BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000941
(1215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/1231 (42%), Positives = 776/1231 (63%), Gaps = 33/1231 (2%)
Query: 2 ANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGD 61
A+ ++ +LEK+T DKDFR+MAT+DL+ EL K+S K D D E K+ ++++ L+D G+
Sbjct: 4 ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 63
Query: 62 VSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEV----TT 117
V LAVKCL PLV KV E +V + D LC +L+ K+Q RDI+SI LKT+I E+ +
Sbjct: 64 VQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123
Query: 118 SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLP 177
S+LA ++ +T +LT I K + ++ E LDI+ D+L + G L+ N H +L+ LLP
Sbjct: 124 SALAANVCKKITGRLTSAIA-KQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLP 182
Query: 178 QLSANQASVRKKSVSCIXXXXXXXXXXXXXXXTIEVVRNLRSKGAKPEMI---RTNIQMV 234
QL++ + +VRK+++ + ++++ +L S+ +K + + RT IQ +
Sbjct: 183 QLTSPRLAVRKRTIIALGHLVMSCGNIVF----VDLIEHLLSELSKNDSMSTTRTYIQCI 238
Query: 235 GALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD 294
A+SR G+R G +L +P+++ +C +D+ELREY +QA ESF+ RCP+++ +
Sbjct: 239 AAISRQAGHRIGEYLEKIIPLVVKFCNV---DDDELREYCIQAFESFVRRCPKEVYPHVS 295
Query: 295 EILHLTLEYLSYDPNFT---DNMXXXXXXXXXXXXXXXXXXXXXTDDEDASWKVRRAAAK 351
I+++ L+YL+YDPN+ ++ +DD+D SWKVRRAAAK
Sbjct: 296 TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAK 355
Query: 352 CLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDN 411
CL A++ +R EML + Y+ P LI RFKEREENVK DVF+ ++ L++QT V D
Sbjct: 356 CLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDP 415
Query: 412 NEL----NPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGS 467
+ + P +L+ +V IVK++++Q++EKS+KT+ F++L ELV VLP L HI
Sbjct: 416 DAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 475
Query: 468 LIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKV 527
L+PGI SLNDKSS+SNLKI+AL+ ++L +HSP VFHP+++AL PV+A VG+ +YK+
Sbjct: 476 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKI 535
Query: 528 TAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGL 587
T+EAL V +LV+V+RP + FD PY++ ++ + RL D DQEVKE AISCMG
Sbjct: 536 TSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 595
Query: 588 VISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAEL 647
+I GDNLG++LP L + ++R+ NEITRLT VKA +IA SPL IDL VL + L
Sbjct: 596 IICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPIL 655
Query: 648 TAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALEL 707
+FLRK RAL+ TL ++ L+ Y D + A+ + ++ EL LIS+SD+H++ +A+
Sbjct: 656 ASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISF 715
Query: 708 CCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANXXXXX 767
TL + P+ + +L + + L++S LLQG AL A+ FF ALV +
Sbjct: 716 LTTL---AKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGY 772
Query: 768 XXXXXXXXAKPSPQSGGVA-KQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSST 826
QS + KQ+ YSIA+CVA L A + + + + D+ K+ ST
Sbjct: 773 MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV-KNSRST 831
Query: 827 NS--HLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKF 884
+S LALL LGE+G DLS +++VI+E+F SP EE+KSAASYALG+I+VGNL ++
Sbjct: 832 DSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEY 891
Query: 885 LPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVR 944
LPF+L +I +Q K+QYLLLHSLKE+I SV + VE I LL HCE EEG R
Sbjct: 892 LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLK---PYVENIWALLLKHCECAEEGTR 948
Query: 945 NVVAECLGKIALIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFPEI 1004
NVVAECLGK+ LI+P L+P LK A+K++I + P+ ID ++ I
Sbjct: 949 NVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCI 1008
Query: 1005 SSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDL 1064
FL ++D D +VRR A++ ++ AHNKP+LI+ Y++T V+KELIR V++
Sbjct: 1009 GDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEM 1068
Query: 1065 GPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLIL 1124
GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+++ F+ +++ GL+DHYD+KM L+L
Sbjct: 1069 GPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLML 1127
Query: 1125 SKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQIS 1184
+L+ CPSAVL LD LV+PL+ T K K ++VKQE ++ +++ RSA+RA+A+L I
Sbjct: 1128 VRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIP 1187
Query: 1185 GGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 1215
+ S S+IS +P L F +I+ +
Sbjct: 1188 EAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/1231 (42%), Positives = 775/1231 (62%), Gaps = 33/1231 (2%)
Query: 2 ANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGD 61
A+ ++ +LEK+T DKDFR+MAT+DL+ EL K+S K D D E K+ ++++ L+D G+
Sbjct: 27 ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 86
Query: 62 VSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEV----TT 117
V LAVKCL PLV KV E +V + D LC +L+ K+Q RDI+SI LKT+I E+ +
Sbjct: 87 VQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 146
Query: 118 SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLP 177
S+LA ++ +T +LT I K + ++ E LDI+ D+L + G L+ N H +L+ LLP
Sbjct: 147 SALAANVCKKITGRLTSAIA-KQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLP 205
Query: 178 QLSANQASVRKKSVSCIXXXXXXXXXXXXXXXTIEVVRNLRSKGAKPEMI---RTNIQMV 234
QL++ + +VRK+++ + ++++ +L S+ +K + + RT IQ +
Sbjct: 206 QLTSPRLAVRKRTIIALGHLVMSCGNIVF----VDLIEHLLSELSKNDSMSTTRTYIQCI 261
Query: 235 GALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD 294
A+SR G+R G +L +P+++ +C +D+ELREY +QA ESF+ RCP+++ +
Sbjct: 262 AAISRQAGHRIGEYLEKIIPLVVKFCNV---DDDELREYCIQAFESFVRRCPKEVYPHVS 318
Query: 295 EILHLTLEYLSYDPNFT---DNMXXXXXXXXXXXXXXXXXXXXXTDDEDASWKVRRAAAK 351
I+++ L+YL+YDPN+ ++ +DD+D SWKVRRAAAK
Sbjct: 319 TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAK 378
Query: 352 CLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDN 411
CL A++ +R EML + Y+ P LI RFKEREENVK DVF+ ++ L++QT V D
Sbjct: 379 CLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDP 438
Query: 412 NEL----NPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGS 467
+ + P +L+ +V IVK++++Q++EKS+KT+ F++L ELV VLP L HI
Sbjct: 439 DAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 498
Query: 468 LIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKV 527
L+PGI SLNDKSS+SNLKI+AL+ ++L +HSP VFHP+++AL PV+A VG+ +YK+
Sbjct: 499 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKI 558
Query: 528 TAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGL 587
T+EAL V +LV+V+RP + FD PY++ ++ + RL D DQEVKE AISCMG
Sbjct: 559 TSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 618
Query: 588 VISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAEL 647
+I GDNLG++LP L + ++R+ NEITRLT VKA +IA SPL IDL VL + L
Sbjct: 619 IICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPIL 678
Query: 648 TAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALEL 707
+FLRK RAL+ TL ++ L+ Y D + A+ + ++ EL LIS+SD+H++ +A+
Sbjct: 679 ASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISF 738
Query: 708 CCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANXXXXX 767
TL + P+ + +L + + L++S LLQG AL A+ FF ALV +
Sbjct: 739 LTTL---AKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGY 795
Query: 768 XXXXXXXXAKPSPQSGGVA-KQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSST 826
QS + KQ+ YSIA+CVA L A + + + + D+ K+ ST
Sbjct: 796 MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV-KNSRST 854
Query: 827 NS--HLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKF 884
+S LALL LGE+G DLS +++VI+E+F SP EE+KSAASYALG+I+VGNL ++
Sbjct: 855 DSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEY 914
Query: 885 LPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVR 944
LPF+L +I +Q K+QYLLLHSLKE+I SV + VE I LL HCE EEG R
Sbjct: 915 LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLK---PYVENIWALLLKHCECAEEGTR 971
Query: 945 NVVAECLGKIALIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFPEI 1004
NVV ECLGK+ LI+P L+P LK A+K++I + P+ ID ++ I
Sbjct: 972 NVVVECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCI 1031
Query: 1005 SSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDL 1064
FL ++D D +VRR A++ ++ AHNKP+LI+ Y++T V+KELIR V++
Sbjct: 1032 GDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEM 1091
Query: 1065 GPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLIL 1124
GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+++ F+ +++ GL+DHYD+KM L+L
Sbjct: 1092 GPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLML 1150
Query: 1125 SKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQIS 1184
+L+ CPSAVL LD LV+PL+ T K K ++VKQE ++ +++ RSA+RA+A+L I
Sbjct: 1151 VRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIP 1210
Query: 1185 GGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 1215
+ S S+IS +P L F +I+ +
Sbjct: 1211 EAEKSPLMSEFQSQISSNPELAAIFESIQKD 1241
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 777 KPSPQSGGVAKQAMYSIAQ-------------CVAVLCLAAGDQKCSSTV------KMLT 817
KP P V QA+ ++A+ C A+ L+ G Q+ V K L
Sbjct: 161 KPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 219
Query: 818 DILKDDSSTNSHLALLCLGEIGRRKDLSSHEHIENVIIESFQ----SPFEEIKSAASYAL 873
++L +S+ AL +G I DL + I ++ + + SP E IK A + +
Sbjct: 220 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 279
Query: 874 GNIAVGNLSKFLPFI 888
NI GN + I
Sbjct: 280 SNITAGNTEQIQAVI 294
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 777 KPSPQSGGVAKQAMYSIAQ-------------CVAVLCLAAGDQKCSSTV------KMLT 817
KP P V QA+ ++A+ C A+ L+ G Q+ V K L
Sbjct: 161 KPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 219
Query: 818 DILKDDSSTNSHLALLCLGEIGRRKDLSSHEHIENVIIESFQ----SPFEEIKSAASYAL 873
++L +S+ AL +G I DL + I ++ + + SP E IK A + +
Sbjct: 220 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 279
Query: 874 GNIAVGNLSKFLPFI 888
NI GN + I
Sbjct: 280 SNITAGNTEQIQAVI 294
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 777 KPSPQSGGVAKQAMYSIAQ-------------CVAVLCLAAGDQKCSSTV------KMLT 817
KP P V QA+ ++A+ C A+ L+ G Q+ V K L
Sbjct: 159 KPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 217
Query: 818 DILKDDSSTNSHLALLCLGEIGRRKDLSSHEHIENVIIESFQ----SPFEEIKSAASYAL 873
++L +S+ AL +G I DL + I ++ + + SP E IK A + +
Sbjct: 218 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 277
Query: 874 GNIAVGNLSKFLPFI 888
NI GN + I
Sbjct: 278 SNITAGNTEQIQAVI 292
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 777 KPSPQSGGVAKQAMYSIAQ-------------CVAVLCLAAGDQKCSSTV------KMLT 817
KP P V QA+ ++A+ C A+ L+ G Q+ V K L
Sbjct: 159 KPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 217
Query: 818 DILKDDSSTNSHLALLCLGEIGRRKDLSSHEHIENVIIESFQ----SPFEEIKSAASYAL 873
++L +S+ AL +G I DL + I ++ + + SP E IK A + +
Sbjct: 218 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 277
Query: 874 GNIAVGNLSKFLPFI 888
NI GN + I
Sbjct: 278 SNITAGNTEQIQAVI 292
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 777 KPSPQSGGVAKQAMYSIAQ-------------CVAVLCLAAGDQKCSSTV------KMLT 817
KP P V QA+ ++A+ C A+ L+ G Q+ V K L
Sbjct: 160 KPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 218
Query: 818 DILKDDSSTNSHLALLCLGEIGRRKDLSSHEHIENVIIESFQ----SPFEEIKSAASYAL 873
++L +S+ AL +G I DL + I ++ + + SP E IK A + +
Sbjct: 219 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 278
Query: 874 GNIAVGNLSKFLPFI 888
NI GN + I
Sbjct: 279 SNITAGNTEQIQAVI 293
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 1072 DDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKS---GLEDHYDVKMPCHL----IL 1124
D L++++ C+ + DS + ++P + +++ GL+DH V C ++
Sbjct: 422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLV 481
Query: 1125 SKLADKCPSAVLAVLDSLVDPL 1146
+LA+ PS + +LVD L
Sbjct: 482 EQLAEATPSPIYNFYPALVDGL 503
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 505 FHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAI 564
F Y++ S +L A+ + V+ A+ ++ L DF+ Y + N +
Sbjct: 633 FEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE-------DFRRYSDAMMNVL 685
Query: 565 MSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMG 612
++N + +E+K +S G + S N+GA+ +P L D M
Sbjct: 686 AQMISNPNARRELKPAVLSVFGDIAS----NIGADF---IPYLNDIMA 726
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 1072 DDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKS---GLEDHYDVKMPCHL----IL 1124
D L++++ C+ + DS + ++P + +++ GL+DH V C ++
Sbjct: 422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLV 481
Query: 1125 SKLADKCPSAVLAVLDSLVDPL 1146
+LA+ PS + +LVD L
Sbjct: 482 EQLAEATPSPIYNFYPALVDGL 503
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 505 FHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAI 564
F Y++ S +L A+ + V+ A+ ++ L DF+ Y + N +
Sbjct: 633 FEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE-------DFRRYSDAMMNVL 685
Query: 565 MSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMG 612
++N + +E+K +S G + S N+GA+ +P L D M
Sbjct: 686 AQMISNPNARRELKPAVLSVFGDIAS----NIGADF---IPYLNDIMA 726
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 777 KPSPQSGGVAKQAMYSIAQ-------------CVAVLCLAAGDQKCSSTV------KMLT 817
KP P V QA+ ++A+ C A+ L+ G Q+ V K L
Sbjct: 160 KPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 218
Query: 818 DILKDDSSTNSHLALLCLGEIGRRKDLSSHEHIENVIIESFQ----SPFEEIKSAASYAL 873
++L +S+ AL +G I DL + I ++ + + SP E IK A + +
Sbjct: 219 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 278
Query: 874 GNIAVGNLSKFLPFI 888
NI GN + I
Sbjct: 279 SNITAGNTEQIQAVI 293
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 777 KPSPQSGGVAKQAMYSIAQ-------------CVAVLCLAAGDQKCSSTV------KMLT 817
KP P V QA+ ++A+ C A+ L+ G Q+ V K L
Sbjct: 247 KPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305
Query: 818 DILKDDSSTNSHLALLCLGEIGRRKDLSSHEHIENVIIESFQ----SPFEEIKSAASYAL 873
++L +S+ AL +G I DL + I ++ + + SP E IK A + +
Sbjct: 306 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 365
Query: 874 GNIAVGNLSKFLPFI 888
NI GN + I
Sbjct: 366 SNITAGNTEQIQAVI 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,496,839
Number of Sequences: 62578
Number of extensions: 1087826
Number of successful extensions: 2945
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2873
Number of HSP's gapped (non-prelim): 56
length of query: 1215
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1105
effective length of database: 8,089,757
effective search space: 8939181485
effective search space used: 8939181485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)