVEELEKEILTSREKIQFCSTKMQEL 639 (1216)
Q Consensus 614 KL~ELeaEi~~lrqEIE~lrtQmQEL 639 (1216)
++.+.+.++..+.+|++.++.+.+++
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~ 107 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQEL 107 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333333
No 133
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.10 E-value=0.0034 Score=60.32 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHH-------HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHH
Q 000940 438 VQKYTKVFVQVDIDRDGKITGEQAYNLF-------LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1216)
Q Consensus 438 k~ey~eaF~~fDkDgDG~ISgdELr~~f-------lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~ 505 (1216)
+.-+..+|..+-. +.+.|+..|++.+| ++..-..+.|++|+...|.|+||.|+|.||+..+--+..+
T Consensus 7 i~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 7 MEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred HHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 5678889999974 35799999999999 3445578899999999999999999999999765555444
No 134
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=97.09 E-value=0.0044 Score=66.66 Aligned_cols=93 Identities=17% Similarity=0.289 Sum_probs=53.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 000940 598 QESLNAKLKEATEADKKVEELEKEILT----SREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEE 673 (1216)
Q Consensus 598 e~~ln~~rqEAeE~dkKL~ELeaEi~~----lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE 673 (1216)
+-+|.+ |..+++.+|..++++..+ -..+....+.++++|-.|+.+-..+|.+ -.......+..++..++.
T Consensus 98 evrLkr---ELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~---~~~~~~~~l~~v~~Dl~~ 171 (195)
T PF12761_consen 98 EVRLKR---ELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE---GRSKSGKNLKSVREDLDT 171 (195)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc---cCCCCCCCHHHHHHHHHH
Confidence 334555 444444777777777765 2345566777888888888765443332 222334445555556665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000940 674 KYKQSGDVASKLTLEEATFRDIQ 696 (1216)
Q Consensus 674 ~~kQIsELqsqIA~lEaeLqDiQ 696 (1216)
+..||..|++-|+.-+.+|++++
T Consensus 172 ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 172 IEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666666666655555555553
No 135
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=97.09 E-value=0.011 Score=70.51 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCccHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 683 SKLTLEEATFRDIQEKKMELYQAILKMEGES--------GDGTLQQHADHIQNELEELVKILNDRC 740 (1216)
Q Consensus 683 sqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~--------eda~LQeRlk~iQ~kL~eLEKaL~ear 740 (1216)
.++..+++++..++.++..|++.+++++.+. +-..|+..++..+..++.|.+.+.+++
T Consensus 317 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 317 IELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443221 223444444444444555545555444
No 136
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.09 E-value=0.014 Score=71.60 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKY 671 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kY 671 (1216)
+..++.+++.+|+.+-+.++....-.+.+.....++.+.|..+.++...++.|++.|.+.|
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY 340 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSY 340 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445555555555555555544444445555666666777777777777777777776663
No 137
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.09 E-value=0.0016 Score=69.78 Aligned_cols=64 Identities=27% Similarity=0.379 Sum_probs=53.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHh---CCCC--HH----HHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 000940 10 DLFEAYFRRADLDGDGQISGAEAVAFFQG---SNLP--KQ----VLAQVWSHADQRKAGFLNRAEFFNALKLV 73 (1216)
Q Consensus 10 ~~Y~~vF~~lD~DgDGkISg~Ea~~fL~~---SgLP--~~----~L~qIW~LAD~d~DG~LdrdEF~vAM~LV 73 (1216)
...+=.|+.+|.+++|+|+.+|+..++.. .+.. .+ .+.++...+|.|+||+|+++||+.++.-.
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 45666899999999999999999988776 3566 44 45566788999999999999999998754
No 138
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.08 E-value=0.0036 Score=75.89 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEI----LTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK 674 (1216)
Q Consensus 611 ~dkKL~ELeaEi----~~lrqEIE-~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~ 674 (1216)
+..-|.|+++++ ...+++|+ ||+.++++++....|.-...+...+|+...+..|..|+.++-++
T Consensus 247 L~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klsel 315 (546)
T KOG0977|consen 247 LALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSEL 315 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccc
Confidence 556666777665 56677888 99999999886666655444555555555555555444444333
No 139
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.08 E-value=0.022 Score=76.19 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 636 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVA--------SKLTLEEATFRDIQEKKMELYQAIL 707 (1216)
Q Consensus 636 mQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELq--------sqIA~lEaeLqDiQ~Q~~eLqaALa 707 (1216)
+.++.....++.+++.....++.+++.+++.|+.+.+++.+++.+|+ +.+..++.+++++.++.......+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~ 357 (1353)
T TIGR02680 278 YDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIR 357 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555555444444444444444 2233333344444444444444443
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 000940 708 KMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYG 744 (1216)
Q Consensus 708 ~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~earkq~G 744 (1216)
..+.+. ..++.+++++...+.++++.+.++...++
T Consensus 358 ~a~~~~--e~~~~~~~~~~~r~~~~~~~l~~~~~el~ 392 (1353)
T TIGR02680 358 EAESRL--EEERRRLDEEAGRLDDAERELRAAREQLA 392 (1353)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222 33455555555555555555555544444
No 140
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.07 E-value=0.033 Score=68.88 Aligned_cols=128 Identities=16% Similarity=0.229 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHH---HHHHHHHHHHHHHHH
Q 000940 606 KEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELL---AKKYEEKYKQSGDVA 682 (1216)
Q Consensus 606 qEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~L---r~kYEE~~kQIsELq 682 (1216)
+|.++++++|.++..++..+..+++.++.++.++.....+...++.++.++++-.++-++.| +.-+++++..|..-.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~ 407 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASE 407 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 35666778888888888888888888888777777776666666666666666555555555 445666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHHHHHHH
Q 000940 683 SKLTLEEATFRDIQEKKMELYQAILKMEGESGD--GTLQQHADHIQNELEELV 733 (1216)
Q Consensus 683 sqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~ed--a~LQeRlk~iQ~kL~eLE 733 (1216)
+++..|..++...+.-+.+-...|.......+. ..+.++|+.+..++++++
T Consensus 408 ~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~ 460 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIE 460 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776655555555543322222 233444555555555553
No 141
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.05 E-value=0.046 Score=60.17 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 635 KMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK 684 (1216)
Q Consensus 635 QmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsq 684 (1216)
.+..|.......+.+|+.+..++...++.++....+|++....+..++..
T Consensus 79 ~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~ 128 (237)
T PF00261_consen 79 ARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQE 128 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555556666666666666666666666655444444433
No 142
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.04 E-value=0.024 Score=64.47 Aligned_cols=70 Identities=27% Similarity=0.235 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 000940 606 KEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY 675 (1216)
Q Consensus 606 qEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~ 675 (1216)
..+.++..+..++.+++..++++.+-+..++.++....+.+-.+.+++.++|..+|.+...+-.+.+++.
T Consensus 20 ~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~ 89 (294)
T COG1340 20 EEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELR 89 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666667777666666666666666666666666666666666666655555554444444433
No 143
>PRK11519 tyrosine kinase; Provisional
Probab=97.03 E-value=0.024 Score=71.41 Aligned_cols=161 Identities=10% Similarity=0.080 Sum_probs=90.6
Q ss_pred CCCCchhhHHHHhhhcHHHHHHHHHhHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhHHHH
Q 000940 579 KSKVPELEKHLMDQLSKEEQESLNAKLKE-AT----EADKKVEELEKEILTSREKIQFCSTKMQ--ELILYKSRCDNRLN 651 (1216)
Q Consensus 579 ks~~P~ldd~lL~ql~~Eee~~ln~~rqE-Ae----E~dkKL~ELeaEi~~lrqEIE~lrtQmQ--EL~m~kqR~edeLn 651 (1216)
.+.-|+.-..++|.+-..|-+.....+.+ ++ .+++++.+++.++....++++.|+.+-. .+........+.+.
T Consensus 235 ~~~dP~~Aa~iaN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~ 314 (719)
T PRK11519 235 TGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMV 314 (719)
T ss_pred EcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 45567777777777777665544332222 22 2777888888888777777777766432 22222233333455
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 000940 652 EITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEE 731 (1216)
Q Consensus 652 ei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~e 731 (1216)
++..++.+++.++..|...|.+.+-++.+|.++++.++.++..++.++.++.+...++ ..|+...+-.+.-++.
T Consensus 315 ~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~------~~L~Re~~~~~~lY~~ 388 (719)
T PRK11519 315 NIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEI------VRLTRDVESGQQVYMQ 388 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH------HHHHHHHHHHHHHHHH
Confidence 5555555666666666666666666666666666666666666665555444333221 2344444444455555
Q ss_pred HHHHHHHHHHhhCc
Q 000940 732 LVKILNDRCKQYGL 745 (1216)
Q Consensus 732 LEKaL~earkq~GL 745 (1216)
|-+.+.|++-...+
T Consensus 389 lL~r~~e~~i~~a~ 402 (719)
T PRK11519 389 LLNKQQELKITEAS 402 (719)
T ss_pred HHHHHHHHhHHhcC
Confidence 55555555554443
No 144
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.02 E-value=0.084 Score=57.07 Aligned_cols=142 Identities=15% Similarity=0.201 Sum_probs=69.1
Q ss_pred HHhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhcHHHHHHH
Q 000940 589 LMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRL-NEITERVSGDKREVELL 667 (1216)
Q Consensus 589 lL~ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeL-nei~eEvs~lKrEiE~L 667 (1216)
+|++...+-++.+.+-++....+-.....++.++.....+++-+..+...- +..+ .++| .....++..++.+++.|
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A-l~~g--~edLAr~al~~k~~~e~~~~~l 103 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA-LAAG--REDLAREALQRKADLEEQAERL 103 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333233333344444555555555444333211 1111 1112 33445555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhcCCCCccHHHHHHHHHHHHHHHH
Q 000940 668 AKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL---------KMEGESGDGTLQQHADHIQNELEELV 733 (1216)
Q Consensus 668 r~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa---------~lE~r~eda~LQeRlk~iQ~kL~eLE 733 (1216)
+..|++...++..|...|..++..|++++.++..|..-.. ..-........-..+.++..++.+++
T Consensus 104 ~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~e 178 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEME 178 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666555443332 21122223445666777777777665
No 145
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=97.02 E-value=0.021 Score=57.59 Aligned_cols=94 Identities=17% Similarity=0.277 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQ----ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 686 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQ----EL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA 686 (1216)
+...|..++.|+..+++++..+..+-. ||..--.+++ ++.....++..++++++.|+.+|+....-+.+-.+.+.
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e-~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ve 99 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE-ELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVE 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 445666666666666666665555333 3333333333 36777788889999999999999998888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000940 687 LEEATFRDIQEKKMELYQA 705 (1216)
Q Consensus 687 ~lEaeLqDiQ~Q~~eLqaA 705 (1216)
.|++.++|+|.-+..+-+.
T Consensus 100 EL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 100 ELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999888765443
No 146
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.00 E-value=0.001 Score=71.48 Aligned_cols=61 Identities=30% Similarity=0.455 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHH------c-------CCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHH
Q 000940 440 KYTKVFVQVDIDRDGKITGEQAYNLFL------S-------WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (1216)
Q Consensus 440 ey~eaF~~fDkDgDG~ISgdELr~~fl------g-------s~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~ 500 (1216)
+++=+|..+|.|++|+|+.+|+..++. + ...+++-+..||..+|.|+||.|+++||+-++.
T Consensus 101 kl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 101 KLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 444559999999999999999887771 2 123577889999999999999999999986543
No 147
>PLN02964 phosphatidylserine decarboxylase
Probab=96.99 E-value=0.0023 Score=79.26 Aligned_cols=68 Identities=18% Similarity=0.331 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHH
Q 000940 433 MTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (1216)
Q Consensus 433 LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~ 500 (1216)
.+.++...++++|..+|.|++|.|+.+|+..+| ++...++++|.++++.+|.|++|+|+++||+.+|.
T Consensus 173 pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~ 242 (644)
T PLN02964 173 PVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLA 242 (644)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence 345555678999999999999999999999999 45568899999999999999999999999995443
No 148
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.99 E-value=0.043 Score=70.28 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000940 719 QQHADHIQNELEELVKILNDRCK 741 (1216)
Q Consensus 719 QeRlk~iQ~kL~eLEKaL~eark 741 (1216)
+++|.+.+++|..|||.+.+..+
T Consensus 1723 ~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1723 EQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHH
Confidence 34566666666666665555554
No 149
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=96.98 E-value=0.029 Score=61.70 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 688 EEATFRDIQEKKMELYQAILKMEGESGD-----GTLQQHADHIQNELEELVKILNDRCKQ 742 (1216)
Q Consensus 688 lEaeLqDiQ~Q~~eLqaALa~lE~r~ed-----a~LQeRlk~iQ~kL~eLEKaL~earkq 742 (1216)
+++++.-++.++..++.++.....+.+. ..++.|+..++.+|..|...+++.|..
T Consensus 155 l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~ 214 (240)
T PF12795_consen 155 LQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQ 214 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666555555532222211 345677777778888888888877764
No 150
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.96 E-value=0.021 Score=76.59 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 718 LQQHADHIQNELEELVKILNDRCKQ 742 (1216)
Q Consensus 718 LQeRlk~iQ~kL~eLEKaL~earkq 742 (1216)
|..++.++.....-|+.++++.|++
T Consensus 1358 lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1358 LTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444433
No 151
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.95 E-value=0.054 Score=69.00 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 629 IQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 629 IE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~ 708 (1216)
|..+++++++-...-.+.+++.+.+.-++.++++++..+++.++++.++|+.|.+.|..+++.+..++.....++++|.+
T Consensus 796 ik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~ 875 (1174)
T KOG0933|consen 796 IKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKD 875 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Confidence 33333333333333333344455555555566666666666666666666666666666666666666666666666654
No 152
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=96.95 E-value=0.044 Score=60.62 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=12.2
Q ss_pred ccccchhccc---hhcccccccchhhhhhh
Q 000940 764 QEGTADWDED---WDKLEDEGFTFVKELTL 790 (1216)
Q Consensus 764 qe~a~~w~ed---w~~~~d~gf~~~~~~t~ 790 (1216)
-..+..||.. |-.|.+ ++.++|..
T Consensus 201 g~~~g~~~~~~~~W~~l~~---~~~~~i~~ 227 (251)
T PF11932_consen 201 GSQAGVWDPATGQWQWLPD---SYRREIRK 227 (251)
T ss_pred ccceeeecCCCCCCeECCH---HHHHHHHH
Confidence 3445556643 666633 34455543
No 153
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.95 E-value=0.061 Score=65.66 Aligned_cols=86 Identities=13% Similarity=0.168 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCccHHHH
Q 000940 647 DNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME-----GESGDGTLQQH 721 (1216)
Q Consensus 647 edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE-----~r~eda~LQeR 721 (1216)
..+|+.++.++..++..++.|+.+++..+..+..|+.+.......+..+..++..+...|..+. .+.....|...
T Consensus 294 k~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~ 373 (522)
T PF05701_consen 294 KKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKA 373 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 3345555566667777777888888888888888887777666666777777666666665443 12233455566
Q ss_pred HHHHHHHHHHH
Q 000940 722 ADHIQNELEEL 732 (1216)
Q Consensus 722 lk~iQ~kL~eL 732 (1216)
|+++..+.++.
T Consensus 374 Lqql~~Eae~A 384 (522)
T PF05701_consen 374 LQQLSSEAEEA 384 (522)
T ss_pred HHHHHHHHHHH
Confidence 66666555544
No 154
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.94 E-value=0.023 Score=69.34 Aligned_cols=118 Identities=19% Similarity=0.280 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000940 650 LNEITERVSGDKREVELLAKKYEEKYKQSGDVASK---------------LTLEEATFRDIQEKKMELYQAILKMEGESG 714 (1216)
Q Consensus 650 Lnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsq---------------IA~lEaeLqDiQ~Q~~eLqaALa~lE~r~e 714 (1216)
++-+..++...+.-|..|+.+++++..|+...++. |-..+.+++++-+.+..+++++.+....-+
T Consensus 237 v~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~ 316 (629)
T KOG0963|consen 237 VSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHK 316 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555444444332 334467888888888888888887543222
Q ss_pred C--ccHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCcccccccccCcccCcccccchhc
Q 000940 715 D--GTLQQHADHIQNELEELVKILNDRCKQYGLRAKPTLLVELPFGWQPGIQEGTADWD 771 (1216)
Q Consensus 715 d--a~LQeRlk~iQ~kL~eLEKaL~earkq~GL~aK~~~~vElp~g~~~~~qe~a~~w~ 771 (1216)
. ..|-..++.....|++|++.|+.+..|--++-+-+++-++=||-- |.|-.||
T Consensus 317 ~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ief~~s----e~a~~~~ 371 (629)
T KOG0963|consen 317 AQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAIEFGDS----EEANDED 371 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhcCCc----ccccccc
Confidence 2 333444444445556666666666555555555556666666622 4555565
No 155
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.92 E-value=0.06 Score=58.03 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 615 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRD 694 (1216)
Q Consensus 615 L~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqD 694 (1216)
|.-++.--..+.+++.-++.+|+-++.-.+.. +.+.+++..+|-.+..|+.++..+..|...+++..+.+.+++..
T Consensus 31 ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a----K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~ 106 (193)
T PF14662_consen 31 VETAEEGNAQLAEEITDLRKQLKSLQQALQKA----KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIET 106 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334666777788888887765444433 44677777788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 000940 695 IQEKKMELYQAILKMEGES 713 (1216)
Q Consensus 695 iQ~Q~~eLqaALa~lE~r~ 713 (1216)
+|++...|......+..+.
T Consensus 107 Lqeen~kl~~e~~~lk~~~ 125 (193)
T PF14662_consen 107 LQEENGKLLAERDGLKKRS 125 (193)
T ss_pred HHHHHhHHHHhhhhHHHHH
Confidence 8877777777766655444
No 156
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=96.92 E-value=0.1 Score=58.28 Aligned_cols=124 Identities=19% Similarity=0.306 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHhhhhHHHHHHHHHHHhcHHHHHH------------HHHHHHH
Q 000940 619 EKEILTSREKIQFCSTKMQ-------------ELILYKSRCDNRLNEITERVSGDKREVEL------------LAKKYEE 673 (1216)
Q Consensus 619 eaEi~~lrqEIE~lrtQmQ-------------EL~m~kqR~edeLnei~eEvs~lKrEiE~------------Lr~kYEE 673 (1216)
++|.++..-+|.+|+.+.+ .+.+.-.|+.++|.+.+..+.++..||-. |-.||--
T Consensus 142 EQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~ 221 (330)
T KOG2991|consen 142 EQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRT 221 (330)
T ss_pred HHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHH
Confidence 4445555555555555443 34456666666677666666666666653 3233333
Q ss_pred HHHHHHHHHHH-----HHHHHHHHH-------HHHHHHHHHHHHHHHHh----cCC-CCccHHHHHHHHHHHHHHHHHHH
Q 000940 674 KYKQSGDVASK-----LTLEEATFR-------DIQEKKMELYQAILKME----GES-GDGTLQQHADHIQNELEELVKIL 736 (1216)
Q Consensus 674 ~~kQIsELqsq-----IA~lEaeLq-------DiQ~Q~~eLqaALa~lE----~r~-eda~LQeRlk~iQ~kL~eLEKaL 736 (1216)
++.+-.+|-.+ |+.||.+|. .++.+..+|.+=+.+|. +-+ .--.||++|+.-..+|..|+|-+
T Consensus 222 L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 222 LQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333322 555555554 44444555555555443 111 22567778877777777777766
Q ss_pred HHHHHh
Q 000940 737 NDRCKQ 742 (1216)
Q Consensus 737 ~earkq 742 (1216)
.+..+-
T Consensus 302 ~q~sqa 307 (330)
T KOG2991|consen 302 EQVSQA 307 (330)
T ss_pred HHHHHH
Confidence 655553
No 157
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.12 Score=58.32 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 679 GDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 679 sELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
..|..-+.++|..+.++..|+.++...+..+.
T Consensus 172 e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~a 203 (265)
T COG3883 172 ETLVALQNELETQLNSLNSQKAEKNALIAALA 203 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455555566666555555555433
No 158
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.92 E-value=0.069 Score=63.77 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=16.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000940 717 TLQQHADHIQNELEELVKILNDRCKQY 743 (1216)
Q Consensus 717 ~LQeRlk~iQ~kL~eLEKaL~earkq~ 743 (1216)
.++++|.+++.+|++++..+..+..++
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666677777766666555543
No 159
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.90 E-value=0.045 Score=67.98 Aligned_cols=13 Identities=15% Similarity=-0.005 Sum_probs=6.9
Q ss_pred CcccCcccccchh
Q 000940 758 GWQPGIQEGTADW 770 (1216)
Q Consensus 758 g~~~~~qe~a~~w 770 (1216)
+|++...|+-++.
T Consensus 245 ~~q~l~~e~e~L~ 257 (617)
T PF15070_consen 245 AYQQLASEKEELH 257 (617)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555544
No 160
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.044 Score=66.01 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 610 EADKKVEELEKEILTSREKIQFCST 634 (1216)
Q Consensus 610 E~dkKL~ELeaEi~~lrqEIE~lrt 634 (1216)
.+++++.||+++|+..|.+++.++.
T Consensus 47 ~Lkqq~eEleaeyd~~R~Eldqtke 71 (772)
T KOG0999|consen 47 DLKQQLEELEAEYDLARTELDQTKE 71 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999988888885544
No 161
>PF14658 EF-hand_9: EF-hand domain
Probab=96.89 E-value=0.002 Score=58.64 Aligned_cols=59 Identities=14% Similarity=0.278 Sum_probs=54.3
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhC---CCCHHHHHHHHHhhcCCCC-CCCCHHHHHHHHHH
Q 000940 14 AYFRRADLDGDGQISGAEAVAFFQGS---NLPKQVLAQVWSHADQRKA-GFLNRAEFFNALKL 72 (1216)
Q Consensus 14 ~vF~~lD~DgDGkISg~Ea~~fL~~S---gLP~~~L~qIW~LAD~d~D-G~LdrdEF~vAM~L 72 (1216)
..|+.+|+++.|+|....++.+|+.. +..+..|..+.+++|+++. |.|+++.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 36999999999999999999999885 4578999999999999888 99999999999985
No 162
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.89 E-value=0.034 Score=60.20 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=20.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 000940 716 GTLQQHADHIQNELEELVKILNDRCKQYGLR 746 (1216)
Q Consensus 716 a~LQeRlk~iQ~kL~eLEKaL~earkq~GL~ 746 (1216)
-.|+.+|..+...|+.-+..|++.....+|.
T Consensus 146 ~lLEkKl~~l~~~lE~keaqL~evl~~~nld 176 (201)
T PF13851_consen 146 LLLEKKLQALSEQLEKKEAQLNEVLAAANLD 176 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4566667777777776677777766666553
No 163
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=96.86 E-value=0.0024 Score=68.69 Aligned_cols=70 Identities=23% Similarity=0.231 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHHhcC
Q 000940 439 QKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG 508 (1216)
Q Consensus 439 ~ey~eaF~~fDkDgDG~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~l~G 508 (1216)
.-.+.+|+.||+|++|.|+-.|+...| .-.+-.++-|.=.+.++|.|+||+|+++|++..+.-|......
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~ 135 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGS 135 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHccc
Confidence 344578999999999999999977777 3456778888888999999999999999999777777766554
No 164
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.86 E-value=0.075 Score=59.15 Aligned_cols=74 Identities=20% Similarity=0.169 Sum_probs=40.3
Q ss_pred HHHHhcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCC---CCccHHHHHHHH
Q 000940 655 ERVSGDKREVELLAKKYEE----KYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME--GES---GDGTLQQHADHI 725 (1216)
Q Consensus 655 eEvs~lKrEiE~Lr~kYEE----~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE--~r~---eda~LQeRlk~i 725 (1216)
.+..+++-|++.++.+.|. -++|++.|+..++-+.+.-.++++.+.+|+++-.+|| -|. ....+.+||.++
T Consensus 66 t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqA 145 (333)
T KOG1853|consen 66 TRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQA 145 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHH
Confidence 3444455555555444443 3466677666666666666666666666666666555 111 114455566655
Q ss_pred HHH
Q 000940 726 QNE 728 (1216)
Q Consensus 726 Q~k 728 (1216)
..+
T Consensus 146 IEr 148 (333)
T KOG1853|consen 146 IER 148 (333)
T ss_pred HHH
Confidence 533
No 165
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.85 E-value=0.0023 Score=75.21 Aligned_cols=56 Identities=29% Similarity=0.372 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHH
Q 000940 438 VQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMER 504 (1216)
Q Consensus 438 k~ey~eaF~~fDkDgDG~ISgdELr~~flgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~ 504 (1216)
+..++.+|+.+|.|+||+|+.+|+.. +..+|..+|.|+||+|+++||..+|..+.+
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 46678899999999999999999842 578999999999999999999988877664
No 166
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=96.84 E-value=0.017 Score=68.91 Aligned_cols=97 Identities=18% Similarity=0.254 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKM-----QELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 685 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQm-----QEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqI 685 (1216)
++.||.+++.+...++.|+..|+++. +|- .-.+-|..+|+.+..+++....+|+.+-.+....+-+++.|.++|
T Consensus 164 L~ekLk~~~een~~lr~k~~llk~Et~~~~~keq-~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql 242 (596)
T KOG4360|consen 164 LQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQ-QLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQL 242 (596)
T ss_pred HHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666655555421 111 122334455565666666665555544333333333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000940 686 TLEEATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 686 A~lEaeLqDiQ~Q~~eLqaALa~ 708 (1216)
.++...++-+.-++++|-+-|+.
T Consensus 243 ~d~qkk~k~~~~Ekeel~~~Lq~ 265 (596)
T KOG4360|consen 243 VDLQKKIKYLRHEKEELDEHLQA 265 (596)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443433
No 167
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.84 E-value=0.051 Score=68.96 Aligned_cols=85 Identities=15% Similarity=0.271 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHhhhhHHHHHHHHHHHhcHHHH
Q 000940 606 KEATEADKKVEELEKEILTSREKIQFCSTKMQELI---------------------LYKSRCDNRLNEITERVSGDKREV 664 (1216)
Q Consensus 606 qEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~---------------------m~kqR~edeLnei~eEvs~lKrEi 664 (1216)
.+.+.+..++.+|++.+..++++.+.+..+.+++. .+.+...+.|+.+..++.+.++|+
T Consensus 265 d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL 344 (1200)
T KOG0964|consen 265 DESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDEL 344 (1200)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444666777777777666666554444322111 223334555666666666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 665 ELLAKKYEEKYKQSGDVASKLTLEEA 690 (1216)
Q Consensus 665 E~Lr~kYEE~~kQIsELqsqIA~lEa 690 (1216)
...+-+|+.++.+-+.+..+|+.++.
T Consensus 345 ~~I~Pky~~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 345 SKIEPKYNSLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred HHhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 76666666666444444444444443
No 168
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=96.84 E-value=0.11 Score=58.33 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=36.1
Q ss_pred HHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHH
Q 000940 601 LNAKLKEATE-ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYE 672 (1216)
Q Consensus 601 ln~~rqEAeE-~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYE 672 (1216)
++.++++.++ ..+++..|+.|+..+..+|...+.++.-|..|+.. + .--..-+|+.|.++|+.|+...+
T Consensus 68 ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~-E--YPvK~vqIa~L~rqlq~lk~~qq 137 (258)
T PF15397_consen 68 AKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDH-E--YPVKAVQIANLVRQLQQLKDSQQ 137 (258)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554 55666666666666666666555555555555542 1 22222345556666665544433
No 169
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.069 Score=68.07 Aligned_cols=46 Identities=11% Similarity=0.212 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 665 ELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 665 E~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
+.-+.+|+.++.++.+|+..|...+.+|..+..++..|...+.+++
T Consensus 811 ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~ 856 (1174)
T KOG0933|consen 811 EKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLE 856 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445545555555555555555555555555544444444433
No 170
>PLN02939 transferase, transferring glycosyl groups
Probab=96.80 E-value=0.021 Score=73.46 Aligned_cols=87 Identities=17% Similarity=0.163 Sum_probs=50.2
Q ss_pred HHHhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH----HHhhh
Q 000940 588 HLMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTS-----------------REKIQFCSTKMQELIL----YKSRC 646 (1216)
Q Consensus 588 ~lL~ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~l-----------------rqEIE~lrtQmQEL~m----~kqR~ 646 (1216)
++|+|++-..-+.+++-+.|.|++++||+-|++.+.+. .++++.++..|-.... ....+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (977)
T PLN02939 145 LLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSL 224 (977)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccH
Confidence 56677777777777777788888888888888776442 2223333332211000 11123
Q ss_pred hHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 000940 647 DNRLNEITERVSGDKREVELLAKKYEEK 674 (1216)
Q Consensus 647 edeLnei~eEvs~lKrEiE~Lr~kYEE~ 674 (1216)
..||+.+++|-.-+|..++.|+.++.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFLKAELIEV 252 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666655443
No 171
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.80 E-value=0.068 Score=67.88 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 613 KKVEELEKEILTSREKIQFCSTKMQELIL-------YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 685 (1216)
Q Consensus 613 kKL~ELeaEi~~lrqEIE~lrtQmQEL~m-------~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqI 685 (1216)
.|+..+..++..-..++..++++|..+.. .+..+...|.....+...|..++++|+.++++...+|...+.+|
T Consensus 287 ~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~ 366 (775)
T PF10174_consen 287 SKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQI 366 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666665555566666666654443 33334444444445555666667777777777776666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 686 TLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQ 742 (1216)
Q Consensus 686 A~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~earkq 742 (1216)
..++.++..++.++..|.+.+.. ...+|..++.+|+.|+..|.+.-++
T Consensus 367 ~~~qeE~~~~~~Ei~~l~d~~d~---------~e~ki~~Lq~kie~Lee~l~ekd~q 414 (775)
T PF10174_consen 367 EKLQEEKSRLQGEIEDLRDMLDK---------KERKINVLQKKIENLEEQLREKDRQ 414 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555555555544 2445777777777776666554443
No 172
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.80 E-value=0.031 Score=73.13 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000940 688 EEATFRDIQEKKMELYQAILKMEGESGD-----GTLQQHADHIQNELEELVKILNDRCKQY 743 (1216)
Q Consensus 688 lEaeLqDiQ~Q~~eLqaALa~lE~r~ed-----a~LQeRlk~iQ~kL~eLEKaL~earkq~ 743 (1216)
+++|++-++.|+..++.++.....+.+- ..++.|+++++.++..|..+++++|++.
T Consensus 178 lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~ 238 (1109)
T PRK10929 178 LQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQRE 238 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666655533322222 3466777888888888888888877743
No 173
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.80 E-value=0.035 Score=69.93 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=14.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 000940 716 GTLQQHADHIQNELEELVKILNDRCKQYG 744 (1216)
Q Consensus 716 a~LQeRlk~iQ~kL~eLEKaL~earkq~G 744 (1216)
..|+.+.+-.+.-++.|-+.+.|++-+..
T Consensus 379 ~~L~Re~~~~~~~Y~~ll~r~~e~~~~~~ 407 (754)
T TIGR01005 379 DALQRDAAAKRQLYESYLTNYRQAASRQN 407 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444555555555555554443
No 174
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=96.80 E-value=0.11 Score=57.45 Aligned_cols=100 Identities=18% Similarity=0.253 Sum_probs=45.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000940 637 QELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDG 716 (1216)
Q Consensus 637 QEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda 716 (1216)
+++.....++..++..+.+++.+++++++.++.++++...++....+.+...+...+...+++.++++.+..
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------- 130 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEE-------- 130 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 344444444444455555555555555555555555444444444444442233333333333333333332
Q ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHhhCc
Q 000940 717 TLQQHADHIQNELEEL-VKILNDRCKQYGL 745 (1216)
Q Consensus 717 ~LQeRlk~iQ~kL~eL-EKaL~earkq~GL 745 (1216)
+++++..++.+|..- ...+++.+.=|.+
T Consensus 131 -~~~~l~~l~~~l~~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 131 -RKQRLSQLQSQLARRRRQLIQELSEIFPI 159 (302)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 233344444444422 3445555556666
No 175
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.79 E-value=0.068 Score=67.22 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHH-------HHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEI-------LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKR-------EVELLAKKYEEKYK 676 (1216)
Q Consensus 611 ~dkKL~ELeaEi-------~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKr-------EiE~Lr~kYEE~~k 676 (1216)
|..+|.+|+.++ .+-+.+.+.+....++|.......+.+...++++|+..|- +.-+|+.+--.++|
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQK 111 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQK 111 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445555555554 4444444444444444444444443333334444443333 33334444444456
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH-HHHHHH-HHHHHHHHHhhCcc
Q 000940 677 QSGDVASKLTL---EEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQ-NELEEL-VKILNDRCKQYGLR 746 (1216)
Q Consensus 677 QIsELqsqIA~---lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ-~kL~eL-EKaL~earkq~GL~ 746 (1216)
||+.|...--+ +..+|+.+.+.+..|...|++ + .||++|- .+|+|- +-...||=|++-|+
T Consensus 112 qvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee-------~---~rLk~iae~qleEALesl~~EReqk~~Lr 176 (717)
T PF09730_consen 112 QVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEE-------A---ARLKEIAEKQLEEALESLKSEREQKNALR 176 (717)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666544222 223455555555555544444 4 4677665 778854 44444444455554
No 176
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.78 E-value=0.032 Score=68.97 Aligned_cols=123 Identities=16% Similarity=0.221 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 617 ELEKEILTSREKIQFCSTKMQ----ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 692 (1216)
Q Consensus 617 ELeaEi~~lrqEIE~lrtQmQ----EL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeL 692 (1216)
+|..|+..++++-+.+-.++| .++..+.++. +....++..+....+.|+.++.+....+++|..++..++..+
T Consensus 475 dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~Ar---EqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~l 551 (739)
T PF07111_consen 475 DLSLELQQLREERDRLDAELQLSARLIQQEVGRAR---EQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSL 551 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 555566666666666655555 1222333322 234555667777777888888888888999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH----HHHHHHHHHHHHHHHhh
Q 000940 693 RDIQEKKMELYQAILKMEGESGDGTLQQHADHIQ----NELEELVKILNDRCKQY 743 (1216)
Q Consensus 693 qDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ----~kL~eLEKaL~earkq~ 743 (1216)
+...++-..|...|......|+.+ ||+|..++. .+|.++|+-||++|..+
T Consensus 552 qes~eea~~lR~EL~~QQ~~y~~a-lqekvsevEsrl~E~L~~~E~rLNeARREH 605 (739)
T PF07111_consen 552 QESTEEAAELRRELTQQQEVYERA-LQEKVSEVESRLREQLSEMEKRLNEARREH 605 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888866556444 899999888 45567799999988744
No 177
>PRK12704 phosphodiesterase; Provisional
Probab=96.77 E-value=0.069 Score=65.24 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=13.8
Q ss_pred HHHHHHHHhhCcc--c-CcccccccccC
Q 000940 734 KILNDRCKQYGLR--A-KPTLLVELPFG 758 (1216)
Q Consensus 734 KaL~earkq~GL~--a-K~~~~vElp~g 758 (1216)
+.+..+.|+|.-. + +-...|.||--
T Consensus 192 ~i~~~a~qr~a~~~~~e~~~~~v~lp~d 219 (520)
T PRK12704 192 EILAQAIQRCAADHVAETTVSVVNLPND 219 (520)
T ss_pred HHHHHHHHhhcchhhhhhceeeeecCCc
Confidence 3455566655532 1 33458888864
No 178
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=96.77 E-value=0.018 Score=66.32 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTK 635 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQ 635 (1216)
+++++.+++.++.+.+.++..|+.+
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666666666666655554
No 179
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.75 E-value=0.0013 Score=50.57 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCCCCccCHHHHHHHHH
Q 000940 474 VLKQVWDLSDQDNDGMLSLKEFCTALY 500 (1216)
Q Consensus 474 eL~qIW~LaDiD~DGkLdfdEFvvAM~ 500 (1216)
+|++|++.+|.|+||+|+++||+.+|.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 355666666666666666666665543
No 180
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.74 E-value=0.0036 Score=74.77 Aligned_cols=73 Identities=26% Similarity=0.454 Sum_probs=63.2
Q ss_pred CCCC--CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCC-----CHHHHHHHHHHhCCCCCCccCHHHHHHHHH
Q 000940 428 VPWP--KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRL-----PREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (1216)
Q Consensus 428 ~~Wp--~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~flgs~L-----peeeL~qIW~LaDiD~DGkLdfdEFvvAM~ 500 (1216)
.+|. .++.+|+..+++.|..+| |++|+|+..|+..+|.+.++ .+++++.|+...+.|.+|+|+|+||+.++.
T Consensus 6 ~~~~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 6 DPWLQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred chhhcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 3553 589999999999999999 99999999999999965443 379999999999999999999999996443
Q ss_pred H
Q 000940 501 L 501 (1216)
Q Consensus 501 L 501 (1216)
-
T Consensus 85 ~ 85 (627)
T KOG0046|consen 85 N 85 (627)
T ss_pred h
Confidence 3
No 181
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.74 E-value=0.13 Score=52.12 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000940 613 KKVEELEKEILTSREKIQFCST 634 (1216)
Q Consensus 613 kKL~ELeaEi~~lrqEIE~lrt 634 (1216)
.++.+.+.++..++++++....
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~ 38 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAK 38 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 182
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=96.73 E-value=0.18 Score=55.01 Aligned_cols=80 Identities=8% Similarity=0.077 Sum_probs=47.7
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCCCccHHHHHHH
Q 000940 654 TERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME---------GESGDGTLQQHADH 724 (1216)
Q Consensus 654 ~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE---------~r~eda~LQeRlk~ 724 (1216)
..+.......++.|+.+|+....+|.+|+.+|..++..|+.++.+...|-+-...++ .+....+.-..+.+
T Consensus 91 l~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer 170 (219)
T TIGR02977 91 LIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQ 170 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 334445555666667777777777777777777777777777776654433332211 22222344566777
Q ss_pred HHHHHHHHH
Q 000940 725 IQNELEELV 733 (1216)
Q Consensus 725 iQ~kL~eLE 733 (1216)
+..++.++|
T Consensus 171 ~e~ki~~~e 179 (219)
T TIGR02977 171 YERRVDELE 179 (219)
T ss_pred HHHHHHHHH
Confidence 777777666
No 183
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.73 E-value=0.085 Score=57.07 Aligned_cols=92 Identities=17% Similarity=0.259 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 000940 616 EELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEE-KYKQSGDVASKLTLEEATFRD 694 (1216)
Q Consensus 616 ~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE-~~kQIsELqsqIA~lEaeLqD 694 (1216)
++|-.-+..+.++|..|+.++.............|....+++-..+.++..|++-.+. ...+..+|+++|..++..+++
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~ 136 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQE 136 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Confidence 3444445777777777877777666666666677777777777777777766554332 124455555555556555555
Q ss_pred HHHHHHHHHHHHH
Q 000940 695 IQEKKMELYQAIL 707 (1216)
Q Consensus 695 iQ~Q~~eLqaALa 707 (1216)
...++..|+..+.
T Consensus 137 ~~~ki~~Lek~le 149 (194)
T PF15619_consen 137 KEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 184
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.73 E-value=0.07 Score=54.72 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 630 QFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKM 709 (1216)
Q Consensus 630 E~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~l 709 (1216)
+.+..++..+.....++...+..+..+++.+++++..++.+. ..|+.++..++..++..+.++..+...++..
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~-------~~l~~~~~~~~~~~k~~kee~~klk~~~~~~ 127 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKE-------RQLQKQLKSLEAKLKQEKEELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444443333333333344444444444444443 3334444444444444444444444444443
Q ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHH
Q 000940 710 EGESGDGTLQQHADHIQNELEELVKILN 737 (1216)
Q Consensus 710 E~r~eda~LQeRlk~iQ~kL~eLEKaL~ 737 (1216)
..++.++ ++.-..+|+.|.+.|+
T Consensus 128 ~tq~~~e-----~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 128 KTQYEHE-----LRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHhc
Confidence 3333333 5666666666665553
No 185
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.72 E-value=0.036 Score=70.45 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=32.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000940 597 EQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDN 648 (1216)
Q Consensus 597 ee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~ed 648 (1216)
-++.+..-++|.+|--..+.+++.+++.+..+++.++...++....+.|...
T Consensus 182 le~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~ 233 (1195)
T KOG4643|consen 182 LEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADR 233 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444555566666644556666777777777777777766666665555543
No 186
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.72 E-value=0.08 Score=64.62 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=13.8
Q ss_pred HHHHHHHHhhCc--cc-CcccccccccC
Q 000940 734 KILNDRCKQYGL--RA-KPTLLVELPFG 758 (1216)
Q Consensus 734 KaL~earkq~GL--~a-K~~~~vElp~g 758 (1216)
+.+..+.|+|.- .+ .-...|.||--
T Consensus 186 ~i~~~aiqr~a~~~~~e~~~~~v~lp~d 213 (514)
T TIGR03319 186 EILATAIQRYAGDHVAETTVSVVNLPND 213 (514)
T ss_pred HHHHHHHHhccchhhhhheeeeEEcCCh
Confidence 445566666553 22 33358888863
No 187
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.69 E-value=0.06 Score=59.86 Aligned_cols=29 Identities=10% Similarity=-0.015 Sum_probs=15.5
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 656 RVSGDKREVELLAKKYEEKYKQSGDVASK 684 (1216)
Q Consensus 656 Evs~lKrEiE~Lr~kYEE~~kQIsELqsq 684 (1216)
+++.|++++-.++..+|++++-|.+|+..
T Consensus 92 q~s~Leddlsqt~aikeql~kyiReLEQa 120 (333)
T KOG1853|consen 92 QESQLEDDLSQTHAIKEQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555555555555555555544
No 188
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.67 E-value=0.048 Score=66.83 Aligned_cols=67 Identities=10% Similarity=0.247 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 676 KQSGDVASKLTLEEA-------TFRDIQEKKMELYQAILKMEGES-GDGTLQQHADHIQNELEELVKILNDRCKQ 742 (1216)
Q Consensus 676 kQIsELqsqIA~lEa-------eLqDiQ~Q~~eLqaALa~lE~r~-eda~LQeRlk~iQ~kL~eLEKaL~earkq 742 (1216)
..+.+|+++|..++. .+.++...+.++++.|..++... .-+.|++++.+++.+|.++-+.|++.|++
T Consensus 301 ~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555543 67777778888888888877443 34677888888888877776666666664
No 189
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.16 Score=63.61 Aligned_cols=73 Identities=21% Similarity=0.207 Sum_probs=35.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 638 ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 638 EL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
.|..+...|......++.++..+..-++.+..+.-+..+.+..|+.++...++.|.+++.++.++..+|..+.
T Consensus 528 ~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~ 600 (698)
T KOG0978|consen 528 KLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEK 600 (698)
T ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333334444555555555556677777777776666666633
No 190
>PRK00106 hypothetical protein; Provisional
Probab=96.62 E-value=0.1 Score=63.90 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=13.4
Q ss_pred HHHHHHHhhCcc--c-CcccccccccC
Q 000940 735 ILNDRCKQYGLR--A-KPTLLVELPFG 758 (1216)
Q Consensus 735 aL~earkq~GL~--a-K~~~~vElp~g 758 (1216)
.+..+.|+|.-. + +-...|.||--
T Consensus 208 ii~~aiqr~a~~~~~e~tvs~v~lp~d 234 (535)
T PRK00106 208 LLAQAMQRLAGEYVTEQTITTVHLPDD 234 (535)
T ss_pred HHHHHHHHhcchhhhhheeeeEEcCCh
Confidence 355566655532 2 33458888863
No 191
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.043 Score=67.04 Aligned_cols=75 Identities=17% Similarity=0.341 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHhhCccc
Q 000940 676 KQSGDVASKLTLEEATFRDIQEKKMELYQAILKME-------GESGDGTLQQHADHIQNELEEL-VKILNDRCKQYGLRA 747 (1216)
Q Consensus 676 kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE-------~r~eda~LQeRlk~iQ~kL~eL-EKaL~earkq~GL~a 747 (1216)
+++..+++.|..||-+|+..+.+..+|+..|..++ .+.... + ..|+.| ..++..++..||++.
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~p-----v----k~ve~~t~~~Ie~~e~~~gik~ 544 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTP-----V----KVVEKLTLEAIEEAEEEYGIKE 544 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcc-----e----ehhhhhhHHHHHhHHHhhcccc
Confidence 44555555555555555555555555555555432 111111 1 233444 255677788899987
Q ss_pred CcccccccccCc
Q 000940 748 KPTLLVELPFGW 759 (1216)
Q Consensus 748 K~~~~vElp~g~ 759 (1216)
=-..+|+-|-|=
T Consensus 545 GDvi~v~~~sG~ 556 (652)
T COG2433 545 GDVILVEDPSGG 556 (652)
T ss_pred CcEEEEEcCCCc
Confidence 777788888763
No 192
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.57 E-value=0.081 Score=65.91 Aligned_cols=84 Identities=17% Similarity=0.242 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCC---CCccHH-HHHHHHHHHHH----------
Q 000940 667 LAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME--GES---GDGTLQ-QHADHIQNELE---------- 730 (1216)
Q Consensus 667 Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE--~r~---eda~LQ-eRlk~iQ~kL~---------- 730 (1216)
|..+|+.+...+.+|..+...-.+++.+++.|+++|-..|..-+ -.. ....|- ++|++++.+|.
T Consensus 101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rl 180 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRL 180 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444445555555555555555554310 000 001111 33333333333
Q ss_pred ----HHHHHHHHHHHhhCcccCcc
Q 000940 731 ----ELVKILNDRCKQYGLRAKPT 750 (1216)
Q Consensus 731 ----eLEKaL~earkq~GL~aK~~ 750 (1216)
+++.++...|..+|+.+..+
T Consensus 181 ekv~~~~~~I~~l~~~Lg~~~~~~ 204 (660)
T KOG4302|consen 181 EKVLELKEEIKSLCSVLGLDFSMT 204 (660)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccc
Confidence 44577788889999877644
No 193
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.56 E-value=0.073 Score=67.07 Aligned_cols=69 Identities=10% Similarity=0.133 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 618 LEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 686 (1216)
Q Consensus 618 LeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA 686 (1216)
|+.+-++|++-+-.+|-...+-.+..+++..+|.....|+..+++..|.|..++++...+|.+|++++-
T Consensus 373 lEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 373 LEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333445667777788888888888888888888888888888888888763
No 194
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.53 E-value=0.12 Score=64.49 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHH
Q 000940 635 KMQELILYKSRCDNRLNEITERVSGDKREVELL 667 (1216)
Q Consensus 635 QmQEL~m~kqR~edeLnei~eEvs~lKrEiE~L 667 (1216)
+|.+|..++.++++||....+.|+.+++|++.|
T Consensus 271 ~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~l 303 (1265)
T KOG0976|consen 271 KMRQLKAKNSVLGDELSQKEELVKELQEELDTL 303 (1265)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 555677777777777777777777666666654
No 195
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.53 E-value=0.31 Score=51.40 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=35.6
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000940 657 VSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGES 713 (1216)
Q Consensus 657 vs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~ 713 (1216)
++..|..+..+..++..+..+|.+.+..++.++.+|..++.++..+...+.++..+.
T Consensus 79 L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~ 135 (177)
T PF13870_consen 79 LTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444455555555566666666666777777777777777777777776333
No 196
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.53 E-value=0.074 Score=65.47 Aligned_cols=131 Identities=15% Similarity=0.085 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQ----ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK-- 684 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQ----EL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsq-- 684 (1216)
|.+.|.+|+.+++.+-.+.+.+|++|. +|.....+ |+|.+..+.|..+-.|=|.|-++.-.....|+.|..+
T Consensus 407 ~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~--DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~k 484 (961)
T KOG4673|consen 407 YHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK--DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIK 484 (961)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 778888888888888877777777766 33333333 5566666666666666555533333333333333333
Q ss_pred -------------------HHHHHHHHHH-------HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 000940 685 -------------------LTLEEATFRD-------IQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILND 738 (1216)
Q Consensus 685 -------------------IA~lEaeLqD-------iQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~e 738 (1216)
.+.++.-|++ .++-+..+++.+.. +...++.++.++.+++.++--++.++.+
T Consensus 485 e~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~r--q~~~~~~sr~~~~~le~~~~a~qat~d~ 562 (961)
T KOG4673|consen 485 EAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTR--QKDYYSNSRALAAALEAQALAEQATNDE 562 (961)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHhhhh
Confidence 2222211111 11122222222222 3334477788888888888888888888
Q ss_pred HHHhhCc
Q 000940 739 RCKQYGL 745 (1216)
Q Consensus 739 arkq~GL 745 (1216)
+++-+.+
T Consensus 563 a~~Dlqk 569 (961)
T KOG4673|consen 563 ARSDLQK 569 (961)
T ss_pred hhhhHHH
Confidence 8875554
No 197
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.52 E-value=0.074 Score=59.79 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH------
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK------ 684 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsq------ 684 (1216)
+-+||.||+.++++|+.+-..-+-||.-|....+.-.....+-+.+.+.||||.+.|-..++.+.+...-|..-
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence 34788899999988887766555555534333332233345567778899999999877777766555444433
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Q 000940 685 -LTLEEATFRDIQEKKMELYQAIL 707 (1216)
Q Consensus 685 -IA~lEaeLqDiQ~Q~~eLqaALa 707 (1216)
+.-+|++|...+.+++.|++.|.
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqelk 119 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQELK 119 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544443
No 198
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.52 E-value=0.22 Score=56.92 Aligned_cols=68 Identities=15% Similarity=0.180 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHH
Q 000940 605 LKEATEADKKVEELEKEI----LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYE 672 (1216)
Q Consensus 605 rqEAeE~dkKL~ELeaEi----~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYE 672 (1216)
++|++-+..|..+|+..+ ..+.+-|-.|..|+..|...+.++--+|..-+.-..+|..|||..+.++.
T Consensus 30 ~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLa 101 (305)
T PF14915_consen 30 LEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLA 101 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345554555555565554 23333444555566666655555555555555555566666665554443
No 199
>PF13514 AAA_27: AAA domain
Probab=96.49 E-value=0.1 Score=68.71 Aligned_cols=61 Identities=28% Similarity=0.435 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Q 000940 672 EEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 732 (1216)
Q Consensus 672 EE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eL 732 (1216)
+++..++.+|+..|..++.+++.+..++.+++..|..+++...-+.|.+++..+..+|.++
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~ 952 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEEL 952 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 3344677788888888888889999999999999998887665566666666666666654
No 200
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.48 E-value=0.13 Score=55.97 Aligned_cols=90 Identities=16% Similarity=0.227 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 692 (1216)
Q Consensus 613 kKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeL 692 (1216)
.+|.|.++++..--.+|-.|+.++.++.......+.++..+...+..-..|++..+.++.....++.-|..+|..+|.++
T Consensus 17 qQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El 96 (202)
T PF06818_consen 17 QQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAEL 96 (202)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHH
Confidence 44444444444333444445555444444444434434444444444444555455555555555555666666666666
Q ss_pred HHHHHHHHHH
Q 000940 693 RDIQEKKMEL 702 (1216)
Q Consensus 693 qDiQ~Q~~eL 702 (1216)
+.++..+..+
T Consensus 97 ~~Lr~~l~~~ 106 (202)
T PF06818_consen 97 AELREELACA 106 (202)
T ss_pred HHHHHHHHhh
Confidence 6666666654
No 201
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.48 E-value=0.18 Score=65.03 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Q 000940 687 LEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 732 (1216)
Q Consensus 687 ~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eL 732 (1216)
+.|..+..+|++++.+.+-|++--.+..++ ++|+++++.+-++|
T Consensus 1658 ~a~q~~~~lq~~~~~~~~l~~~r~~g~~~a--r~rAe~L~~eA~~L 1701 (1758)
T KOG0994|consen 1658 SAEQGLEILQKYYELVDRLLEKRMEGSQAA--RERAEQLRTEAEKL 1701 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhH--HHHHHHHHHHHHHH
Confidence 345566677777766555555433555555 66777666555555
No 202
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.47 E-value=0.14 Score=61.16 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH---HHHhhCcc
Q 000940 717 TLQQHADHIQNELEELVKILND---RCKQYGLR 746 (1216)
Q Consensus 717 ~LQeRlk~iQ~kL~eLEKaL~e---arkq~GL~ 746 (1216)
..++|-..||.-++.|||.+.+ .++..|++
T Consensus 397 ~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~ 429 (622)
T COG5185 397 SVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRS 429 (622)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455566777777788776654 45566665
No 203
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=96.46 E-value=0.44 Score=52.81 Aligned_cols=116 Identities=14% Similarity=0.163 Sum_probs=57.5
Q ss_pred HHhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHhcHHHHHHH
Q 000940 589 LMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQE-LILYKSRCDNRLNEITERVSGDKREVELL 667 (1216)
Q Consensus 589 lL~ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQE-L~m~kqR~edeLnei~eEvs~lKrEiE~L 667 (1216)
+|.+...+-+..+.+-++.+..+-.....++.++.+++.+++-|..+.+. |..-+ ++--++..++++.+...++.+
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~---E~LAr~al~~~~~le~~~~~~ 104 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN---EDLAREALEEKQSLEDLAKAL 104 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333333333344556666666666655554432 22111 121244455555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 668 AKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1216)
Q Consensus 668 r~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa 707 (1216)
++.|.+...++..|..+|..||..|.+++.++..|.+...
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 105 EAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555555555555555555555555555544443
No 204
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.45 E-value=0.15 Score=62.38 Aligned_cols=7 Identities=0% Similarity=0.093 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 000940 628 KIQFCST 634 (1216)
Q Consensus 628 EIE~lrt 634 (1216)
.++.|+.
T Consensus 310 ~vesL~~ 316 (522)
T PF05701_consen 310 SVESLRS 316 (522)
T ss_pred HHHHHHH
Confidence 3333333
No 205
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=96.45 E-value=0.063 Score=62.87 Aligned_cols=103 Identities=13% Similarity=0.205 Sum_probs=50.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 000940 596 EEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY 675 (1216)
Q Consensus 596 Eee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~ 675 (1216)
+.+..+.+.++=...+.+.+.+++.++.++.+++...--+++-.+.+.+ +.|..+..+.+..++++..++.+|.+..
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~~~~~ls~~~~~y~~~s 293 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRSAQDELSEVQEKYKQAS 293 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344333333334455555555566655555544444444444443 2345555555555555555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 676 KQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 676 kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~ 708 (1216)
.-|.++.+ +|.+|.++++++++.+++
T Consensus 294 ~~V~~~t~-------~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 294 EGVSERTR-------ELAEISEELEQVKQEMEE 319 (359)
T ss_pred hHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 44444444 444555555555555544
No 206
>PRK01156 chromosome segregation protein; Provisional
Probab=96.44 E-value=0.084 Score=67.71 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 000940 718 LQQHADHIQNEL 729 (1216)
Q Consensus 718 LQeRlk~iQ~kL 729 (1216)
|++++..++..+
T Consensus 714 l~eel~~~~~~~ 725 (895)
T PRK01156 714 LSDRINDINETL 725 (895)
T ss_pred HHHHHHHHHHHH
Confidence 333343333333
No 207
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=96.44 E-value=0.17 Score=57.03 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 607 EATEADKKVEELEKEILTSREKIQFCST 634 (1216)
Q Consensus 607 EAeE~dkKL~ELeaEi~~lrqEIE~lrt 634 (1216)
+...+++++.+|.++|.+.++++.+|.+
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~el~~L~T 109 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEELNFLST 109 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445778889999999999999988887
No 208
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.43 E-value=0.26 Score=61.75 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=11.9
Q ss_pred cCcccccchhccchhcccc
Q 000940 761 PGIQEGTADWDEDWDKLED 779 (1216)
Q Consensus 761 ~~~qe~a~~w~edw~~~~d 779 (1216)
..|||.-++.-+.-.+|..
T Consensus 504 EeiQethldyR~els~lA~ 522 (1265)
T KOG0976|consen 504 EEIQETHLDYRSELSELAH 522 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4577777776666666643
No 209
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=96.43 E-value=0.0093 Score=65.08 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHH---cCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHHhc
Q 000940 438 VQKYTKVFVQVDIDRDGKITGEQAYNLFL---SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYRE 507 (1216)
Q Consensus 438 k~ey~eaF~~fDkDgDG~ISgdELr~~fl---gs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~~~l~ 507 (1216)
...+...|..+|+|+.|+|+.+||..+|. ......+.++-|+.+.|.+++|+|++.||......|...++
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~ 128 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRN 128 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999995 35788999999999999999999999999988888887764
No 210
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.42 E-value=0.0031 Score=48.49 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHH
Q 000940 440 KYTKVFVQVDIDRDGKITGEQAYNLFL 466 (1216)
Q Consensus 440 ey~eaF~~fDkDgDG~ISgdELr~~fl 466 (1216)
+++++|+.+|+|+||+|+.+|++.+|.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 478999999999999999999999884
No 211
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.36 E-value=0.13 Score=59.33 Aligned_cols=135 Identities=16% Similarity=0.093 Sum_probs=74.5
Q ss_pred hhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHH
Q 000940 591 DQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKK 670 (1216)
Q Consensus 591 ~ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~k 670 (1216)
.++-.+.++....-..|.+++.+++.|++-++.-+|+++..++.....+... ... .+...+=.++|.++.+
T Consensus 71 a~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~-----~~~----~ere~lV~qLEk~~~q 141 (319)
T PF09789_consen 71 AQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGAR-----HFP----HEREDLVEQLEKLREQ 141 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccc-----ccc----hHHHHHHHHHHHHHHH
Confidence 3344454444443333555666666666666666666555544433221110 000 2222333344444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------CCccHHHHHHHHHHHHHHHHH
Q 000940 671 YEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGES------------GDGTLQQHADHIQNELEELVK 734 (1216)
Q Consensus 671 YEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~------------eda~LQeRlk~iQ~kL~eLEK 734 (1216)
+++++..+..+-...+++..+..--+.+...|..+|.-+-++. ||-.|++||.++|.+.+-+..
T Consensus 142 ~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~ 217 (319)
T PF09789_consen 142 IEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQ 217 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444444444455555666666777777777777666443 346799999999988886643
No 212
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.35 E-value=0.45 Score=52.17 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=11.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 717 TLQQHADHIQNELEELVKILNDRCKQ 742 (1216)
Q Consensus 717 ~LQeRlk~iQ~kL~eLEKaL~earkq 742 (1216)
+|++.|++-..+.+||.+.+-+.+-+
T Consensus 179 SLe~~LeQK~kEn~ELtkICDeLI~k 204 (207)
T PF05010_consen 179 SLEESLEQKTKENEELTKICDELISK 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 213
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=0.092 Score=66.81 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 000940 635 KMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY-------KQSGDVASKLTL-------EEATFRDIQEKKM 700 (1216)
Q Consensus 635 QmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~-------kQIsELqsqIA~-------lEaeLqDiQ~Q~~ 700 (1216)
+++..+....+..-++.++...+..++.+.|.|+.++.+.. -++++|+.+|.. +...|+.++.++.
T Consensus 259 ~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~ 338 (1200)
T KOG0964|consen 259 ALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIE 338 (1200)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 33334444444444455555555555555555544433332 345666666543 3568888888999
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 000940 701 ELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGL 745 (1216)
Q Consensus 701 eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~earkq~GL 745 (1216)
+-++.|.+++-.| +.|+++-.+...+|..|++.+++...+.|=
T Consensus 339 e~~~EL~~I~Pky--~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr 381 (1200)
T KOG0964|consen 339 EKKDELSKIEPKY--NSLVDEEKRLKKRLAKLEQKQRDLLAKQGR 381 (1200)
T ss_pred HHHHHHHHhhhHH--HHHHhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999888 677888888888888888877777776664
No 214
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.18 Score=63.33 Aligned_cols=11 Identities=45% Similarity=0.616 Sum_probs=8.0
Q ss_pred eeccCCCCCCC
Q 000940 317 VVSGNGFSSDS 327 (1216)
Q Consensus 317 ~~~gng~~S~~ 327 (1216)
||.||--+.+.
T Consensus 344 vVRgn~~nQ~~ 354 (970)
T KOG0946|consen 344 VVRGNARNQDE 354 (970)
T ss_pred HHHhchHHHHH
Confidence 78888876644
No 215
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.33 E-value=0.32 Score=55.56 Aligned_cols=117 Identities=11% Similarity=0.126 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 622 ILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKME 701 (1216)
Q Consensus 622 i~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~e 701 (1216)
+.++++.-+.|..|+.+.+...+.++++|..+...+..----+|.++..+.+.+-|+.+++.+.+..++.+...-.+...
T Consensus 139 ~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes 218 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQES 218 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45555666667777777777777777777777666665555667777788888888888888888887777777777777
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 702 LYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRC 740 (1216)
Q Consensus 702 LqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~ear 740 (1216)
|+.-|..++..+ ..|++.|.+++++-+--||+...+-
T Consensus 219 ~eERL~QlqsEN--~LLrQQLddA~~K~~~kek~ViniQ 255 (305)
T PF14915_consen 219 LEERLSQLQSEN--MLLRQQLDDAHNKADNKEKTVINIQ 255 (305)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 777777755444 7777777777766665555444433
No 216
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.32 E-value=0.18 Score=59.36 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=22.2
Q ss_pred HhcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 658 SGDKREVELLAKKYEEKY-KQSGDVASKLTLEEATFRDIQEKK 699 (1216)
Q Consensus 658 s~lKrEiE~Lr~kYEE~~-kQIsELqsqIA~lEaeLqDiQ~Q~ 699 (1216)
.+||+|.=.|+..+|+++ .-+..|=.+|.-||.+-+-+|+++
T Consensus 182 eQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566776666666666554 222444444444554444444444
No 217
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.31 E-value=0.25 Score=51.25 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 614 KVEELEKEILTSREKIQFCSTKMQ 637 (1216)
Q Consensus 614 KL~ELeaEi~~lrqEIE~lrtQmQ 637 (1216)
++.+.+.+-+.+.+.|..+.+.++
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe 34 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELE 34 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 218
>PRK01156 chromosome segregation protein; Provisional
Probab=96.30 E-value=0.3 Score=62.89 Aligned_cols=18 Identities=6% Similarity=0.063 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000940 686 TLEEATFRDIQEKKMELY 703 (1216)
Q Consensus 686 A~lEaeLqDiQ~Q~~eLq 703 (1216)
..++..|..+.+++..++
T Consensus 308 ~~l~~~l~~l~~~l~~~e 325 (895)
T PRK01156 308 ENKKQILSNIDAEINKYH 325 (895)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 219
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.11 Score=51.58 Aligned_cols=97 Identities=20% Similarity=0.167 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH------------hcHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS------------GDKREVELLAKKYEEKYKQS 678 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs------------~lKrEiE~Lr~kYEE~~kQI 678 (1216)
+++|+.++-..|++++.+++.|-...|.|.++.++...-|+++. .+. =.|.++++.++-.. +-|
T Consensus 3 ~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eld-lle~d~~VYKliGpvLvkqel~EAr~nV~---kRl 78 (120)
T KOG3478|consen 3 LQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELD-LLEEDSNVYKLIGPVLVKQELEEARTNVG---KRL 78 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HhcccchHHHHhcchhhHHHHHHHHhhHH---HHH
Confidence 45778888888888888888888888877777665544333321 111 12334443333222 666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000940 679 GDVASKLTLEEATFRDIQEKKMELYQAILKMEG 711 (1216)
Q Consensus 679 sELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~ 711 (1216)
.=+...|.++|.+|+|+++++..+..++.++.+
T Consensus 79 efI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~ 111 (120)
T KOG3478|consen 79 EFISKEIKRLENQIRDSQEEFEKQREAVIKLQQ 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888888888888888888887653
No 220
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.28 E-value=0.19 Score=64.44 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000940 613 KKVEELEKEILTSREKIQFCST 634 (1216)
Q Consensus 613 kKL~ELeaEi~~lrqEIE~lrt 634 (1216)
.+++.|+.+++.+..++|.++.
T Consensus 202 ~~l~~L~~~~~~l~kdVE~~re 223 (1072)
T KOG0979|consen 202 EKLNRLEDEIDKLEKDVERVRE 223 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777666666664433
No 221
>PRK11281 hypothetical protein; Provisional
Probab=96.28 E-value=0.038 Score=72.48 Aligned_cols=51 Identities=6% Similarity=0.021 Sum_probs=23.9
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 658 SGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 658 s~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~ 708 (1216)
.+...++++++..+.+..+++..++.+.++...++..++.+++++++.|..
T Consensus 131 ~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 131 AQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333333444444444444444444444444445555555555555555544
No 222
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.28 E-value=0.004 Score=47.72 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHH
Q 000940 440 KYTKVFVQVDIDRDGKITGEQAYNLFL 466 (1216)
Q Consensus 440 ey~eaF~~fDkDgDG~ISgdELr~~fl 466 (1216)
+|+++|+.+|+|++|+|+.+|++.+|.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578889999999999999999888875
No 223
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.27 E-value=0.099 Score=55.05 Aligned_cols=82 Identities=21% Similarity=0.248 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 661 KREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRC 740 (1216)
Q Consensus 661 KrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~ear 740 (1216)
..|+..|+..|......++-+.+++..+..++..++.++...+..+.+ +.++|..+..+.+.|.+...+.+
T Consensus 62 n~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~---------~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 62 NKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAK---------LREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444443 55667777777788888888888
Q ss_pred HhhCcccCccc
Q 000940 741 KQYGLRAKPTL 751 (1216)
Q Consensus 741 kq~GL~aK~~~ 751 (1216)
++.|+...|..
T Consensus 133 ~~~~~~~~P~l 143 (177)
T PF13870_consen 133 QQGGLLGVPAL 143 (177)
T ss_pred HhcCCCCCcHH
Confidence 89998766653
No 224
>PRK10869 recombination and repair protein; Provisional
Probab=96.25 E-value=0.15 Score=62.74 Aligned_cols=54 Identities=11% Similarity=0.218 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 000940 691 TFRDIQEKKMELYQAILKMEGESG-DGTLQQHADHIQNELEELVKILNDRCKQYG 744 (1216)
Q Consensus 691 eLqDiQ~Q~~eLqaALa~lE~r~e-da~LQeRlk~iQ~kL~eLEKaL~earkq~G 744 (1216)
.+.++-+..+++++.|..+++..+ -+.|++++..+..+|.++-+.|+++|++..
T Consensus 318 ~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA 372 (553)
T PRK10869 318 SPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYA 372 (553)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666677777777764443 366777777777777777667776666543
No 225
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.23 E-value=0.0093 Score=70.29 Aligned_cols=55 Identities=27% Similarity=0.348 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHH
Q 000940 9 SDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVT 74 (1216)
Q Consensus 9 ~~~Y~~vF~~lD~DgDGkISg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LVa 74 (1216)
..+++.+|+.+|.|+||+|+.+|+.. +..+|+.+|.|+||.|+++||..+|+-+.
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 56788999999999999999999842 57899999999999999999999887653
No 226
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.23 E-value=0.27 Score=60.67 Aligned_cols=125 Identities=20% Similarity=0.243 Sum_probs=80.1
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000940 613 KKVEELEKEI-----LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK--- 684 (1216)
Q Consensus 613 kKL~ELeaEi-----~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsq--- 684 (1216)
..+.+++..+ .+-++.+...+.+|.++.....+..++|+++.+.=.+.+.+++.|+.+|.++.+++-+.+.+
T Consensus 82 ~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~ 161 (560)
T PF06160_consen 82 EQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGP 161 (560)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Confidence 4444444443 45556666677777777778888888888887777788999999999999888888776654
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 685 -LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 741 (1216)
Q Consensus 685 -IA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~eark 741 (1216)
+..+|..|.++..+..+..+-... |.+..| ++-+..|+.++.+|+..+.+.=+
T Consensus 162 a~~~Le~~L~~ie~~F~~f~~lt~~--GD~~~A--~eil~~l~~~~~~l~~~~e~IP~ 215 (560)
T PF06160_consen 162 AIEELEKQLENIEEEFSEFEELTEN--GDYLEA--REILEKLKEETDELEEIMEDIPK 215 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHH--HHHHHHHHHHHHHHHHHHHHhHH
Confidence 455566666666665544443332 333223 55566666666666555444433
No 227
>PRK10698 phage shock protein PspA; Provisional
Probab=96.23 E-value=0.34 Score=53.39 Aligned_cols=46 Identities=7% Similarity=0.025 Sum_probs=23.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQ 704 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqa 704 (1216)
.....++.|+.+|+....++..|+.+|..|+..|++++.+...|-+
T Consensus 96 ~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~a 141 (222)
T PRK10698 96 KLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALML 141 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555555555444433
No 228
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.22 E-value=0.098 Score=63.70 Aligned_cols=98 Identities=23% Similarity=0.252 Sum_probs=49.4
Q ss_pred hhhHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHHhhhhHHHHHH
Q 000940 584 ELEKHLMDQLSKEEQESLNAKLKEATEADKKVEELEKEILT---SREKIQFCSTKMQELI-------LYKSRCDNRLNEI 653 (1216)
Q Consensus 584 ~ldd~lL~ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~---lrqEIE~lrtQmQEL~-------m~kqR~edeLnei 653 (1216)
+++++|...+........+ +++.++++..+|..+|.. ...+++.++.+...|+ .+.......-...
T Consensus 217 ~~~~Elk~~l~~~~~~i~~----~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~ 292 (581)
T KOG0995|consen 217 ELEDELKHRLEKYFTSIAN----EIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHM 292 (581)
T ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHH
Confidence 4566666666555443332 344444555555555431 1122334444333333 3333333333344
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 654 TERVSGDKREVELLAKKYEEKYKQSGDVASKL 685 (1216)
Q Consensus 654 ~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqI 685 (1216)
...++.++.|+++-+.++|.+++++.+|..+|
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666777776664
No 229
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=96.19 E-value=0.19 Score=49.88 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEa 690 (1216)
++....++++++..+...|+-++.-..+|..++ ..|+.-++.|+++-+...+-|.+|+++|.++..
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqk--------------d~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGELAKQK--------------DQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777776666555553222 224444444555555555556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 000940 691 TFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 691 eLqDiQ~Q~~eLqaALa~lE 710 (1216)
.|.+-+-.+.+|+..+.+.+
T Consensus 73 ~le~eK~ak~~l~~r~~k~~ 92 (107)
T PF09304_consen 73 NLEDEKQAKLELESRLLKAQ 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66654444445555555533
No 230
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.18 Score=60.99 Aligned_cols=129 Identities=18% Similarity=0.186 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEI-------LTSREKIQFCSTKMQEL-------ILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYK 676 (1216)
Q Consensus 611 ~dkKL~ELeaEi-------~~lrqEIE~lrtQmQEL-------~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~k 676 (1216)
|-.||-+|++++ .+-+++.+.+.+.-+++ ..+..|+.++|.+.+-+-+++=.+.-+|+.+-=.++|
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK 184 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK 184 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 344444555554 44444444444444433 3444455555555544444444444444433333456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH-HHHHH-HHHHHHHHHHhhCcc
Q 000940 677 QSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQ-NELEE-LVKILNDRCKQYGLR 746 (1216)
Q Consensus 677 QIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ-~kL~e-LEKaL~earkq~GL~ 746 (1216)
+|+.|...- -++.-++..+..|+..+.=|..+-+++ .||+.|- .+|+| |+-+.+|+-|++.|+
T Consensus 185 qVs~LR~sQ----VEyEglkheikRleEe~elln~q~ee~---~~Lk~IAekQlEEALeTlq~EReqk~alk 249 (772)
T KOG0999|consen 185 QVSNLRQSQ----VEYEGLKHEIKRLEEETELLNSQLEEA---IRLKEIAEKQLEEALETLQQEREQKNALK 249 (772)
T ss_pred HHHHHhhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 666665432 244445555555555554444333333 3566655 66774 455555555566554
No 231
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=96.16 E-value=0.14 Score=60.28 Aligned_cols=39 Identities=5% Similarity=0.134 Sum_probs=19.0
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 651 NEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE 689 (1216)
Q Consensus 651 nei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lE 689 (1216)
..+..++.+++.++..|+..|.+.+-++.+|+++|+.++
T Consensus 257 ~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~ 295 (444)
T TIGR03017 257 QNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLK 295 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 344455555555555555555444444444444444443
No 232
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.16 E-value=0.058 Score=59.72 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh-hCccc
Q 000940 689 EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQ-YGLRA 747 (1216)
Q Consensus 689 EaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~earkq-~GL~a 747 (1216)
..+|++|...|..|+..|..++... ...++.|.+...+|..|....++.|+. .||.-
T Consensus 52 ~eeLrqI~~DIn~lE~iIkqa~~er--~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~ 109 (230)
T PF10146_consen 52 VEELRQINQDINTLENIIKQAESER--NKRQEKIQRLYEEYKPLKDEINELRKEYLGLEP 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3344455555555555554444222 123444555566777777778888886 77653
No 233
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.15 E-value=0.28 Score=60.64 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=9.3
Q ss_pred CCCCCCccCHHHHHHH
Q 000940 483 DQDNDGMLSLKEFCTA 498 (1216)
Q Consensus 483 DiD~DGkLdfdEFvvA 498 (1216)
..+.||..+-.-|-+.
T Consensus 245 n~~~d~~~Ss~~FE~i 260 (961)
T KOG4673|consen 245 NENLDGRTSSKNFEVI 260 (961)
T ss_pred ccccccccccchhhhc
Confidence 4555666666666543
No 234
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.15 E-value=0.2 Score=59.71 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=14.0
Q ss_pred Ccc---CCCCCCCCcccccCC
Q 000940 932 SWG---TFDTHYDAESVWGFD 949 (1216)
Q Consensus 932 ~wg---~fd~~~d~~s~w~~~ 949 (1216)
.|| --||+.-.-||.|+|
T Consensus 350 GYG~vvIldhG~gy~slyg~~ 370 (420)
T COG4942 350 GYGLVVILDHGGGYHSLYGGN 370 (420)
T ss_pred cCceEEEEEcCCccEEEeccc
Confidence 367 568888888888888
No 235
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.14 E-value=0.3 Score=56.52 Aligned_cols=85 Identities=21% Similarity=0.250 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHH
Q 000940 648 NRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE-------------------ATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 648 deLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lE-------------------aeLqDiQ~Q~~eLqaALa~ 708 (1216)
.-|.+.+++...|+.|++.|++++.|.+..|.-|..+|+..+ .+|..++.|+++|+-.+..
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777889999999999999999999998888877652 2566666666666666654
Q ss_pred HhcCCCC-----ccHHHHHHHHHHHHHHH
Q 000940 709 MEGESGD-----GTLQQHADHIQNELEEL 732 (1216)
Q Consensus 709 lE~r~ed-----a~LQeRlk~iQ~kL~eL 732 (1216)
+.+..++ ...+.++.++|.+|..+
T Consensus 152 ~lDEkeEl~~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 152 LLDEKEELVTERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433322 23355555556555544
No 236
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.13 E-value=0.0072 Score=62.58 Aligned_cols=62 Identities=27% Similarity=0.285 Sum_probs=51.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHH---HcCCCCHHHHH----HHHHHhCCCCCCccCHHHHHHHHHHHHHH
Q 000940 441 YTKVFVQVDIDRDGKITGEQAYNLF---LSWRLPREVLK----QVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1216)
Q Consensus 441 y~eaF~~fDkDgDG~ISgdELr~~f---lgs~LpeeeL~----qIW~LaDiD~DGkLdfdEFvvAM~LI~~~ 505 (1216)
..-+|+.+|-|+|++|..++|...+ .+..|+.+++. +|++++|.|+||+|++.||- |+|-++
T Consensus 110 ~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe---~~i~ra 178 (189)
T KOG0038|consen 110 AKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFE---HVILRA 178 (189)
T ss_pred hhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHH---HHHHhC
Confidence 3446999999999999999999888 35789888765 56789999999999999998 666543
No 237
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.10 E-value=0.28 Score=66.13 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 000940 627 EKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY--------KQSGDVASKLTLEEATFRDIQEK 698 (1216)
Q Consensus 627 qEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~--------kQIsELqsqIA~lEaeLqDiQ~Q 698 (1216)
.+++.++.++.++.....++..++..+.+++..++++++.|+.++++++ +++.+|+.++..+..++.+...+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~ 355 (1353)
T TIGR02680 276 TQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQA 355 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444443 44444444444444333333333
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Q 000940 699 KMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGLRA 747 (1216)
Q Consensus 699 ~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~earkq~GL~a 747 (1216)
+.+-+..+.+++.+- ..+..|+.++...|++....+..+....|+..
T Consensus 356 ~~~a~~~~e~~~~~~--~~~~~r~~~~~~~l~~~~~el~~~a~~~~~~~ 402 (1353)
T TIGR02680 356 IREAESRLEEERRRL--DEEAGRLDDAERELRAAREQLARAAERAGLSP 402 (1353)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 333333333333222 22344555666666666666667777777755
No 238
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.09 E-value=0.23 Score=57.04 Aligned_cols=94 Identities=14% Similarity=0.131 Sum_probs=42.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000940 638 ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGT 717 (1216)
Q Consensus 638 EL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~ 717 (1216)
+.+.++..+.++|....++......||-.|..++-.+++.++++-..-..+...|...|.-..+|.+.|.+++++| +.
T Consensus 210 ~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY--~E 287 (306)
T PF04849_consen 210 EANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY--AE 287 (306)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 3333333333334444444444444444444443333333333332223333344444555555566666666666 33
Q ss_pred HHHHHHHHHHHHHHHH
Q 000940 718 LQQHADHIQNELEELV 733 (1216)
Q Consensus 718 LQeRlk~iQ~kL~eLE 733 (1216)
...-|.++|.+|..|.
T Consensus 288 ~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 288 CMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444555666665553
No 239
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.08 E-value=0.012 Score=69.13 Aligned_cols=68 Identities=24% Similarity=0.325 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHh------CCCCHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHH
Q 000940 9 SDLFEAYFRRADLDGDGQISGAEAVAFFQG------SNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVA 76 (1216)
Q Consensus 9 ~~~Y~~vF~~lD~DgDGkISg~Ea~~fL~~------SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValA 76 (1216)
+.-++.+|++.|.|..|.|+.+|++....- -.+..+.+.++-+..|-++||+|+..||..|.+||...
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~ 619 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRR 619 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcch
Confidence 456788999999999999999999876433 25899999999999999999999999999999999874
No 240
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=0.2 Score=64.56 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 607 EATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 685 (1216)
Q Consensus 607 EAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqI 685 (1216)
++.+++.++.-|+..+..++-+++..+..+.++....++.+++++++.-++..++++++..+..+.+++.++.+++.+|
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~i 755 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRI 755 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777777777777777777777777777888888888888888888999999999999999988888888774
No 241
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=96.08 E-value=0.23 Score=58.17 Aligned_cols=50 Identities=28% Similarity=0.459 Sum_probs=38.5
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 654 TERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELY 703 (1216)
Q Consensus 654 ~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLq 703 (1216)
.+++..++||+|-|-.+|-++.-++..|.+++...+..|++.|.+-++|.
T Consensus 420 leelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELn 469 (593)
T KOG4807|consen 420 LEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELN 469 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45666888899989888988888888888888777777777776654443
No 242
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.08 E-value=0.15 Score=60.59 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=14.6
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 000940 651 NEITERVSGDKREVELLAKKYEEKYKQSGDVA 682 (1216)
Q Consensus 651 nei~eEvs~lKrEiE~Lr~kYEE~~kQIsELq 682 (1216)
+.+.++.....+.++.|+.+++..++|+.+++
T Consensus 371 ~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 371 SDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555544444444444
No 243
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=96.06 E-value=0.13 Score=52.05 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000940 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDN 648 (1216)
Q Consensus 613 kKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~ed 648 (1216)
..+.++..+++.++++++.+..++.+|.....++..
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~ 41 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDT 41 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777777776666655443
No 244
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.03 E-value=0.2 Score=59.82 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000940 721 HADHIQNELEELVKILNDRCK 741 (1216)
Q Consensus 721 Rlk~iQ~kL~eLEKaL~eark 741 (1216)
.+.+++.+|.+|+..+.++..
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~ 257 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQV 257 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554444
No 245
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.02 E-value=0.42 Score=61.01 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=40.3
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCccHHHHHHHHHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME-GESGDGTLQQHADHIQNELEELVKILN 737 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE-~r~eda~LQeRlk~iQ~kL~eLEKaL~ 737 (1216)
.++-||+.|+-.|+-....|..|+.+|..++..|++--.++..+...|.. + +......+..+|..+..+.+.+.+.|.
T Consensus 375 ~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~lEea~~eker~~e~l~ 453 (775)
T PF10174_consen 375 RLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS-QADSSNEDEALETLEEALREKERLQERLE 453 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444455555555555555555544444444444443 2 222223445666666666666666666
Q ss_pred HHHH
Q 000940 738 DRCK 741 (1216)
Q Consensus 738 eark 741 (1216)
+.+.
T Consensus 454 e~r~ 457 (775)
T PF10174_consen 454 EQRE 457 (775)
T ss_pred HHHH
Confidence 5554
No 246
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.00 E-value=0.15 Score=63.41 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=6.6
Q ss_pred CCCcccCCCCC
Q 000940 129 PQNVSVRGPQG 139 (1216)
Q Consensus 129 ~q~~~~~g~~~ 139 (1216)
.+..|+||.=|
T Consensus 75 ~k~lGy~~dig 85 (594)
T PF05667_consen 75 CKELGYRGDIG 85 (594)
T ss_pred HHHcCCCCCCc
Confidence 45667777533
No 247
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.98 E-value=0.24 Score=55.29 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 612 DKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVAS 683 (1216)
Q Consensus 612 dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqs 683 (1216)
..++..++.++..+..+++.|..+++......+...+....+..+...|...|+.+...+.++..++..+..
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 356777777788888888888888887777777777777777777778888888887777777766665555
No 248
>PF13514 AAA_27: AAA domain
Probab=95.98 E-value=0.25 Score=65.22 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 000940 716 GTLQQHADHIQNELEELVKILNDRCKQYG 744 (1216)
Q Consensus 716 a~LQeRlk~iQ~kL~eLEKaL~earkq~G 744 (1216)
...+..+..++.++.+++..+.+.++++|
T Consensus 299 ~~~~~dl~~~~~e~~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 299 RKARQDLPRLEAELAELEAELRALLAQLG 327 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44456677777888888888888888888
No 249
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.97 E-value=0.085 Score=57.58 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=20.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEK 698 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q 698 (1216)
+++..+++|+.+++++..|+..++.++..+++++.++|..
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555544
No 250
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.97 E-value=0.046 Score=52.81 Aligned_cols=69 Identities=9% Similarity=0.167 Sum_probs=57.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHh-------CCCCHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhcC
Q 000940 10 DLFEAYFRRADLDGDGQISGAEAVAFFQG-------SNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSK 79 (1216)
Q Consensus 10 ~~Y~~vF~~lD~DgDGkISg~Ea~~fL~~-------SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G 79 (1216)
.....+|..+-.+ .+.++..|++.+|.+ ..-.+..|.+|+...|.|+||.|++.||+.-+.-+++|...
T Consensus 8 ~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ac~~ 83 (91)
T cd05024 8 EKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIACND 83 (91)
T ss_pred HHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 4567788888744 469999999999855 34578999999999999999999999999999888887653
No 251
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=95.88 E-value=0.017 Score=67.79 Aligned_cols=65 Identities=23% Similarity=0.478 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHH
Q 000940 437 EVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYL 501 (1216)
Q Consensus 437 Ek~ey~eaF~~fDkDgDG~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~L 501 (1216)
...++.++|..+|.++||.|...|+...| ++-+|..+++++|++-+|.++++.|+++||--.|.|
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 35688899999999999999999999999 678899999999999999999999999999765443
No 252
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.88 E-value=0.51 Score=53.39 Aligned_cols=102 Identities=10% Similarity=0.064 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 607 EATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 686 (1216)
Q Consensus 607 EAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA 686 (1216)
|...-+=+|..|++-+++-+++++..++++..|.+.++++-...+++.....++-++++.=+.++.-+..|++....+|.
T Consensus 33 E~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie 112 (307)
T PF10481_consen 33 ERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIE 112 (307)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333356777788888888999999999888888888877766777666667777777666666666778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000940 687 LEEATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 687 ~lEaeLqDiQ~Q~~eLqaALa~ 708 (1216)
.||.+|...+.+++..+.+...
T Consensus 113 ~Leqelkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 113 KLEQELKRCKSELERSQQAASS 134 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 8899999999988888877764
No 253
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.87 E-value=0.46 Score=61.66 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000940 719 QQHADHIQNELEELVKIL 736 (1216)
Q Consensus 719 QeRlk~iQ~kL~eLEKaL 736 (1216)
++-+.+++.+|.++.+.+
T Consensus 566 ~~~~~~~~~~l~~~~~~~ 583 (1041)
T KOG0243|consen 566 QEVIDDFQSQLSENLSTL 583 (1041)
T ss_pred HHHHHHHhhhhhHHHHHH
Confidence 455677776666554433
No 254
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=95.87 E-value=0.18 Score=49.55 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000940 615 VEELEKEILTSREKIQFCSTKMQELILYKSRCDN 648 (1216)
Q Consensus 615 L~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~ed 648 (1216)
+.++-.+++.++++++.+..+++.|.+..+++..
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~ 38 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEK 38 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777777766554
No 255
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.86 E-value=0.015 Score=75.62 Aligned_cols=68 Identities=21% Similarity=0.552 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCC-------HHHHHHHHHHhCCCCCCccCHHHHHHHH
Q 000940 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLP-------REVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (1216)
Q Consensus 432 ~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~f--lgs~Lp-------eeeL~qIW~LaDiD~DGkLdfdEFvvAM 499 (1216)
-++.+.+.+|.-+|+.||++++|.++..+++.+| +|..|| +.++..|++++|++.+|+|++.+|+..|
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 4789999999999999999999999999999999 566553 4589999999999999999999999744
No 256
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.85 E-value=0.32 Score=52.62 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 677 QSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 677 QIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
++..|+.+++.++.++..++.++.+|+.-|.+++
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 257
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.03 Score=65.81 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHc--CC-CCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHH
Q 000940 433 MTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLS--WR-LPREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 503 (1216)
Q Consensus 433 LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~flg--s~-LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~ 503 (1216)
+.++-..+++.+|+.||.+++|+|+.++|...|.. .. ...+-...|+..+|.|.||.+||.||..-|.--+
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E 81 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKE 81 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhH
Confidence 45566679999999999999999999999988843 33 5567778899999999999999999986444333
No 258
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=95.84 E-value=0.25 Score=56.72 Aligned_cols=26 Identities=8% Similarity=-0.026 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 680 DVASKLTLEEATFRDIQEKKMELYQA 705 (1216)
Q Consensus 680 ELqsqIA~lEaeLqDiQ~Q~~eLqaA 705 (1216)
+.+.++...+++++.++.++..++..
T Consensus 156 ~a~~~~~~a~~~l~~a~~~~~~~~~~ 181 (346)
T PRK10476 156 QARTAQRDAEVSLNQALLQAQAAAAA 181 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455554444444433
No 259
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.25 Score=62.10 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHH
Q 000940 631 FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYE 672 (1216)
Q Consensus 631 ~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYE 672 (1216)
.++.+..+|+..+..++.++.....+.++++++++.|+.++.
T Consensus 675 ~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 675 NLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333344444444444444455555555555555555444
No 260
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.82 E-value=1.1 Score=48.64 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=13.2
Q ss_pred HHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHH
Q 000940 595 KEEQESLNAKLKEATE----ADKKVEELEKEILTSR 626 (1216)
Q Consensus 595 ~Eee~~ln~~rqEAeE----~dkKL~ELeaEi~~lr 626 (1216)
.++-..+.....-+++ +...+.+|..++..++
T Consensus 21 ~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 21 ADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444334444 3333444444444333
No 261
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=95.82 E-value=0.14 Score=53.46 Aligned_cols=93 Identities=15% Similarity=0.208 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 000940 648 NRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL--TLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHI 725 (1216)
Q Consensus 648 deLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqI--A~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~i 725 (1216)
.+|..+..++..++.++..|+.++..+..+++.|.+.+ ..+...+..++.++..|++-|..++.....-+ .+.++.+
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs-~ee~~~~ 150 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVS-PEEKEKL 150 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-HHHHHHH
Confidence 35677777777777777777777777777777777775 45567888899999999999998886443322 5566667
Q ss_pred HHHHHHHHHHHHHHHH
Q 000940 726 QNELEELVKILNDRCK 741 (1216)
Q Consensus 726 Q~kL~eLEKaL~eark 741 (1216)
..++..+.+....|++
T Consensus 151 ~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 151 EKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7666666665555543
No 262
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.15 Score=62.68 Aligned_cols=30 Identities=23% Similarity=0.291 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 000940 716 GTLQQHADHIQNELEELVKILNDRCKQYGL 745 (1216)
Q Consensus 716 a~LQeRlk~iQ~kL~eLEKaL~earkq~GL 745 (1216)
..|+.+|.+-..++++|++.|.+.+|-+.|
T Consensus 484 ~~L~~~L~e~~~~ve~L~~~l~~l~k~~~l 513 (652)
T COG2433 484 ERLEKELEEKKKRVEELERKLAELRKMRKL 513 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777777778888999999999875553
No 263
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.80 E-value=0.44 Score=64.78 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=67.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhHHHHHHHHHHH-------hcHHHHH
Q 000940 597 EQESLNAKLKEATEADKKVEELEKEILTSREKIQFCST----KMQELILYKSRCDNRLNEITERVS-------GDKREVE 665 (1216)
Q Consensus 597 ee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrt----QmQEL~m~kqR~edeLnei~eEvs-------~lKrEiE 665 (1216)
.+..+....++++.+..+|.+|+.++.+++++++.-.. ++-.+......+.+++.++...++ .++..++
T Consensus 956 ~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~ 1035 (1822)
T KOG4674|consen 956 LEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLK 1035 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444555555555555555544442222 222344444444444444444333 3333333
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000940 666 L-------LAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGES 713 (1216)
Q Consensus 666 ~-------Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~ 713 (1216)
. .+.+|+....+.+++-+.|..++.++..++.++..|.......++.+
T Consensus 1036 ~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l 1090 (1822)
T KOG4674|consen 1036 TETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALL 1090 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 2 37778888888888888888898888888888888887777655443
No 264
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=95.79 E-value=0.12 Score=58.34 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHHHHHHH--HHHHh
Q 000940 691 TFRDIQEKKMELYQAILKMEGES--GDGTLQQHADHIQNELEELVKILN--DRCKQ 742 (1216)
Q Consensus 691 eLqDiQ~Q~~eLqaALa~lE~r~--eda~LQeRlk~iQ~kL~eLEKaL~--earkq 742 (1216)
+|+.++++|.+|++.|+-+...- -|.-+|+.-.+||-+=..||-.|+ |.+|.
T Consensus 118 ALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElAq~ 173 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELAQS 173 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHHHh
Confidence 45666666777777776655221 256789999999988888888887 44443
No 265
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=95.78 E-value=0.21 Score=57.40 Aligned_cols=42 Identities=19% Similarity=0.187 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH
Q 000940 692 FRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKI 735 (1216)
Q Consensus 692 LqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKa 735 (1216)
+.++.+++.++..+|++.+.+- ...+.++..+|..|..++..
T Consensus 129 ~~~~t~~la~~t~~L~~~~~~l--~q~~~k~~~~q~~l~~~~~~ 170 (301)
T PF06120_consen 129 QADATRKLAEATRELAVAQERL--EQMQSKASETQATLNDLTEQ 170 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666544333 22244455555555544433
No 266
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.3 Score=61.93 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 605 LKEATEADKKVEELEKEILTSREKIQFCSTK 635 (1216)
Q Consensus 605 rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQ 635 (1216)
.|+..+..+++.||+.+++.++++.+.|..+
T Consensus 619 mkd~~~~~q~~~EL~~q~~~L~ee~~af~~~ 649 (984)
T COG4717 619 MKDLKKLMQKKAELTHQVARLREEQAAFEER 649 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567889999999999999998865553
No 267
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.75 E-value=0.21 Score=55.43 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHH
Q 000940 629 IQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLA 668 (1216)
Q Consensus 629 IE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr 668 (1216)
|+-|+++|.+|...+.++.++|+.|.+.|..+...|..++
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~ 73 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAE 73 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555444444444443333
No 268
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=95.74 E-value=0.35 Score=54.77 Aligned_cols=95 Identities=23% Similarity=0.357 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 628 KIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1216)
Q Consensus 628 EIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa 707 (1216)
+++|||+++.|+...+...+. -.....++...+|.++..+.+++++ ...+...|.++++++.++.+..+-|.
T Consensus 167 kV~WLR~~L~Ei~Ea~e~~~~-~~~~e~eke~~~r~l~~~~~ELe~~-------~EeL~~~Eke~~e~~~~i~e~~~rl~ 238 (269)
T PF05278_consen 167 KVDWLRSKLEEILEAKEIYDQ-HETREEEKEEKDRKLELKKEELEEL-------EEELKQKEKEVKEIKERITEMKGRLG 238 (269)
T ss_pred chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999887655444322 2333334444555555555554433 34444455555555555555555555
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHH
Q 000940 708 KMEGESGDGTLQQHADHIQNELEEL 732 (1216)
Q Consensus 708 ~lE~r~eda~LQeRlk~iQ~kL~eL 732 (1216)
.++... +-|.+++..+..+.+..
T Consensus 239 ~l~~~~--~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 239 ELEMES--TRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHh
Confidence 555444 44556666666665543
No 269
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=95.73 E-value=0.19 Score=49.01 Aligned_cols=31 Identities=6% Similarity=0.005 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000940 618 LEKEILTSREKIQFCSTKMQELILYKSRCDN 648 (1216)
Q Consensus 618 LeaEi~~lrqEIE~lrtQmQEL~m~kqR~ed 648 (1216)
+..+++.++++++.+..+++.|....+++..
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~ 34 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKK 34 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666555
No 270
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.70 E-value=0.32 Score=62.53 Aligned_cols=57 Identities=30% Similarity=0.346 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELL 667 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~L 667 (1216)
+..++.+|+.++.+...++......+-+.........+.|+.+..++.+++.+++.|
T Consensus 274 i~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~l 330 (1072)
T KOG0979|consen 274 IEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESL 330 (1072)
T ss_pred hhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555444444443433333333444444444444444444433
No 271
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.69 E-value=0.25 Score=61.79 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSR-------CDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVAS 683 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR-------~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqs 683 (1216)
|..+|+++.....++.++|.-.+.++..|-..... .+..-..+++++..++..++.|+++|++..+|+.+|..
T Consensus 52 y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~ 131 (660)
T KOG4302|consen 52 YKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYH 131 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666655555555555555555554443322211 11122367788889999999999999999999999999
Q ss_pred HHHHHH
Q 000940 684 KLTLEE 689 (1216)
Q Consensus 684 qIA~lE 689 (1216)
+|+.+-
T Consensus 132 qie~l~ 137 (660)
T KOG4302|consen 132 QIEKLC 137 (660)
T ss_pred HHHHHH
Confidence 988773
No 272
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=95.69 E-value=0.7 Score=53.51 Aligned_cols=54 Identities=9% Similarity=0.068 Sum_probs=33.7
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 657 VSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 657 vs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
+..++.|-+.|+-+++....++.|-++.-+.|.-+|.+...-++.|.++.++.=
T Consensus 136 i~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf 189 (401)
T PF06785_consen 136 IRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATF 189 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344555555566666666666666666666666677777777777777766544
No 273
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.66 E-value=0.9 Score=58.59 Aligned_cols=63 Identities=13% Similarity=0.032 Sum_probs=42.0
Q ss_pred HHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 642 YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQ 704 (1216)
Q Consensus 642 ~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqa 704 (1216)
-.++...+|..+.+.+..+|+.++.....|+.+.++|.+|++.+-.+|.+-.++++||..|..
T Consensus 496 ~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 496 SLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333344445555555556666666666667666677777777777778888888888877765
No 274
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.66 E-value=1.1 Score=49.85 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=19.9
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa 707 (1216)
.++...+.|+..++.+.+++.+|+++|..++...+.+.--+.++-+.|.
T Consensus 67 ~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 67 NLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444444444444444443
No 275
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.65 E-value=0.25 Score=64.37 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=11.7
Q ss_pred HHHHHHHHhCCCCCCccC---HHHHH
Q 000940 474 VLKQVWDLSDQDNDGMLS---LKEFC 496 (1216)
Q Consensus 474 eL~qIW~LaDiD~DGkLd---fdEFv 496 (1216)
+.+.++...=.+.+-.|. +++|.
T Consensus 311 eakdLI~~ll~~~e~RLgrngiedik 336 (1317)
T KOG0612|consen 311 EAKDLIEALLCDREVRLGRNGIEDIK 336 (1317)
T ss_pred HHHHHHHHHhcChhhhcccccHHHHH
Confidence 344444444444444555 77775
No 276
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=95.65 E-value=0.51 Score=53.52 Aligned_cols=25 Identities=12% Similarity=0.132 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q 000940 720 QHADHIQNELEELVKILNDRCKQYG 744 (1216)
Q Consensus 720 eRlk~iQ~kL~eLEKaL~earkq~G 744 (1216)
..+..++.+|..++..+.++..++.
T Consensus 179 ~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 179 TDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666777777766666655443
No 277
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.60 E-value=0.77 Score=57.37 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=13.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH
Q 000940 716 GTLQQHADHIQNELEELVKILN 737 (1216)
Q Consensus 716 a~LQeRlk~iQ~kL~eLEKaL~ 737 (1216)
..||+.+.++|++|.+|++...
T Consensus 278 ~~LqeE~e~Lqskl~~~~~l~~ 299 (716)
T KOG4593|consen 278 GLLQEELEGLQSKLGRLEKLQS 299 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666544
No 278
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.60 E-value=0.93 Score=54.46 Aligned_cols=65 Identities=20% Similarity=0.155 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-cCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 677 QSGDVASKLTLEEATFRDIQEKKMELYQAIL-KME-GESGDGTLQQHADHIQNELEELVKILNDRCK 741 (1216)
Q Consensus 677 QIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa-~lE-~r~eda~LQeRlk~iQ~kL~eLEKaL~eark 741 (1216)
|+-++.+.|..-|.++..+|.-+.+|+.|.. +|+ =..|-....+++.-+|.++..-||..-+-||
T Consensus 447 qclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERq 513 (527)
T PF15066_consen 447 QCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQ 513 (527)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3334444444446666666666666665553 222 1122233344455555666555544444444
No 279
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=95.59 E-value=0.28 Score=62.05 Aligned_cols=126 Identities=13% Similarity=0.153 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Q 000940 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERV--SGDKREVELLAKKYEEKYKQSGDVASKLTLEE-------ATFR 693 (1216)
Q Consensus 623 ~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEv--s~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lE-------aeLq 693 (1216)
....+-++|+..|+.+|.......+.+|++-+++- -....+.+.+-.++.++..|+.+|+.+++.+. -+++
T Consensus 263 ~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~ 342 (726)
T PRK09841 263 AQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYR 342 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 33344455666666666666555555555544331 12233333333333444444444444433332 3566
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHHH---HHHHHHHHhhCcccC
Q 000940 694 DIQEKKMELYQAILKMEGES-GDGTLQQHADHIQNELEELV---KILNDRCKQYGLRAK 748 (1216)
Q Consensus 694 DiQ~Q~~eLqaALa~lE~r~-eda~LQeRlk~iQ~kL~eLE---KaL~earkq~GL~aK 748 (1216)
.++.|+++|++.+++++++- .....+.++.+++.+.+-.+ ..|-+++++..+..-
T Consensus 343 ~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a 401 (726)
T PRK09841 343 ALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKS 401 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66777777777777666322 33455666777776666443 444455555555543
No 280
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.58 E-value=0.21 Score=51.27 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=19.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAI 706 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaAL 706 (1216)
+++.+++.|...++.+..++.++++.++.++...+.++.++..++.++
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444333333334444444444444444444444443333333
No 281
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=0.015 Score=66.53 Aligned_cols=63 Identities=22% Similarity=0.390 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhC--CCCHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Q 000940 9 SDLFEAYFRRADLDGDGQISGAEAVAFFQGS--NLPKQVLAQVWSHADQRKAGFLNRAEFFNALK 71 (1216)
Q Consensus 9 ~~~Y~~vF~~lD~DgDGkISg~Ea~~fL~~S--gLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~ 71 (1216)
......+|.++|.++||.|+..|++.+++.+ ..-.....+-|...|.++||.|+.+||..+++
T Consensus 76 ~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 76 QERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTY 140 (325)
T ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhh
Confidence 4567889999999999999999999999887 46667777888899999999999999988765
No 282
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.55 E-value=0.89 Score=56.17 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000940 692 FRDIQEKKMELYQAILKMEGESG-DGTLQQHADHIQNELEELVKILNDRCKQY 743 (1216)
Q Consensus 692 LqDiQ~Q~~eLqaALa~lE~r~e-da~LQeRlk~iQ~kL~eLEKaL~earkq~ 743 (1216)
+.++-+...++++.|+.+++..+ ...|+++++.+..++.++=++|+..|+++
T Consensus 320 ~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~ 372 (557)
T COG0497 320 IEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKA 372 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555666554433 25566666666666666666666666654
No 283
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.55 E-value=0.6 Score=57.68 Aligned_cols=18 Identities=11% Similarity=0.553 Sum_probs=9.1
Q ss_pred chhcccccccchhhhhhhc
Q 000940 773 DWDKLEDEGFTFVKELTLE 791 (1216)
Q Consensus 773 dw~~~~d~gf~~~~~~t~~ 791 (1216)
||+++ -+..++.|.+.+-
T Consensus 345 DYeeI-K~ELsiLk~ief~ 362 (629)
T KOG0963|consen 345 DYEEI-KKELSILKAIEFG 362 (629)
T ss_pred cHHHH-HHHHHHHHHhhcC
Confidence 56665 4444555554443
No 284
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.53 E-value=0.37 Score=61.48 Aligned_cols=75 Identities=20% Similarity=0.206 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------ccH-HH-HHHHHHHHHHHHHHHHHHH
Q 000940 669 KKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD-------GTL-QQ-HADHIQNELEELVKILNDR 739 (1216)
Q Consensus 669 ~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~ed-------a~L-Qe-Rlk~iQ~kL~eLEKaL~ea 739 (1216)
.+.++++..|..|+..|.....--+++-.+|.+|+..|......... ..+ |+ .|--+-.+|.|=.|.+.-.
T Consensus 673 ~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sL 752 (769)
T PF05911_consen 673 AEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASL 752 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444333333444455666777777765522211 111 12 3444556666666666666
Q ss_pred HHhh
Q 000940 740 CKQY 743 (1216)
Q Consensus 740 rkq~ 743 (1216)
.||+
T Consensus 753 GkQL 756 (769)
T PF05911_consen 753 GKQL 756 (769)
T ss_pred HHHH
Confidence 6654
No 285
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.52 E-value=0.16 Score=64.24 Aligned_cols=19 Identities=11% Similarity=0.319 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000940 691 TFRDIQEKKMELYQAILKM 709 (1216)
Q Consensus 691 eLqDiQ~Q~~eLqaALa~l 709 (1216)
+|+.++.++..|++.|.++
T Consensus 640 EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 640 ELERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555543
No 286
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=95.47 E-value=1 Score=51.18 Aligned_cols=95 Identities=16% Similarity=0.217 Sum_probs=69.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000940 636 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD 715 (1216)
Q Consensus 636 mQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~ed 715 (1216)
-++|...=..+++.|..|..++.-+--|+-+++..|-...-+....=..|...|..|+..+.+...|...|++++....+
T Consensus 84 A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~ 163 (271)
T PF13805_consen 84 AKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQ 163 (271)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCC
Confidence 34566777777888999999999888888888888877766666666677788888888888888888888888733322
Q ss_pred ----ccHHHHHHHHHHHHH
Q 000940 716 ----GTLQQHADHIQNELE 730 (1216)
Q Consensus 716 ----a~LQeRlk~iQ~kL~ 730 (1216)
..|+++|.++.++..
T Consensus 164 s~kl~~LeqELvraEae~l 182 (271)
T PF13805_consen 164 SPKLVVLEQELVRAEAENL 182 (271)
T ss_dssp TTTHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhh
Confidence 556677766664443
No 287
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.47 E-value=0.86 Score=58.26 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 614 KVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFR 693 (1216)
Q Consensus 614 KL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLq 693 (1216)
...+|+..+....++++.++.+++|+... |.++..++..++..-..++.+++-+......|+.++..+|+++.
T Consensus 604 eK~~Le~~L~~~~d~lE~~~~qL~E~E~~-------L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~ 676 (769)
T PF05911_consen 604 EKEELEMELASCQDQLESLKNQLKESEQK-------LEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAE 676 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 33445555555555555555555554443 33344444434444444444444444555666677777778888
Q ss_pred HHHHHHHHHHHHHHH
Q 000940 694 DIQEKKMELYQAILK 708 (1216)
Q Consensus 694 DiQ~Q~~eLqaALa~ 708 (1216)
.++.++..|+..|.+
T Consensus 677 ~l~~Ki~~Le~Ele~ 691 (769)
T PF05911_consen 677 ELQSKISSLEEELEK 691 (769)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888777
No 288
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=95.46 E-value=0.88 Score=51.64 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 000940 676 KQSGDVASKLTLE--EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE-ELVKILNDRCKQ 742 (1216)
Q Consensus 676 kQIsELqsqIA~l--EaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~-eLEKaL~earkq 742 (1216)
+.+.+.+..|+.+ ++.+-.+-.=+.+.+..+..+.+=.|-..|-.+|+++...++ .|+..|.+.|..
T Consensus 125 ~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~ 194 (291)
T PF10475_consen 125 KTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQD 194 (291)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555554 566777777778888888766666677888888888888888 678888888874
No 289
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.46 E-value=0.015 Score=43.29 Aligned_cols=24 Identities=42% Similarity=0.517 Sum_probs=16.7
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHH
Q 000940 441 YTKVFVQVDIDRDGKITGEQAYNL 464 (1216)
Q Consensus 441 y~eaF~~fDkDgDG~ISgdELr~~ 464 (1216)
++++|..+|+|+||+|+.+|++.+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 356677777777777777777664
No 290
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=95.42 E-value=1.3 Score=53.82 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--CCCCccHHHHHHHHH
Q 000940 691 TFRDIQEKKMELYQAILKMEG--ESGDGTLQQHADHIQ 726 (1216)
Q Consensus 691 eLqDiQ~Q~~eLqaALa~lE~--r~eda~LQeRlk~iQ 726 (1216)
-|+=+++++...+..+.+++. ..+...|++.|+.++
T Consensus 141 ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~ 178 (475)
T PRK10361 141 LLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQ 178 (475)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443331 113356666666655
No 291
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.42 E-value=0.4 Score=53.58 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 000940 688 EEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE 730 (1216)
Q Consensus 688 lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~ 730 (1216)
|+.++..++.++..|..+...-+.. ...||.++..++..+.
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~E--a~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEE--AEELQEELEEAREDEE 120 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 4445555555555555554442211 1334444444444443
No 292
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.40 E-value=0.57 Score=55.45 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=18.2
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHH
Q 000940 651 NEITERVSGDKREVELLAKKYEEKY 675 (1216)
Q Consensus 651 nei~eEvs~lKrEiE~Lr~kYEE~~ 675 (1216)
+.+-++|.+|+.|-.-|++||++..
T Consensus 204 N~LwKrmdkLe~ekr~Lq~KlDqpv 228 (552)
T KOG2129|consen 204 NSLWKRMDKLEQEKRYLQKKLDQPV 228 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 5566777777777777888887654
No 293
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=95.39 E-value=2.5 Score=46.42 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=39.8
Q ss_pred HHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHhcHHHHH
Q 000940 602 NAKLKEAT-EADKKVEELEKEILTSREKIQFCSTKMQELI---LYKSRCDNRLNEITERVSGDKREVE 665 (1216)
Q Consensus 602 n~~rqEAe-E~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~---m~kqR~edeLnei~eEvs~lKrEiE 665 (1216)
..++++.. .|.+++.+|+.++..-..++..++.+++.|. .-+...+.+|..+.+++...+.+..
T Consensus 35 ~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~ 102 (206)
T PF14988_consen 35 QRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHA 102 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443 3888888999888887788888888877554 4444445555555555554444433
No 294
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=95.37 E-value=1.7 Score=53.65 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=15.5
Q ss_pred ccccccC-cccCcccccchhccchhcccc
Q 000940 752 LVELPFG-WQPGIQEGTADWDEDWDKLED 779 (1216)
Q Consensus 752 ~vElp~g-~~~~~qe~a~~w~edw~~~~d 779 (1216)
..+||.- .+.|+---+.+-++ |..+..
T Consensus 453 l~~l~~~a~~~Gv~s~~~L~~r-f~~v~~ 480 (582)
T PF09731_consen 453 LSSLPPEAAQRGVPSEAQLRNR-FERVAP 480 (582)
T ss_pred HHhcCHHHhhCCCCCHHHHHHH-HHHHHH
Confidence 3455543 33366666677776 666644
No 295
>PRK09343 prefoldin subunit beta; Provisional
Probab=95.36 E-value=0.43 Score=48.04 Aligned_cols=36 Identities=6% Similarity=0.062 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000940 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDN 648 (1216)
Q Consensus 613 kKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~ed 648 (1216)
.++.++-.+++.+++++..+..+.+.|....++++.
T Consensus 7 ~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~ 42 (121)
T PRK09343 7 PEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINK 42 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555566666666666666666665555433
No 296
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.33 E-value=0.15 Score=55.68 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 000940 617 ELEKEILTS 625 (1216)
Q Consensus 617 ELeaEi~~l 625 (1216)
++++|+.++
T Consensus 97 ~le~el~~l 105 (206)
T PRK10884 97 DLENQVKTL 105 (206)
T ss_pred HHHHHHHHH
Confidence 333333333
No 297
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.33 E-value=0.5 Score=58.34 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 718 LQQHADHIQNELEELVKILNDRCK 741 (1216)
Q Consensus 718 LQeRlk~iQ~kL~eLEKaL~eark 741 (1216)
|...-++++.+|..|+..|.+...
T Consensus 405 L~~dE~~Ar~~l~~~~~~l~~ikR 428 (560)
T PF06160_consen 405 LRKDEKEAREKLQKLKQKLREIKR 428 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555544444433
No 298
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=95.33 E-value=0.27 Score=58.96 Aligned_cols=135 Identities=10% Similarity=0.098 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHH-------HHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY-------KQSGDVAS 683 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~-------kQIsELqs 683 (1216)
++..|++.+..+.+-++.+..||.+.+.|-=..+ ...+..-|.+|+.++-.++.++..+. -+|..|+.
T Consensus 247 Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~-----a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~ 321 (434)
T PRK15178 247 LENDVKSAQENLGAARLELLKIQHIQKDIDPKET-----ITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSA 321 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH
Confidence 4455555555555555555555544332221111 12233334445555555555544443 34555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCCccHHHHHHHHH----HHHHHHHHHHHHHHHh-hCc--ccCcccc
Q 000940 684 KLTLEEATFRDIQEKKMELY--QAILKMEGESGDGTLQQHADHIQ----NELEELVKILNDRCKQ-YGL--RAKPTLL 752 (1216)
Q Consensus 684 qIA~lEaeLqDiQ~Q~~eLq--aALa~lE~r~eda~LQeRlk~iQ----~kL~eLEKaL~earkq-~GL--~aK~~~~ 752 (1216)
+|+.+|.+|+..+.++..-. ..+...-.++ +.|+-+.+-++ .-|.-||+++.|+.+| +=| ...|+.+
T Consensus 322 rI~aLe~QIa~er~kl~~~~g~~~la~~laeY--e~L~le~efAe~~y~sAlaaLE~AR~EA~RQ~~YL~~iv~P~lP 397 (434)
T PRK15178 322 KIKVLEKQIGEQRNRLSNKLGSQGSSESLSLF--EDLRLQSEIAKARWESALQTLQQGKLQALRERQYLLIISQPMAE 397 (434)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeeeCCCCC
Confidence 55555555555555543100 0111111112 22222222233 4455779999998773 333 3355543
No 299
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.32 E-value=0.34 Score=63.21 Aligned_cols=77 Identities=16% Similarity=0.246 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HHHhcHHHHHHHHHHHHHHHHHHHHH
Q 000940 605 LKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITE--RVSGDKREVELLAKKYEEKYKQSGDV 681 (1216)
Q Consensus 605 rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~e--Evs~lKrEiE~Lr~kYEE~~kQIsEL 681 (1216)
+...+++...+.+++.+|..|++.++....+++.++.-+......++...+ .-..++++++.++.+++++..++..+
T Consensus 615 ~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 615 RRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344666777888888888877776666554333322111222333322 23356666667777777776655555
No 300
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=0.82 Score=55.32 Aligned_cols=86 Identities=19% Similarity=0.102 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEa 690 (1216)
+..+|.||++.-...--+|+.+|.+..+|++-.=|+...+.-++.+=-.|+.+-|+|+.|++.+.++++.= ..+.+
T Consensus 360 i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~P----nq~k~ 435 (508)
T KOG3091|consen 360 IGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAP----NQLKA 435 (508)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcCh----HHHHH
Confidence 44677777766667777888888888888887777654222222222378888888999998888777543 33344
Q ss_pred HHHHHHHHHH
Q 000940 691 TFRDIQEKKM 700 (1216)
Q Consensus 691 eLqDiQ~Q~~ 700 (1216)
.|+.++++++
T Consensus 436 Rl~~L~e~~r 445 (508)
T KOG3091|consen 436 RLDELYEILR 445 (508)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 301
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=95.31 E-value=0.79 Score=50.16 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000940 676 KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEG 711 (1216)
Q Consensus 676 kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~ 711 (1216)
.++..|+.++..++..+..++.++.+|+..|..++.
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~ 134 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARA 134 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555443
No 302
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=95.31 E-value=1.2 Score=55.00 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000940 719 QQHADHIQNELEELVKILNDRCK 741 (1216)
Q Consensus 719 QeRlk~iQ~kL~eLEKaL~eark 741 (1216)
..+|..++.+|+.|++++..+.+
T Consensus 377 ~~~l~~~~~~~~~le~~~~~~~~ 399 (582)
T PF09731_consen 377 LAKLAELNSRLKALEEALDARSE 399 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666555554
No 303
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=95.30 E-value=0.75 Score=59.40 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=31.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCcc
Q 000940 715 DGTLQQHADHIQNELEELVKILNDRCKQYGLRAKPT 750 (1216)
Q Consensus 715 da~LQeRlk~iQ~kL~eLEKaL~earkq~GL~aK~~ 750 (1216)
...+|..+.-++..|.++|-.+||+.|++|=+--++
T Consensus 1199 ltdvK~missf~d~laeiE~LrnErIKkHGaSkePL 1234 (1439)
T PF12252_consen 1199 LTDVKSMISSFNDRLAEIEFLRNERIKKHGASKEPL 1234 (1439)
T ss_pred hhhHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCcc
Confidence 357899999999999999999999999999765544
No 304
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.26 E-value=0.38 Score=57.63 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 605 LKEATEADKKVEELEKEILTSREK 628 (1216)
Q Consensus 605 rqEAeE~dkKL~ELeaEi~~lrqE 628 (1216)
.+||.+++.++..|+.+.-.++.+
T Consensus 287 i~ea~k~s~~i~~l~ek~r~l~~D 310 (622)
T COG5185 287 IQEAMKISQKIKTLREKWRALKSD 310 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444444333333
No 305
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=95.26 E-value=0.44 Score=58.60 Aligned_cols=124 Identities=23% Similarity=0.277 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 614 KVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFR 693 (1216)
Q Consensus 614 KL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLq 693 (1216)
||.+||.-|...++++......+|+--+..+. +..++-.|=.|+-+|+-+|--+.|+-.+-+.++...|..+|
T Consensus 140 KIrDLE~cie~kr~kLnatEEmLQqellsrts-------LETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~q 212 (861)
T KOG1899|consen 140 KIRDLETCIEEKRNKLNATEEMLQQELLSRTS-------LETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQ 212 (861)
T ss_pred hHHHHHHHHHHHHhhhchHHHHHHHHHHhhhh-------HHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHH
Confidence 45555555555555554433333321111111 11222223334444444444444444444555555555555
Q ss_pred HHH-HHHHHHHHHHH----HHh-cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 000940 694 DIQ-EKKMELYQAIL----KME-GESGDGTLQQHADHIQNELEELVKILNDRCKQYG 744 (1216)
Q Consensus 694 DiQ-~Q~~eLqaALa----~lE-~r~eda~LQeRlk~iQ~kL~eLEKaL~earkq~G 744 (1216)
++. .+..+|.++-. ++. -+++.+.|+|+...-+.++..|-..|-++..-.|
T Consensus 213 evn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~ 269 (861)
T KOG1899|consen 213 EVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADG 269 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcc
Confidence 553 22333333322 333 5668899999998888888877655555555444
No 306
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=95.25 E-value=1.7 Score=47.52 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=58.3
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHHHHHHHH
Q 000940 666 LLAKKYEEKY---KQSGDVASKLTLEEATF----RDIQEKKMELYQAILKMEGESGDG--TLQQHADHIQNELEELVKIL 736 (1216)
Q Consensus 666 ~Lr~kYEE~~---kQIsELqsqIA~lEaeL----qDiQ~Q~~eLqaALa~lE~r~eda--~LQeRlk~iQ~kL~eLEKaL 736 (1216)
.|-.||.+++ ++..+|+..|..+|.+| .+...++..+++.|..++-+.... ..+.....++.+|.+||..|
T Consensus 69 kL~~KY~~LK~~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L 148 (196)
T PF15272_consen 69 KLYSKYQELKKSSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNERERERIAYESRIADLERQL 148 (196)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3666666655 45556666666666555 223344555555555555333111 01122336779999999888
Q ss_pred HHHHHhhCcccCcccccccccCcccCcccccchhccchhccccccc
Q 000940 737 NDRCKQYGLRAKPTLLVELPFGWQPGIQEGTADWDEDWDKLEDEGF 782 (1216)
Q Consensus 737 ~earkq~GL~aK~~~~vElp~g~~~~~qe~a~~w~edw~~~~d~gf 782 (1216)
..+..-.+= -..++--+..+..+--++.+ -|-.|+.-=.|+-|
T Consensus 149 ~~~n~~~~~--~~~~s~~~s~~~~~~~~~~~-~~~~d~n~s~dt~f 191 (196)
T PF15272_consen 149 NSRNNSSND--NYVSSNSYSTSSYSIPYETN-SPLSDYNDSIDTQF 191 (196)
T ss_pred HHhcccCCC--CCccccccCCCcCCcchhcc-cccccccchhhHHH
Confidence 844432221 11123334445555555555 55554443334333
No 307
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.23 E-value=0.008 Score=59.50 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCccCHHHHHH
Q 000940 437 EVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCT 497 (1216)
Q Consensus 437 Ek~ey~eaF~~fDkDgDG~ISgdELr~~flgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvv 497 (1216)
.+..+.=.|..+|.|+||+|+..||+.+..-....+.=+...+..+|.|+||.|++.|++.
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3455666799999999999999999988754455566689999999999999999999974
No 308
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=95.23 E-value=0.49 Score=56.63 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 664 VELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1216)
Q Consensus 664 iE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa 707 (1216)
++.|+++|.++.+++.++...+.....++..++.++.+++..+.
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~ 330 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIA 330 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHH
Confidence 44556666666666666665554444444444444444444444
No 309
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=95.22 E-value=1.2 Score=46.61 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=36.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa 707 (1216)
=.++|++.+|++|+.+.++|.-|....+-.|-++.++++.+++.+..-+
T Consensus 81 P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~ 129 (159)
T PF04949_consen 81 PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKA 129 (159)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777888888888888888777777777777777777776555443
No 310
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=95.21 E-value=0.015 Score=66.92 Aligned_cols=124 Identities=13% Similarity=0.193 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 607 EATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 686 (1216)
Q Consensus 607 EAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA 686 (1216)
+.+.+-..|..||.-+..+++.+..+..++.+|+-..+.....|.+++.+|..++.+|..|+..+..+...|+.|...|.
T Consensus 29 DLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls 108 (326)
T PF04582_consen 29 DLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLS 108 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhh
Confidence 33333444555555555555555555555555554444444444445555555555555555555555555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCCCccHHHHHHHHHHHHHHHH
Q 000940 687 LEEATFRDIQEKKMELYQAILKME-GESGDGTLQQHADHIQNELEELV 733 (1216)
Q Consensus 687 ~lEaeLqDiQ~Q~~eLqaALa~lE-~r~eda~LQeRlk~iQ~kL~eLE 733 (1216)
..+..|.++|..+..++..|..|+ +-. .+.-.|.+++.+|+.||
T Consensus 109 ~h~ssIS~Lqs~v~~lsTdvsNLksdVS---t~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 109 DHSSSISDLQSSVSALSTDVSNLKSDVS---TQALNITDLESRVKALE 153 (326)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHhhhhhhhhhhhhhhhhh---hhcchHhhHHHHHHHHh
Confidence 666666666666666666665544 211 22233555555555554
No 311
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=95.19 E-value=0.68 Score=58.58 Aligned_cols=110 Identities=13% Similarity=0.143 Sum_probs=71.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhc
Q 000940 638 ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE------EATFRDIQEKKMELYQAILKMEG 711 (1216)
Q Consensus 638 EL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~l------EaeLqDiQ~Q~~eLqaALa~lE~ 711 (1216)
-|.++..||..-+... +..|....+.|..+|+.+++++.+|.+.|-+. .....+|++.|+.|+..|.++..
T Consensus 221 Ri~~F~~ra~~~fp~a---~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~ 297 (683)
T PF08580_consen 221 RIEEFQSRAESIFPSA---CEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQE 297 (683)
T ss_pred HHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678889986644443 44567777778899999999999998876554 57888899999999999988774
Q ss_pred CC-------CCccHHHHHHHHHHHHHH----HHHHHHHHHHhhCcccCcc
Q 000940 712 ES-------GDGTLQQHADHIQNELEE----LVKILNDRCKQYGLRAKPT 750 (1216)
Q Consensus 712 r~-------eda~LQeRlk~iQ~kL~e----LEKaL~earkq~GL~aK~~ 750 (1216)
.. ....|-.+|....++... +.|++-+..=.+||..|-+
T Consensus 298 ~~~~~~~~~~~~~l~~~i~s~~~k~~~~~~~I~ka~~~sIi~~gv~~r~n 347 (683)
T PF08580_consen 298 AIDSGIHLDNPSKLSKQIESKEKKKSHYFPAIYKARVLSIIDKGVADRLN 347 (683)
T ss_pred cccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHhhhhhHHHHhh
Confidence 41 113344444444433332 2334444444677655555
No 312
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.17 E-value=0.78 Score=55.90 Aligned_cols=127 Identities=16% Similarity=0.146 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHH------------------HHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELL------------------AKKYE 672 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~L------------------r~kYE 672 (1216)
++.-+..++.++.+.-|+|..++.+..-+.....++.+++++++++-..|.+-.++| .+++.
T Consensus 586 ~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq 665 (741)
T KOG4460|consen 586 IQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQ 665 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 445555555555444455555555444444455555555555554443333333332 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 673 EKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 741 (1216)
Q Consensus 673 E~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~eark 741 (1216)
-.-+++..|+..|..+.+.....|.-+.++++++.+ ..|+.. -...++||.-|.+|.....+-.|
T Consensus 666 ~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K--~~Y~l~--~~Q~~~iqsiL~~L~~~i~~~~k 730 (741)
T KOG4460|consen 666 LIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPK--PTYILS--AYQRKCIQSILKELGEHIREMVK 730 (741)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--Cccccc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 222677777777777777777755556666666666 666543 33466777777777555554444
No 313
>PRK11519 tyrosine kinase; Provisional
Probab=95.17 E-value=0.53 Score=59.67 Aligned_cols=122 Identities=15% Similarity=0.165 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 000940 625 SREKIQFCSTKMQELILYKSRCDNRLNEITERVS--GDKREVELLAKKYEEKYKQSGDVASKLTLEE-------ATFRDI 695 (1216)
Q Consensus 625 lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs--~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lE-------aeLqDi 695 (1216)
.++-++|++.|++++.......+.+|++-+.+=. .+..+.+.+-.++.+..+|+.+|+.+++.+. -.++.+
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l 344 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTL 344 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHH
Confidence 3444567777777666666666665555443211 2333333333333334444444444443332 245556
Q ss_pred HHHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHHH---HHHHHHHHhhCcc
Q 000940 696 QEKKMELYQAILKMEGES-GDGTLQQHADHIQNELEELV---KILNDRCKQYGLR 746 (1216)
Q Consensus 696 Q~Q~~eLqaALa~lE~r~-eda~LQeRlk~iQ~kL~eLE---KaL~earkq~GL~ 746 (1216)
+.+.+.|++.+.+++++- .....+.++.+++.+.+-.+ ..|-+++++..+.
T Consensus 345 ~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~ 399 (719)
T PRK11519 345 LEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKIT 399 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 666666666666655322 22334455555555555333 3344444454443
No 314
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=95.14 E-value=0.57 Score=51.71 Aligned_cols=99 Identities=12% Similarity=0.237 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 609 TEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 688 (1216)
Q Consensus 609 eE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~l 688 (1216)
++|++.|...-.++..++++++.++.... .....-..--+.++..++......+..++..+.+...++..++.....+
T Consensus 41 ~~~~~~i~~aP~~~~~l~~~l~~l~~~~~--~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~a 118 (240)
T PF12795_consen 41 AEYQKQIDQAPKEIRELQKELEALKSQDA--PSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERA 118 (240)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhcccc--ccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 33445555555555555555554433200 0000000011233333333344444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000940 689 EATFRDIQEKKMELYQAILKM 709 (1216)
Q Consensus 689 EaeLqDiQ~Q~~eLqaALa~l 709 (1216)
..+|..++.++.++...|..+
T Consensus 119 q~~l~~~~~~l~ei~~~L~~~ 139 (240)
T PF12795_consen 119 QQQLSEARQRLQEIRNQLQNL 139 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 445555555555555544443
No 315
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.12 E-value=1.4 Score=57.22 Aligned_cols=104 Identities=16% Similarity=0.272 Sum_probs=70.0
Q ss_pred hhHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHH
Q 000940 585 LEKHLMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREV 664 (1216)
Q Consensus 585 ldd~lL~ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEi 664 (1216)
.|++-+.++... ++++..+++|+....+++.+++.++.-+..+|.+.+.+|..+.+...+.++||..+..++....-+|
T Consensus 649 wdek~~~~L~~~-k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i 727 (1141)
T KOG0018|consen 649 WDEKEVDQLKEK-KERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEI 727 (1141)
T ss_pred cCHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchH
Confidence 566666665543 5556655666654444566666777777777777777777777777777777777777777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 665 ELLAKKYEEKYKQSGDVASKLTLEE 689 (1216)
Q Consensus 665 E~Lr~kYEE~~kQIsELqsqIA~lE 689 (1216)
-.++.+++.....+.+|+.++..+|
T Consensus 728 ~~i~r~l~~~e~~~~~L~~~~n~ve 752 (1141)
T KOG0018|consen 728 SEIKRKLQNREGEMKELEERMNKVE 752 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777777777766663
No 316
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.76 Score=48.01 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000940 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCD 647 (1216)
Q Consensus 613 kKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~e 647 (1216)
..+.+|-++++-++.+++.++.++..|.+.+..+.
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~ 40 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQ 40 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666667777777776666665555443
No 317
>PRK10698 phage shock protein PspA; Provisional
Probab=95.11 E-value=1 Score=49.76 Aligned_cols=86 Identities=5% Similarity=0.064 Sum_probs=40.7
Q ss_pred HhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 000940 643 KSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHA 722 (1216)
Q Consensus 643 kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRl 722 (1216)
+..|...+..+..++...+..++.|+.++.+++..|.++..+-..|-+..+-++.++. ++..+.. .....--.+.
T Consensus 94 K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~-~~~~~~~----~~~~~a~~~f 168 (222)
T PRK10698 94 KQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRD-VRRQLDS----GKLDEAMARF 168 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC----CCcchHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444433 4444432 1111223456
Q ss_pred HHHHHHHHHHH
Q 000940 723 DHIQNELEELV 733 (1216)
Q Consensus 723 k~iQ~kL~eLE 733 (1216)
.++..+|+++|
T Consensus 169 ~rmE~ki~~~E 179 (222)
T PRK10698 169 ESFERRIDQME 179 (222)
T ss_pred HHHHHHHHHHH
Confidence 66777777765
No 318
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.09 E-value=0.65 Score=58.82 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHHHHHH
Q 000940 686 TLEEATFRDIQEKKMELYQAILKMEG-ESGDGTLQQHADHIQNELEEL 732 (1216)
Q Consensus 686 A~lEaeLqDiQ~Q~~eLqaALa~lE~-r~eda~LQeRlk~iQ~kL~eL 732 (1216)
.+||.+-=.+|+|+..|.+.-.+.|+ +-+..-|.|.+..++.+|+|+
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555444444441 113333444444444444443
No 319
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=95.08 E-value=0.35 Score=58.83 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 627 EKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELY 703 (1216)
Q Consensus 627 qEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLq 703 (1216)
.+-+-+..++......+..+.++|++...+++.++.|++..+.-|| .||+.+.+.|+.+..+|...+++|+.|+
T Consensus 441 ~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE---~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 441 AECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYE---EQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455555566667788899999999999999999999998 8888888888888888888888888776
No 320
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.08 E-value=1.6 Score=48.13 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHh--cCCCCccHHHHHHHHHHHHHHHHHHHH
Q 000940 697 EKKMELYQAILKME--GESGDGTLQQHADHIQNELEELVKILN 737 (1216)
Q Consensus 697 ~Q~~eLqaALa~lE--~r~eda~LQeRlk~iQ~kL~eLEKaL~ 737 (1216)
.++......|+.+. ...+...||..|+..+-++.-|++.|.
T Consensus 143 ekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~Le 185 (207)
T PF05010_consen 143 EKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLE 185 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444 222445567777777766666654433
No 321
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=95.05 E-value=2.8 Score=45.48 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 000940 617 ELEKEILTSREKIQ 630 (1216)
Q Consensus 617 ELeaEi~~lrqEIE 630 (1216)
+.+.++..++++++
T Consensus 57 eakee~~~~r~~~E 70 (201)
T PF12072_consen 57 EAKEEAQKLRQELE 70 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 322
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=95.02 E-value=0.63 Score=52.65 Aligned_cols=8 Identities=13% Similarity=0.356 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 000940 723 DHIQNELE 730 (1216)
Q Consensus 723 k~iQ~kL~ 730 (1216)
++++.+|+
T Consensus 189 ~~~~~~l~ 196 (334)
T TIGR00998 189 QEAKERLK 196 (334)
T ss_pred HHHHHHHH
Confidence 33333333
No 323
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=95.02 E-value=0.029 Score=43.03 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=19.5
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHh
Q 000940 12 FEAYFRRADLDGDGQISGAEAVAFFQG 38 (1216)
Q Consensus 12 Y~~vF~~lD~DgDGkISg~Ea~~fL~~ 38 (1216)
|+++|+.+|.|+||+|+.+|++.+|.+
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 667777777777777777777777763
No 324
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=95.01 E-value=1.8 Score=54.32 Aligned_cols=118 Identities=20% Similarity=0.244 Sum_probs=63.5
Q ss_pred hcHHHHHHHHHhHHHHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHHHhc
Q 000940 593 LSKEEQESLNAKLKEATE-ADKKVEELE----KEILTSREKIQFCSTKMQ-------ELILYKSRCDNRLNEITERVSGD 660 (1216)
Q Consensus 593 l~~Eee~~ln~~rqEAeE-~dkKL~ELe----aEi~~lrqEIE~lrtQmQ-------EL~m~kqR~edeLnei~eEvs~l 660 (1216)
.-.+|++++-.+++-... ++.+|.+.+ ++++.+.+....+...++ ++..+-.-+...+.+..++...+
T Consensus 482 qLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~l 561 (739)
T PF07111_consen 482 QLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAEL 561 (739)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 335667777666553332 445544443 334444444444444433 22233333333445555555577
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 661 KREVELLAKKYEE-KYKQSGDVAS----KLTLEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 661 KrEiE~Lr~kYEE-~~kQIsELqs----qIA~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
++|+...+..|+. ++..|++|+. +|+++|..|..++.++..---+|-.++
T Consensus 562 R~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLRQ~q 616 (739)
T PF07111_consen 562 RRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLRQIQ 616 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777764 3345566654 466677777777777665554554443
No 325
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=95.00 E-value=1.1 Score=56.67 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEIT-ERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRD 694 (1216)
Q Consensus 623 ~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~-eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqD 694 (1216)
...+++++.+++++++|....-+|.. ++.- -..+.++.+.-.++.++|++.|++.++.++|+.+|++|.+
T Consensus 964 aE~daeLe~~~ael~eleqk~le~~e--Dea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQ 1034 (1424)
T KOG4572|consen 964 AEIDAELEKEFAELIELEQKALECKE--DEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQ 1034 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666677766655544433 1111 1112223333334566666666666666666666555443
No 326
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=94.99 E-value=1.6 Score=41.23 Aligned_cols=63 Identities=16% Similarity=0.291 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 000940 612 DKKVEELEKEILTSREKIQFCS-----TKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK 674 (1216)
Q Consensus 612 dkKL~ELeaEi~~lrqEIE~lr-----tQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~ 674 (1216)
..+|..|+.++......+.... ..+.....+...+...+.....++..++.+++.++..+-+.
T Consensus 18 ~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 18 EEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333333 33334444444444444444444444444444444444333
No 327
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.98 E-value=0.9 Score=56.02 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH-HHHHHHHHHHHHhhCcc
Q 000940 690 ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNEL-EELVKILNDRCKQYGLR 746 (1216)
Q Consensus 690 aeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL-~eLEKaL~earkq~GL~ 746 (1216)
..+..+++++.++++.+.++ -++|..+..+. .+|++..++.++.+|+.
T Consensus 346 ~~le~L~~el~~l~~~l~~~---------a~~Ls~~R~~~a~~l~~~v~~~l~~L~m~ 394 (563)
T TIGR00634 346 ESLEALEEEVDKLEEELDKA---------AVALSLIRRKAAERLAKRVEQELKALAME 394 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444555555444444442 23455554444 48899999999999985
No 328
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.98 E-value=0.6 Score=47.31 Aligned_cols=49 Identities=14% Similarity=0.394 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 685 LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQ 742 (1216)
Q Consensus 685 IA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~earkq 742 (1216)
+..++.++++++.++..+- .|-|.. -|++.+++.+|.+|++...+..++
T Consensus 70 ~~~L~~el~~l~~ry~t~L----ellGEK-----~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 70 VEELEQELEELQQRYQTLL----ELLGEK-----SEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhcch-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544222 222333 244677777777777666555443
No 329
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=94.97 E-value=0.45 Score=56.32 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVEL 666 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~ 666 (1216)
..++..++.+|...++.+.+..+.+||+++...+|++.|+..+.+++-+.+.+.+.
T Consensus 25 ~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~ 80 (459)
T KOG0288|consen 25 CEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKT 80 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888888888888888999999998888888888777777766554444443
No 330
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.97 E-value=1 Score=49.38 Aligned_cols=64 Identities=23% Similarity=0.294 Sum_probs=28.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000940 595 KEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS 658 (1216)
Q Consensus 595 ~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs 658 (1216)
+|.+..++.+..|+-.+..++.++.+++.....++..++..+..-.+....|+++|.....++.
T Consensus 20 ke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~ 83 (202)
T PF06818_consen 20 KESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAE 83 (202)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHH
Confidence 4444444444444444444455555555444444444444333333344444444444443333
No 331
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.95 E-value=1.3 Score=51.30 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=27.4
Q ss_pred HHHhcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 656 RVSGDKREVELLAKKYEEKY-KQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 656 Evs~lKrEiE~Lr~kYEE~~-kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
++.+++.|--.|+..++..+ -.|..|..+|..++.+....+..+.+|...-.++|
T Consensus 114 kl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlE 169 (310)
T PF09755_consen 114 KLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLE 169 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Confidence 34445554445555544433 44556666666665555444444444444444433
No 332
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=94.95 E-value=0.55 Score=46.74 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000940 718 LQQHADHIQNELEELVKILNDR 739 (1216)
Q Consensus 718 LQeRlk~iQ~kL~eLEKaL~ea 739 (1216)
|+.|+...+.+...||=.|.|+
T Consensus 84 l~~r~~k~~~dka~lel~l~e~ 105 (107)
T PF09304_consen 84 LESRLLKAQKDKAILELKLAEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHhh
Confidence 4444555555555555444444
No 333
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=94.92 E-value=1.3 Score=53.06 Aligned_cols=154 Identities=19% Similarity=0.183 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 000940 635 KMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK------ 708 (1216)
Q Consensus 635 QmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~------ 708 (1216)
++.+|.+....|.+.|.+...+..++..+-...-.+|-..+.|+=+.+..|+.+|++++=.+.|+.-|.+...-
T Consensus 198 ~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~~F~I 277 (447)
T KOG2751|consen 198 QLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNATFHI 277 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhheeeE
Confidence 33344444444444444443333333333333344444444555556667888888888888888877776652
Q ss_pred -----------Hh-cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCcc-----------------cccccccCc
Q 000940 709 -----------ME-GESGDGTLQQHADHIQNELEELVKILNDRCKQYGLRAKPT-----------------LLVELPFGW 759 (1216)
Q Consensus 709 -----------lE-~r~eda~LQeRlk~iQ~kL~eLEKaL~earkq~GL~aK~~-----------------~~vElp~g~ 759 (1216)
.. ++. ......-+.||+-+.++.=.|.-.|+++||..-.- .++|||.=+
T Consensus 278 ~~~G~fgtIN~FRLG~l--p~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~~y~lvp~GshSyI~~~~~~~~~el~l~~ 355 (447)
T KOG2751|consen 278 WHDGEFGTINNFRLGRL--PSVPVEWDEINAAWGQTVLLLHTLANKIGLNFVRYRLVPMGSHSYIKKRMVNLPYELPLFQ 355 (447)
T ss_pred eecccccccccceeccc--cCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccceeeeecccchhHHHHhccCCCccchhhc
Confidence 11 222 22245578999999999999999999888744110 134444333
Q ss_pred ccCcccccchhccchhcccccccchhhhhhhccc
Q 000940 760 QPGIQEGTADWDEDWDKLEDEGFTFVKELTLEVQ 793 (1216)
Q Consensus 760 ~~~~qe~a~~w~edw~~~~d~gf~~~~~~t~~~~ 793 (1216)
- ++--.-|+.-+|+=.-.=.-.+++++..+.
T Consensus 356 s---gg~~~f~~tkfD~amvafLd~L~qf~~e~~ 386 (447)
T KOG2751|consen 356 S---GGLKFFWSTKFDKAMVAFLDCLKQFADELE 386 (447)
T ss_pred C---CCceeeeccccCHHHHHHHHHHHHHHHHHH
Confidence 3 334566777444321111224566666665
No 334
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.92 E-value=2.6 Score=46.01 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 646 CDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 685 (1216)
Q Consensus 646 ~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqI 685 (1216)
.+.+++.+..+++..|+-.+..-.||+++...+.=++..|
T Consensus 58 dEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dL 97 (205)
T KOG1003|consen 58 LEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGEL 97 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3333444444444445555555555665554444444333
No 335
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.86 E-value=0.66 Score=57.99 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCC------ccHHHHHHHHHHHHH-------HH
Q 000940 668 AKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEG--ESGD------GTLQQHADHIQNELE-------EL 732 (1216)
Q Consensus 668 r~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~--r~ed------a~LQeRlk~iQ~kL~-------eL 732 (1216)
+.+.+....+|.+|.++|++....|.-.|.+--+-++||+++|. .-|+ .+.++-+.++.++-+ +|
T Consensus 382 e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi~ALekAk~Lc~l~dLt~~~~e~~~~~f~A~~e~~Te~lL~L 461 (1480)
T COG3096 382 EARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALERAKELCHLPDLTADSAEEWLETFQAKEEEATEKLLSL 461 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 44444455677788888888887777777777777888887772 2233 222333333333332 22
Q ss_pred -------HHHHHHHHHhhCcccCcccccccccCccc
Q 000940 733 -------VKILNDRCKQYGLRAKPTLLVELPFGWQP 761 (1216)
Q Consensus 733 -------EKaL~earkq~GL~aK~~~~vElp~g~~~ 761 (1216)
+.+.++.-|-|.|+.|-.--|.-+.+|+.
T Consensus 462 e~kms~s~AA~sQF~~AyqLV~~iaGE~~RS~A~~~ 497 (1480)
T COG3096 462 EQKMSMAQAAHSQFEQAYQLVVAIAGELARSEAWDV 497 (1480)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHhCccchhhHHHH
Confidence 34555555566666655444444455653
No 336
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.83 E-value=1.8 Score=56.56 Aligned_cols=14 Identities=7% Similarity=0.316 Sum_probs=8.5
Q ss_pred HHHHHHHHHhCCCC
Q 000940 439 QKYTKVFVQVDIDR 452 (1216)
Q Consensus 439 ~ey~eaF~~fDkDg 452 (1216)
..+++||+.++..+
T Consensus 166 Ral~~IFd~Le~~~ 179 (1041)
T KOG0243|consen 166 RALRQIFDTLEAQG 179 (1041)
T ss_pred HHHHHHHHHHHhcC
Confidence 34666777776544
No 337
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=94.83 E-value=3.3 Score=49.12 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 612 DKKVEELEKEILTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK 684 (1216)
Q Consensus 612 dkKL~ELeaEi~~lrqEIE-~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsq 684 (1216)
+..+......+....+.++ .++..+.|...-++.++..|..+..+|...+++|+.|+..+.++..-++-.+..
T Consensus 228 ~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTR 301 (384)
T PF03148_consen 228 DSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTR 301 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3455555555555555566 777788888888888888888888888888888888888887776555444433
No 338
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=94.83 E-value=0.58 Score=47.51 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQEL 639 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL 639 (1216)
+..++..++.++..+..++..++..+.++
T Consensus 11 l~~~~~~l~~~~~~l~~~~~~l~~~~~e~ 39 (140)
T PRK03947 11 LAAQLQALQAQIEALQQQLEELQASINEL 39 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555444444444
No 339
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=94.82 E-value=0.58 Score=55.76 Aligned_cols=123 Identities=18% Similarity=0.234 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEa 690 (1216)
.+.-++.+.+|+....++++.|++=++.|..+.... +...+..++.+++.|-++|.++++++.++-.+|...|.++|.
T Consensus 141 ~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~ 218 (447)
T KOG2751|consen 141 MDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEF 218 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888888888777666554432 235556666677777777777777666666666666665554
Q ss_pred HHHHHHHHHHHHHHHHH-----HHhcCCCCccHHHHHHHHHHHHHHHHHH
Q 000940 691 TFRDIQEKKMELYQAIL-----KMEGESGDGTLQQHADHIQNELEELVKI 735 (1216)
Q Consensus 691 eLqDiQ~Q~~eLqaALa-----~lE~r~eda~LQeRlk~iQ~kL~eLEKa 735 (1216)
+-..+-++..+.....- .++.+.+-++|.-.++=.+.+|+.|.|.
T Consensus 219 ~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~kt 268 (447)
T KOG2751|consen 219 KAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKT 268 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhh
Confidence 43333333333333322 2334444455555555555566555443
No 340
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.80 E-value=1.7 Score=54.46 Aligned_cols=97 Identities=14% Similarity=0.187 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000940 617 ELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY----KQSGDVASKLTLEEATF 692 (1216)
Q Consensus 617 ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~----kQIsELqsqIA~lEaeL 692 (1216)
.++..+..++.+.+...++++.|...+..+.++|+.+.+++..-..+++....+-|+.. -++.....+|..+|..+
T Consensus 517 k~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~ 596 (786)
T PF05483_consen 517 KQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKC 596 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHH
Confidence 33444566666666777788888888888999999999888877777776333322221 23333344455555555
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 000940 693 RDIQEKKMELYQAILKMEGES 713 (1216)
Q Consensus 693 qDiQ~Q~~eLqaALa~lE~r~ 713 (1216)
..+++|+.+-...|.+++..+
T Consensus 597 ~~LrKqvEnk~K~ieeLqqeN 617 (786)
T PF05483_consen 597 NNLRKQVENKNKNIEELQQEN 617 (786)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 555555555555555544333
No 341
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.77 E-value=2.2 Score=51.03 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCcccCccc
Q 000940 725 IQNELEELVKILNDRCKQYGLRAKPTL 751 (1216)
Q Consensus 725 iQ~kL~eLEKaL~earkq~GL~aK~~~ 751 (1216)
+|.=+++|.|.|.-++.+++..|.+..
T Consensus 372 tqELieelrkelehlr~~kl~~a~p~r 398 (502)
T KOG0982|consen 372 TQELIEELRKELEHLRRRKLVLANPVR 398 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 344455778888888888887776664
No 342
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.72 E-value=0.61 Score=57.02 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=30.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhcHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 638 ELILYKSRCDNRLNEITERVSGDKR--------------EVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKK 699 (1216)
Q Consensus 638 EL~m~kqR~edeLnei~eEvs~lKr--------------EiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~ 699 (1216)
+|..|++++.--|......|..||. |++.|+.+.+.++-++..|+.+|..+++++++.+.++
T Consensus 236 el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~ 311 (511)
T PF09787_consen 236 ELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQL 311 (511)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554443334444444444444 1444555555555555555555555555555554443
No 343
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.83 Score=57.58 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=8.7
Q ss_pred cHHHHHHHHHHHHHHHH
Q 000940 717 TLQQHADHIQNELEELV 733 (1216)
Q Consensus 717 ~LQeRlk~iQ~kL~eLE 733 (1216)
.+....++|+.+++.|.
T Consensus 598 ~~~~k~~rleEE~e~L~ 614 (698)
T KOG0978|consen 598 IEKFKRKRLEEELERLK 614 (698)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555553
No 344
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.70 E-value=3.2 Score=52.22 Aligned_cols=18 Identities=39% Similarity=0.326 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000940 724 HIQNELEELVKILNDRCK 741 (1216)
Q Consensus 724 ~iQ~kL~eLEKaL~eark 741 (1216)
.++.+++.|+..+.++.+
T Consensus 279 ~LqeE~e~Lqskl~~~~~ 296 (716)
T KOG4593|consen 279 LLQEELEGLQSKLGRLEK 296 (716)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455444444444
No 345
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=94.65 E-value=2.7 Score=40.43 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000940 689 EATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 689 EaeLqDiQ~Q~~eLqaALa~ 708 (1216)
+.+++.+...+..|..++.-
T Consensus 78 ~~q~~~l~~~l~~l~~~~~~ 97 (127)
T smart00502 78 EQQLESLTQKQEKLSHAINF 97 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 346
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=94.64 E-value=1.6 Score=51.76 Aligned_cols=24 Identities=4% Similarity=0.156 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 000940 720 QHADHIQNELEELVKILNDRCKQY 743 (1216)
Q Consensus 720 eRlk~iQ~kL~eLEKaL~earkq~ 743 (1216)
+++.+++.+|.+++..+.++..++
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666766666666666544
No 347
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=94.64 E-value=0.51 Score=44.94 Aligned_cols=30 Identities=10% Similarity=0.092 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000940 619 EKEILTSREKIQFCSTKMQELILYKSRCDN 648 (1216)
Q Consensus 619 eaEi~~lrqEIE~lrtQmQEL~m~kqR~ed 648 (1216)
..++..+++++..+..+++.|.....++..
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~ 33 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELEL 33 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555544433
No 348
>PF13166 AAA_13: AAA domain
Probab=94.63 E-value=2.1 Score=53.65 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=8.2
Q ss_pred CCCCccCHHHHHHH
Q 000940 485 DNDGMLSLKEFCTA 498 (1216)
Q Consensus 485 D~DGkLdfdEFvvA 498 (1216)
+..-.++.++....
T Consensus 176 ~~~~~~~~~~l~~~ 189 (712)
T PF13166_consen 176 EESSLLSLEELEER 189 (712)
T ss_pred ccccccCHHHHHHH
Confidence 34456677776643
No 349
>PF15294 Leu_zip: Leucine zipper
Probab=94.61 E-value=0.67 Score=52.82 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRC---------DNRLNEITERVSGDKREVELLAKKYEEKYKQSGDV 681 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~---------edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsEL 681 (1216)
+..++..++.+....-++-.-++.++.+|+...... ..+|..+...++.+|.+++.. ......+...|
T Consensus 144 Lk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~---~~d~~~~~k~L 220 (278)
T PF15294_consen 144 LKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA---LQDKESQQKAL 220 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 445555555555444444445555555555421111 122444444455555444433 22223566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHHHHHHH
Q 000940 682 ASKLTLEEATFRDIQEKKMELYQAILKMEGES-GDGTLQQHADHIQNELEELVKILN 737 (1216)
Q Consensus 682 qsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~-eda~LQeRlk~iQ~kL~eLEKaL~ 737 (1216)
+..|+....+|-.+|+++...+.+|.+.=+.. .-.++++=|..-|.+|.+|.+.|.
T Consensus 221 ~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 221 EETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred HHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHhc
Confidence 77777777778888888777777777644322 224556666677788888877653
No 350
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=94.57 E-value=4.3 Score=49.65 Aligned_cols=19 Identities=11% Similarity=0.328 Sum_probs=12.4
Q ss_pred ccHHHHHHHHHHHHHHHHH
Q 000940 716 GTLQQHADHIQNELEELVK 734 (1216)
Q Consensus 716 a~LQeRlk~iQ~kL~eLEK 734 (1216)
..|+++|..++.+++++++
T Consensus 143 ~Pl~e~l~~f~~~v~~~~~ 161 (475)
T PRK10361 143 SPLREQLDGFRRQVQDSFG 161 (475)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4567777777777766643
No 351
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=94.57 E-value=2.1 Score=45.45 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=19.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 598 QESLNAKLKEATEADKKVEELEKEILTSREKIQFCST 634 (1216)
Q Consensus 598 e~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrt 634 (1216)
-.+.+..|+|.+.+.+.|.+++.++....++++.|..
T Consensus 19 f~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~ 55 (159)
T PF05384_consen 19 FEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEK 55 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555444433
No 352
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=0.065 Score=61.51 Aligned_cols=65 Identities=28% Similarity=0.376 Sum_probs=53.2
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHH---cCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHH
Q 000940 439 QKYTKVFVQVDIDRDGKITGEQAYNLFL---SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 503 (1216)
Q Consensus 439 ~ey~eaF~~fDkDgDG~ISgdELr~~fl---gs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~LI~ 503 (1216)
.+=++.|+..|.|++|.++.+|+..||- --.+..-+|++-+...|.|+||+|+++||+.-|+-..
T Consensus 163 ~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 163 ARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 4456779999999999999999999982 2345566788889999999999999999996555444
No 353
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=94.54 E-value=0.04 Score=41.09 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=17.9
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHH
Q 000940 13 EAYFRRADLDGDGQISGAEAVAFF 36 (1216)
Q Consensus 13 ~~vF~~lD~DgDGkISg~Ea~~fL 36 (1216)
+++|..+|.|+||+|+..|++.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 567778888888888888777653
No 354
>PRK12704 phosphodiesterase; Provisional
Probab=94.54 E-value=3.5 Score=50.93 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 000940 617 ELEKEILTSREKIQ 630 (1216)
Q Consensus 617 ELeaEi~~lrqEIE 630 (1216)
+.+.++...+++++
T Consensus 61 eaeeE~~~~R~Ele 74 (520)
T PRK12704 61 EAKEEIHKLRNEFE 74 (520)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 355
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.53 E-value=1.1 Score=57.65 Aligned_cols=16 Identities=6% Similarity=0.057 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 000940 719 QQHADHIQNELEELVK 734 (1216)
Q Consensus 719 QeRlk~iQ~kL~eLEK 734 (1216)
++.++++..+|.++.+
T Consensus 606 ~~~~~~~~~~l~~~~~ 621 (782)
T PRK00409 606 AHELIEARKRLNKANE 621 (782)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3445555555555443
No 356
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=2.2 Score=54.73 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 000940 676 KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHAD 723 (1216)
Q Consensus 676 kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk 723 (1216)
++...|+..|..++.++-+++.|+..+..+|+.+|.++.-+.|..+-.
T Consensus 774 ~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~ 821 (984)
T COG4717 774 EELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRE 821 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 566677777777888888888899999999999998776655444433
No 357
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.52 E-value=1.5 Score=48.71 Aligned_cols=18 Identities=17% Similarity=0.534 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000940 613 KKVEELEKEILTSREKIQ 630 (1216)
Q Consensus 613 kKL~ELeaEi~~lrqEIE 630 (1216)
..|.+++.++.+.++.+.
T Consensus 31 Q~ird~~~~l~~ar~~~A 48 (225)
T COG1842 31 QAIRDMESELAKARQALA 48 (225)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 358
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=94.52 E-value=2.7 Score=44.68 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHH
Q 000940 650 LNEITERVSGDKREVELLAKKYE 672 (1216)
Q Consensus 650 Lnei~eEvs~lKrEiE~Lr~kYE 672 (1216)
+..+..+...++++++.|++++.
T Consensus 75 ~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 75 FAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666655554
No 359
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=94.50 E-value=1.3 Score=50.92 Aligned_cols=18 Identities=11% Similarity=-0.014 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000940 690 ATFRDIQEKKMELYQAIL 707 (1216)
Q Consensus 690 aeLqDiQ~Q~~eLqaALa 707 (1216)
.+++.++.+++.++..+.
T Consensus 159 ~~~~~a~~~l~~a~~~~~ 176 (346)
T PRK10476 159 TAQRDAEVSLNQALLQAQ 176 (346)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444443333333333
No 360
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=94.49 E-value=1.9 Score=57.03 Aligned_cols=27 Identities=11% Similarity=0.025 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 000940 719 QQHADHIQNELEELVKILNDRCKQYGL 745 (1216)
Q Consensus 719 QeRlk~iQ~kL~eLEKaL~earkq~GL 745 (1216)
.+.+..++.++..+++.+.+....+|+
T Consensus 737 ~~~~~~~~~~~~~~~~~~~~~L~~~~f 763 (1047)
T PRK10246 737 QQQDVLEAQRLQKAQAQFDTALQASVF 763 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344444444455555555555555554
No 361
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=94.49 E-value=1.9 Score=43.99 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---ccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 686 TLEEATFRDIQEKKMELYQAILKMEGESGD---GTLQQHADHIQNELEELVKILNDRCKQ 742 (1216)
Q Consensus 686 A~lEaeLqDiQ~Q~~eLqaALa~lE~r~ed---a~LQeRlk~iQ~kL~eLEKaL~earkq 742 (1216)
..++.++...+.++..+......+...... ..++.++..+..+.+.|...+.++++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~ 208 (213)
T cd00176 149 KELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKK 208 (213)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666533322 567888888888888887777666654
No 362
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=94.49 E-value=0.018 Score=56.98 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=46.7
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 000940 7 TNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFN 68 (1216)
Q Consensus 7 ee~~~Y~~vF~~lD~DgDGkISg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~v 68 (1216)
.......=.|..+|.|+||.|+..|++.+...-.-++.-++.....+|.|+||.|++.|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34445555699999999999999999999776666677789999999999999999999974
No 363
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=94.48 E-value=1.2 Score=54.64 Aligned_cols=86 Identities=16% Similarity=0.298 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH-------HHHHH
Q 000940 660 DKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQN-------ELEEL 732 (1216)
Q Consensus 660 lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~-------kL~eL 732 (1216)
+..+.+.+..+++.+++|+.+...+|.....-...++.|+.+.+..++.....+ ..+|..+.+||. +..++
T Consensus 412 ~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~--e~~q~e~~~~Q~~~e~~~~e~~e~ 489 (607)
T KOG0240|consen 412 LEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLY--EDIQQELSEIQEENEAAKDEVKEV 489 (607)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666778888888888888888887777777777777776666655533333 445555555553 33344
Q ss_pred HHHHHHHHHhhCccc
Q 000940 733 VKILNDRCKQYGLRA 747 (1216)
Q Consensus 733 EKaL~earkq~GL~a 747 (1216)
-.+|.+.|..|+..-
T Consensus 490 ~~al~el~~~~~~~~ 504 (607)
T KOG0240|consen 490 LTALEELAVNYDQKS 504 (607)
T ss_pred HHHHHHHHHhhhHHH
Confidence 578888888777543
No 364
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.46 E-value=0.44 Score=52.57 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000940 646 CDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGE 712 (1216)
Q Consensus 646 ~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r 712 (1216)
|...|++..++..+|..++++|+.+|++.+-.+..|+-..+.||..++.+-.+...|..-+.+++.+
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 3333444444444555555555555555555454444444444444444444444444444444443
No 365
>PRK12705 hypothetical protein; Provisional
Probab=94.45 E-value=1.6 Score=53.55 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=18.9
Q ss_pred HHHHHHHHhhCcc--c-CcccccccccCcccCcc
Q 000940 734 KILNDRCKQYGLR--A-KPTLLVELPFGWQPGIQ 764 (1216)
Q Consensus 734 KaL~earkq~GL~--a-K~~~~vElp~g~~~~~q 764 (1216)
..+..+.|+|.-. + +-...|.||--|..|.=
T Consensus 180 ~ii~~aiqr~a~~~~~e~tvs~v~lp~demkGri 213 (508)
T PRK12705 180 NILAQAMQRIASETASDLSVSVVPIPSDAMKGRI 213 (508)
T ss_pred HHHHHHHHHhccchhhhheeeeeecCChHhhccc
Confidence 4455566655532 2 33468999988876643
No 366
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.44 E-value=2.4 Score=56.47 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 000940 722 ADHIQNELEELVKILNDRCKQY 743 (1216)
Q Consensus 722 lk~iQ~kL~eLEKaL~earkq~ 743 (1216)
..++.+.++.+.++++-.++|-
T Consensus 288 ~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 288 QRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 367
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.38 E-value=1.1 Score=51.83 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 000940 689 EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE 730 (1216)
Q Consensus 689 EaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~ 730 (1216)
...|.||+.++.+-...-.+ ...+|..|.++++.+-.+++
T Consensus 113 q~~L~dIq~~~ee~~~~~~k--~~~eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 113 QATLKDIQAQMEEQSERNIK--LREENEELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHHHHHhccchhHH--HHHHHHHHHHHHHHHHHHHH
Confidence 34566666665544444333 33345667777776665554
No 368
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.38 E-value=1.2 Score=59.19 Aligned_cols=98 Identities=19% Similarity=0.277 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 000940 613 KKVEELEKEILTSREKIQFCST---KMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVA---SKLT 686 (1216)
Q Consensus 613 kKL~ELeaEi~~lrqEIE~lrt---QmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELq---sqIA 686 (1216)
+...+...++....+.+++|+. .+..+....+.++-.+...++++.+++.++.....+++++.+.+.+|+ .++.
T Consensus 192 k~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~ 271 (1294)
T KOG0962|consen 192 KLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVK 271 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443 333445555555555666666666666666666666655554444433 3455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 687 LEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 687 ~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
.++.+...+.+++..|...+..+.
T Consensus 272 ~l~~e~~~l~~~~~~l~~~i~~~~ 295 (1294)
T KOG0962|consen 272 LLDSEHKNLKKQISRLREKILKIF 295 (1294)
T ss_pred HHHHHHHHHHHHHHHHHhhccccc
Confidence 566677777777766666666433
No 369
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.36 E-value=2.7 Score=54.71 Aligned_cols=6 Identities=0% Similarity=0.019 Sum_probs=2.7
Q ss_pred HHHHHH
Q 000940 460 QAYNLF 465 (1216)
Q Consensus 460 ELr~~f 465 (1216)
++..+|
T Consensus 144 e~~~fl 149 (908)
T COG0419 144 EFDAFL 149 (908)
T ss_pred hHHHHH
Confidence 444444
No 370
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=94.36 E-value=1 Score=57.00 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCc
Q 000940 722 ADHIQNELEELVKILNDRCKQYGL 745 (1216)
Q Consensus 722 lk~iQ~kL~eLEKaL~earkq~GL 745 (1216)
-+++-++|-||+-.+.-.|....+
T Consensus 302 r~kL~N~i~eLkGnIRV~CRvRP~ 325 (670)
T KOG0239|consen 302 RRKLHNEILELKGNIRVFCRVRPL 325 (670)
T ss_pred HHHHHHHHHHhhcCceEEEEecCC
Confidence 345556666666666666654443
No 371
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=94.36 E-value=1.1 Score=56.58 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=37.1
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH---H
Q 000940 658 SGDKREVELLAKKYEEKYKQSGDVASK----LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNEL---E 730 (1216)
Q Consensus 658 s~lKrEiE~Lr~kYEE~~kQIsELqsq----IA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL---~ 730 (1216)
..+|.|-..|+..+.++-+++-+..++ +.++..++.++..++..++=.|+.. +.||..|--.|++--++| .
T Consensus 465 e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~s--ekEN~iL~itlrQrDaEi~RL~ 542 (861)
T PF15254_consen 465 ENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEAS--EKENQILGITLRQRDAEIERLR 542 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--HhhhhHhhhHHHHHHHHHHHHH
Confidence 344444444444444444333333222 2333445555555555555555553 334455555555544444 4
Q ss_pred HHHHHHHH
Q 000940 731 ELVKILND 738 (1216)
Q Consensus 731 eLEKaL~e 738 (1216)
||.+.|+.
T Consensus 543 eLtR~LQ~ 550 (861)
T PF15254_consen 543 ELTRTLQN 550 (861)
T ss_pred HHHHHHHH
Confidence 55555543
No 372
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=94.33 E-value=1.1 Score=51.87 Aligned_cols=82 Identities=15% Similarity=0.230 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELIL----YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 686 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m----~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA 686 (1216)
..+.|.+++.+|.+++++|+.|..++.+-.. +..-+-..+..+..+++++.++++..+.++++.+..+++++..|+
T Consensus 86 q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~ 165 (301)
T PF06120_consen 86 QKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLN 165 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666777777777776666554432110 111111123455666666666666666666666666666666666
Q ss_pred HHHHHH
Q 000940 687 LEEATF 692 (1216)
Q Consensus 687 ~lEaeL 692 (1216)
.++.+.
T Consensus 166 ~~~~~~ 171 (301)
T PF06120_consen 166 DLTEQR 171 (301)
T ss_pred HHHHHH
Confidence 554433
No 373
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=94.32 E-value=3.9 Score=54.23 Aligned_cols=32 Identities=13% Similarity=-0.039 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 677 QSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 677 QIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~ 708 (1216)
++..|+..|...+.+++.++..+.+++.+|..
T Consensus 778 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~ 809 (1047)
T PRK10246 778 TLTQLEQLKQNLENQRQQAQTLVTQTAQALAQ 809 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544443
No 374
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=94.31 E-value=1.7 Score=51.87 Aligned_cols=61 Identities=13% Similarity=0.254 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH
Q 000940 668 AKKYEEKYKQSGDVASKLTLE--EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKIL 736 (1216)
Q Consensus 668 r~kYEE~~kQIsELqsqIA~l--EaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL 736 (1216)
+..+++...++..|..+|..+ ...|...+.++.+|++.|.. .++.++++.+.+|+.|...|
T Consensus 326 ~~~L~~~~~~L~~l~~rL~~lsP~~~L~r~~qrL~~L~~rL~~--------a~~~~L~~~~~rL~~l~~rL 388 (438)
T PRK00286 326 ERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRR--------AMRRQLKRKRQRLEALAQQL 388 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444322 33444455555555544443 23444555555555554444
No 375
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=94.30 E-value=4 Score=47.48 Aligned_cols=58 Identities=12% Similarity=0.203 Sum_probs=29.7
Q ss_pred CchhhHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 582 VPELEKHLMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELIL 641 (1216)
Q Consensus 582 ~P~ldd~lL~ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m 641 (1216)
-|+.-..+++.+-...+..++.. ........+.-++.|+...+++++..+.++++-+.
T Consensus 141 dP~~A~~ian~l~~~~~~~i~~~--~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 141 DAEEAQKINQRLLKEGERLINRL--NERARKDTIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555533333333331 11112355566677777777777766666555433
No 376
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=94.28 E-value=1.1 Score=51.11 Aligned_cols=54 Identities=9% Similarity=0.015 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 685 LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQ 742 (1216)
Q Consensus 685 IA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~earkq 742 (1216)
+...+.+++.++.++..+++.+..++... .++++..++.+|+.++..+.+++.+
T Consensus 147 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~l~~a~~~ 200 (331)
T PRK03598 147 LENARSSRDQAQATLKSAQDKLSQYREGN----RPQDIAQAKASLAQAQAALAQAELN 200 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666665544322 2456777777777777666666554
No 377
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=94.27 E-value=0.27 Score=57.08 Aligned_cols=88 Identities=16% Similarity=0.257 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 692 (1216)
Q Consensus 613 kKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeL 692 (1216)
+..++|+.+.+++++.-..|+.+++|+..-...|...++..+.+++.+++.++.++.... .+-.+.|+.+|.++
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~------~e~~~~i~~L~~~I 77 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLS------AEERELIEKLEEDI 77 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC------hhHHHHHHHHHHHH
Confidence 455678888888888888899999998888888887777777777777777777644311 12222334444455
Q ss_pred HHHHHHHHHHHHHH
Q 000940 693 RDIQEKKMELYQAI 706 (1216)
Q Consensus 693 qDiQ~Q~~eLqaAL 706 (1216)
++.+.++.++++-|
T Consensus 78 k~r~~~l~DmEa~L 91 (330)
T PF07851_consen 78 KERRCQLFDMEAFL 91 (330)
T ss_pred HHHHhhHHHHHhhC
Confidence 55555555555433
No 378
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.27 E-value=3.5 Score=52.50 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 000940 694 DIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE 730 (1216)
Q Consensus 694 DiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~ 730 (1216)
++|+++++|..++++ -+.-.|...+++|.-++++|.
T Consensus 670 ~LK~k~E~Lk~Evak-a~~~pd~~~k~kieal~~qik 705 (762)
T PLN03229 670 DLKSKIELLKLEVAK-ASKTPDVTEKEKIEALEQQIK 705 (762)
T ss_pred hHHHHHHHHHHHHHh-cCCCCCcchHHHHHHHHHHHH
Confidence 355555555555533 122244444555555544443
No 379
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.26 E-value=1.3 Score=54.24 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 606 KEATEADKKVEELEKEILTSREKIQFCSTKMQ 637 (1216)
Q Consensus 606 qEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQ 637 (1216)
+++.+++..+.-++......+.++..|+.+.+
T Consensus 214 ~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~ 245 (511)
T PF09787_consen 214 RESGELQEQLELLKAEGESEEAELQQYKQKAQ 245 (511)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34445556666666666666777777775443
No 380
>PRK10869 recombination and repair protein; Provisional
Probab=94.25 E-value=3.3 Score=51.36 Aligned_cols=42 Identities=10% Similarity=0.160 Sum_probs=30.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 601 LNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILY 642 (1216)
Q Consensus 601 ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~ 642 (1216)
.+...++..++.+++.+++.+.....+++++++.|+.||..-
T Consensus 159 ~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~ 200 (553)
T PRK10869 159 MRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEF 200 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Confidence 333344555567888888888888888888888888876643
No 381
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=94.21 E-value=0.66 Score=55.39 Aligned_cols=135 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHhHH-HHHH---HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 000940 600 SLNAKLK-EATE---ADKKVEELEKEILTSREKIQF--CSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEE 673 (1216)
Q Consensus 600 ~ln~~rq-EAeE---~dkKL~ELeaEi~~lrqEIE~--lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE 673 (1216)
.++-+++ ++|. +..++.+-.+++++++++++. +-..-+||..+..+..- +-.-......+++|+|+++-+.+=
T Consensus 242 ~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~-i~qs~~kstas~~E~ee~rve~~~ 320 (554)
T KOG4677|consen 242 SKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHL-IIQSPDKSTASRKEFEETRVELPF 320 (554)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh-ccCCCCcchhHHHHHHHHHhcccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH--HHHHHHHHHHHhh
Q 000940 674 KYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE--ELVKILNDRCKQY 743 (1216)
Q Consensus 674 ~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~--eLEKaL~earkq~ 743 (1216)
....++.++-+|-.|+.+|+|+..|+..|+.++.+ .++.+..+++..+. .+-...-|+-+++
T Consensus 321 s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~--------q~~~~h~~ka~~~~~~~~l~~~~ec~~~e 384 (554)
T KOG4677|consen 321 SAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQT--------QIFRKHPRKASILNMPLVLTLFYECFYHE 384 (554)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH--------HHHHhhhHhhhhhhchHHHHHHHHHHHHH
No 382
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.21 E-value=0.013 Score=73.60 Aligned_cols=60 Identities=32% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 000940 614 KVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK 674 (1216)
Q Consensus 614 KL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~ 674 (1216)
++.+++.++.+++++.+.|.....+...++-..+ .|.+...++.++..+++..++|+++.
T Consensus 268 ~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD-~lR~~a~r~~klE~~ve~YKkKLed~ 327 (713)
T PF05622_consen 268 ELEELEKEIDELRQENEELQAEAREARALRDELD-ELREKADRADKLENEVEKYKKKLEDL 327 (713)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433333333322221 13333334445555555555555443
No 383
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.20 E-value=5.2 Score=49.37 Aligned_cols=8 Identities=38% Similarity=0.393 Sum_probs=4.2
Q ss_pred Ccccccch
Q 000940 762 GIQEGTAD 769 (1216)
Q Consensus 762 ~~qe~a~~ 769 (1216)
+||--|.+
T Consensus 191 aiqr~a~~ 198 (514)
T TIGR03319 191 AIQRYAGD 198 (514)
T ss_pred HHHhccch
Confidence 55655543
No 384
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=94.19 E-value=2.7 Score=50.24 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHH
Q 000940 439 QKYTKVFVQVDIDRDGKITGEQAYNLF 465 (1216)
Q Consensus 439 ~ey~eaF~~fDkDgDG~ISgdELr~~f 465 (1216)
+.++.|-+.+|.|.+|-|+.+|--.||
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFl 94 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFL 94 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHH
Confidence 567778889999999999999977777
No 385
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=94.15 E-value=1.3 Score=54.89 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHh
Q 000940 649 RLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE-----EATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 649 eLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~l-----EaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
+|....++++.+++|++..+.-++ ..++|.++.+.|... +..+-++-..+.+++..|..+.
T Consensus 77 ~l~~a~~e~~~L~~eL~~~~~~l~-~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~ 142 (593)
T PF06248_consen 77 QLRDAAEELQELKRELEENEQLLE-VLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLK 142 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 344444444455555554433332 223444444444433 2345566666667777776654
No 386
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=94.13 E-value=2.1 Score=51.39 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHHH
Q 000940 689 EATFRDIQEKKMELYQAILKMEGES-GDGTLQQHADHIQNELEELV 733 (1216)
Q Consensus 689 EaeLqDiQ~Q~~eLqaALa~lE~r~-eda~LQeRlk~iQ~kL~eLE 733 (1216)
+.+++-++.+.+.|.+.+++++.+. ....++.++.+++.+++-.+
T Consensus 341 ~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r 386 (458)
T COG3206 341 PNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAAR 386 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHH
Confidence 4455556666666777777666443 33455556666665555443
No 387
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=94.11 E-value=1.9 Score=46.77 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 676 KQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1216)
Q Consensus 676 kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa 707 (1216)
.+|.+|+.+|-.++.+.+.+..+++.....|.
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~ 162 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKDKEIS 162 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333333
No 388
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=94.08 E-value=0.76 Score=45.27 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 676 KQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 676 kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~ 708 (1216)
+.+..|+.++..++.++..++.++.+|+..|+.
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 389
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.07 E-value=1.7 Score=53.17 Aligned_cols=32 Identities=13% Similarity=0.322 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 679 GDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 679 sELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
++|+..++.++.+|.+++.++.+++..|..++
T Consensus 378 S~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lr 409 (570)
T COG4477 378 SELQDNLEEIEKALTDIEDEQEKVQEHLTSLR 409 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444455555555555555555555555544
No 390
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=94.06 E-value=0.31 Score=59.30 Aligned_cols=98 Identities=11% Similarity=0.124 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEa 690 (1216)
++++|.+++.++...+++++-++.++.-|........ ..+...+......+++|.+-.+-...++.+|..++..++.
T Consensus 76 l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (525)
T TIGR02231 76 LRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLT---EPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAER 152 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666665555555555555543332221110 0010000011223344444444444555666666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 000940 691 TFRDIQEKKMELYQAILKMEG 711 (1216)
Q Consensus 691 eLqDiQ~Q~~eLqaALa~lE~ 711 (1216)
+++++++++..|+++|.++..
T Consensus 153 ~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 153 RIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 777777777777777766653
No 391
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.04 E-value=5.3 Score=44.57 Aligned_cols=30 Identities=7% Similarity=0.118 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 681 VASKLTLEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 681 LqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
+...++...+++...+.++...-..+..++
T Consensus 114 ~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~ 143 (261)
T cd07648 114 AVQAIQTTTAALQKAKEAYHARCLELERLR 143 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555554444444443
No 392
>PRK00106 hypothetical protein; Provisional
Probab=94.01 E-value=7.7 Score=48.22 Aligned_cols=9 Identities=11% Similarity=0.357 Sum_probs=4.7
Q ss_pred Ccccccchh
Q 000940 762 GIQEGTADW 770 (1216)
Q Consensus 762 ~~qe~a~~w 770 (1216)
+||--|.+.
T Consensus 212 aiqr~a~~~ 220 (535)
T PRK00106 212 AMQRLAGEY 220 (535)
T ss_pred HHHHhcchh
Confidence 555555543
No 393
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=93.98 E-value=1.1 Score=53.57 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 000940 690 ATFRDIQEKKMELY 703 (1216)
Q Consensus 690 aeLqDiQ~Q~~eLq 703 (1216)
..|...|+++..|+
T Consensus 305 E~~Es~qtRisklE 318 (395)
T PF10267_consen 305 EVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 394
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=2.6 Score=50.67 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=12.3
Q ss_pred cHHHHHHHHHHHHH----HHHHHHHHHHH
Q 000940 717 TLQQHADHIQNELE----ELVKILNDRCK 741 (1216)
Q Consensus 717 ~LQeRlk~iQ~kL~----eLEKaL~eark 741 (1216)
.+-.||++|-..+. ++.|.+.|.++
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etre 414 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRE 414 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455555543222 44555555555
No 395
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=93.91 E-value=0.063 Score=62.99 Aligned_cols=44 Identities=11% Similarity=0.286 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 667 LAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 667 Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
|..+++++...|++|+..|..++..++++.+++..|.+.|.++|
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLE 185 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444445555555544
No 396
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=93.88 E-value=1.9 Score=43.10 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000940 613 KKVEELEKEILTSREKIQ 630 (1216)
Q Consensus 613 kKL~ELeaEi~~lrqEIE 630 (1216)
.++...+.++..+.+...
T Consensus 27 ~~~~~~~~~l~~l~~~~~ 44 (141)
T TIGR02473 27 AEFERLETQLQQLIKYRE 44 (141)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444333333
No 397
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=93.88 E-value=0.93 Score=44.68 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 613 KKVEELEKEILTSREKIQFCSTKMQELILYKS 644 (1216)
Q Consensus 613 kKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kq 644 (1216)
.++..++.++..+..++..+..+++|..+...
T Consensus 10 ~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~ 41 (110)
T TIGR02338 10 AQLQQLQQQLQAVATQKQQVEAQLKEAEKALE 41 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666555444
No 398
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=93.87 E-value=0.3 Score=46.19 Aligned_cols=67 Identities=24% Similarity=0.289 Sum_probs=50.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE 730 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~ 730 (1216)
.+|.|++.+-+++.....+..+++.+|+..-.+++.|++++-+|+.+-.+++++||.. |.++..+|+
T Consensus 8 ~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeE-----I~rLr~eLe 74 (79)
T PF08581_consen 8 AIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEE-----IARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 4566777776666666667777777777777888999999999999999988888554 665555554
No 399
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.84 E-value=1.5 Score=53.32 Aligned_cols=108 Identities=13% Similarity=0.154 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000940 635 KMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESG 714 (1216)
Q Consensus 635 QmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~e 714 (1216)
++-+++.++.+...+|....+++..+..|+-.|..++-.+++++..+.-....+.+-|+-.+....++++++.+++++|
T Consensus 206 elrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDky- 284 (596)
T KOG4360|consen 206 ELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKY- 284 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-
Confidence 4444555555555566666666666666666666666666666666665555555666666666777778888877777
Q ss_pred CccHHHHHHHHHHHHHHHH-----HHHHHHHHhhC
Q 000940 715 DGTLQQHADHIQNELEELV-----KILNDRCKQYG 744 (1216)
Q Consensus 715 da~LQeRlk~iQ~kL~eLE-----KaL~earkq~G 744 (1216)
|.+-+-+.+++.+|+.|. ++..+...-+|
T Consensus 285 -AE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~~~ 318 (596)
T KOG4360|consen 285 -AECMQMLHEAEEELKCLRSCDAPKLISQEALSHG 318 (596)
T ss_pred -HHHHHHHHHHHHHHHhhccCCCcchhHHHHHHhh
Confidence 555556667777777773 44444444444
No 400
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=93.82 E-value=9.2 Score=41.60 Aligned_cols=11 Identities=36% Similarity=0.410 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 000940 613 KKVEELEKEIL 623 (1216)
Q Consensus 613 kKL~ELeaEi~ 623 (1216)
.++.+.+.+..
T Consensus 38 ~i~~~A~~eAe 48 (201)
T PF12072_consen 38 QILEEAEREAE 48 (201)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 401
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=93.81 E-value=3 Score=49.79 Aligned_cols=65 Identities=14% Similarity=0.281 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY 675 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE-~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~ 675 (1216)
+...+.++-.++......++ .+++.+.|.+..+++++..|..+.+||+....+|+.|+..+-.+.
T Consensus 254 l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~ 319 (421)
T KOG2685|consen 254 LDQTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKE 319 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccc
Confidence 45666666777766667777 788888899999999999999999999999999998877776544
No 402
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=93.80 E-value=0.81 Score=57.79 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=26.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~ 708 (1216)
.+++.++.|+...+...+.|..|+.+++.++..+.++..++..++..+++
T Consensus 224 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~ 273 (670)
T KOG0239|consen 224 DLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQE 273 (670)
T ss_pred hHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555555555555555555555554
No 403
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=93.77 E-value=1.5 Score=55.50 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHh---cCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHhhCcccCcccccccccC
Q 000940 695 IQEKKMELYQAILKME---GESGDGTLQQHADHIQNELE-ELVKILNDRCKQYGLRAKPTLLVELPFG 758 (1216)
Q Consensus 695 iQ~Q~~eLqaALa~lE---~r~eda~LQeRlk~iQ~kL~-eLEKaL~earkq~GL~aK~~~~vElp~g 758 (1216)
++++++-+.+.+.++- ...-+..||+++..++.+++ +|+.++ +-.||..+.....|+..+
T Consensus 576 ~kek~ea~~aev~~~g~s~~~~~~~~lkeki~~~~~Ei~~eie~v~----~S~gL~~~~~~k~e~a~~ 639 (762)
T PLN03229 576 IKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVL----KSMGLEVIGVTKKNKDTA 639 (762)
T ss_pred HHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHHHHHHHHHH----hccCchhhhhhhhhhccc
Confidence 6666666666555522 22345789999999998887 666655 467888775556666664
No 404
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=93.75 E-value=5 Score=46.65 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=10.9
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHH
Q 000940 605 LKEATE-ADKKVEELEKEILTSR 626 (1216)
Q Consensus 605 rqEAeE-~dkKL~ELeaEi~~lr 626 (1216)
|+++.+ ++--|+++++.+...+
T Consensus 107 Rkea~~~fqvtL~diqktla~~~ 129 (391)
T KOG1850|consen 107 RKEAVEQFQVTLKDIQKTLAEGR 129 (391)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcc
Confidence 334443 5555555555554433
No 405
>PF14282 FlxA: FlxA-like protein
Probab=93.75 E-value=0.25 Score=48.67 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 674 KYKQSGDVASKLTLEEATFRDIQEKKMELYQA 705 (1216)
Q Consensus 674 ~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaA 705 (1216)
+..++..|+.+|+.|+++|+.++.++.+....
T Consensus 49 k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 49 KQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666666554433
No 406
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.72 E-value=0.12 Score=62.97 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=68.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHHH
Q 000940 424 SQSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYL 501 (1216)
Q Consensus 424 ~~~~~~Wp~LS~eEk~ey~eaF~~fDkDgDG~ISgdELr~~fl--gs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~L 501 (1216)
.+...+. +|++++...++..|..+|.|+.|+++.+++..+|. .-+.+++.+.++..++|.+.+|++...||...|.-
T Consensus 579 ~~~~~~i-~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 579 SQMSIPI-KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred ccccccc-ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 3455556 79999999999999999999999999999999994 44799999999999999999999999999865544
Q ss_pred HH
Q 000940 502 ME 503 (1216)
Q Consensus 502 I~ 503 (1216)
+.
T Consensus 658 ~~ 659 (680)
T KOG0042|consen 658 IK 659 (680)
T ss_pred Hh
Confidence 43
No 407
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.71 E-value=0.018 Score=73.79 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=0.0
Q ss_pred ccccccCcccCcccccchhccchhcccccccchhhhhhhcccc
Q 000940 752 LVELPFGWQPGIQEGTADWDEDWDKLEDEGFTFVKELTLEVQN 794 (1216)
Q Consensus 752 ~vElp~g~~~~~qe~a~~w~edw~~~~d~gf~~~~~~t~~~~~ 794 (1216)
..+|---|.... -...+|....-++.. -+|||...+..
T Consensus 555 l~eLe~~ld~~n-~~~~e~~k~~kk~q~----qlkdlq~~lee 592 (859)
T PF01576_consen 555 LNELEIQLDHAN-RANEEAQKQLKKLQA----QLKDLQRELEE 592 (859)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHh-HhHHHHHHHHHHHHH----HHHHHhhhhHH
Confidence 555555555333 233344444444433 56677666653
No 408
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=93.71 E-value=4.1 Score=44.35 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 000940 719 QQHADHIQNELEE 731 (1216)
Q Consensus 719 QeRlk~iQ~kL~e 731 (1216)
++.|..+..+|+.
T Consensus 157 ~~QL~~Ar~D~~~ 169 (188)
T PF05335_consen 157 QRQLQAARADYEK 169 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 409
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=93.70 E-value=1.7 Score=53.86 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHH
Q 000940 626 REKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYE 672 (1216)
Q Consensus 626 rqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYE 672 (1216)
+++++.|++++.+|.-.+=+.-.+|...++++.++++|++..+.+|+
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~ 236 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIK 236 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788777776654222222344455555555555544444443
No 410
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=93.67 E-value=0.51 Score=57.46 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 000940 719 QQHADHIQNELEELV 733 (1216)
Q Consensus 719 QeRlk~iQ~kL~eLE 733 (1216)
+++|..++.+|..|.
T Consensus 158 ~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 158 EKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHhhc
Confidence 444444444444443
No 411
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=93.66 E-value=1.3 Score=50.25 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 679 GDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1216)
Q Consensus 679 sELqsqIA~lEaeLqDiQ~Q~~eLqaALa 707 (1216)
.+.++++...+++|+.+++++...++++.
T Consensus 185 ~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 185 KEKRAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344444445555555555544444444
No 412
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.65 E-value=2.6 Score=53.08 Aligned_cols=127 Identities=17% Similarity=0.276 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-cCCCCc-cH---HHHHH
Q 000940 650 LNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDI-QEKKMELYQAILKME-GESGDG-TL---QQHAD 723 (1216)
Q Consensus 650 Lnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDi-Q~Q~~eLqaALa~lE-~r~eda-~L---QeRlk 723 (1216)
|...++.+..-|+.++.-+..|+.+.+-|.+..-.-+..=-++++. +--..++-+|++.++ .+.++- .+ -++-+
T Consensus 350 LsA~~E~~~~~r~~~~~~~~~~~aLv~~l~~aAP~~A~~~L~~~~~~~~~~dE~~AA~E~L~~~~~~~~~~~~~A~d~~~ 429 (1104)
T COG4913 350 LSAKREGAVDKRRTISTARAGLDALVKGLGGAAPESAEELLELNNAARLTVDEYPAAREALESAGQRNVEDRTRAVDEFK 429 (1104)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCCcccHHHHHHHHHHHHHhHhhhHHHHHHHHhccccchHHHHHHHHHHH
Confidence 4444455555666666666666665554433221111111122222 222456666777666 333331 00 01111
Q ss_pred HHHHHHHHH-----------HHHHHHHHHhhCcccCcccccccccCcccCcccccchhccchhcccccccc
Q 000940 724 HIQNELEEL-----------VKILNDRCKQYGLRAKPTLLVELPFGWQPGIQEGTADWDEDWDKLEDEGFT 783 (1216)
Q Consensus 724 ~iQ~kL~eL-----------EKaL~earkq~GL~aK~~~~vElp~g~~~~~qe~a~~w~edw~~~~d~gf~ 783 (1216)
-+-++|.-| -..+...|+-+|+++. .|||+=+ -||-++++|.---..+ =-||.
T Consensus 430 a~~~El~SL~k~~SNI~~~~l~vR~~LC~~L~v~~~-----~mPFAGE-LI~~~~~~WE~~~qRi-L~GF~ 493 (1104)
T COG4913 430 AADQELSSLSKGSSNIEYRLLQVRENLCQDLGVSPR-----DMPFAGE-LIDPNNAEWEPVVQRI-LGGFA 493 (1104)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHcCCChh-----hCCcccc-ccCCCcccchHHHHHH-hhhch
Confidence 112223222 3556678999998764 5899877 7888999997543344 45665
No 413
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.63 E-value=1.2 Score=49.20 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 663 EVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQA 705 (1216)
Q Consensus 663 EiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaA 705 (1216)
++++++.+++.+.++.+.|++++..+.++.-+++.+..+|+..
T Consensus 164 e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 164 EYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 3333333333333334444444444444444444444444443
No 414
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.63 E-value=2.1 Score=53.11 Aligned_cols=122 Identities=21% Similarity=0.225 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHH-------HH---HHHHHHHHHH
Q 000940 608 ATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVE-------LL---AKKYEEKYKQ 677 (1216)
Q Consensus 608 AeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE-------~L---r~kYEE~~kQ 677 (1216)
..+++.++.++...+.+.-.+++-...+++..-....-.-++|+++.+|+..++.-.. .| +.++.++..+
T Consensus 257 ~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~ 336 (557)
T COG0497 257 LSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQ 336 (557)
T ss_pred hhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4445556666655555544444444444333332333333446666666554443322 22 2222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH-HHHHHHHHHHHHhhCc
Q 000940 678 SGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNEL-EELVKILNDRCKQYGL 745 (1216)
Q Consensus 678 IsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL-~eLEKaL~earkq~GL 745 (1216)
+......+..||.+++.++.++.+.-.+|.. +..+. ++|++.+.+-.|.++|
T Consensus 337 L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~----------------~R~~~A~~L~~~v~~eL~~L~M 389 (557)
T COG0497 337 LDNSEESLEALEKEVKKLKAELLEAAEALSA----------------IRKKAAKELEKEVTAELKALAM 389 (557)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhcCC
Confidence 3333333444455555555554444444443 33333 3788888888888887
No 415
>PRK09343 prefoldin subunit beta; Provisional
Probab=93.61 E-value=1.7 Score=43.77 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000940 618 LEKEILTSREKIQFCSTKMQELILYKSRCD 647 (1216)
Q Consensus 618 LeaEi~~lrqEIE~lrtQmQEL~m~kqR~e 647 (1216)
+..++++.-.+++.++.+++.+.+.++..+
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le 34 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQID 34 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554444433
No 416
>PRK14011 prefoldin subunit alpha; Provisional
Probab=93.58 E-value=1.6 Score=45.56 Aligned_cols=36 Identities=6% Similarity=0.059 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000940 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDN 648 (1216)
Q Consensus 613 kKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~ed 648 (1216)
.+|.++..++..++++++.|+..++.|.+..++...
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~ 38 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLK 38 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777777777777776666544
No 417
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.57 E-value=0.02 Score=71.99 Aligned_cols=10 Identities=30% Similarity=0.770 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 000940 613 KKVEELEKEI 622 (1216)
Q Consensus 613 kKL~ELeaEi 622 (1216)
+++.+++.++
T Consensus 93 ~~~~~l~~~~ 102 (722)
T PF05557_consen 93 KELRELQRQL 102 (722)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 418
>PF13166 AAA_13: AAA domain
Probab=93.55 E-value=3.3 Score=52.00 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH----------HHHHHHHHhhCcc
Q 000940 690 ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV----------KILNDRCKQYGLR 746 (1216)
Q Consensus 690 aeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLE----------KaL~earkq~GL~ 746 (1216)
..+..++.++.+++.+|..++... ..+++.+..++.+|.+|+ +.+++.++.+|+.
T Consensus 410 ~~i~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g~~ 474 (712)
T PF13166_consen 410 EDIEEYQKEIKELEKEINSLEKKL--KKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLGFS 474 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 344444455555555555544332 234455555555555443 5566667777654
No 419
>COG5293 Predicted ATPase [General function prediction only]
Probab=93.53 E-value=1.5 Score=52.71 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 690 ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 741 (1216)
Q Consensus 690 aeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~eark 741 (1216)
+++.+=-++......+|.+ .|. ..||++|..|+.+|.+++..+++..+
T Consensus 316 g~Vkk~~e~v~~F~r~~~e--~R~--~yl~~ei~~i~~dLk~~n~~~~~l~~ 363 (591)
T COG5293 316 GQVKKDFEHVIAFNRAITE--ERH--DYLQEEIAEIEGDLKEVNAELDDLGK 363 (591)
T ss_pred HHHHHhHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455554 444 56888888888887777655555544
No 420
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=1.6 Score=45.68 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000940 689 EATFRDIQEKKMELYQAILKM 709 (1216)
Q Consensus 689 EaeLqDiQ~Q~~eLqaALa~l 709 (1216)
+.++..+++++++|..++.++
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l 113 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKL 113 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777776666663
No 421
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=93.46 E-value=2.7 Score=49.09 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 000940 689 EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGL 745 (1216)
Q Consensus 689 EaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~earkq~GL 745 (1216)
|..|.....+...|.+.|...+.+. ..||+.+.-+..-+.+||.-++-.|-...|
T Consensus 244 ek~i~EfdiEre~LRAel~ree~r~--K~lKeEmeSLkeiVkdlEA~hQh~~pNeqL 298 (561)
T KOG1103|consen 244 EKLIEEFDIEREFLRAELEREEKRQ--KMLKEEMESLKEIVKDLEADHQHLRPNEQL 298 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhhhhhcCccccc
Confidence 3455555666666666666655444 455555555555555555555555544333
No 422
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.46 E-value=0.62 Score=59.06 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC----------ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 689 EATFRDIQEKKMELYQAILKMEGESGD----------GTLQQHADHIQNELEELVKILNDRCK 741 (1216)
Q Consensus 689 EaeLqDiQ~Q~~eLqaALa~lE~r~ed----------a~LQeRlk~iQ~kL~eLEKaL~eark 741 (1216)
..+|..+|++++.|.+.|..++.++.. ...+..+.+++.+|..++|..+-..+
T Consensus 565 ~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLke 627 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKE 627 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888888754421 22344566666666666655444444
No 423
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=93.44 E-value=0.92 Score=43.19 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 678 SGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 678 IsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
+.+|+.++..++.+++++..++.+++.++..++
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~ 39 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLRELELTLEELE 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444
No 424
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.43 E-value=7.2 Score=45.29 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 000940 676 KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILND 738 (1216)
Q Consensus 676 kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~e 738 (1216)
+++..+..+|..+|-+-...+.++..-..+|.+|-... ..+.+.+..++.+++.|++.+..
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer--~~~~~~~~~~~~k~~kLe~LcRa 304 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEER--QKLEKELEKLKKKIEKLEKLCRA 304 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566667777788888888888888888877544 45677788888888888766543
No 425
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=93.31 E-value=3.4 Score=51.62 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=22.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh--cCCCCccHHHH
Q 000940 679 GDVASKLTLE-EATFRDIQEKKMELYQAILKME--GESGDGTLQQH 721 (1216)
Q Consensus 679 sELqsqIA~l-EaeLqDiQ~Q~~eLqaALa~lE--~r~eda~LQeR 721 (1216)
.+|..++..+ ++...+|+..+++.++-| ++| +.-+++.||+|
T Consensus 392 ~el~~ql~~qa~ah~dhik~vvr~q~q~~-~~e~~~~~~e~~l~er 436 (657)
T KOG1854|consen 392 NELRNQLKRQAKAHLDHIKDVVRQQEQLL-TIEFKQKLEEAVLQER 436 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHh
Confidence 4444444443 456666776666544433 333 33355667766
No 426
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=93.24 E-value=0.41 Score=50.09 Aligned_cols=64 Identities=13% Similarity=0.273 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 678 SGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 741 (1216)
Q Consensus 678 IsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~eark 741 (1216)
+.++...|..++.+++.++.++..|+.+|..+...-.++.|...|.++..++.+|+..|...+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444455555555555555555555555555555555555555555555555554
No 427
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=93.22 E-value=5.7 Score=47.08 Aligned_cols=68 Identities=10% Similarity=0.152 Sum_probs=31.4
Q ss_pred HHHHhhhhHHHHHHHHHHH----hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 640 ILYKSRCDNRLNEITERVS----GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1216)
Q Consensus 640 ~m~kqR~edeLnei~eEvs----~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa 707 (1216)
..+..+...++....++|. -+...++.|.++|.+.+.++++++.++..+.+.+....++++++.+.|.
T Consensus 240 ~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe 311 (359)
T PF10498_consen 240 KSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELE 311 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443 2333333445555555555555555555555555555555554444444
No 428
>PTZ00464 SNF-7-like protein; Provisional
Probab=93.19 E-value=8.8 Score=42.47 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000940 689 EATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 689 EaeLqDiQ~Q~~eLqaALa~ 708 (1216)
-.++++...+..+++++|..
T Consensus 130 ~Dei~E~~e~~~EI~e~Ls~ 149 (211)
T PTZ00464 130 QDELADLYEDTQEIQEIMGR 149 (211)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 34556666666666666664
No 429
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=93.18 E-value=3.7 Score=48.67 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=16.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH
Q 000940 716 GTLQQHADHIQNELEELVKILN 737 (1216)
Q Consensus 716 a~LQeRlk~iQ~kL~eLEKaL~ 737 (1216)
+.++.++++++.+|.+++..+.
T Consensus 230 ~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 230 ETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5567778888888888777764
No 430
>PF15294 Leu_zip: Leucine zipper
Probab=93.17 E-value=0.66 Score=52.89 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 676 KQSGDVASKLTLEEATFRDIQEKKMELYQAI 706 (1216)
Q Consensus 676 kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaAL 706 (1216)
+++.+|+.+++.++.+|..........+.+|
T Consensus 190 q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L 220 (278)
T PF15294_consen 190 QDLSDLENKMAALKSELEKALQDKESQQKAL 220 (278)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777776655554444444333333
No 431
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=93.17 E-value=0.88 Score=50.00 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 683 SKLTLEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 683 sqIA~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
.+|..||.++.++-.+.-+++.|+..|+
T Consensus 175 ~~L~~Le~~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 175 EELRYLEQRWKELVSKNLEIEVACEELE 202 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555565555555555555544
No 432
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=93.16 E-value=3.9 Score=46.25 Aligned_cols=115 Identities=21% Similarity=0.203 Sum_probs=54.7
Q ss_pred HHHhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000940 588 HLMDQLSKEEQESLNAKLKEATEADKKVEELEKEI------------LTSREKIQFCSTKMQELILYKSRCDNRLNEITE 655 (1216)
Q Consensus 588 ~lL~ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi------------~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~e 655 (1216)
.||.-..+..-.+++. |.++-+.||+|++.++ -.|..+-..|..+-+||=++.+ +-+|-++..
T Consensus 169 ~llDPAinl~F~rlK~---ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s--~Gria~Le~ 243 (330)
T KOG2991|consen 169 TLLDPAINLFFLRLKG---ELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQAS--EGRIAELEI 243 (330)
T ss_pred HhhChHHHHHHHHHHH---HHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhh--cccHHHHHH
Confidence 3444444555555654 4555558999998887 2233333333333333333332 223444444
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 656 RVSGDKREVELLAKKYEEKYKQSGDVA--------------SKLTLEEATFRDIQEKKMELYQAIL 707 (1216)
Q Consensus 656 Evs~lKrEiE~Lr~kYEE~~kQIsELq--------------sqIA~lEaeLqDiQ~Q~~eLqaALa 707 (1216)
+++=.|..-++|+...+++++-+.+|. .+|...+.+|+.+++-++++.+++.
T Consensus 244 eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~ 309 (330)
T KOG2991|consen 244 ELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVG 309 (330)
T ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444445444444444444443 3344444444444444444444443
No 433
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=93.16 E-value=9 Score=43.53 Aligned_cols=29 Identities=3% Similarity=0.001 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 681 VASKLTLEEATFRDIQEKKMELYQAILKM 709 (1216)
Q Consensus 681 LqsqIA~lEaeLqDiQ~Q~~eLqaALa~l 709 (1216)
++..++.++..+..+++.+...-.++..+
T Consensus 121 ~~~~~~~~~~~~~KaK~~Y~~~c~e~e~~ 149 (269)
T cd07673 121 AVQNIQSITQALQKSKENYNAKCLEQERL 149 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666555544443
No 434
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.13 E-value=4.8 Score=48.71 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSR---EKIQFCSTKMQELILY-------KSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGD 680 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lr---qEIE~lrtQmQEL~m~-------kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsE 680 (1216)
+++||.|||.++.+.+ +=|.-|+.++.+|.-. ++..++.|+++.+-++.-++.+++-|.+-+.++.|+..
T Consensus 343 Le~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK 422 (527)
T PF15066_consen 343 LEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKK 422 (527)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8899999999873332 3344566666655533 33333334444333334444444433333333333333
Q ss_pred HH
Q 000940 681 VA 682 (1216)
Q Consensus 681 Lq 682 (1216)
+.
T Consensus 423 ~k 424 (527)
T PF15066_consen 423 IK 424 (527)
T ss_pred Hh
Confidence 33
No 435
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=93.12 E-value=11 Score=40.22 Aligned_cols=92 Identities=15% Similarity=0.290 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 616 EELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELL-AKKYEEKYKQSGDVASKLTLEEATFRD 694 (1216)
Q Consensus 616 ~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~L-r~kYEE~~kQIsELqsqIA~lEaeLqD 694 (1216)
....+++..++++++.++.++.++....-+++.+-.....++...-+....- +..+-+.+-+..+|+-+|+.++.+-.+
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~q 102 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQ 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444444444433333333333333333221 222223333444444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 000940 695 IQEKKMELYQAIL 707 (1216)
Q Consensus 695 iQ~Q~~eLqaALa 707 (1216)
++.+-.+|+..|.
T Consensus 103 Lr~rRD~LErrl~ 115 (159)
T PF05384_consen 103 LRERRDELERRLR 115 (159)
T ss_pred HHHHHHHHHHHHH
Confidence 4444433333333
No 436
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=93.12 E-value=0.69 Score=46.02 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000940 617 ELEKEILTSREKIQFCSTKMQELILYKSRCDN 648 (1216)
Q Consensus 617 ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~ed 648 (1216)
++.+++..++++++.+..++.+|.....++..
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~ 34 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELET 34 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666555555554433
No 437
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=93.10 E-value=0.9 Score=50.19 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 646 CDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 646 ~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~ 708 (1216)
.+.+.+.+.+++..++.|+++..+++|..++++.+|..+...+..++..+.++++.|+++|+-
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 344556677777778888888888888888888888888888878888888888888877753
No 438
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=93.08 E-value=3.2 Score=55.40 Aligned_cols=11 Identities=9% Similarity=0.121 Sum_probs=5.3
Q ss_pred cchhccccccc
Q 000940 772 EDWDKLEDEGF 782 (1216)
Q Consensus 772 edw~~~~d~gf 782 (1216)
.-|=++..+++
T Consensus 1092 ~~~ie~~tt~~ 1102 (1294)
T KOG0962|consen 1092 KALIELKTTEL 1102 (1294)
T ss_pred HHHHHHHHHHH
Confidence 33555555554
No 439
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=93.08 E-value=8.3 Score=42.34 Aligned_cols=66 Identities=20% Similarity=0.282 Sum_probs=35.7
Q ss_pred HHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHH
Q 000940 601 LNAKLKEAT----EADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVEL 666 (1216)
Q Consensus 601 ln~~rqEAe----E~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~ 666 (1216)
+..++.|++ +....+.-++...+.+.++++.+..|+.+-.+-...++....++.-.+.=...++|+
T Consensus 30 a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~ 99 (205)
T KOG1003|consen 30 ALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELER 99 (205)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344455554 233445555566666666666666666666555555555555555554434444443
No 440
>PF14992 TMCO5: TMCO5 family
Probab=93.07 E-value=2.1 Score=49.04 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=16.1
Q ss_pred CCccHHHHHHHHHHHHH--HHHHHHHHH
Q 000940 714 GDGTLQQHADHIQNELE--ELVKILNDR 739 (1216)
Q Consensus 714 eda~LQeRlk~iQ~kL~--eLEKaL~ea 739 (1216)
+-..||+.|+++..+.+ -|++.+..+
T Consensus 152 ~i~klkE~L~rmE~ekE~~lLe~el~k~ 179 (280)
T PF14992_consen 152 EIKKLKEKLRRMEEEKEMLLLEKELSKY 179 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888887555 345554443
No 441
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=93.06 E-value=1.7 Score=51.84 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 000940 624 TSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY 675 (1216)
Q Consensus 624 ~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~ 675 (1216)
.-+++++.+|..+|.|....--++.-|+=|.+.+.+...|++.|+.+|-+..
T Consensus 476 a~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~ 527 (583)
T KOG3809|consen 476 AEREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNE 527 (583)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhH
Confidence 3455788888888888887777777777788888899999999988886433
No 442
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=93.05 E-value=0.67 Score=43.20 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 649 RLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 649 eLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
.|.+..++|+.|..|-+.|..+--.....|..|..++..+|.++..++.++..++..+..++
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666554443334455555555556666666666655555555555543
No 443
>PF15556 Zwint: ZW10 interactor
Probab=93.04 E-value=4 Score=44.88 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 605 LKEATEADKKVEELEKEILTSREKIQ 630 (1216)
Q Consensus 605 rqEAeE~dkKL~ELeaEi~~lrqEIE 630 (1216)
|+.+.++..+-.||.+.|+..-+-|.
T Consensus 58 Rqkai~aKeQWKeLKAtYqehVEaIk 83 (252)
T PF15556_consen 58 RQKAIEAKEQWKELKATYQEHVEAIK 83 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566677777777755444433
No 444
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=93.03 E-value=1.9 Score=48.88 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000940 726 QNELEELVKILNDRCKQ 742 (1216)
Q Consensus 726 Q~kL~eLEKaL~earkq 742 (1216)
+.+|.+++..+.++..+
T Consensus 185 ~~~i~~~~~~l~~a~~~ 201 (334)
T TIGR00998 185 QPAVQEAKERLKTAWLA 201 (334)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44566666555554443
No 445
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=93.03 E-value=11 Score=38.65 Aligned_cols=85 Identities=15% Similarity=0.168 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 000940 622 ILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL--TLEEATFRDIQEKK 699 (1216)
Q Consensus 622 i~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqI--A~lEaeLqDiQ~Q~ 699 (1216)
+..+.+.++.+..+..+|...+-..+.+|.+++.++..+-.++..|+.+|+++.++..++.... ..+-+.|+.+-.+.
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~ 108 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEA 108 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555667888888888888888888888888888887775442 22333444444444
Q ss_pred HHHHHHH
Q 000940 700 MELYQAI 706 (1216)
Q Consensus 700 ~eLqaAL 706 (1216)
.+...+|
T Consensus 109 eeeSe~l 115 (150)
T PF07200_consen 109 EEESEEL 115 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4333344
No 446
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=92.99 E-value=1.5 Score=44.85 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=11.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEE 689 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lE 689 (1216)
.++.+++.++.++.+...++..|..+...++
T Consensus 52 ~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~ 82 (150)
T PF07200_consen 52 SLEPELEELRSQLQELYEELKELESEYQEKE 82 (150)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333333
No 447
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=92.99 E-value=4.7 Score=43.13 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=41.7
Q ss_pred HHhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHhc-HHHHHH
Q 000940 589 LMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITER-VSGD-KREVEL 666 (1216)
Q Consensus 589 lL~ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eE-vs~l-KrEiE~ 666 (1216)
++.-+.......+... -+..+.|+++.-+. ++++-+++++..++|+....+.-.+++.+.++ +..+ +...+.
T Consensus 9 v~da~w~~~~~sls~~----~~~~kqve~~~l~~--lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~ 82 (165)
T PF09602_consen 9 VMDAFWKQWSQSLSLF----ASFMKQVEQQTLKK--LKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNS 82 (165)
T ss_pred HHHHHHHHHHHHHHHH----HHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666531 22234444433333 44555556666666665555444444444333 2233 222333
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000940 667 LAKKYEEKYKQSGDVASKL 685 (1216)
Q Consensus 667 Lr~kYEE~~kQIsELqsqI 685 (1216)
|...|.+.+.++.+|..+|
T Consensus 83 l~d~inE~t~k~~El~~~i 101 (165)
T PF09602_consen 83 LNDSINEWTDKLNELSAKI 101 (165)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 448
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=92.98 E-value=0.91 Score=55.25 Aligned_cols=129 Identities=15% Similarity=0.193 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 000940 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDV--ASKLTLEEA 690 (1216)
Q Consensus 613 kKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsEL--qsqIA~lEa 690 (1216)
.-+.+|++++..++...+.+...+--|.........+++-...++..+++|+...-.--|+...+.+.+ +.+++.+..
T Consensus 20 ~~~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l~~ev~~~~~~peke~~~~~~~~~~n~m~~lD~ 99 (531)
T PF15450_consen 20 QWVAELQAEVACLRGHKERCERATLSLLRELLQVRARVQLQDSELMQLRQEVKQRAQVPEKEACEPSSIQNQNQMQQLDK 99 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCCCccchhhHHhhhH
Confidence 455677777777666666555554444433333333344444445555555554322222111223333 344455555
Q ss_pred HHHHHHHHHHHHHH--HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 691 TFRDIQEKKMELYQ--AILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 741 (1216)
Q Consensus 691 eLqDiQ~Q~~eLqa--ALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~eark 741 (1216)
.|.++++++.+|.. ++++.+..+....+-.||..++..|.+-++.+..+|-
T Consensus 100 rLvevre~L~~irr~q~~q~~erk~~~qe~~~rl~~L~~~Lrqee~~re~a~~ 152 (531)
T PF15450_consen 100 RLVEVREALTQIRRKQALQDSERKGSEQEAGLRLSKLQDMLRQEEQGREDACS 152 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 55555555555443 3333344444455666777777777777777776665
No 449
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=1.3 Score=45.09 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 679 GDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 679 sELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
.-|+-+|..+|-+-.++++++.+|+.+|.++-
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555566666666666665544
No 450
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=92.91 E-value=5 Score=39.77 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 670 KYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1216)
Q Consensus 670 kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa 707 (1216)
++++..+...+....|..+.++|..++.++..++..|.
T Consensus 68 ~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 68 RAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444443
No 451
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=92.88 E-value=2.8 Score=49.08 Aligned_cols=6 Identities=0% Similarity=0.451 Sum_probs=2.6
Q ss_pred hhhhhh
Q 000940 784 FVKELT 789 (1216)
Q Consensus 784 ~~~~~t 789 (1216)
++.||.
T Consensus 204 il~dLa 209 (332)
T TIGR01541 204 VLSDIA 209 (332)
T ss_pred HHHHHH
Confidence 444443
No 452
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=92.87 E-value=4.6 Score=46.12 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=29.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~ 708 (1216)
..+.|++.++.++.+..++++++..+|..+.+.|.+++.+-..|...+..
T Consensus 204 ~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~ 253 (269)
T PF05278_consen 204 LKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKS 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555666666666666666666666666666655554
No 453
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=92.85 E-value=0.83 Score=55.24 Aligned_cols=16 Identities=25% Similarity=0.164 Sum_probs=10.8
Q ss_pred CcccCCCCCCCCcccc
Q 000940 965 SMFGLDDFNIKPIKTE 980 (1216)
Q Consensus 965 ~~f~~~~~~~~p~~~~ 980 (1216)
.=+=||++||+=|--+
T Consensus 346 LGWiSD~~GiPCIsGe 361 (472)
T TIGR03752 346 LGWISDPYGIPCISGE 361 (472)
T ss_pred ceeecCCCCCCCCCCc
Confidence 4466788888877433
No 454
>COG5283 Phage-related tail protein [Function unknown]
Probab=92.83 E-value=3.4 Score=54.63 Aligned_cols=75 Identities=19% Similarity=0.190 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 635 KMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKM 709 (1216)
Q Consensus 635 QmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~l 709 (1216)
+|+.|........--+.+..+++.++.+.++..++.|.+.-.|+..++..++.+-+++--..+|++-.+.+++++
T Consensus 58 k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~ 132 (1213)
T COG5283 58 KYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRL 132 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Confidence 555555444444444566666666677777777777777777777777666655555554444444444444443
No 455
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=92.82 E-value=1.6 Score=44.69 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 617 ELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRD 694 (1216)
Q Consensus 617 ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqD 694 (1216)
.+.++++...+.|..-|++++ ....+++..|++..+-.+.-+.++.+++..+++...++..++..+..||..|..
T Consensus 47 ~v~kql~~vs~~l~~tKkhLs---qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 47 SVSKQLEQVSESLSSTKKHLS---QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333332 223333333333333333334444444444444444444444444444444433
No 456
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=4 Score=45.51 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=5.1
Q ss_pred cchhccchhcc
Q 000940 767 TADWDEDWDKL 777 (1216)
Q Consensus 767 a~~w~edw~~~ 777 (1216)
||.|=+||=-|
T Consensus 150 ~a~wy~dyLGl 160 (246)
T KOG4657|consen 150 AASWYNDYLGL 160 (246)
T ss_pred HHHHHHHhcCc
Confidence 34555545433
No 457
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=92.79 E-value=0.031 Score=70.27 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=0.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDVASKLTL---EEATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsELqsqIA~---lEaeLqDiQ~Q~~eLqaALa~ 708 (1216)
.+|+.++.|+.+......++..|+.++.. ++.+|...+.++.+|+..+.+
T Consensus 329 ~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 329 DLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSE 381 (713)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433333333333333322 233444444444444444444
No 458
>PF14992 TMCO5: TMCO5 family
Probab=92.77 E-value=1.2 Score=50.91 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000940 684 KLTLEEATFRDIQEKKMELYQAILKME 710 (1216)
Q Consensus 684 qIA~lEaeLqDiQ~Q~~eLqaALa~lE 710 (1216)
.++..+..++.+.+.+..++..|++++
T Consensus 110 ~lq~sk~~lqql~~~~~~qE~ei~kve 136 (280)
T PF14992_consen 110 SLQFSKNKLQQLLESCASQEKEIAKVE 136 (280)
T ss_pred ccHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554
No 459
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=92.77 E-value=4.8 Score=48.54 Aligned_cols=7 Identities=14% Similarity=0.686 Sum_probs=4.0
Q ss_pred ccccchh
Q 000940 779 DEGFTFV 785 (1216)
Q Consensus 779 d~gf~~~ 785 (1216)
..||++|
T Consensus 393 ~RGYai~ 399 (432)
T TIGR00237 393 ARGYSIA 399 (432)
T ss_pred cCceEEE
Confidence 4566655
No 460
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=92.75 E-value=6.2 Score=39.15 Aligned_cols=69 Identities=23% Similarity=0.163 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 632 CSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKM 700 (1216)
Q Consensus 632 lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~ 700 (1216)
|+.+-+.|.....+.+.=|.+...+.....+.++.-.....+...+|..|...|..+...+..+..++.
T Consensus 37 L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 37 LEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444443443333333333333333333333334444444444444444444444433
No 461
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=92.74 E-value=19 Score=39.83 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=12.8
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHH
Q 000940 440 KYTKVFVQVDIDRDGKITGEQAYNLF 465 (1216)
Q Consensus 440 ey~eaF~~fDkDgDG~ISgdELr~~f 465 (1216)
.|..++..++ +|.-..+++..+|
T Consensus 6 ~~~~l~~~~~---~g~~~~~~l~~f~ 28 (251)
T cd07653 6 QFDNLEKHTQ---KGIDFLERYGKFV 28 (251)
T ss_pred hhHHHHHHHH---HhHHHHHHHHHHH
Confidence 4445555554 4555566666666
No 462
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=92.72 E-value=6.1 Score=44.95 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcccCcc
Q 000940 718 LQQHADHIQNELEELVKILNDRCKQYGLRAKPT 750 (1216)
Q Consensus 718 LQeRlk~iQ~kL~eLEKaL~earkq~GL~aK~~ 750 (1216)
.+..++.++.+|+..+..|. +.-|.|--.
T Consensus 184 ~~~~~~~~~~~l~~a~~~l~----~~~i~AP~d 212 (327)
T TIGR02971 184 AQAEVKSALEAVQQAEALLE----LTYVKAPID 212 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHh----cCEEECCCC
Confidence 34556666666665544443 234555433
No 463
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=92.70 E-value=2.5 Score=50.00 Aligned_cols=56 Identities=14% Similarity=0.286 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH
Q 000940 677 QSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILN 737 (1216)
Q Consensus 677 QIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~ 737 (1216)
+..+....|..+|....+++.++.+.++.|.+++.. +++-+..|+..++.||+-+.
T Consensus 330 ~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~-----~~~N~~~i~~n~~~le~Ri~ 385 (388)
T PF04912_consen 330 EAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK-----FKENMETIEKNVKKLEERIA 385 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh
Confidence 333333446666777777777777777777776643 55667777777777765443
No 464
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=92.70 E-value=1.8 Score=43.24 Aligned_cols=32 Identities=6% Similarity=0.170 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 676 KQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1216)
Q Consensus 676 kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa 707 (1216)
+.+..|++.+..++.+|+.++.++..++..++
T Consensus 94 ~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 94 KKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555444443
No 465
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=92.67 E-value=3.9 Score=46.60 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhC
Q 000940 438 VQKYTKVFVQVD 449 (1216)
Q Consensus 438 k~ey~eaF~~fD 449 (1216)
...++.+|..|.
T Consensus 175 e~rlr~a~eafg 186 (445)
T KOG2891|consen 175 EDRLRKAFEAFG 186 (445)
T ss_pred HHHHHHHHHHhc
Confidence 356677777663
No 466
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=92.61 E-value=4 Score=41.68 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 664 VELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKK 699 (1216)
Q Consensus 664 iE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~ 699 (1216)
+..|...+.+....|..++..+......+..+..+.
T Consensus 73 i~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~ 108 (147)
T PRK05689 73 LQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRL 108 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333444333333
No 467
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=92.61 E-value=6.3 Score=42.69 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=16.7
Q ss_pred HhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 000940 643 KSRCDNRLNEITERVSGDKREVELLAKKYEEK 674 (1216)
Q Consensus 643 kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~ 674 (1216)
+......|.....+++-|.+.++-.+.-++..
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~a 90 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESA 90 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555554443
No 468
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.60 E-value=7.1 Score=43.06 Aligned_cols=83 Identities=24% Similarity=0.265 Sum_probs=47.9
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQE------KKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 732 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~------Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eL 732 (1216)
..+||++.+.+.+++...+|.+...+|..+.-+|.+++. .+..|..-|.+--.|.|. ...|..+..+|++|
T Consensus 86 ~nlre~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi~r~nrqe~~~l~kvis~~p~RsEt---~k~l~el~keleel 162 (222)
T KOG3215|consen 86 MNLREIENLVQKKLEIERSIQKARNKIELLKKQLHEAKIVRLNRQEYSALSKVISDCPARSET---DKDLNELKKELEEL 162 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcchh---HHHHHHHHHHHHHH
Confidence 567888888777777777777777777777666655554 233333333322233322 23456666666666
Q ss_pred -------HHHHHHHHHhhC
Q 000940 733 -------VKILNDRCKQYG 744 (1216)
Q Consensus 733 -------EKaL~earkq~G 744 (1216)
+..|--||+|+-
T Consensus 163 ~~~~~s~~~klelrRkqf~ 181 (222)
T KOG3215|consen 163 DDLNNSTETKLELRRKQFK 181 (222)
T ss_pred HHHhhhhHHHHHHHhhcch
Confidence 344555555543
No 469
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=92.57 E-value=4.4 Score=51.56 Aligned_cols=103 Identities=23% Similarity=0.182 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 000940 607 EATEADKKVEELEKEILTSREKIQFCSTK----MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVA 682 (1216)
Q Consensus 607 EAeE~dkKL~ELeaEi~~lrqEIE~lrtQ----mQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELq 682 (1216)
..+.++.|-+||-+.++++++|-..|+.- =++|...++.++.|...|+-||.+.-.+++.++-++|+..|+-.-|.
T Consensus 449 ~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~ 528 (861)
T PF15254_consen 449 SQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILG 528 (861)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhh
Confidence 33445555555555555555554433332 23455555555555555555555555555555555555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 683 SKLTLEEATFRDIQEKKMELYQAILKM 709 (1216)
Q Consensus 683 sqIA~lEaeLqDiQ~Q~~eLqaALa~l 709 (1216)
-.|.--++++..+++=...||...+++
T Consensus 529 itlrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 529 ITLRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555443
No 470
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=4.3 Score=42.72 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000940 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDN 648 (1216)
Q Consensus 613 kKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~ed 648 (1216)
+++.++..++.+.+++.+...+++..|.-+..+-..
T Consensus 16 k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q 51 (148)
T COG2882 16 KEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQ 51 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666666666666666666555554443
No 471
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=92.54 E-value=0.25 Score=43.26 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=35.4
Q ss_pred cccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCccCHHHHHHHHH
Q 000940 455 KITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (1216)
Q Consensus 455 ~ISgdELr~~f--lgs~LpeeeL~qIW~LaDiD~DGkLdfdEFvvAM~ 500 (1216)
+++-.|++.+| +...+.++-...++..+|.+++|.|+.+||....+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 46788999999 46778888899999999999999999999985443
No 472
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=92.54 E-value=1.1 Score=48.55 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 000940 719 QQHADHIQNELEELVK 734 (1216)
Q Consensus 719 QeRlk~iQ~kL~eLEK 734 (1216)
|.+|+++|.+|.+|++
T Consensus 167 qaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 167 QAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 473
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.53 E-value=2.6 Score=46.26 Aligned_cols=42 Identities=24% Similarity=0.394 Sum_probs=34.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 600 SLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELIL 641 (1216)
Q Consensus 600 ~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m 641 (1216)
.+.-++.|++++.++..|++.+|+..+++++.++.++.++..
T Consensus 83 v~e~nlre~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi 124 (222)
T KOG3215|consen 83 VIEMNLREIENLVQKKLEIERSIQKARNKIELLKKQLHEAKI 124 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557788888899999999999999999999998876543
No 474
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=92.52 E-value=7 Score=39.91 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=17.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDVASKLTLE 688 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsELqsqIA~l 688 (1216)
.++..++.|..+++.+...+.+....|...
T Consensus 76 ~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~ 105 (213)
T cd00176 76 EIQERLEELNQRWEELRELAEERRQRLEEA 105 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666665555555554444
No 475
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=92.52 E-value=1.8 Score=45.48 Aligned_cols=16 Identities=6% Similarity=-0.078 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhCc
Q 000940 730 EELVKILNDRCKQYGL 745 (1216)
Q Consensus 730 ~eLEKaL~earkq~GL 745 (1216)
.-|+++|..+.+.++-
T Consensus 119 ~Gldeqi~~lkes~~y 134 (155)
T PF06810_consen 119 KGLDEQIKALKESDPY 134 (155)
T ss_pred ccHHHHHHHHHhcCch
Confidence 3355666666665543
No 476
>PRK12705 hypothetical protein; Provisional
Probab=92.50 E-value=10 Score=46.86 Aligned_cols=7 Identities=14% Similarity=0.159 Sum_probs=3.0
Q ss_pred Ccccccc
Q 000940 762 GIQEGTA 768 (1216)
Q Consensus 762 ~~qe~a~ 768 (1216)
+||--|.
T Consensus 185 aiqr~a~ 191 (508)
T PRK12705 185 AMQRIAS 191 (508)
T ss_pred HHHHhcc
Confidence 4444443
No 477
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.50 E-value=3.3 Score=52.12 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=32.8
Q ss_pred HHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 641 LYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRD 694 (1216)
Q Consensus 641 m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqD 694 (1216)
..++++..+|..+++++.+.+++-+.|+..+|.+..++.+|.++.+..+.++.+
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd 269 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELRD 269 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 355666666666666666666666666666666666666666544444433333
No 478
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=92.50 E-value=14 Score=40.12 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh--cCCCCccHHHHHHHHHHHHHHHHHHHH
Q 000940 691 TFRDIQEKKMELYQAILKME--GESGDGTLQQHADHIQNELEELVKILN 737 (1216)
Q Consensus 691 eLqDiQ~Q~~eLqaALa~lE--~r~eda~LQeRlk~iQ~kL~eLEKaL~ 737 (1216)
.++....++.++.+-...+- +......+|++|.++..+=+.|.+.|+
T Consensus 129 ~~~~~~~kI~EM~~vM~~ai~~de~~~~~~qe~i~qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 129 EVQSQAEKICEMAAVMRKAIELDEENSQEEQEIIAQLETENKGLRELLQ 177 (181)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcchhhhHhHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555544443332 222224556666666655555555543
No 479
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=92.49 E-value=2.2 Score=43.81 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 634 TKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (1216)
Q Consensus 634 tQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEa 690 (1216)
.+++.|-.+..++..-.+.+++++..++..++.++.+++.++..+..|+.+|.++|.
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333333333334456666667777777777777777777777777766653
No 480
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=92.45 E-value=20 Score=39.93 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000940 689 EATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 689 EaeLqDiQ~Q~~eLqaALa~ 708 (1216)
|...+.+..++.+|..++..
T Consensus 120 e~~~~~l~~~l~~l~~~~~~ 139 (247)
T PF06705_consen 120 EELNQELVRELNELQEAFEN 139 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666654
No 481
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=92.45 E-value=2.2 Score=51.53 Aligned_cols=24 Identities=4% Similarity=-0.017 Sum_probs=11.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDVA 682 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsELq 682 (1216)
..-.-|..|+.++-+++.++..|.
T Consensus 283 ~~~~lI~~Le~qLa~~~aeL~~L~ 306 (434)
T PRK15178 283 AIYQLIAGFETQLAEAKAEYAQLM 306 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555444444444443
No 482
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=92.45 E-value=4.3 Score=41.53 Aligned_cols=118 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH------HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNE------ITERVSGDKREVELLAKKYEEKYKQSGDVASK 684 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLne------i~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsq 684 (1216)
...+......++...+.+++....+++.|..+.....+.+.+ ...++.....=+..|...+.+....|..++..
T Consensus 14 ~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ 93 (146)
T PRK07720 14 KENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQ 93 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Q 000940 685 LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 732 (1216)
Q Consensus 685 IA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eL 732 (1216)
+......+...+.+.. .+.+|..+......++..+.=|..+||+
T Consensus 94 ve~~r~~~~ea~~~~k----~~ekLker~~~~~~~~e~r~EQk~~DE~ 137 (146)
T PRK07720 94 MNRKQQDLTEKNIEVK----KYEKMKEKKQEMFALEEKAAEMKEMDEI 137 (146)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=92.43 E-value=3.2 Score=52.65 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHH
Q 000940 648 NRLNEITERVSGDKREVELLAKKY 671 (1216)
Q Consensus 648 deLnei~eEvs~lKrEiE~Lr~kY 671 (1216)
-+|.+.++++.+..+++|.|+.++
T Consensus 1009 selEe~kKe~eaiineiee~eaeI 1032 (1424)
T KOG4572|consen 1009 SELEEKKKELEAIINEIEELEAEI 1032 (1424)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666665554
No 484
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=92.41 E-value=0.11 Score=60.14 Aligned_cols=13 Identities=23% Similarity=0.100 Sum_probs=5.0
Q ss_pred Cchhhhhhhhhcc
Q 000940 887 QSKEVQDFQIMKD 899 (1216)
Q Consensus 887 p~~~~~~~~~~k~ 899 (1216)
|+.-|+...|.-+
T Consensus 265 P~~~FQ~asFpvd 277 (326)
T PF04582_consen 265 PSHGFQAASFPVD 277 (326)
T ss_dssp --HHHHTS-EEEE
T ss_pred CchhccccCCceE
Confidence 4455665554433
No 485
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=92.40 E-value=3.2 Score=49.66 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH
Q 000940 689 EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKIL 736 (1216)
Q Consensus 689 EaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL 736 (1216)
+..|++.+.++..+.+.|.. ..-..+|++.+.+|++|++.|
T Consensus 326 ~~~L~~~~~~L~~l~~rL~~-------lsP~~~L~r~~qrL~~L~~rL 366 (438)
T PRK00286 326 ERRLRLAKQRLERLSQRLQQ-------QNPQRRIERAQQRLEQLEQRL 366 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhh-------cCHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555543 222333444444444444333
No 486
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=92.40 E-value=6.5 Score=37.78 Aligned_cols=31 Identities=6% Similarity=-0.112 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 678 SGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 678 IsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~ 708 (1216)
...|..++..++..+..++.-+..++.+|..
T Consensus 74 ~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~ 104 (127)
T smart00502 74 LKVLEQQLESLTQKQEKLSHAINFTEEALNS 104 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3555566666677777777767666666554
No 487
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=92.37 E-value=0.28 Score=59.47 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=0.0
Q ss_pred CcccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCH-----HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHH
Q 000940 5 TATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPK-----QVLAQVWSHADQRKAGFLNRAEFFNALKLVT 74 (1216)
Q Consensus 5 taee~~~Y~~vF~~lD~DgDGkISg~Ea~~fL~~SgLP~-----~~L~qIW~LAD~d~DG~LdrdEF~vAM~LVa 74 (1216)
|.+|.....+-|..+| |++|+|+-.++...|.+.+++- +++++|...++.|.+|.++++||+.++.-+.
T Consensus 14 tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 14 TQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred cHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
No 488
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.35 E-value=5.1 Score=46.82 Aligned_cols=141 Identities=11% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 000940 596 EEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY 675 (1216)
Q Consensus 596 Eee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~ 675 (1216)
|..+.+.+-+.-.+|-+....+|+.+-+++.+++-..+.-.-......++++.-+...++|-..++..++++..+|.|+.
T Consensus 82 e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Eke 161 (401)
T PF06785_consen 82 EKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKE 161 (401)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 676 KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 741 (1216)
Q Consensus 676 kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~eark 741 (1216)
-+..+|++.++++-+-.+.+-.+++.-=..-..+-+.. |+.|-.+..+..+|-..+.-..|
T Consensus 162 eesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kR-----Q~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 162 EESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKR-----QAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHH
No 489
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=92.34 E-value=11 Score=41.51 Aligned_cols=143 Identities=12% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHH
Q 000940 588 HLMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELL 667 (1216)
Q Consensus 588 ~lL~ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~L 667 (1216)
.....+..+.+...+.-.+=++ ....++...+.....+++ .+...+.....++...+......+.+.|+..+.+
T Consensus 60 ~a~~~i~~e~e~~a~~H~~~a~---~L~~~v~~~l~~~~~~~~---~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~ 133 (236)
T cd07651 60 NSLDTLRLETESMAKSHLKFAK---QIRQDLEEKLAAFASSYT---QKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEAD 133 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 000940 668 AKKYEEKY--------KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDR 739 (1216)
Q Consensus 668 r~kYEE~~--------kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~LQeRlk~iQ~kL~eLEKaL~ea 739 (1216)
..+++... +++..++.++...+.++...++++...-.+|......++.. +..+=.++.+||+.+-..
T Consensus 134 c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~-----~~~~~~~~Q~lEe~Ri~~ 208 (236)
T cd07651 134 CSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNRE-----WKAALDDFQDLEEERIQF 208 (236)
T ss_pred HHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 000940 740 CK 741 (1216)
Q Consensus 740 rk 741 (1216)
.+
T Consensus 209 lk 210 (236)
T cd07651 209 LK 210 (236)
T ss_pred HH
No 490
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=92.34 E-value=1.9 Score=41.84 Aligned_cols=93 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred hhHHHHhhhcHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000940 585 LEKHLMDQLSKEEQESLNAK------LKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS 658 (1216)
Q Consensus 585 ldd~lL~ql~~Eee~~ln~~------rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs 658 (1216)
||-.++.+.-......+... ..++-+++.+..++..+++.++.+...+.+++.++.... .+..++++++.
T Consensus 2 LDik~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~ 77 (108)
T PF02403_consen 2 LDIKLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVK 77 (108)
T ss_dssp -SHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHH
T ss_pred CCHHHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHH
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHH
Q 000940 659 GDKREVELLAKKYEEKYKQSGDV 681 (1216)
Q Consensus 659 ~lKrEiE~Lr~kYEE~~kQIsEL 681 (1216)
.++.++..++.++.+...++..+
T Consensus 78 ~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 78 ELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=92.32 E-value=2.5 Score=41.22 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 625 SREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY---KQSGDVASKLTLEEATFRDIQEKKME 701 (1216)
Q Consensus 625 lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~---kQIsELqsqIA~lEaeLqDiQ~Q~~e 701 (1216)
+..+++-....+.-|..-+...-.+...+...+..+++.++.|.++|+++. ++|.+++.++..+|.....+-+-..+
T Consensus 12 v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 12 VESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 000940 702 LYQAILKM 709 (1216)
Q Consensus 702 LqaALa~l 709 (1216)
|+..+.++
T Consensus 92 LE~k~k~l 99 (99)
T PF10046_consen 92 LESKFKKL 99 (99)
T ss_pred HHHHhhcC
No 492
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=92.30 E-value=1.1 Score=54.43 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 615 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS-GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFR 693 (1216)
Q Consensus 615 L~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs-~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLq 693 (1216)
|..|-.++..++.+++.+..+=+.|..++.|+..+.+++..+|. ++..+.++|+++.++++.++.+++..|+.|..+|.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HH
Q 000940 694 DI 695 (1216)
Q Consensus 694 Di 695 (1216)
.+
T Consensus 141 ~~ 142 (472)
T TIGR03752 141 GV 142 (472)
T ss_pred hc
No 493
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=92.30 E-value=3.5 Score=47.71 Aligned_cols=162 Identities=19% Similarity=0.166 Sum_probs=0.0
Q ss_pred hhhHHHHh-hhcHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHH
Q 000940 584 ELEKHLMD-QLSKEEQESLNAKLKEATE----ADKKVEELEKEILTSREKIQ---FCSTKMQELILYKSRCDNRLNEITE 655 (1216)
Q Consensus 584 ~ldd~lL~-ql~~Eee~~ln~~rqEAeE----~dkKL~ELeaEi~~lrqEIE---~lrtQmQEL~m~kqR~edeLnei~e 655 (1216)
+|+++-.. +..+-++-.|+.-|+.--| +..|+.+|-++|.+...+.. -++..-.++++..+.+-.+++..++
T Consensus 18 eLEkLN~sTDdIN~~E~~Le~ar~~Fretqv~~t~kl~el~Kk~~k~I~ksrpf~elk~~er~~r~e~QkAa~~FeRat~ 97 (426)
T KOG2008|consen 18 ELEKLNQSTDDINRRETELEDARQKFRETQVEATVKLDELVKKIGKAIEKSRPFWELKRVERQARLEAQKAAQDFERATE 97 (426)
T ss_pred HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCccHHHHHHHHHHHHHHHH
Q 000940 656 RVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMEL--YQAILKMEGESGDGTLQQHADHIQNELEELV 733 (1216)
Q Consensus 656 Evs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eL--qaALa~lE~r~eda~LQeRlk~iQ~kL~eLE 733 (1216)
-+...|..+..+++.+ ++.+-...+-+++++-++.-++ +++-..+....+++.--.++.++-..|.+||
T Consensus 98 vl~~AkeqVsl~~~sL---------~~~~~~~~~~~~~evlnh~~qrV~EaE~e~t~aE~~Has~a~~~l~l~~~~R~~e 168 (426)
T KOG2008|consen 98 VLRAAKEQVSLAEQSL---------LEDDKRQFDSAWQEVLNHATQRVMEAEQEKTRAELVHASTAARYLALMGRMRQLE 168 (426)
T ss_pred HHHHHHHHHHHHHHHh---------hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH----hhCcccCcccccc
Q 000940 734 KILNDRCK----QYGLRAKPTLLVE 754 (1216)
Q Consensus 734 KaL~eark----q~GL~aK~~~~vE 754 (1216)
|...-++| ||-+++|++..+|
T Consensus 169 k~n~~AIkKSrpYfE~k~~~t~~le 193 (426)
T KOG2008|consen 169 KKNKRAIKKSRPYFELKAKYTVQLE 193 (426)
T ss_pred HHhHHHHhhcchHHHHHHHHHHHHH
No 494
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=92.29 E-value=0.21 Score=58.66 Aligned_cols=125 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred hhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHH----HHH
Q 000940 592 QLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREV----ELL 667 (1216)
Q Consensus 592 ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEi----E~L 667 (1216)
+....|.+...++++|.+. +++..+.....+...++.-+...+++|..........+.++..++..++..+ +.|
T Consensus 65 et~~KE~~~~eKe~kE~~~--K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l 142 (370)
T PF02994_consen 65 ETPEKELKNKEKELKENII--KNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESL 142 (370)
T ss_dssp -------------------------------------------------------H------------------------
T ss_pred hhhhhhhhhhhhhhhHhhh--hhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH
Q 000940 668 AKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTL 718 (1216)
Q Consensus 668 r~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE~r~eda~L 718 (1216)
..+++++...|++|+..|..++..++++.+++..|.+.|.++|++....+|
T Consensus 143 ~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNi 193 (370)
T PF02994_consen 143 NSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNI 193 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCce
No 495
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.29 E-value=1.6 Score=40.67 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 000940 615 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDV 681 (1216)
Q Consensus 615 L~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsEL 681 (1216)
+..|+.+|+..-+.|..|+.++.+|...+..+.++-..+..+..+++.+.+.++.++..+...+.++
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~v 72 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEEV 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
No 496
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=92.27 E-value=3.7 Score=44.42 Aligned_cols=102 Identities=19% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHH----HHHHHH
Q 000940 606 KEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY----KQSGDV 681 (1216)
Q Consensus 606 qEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~----kQIsEL 681 (1216)
++....+.++..|++++.+++++++.++.+++++...+...+. -..+.+++..++.+++.|+.+++... ..|.++
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~e-R~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~ 140 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEE-REELLEELEELKKELKELKKELEKYSENDPEKIEKL 140 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 682 ASKLTLEEATFRDIQEKKMELYQAILK 708 (1216)
Q Consensus 682 qsqIA~lEaeLqDiQ~Q~~eLqaALa~ 708 (1216)
.+.+..+..++..--.-+-.|+.=+.+
T Consensus 141 ~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 141 KEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
No 497
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=92.27 E-value=1.8 Score=39.43 Aligned_cols=100 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000940 628 KIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1216)
Q Consensus 628 EIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa 707 (1216)
++..|...+.++.......+..| ........-.+++.+..++ ..++.+|...+.++..|.+.-.
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l--~~~~~~~~~~~~~~~~~~~--------------~~~~~ei~~~~~~l~~l~~~~~ 65 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKL--SSSEPGSDLEELEEQLKKH--------------KELQEEIESRQERLESLNEQAQ 65 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--CSCTHSSSHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hCCCCCCCHHHHHHHHHHH--------------hhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHh--cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000940 708 KME--GESGDGTLQQHADHIQNELEELVKILNDRCKQY 743 (1216)
Q Consensus 708 ~lE--~r~eda~LQeRlk~iQ~kL~eLEKaL~earkq~ 743 (1216)
.+. .......++++++.|+...+.|.+.+.++++++
T Consensus 66 ~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 66 QLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp HHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
No 498
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=92.24 E-value=1.2 Score=41.23 Aligned_cols=67 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 000940 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQ 677 (1216)
Q Consensus 611 ~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~lKrEiE~Lr~kYEE~~kQ 677 (1216)
++..+..|+..++.+..+++.+...+..|.....+....|.....++.+||.|++.|++++++..+|
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 499
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.22 E-value=0.22 Score=50.30 Aligned_cols=54 Identities=20% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHhCCCCCCcccHHHHHHHH--------HcCCCC--------HHHHHHHHHHhCCCCCCccCHHHHHHH
Q 000940 445 FVQVDIDRDGKITGEQAYNLF--------LSWRLP--------REVLKQVWDLSDQDNDGMLSLKEFCTA 498 (1216)
Q Consensus 445 F~~fDkDgDG~ISgdELr~~f--------lgs~Lp--------eeeL~qIW~LaDiD~DGkLdfdEFvvA 498 (1216)
|.+.|-|++|+|+|-||..++ .+.... +..+..|++.-|.|+||.|+|.||+.+
T Consensus 73 F~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 73 FSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
No 500
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=92.19 E-value=25 Score=39.94 Aligned_cols=164 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCCchhhHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 000940 580 SKVPELEKHLMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSG 659 (1216)
Q Consensus 580 s~~P~ldd~lL~ql~~Eee~~ln~~rqEAeE~dkKL~ELeaEi~~lrqEIE~lrtQmQEL~m~kqR~edeLnei~eEvs~ 659 (1216)
..++.|.-..|.++-+.+-..|...-+--..+-.+|+.-.+.+-++.++|--|-..+-++.+.-+|++++|+-|..+..+
T Consensus 66 ~~~s~l~~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~E 145 (254)
T KOG2196|consen 66 PAPSSLTYKTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQE 145 (254)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q ss_pred cHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCccHHHHHHHHHHHH
Q 000940 660 DKREVELLAKKYEEKY---------KQSGDVASKLTLEEATFRDIQEKKMELYQAILKME-GESGDGTLQQHADHIQNEL 729 (1216)
Q Consensus 660 lKrEiE~Lr~kYEE~~---------kQIsELqsqIA~lEaeLqDiQ~Q~~eLqaALa~lE-~r~eda~LQeRlk~iQ~kL 729 (1216)
|+.-+-.|+.+.+... .+-.+.-...+.+..+|..+-..+.++=..|-.+. ...--..+.+=.+-+|..+
T Consensus 146 LE~~L~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah~ 225 (254)
T KOG2196|consen 146 LEDLLDPLETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAHM 225 (254)
T ss_pred HHHHHHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCCchHHHHHHHHHHH
Q ss_pred HHH----------HHHHHHHHHhh
Q 000940 730 EEL----------VKILNDRCKQY 743 (1216)
Q Consensus 730 ~eL----------EKaL~earkq~ 743 (1216)
+.| +|.|.+.-|.+
T Consensus 226 ~sLqwl~d~st~~e~k~d~i~K~~ 249 (254)
T KOG2196|consen 226 DSLQWLDDNSTQLEKKLDKIKKLK 249 (254)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh
Done!